BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046997
(807 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224083488|ref|XP_002307047.1| predicted protein [Populus trichocarpa]
gi|222856496|gb|EEE94043.1| predicted protein [Populus trichocarpa]
Length = 910
Score = 1363 bits (3527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/795 (80%), Positives = 712/795 (89%), Gaps = 5/795 (0%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
I VLNVAEKPSVAKSVA ILS+NQ LR+R+GRSRYNKI+EFNYSI GQ CHML+TSVTGH
Sbjct: 2 IKVLNVAEKPSVAKSVATILSRNQ-LRVRDGRSRYNKIFEFNYSINGQQCHMLVTSVTGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LME++F++R+RKWHSCDPADLY APVRK+VPEDK DIK+TLEEEARRC WLVLWLDCDRE
Sbjct: 61 LMEVEFEDRFRKWHSCDPADLYTAPVRKYVPEDKLDIKRTLEEEARRCHWLVLWLDCDRE 120
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV+EVC+ VN +L +RRARFSALI+R+IH+A QNL+ PNQWF+DAVDARQEIDL
Sbjct: 121 GENIAFEVMEVCKGVNRNLTIRRARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEIDL 180
Query: 188 RIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
RIGASFTRFQTMLL++ F IDS DDRNLVLSYGPCQFPTLGFVVERYWEIQ+HE EEFW
Sbjct: 181 RIGASFTRFQTMLLRDRFVIDSAQDDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW 240
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVT-KVRQQEKLKYPPYPL 305
TINC+H+S+EG A+F+WMRGHLFDYTS+VI+YEMCV+EPTATV+ + QQEKLKYPPYPL
Sbjct: 241 TINCTHRSDEGLASFNWMRGHLFDYTSSVILYEMCVEEPTATVSNRNHQQEKLKYPPYPL 300
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
STIELEKRASRYFRMSSE TMKVAEDLYQAGFISYPRTETDSFSS T+LH IVQE HP
Sbjct: 301 STIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFSSRTDLHTIVQEHQEHP 360
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG YAQRLLD AGLWRNP +GGHDDKAHPPIHPTKFS+GESRWSQDH++LYELVVRHF
Sbjct: 361 VWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESRWSQDHHRLYELVVRHF 420
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVSQPAVGAET+VEI+IAGE FS SGRVILAKNYLDVYRFESWG +IPTY+ GQQFI
Sbjct: 421 LACVSQPAVGAETVVEIDIAGERFSASGRVILAKNYLDVYRFESWGDSMIPTYLQGQQFI 480
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
P TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY KDANTRF+P
Sbjct: 481 PATLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYVTKDANTRFSP 540
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
TN+GEALVMGYDDMGYELWKPNLRS+ME DMKEVSVGNKSKA+VLA CLQQMKACFLDA+
Sbjct: 541 TNLGEALVMGYDDMGYELWKPNLRSLMECDMKEVSVGNKSKAEVLATCLQQMKACFLDAK 600
Query: 606 LKKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAF 663
+ KVKLLEAM IFF R S G+D A GE VR CG+CQE+NMVLKK+RDGN MVGC F
Sbjct: 601 VNKVKLLEAMAIFFNRSDRSNGDDSSALGENVRPCGLCQEANMVLKKNRDGNFMVGCSGF 660
Query: 664 PQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDE 723
PQCRNAVWLPG V EA +T N CNSCTPGPVYLIQFKFRQ EIPPGFNVNHLGCIGGCDE
Sbjct: 661 PQCRNAVWLPGPVLEATITNNICNSCTPGPVYLIQFKFRQLEIPPGFNVNHLGCIGGCDE 720
Query: 724 TLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSR 783
TLRQLIEICGTGSR+ PT + +N Q+SN RQ CIYC Q GH+S+DCPS+ S +R
Sbjct: 721 TLRQLIEICGTGSRVQGGNGPPTTTPSNPQRSNSRQAPCIYCYQTGHASTDCPSRISATR 780
Query: 784 NARANGMNPQSGMTA 798
+ +++GMN Q+G ++
Sbjct: 781 HVQSHGMNQQNGESS 795
>gi|255572920|ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223533243|gb|EEF34998.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 833
Score = 1358 bits (3515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/796 (79%), Positives = 706/796 (88%), Gaps = 5/796 (0%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQ--GLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVT 65
INVLNVAEKPSVAKSVA ILS+NQ GLR+REG+SRYNKI+EFNY I GQ CHML+TSVT
Sbjct: 2 INVLNVAEKPSVAKSVATILSRNQQHGLRVREGQSRYNKIFEFNYVINGQNCHMLVTSVT 61
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHLMEL+FD+R+RKWHSCDPADLYHAPVRK VPEDK +IK+TLEEEARRCQWL+LWLDCD
Sbjct: 62 GHLMELEFDDRFRKWHSCDPADLYHAPVRKFVPEDKTNIKRTLEEEARRCQWLILWLDCD 121
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGENIAFEV++VCR+ N +L +RRARFSALIDREIH+A QNLV PNQWF+DAVDARQEI
Sbjct: 122 REGENIAFEVVDVCRSANRYLTVRRARFSALIDREIHEAAQNLVSPNQWFSDAVDARQEI 181
Query: 186 DLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
DLRIGASFTRFQT+LL++ F IDS DDRNLVLSYGPCQFPTLGF+VERYWEIQ+HESEE
Sbjct: 182 DLRIGASFTRFQTLLLRDKFVIDSAQDDRNLVLSYGPCQFPTLGFIVERYWEIQSHESEE 241
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FWTINCSH S EG A FSWMRGHLFDYTSAVI+YE+CV EPTATVTKV+Q+EK KYPPYP
Sbjct: 242 FWTINCSHTSVEGIANFSWMRGHLFDYTSAVILYELCVLEPTATVTKVQQKEKQKYPPYP 301
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
LSTIELEKRASRYF MSSE TMKVAEDLYQ+GFISYPRTETD FSS T+LH IV++Q H
Sbjct: 302 LSTIELEKRASRYFHMSSEQTMKVAEDLYQSGFISYPRTETDGFSSRTDLHTIVRDQQAH 361
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P WG YAQRLLD GLWRNP +GGHDDKAHPPIHPTKFS GE+ WSQDH+++YELVVRH
Sbjct: 362 PIWGSYAQRLLDPGTGLWRNPSTGGHDDKAHPPIHPTKFSPGETGWSQDHHRVYELVVRH 421
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLACVSQPAVGAET VEI+IAGE FS SGRVILAKNYLDVYRFESWGG +IPTYVHGQQF
Sbjct: 422 FLACVSQPAVGAETTVEIDIAGEQFSASGRVILAKNYLDVYRFESWGGSMIPTYVHGQQF 481
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+PTTLTLDSGVTRPPPLLSE+DLLSCMDKAGIGTDATMHDHIKKLLDRFYA KDANTRF+
Sbjct: 482 MPTTLTLDSGVTRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFS 541
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PTN+GEALVMGYDDMGYELWKPNLRSMME DMKEVS+G+KSKA+VL CLQQMK CFLDA
Sbjct: 542 PTNLGEALVMGYDDMGYELWKPNLRSMMEYDMKEVSMGHKSKAEVLETCLQQMKTCFLDA 601
Query: 605 RLKKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
R+ KVKLLEAM +FFER S G D A ++VRQCG+C+E+NMVL+++RDGN MVGC+
Sbjct: 602 RINKVKLLEAMAVFFERSDRSSGNDNHATVDIVRQCGLCRETNMVLRRNRDGNFMVGCMG 661
Query: 663 FPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCD 722
+PQCRNA+WLPG + EA VTT+ CN CTPGPVYLIQFKFRQ EIPPGF+VNHLGCIGGCD
Sbjct: 662 YPQCRNAIWLPGPIIEATVTTSVCNYCTPGPVYLIQFKFRQLEIPPGFSVNHLGCIGGCD 721
Query: 723 ETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGS 782
+TLRQL +ICGTGSR+ AR R P + +N QQSN R C++C Q GH+S DCP Q SGS
Sbjct: 722 DTLRQLTDICGTGSRVQARARAPNTTPSNSQQSNTRFATCVHCHQTGHASIDCPLQLSGS 781
Query: 783 RNARANGMNPQSGMTA 798
R ++ G N Q G ++
Sbjct: 782 RRVQSRGTNEQMGESS 797
>gi|225431699|ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
Length = 914
Score = 1348 bits (3488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/794 (79%), Positives = 706/794 (88%), Gaps = 3/794 (0%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEKPSVAK+VA ILS+NQGLR+REGRSRYNK++EFNYSIRGQ C M++TSV GH
Sbjct: 1 MKVLNVAEKPSVAKAVATILSRNQGLRVREGRSRYNKLFEFNYSIRGQHCQMVVTSVIGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LMEL+F++R+RKWHSCDPA LYHAPVRK VPEDK DIK+TLEEEAR+CQWLVLWLDCDRE
Sbjct: 61 LMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVLWLDCDRE 120
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV+EVC VN H+ + RARFSALIDREIH++VQNLV PNQ FADAVD RQEIDL
Sbjct: 121 GENIAFEVLEVCAQVNRHIDVWRARFSALIDREIHESVQNLVRPNQLFADAVDVRQEIDL 180
Query: 188 RIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
RIGASFTRFQTMLL++ F +D DDRNLVLSYGPCQFPTLGFVVERYWEIQ+HE EEFW
Sbjct: 181 RIGASFTRFQTMLLRDAFVLDFAADDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW 240
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
TINCSHKS+EGT+TF+WMR HLFDYT AVIIYEMC+QEPTATVTKVRQQEKLKYPP+PL+
Sbjct: 241 TINCSHKSDEGTSTFNWMRAHLFDYTCAVIIYEMCIQEPTATVTKVRQQEKLKYPPHPLN 300
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEKRASRYF MSSEHTMKVAEDLYQ GFISYPRTETD FS T+LHGIVQEQ+GHP
Sbjct: 301 TIELEKRASRYFHMSSEHTMKVAEDLYQTGFISYPRTETDYFSERTDLHGIVQEQLGHPI 360
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG YAQRLLD AGLWRNP +GGHDDKAHPPIHPTKFS+GES WSQDH +LYELVVRHFL
Sbjct: 361 WGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESGWSQDHQRLYELVVRHFL 420
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
ACVSQPAVGAETIVEI+IAGE FS+SGRVI+AKNYLDVYRFESWGG +IPTYV GQQFIP
Sbjct: 421 ACVSQPAVGAETIVEIDIAGESFSSSGRVIIAKNYLDVYRFESWGGSMIPTYVFGQQFIP 480
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
TTLTLDSGVTRPPPLLSEADLL+CMDKAGIGTDATMHDHIKKLLDRFYA KD+NTRF+PT
Sbjct: 481 TTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRFYATKDSNTRFSPT 540
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
N+GEALVMGYDDMGYELWKP LRSMME DMK VS+G K + +VL CL+QMKACFLDARL
Sbjct: 541 NLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARL 600
Query: 607 KKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KVKLLEAM +FFER S G++Q G+VVRQC +CQES+MVL++ DGN MVGCL +P
Sbjct: 601 NKVKLLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYP 660
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
QCRN VWLPGS+SEAA+TT +CN CTPGPVY IQFKFR+ EIPP +N++HLGC+ GCDE
Sbjct: 661 QCRNVVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEI 720
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRN 784
LRQL EICGTGSRI ARGRG ASS N Q+SN RQ ACI+C Q GHSS+DCPS+ SRN
Sbjct: 721 LRQLTEICGTGSRISARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSRVPRSRN 780
Query: 785 ARANGMNPQSGMTA 798
++++ N SG ++
Sbjct: 781 SQSHRTNMPSGESS 794
>gi|449437640|ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
Length = 925
Score = 1304 bits (3374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/787 (78%), Positives = 690/787 (87%), Gaps = 6/787 (0%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GGR I VLNVAEKPSVAKSVA ILS+NQGLR+R+GRSRYNKI+EFNY+IRGQ C+M++TS
Sbjct: 3 GGRSITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIVTS 62
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
VTGHLMEL F+ERYRKWHSCDP L+HAPV K VPEDK DIK+TLE+E+RR QWLVLWLD
Sbjct: 63 VTGHLMELAFEERYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVLWLD 122
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
CDREGENIAFEV+EVC AVN HL ++RA FSALI+R+IH AVQNLV PN+WFADAVDARQ
Sbjct: 123 CDREGENIAFEVVEVCTAVNHHLNIKRAHFSALIERDIHDAVQNLVQPNKWFADAVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLRIGASFTRFQT+LLK+ F+IDSVTDDRN+VLSYGPCQFPTLGFVVERYWEIQ+HE
Sbjct: 183 EIDLRIGASFTRFQTLLLKDAFNIDSVTDDRNIVLSYGPCQFPTLGFVVERYWEIQSHEP 242
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
EEFWTINCSH S++G +TFSW RG+LFDYT AV+ YEMCVQE TATV VR+QE LKYPP
Sbjct: 243 EEFWTINCSHNSDDGISTFSWTRGNLFDYTCAVVFYEMCVQESTATVVNVRRQETLKYPP 302
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
+PL+TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD FS T+LHGIV+EQ
Sbjct: 303 HPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSQRTDLHGIVREQQ 362
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG YAQRLLD + LWRNP GGHDDKAHPPIHPTKFS+GE WSQDH++LYELVV
Sbjct: 363 EHQIWGAYAQRLLDPESRLWRNPSGGGHDDKAHPPIHPTKFSAGERGWSQDHHRLYELVV 422
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRV-ILAKNYLDVYRFESWGGLVIPTYVHG 481
RHFLACVSQPAVGA T VEI+IAGE+FSTS R + +NYLDVYRFESWGG IPTYV G
Sbjct: 423 RHFLACVSQPAVGAVTTVEIDIAGELFSTSKRANSILRNYLDVYRFESWGGSTIPTYVSG 482
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
QQF+PTTLTLDSGVTRPPPLLSEADLLSCMDK GIGTDATMHDHIKKLLDRFYA KDANT
Sbjct: 483 QQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANT 542
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
RF PTN+GEALVMGYDDMGY LWKPNLR++ME +MK VS G K K +VLA+CLQQMK CF
Sbjct: 543 RFTPTNLGEALVMGYDDMGYNLWKPNLRAIMEHEMKAVSEGTKRKDEVLASCLQQMKTCF 602
Query: 602 LDARLKKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
LDAR+ K KLLEAM +FFER SGG++ +A GEVV+ CG+CQ+S+MVLK++RDGN MVG
Sbjct: 603 LDARVNKQKLLEAMEVFFERSNGSGGDENRAVGEVVQLCGLCQDSDMVLKRNRDGNYMVG 662
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
CL FPQCRN VWLPGS++EA VT++ C CTPGPVYLIQFKFRQ EIPP +N NHLGC+G
Sbjct: 663 CLGFPQCRNVVWLPGSIAEATVTSDRCTLCTPGPVYLIQFKFRQLEIPPNYNANHLGCVG 722
Query: 720 GCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQF 779
GCD+ LRQL EICGTGSR+ ARGRG SS+N Q+ N Q CI+CQQ+GHSS+DCPSQ
Sbjct: 723 GCDDILRQLTEICGTGSRVSARGRG--TSSSNVQRDNPGQSVCIFCQQVGHSSNDCPSQS 780
Query: 780 SGSRNAR 786
GSR+A+
Sbjct: 781 VGSRSAQ 787
>gi|15237561|ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|8777305|dbj|BAA96895.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|169218912|gb|ACA50279.1| topoisomerase 3 alpha [Arabidopsis thaliana]
gi|332010433|gb|AED97816.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 926
Score = 1282 bits (3318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/796 (76%), Positives = 683/796 (85%), Gaps = 6/796 (0%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GG P+ VLNVAEKPSVAKSVAGILS+ R REGRSRYNKI+EF+Y+I GQPC MLMTS
Sbjct: 5 GGGPVTVLNVAEKPSVAKSVAGILSRGT-FRTREGRSRYNKIFEFDYAINGQPCRMLMTS 63
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHLMEL+F +RYRKWHSCDPADLY APV KHVPEDKKDIKKTLEEEAR+ WLVLWLD
Sbjct: 64 VIGHLMELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLD 123
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
CDREGENIAFEV++VCRAV +L +RRA FSALIDR+IH+AVQNL DPNQ FA+AVDARQ
Sbjct: 124 CDREGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQ 183
Query: 184 EIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLRIGASFTRFQTMLL++ F IDS ++R+ V+SYGPCQFPTLGF+VERYWEIQAHE
Sbjct: 184 EIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEP 243
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKV-RQQEKLKYP 301
EEFWTINCSH+SEEG ATF+WMRGHLFDY SAVI+YEMCV+EPTATV V +E+ KYP
Sbjct: 244 EEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYP 303
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
PYPL+TIELEKRASRYFR+SSEHTMKVAE+LYQAGFISYPRTETDSFSS T+L +V+EQ
Sbjct: 304 PYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLRAMVEEQ 363
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP WG YAQRLL+ GLWRNP +GGHDDKAHPPIHPTKFSSGES WS+DH +YELV
Sbjct: 364 TRHPAWGSYAQRLLEPEGGLWRNPANGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELV 423
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VRH+LACVSQPAV AET VEI+IAGE FS SGR ILAKNYL+VYRFESWGG VIP Y G
Sbjct: 424 VRHYLACVSQPAVAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKG 483
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
QQFIPTTLTLD+ VTRPPPLL EADLLSCMDKAGIGTDATMHDHIKKLLDR YA KDANT
Sbjct: 484 QQFIPTTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANT 543
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
RF+PTN+GEALVMGYDDMGYELWKPNLR++ME DM EVSVG K+KA+VL CLQQMKACF
Sbjct: 544 RFSPTNLGEALVMGYDDMGYELWKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMKACF 603
Query: 602 LDARLKKVKLLEAMGIFFERWSGGE--DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
LDAR+KK KLLEAM IFFER + + + Q AGEVVR+C +C ES+M L+K+RDGN MVG
Sbjct: 604 LDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVVRRCNLCNESDMALRKNRDGNFMVG 663
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C+ +PQCRNAVWLPG EA+VTTN C SC PGPVY I FKFRQ IPPGF+VNHLGC+G
Sbjct: 664 CMNYPQCRNAVWLPGPTLEASVTTNVCQSCGPGPVYKILFKFRQIGIPPGFDVNHLGCVG 723
Query: 720 GCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ-RACIYCQQMGHSSSDCPSQ 778
GCD+ L+QLI+ICGTGSR AR TA SNN Q SN RQ CI+CQQ GH+S++CPS+
Sbjct: 724 GCDDILKQLIDICGTGSRSQARRTPGTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCPSR 783
Query: 779 FSGSRNARANGMNPQS 794
SRN+R NP++
Sbjct: 784 VPASRNSRPTATNPRN 799
>gi|297793983|ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
lyrata]
gi|297310711|gb|EFH41135.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
lyrata]
Length = 923
Score = 1272 bits (3292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/796 (76%), Positives = 681/796 (85%), Gaps = 6/796 (0%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GG P+ VLNVAEKPSVAKSVAGILS+ R REGRSRYNKI+EF+Y+I GQPC MLMTS
Sbjct: 5 GGGPVTVLNVAEKPSVAKSVAGILSRGT-FRTREGRSRYNKIFEFDYAINGQPCRMLMTS 63
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHLMEL+F RYRKWHSCDPADLY APV KHVPEDKKDIKKTLEEEAR+ WLVLWLD
Sbjct: 64 VIGHLMELEFANRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLD 123
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
CDREGENIAFEV++VCRAV +L +RRA FSALIDR+IH+AVQNL DPNQ FA+AVDARQ
Sbjct: 124 CDREGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQ 183
Query: 184 EIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLRIGASFTRFQTMLL++ F IDS ++R+ V+SYGPCQFPTLGF+VERYWEIQAHE
Sbjct: 184 EIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEP 243
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKV-RQQEKLKYP 301
EEFWTINCSH+SEEG ATF+WMRGHLFDY SAVI+YEMCV+EPTATV V +E+ KYP
Sbjct: 244 EEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYP 303
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
PYPL+TIELEKRASRYFR+SSEHTMKVAE+LYQAGFISYPRTETDSFSS T+L +V+EQ
Sbjct: 304 PYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLCAMVEEQ 363
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP WG YAQRLL+ GLWRNPG+GGHDDKAHPPIHPTKFSSGES WS+DH +YELV
Sbjct: 364 RRHPAWGSYAQRLLEPEGGLWRNPGNGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELV 423
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VRH+LACVSQPA AET VEI+IAGE FS SGR ILAKNYL+VYRFESWGG VIP Y G
Sbjct: 424 VRHYLACVSQPAKAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKG 483
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
QQFIPTTLTLDS VTRPPPLL EADLLSCMDKAGIGTDATMHDHIKKLLDR YA KDANT
Sbjct: 484 QQFIPTTLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANT 543
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
RF+PTN+GEALVMGYDDMGYELWKPNLR++ME DM EVSVG K+KA+VL CLQQMKACF
Sbjct: 544 RFSPTNLGEALVMGYDDMGYELWKPNLRALMERDMNEVSVGRKTKAEVLETCLQQMKACF 603
Query: 602 LDARLKKVKLLEAMGIFFERWSGGE--DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
LDAR+KK KLLEAM IFFER + + + Q AGEV+R+C +C ES+M L+K+RDGN MVG
Sbjct: 604 LDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVIRRCNLCNESDMALRKNRDGNFMVG 663
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C+ +PQCRNAVWLPG EA+VTT+ C +C PGPVY I FKFRQ IPPGF+VNHLGCIG
Sbjct: 664 CMNYPQCRNAVWLPGPTLEASVTTDVCQTCGPGPVYKILFKFRQIGIPPGFDVNHLGCIG 723
Query: 720 GCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ-RACIYCQQMGHSSSDCPSQ 778
GCD+ L+QLI+ICGTGSR AR T SNN Q SN RQ CI+CQQ GH+S++CPS+
Sbjct: 724 GCDDILKQLIDICGTGSRSQARRAPGTVPSNNIQGSNTRQGNFCIHCQQRGHASANCPSR 783
Query: 779 FSGSRNARANGMNPQS 794
+ RN+R NP++
Sbjct: 784 ATAFRNSRLTATNPRN 799
>gi|356516381|ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycine max]
Length = 913
Score = 1259 bits (3257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/796 (75%), Positives = 686/796 (86%), Gaps = 11/796 (1%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVLNVAEKP VA++VA ILS+NQ +R+REGRSRYNKI+EFNY+IRGQPCHM+ TSVTGH
Sbjct: 1 MNVLNVAEKPMVARTVATILSRNQNMRMREGRSRYNKIFEFNYTIRGQPCHMIFTSVTGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LMEL+FD+RYRKWHSCDPADL+ APV K VPEDKKDIK+TLEEEARRCQWL+LWLDCD E
Sbjct: 61 LMELEFDDRYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCDVE 120
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQN-LVDPNQWFADAVDARQEID 186
GENIA+EVI+VC AVN HL ++RA FS LIDR+IH A QN L DP++ ADAVD RQEID
Sbjct: 121 GENIAYEVIDVCTAVNPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVADAVDVRQEID 180
Query: 187 LRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
LRIGASFTRFQTML+K+ F ID+ TDDRN VLSYGPCQFPTLGFVVER+WEIQAHE EEF
Sbjct: 181 LRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGFVVERFWEIQAHEPEEF 240
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I CSH+S+EGTA FSWMRG LFDYT AVIIYEMCV+EPTATVT +RQQEK KYPP+PL
Sbjct: 241 WSIICSHESKEGTAEFSWMRGRLFDYTCAVIIYEMCVEEPTATVTNIRQQEKPKYPPFPL 300
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+TIEL+KRASRYFRMSS+HTMKVAE+LYQAGFISYPRTETDSFS GT+LH IVQEQ GHP
Sbjct: 301 NTIELQKRASRYFRMSSDHTMKVAEELYQAGFISYPRTETDSFSPGTDLHTIVQEQQGHP 360
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG YAQRL+D AGLWRNP GGHDDKAHPPI+PTKFS+GES WSQDH KLYELVVRHF
Sbjct: 361 EWGIYAQRLMDPEAGLWRNPRGGGHDDKAHPPIYPTKFSTGESGWSQDHRKLYELVVRHF 420
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+PA+GAET VEINIAGE+FS GRVIL KNYLDVYR+ESWGG +IPTY +GQQF
Sbjct: 421 LACVSKPALGAETTVEINIAGELFSACGRVILEKNYLDVYRYESWGGSMIPTYTNGQQFN 480
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDK--AGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
PT LTL+SGVTRPPPLLSEADLLS MD+ A IGTDATM DHIKK+LDR YA KD++TRF
Sbjct: 481 PTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKKMLDRSYATKDSSTRF 540
Query: 544 APTNIGEALVMGYD--DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PTN+GEALV+GYD DM Y+LWKP+LRS ME M +V G+KSKA+VL LQ+M+ACF
Sbjct: 541 TPTNLGEALVLGYDDIDMTYKLWKPDLRSEMEKKMDDVKKGDKSKAEVLVTILQKMEACF 600
Query: 602 LDARLKKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
L+ARL KVKLLEAM IFFER S ++ A GEVVR+CG+CQES+M+L+K+RDGN MVG
Sbjct: 601 LEARLNKVKLLEAMAIFFERSTRSSSDELHATGEVVRRCGLCQESDMLLRKNRDGNFMVG 660
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C+ +PQCRNAVWLPGSVSEA VTTNTCN CTPGPVYLIQFKFR+ EIPP ++ NHLGCIG
Sbjct: 661 CMGYPQCRNAVWLPGSVSEAVVTTNTCNFCTPGPVYLIQFKFRRLEIPPNYSPNHLGCIG 720
Query: 720 GCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQF 779
GCDE L QL EICG G R+PAR RGPTA ++N +N RQ AC+ C++ GHSS+DCP ++
Sbjct: 721 GCDEILAQLTEICGRGPRMPARPRGPTAPTSNAHHTNPRQGACMNCRETGHSSTDCPLRY 780
Query: 780 SGSRNARANGMNPQSG 795
N + +G + +G
Sbjct: 781 G---NVQHHGTSEHNG 793
>gi|297721829|ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group]
gi|255674230|dbj|BAH92006.1| Os03g0165000 [Oryza sativa Japonica Group]
Length = 928
Score = 1196 bits (3094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/799 (71%), Positives = 662/799 (82%), Gaps = 20/799 (2%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSK-NQGLRIREGRSRYNKIYEFNYSIRGQPCHML 60
GGG I VLNVAEKPSVAKSVA ILS+ + G+R REGRSRYN+++EF+YSI G+ CHML
Sbjct: 4 GGGGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHML 63
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
+TSVTGHLMEL+FD+R+R+WHSCDPADL+HAPVRK VP+DK+DIK+TLEEEAR+CQWLVL
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQWLVL 123
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
WLDCDREGENIA+EVI++C N L + RARFSALIDREIH+AVQ+L PN+ FADAVD
Sbjct: 124 WLDCDREGENIAYEVIDICAGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFADAVD 183
Query: 181 ARQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
ARQEIDLRIGASFTRFQTMLLK+ F +D DDRN++LSYGPCQFPTLGF+VER+WEIQA
Sbjct: 184 ARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQFPTLGFIVERFWEIQA 243
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
HE EEFWTINCSH S+EGTA+F W+RGHLFDY+SAV+IYEMCV+EP ATV VR QEKLK
Sbjct: 244 HEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQEKLK 303
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
YPPYPLSTIEL+KRASRYFRMSSEHTMKVAE+LYQAGFISYPRTETD+FS T+LH IV
Sbjct: 304 YPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHSIVH 363
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
EQ+ HP+WG YAQRLLD A LWRNP +GGHDDKAHPPIHPTKFS+GE+ W+ +H KLYE
Sbjct: 364 EQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWTDNHKKLYE 423
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVVRHFLAC SQPAVGAET VEI+IAGE F+ SGRV+LAKNYLDVYRF+SWGG ++PTY+
Sbjct: 424 LVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAKNYLDVYRFDSWGGTLLPTYI 483
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
GQQF+PTTLTLDSG+TRPPPLL+EADLL CMDKAGIGTDATMHDHIKKLLDR YA KDA
Sbjct: 484 IGQQFVPTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLLDRCYATKDA 543
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
NTRF+PTN+GEALVMGYD+MGYELWKP LRSMME+DMK VS+G KSK++VL NCLQQMKA
Sbjct: 544 NTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSEVLENCLQQMKA 603
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQ-QAAGEVVRQCGICQESNMVLKKSRDGNLMV 658
CFLDAR KVKL +AMG FF R S ++ Q + E VR C C ES M LK+ G MV
Sbjct: 604 CFLDARANKVKLFDAMGTFFARSSRPVNETQNSIETVRPCAACNESEMFLKQRPTGEFMV 663
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCI 718
GC FPQCRN VWLP S+S AAVT C +C PGPVY IQFKFR+ +IPP F+V+HLGCI
Sbjct: 664 GCRGFPQCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKIQFKFRRRDIPPNFDVDHLGCI 723
Query: 719 GGCDETLRQLIEICGTGSR----IPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSD 774
GGCD+ L++L+E+ GS PAR + TAS +Q + RQ H+S
Sbjct: 724 GGCDDILKELMELSRFGSHSQTATPARNQSQTASGV--RQGSSRQDL--------HTSFH 773
Query: 775 CPSQFSGSRNARANGMNPQ 793
QF+ N + +NPQ
Sbjct: 774 PAVQFT---NGQTPVVNPQ 789
>gi|242036831|ref|XP_002465810.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
gi|241919664|gb|EER92808.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
Length = 860
Score = 1179 bits (3049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/752 (74%), Positives = 639/752 (84%), Gaps = 3/752 (0%)
Query: 3 GGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMT 62
GGG I VLNVAEKPSVAK+VA ILS+ + ++ R GRS+YN+I+EFNY+I G+ CHML+T
Sbjct: 4 GGGGAIRVLNVAEKPSVAKAVAEILSR-RSMQSRAGRSQYNRIFEFNYAINGRACHMLVT 62
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SVTGHLMEL+FDER+R+WHSCDPA+L+HAPVRK VP+DK+ IK+TLEEEARRCQWLVLWL
Sbjct: 63 SVTGHLMELEFDERFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWL 122
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGENIA+EVI+VC N HL + RARFSALIDREIH++VQ+L PN+ FADAVDAR
Sbjct: 123 DCDREGENIAYEVIDVCTGANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDAR 182
Query: 183 QEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
QEIDLRIGASFTRFQTMLLK+ F I+ DDRNLVLSYGPCQFPTLGF+VER+WEIQAHE
Sbjct: 183 QEIDLRIGASFTRFQTMLLKDAFVINVTGDDRNLVLSYGPCQFPTLGFIVERFWEIQAHE 242
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
EEFWTINC+H S+EGTA+F W+RGHLFDY+ A+ IYEMCV EP ATV VR QEKLKYP
Sbjct: 243 PEEFWTINCTHTSDEGTASFGWIRGHLFDYSCAISIYEMCVSEPMATVQNVRNQEKLKYP 302
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
PYPLST+EL+KRASRYFRMSSEHTMKVAE+LYQAGFISYPRTETD+FS T+LH IV+EQ
Sbjct: 303 PYPLSTVELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHAIVREQ 362
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+ HP WG YAQRLL+ A LWRNP +GGHDDKAHPPIHPTKFS GE WS DH +LYELV
Sbjct: 363 VNHPVWGAYAQRLLNPEARLWRNPSNGGHDDKAHPPIHPTKFSEGERNWSPDHIRLYELV 422
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VRHFLAC SQPAVGAET VEI+IAGE F+ SGRVILAKNYLDVYRF+SWGG ++PTY G
Sbjct: 423 VRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVILAKNYLDVYRFDSWGGTLLPTYNIG 482
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
QQF+PTTLTLDSGVTRPPPLL+EADLLSCMDKAGIGTDATMHDHIKKLLDR YA KD NT
Sbjct: 483 QQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATKDENT 542
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
RF+PTN+GEALVMGYD+MGYELWKP LRSMME+DMK VS+G KSK++VL +CLQQMKACF
Sbjct: 543 RFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSMGTKSKSEVLESCLQQMKACF 602
Query: 602 LDARLKKVKLLEAMGIFFERWSGG-EDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
LDAR+ K KLL+AMG FF R + + Q EVVR CG C S MVLK+ G MVGC
Sbjct: 603 LDARVNKAKLLDAMGTFFARSNRPINETQNPVEVVRPCGACNGSEMVLKRRVTGEFMVGC 662
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGG 720
++PQCRN VWLPGS+SEAAVT C C PGPVY IQFKFR+ +IPP F+V+HLGC+GG
Sbjct: 663 RSYPQCRNVVWLPGSLSEAAVTNQVCPICAPGPVYKIQFKFRRRDIPPNFDVDHLGCVGG 722
Query: 721 CDETLRQLIEICGTGSRIPARGRGPTASSNNG 752
CD+ L++L+E+ GSR A G ++ G
Sbjct: 723 CDDILKELMELSRFGSRSQAATPGQVLCTSCG 754
>gi|414864981|tpg|DAA43538.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 915
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/801 (70%), Positives = 650/801 (81%), Gaps = 11/801 (1%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GG I VLNVAEKPSVAK+VA ILS+ + R GRS+YN+I+EFNY+I G+ CHML+TS
Sbjct: 5 GGGAIRVLNVAEKPSVAKAVAEILSRRSA-QSRAGRSQYNRIFEFNYAINGRACHMLVTS 63
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
VTGHLMEL+FD+R+R+WHSCDPA+L+HAPVRK VP+DK+ IK+TLEEEARRCQWLVLWLD
Sbjct: 64 VTGHLMELEFDDRFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWLD 123
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
CDREGENIA+EVI+VC N HL + RARFSALIDREIH++VQ+L PN+ FADAVDARQ
Sbjct: 124 CDREGENIAYEVIDVCTRANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDARQ 183
Query: 184 EIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLRIGASFTRFQTMLLK+ F ID D+R+LVLSYGPCQFPTLGF+VER+WEIQAHE
Sbjct: 184 EIDLRIGASFTRFQTMLLKDAFVIDVTGDERSLVLSYGPCQFPTLGFIVERFWEIQAHEP 243
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
EEFWTINC+H S+EGTA+F W+RGHLFDY+ A+ IYEMCV EP ATV VR QEKLKYPP
Sbjct: 244 EEFWTINCTHTSDEGTASFGWIRGHLFDYSCAISIYEMCVSEPMATVQNVRNQEKLKYPP 303
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
YPLST+EL+KRASRYFRMSSEHTMKVAE+LYQAGFISYPRTETD+FS T+LH IV+EQ+
Sbjct: 304 YPLSTVELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHAIVREQV 363
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP WG YAQRLL+ A LWRNP +GGHDDKAHPPIHPTKFS GE WS DH +LYE VV
Sbjct: 364 NHPVWGAYAQRLLNPEARLWRNPSNGGHDDKAHPPIHPTKFSEGERNWSPDHTRLYEFVV 423
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLAC SQPAVGAET VEI+IAGE F+ SGRVILAKNYLDVYRF+SWGG ++PTY GQ
Sbjct: 424 RHFLACCSQPAVGAETTVEIDIAGEQFNASGRVILAKNYLDVYRFDSWGGTLLPTYNIGQ 483
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
QF+PTTLTLDSGVTRPPPLL+EADLLSCMDKAGIGTDATMHDHIKKLLDR YA KD NTR
Sbjct: 484 QFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATKDENTR 543
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
F+PTN+GEALVMGYD+MGYELWKP LRSMME+DMK VSVG KSK++VL +CLQQMKACFL
Sbjct: 544 FSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSVGTKSKSEVLESCLQQMKACFL 603
Query: 603 DARLKKVKLLEAMGIFFERWSGG-EDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
DAR+KK KLL+AMG FF R + + Q EVVR CG C S M+LK+ G MVGC
Sbjct: 604 DARVKKAKLLDAMGTFFARSNRPINETQNPVEVVRPCGACNGSEMLLKRRASGEFMVGCR 663
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
++PQCRN VWLPGS+SEAAVT C C PGPVY IQFKFR+ +IPP F+V+HLGC+GGC
Sbjct: 664 SYPQCRNVVWLPGSLSEAAVTNQVCPICAPGPVYKIQFKFRRRDIPPNFDVDHLGCVGGC 723
Query: 722 DETLRQLIEICGTGSR----IPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPS 777
D+ L+ L+EI GSR PARG P N Q RQ + ++D PS
Sbjct: 724 DDILKDLMEISRFGSRSQAATPARGPTP----NGVGQGTPRQDLHTIFRPASQLNNDNPS 779
Query: 778 QFSGSRNARANGMNPQSGMTA 798
+ NP + A
Sbjct: 780 VMHSQGFRSTHTQNPSNASDA 800
>gi|357113918|ref|XP_003558748.1| PREDICTED: DNA topoisomerase 3-alpha [Brachypodium distachyon]
Length = 924
Score = 1172 bits (3031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/753 (73%), Positives = 640/753 (84%), Gaps = 7/753 (0%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLM 61
GGG I VLNVAEKPSVAKSVA ILS+ + ++ R GRSRYN+I+EFNY+I GQ CHML+
Sbjct: 5 GGGGGAIRVLNVAEKPSVAKSVAEILSR-RAMQSRPGRSRYNRIFEFNYAIGGQACHMLV 63
Query: 62 TSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLW 121
TSVTGHLMELDFD+RYR+W+SCDP +L+HAPVRK VP+DK DIK+TLEEEAR CQWLVLW
Sbjct: 64 TSVTGHLMELDFDDRYRRWYSCDPVELFHAPVRKAVPQDKLDIKRTLEEEARTCQWLVLW 123
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
LDCDREGENIA+EV+E+C VN L + RARFSALIDREIH+AVQ+L PN+ FADAVDA
Sbjct: 124 LDCDREGENIAYEVVEICAGVNHCLNIWRARFSALIDREIHEAVQHLGRPNKLFADAVDA 183
Query: 182 RQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
RQEIDLRIGASFTRFQTMLLK+ F +D ++RN+VLSYGPCQFPTLGF+VER+WEIQAH
Sbjct: 184 RQEIDLRIGASFTRFQTMLLKDAFVLDVSGEERNMVLSYGPCQFPTLGFIVERFWEIQAH 243
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
E EEFWTINCSH S+EGTA+F W+RGHLFDY+SA++IYEMCVQEP ATV VR QEKLKY
Sbjct: 244 EPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAIVIYEMCVQEPMATVQNVRNQEKLKY 303
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PPYPLST+EL+KRASR RMSSEHTMKVAE+LYQAGFISYPRTETD+FS T+LH I E
Sbjct: 304 PPYPLSTLELQKRASRCCRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHAIAHE 363
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q+ HP WG YAQRLL+ LWRNP +GGHDDKAHPPIHPTKF++GES WSQDH+K+YEL
Sbjct: 364 QVPHPVWGSYAQRLLNPEERLWRNPSNGGHDDKAHPPIHPTKFTAGESNWSQDHHKVYEL 423
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
VVRHFLAC SQPAVGAET VEI+IAGE F+ SGRV+LAKNYLDVYR++SWGG ++PTY
Sbjct: 424 VVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAKNYLDVYRYDSWGGSLLPTYTI 483
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
GQQF+PTTLTLDSGVTRPPPLL+EADLLSCMDKAGIGTDATMH+HIKKLLDR YA KDAN
Sbjct: 484 GQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHEHIKKLLDRCYATKDAN 543
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
+RF+PTN+GEALVMGYD+MGYELWKP LR+MME+DMK VS+G KSK +VL CLQQMKAC
Sbjct: 544 SRFSPTNLGEALVMGYDEMGYELWKPYLRAMMEADMKAVSIGTKSKLEVLEGCLQQMKAC 603
Query: 601 FLDARLKKVKLLEAMGIFFERWSGG-EDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
FLDAR KVKLL+AMG FF R + + Q EVVR CG C +S M+LK+ +G MVG
Sbjct: 604 FLDARSNKVKLLDAMGTFFARSNRPLNETQNPMEVVRPCGACNDSEMLLKRKPNGGFMVG 663
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C +FPQCRN VWLPGS+SEAAVT C +C PGPVY IQFKF + +IPP F+V+HLGCIG
Sbjct: 664 CRSFPQCRNVVWLPGSLSEAAVTEQICPTCVPGPVYKIQFKFNRRDIPPNFDVDHLGCIG 723
Query: 720 GCDETLRQLIEIC----GTGSRIPARGRGPTAS 748
GCD+ L++LIEI + PARG+ T S
Sbjct: 724 GCDDVLKELIEITRFVNHNQTTTPARGQSQTPS 756
>gi|218201738|gb|EEC84165.1| hypothetical protein OsI_30540 [Oryza sativa Indica Group]
Length = 897
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/796 (67%), Positives = 629/796 (79%), Gaps = 45/796 (5%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSK-NQGLRIREGRSRYNKIYEFNYSIRGQPCHML 60
GGG I VLNVAEKPSVAKSVA ILS+ + G+R REGRSRYN+++EF+YSI G+ CHML
Sbjct: 4 GGGGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHML 63
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
+TSVTGHLMEL+FD+R+R+WHSCDPADL+HAPVRK VP+DK+DIK+TLEEEAR+CQWLVL
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQWLVL 123
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
WLDCDREGENIA+EVI++C N L + RA FSALIDREIH+AVQ+L PN+ FADAVD
Sbjct: 124 WLDCDREGENIAYEVIDICAGANSRLNIWRACFSALIDREIHEAVQHLDRPNKLFADAVD 183
Query: 181 ARQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
ARQEIDLRIGASFTRFQT+LLK+ F +D DDRN++LSYGPCQFPTLGF+VER+WEIQA
Sbjct: 184 ARQEIDLRIGASFTRFQTVLLKDAFVLDDTGDDRNIILSYGPCQFPTLGFIVERFWEIQA 243
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
HE EEFWTINCSH S+EGTA+F W+RGHLFDY+SAV+IYEMCV+EP ATV VR QEKLK
Sbjct: 244 HEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVKEPMATVQNVRNQEKLK 303
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
YPPYPLSTIEL+KRASRYFRMSSEHTMKVAE+LYQAGFISYPRTETD+FS +LH IV
Sbjct: 304 YPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNIDLHSIVH 363
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
EQ+ HP+ G YAQRLLD A LWRNP +GGHDDKAHPPIHPTKFS+GE+ W+ +H KLYE
Sbjct: 364 EQVAHPNRGIYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWTDNHKKLYE 423
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVVRHFLAC SQPAVGAET VEINIAGE F+ SGRV+LAKNYLDVYRF+SWGG ++PTY+
Sbjct: 424 LVVRHFLACCSQPAVGAETTVEINIAGEQFNASGRVVLAKNYLDVYRFDSWGGTLLPTYI 483
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
GQQ AGIGTDATMHDHIKKLLDR YA K+A
Sbjct: 484 IGQQ------------------------------AGIGTDATMHDHIKKLLDRCYATKNA 513
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
NTRF+PTN+GEALVMGY++MGYELWKP LRS+ME+DMK VS+ KSK++VL NCLQQMKA
Sbjct: 514 NTRFSPTNLGEALVMGYNEMGYELWKPYLRSVMEADMKSVSICTKSKSEVLENCLQQMKA 573
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
CFLDAR KVKL +AMG FF R S ++ E VR C C ES M LK+ G MVG
Sbjct: 574 CFLDARANKVKLFDAMGTFFARSSRPVNETQNVETVRPCAACNESEMFLKQRPTGEFMVG 633
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C FPQCRNAVWLP S+SEAAVT C +C PGPVY IQFKFR+ +IPP F+V+HLGCIG
Sbjct: 634 CRGFPQCRNAVWLPRSLSEAAVTDQVCPTCAPGPVYKIQFKFRRRDIPPNFDVDHLGCIG 693
Query: 720 GCDETLRQLIEIC--GTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPS 777
GCD+ L++L+EI G+ S+ R P +++ +Q + RQ H+S
Sbjct: 694 GCDDILKELMEISRFGSHSQTATPARNPNQTASGVRQGSSRQDL--------HTSFHPAG 745
Query: 778 QFSGSRNARANGMNPQ 793
QF+ N + +NPQ
Sbjct: 746 QFT---NGQTPVVNPQ 758
>gi|168067139|ref|XP_001785482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662889|gb|EDQ49689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 915
Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/799 (64%), Positives = 606/799 (75%), Gaps = 24/799 (3%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
RPI VLNVAEKPSVAKSVA ILS+ +R R GRS YNKI+EF Y+I GQ C MLMTSV
Sbjct: 2 ARPIRVLNVAEKPSVAKSVAVILSRGN-VRTRNGRSVYNKIFEFGYTIGGQQCDMLMTSV 60
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
TGHLMELDF++++RKWHSCDP DL+ APVRK VP+DK +++KTLEEEAR CQWLVLWLDC
Sbjct: 61 TGHLMELDFEDQFRKWHSCDPVDLFQAPVRKKVPQDKVNLQKTLEEEARHCQWLVLWLDC 120
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENIA+EV++VCRA N + + RA FSALIDREIH AVQ+L PN+ +ADAVDARQE
Sbjct: 121 DREGENIAYEVVDVCRASNARINIWRAHFSALIDREIHHAVQHLGRPNKMYADAVDARQE 180
Query: 185 IDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
IDLRIGASFTRFQTMLL + F + DD+ LVLSYGPCQFPTLGFVVERYW+IQAH +E
Sbjct: 181 IDLRIGASFTRFQTMLLSDSFVMPFGEDDKKLVLSYGPCQFPTLGFVVERYWQIQAHVAE 240
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+FW I C HK+E+G+A FSW RG LFD +A IIYEMC++ PTATV +V QEK K+PP
Sbjct: 241 DFWAIKCFHKAEDGSAEFSWARGRLFDELAAFIIYEMCMERPTATVCQVTGQEKRKFPPV 300
Query: 304 PLSTIELEKRASRYFRMS--------SEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLH 355
PL+T+EL+KRASRYFRM ++VAE+LYQAGFISYPRTETD FS +L
Sbjct: 301 PLNTVELQKRASRYFRMGYILNYEAVRSQFLQVAEELYQAGFISYPRTETDKFSENQDLQ 360
Query: 356 GIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY 415
IV EQIGH WG YAQRLLD LW+ PG GGHDDKAHPPIHPT+FS GE W+ DH
Sbjct: 361 SIVNEQIGHSAWGQYAQRLLDPQQQLWKQPGDGGHDDKAHPPIHPTRFSEGEGNWTNDHA 420
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
++YELVVRHFLACVSQPA+G T I+IAGE F+ +G +I AKNYLDVYRF++WG I
Sbjct: 421 RIYELVVRHFLACVSQPAIGYGTTATIDIAGERFTATGLMITAKNYLDVYRFDNWGTSTI 480
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P + GQQFIPT LTL+ G T+PPPLLSEADL+S MDKAGIGTDATMHDHIKKLLDR YA
Sbjct: 481 PKFEVGQQFIPTRLTLEVGRTQPPPLLSEADLISLMDKAGIGTDATMHDHIKKLLDRCYA 540
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
KDANTRF PT +GEALVMGYD MG+ELWKP+LR++MESDMK VS G K+K VL L+
Sbjct: 541 TKDANTRFCPTTLGEALVMGYDSMGHELWKPDLRALMESDMKAVSDGRKTKPQVLEAALE 600
Query: 596 QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
MK+ F+ AR +K KLL+AMGIFFER +GG++Q+ AGE VR C +CQ++ M+L+K DG
Sbjct: 601 GMKSLFISARTQKEKLLDAMGIFFERSAGGDEQRQAGERVRLCPLCQQNTMILRKKPDGK 660
Query: 656 LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHL 715
MVGC +P CRN VWLPG EA+VT C SC PG V I KFR+ EIPP F+V H
Sbjct: 661 FMVGCSGYPNCRNVVWLPGPAIEASVTNQPCISCGPGQVLKIYLKFRRGEIPPNFDVEHT 720
Query: 716 GCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNH--------RQRACIYCQQ 767
GC+ GCD +++LIEICGT A G G + ++NG +N QR C C Q
Sbjct: 721 GCV-GCDRVIKELIEICGT-----AGGSGYMSGNSNGFGNNSSFVTGREASQRNCTNCGQ 774
Query: 768 MGHSSSDCPSQFSGSRNAR 786
GH + DCP G + R
Sbjct: 775 SGHYNMDCPRNQQGRVSNR 793
>gi|449521062|ref|XP_004167550.1| PREDICTED: DNA topoisomerase 3-like, partial [Cucumis sativus]
Length = 607
Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/605 (81%), Positives = 544/605 (89%), Gaps = 1/605 (0%)
Query: 3 GGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMT 62
GGR I VLNVAEKPSVAKSVA ILS+NQGLR+R+GRSRYNKI+EFNY+IRGQ C+M++T
Sbjct: 2 SGGRSITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIVT 61
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SVTGHLMEL F+ERYRKWHSCDP L+HAPV K VPEDK DIK+TLE+E+RR QWLVLWL
Sbjct: 62 SVTGHLMELAFEERYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVLWL 121
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGENIAFEV+EVC AVN HL ++RA FSALI+R+IH AVQNLV PN+WFADAVDAR
Sbjct: 122 DCDREGENIAFEVVEVCTAVNHHLNIKRAHFSALIERDIHDAVQNLVQPNKWFADAVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
QEIDLRIGASFTRFQT+LLK+ F+IDSVTDDRN+VLSYGPCQFPTLGFVVERYWEIQ+HE
Sbjct: 182 QEIDLRIGASFTRFQTLLLKDAFNIDSVTDDRNIVLSYGPCQFPTLGFVVERYWEIQSHE 241
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
EEFWTINCSH S++G +TFSW RG+LFDYT AV+ YEMCVQE TATV VR+QE LKYP
Sbjct: 242 PEEFWTINCSHNSDDGISTFSWTRGNLFDYTCAVVFYEMCVQESTATVVNVRRQETLKYP 301
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P+PL+TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD FS T+LHGIV+EQ
Sbjct: 302 PHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSQRTDLHGIVREQ 361
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
H WG YAQRLLD + LWRNP GGHDDKAHPPIHPTKFS+GE WSQDH++LYELV
Sbjct: 362 QEHQIWGAYAQRLLDPESRLWRNPSGGGHDDKAHPPIHPTKFSAGERGWSQDHHRLYELV 421
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VRHFLACVSQPAVGA T VEI+IAGE+FSTSGR+ILA+NYLDVYRFESWGG IPTYV G
Sbjct: 422 VRHFLACVSQPAVGAVTTVEIDIAGELFSTSGRMILARNYLDVYRFESWGGSTIPTYVSG 481
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
QQF+PTTLTLDSGVTRPPPLLSEADLLSCMDK GIGTDATMHDHIKKLLDRFYA KDANT
Sbjct: 482 QQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANT 541
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
RF PTN+G+ALVMGYDDMGY LWKPNLR++ME +MK VS G K K +VLA+CLQQMK CF
Sbjct: 542 RFTPTNLGKALVMGYDDMGYNLWKPNLRAIMEHEMKAVSEGTKRKDEVLASCLQQMKTCF 601
Query: 602 LDARL 606
LD R+
Sbjct: 602 LDVRI 606
>gi|302774743|ref|XP_002970788.1| hypothetical protein SELMODRAFT_94303 [Selaginella moellendorffii]
gi|300161499|gb|EFJ28114.1| hypothetical protein SELMODRAFT_94303 [Selaginella moellendorffii]
Length = 794
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/732 (62%), Positives = 556/732 (75%), Gaps = 9/732 (1%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVLNVAEKPS AK +A ILS R G S YN+I+ FNY I GQPC M+MTSV+GH
Sbjct: 3 VNVLNVAEKPSAAKEIAQILSHGD-CRSLSGHSVYNRIFHFNYMIGGQPCRMVMTSVSGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LMELDF+E++RKW+ CDPADL+ APVR++VP+DK IK+TLEE+AR CQWLVLWLDCDRE
Sbjct: 62 LMELDFEEQFRKWYYCDPADLFQAPVRRYVPQDKLGIKRTLEEQARNCQWLVLWLDCDRE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIA+EV+EVC VN L + RARFSA I+REI A QNL PN+ +DAVDARQEIDL
Sbjct: 122 GENIAYEVVEVCLNVNRGLNVLRARFSAFIEREIQHAAQNLHRPNRNLSDAVDARQEIDL 181
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGASFTRFQTMLLK+ + + +LSYGPCQFPTLGFVVERYW++QAH+ E+FWT
Sbjct: 182 RIGASFTRFQTMLLKDRFVLPFDEHEKAILSYGPCQFPTLGFVVERYWQVQAHQPEDFWT 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
INC ++SE +A+F W RGHLFDY +AV IYEMCV+EP ATV V +E K PP+PL+T
Sbjct: 242 INCVYRSENDSASFKWTRGHLFDYVAAVSIYEMCVEEPLATVFSVTGRETRKNPPHPLNT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL KRASR+ R S+ TMK AE+LYQ GFISYPRTETD FS T+L +V+EQ HP W
Sbjct: 302 VELVKRASRFLRFGSQETMKAAEELYQQGFISYPRTETDYFSENTDLRRMVEEQTRHPVW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA RL+D LWR+P +GGHDDKAHPPIHPT+FS GE +W DH +YELVVRHFLA
Sbjct: 362 GNYAHRLVDPRENLWRHPSNGGHDDKAHPPIHPTRFSDGEPQWRNDHKAVYELVVRHFLA 421
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
CVSQPAVG T I+IAGE FS +G ++ A+NYL+VYR+E+W +P + GQQFIPT
Sbjct: 422 CVSQPAVGYATKAMIDIAGEQFSANGLMVTARNYLEVYRYENWAASTLPNFDLGQQFIPT 481
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
LTLD+G T+PPPLLSEADL++ MDK GIGTDATMHDHIKKLLDR YA KDA TRF PTN
Sbjct: 482 RLTLDAGRTQPPPLLSEADLIALMDKEGIGTDATMHDHIKKLLDRRYATKDAQTRFCPTN 541
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR-- 605
+GEALVMGYD MGYELWKP+LRS+ME DMK VS G K K +VL CLQQMK CFLD +
Sbjct: 542 LGEALVMGYDTMGYELWKPHLRSIMERDMKAVSDGIKVKENVLETCLQQMKTCFLDRQWV 601
Query: 606 --LKKVKLLEAMGIFFERWSGGEDQQA----AGEVVRQCGICQESNMVLKKSRDGNLMVG 659
L+ + + + +R + ++Q G +VR+C +C+E++MVLK+ D MVG
Sbjct: 602 FSLRGKHVFFGISFYLDRSNRSQNQVPEAVQVGGIVRRCPMCREADMVLKRRPDSKFMVG 661
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C FPQC+N VWLP V EA VT +TCNSC P PVY I FKF++ EIPP +++ H GC+G
Sbjct: 662 CRNFPQCKNVVWLPSVVMEATVTAHTCNSCIPAPVYKIDFKFKRAEIPPQYSIYHTGCVG 721
Query: 720 GCDETLRQLIEI 731
GCD L ++ I
Sbjct: 722 GCDIVLNDIMNI 733
>gi|302806755|ref|XP_002985109.1| hypothetical protein SELMODRAFT_121488 [Selaginella moellendorffii]
gi|300147319|gb|EFJ13984.1| hypothetical protein SELMODRAFT_121488 [Selaginella moellendorffii]
Length = 791
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/729 (63%), Positives = 554/729 (75%), Gaps = 6/729 (0%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVLNVAEKPS AK +A ILS R G S YN+I+ FNY I GQPC M+MTSV+GH
Sbjct: 3 VNVLNVAEKPSAAKEIAQILSHGD-CRSLSGHSVYNRIFHFNYMIGGQPCRMVMTSVSGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LMELDF+E++RKW+ CDPADL+ APVR++VP+DK IK+TLEE+AR CQWLVLWLDCDRE
Sbjct: 62 LMELDFEEQFRKWYYCDPADLFQAPVRRYVPQDKLGIKRTLEEQARNCQWLVLWLDCDRE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIA+EV+EVC VN L + RARFSA I+REI A QNL PN+ +DAVDARQEIDL
Sbjct: 122 GENIAYEVVEVCLNVNRGLNVLRARFSAFIEREIQHAAQNLHRPNRNLSDAVDARQEIDL 181
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGASFTRFQTMLLK+ + + +LSYGPCQFPTLGFVVERYW++QAH+ E+FWT
Sbjct: 182 RIGASFTRFQTMLLKDRFVLPFDEHEKAILSYGPCQFPTLGFVVERYWQVQAHQPEDFWT 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
INC ++SE +A+F W RGHLFDY +AV IYEMCV+EP ATV V +E K PP+PL+T
Sbjct: 242 INCVYRSENDSASFKWARGHLFDYVAAVAIYEMCVEEPLATVFSVTGRETRKNPPHPLNT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL KRASR+ R+ S+ TMK AE+LYQ GFISYPRTETD FS T+L +V+EQ HP W
Sbjct: 302 VELVKRASRFLRLGSQETMKAAEELYQQGFISYPRTETDYFSENTDLRRMVEEQTRHPVW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA RLLD LWR+P +GGHDDKAHPPIHPT+FS GE +W DH +YELVVRHFLA
Sbjct: 362 GNYAHRLLDSRENLWRHPSNGGHDDKAHPPIHPTRFSDGEPQWRNDHKAVYELVVRHFLA 421
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
CVSQPAVG T I+IAGE FS +G ++ A+NYL+VYR+E+W +P + GQQFIPT
Sbjct: 422 CVSQPAVGYATKAMIDIAGEQFSANGLMVTARNYLEVYRYENWAASTLPNFDLGQQFIPT 481
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
LTLD+G T+PPPLLSEADL++ MDK GIGTDATMHDHIKKLLDR YA KDA TRF PTN
Sbjct: 482 RLTLDAGRTQPPPLLSEADLIALMDKEGIGTDATMHDHIKKLLDRRYATKDAQTRFCPTN 541
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+GEALVMGYD MGYELWKP+LRS+ME DMK V G K K +VL CLQQMK CFLD K
Sbjct: 542 LGEALVMGYDTMGYELWKPHLRSIMERDMKAVGDGIKVKENVLETCLQQMKTCFLDVGFK 601
Query: 608 KVKLLEAMGIF-----FERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+LL IF E + + G +VR+C +C+E++MVLK+ D MVGC
Sbjct: 602 AFQLLLYFLIFLIFSRLESQNQVPEAVQVGGIVRRCPMCREADMVLKRRPDSKFMVGCRN 661
Query: 663 FPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCD 722
FPQC+N VWLP V EA VTT+TCNSC P PVY I FKF++ EIPP +++ H GC+GGCD
Sbjct: 662 FPQCKNVVWLPSVVMEATVTTHTCNSCIPAPVYKIDFKFKRAEIPPQYSIYHTGCVGGCD 721
Query: 723 ETLRQLIEI 731
L ++ I
Sbjct: 722 IVLNDIMNI 730
>gi|357464743|ref|XP_003602653.1| DNA topoisomerase [Medicago truncatula]
gi|355491701|gb|AES72904.1| DNA topoisomerase [Medicago truncatula]
Length = 587
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/583 (78%), Positives = 496/583 (85%), Gaps = 26/583 (4%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GGR I VLNVAEKPSVAKSVA ILS+NQGLR+R+GRSRYN+I+EFNY+IRGQPC ML TS
Sbjct: 2 GGRAITVLNVAEKPSVAKSVASILSRNQGLRVRDGRSRYNRIFEFNYTIRGQPCQMLFTS 61
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHLMELDFD+RYRKWHSCDPADL+ APV K VPEDKKDIK+TLEEEARRCQWL+LWLD
Sbjct: 62 VLGHLMELDFDDRYRKWHSCDPADLFQAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLD 121
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
CDREGENIAFEVI VC A N +L ++RARFSALIDREIHQAVQNLV+PN+WFADAVDARQ
Sbjct: 122 CDREGENIAFEVINVCTAANPNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLRIGA+FTRFQTML+K+ F ID+VTD RN VLSYGPCQFPTLGFVVERYWEIQAHE
Sbjct: 182 EIDLRIGATFTRFQTMLMKDAFVIDTVTDGRNTVLSYGPCQFPTLGFVVERYWEIQAHEP 241
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
EEFW I CSH+S+EG A FSW RGHLFDYT AVIIYEMC++EPTATVTKV +EK KYPP
Sbjct: 242 EEFWLIKCSHRSDEGVANFSWERGHLFDYTCAVIIYEMCIEEPTATVTKVTPKEKPKYPP 301
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
+PLSTIELEKRASRYFRMSSE TMKVAE+LYQ GFISYPRTETD+FSS T+LH IVQEQ
Sbjct: 302 HPLSTIELEKRASRYFRMSSERTMKVAEELYQGGFISYPRTETDNFSSRTDLHAIVQEQQ 361
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GHP+WG YAQRLLD AGLWRNP GGHDD+AHPPIHPTKFS+GES WSQDH KLYELVV
Sbjct: 362 GHPEWGIYAQRLLDPGAGLWRNPRGGGHDDQAHPPIHPTKFSAGESGWSQDHRKLYELVV 421
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLACVS+PA+GAET VEI+IAGE FS GRVIL +NYLD+Y ++ W G +IP Y G+
Sbjct: 422 RHFLACVSKPALGAETTVEIDIAGERFSACGRVILERNYLDIYIYDRWDGSMIPNYAIGE 481
Query: 483 -------------------------QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
QFIPTTLTLD G T PPPLLSEADLLS MDK IG
Sbjct: 482 QYPKSQIPDGILHQTNPGIPELLLLQFIPTTLTLDPGKTNPPPLLSEADLLSRMDKECIG 541
Query: 518 TDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
TDATMHDHIKKLLDRFYA KDAN F PTN+GEALVMGYDDMG
Sbjct: 542 TDATMHDHIKKLLDRFYATKDANMCFTPTNLGEALVMGYDDMG 584
>gi|20219039|gb|AAM15783.1|AC104428_4 Putative DNA topoisomerase III [Oryza sativa Japonica Group]
gi|108706350|gb|ABF94145.1| DNA topoisomerase family protein, expressed [Oryza sativa Japonica
Group]
Length = 912
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/700 (66%), Positives = 537/700 (76%), Gaps = 62/700 (8%)
Query: 100 DKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDR 159
DK+DIK+TLEEEAR+CQWLVLWLDCDREGENIA+EVI++C N L + RARFSALIDR
Sbjct: 201 DKQDIKRTLEEEARKCQWLVLWLDCDREGENIAYEVIDICAGANSRLNIWRARFSALIDR 260
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLS 218
EIH+AVQ+L PN+ FADAVDARQEIDLRIGASFTRFQTMLLK+ F +D DDRN++LS
Sbjct: 261 EIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILS 320
Query: 219 YGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIY 278
YGPCQFPTLGF+VER+WEIQAHE EEFWTINCSH S+EGTA+F W+RGHLFDY+SAV+IY
Sbjct: 321 YGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIY 380
Query: 279 EMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFI 338
EMCV+EP ATV VR QEKLKYPPYPLSTIEL+KRASRYFRMSSEHTMKVAE+LYQAGFI
Sbjct: 381 EMCVEEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFI 440
Query: 339 SYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
SYPRTETD+FS T+LH IV EQ+ HP+WG YAQRLLD A LWRNP +GGHDDKAHPPI
Sbjct: 441 SYPRTETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPI 500
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
HPTKFS+GE+ W+ +H KLYELVVRHFLAC SQPAVGAET VEI+IAGE F+ SGRV+LA
Sbjct: 501 HPTKFSAGETNWTDNHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLA 560
Query: 459 KNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
KNYLDVYRF+SWGG ++PTY+ GQQ AGIGT
Sbjct: 561 KNYLDVYRFDSWGGTLLPTYIIGQQ------------------------------AGIGT 590
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
DATMHDHIKKLLDR YA KDANTRF+PTN+GEALVMGYD+MGYELWKP LRSMME+DMK
Sbjct: 591 DATMHDHIKKLLDRCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKS 650
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQ-QAAGEVVRQ 637
VS+G KSK++VL NCLQQMKACFLDAR KVKL +AMG FF R S ++ Q + E VR
Sbjct: 651 VSIGTKSKSEVLENCLQQMKACFLDARANKVKLFDAMGTFFARSSRPVNETQNSIETVRP 710
Query: 638 CGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLI 697
C C ES M LK+ CRN VWLP S+S AAVT C +C PGPVY I
Sbjct: 711 CAACNESEMFLKQR-------------PCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKI 757
Query: 698 QFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSR----IPARGRGPTASSNNGQ 753
QFKFR+ +IPP F+V+HLGCIGGCD+ L++L+E+ GS PAR + TAS +
Sbjct: 758 QFKFRRRDIPPNFDVDHLGCIGGCDDILKELMELSRFGSHSQTATPARNQSQTASGV--R 815
Query: 754 QSNHRQRACIYCQQMGHSSSDCPSQFSGSRNARANGMNPQ 793
Q + RQ H+S QF+ N + +NPQ
Sbjct: 816 QGSSRQDL--------HTSFHPAVQFT---NGQTPVVNPQ 844
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/99 (73%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSK-NQGLRIREGRSRYNKIYEFNYSIRGQPCHML 60
GGG I VLNVAEKPSVAKSVA ILS+ + G+R REGRSRYN+++EF+YSI G+ CHML
Sbjct: 4 GGGGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHML 63
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPE 99
+TSVTGHLMEL+FD+R+R+WHSCDPADL+HAPVRK VP+
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQ 102
>gi|222624247|gb|EEE58379.1| hypothetical protein OsJ_09535 [Oryza sativa Japonica Group]
Length = 983
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/700 (66%), Positives = 537/700 (76%), Gaps = 62/700 (8%)
Query: 100 DKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDR 159
DK+DIK+TLEEEAR+CQWLVLWLDCDREGENIA+EVI++C N L + RARFSALIDR
Sbjct: 201 DKQDIKRTLEEEARKCQWLVLWLDCDREGENIAYEVIDICAGANSRLNIWRARFSALIDR 260
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLS 218
EIH+AVQ+L PN+ FADAVDARQEIDLRIGASFTRFQTMLLK+ F +D DDRN++LS
Sbjct: 261 EIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILS 320
Query: 219 YGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIY 278
YGPCQFPTLGF+VER+WEIQAHE EEFWTINCSH S+EGTA+F W+RGHLFDY+SAV+IY
Sbjct: 321 YGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIY 380
Query: 279 EMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFI 338
EMCV+EP ATV VR QEKLKYPPYPLSTIEL+KRASRYFRMSSEHTMKVAE+LYQAGFI
Sbjct: 381 EMCVEEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFI 440
Query: 339 SYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
SYPRTETD+FS T+LH IV EQ+ HP+WG YAQRLLD A LWRNP +GGHDDKAHPPI
Sbjct: 441 SYPRTETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPI 500
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
HPTKFS+GE+ W+ +H KLYELVVRHFLAC SQPAVGAET VEI+IAGE F+ SGRV+LA
Sbjct: 501 HPTKFSAGETNWTDNHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLA 560
Query: 459 KNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
KNYLDVYRF+SWGG ++PTY+ GQQ AGIGT
Sbjct: 561 KNYLDVYRFDSWGGTLLPTYIIGQQ------------------------------AGIGT 590
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
DATMHDHIKKLLDR YA KDANTRF+PTN+GEALVMGYD+MGYELWKP LRSMME+DMK
Sbjct: 591 DATMHDHIKKLLDRCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKS 650
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQ-QAAGEVVRQ 637
VS+G KSK++VL NCLQQMKACFLDAR KVKL +AMG FF R S ++ Q + E VR
Sbjct: 651 VSIGTKSKSEVLENCLQQMKACFLDARANKVKLFDAMGTFFARSSRPVNETQNSIETVRP 710
Query: 638 CGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLI 697
C C ES M LK+ CRN VWLP S+S AAVT C +C PGPVY I
Sbjct: 711 CAACNESEMFLKQR-------------PCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKI 757
Query: 698 QFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSR----IPARGRGPTASSNNGQ 753
QFKFR+ +IPP F+V+HLGCIGGCD+ L++L+E+ GS PAR + TAS +
Sbjct: 758 QFKFRRRDIPPNFDVDHLGCIGGCDDILKELMELSRFGSHSQTATPARNQSQTAS--GVR 815
Query: 754 QSNHRQRACIYCQQMGHSSSDCPSQFSGSRNARANGMNPQ 793
Q + RQ H+S QF+ N + +NPQ
Sbjct: 816 QGSSRQDL--------HTSFHPAVQFT---NGQTPVVNPQ 844
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/99 (73%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSK-NQGLRIREGRSRYNKIYEFNYSIRGQPCHML 60
GGG I VLNVAEKPSVAKSVA ILS+ + G+R REGRSRYN+++EF+YSI G+ CHML
Sbjct: 4 GGGGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHML 63
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPE 99
+TSVTGHLMEL+FD+R+R+WHSCDPADL+HAPVRK VP+
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQ 102
>gi|218192151|gb|EEC74578.1| hypothetical protein OsI_10148 [Oryza sativa Indica Group]
Length = 981
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/655 (69%), Positives = 519/655 (79%), Gaps = 49/655 (7%)
Query: 100 DKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDR 159
DK+DIK+TLEEEAR+CQWLVLWLDCDREGENIA+EVI++C N L + RARFSALIDR
Sbjct: 201 DKQDIKRTLEEEARKCQWLVLWLDCDREGENIAYEVIDICAGANSRLNIWRARFSALIDR 260
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLS 218
EIH+AVQ+L PN+ FADAVDARQEIDLRIGASFTRFQTMLLK+ F +D DDRN++LS
Sbjct: 261 EIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILS 320
Query: 219 YGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIY 278
YGPCQFPTLGF+VER+WEIQAHE EEFWTINCSH S+EGTA+F W+RGHLFDY+SAV+IY
Sbjct: 321 YGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIY 380
Query: 279 EMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFI 338
EMCV+EP ATV VR QEKLKYPPYPLSTIEL+KRASRYFRMSSEHTMKVAE+LYQAGFI
Sbjct: 381 EMCVEEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFI 440
Query: 339 SYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
SYPRTETD+FS T+LH IV EQ+ HP+WG YAQRLLD A LWRNP +GGHDDKAHPPI
Sbjct: 441 SYPRTETDNFSPNTDLHSIVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPI 500
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
HPTKFS+GE+ W+ +H KLYELVVRHFLAC SQPAVGAET VEI+IAGE F+ SGRV+LA
Sbjct: 501 HPTKFSAGETNWTDNHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLA 560
Query: 459 KNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
KNYLDVYRF+SWGG ++PTY+ GQQ AGIGT
Sbjct: 561 KNYLDVYRFDSWGGTLLPTYIIGQQ------------------------------AGIGT 590
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
DATMHDHIKKLLDR YA KDANTRF+PTN+GEALVMGYD+MGYELWKP LRSMME+DMK
Sbjct: 591 DATMHDHIKKLLDRCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKS 650
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQ-QAAGEVVRQ 637
VS+G KSK++VL NCLQQMKACFLDAR KVKL +AMG FF R S ++ Q + E VR
Sbjct: 651 VSIGTKSKSEVLENCLQQMKACFLDARANKVKLFDAMGTFFARSSRPVNETQNSIETVRP 710
Query: 638 CGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLI 697
C C ES M LK+ CRN VWLP S+S AAVT C +C PGPVY I
Sbjct: 711 CAACNESEMFLKQR-------------PCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKI 757
Query: 698 QFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSR----IPARGRGPTAS 748
Q KFR+ +IPP F+V+HLGCIGGCD+ L++L+E+ GS PAR + TAS
Sbjct: 758 QSKFRRRDIPPNFDVDHLGCIGGCDDILKELMELSRFGSHSQTATPARNQSQTAS 812
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/99 (73%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSK-NQGLRIREGRSRYNKIYEFNYSIRGQPCHML 60
GGG I VLNVAEKPSVAKSVA ILS+ + G+R REGRSRYN+++EF+YSI G+ CHML
Sbjct: 4 GGGGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHML 63
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPE 99
+TSVTGHLMEL+FD+R+R+WHSCDPADL+HAPVRK VP+
Sbjct: 64 VTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQ 102
>gi|296088526|emb|CBI37517.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/445 (77%), Positives = 386/445 (86%), Gaps = 2/445 (0%)
Query: 356 GIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY 415
GIVQEQ+GHP WG YAQRLLD AGLWRNP +GGHDDKAHPPIHPTKFS+GES WSQDH
Sbjct: 25 GIVQEQLGHPIWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESGWSQDHQ 84
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
+LYELVVRHFLACVSQPAVGAETIVEI+IAGE FS+SGRVI+AKNYLDVYRFESWGG +I
Sbjct: 85 RLYELVVRHFLACVSQPAVGAETIVEIDIAGESFSSSGRVIIAKNYLDVYRFESWGGSMI 144
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
PTYV GQQFIPTTLTLDSGVTRPPPLLSEADLL+CMDKAGIGTDATMHDHIKKLLDRFYA
Sbjct: 145 PTYVFGQQFIPTTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRFYA 204
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
KD+NTRF+PTN+GEALVMGYDDMGYELWKP LRSMME DMK VS+G K + +VL CL+
Sbjct: 205 TKDSNTRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLE 264
Query: 596 QMKACFLDARLKKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRD 653
QMKACFLDARL KVKLLEAM +FFER S G++Q G+VVRQC +CQES+MVL++ D
Sbjct: 265 QMKACFLDARLNKVKLLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPD 324
Query: 654 GNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVN 713
GN MVGCL +PQCRN VWLPGS+SEAA+TT +CN CTPGPVY IQFKFR+ EIPP +N++
Sbjct: 325 GNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYNID 384
Query: 714 HLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSS 773
HLGC+ GCDE LRQL EICGTGSRI ARGRG ASS N Q+SN RQ ACI+C Q GHSS+
Sbjct: 385 HLGCVCGCDEILRQLTEICGTGSRISARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSN 444
Query: 774 DCPSQFSGSRNARANGMNPQSGMTA 798
DCPS+ SRN++++ N SG ++
Sbjct: 445 DCPSRVPRSRNSQSHRTNMPSGESS 469
>gi|74140438|dbj|BAE42369.1| unnamed protein product [Mus musculus]
gi|74213102|dbj|BAE41691.1| unnamed protein product [Mus musculus]
Length = 773
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/777 (45%), Positives = 497/777 (63%), Gaps = 25/777 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 10 KVLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 68
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E CQ LV+W DCDREG
Sbjct: 69 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREG 128
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 129 ENIGFEIIHVCKAVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 188
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 189 IGAAFTRFQTLRLQRIFPEVLAGQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 245
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 246 KVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 305
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 306 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWG 365
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 366 AFAQTILERGGPTPRN---GSKSDQAHPPIHPTKYTSS---LQGDDRRLYEFIVRHFLAC 419
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 420 CSQGAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPST 479
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 480 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 539
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 540 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKA 599
Query: 609 VKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ + ER + ++ A E VR+C C + +MVLK + G + C+ FP
Sbjct: 600 KKLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCMGFP 658
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ + C+ C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 659 ECRSAVWFPDSVLEASRDNSVCSVCQPPPVYRLKLKFKRGSLPPAMPLEFVGCIGGCDET 718
Query: 725 LRQLIEICGTGSRIP-----ARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
L+++ G R P A + P A S++ + + R C C Q GH+ + CP
Sbjct: 719 LKEIF-----GLRFPRALPRAASKRPRAGSSDAGSTVKKPRKCSLCHQPGHTRTFCP 770
>gi|351707720|gb|EHB10639.1| DNA topoisomerase 3-alpha [Heterocephalus glaber]
Length = 991
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/760 (46%), Positives = 493/760 (64%), Gaps = 22/760 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYYLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF R+RKWHSC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMRFRKWHSCNPLVLFEAEIEKYCPENFIDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPSLQVLRARFSEITPGAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKVFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H E+G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHEDGAVDFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q PDWG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLMALVEQQTQDPDWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++S D +LYEL+VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTSN---LQGDEQRLYELIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G QF P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVARGLMILARNYLDVYPYDRWSDKLLPVYEEGSQFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 505 IEMLDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + ++VLK + G +GC +FP
Sbjct: 625 KKLDEALSQYFGEGTETPQQEEIYPAMPEPIRKCPQCNK-DIVLKTKKSGGFYLGCTSFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR A+W P SV E + + C C P PVY ++FKF++ +PP + +GCIGGCDET
Sbjct: 684 ECRLAMWFPDSVLEVSRDESVCPVCQPAPVYRLKFKFKRGSLPPTIPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPT-----ASSNNGQQSNHRQ 759
L +++ + SR P R P+ + S N S+H Q
Sbjct: 744 LNEILGV--QFSRGPPRSSQPSGHLQASQSMNRMDSSHSQ 781
>gi|344298058|ref|XP_003420711.1| PREDICTED: DNA topoisomerase 3-alpha [Loxodonta africana]
Length = 1006
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/797 (45%), Positives = 503/797 (63%), Gaps = 29/797 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NSRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E ++CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFLDIKKTLERETQQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV L + RARFS + R I A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPSLPVLRARFSEITPRAIRLACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPETFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H+ E+G F+W R LF++T+ +++Y++C+++PTATV +V + K K+ P L T+
Sbjct: 271 KVTHEHEDGIVEFNWKRHRLFNHTACLVLYQLCMEDPTATVVEVCSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++QI P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAERLYTQGYISYPRTETNIFPKDLNLTALVEQQIQDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK +S D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKHTSN---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F SG ++LA+NYLDVY ++ W +IP Y G F P+T
Sbjct: 445 CSQNAQGQETTVEIDIAQERFLASGLMVLARNYLDVYPYDHWSDKIIPVYERGSSFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKCVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK + G + C+ FP
Sbjct: 625 KKLDEALSQYFGEGAEVPQQEEIYPAMPEPIRKCPQCNK-DMVLKTRKSGGFYLSCVGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+A+W P SV EA+ + C C P PVY ++ KF+ IPP + +GCIGGCDET
Sbjct: 684 KCRSAIWFPDSVLEASRDESVCPVCQPQPVYRLKLKFKPGSIPPTMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRN 784
LR+++++ R P +GP + Q + +A +M S P Q G+R
Sbjct: 744 LREILDL-----RFP---QGPPRALQPASQPSGYSQASQSLNRMDSSQQVHP-QLPGNRQ 794
Query: 785 -----ARANGMNPQSGM 796
A A + P + +
Sbjct: 795 TGPPRALAQALPPPAAI 811
>gi|301775497|ref|XP_002923167.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Ailuropoda melanoleuca]
Length = 959
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/755 (46%), Positives = 488/755 (64%), Gaps = 22/755 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KILCVAEKNDAAKGIADLLS-NGRMRRREGFSKFNKIYEFDYRLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKWHSC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWHSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VCRAV L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCRAVKPSLPVLRARFSEITPRAVRAACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGVVEFNWKRHRLFNHTACLVLYQLCMEDPRATVVEVRSKAKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLTVLVEQQTQDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTGS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKTLPVYERGACFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++
Sbjct: 505 VAMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKWVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQAA----GEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+A E +R+C C + +MVLK ++G + C FP
Sbjct: 625 KKLDEALAQYFGEGAEVAQQEAIYPSLPEPIRKCPQCNK-DMVLKTKKNGGFYLSCTGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+A+W P SV EA+ C C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 684 ECRSAMWFPDSVLEASRDGTVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
LR+++++ SR P P+AS Q SN+ Q
Sbjct: 744 LREILDL--RFSRGP-----PSASQPASQPSNYLQ 771
>gi|384254048|gb|EIE27522.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 919
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/746 (47%), Positives = 485/746 (65%), Gaps = 22/746 (2%)
Query: 6 RPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVT 65
R + VLNVAEK S+AK V+ LS N R S YN ++ F Y++ G PC ML TSV
Sbjct: 3 RTLTVLNVAEKNSIAKQVSAALSNNSATRGSTC-SNYNPLFSFPYALNGMPCEMLFTSVA 61
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHLMELDF E ++KWHSC P +LY APV K VP+DKK +++ L+E+AR+CQWLVLWLDCD
Sbjct: 62 GHLMELDFPEAFKKWHSCSPLELYGAPVLKCVPQDKKLVERNLKEQARKCQWLVLWLDCD 121
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGENIAFEVI+VC N L+++RA+FSAL+ RE+ ++VQNL P++ + AVDARQEI
Sbjct: 122 REGENIAFEVIDVCIKANPRLLIKRAKFSALVRRELERSVQNLGVPDENLSKAVDARQEI 181
Query: 186 DLRIGASFTRFQTMLLK---NFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
DLRIGASFTRFQT+LL+ N+ + D+R + SYGPCQFPTLG +V+R WEIQAH +
Sbjct: 182 DLRIGASFTRFQTLLLQEKFNWEEHGIHDERP-IFSYGPCQFPTLGLIVQRQWEIQAHVA 240
Query: 243 EEFWTINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E FW I +++ EG + T W R L+D+ A I+YE CV P ATVTKV ++KL++P
Sbjct: 241 EPFWYIYAMYRAPEGQSCTLHWQRDRLYDHVIATILYETCVDAPLATVTKVDARQKLRWP 300
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T+ L+K A + R+ E MK+AE+LYQ GFISYPRTETD F +L +V+E
Sbjct: 301 PLPLATLSLQKEAITHLRLPGERMMKLAEELYQEGFISYPRTETDVFDPAYDLKALVREH 360
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESR--WSQDHYKLYE 419
+ WG +AQR+ + +W P GGHDD AHPPIHPT++S+ ++ W + +LYE
Sbjct: 361 VNDARWGQHAQRI--DSGEMWAAPRGGGHDDHAHPPIHPTRWSAPDANQGWDPNKRRLYE 418
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTY 478
+VR FLA S+PAVG ET VE+ IA E F T+G ++ +N+++V+ + WGG +P +
Sbjct: 419 FIVRSFLASCSKPAVGFETQVEVTIAAETFRTTGLMVKERNWMEVFPWARWGGNDNLPVF 478
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
Q F+PT L L G+T+PPP +SE DL+S M++ GIGTDAT+ DHI+K LDR YA+KD
Sbjct: 479 AVNQTFMPTELLLKDGMTQPPPKMSERDLISAMERHGIGTDATVADHIQKQLDRGYALKD 538
Query: 539 ANTRFAPTNIGEALVMGYDDMGYE-LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
A F+PT +GEALV Y MG LW+P LR +E ++ EV+ G + K +VL +Q
Sbjct: 539 AAQLFSPTALGEALVASYHKMGLSNLWQPTLRGAIEHNITEVARGLRPKQEVLDEAVQHF 598
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAA------GEVVRQCGICQESNMVLKKS 651
+ ++ A K+ +LE +G FF +GG A G+ + C C N++L +
Sbjct: 599 RGDYIAAAGKQAMMLEEVGRFFGPRAGGGGPGEAGGALPPGDPIGACASCG-LNLMLCQP 657
Query: 652 RDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCT--PGPVYLIQFKFRQHEIPPG 709
+G V C P CR V+ P A ++ C +C G + I F+ R+ IPPG
Sbjct: 658 AEGTPFVACSGAPLCRQRVYFPRPTLAADISDQPCATCQLDRGGLRKISFRLRRAAIPPG 717
Query: 710 FNVNHLGCIGGCDETLRQLIEICGTG 735
F + + C+ CD+ + L E CGT
Sbjct: 718 FEADMVACV-LCDQRFKDLCEACGTA 742
>gi|348511454|ref|XP_003443259.1| PREDICTED: DNA topoisomerase 3-alpha [Oreochromis niloticus]
Length = 1054
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/727 (47%), Positives = 485/727 (66%), Gaps = 15/727 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK ++ I+S + R REG S++NKIYE+ Y + GQ + MTSV+GHL+
Sbjct: 53 VLCVAEKNDAAKGISEIMSSGRANR-REGMSKFNKIYEYEYHLFGQNVTVTMTSVSGHLL 111
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L+F ++KWHSC+P L+ A V K+ P++ IK+TLE+E R+CQ LV+W DCDREGE
Sbjct: 112 GLEFKAPFQKWHSCNPVLLFDAEVEKYCPDNMLQIKRTLEKEVRQCQALVIWTDCDREGE 171
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I+VC+AV +L + RA+FS + I +A + L +P+ +DAVD RQE+DLRI
Sbjct: 172 NIGFEIIDVCKAVKPNLQVFRAKFSEITPNSIRRACETLTEPDANVSDAVDVRQELDLRI 231
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GASFTRFQT+ L+ +S+ N ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 232 GASFTRFQTLRLQKIFPESLA---NQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIK 288
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H+ EE F+W R LF++T+ +++Y++C+++P ATVT V + K K+ P PL T+E
Sbjct: 289 VIHEVEEDCVDFNWKRNRLFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVE 348
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR R+S++ TMK+AE LY GFISYPRTET+ F L +V++Q P WG
Sbjct: 349 LEKLASRKLRISAKETMKIAEKLYTQGFISYPRTETNIFPPNLALTPLVEQQTHSPVWGA 408
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+LD G NP G + D+AHPPIHPTKF++ + ++YE +VRHFLACV
Sbjct: 409 FAQRVLDQPGG--PNPRQGKNSDQAHPPIHPTKFTNA---LQGNEGRVYEFIVRHFLACV 463
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A+G ET+V+I+IA E FS SG +I+A+NYLDVY ++ W VIP Y G QF P+ +
Sbjct: 464 SQDALGQETVVDIDIAQEKFSASGLMIIARNYLDVYPYDRWSTKVIPVYEQGSQFQPSAI 523
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL+S M+K GIGTDAT +HI+ + R Y A+ RF P +G
Sbjct: 524 EMVDGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFTPGELG 583
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GY+ MGYE+ KPNLR+ +E+D+K VS G K K VL + +Q+ K F+++ K
Sbjct: 584 MGLVEGYNSMGYEMSKPNLRAELEADLKLVSEGQKDKQSVLQHHIQKYKTVFIESVRKAK 643
Query: 610 KLLEAMGIFF-ERWSGGEDQQAAGEV---VRQCGICQESNMVLKKSRDGN-LMVGCLAFP 664
KL EA+ + E +Q E+ VR+C C +MVLKK R+GN + C+ FP
Sbjct: 644 KLDEALSPYLGAAHEIPEAEQQDMEIPLPVRKCPNCGR-DMVLKKKREGNGKYLSCVGFP 702
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
C+ AVW P V E + + C +C P P+++++FKFR+ +PP + +GCIGGCDET
Sbjct: 703 ACKTAVWFPDVVLEVSRDESICPTCQPHPIHMLKFKFRRGSLPPMMPLEFVGCIGGCDET 762
Query: 725 LRQLIEI 731
LR+++++
Sbjct: 763 LREVLDL 769
>gi|348560295|ref|XP_003465949.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cavia porcellus]
Length = 1002
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/752 (46%), Positives = 484/752 (64%), Gaps = 17/752 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYYLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKWHSC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWHSCNPLVLFEAGIEKYCPENFIDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV L + RARFS + + A QNL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPSLQVLRARFSEITPHAVRTACQNLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKVFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H E+G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHEDGIVDFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR +++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLKINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLMALVEQQTQDPHWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
P+AQ +L+ RN G D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 391 PFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTSN---LQGDERRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F +G ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIARERFVANGLTILARNYLDVYPYDRWSDKLLPVYEEGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 505 IEMLDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFF----ERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F E E A E + +C C + ++VLK + G + C FP
Sbjct: 625 KKLDEALSQYFGEGTETLQQEEIYPAMPEPILKCPQCNK-DLVLKTKKSGGFYLSCTGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR A+W P SV E + + C C P PVY ++F+F++ +PP + +GCIGGCDET
Sbjct: 684 ECRLAMWFPDSVLEVSRDGSVCPVCQPAPVYRLKFRFKRGSLPPTMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
L++++ + SR P RG P+ Q N
Sbjct: 744 LKEILGL--RFSRGPPRGSQPSGHLQASQSVN 773
>gi|73956193|ref|XP_546656.2| PREDICTED: DNA topoisomerase 3-alpha [Canis lupus familiaris]
Length = 989
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/755 (46%), Positives = 491/755 (65%), Gaps = 17/755 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KILCVAEKNDAAKGIADLLS-NGRMRRREGFSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ IKKTL+ E ++CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVGIKKTLQRETQQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VCRAV +L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCRAVKPNLQVLRARFSEITPRAVRVACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++PTATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPTATVVEVRSKSKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F +L +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTSS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQA----AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+A E +++C C + +MVLK ++G + C FP
Sbjct: 625 KKLDEALSQYFGEGTEVAQQEAIYPSMPEPIKKCPQCNK-DMVLKTKKNGGFYLSCTGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ + C C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 684 ECRSAVWFPDSVLEASRDDSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
LR+++++ SR P R P + +N Q++ Q
Sbjct: 744 LREILDL--RFSRGPPRASQPASQPSNYLQASQSQ 776
>gi|327287266|ref|XP_003228350.1| PREDICTED: DNA topoisomerase 3-alpha-like [Anolis carolinensis]
Length = 997
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/727 (48%), Positives = 475/727 (65%), Gaps = 15/727 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK A+ +A ILS N +R REG S++NKIYE Y + GQ ++MTSV+GHL
Sbjct: 39 KVLCVAEKNDAARGIADILS-NSRMRRREGFSKFNKIYECQYHLLGQNVTVVMTSVSGHL 97
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF +RKWHSC+P L+ A + K PE+ DIK+TLE E ++CQ LV+W DCDREG
Sbjct: 98 LAHDFKLPFRKWHSCNPLVLFDAEIEKFCPENYLDIKRTLEREVQQCQALVIWTDCDREG 157
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FEVI+VC+AV L + RARFS + R I A +NL P+Q DAVD RQE+DLR
Sbjct: 158 ENIGFEVIDVCKAVKPSLQVFRARFSEITPRAIKTACENLTQPDQNVNDAVDVRQELDLR 217
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQTM L+ + + + ++SYG CQFPTLGFVVER+ IQA +E F+ I
Sbjct: 218 IGAAFTRFQTMRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVAETFYKI 274
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H EEGT FSW R LF++T+ +I+Y+MC+++P ATV +V + K K+ P PL T+
Sbjct: 275 KVTHDHEEGTVDFSWKRNRLFNHTACLILYQMCMEDPLATVVEVGSRPKSKWRPLPLDTV 334
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR +++++ TMK+AE LY G+ISYPRTET+ F NL +VQ Q P WG
Sbjct: 335 ELEKLASRKLKINAKETMKIAEKLYTQGYISYPRTETNIFPKDLNLPNLVQLQTLDPRWG 394
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQR+LD P SG D+AHPPIHPTK ++ + +LYE +VRHFLAC
Sbjct: 395 AFAQRILDQGGP---TPRSGTKSDQAHPPIHPTKHATN---LQGNDQRLYEFIVRHFLAC 448
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI++A E F G +ILA+NYL+VY +E W VIP Y G +F P+T
Sbjct: 449 CSQDAKGQETTVEIDVANERFVAHGLMILARNYLEVYPYEKWSDKVIPVYEKGSRFQPST 508
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL+S M+K GIGTDAT +HI+ + R Y + RF P +
Sbjct: 509 VEMVEGETSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTPDQRFVPGEL 568
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E D+K + G K KA VL +Q+ K F++A K
Sbjct: 569 GMGLVEGYDSMGYEMSKPDLRAELEHDLKLICEGKKGKAVVLREQVQKYKRVFIEAVQKA 628
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + + ++ A + VR+C C S+MVLK + G + CL +P
Sbjct: 629 KKLDEALAQYFGQGAPLTQEEEIYPALPDPVRKCPQCN-SDMVLKTKKSGGFYLSCLGYP 687
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
C++AVW P SV E + + C+ C P PV+ ++ KF++ +PP + +GCIGGCDET
Sbjct: 688 SCKSAVWFPDSVLEVSKDDSVCDVCRPHPVHRLKLKFKRGGLPPMMPLEFVGCIGGCDET 747
Query: 725 LRQLIEI 731
LR+++++
Sbjct: 748 LREVLDL 754
>gi|410980097|ref|XP_003996416.1| PREDICTED: DNA topoisomerase 3-alpha [Felis catus]
Length = 987
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/755 (46%), Positives = 486/755 (64%), Gaps = 22/755 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KILCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKWHSC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWHSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VCRAV L + RARFS + R + A +NL +P+ +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCRAVKPSLPVLRARFSEITPRAVQTACENLTEPDSRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++P ATV +V+ + K K+ P L T+
Sbjct: 271 KVTHDHKDGVVEFNWKRHRLFNHTACLVLYQLCMEDPRATVVEVKSKAKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTSS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KPNLR+ +E+D+K + G K K VL +Q+ K F +A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPNLRAELEADLKLICEGKKDKLVVLRQQVQKYKQVFTEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +++C C + +MVL+ + G + C FP
Sbjct: 625 KKLDEALSQYFGEGAEVAQQEAIYPAMPEPIKKCPQCNK-DMVLRTKKSGGFYLSCTGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+A+W P SV EA+ C C P PVY ++FKF++ +PP + +GC+GGCDET
Sbjct: 684 ECRSAMWFPDSVLEASRDGTVCPVCQPHPVYRLKFKFKRGSLPPTMPLEFVGCVGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
L +L+++ R +RG P AS Q SNH Q
Sbjct: 744 LMELLDL-----RF-SRG-APRASQPASQPSNHLQ 771
>gi|74186931|dbj|BAE20515.1| unnamed protein product [Mus musculus]
Length = 954
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/755 (46%), Positives = 485/755 (64%), Gaps = 26/755 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++SG D +LYE +VRHFLAC
Sbjct: 391 AFAQTILERGGPTPRN---GSKSDQAHPPIHPTKYTSG---LQGDDRRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ + ER + ++ A E VR+C C + +MVLK + G + C+ FP
Sbjct: 625 KKLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ + C+ C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 684 ECRSAVWFPDSVLEASRDNSVCSVCQPPPVYRLKLKFKRGSLPPAMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
L+++ + R P A Q S H Q
Sbjct: 744 LKEIFGL-----------RFPRALPRASQPSGHLQ 767
>gi|6678403|ref|NP_033436.1| DNA topoisomerase 3-alpha [Mus musculus]
gi|6686029|sp|O70157.1|TOP3A_MOUSE RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|3061308|dbj|BAA25662.1| topoisomerase III [Mus musculus]
gi|71043442|gb|AAH99689.1| Topoisomerase (DNA) III alpha [Mus musculus]
Length = 1003
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/755 (46%), Positives = 485/755 (64%), Gaps = 26/755 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++SG D +LYE +VRHFLAC
Sbjct: 391 AFAQTILERGGPTPRN---GSKSDQAHPPIHPTKYTSG---LQGDDRRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ + ER + ++ A E VR+C C + +MVLK + G + C+ FP
Sbjct: 625 KKLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ + C+ C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 684 ECRSAVWFPDSVLEASRDNSVCSVCQPPPVYRLKLKFKRGSLPPAMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
L+++ + R P A Q S H Q
Sbjct: 744 LKEIFGL-----------RFPRALPRASQPSGHLQ 767
>gi|417405552|gb|JAA49485.1| Putative dna topoisomerase iii beta [Desmodus rotundus]
Length = 999
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/755 (46%), Positives = 483/755 (63%), Gaps = 19/755 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF R+RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMRFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FEVI VC+AV L + RARFS + R I A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEVIHVCKAVKPTLQVLRARFSEITPRAIRMACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H +G FSW R LF++T+ +++Y +C+++P ATV +V + K K+ P L T+
Sbjct: 271 KVTHDHRDGIVEFSWKRHRLFNHTACLVLYHLCMEDPMATVVEVSSKAKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNVFPKDLNLTALVEQQTPDPHWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 391 SFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTSS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 MQMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDAMGYEMSKPDLRAELEADLKLICEGKKDKCVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQAAG----EVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+A E VR+C C + +MVLK + G + C FP
Sbjct: 625 KKLDEALSQYFGEGAEVAQQEAIYPAMLEPVRKCPQCNK-DMVLKTKKSGGFYLSCTGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+ +W P SV EA+ + C C P PVY ++FKF++ +PP + +GCIGGCDET
Sbjct: 684 ECRSVMWFPDSVLEASRDASVCPVCQPHPVYRLKFKFKRGSLPPTMPLEFIGCIGGCDET 743
Query: 725 LRQLIEI---CGTGSRIPARGRGPTASSNNGQQSN 756
L++++ + GT +P + P+ G+ SN
Sbjct: 744 LKEILGLRFSQGTPRAVPTASQ-PSGYLQAGRSSN 777
>gi|338711250|ref|XP_001918241.2| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Equus caballus]
Length = 987
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/727 (47%), Positives = 474/727 (65%), Gaps = 15/727 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK AK +A +LS + R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 15 KILCVAEKNDAAKEIADLLSDGRARR-REGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 73
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 74 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 133
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 134 ENIGFEIIHVCKAVKPSLQVLRARFSEITPRAVRTACENLTEPDQRVSDAVDVRQELDLR 193
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 194 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHKI 250
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 251 KVTHDHKDGIVEFGWKRHRLFNHTACLVLYQLCMEDPRATVVEVRSKAKSKWRPQALDTV 310
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 311 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTALVEQQTPDPRWG 370
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 371 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTSN---LQGDEQRLYEFIVRHFLAC 424
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G VILA+NYLDVY ++ W +P Y G F P+T
Sbjct: 425 CSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSNKTLPVYERGFCFQPST 484
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++
Sbjct: 485 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHL 544
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 545 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFVVLRQQVQKYKQVFIEAVAKA 604
Query: 609 VKLLEAMGIFFERWSGGEDQQA----AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+A E +R+C C + +MVLK + G + C FP
Sbjct: 605 KKLDEALSQYFGEGAEVPQQEAIYPTVPEPIRKCPQCNK-DMVLKTKKSGGFYLSCTGFP 663
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ + C C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 664 ECRSAVWFPSSVLEASRDGSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVGCIGGCDET 723
Query: 725 LRQLIEI 731
LR+++++
Sbjct: 724 LREILDL 730
>gi|440913082|gb|ELR62586.1| DNA topoisomerase 3-alpha [Bos grunniens mutus]
Length = 1002
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/726 (47%), Positives = 474/726 (65%), Gaps = 14/726 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK AK +A +LS + +R REG SR+NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGR-MRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE EA++CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FEVI VC+AV L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEVIHVCKAVKPSLQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H +G FSW R LF++T+ +++Y+MC+++P ATV +VR + K K+ P L T+
Sbjct: 271 RVTHDHRDGVVEFSWKRHRLFNHTACLVLYQMCMEDPRATVVEVRSKAKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F +L +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+A+ +L+ RN G D+AHPPIHPTK++ D +LYEL+VRHFLAC
Sbjct: 391 AFARNILERGGPTPRN---GNKSDQAHPPIHPTKYTDS---LQGDEQRLYELIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYEQGTCFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKLVVLHQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ +F + Q A E +R+C C +MVLK + G +GC FP+
Sbjct: 625 RKLDEALSQYFGAATEVAPQDALPAVPEPIRKCPQCSR-DMVLKTRKSGGFYLGCTGFPE 683
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR+AVW P SV EA+ + C C P PVY ++FKF++ +PP + +GCIGGCDETL
Sbjct: 684 CRSAVWFPDSVLEASRDVSVCPVCQPHPVYRLKFKFKRGSLPPTMPLEFVGCIGGCDETL 743
Query: 726 RQLIEI 731
R+++ +
Sbjct: 744 REILAL 749
>gi|410902017|ref|XP_003964491.1| PREDICTED: DNA topoisomerase 3-alpha-like [Takifugu rubripes]
Length = 967
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/727 (47%), Positives = 482/727 (66%), Gaps = 15/727 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK ++ I+S N R REG S++NKIYE+ Y + GQ +LMTSV+GHL+
Sbjct: 11 VLCVAEKNDAAKGISDIMS-NGRFRRREGMSKFNKIYEYEYHLFGQNVTVLMTSVSGHLL 69
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L+F ++KWHSC P L+ A V K+ PE+ IK+TLE+E ++CQ L++W DCDREGE
Sbjct: 70 GLEFKTPFQKWHSCSPVLLFDAEVEKYCPENMVQIKRTLEKEVKQCQLLIIWTDCDREGE 129
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I+VC+AV ++ + RA+FS + I +A L +P+ +DAVD RQE+DLRI
Sbjct: 130 NIGFEIIDVCKAVKPNIQVLRAKFSEITPNSIRRACDTLSEPDSKVSDAVDVRQELDLRI 189
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GASFTRFQT+ L+ +S+ N ++SYG CQFPTLGFVVER+ IQ+ E F+ I
Sbjct: 190 GASFTRFQTLRLQKIFPESLA---NQLISYGSCQFPTLGFVVERFKAIQSFIPETFYKIK 246
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H+ EE T FSW R LF++T+ +++Y++C+++P ATVT V + K K+ P PL T+E
Sbjct: 247 VLHEVEEDTVEFSWKRNRLFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVE 306
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
+EK ASR R+S++ TMK+AE LY GFISYPRTET+ F L +V+EQ WG
Sbjct: 307 MEKLASRKLRISAKETMKIAEKLYTRGFISYPRTETNIFPPNLALGPLVEEQTQSSVWGA 366
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+L+ G NP G D+AHPPIHPTK SS + +LYE +VRHFLACV
Sbjct: 367 FAQRVLEQPGG--PNPRQGKKSDQAHPPIHPTKHSSS---LQGNEGRLYEFIVRHFLACV 421
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A+G ET+V+++IA E FSTSG +I A+NYLDVY ++ W +IP Y G QF PT +
Sbjct: 422 SQDALGQETVVDVDIAQEKFSTSGLMITARNYLDVYPYDRWTTKLIPVYEQGSQFQPTAI 481
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P +G
Sbjct: 482 EMVDGQTSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKSRMYVGLTSDQRFLPGELG 541
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GY+ MGYE+ KPNLR+ +E+D+K VS G K K VL + +Q+ K F+++ K
Sbjct: 542 MGLVEGYNSMGYEMSKPNLRAELEADLKLVSEGRKDKWSVLQHHIQKYKTVFIESVHKAK 601
Query: 610 KLLEAMGIFF-ERWSGGEDQQAAGEV---VRQCGICQESNMVLKKSRDGN-LMVGCLAFP 664
KL EA+ + E+QQ E+ +R+C C +MVLKK R+GN + C+ +P
Sbjct: 602 KLDEALSPYLGAAQEIPEEQQQDMEIPLPIRKCPHCGR-DMVLKKKREGNGKYLTCVGYP 660
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
C+ AVW P V E + + C +C P PV++++ KFR+ +PP + +GCIGGCDET
Sbjct: 661 ACKTAVWFPDMVLEVSRDQSICPTCRPAPVHMLKLKFRRGSLPPMMPLEFVGCIGGCDET 720
Query: 725 LRQLIEI 731
LR+++++
Sbjct: 721 LREVLDL 727
>gi|10835218|ref|NP_004609.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|2501242|sp|Q13472.1|TOP3A_HUMAN RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|1292912|gb|AAB03694.1| DNA topoisomerase III [Homo sapiens]
gi|30353789|gb|AAH51748.1| Topoisomerase (DNA) III alpha [Homo sapiens]
gi|119576050|gb|EAW55646.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|119576052|gb|EAW55648.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|119576053|gb|EAW55649.1| topoisomerase (DNA) III alpha, isoform CRA_a [Homo sapiens]
gi|158259313|dbj|BAF85615.1| unnamed protein product [Homo sapiens]
gi|311347058|gb|ADP90454.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347060|gb|ADP90455.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347062|gb|ADP90456.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347064|gb|ADP90457.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347066|gb|ADP90458.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347068|gb|ADP90459.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347070|gb|ADP90460.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347072|gb|ADP90461.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347074|gb|ADP90462.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347076|gb|ADP90463.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347078|gb|ADP90464.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347080|gb|ADP90465.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347082|gb|ADP90466.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347084|gb|ADP90467.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347086|gb|ADP90468.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347088|gb|ADP90469.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347090|gb|ADP90470.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347092|gb|ADP90471.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347094|gb|ADP90472.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347096|gb|ADP90473.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347098|gb|ADP90474.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347100|gb|ADP90475.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347102|gb|ADP90476.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347104|gb|ADP90477.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347106|gb|ADP90478.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347108|gb|ADP90479.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347110|gb|ADP90480.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347112|gb|ADP90481.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347114|gb|ADP90482.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347116|gb|ADP90483.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347118|gb|ADP90484.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347120|gb|ADP90485.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347122|gb|ADP90486.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347124|gb|ADP90487.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347126|gb|ADP90488.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347128|gb|ADP90489.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347130|gb|ADP90490.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347132|gb|ADP90491.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347134|gb|ADP90492.1| DNA topoisomerase 3-alpha [Homo sapiens]
gi|311347136|gb|ADP90493.1| DNA topoisomerase 3-alpha [Homo sapiens]
Length = 1001
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/793 (44%), Positives = 502/793 (63%), Gaps = 29/793 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++CV++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNN---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 625 KKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+T
Sbjct: 684 ECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDT 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP--SQFSGS 782
LR+++++ +G P R P+ Q N +M +S P S+ +GS
Sbjct: 744 LREILDLRFSGG--PPRASQPSGRLQANQSLN----------RMDNSQHPQPADSRQTGS 791
Query: 783 RNARANGMNPQSG 795
A A + P +
Sbjct: 792 SKALAQTLPPPTA 804
>gi|1292913|gb|AAB03695.1| DNA topoisomerase III [Homo sapiens]
Length = 976
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/793 (44%), Positives = 502/793 (63%), Gaps = 29/793 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 10 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 68
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 69 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 128
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 129 ENIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 188
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 189 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 245
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++CV++P ATV +VR + K K+ P L T+
Sbjct: 246 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTV 305
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 306 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 365
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 366 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNN---LQGDEQRLYEFIVRHFLAC 419
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 420 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPST 479
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 480 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 539
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 540 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 599
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 600 KKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 658
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+T
Sbjct: 659 ECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDT 718
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP--SQFSGS 782
LR+++++ +G P R P+ Q N +M +S P S+ +GS
Sbjct: 719 LREILDLRFSGG--PPRASQPSGRLQANQSLN----------RMDNSQHPQPADSRQTGS 766
Query: 783 RNARANGMNPQSG 795
A A + P +
Sbjct: 767 SKALAQTLPPPTA 779
>gi|432871570|ref|XP_004071982.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryzias latipes]
Length = 987
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/727 (47%), Positives = 484/727 (66%), Gaps = 15/727 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK ++ I+S + R REG S++NKIYE+ Y + GQ + MTSV+GHL+
Sbjct: 54 VLCVAEKNDAAKGISEIMSSGRARR-REGMSKFNKIYEYEYFLFGQNVTVTMTSVSGHLL 112
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L+F ++KWHSC+P L+ A V K+ P++ IK+TLE+E R+CQ LV+W DCDREGE
Sbjct: 113 ALEFKAPFQKWHSCNPVMLFDAEVEKYCPDNMIPIKRTLEKEVRQCQALVIWTDCDREGE 172
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FEVI+VC+AV +L + RA+FS + I +A + L++P+ +DAVD RQE+DLRI
Sbjct: 173 NIGFEVIDVCKAVKPNLQVFRAKFSEITPASIRRACETLIEPDANISDAVDVRQELDLRI 232
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GASFTRFQT+ L+ +S+ N ++SYG CQFPTLGFVVER+ I+A E F+ I
Sbjct: 233 GASFTRFQTLRLQKIFPESLA---NQLVSYGSCQFPTLGFVVERFKAIKAFIPETFYKIK 289
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H E+ T FSW R LF++T +++Y++C+++P ATVT V + K K+ P PL T+E
Sbjct: 290 VLHTLEDDTVEFSWKRNRLFNHTCCLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVE 349
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR R++++ TMK+AE LY GFISYPRTET+ F + L +V++Q WG
Sbjct: 350 LEKLASRKLRINAKETMKIAEKLYTQGFISYPRTETNIFPANLVLAPLVEQQTHSSTWGT 409
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+LD G NP G D+AHPPIHPTK++S + ++YE +VRHFLACV
Sbjct: 410 FAQRVLDQPGG--PNPRQGKKSDQAHPPIHPTKYTSS---LQGNEARVYEFIVRHFLACV 464
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A+G ET+V+I+IA E FSTSG +I+A+NYLDVY ++ W VIP Y QF P+ +
Sbjct: 465 SQDALGQETVVDIDIAQEKFSTSGLMIIARNYLDVYPYDKWNAKVIPVYEEDSQFQPSAI 524
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL+S M+K GIGTDAT +HI+ + R Y A+ RF P +G
Sbjct: 525 EMVDGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELG 584
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GY+ MGYE+ KPNLRS +E+D+K VS G K K VL + +Q+ K F+++ K
Sbjct: 585 MGLVEGYNSMGYEMSKPNLRSELEADLKLVSEGRKDKRGVLQHHIQKYKTVFIESVRKAK 644
Query: 610 KLLEAMGIFF-ERWSGGEDQQAAGEV---VRQCGICQESNMVLKKSRDG-NLMVGCLAFP 664
KL EA+ + E QQ E+ VR+C C +MVLK+ R+G + + C+ +P
Sbjct: 645 KLDEALSAYLGAALEIPEAQQQDLEMPLPVRKCPNCGR-DMVLKRKREGSSKFLTCVGYP 703
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
C+ AVW P V + + + C +C P PV++++FKFR+ +PP + +GCIGGCDET
Sbjct: 704 ACKTAVWFPDMVLDVSRDESICPTCQPSPVHMLKFKFRRGSLPPMMPLEFVGCIGGCDET 763
Query: 725 LRQLIEI 731
LR+++++
Sbjct: 764 LREVLDL 770
>gi|431914498|gb|ELK15748.1| DNA topoisomerase 3-alpha [Pteropus alecto]
Length = 1007
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/753 (46%), Positives = 487/753 (64%), Gaps = 17/753 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSVTGHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVTGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E ++CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETQQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPTLQVLRARFSEITPRAVRMACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQ+ E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQSFVPEIFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H +G F+W R LF++T+ +++Y++C+++PTATV +V + K K+ P L T+
Sbjct: 271 KVTHDHRDGIVEFNWKRHRLFNHTACLVLYQLCMEDPTATVVEVSSKAKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR +++++ TM++AE LY G+ISYPRTET+ F NL +V++QI P WG
Sbjct: 331 ELEKLASRKLKINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTALVEQQIPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++S + +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGVPTPRN---GNKSDQAHPPIHPTKYTSS---LQGEEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G VILA+NYLDVY ++ W +P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDRWSDKTLPVYERGSRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARTYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F +A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFVVLRQQVQKYKQVFTEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK + G + C+ FP
Sbjct: 625 KKLDEALSQYFGEGAEVAQQEAIYPAVPEPIRKCPQCNK-DMVLKTKKSGGFYLSCVGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ + C C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 684 ECRSAVWFPDSVLEASRDESVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNH 757
LR+++++ SR +R P + ++ Q+N
Sbjct: 744 LREILDL--RFSRGTSRTCQPASQPSSHLQANQ 774
>gi|114668853|ref|XP_511323.2| PREDICTED: DNA topoisomerase 3-alpha isoform 3 [Pan troglodytes]
gi|410209052|gb|JAA01745.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410209054|gb|JAA01746.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410209056|gb|JAA01747.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258364|gb|JAA17149.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258366|gb|JAA17150.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258368|gb|JAA17151.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410258370|gb|JAA17152.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410293004|gb|JAA25102.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410293006|gb|JAA25103.1| topoisomerase (DNA) III alpha [Pan troglodytes]
gi|410341687|gb|JAA39790.1| topoisomerase (DNA) III alpha [Pan troglodytes]
Length = 1001
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/752 (46%), Positives = 486/752 (64%), Gaps = 17/752 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H +G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHRDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 625 KKLDEALAQYFGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+T
Sbjct: 684 ECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDT 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR P R P+ Q N
Sbjct: 744 LREILDL--RFSRGPPRASQPSGRLQANQSLN 773
>gi|354467838|ref|XP_003496375.1| PREDICTED: DNA topoisomerase 3-alpha [Cricetulus griseus]
gi|344245173|gb|EGW01277.1| DNA topoisomerase 3-alpha [Cricetulus griseus]
Length = 1004
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/752 (46%), Positives = 484/752 (64%), Gaps = 17/752 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF R+RKW SC+P L+ A + K+ PE+ DIKKTLE E + CQ LV+W DCDREG
Sbjct: 94 LAHDFQMRFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITPRAVRAACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++GT F+W R LF++T+ +++Y++C+++PTATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPTATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTLDPHWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AH PIHPTK++S D +LYE +VRHFLAC
Sbjct: 391 AFAQNILERGGPTPRN---GNKSDQAHSPIHPTKYTSN---LQGDERRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G VILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFIAHGLVILARNYLDVYPYDHWSDKLLPVYEQGFSFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ + + Q+ A E VR+C C + +MVLK + G + C FP
Sbjct: 625 KKLDEALSQYLGEGTEVVQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCTGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR AVW P SV EA+ + C+ C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 684 ECRAAVWFPDSVLEASRDSTVCSICQPPPVYRLKLKFKRGSLPPTMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
L++++ + S+ P R P+ Q N
Sbjct: 744 LKEILGL--RFSQGPPRATQPSGYLQASQALN 773
>gi|296476590|tpg|DAA18705.1| TPA: topoisomerase (DNA) III alpha [Bos taurus]
Length = 1002
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/726 (47%), Positives = 473/726 (65%), Gaps = 14/726 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK AK +A +LS + +R REG SR+NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGR-MRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE EA++CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FEVI VC+AV L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEVIHVCKAVKPSLQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H +G FSW R LF++T+ +++Y+MC+++P A V +VR + K K+ P L T+
Sbjct: 271 RVTHDHRDGVVEFSWKRHRLFNHTACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F +L +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+A+ +L+ RN G D+AHPPIHPTK++ D +LYEL+VRHFLAC
Sbjct: 391 AFARNILERGGPTPRN---GNKSDQAHPPIHPTKYTDS---LQGDEQRLYELIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYEQGTCFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKLVVLHQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ +F + Q A E +R+C C +MVLK + G +GC FP+
Sbjct: 625 RKLDEALSQYFGAATEVAPQDALPAVPEPIRKCPQCSR-DMVLKTRKSGGFYLGCTGFPE 683
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR+AVW P SV EA+ + C C P PVY ++FKF++ +PP + +GCIGGCDETL
Sbjct: 684 CRSAVWFPDSVLEASRDVSVCPVCQPHPVYRLKFKFKRGSLPPTMPLEFVGCIGGCDETL 743
Query: 726 RQLIEI 731
R+++ +
Sbjct: 744 REILAL 749
>gi|380789899|gb|AFE66825.1| DNA topoisomerase 3-alpha [Macaca mulatta]
gi|380789901|gb|AFE66826.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/752 (46%), Positives = 487/752 (64%), Gaps = 17/752 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+ V +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKTVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G VILA+NYLDVY ++ W ++P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 625 KKLDEALAQYFGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+A+WLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCDET
Sbjct: 684 ECRSAMWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR P R P+ Q N
Sbjct: 744 LREILDL--RFSRGPPRAIQPSGHLQASQSLN 773
>gi|118151044|ref|NP_001071443.1| DNA topoisomerase 3-alpha [Bos taurus]
gi|117306502|gb|AAI26548.1| Topoisomerase (DNA) III alpha [Bos taurus]
Length = 1002
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/726 (47%), Positives = 473/726 (65%), Gaps = 14/726 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK AK +A +LS + +R REG SR+NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGR-MRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE EA++CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FEVI VC+AV L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEVIHVCKAVKPSLQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H +G FSW R LF++T+ +++Y+MC+++P A V +VR + K K+ P L T+
Sbjct: 271 RVTHDHRDGVVEFSWKRHRLFNHTACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F +L +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+A+ +L+ RN G D+AHPPIHPTK++ D +LYEL+VRHFLAC
Sbjct: 391 AFARNILERGGPTPRN---GNKSDQAHPPIHPTKYTDS---LQGDEQRLYELIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYEQGTCFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKLVVLHQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ +F + Q A E +R+C C +MVLK + G +GC FP+
Sbjct: 625 RKLDEALSQYFGAATEVAPQDALPAVPEPIRKCPQCSR-DMVLKTRKSGGFYLGCTGFPE 683
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR+AVW P SV EA+ + C C P PVY ++FKF++ +PP + +GCIGGCDETL
Sbjct: 684 CRSAVWFPDSVLEASRDVSVCPVCQPHPVYRLKFKFKRGSLPPTMPLEFVGCIGGCDETL 743
Query: 726 RQLIEI 731
R+++ +
Sbjct: 744 REILAL 749
>gi|71894753|ref|NP_001025807.1| DNA topoisomerase 3-alpha isoform 1 [Gallus gallus]
gi|66796185|dbj|BAD99110.1| topoisomerase III alpha [Gallus gallus]
Length = 1020
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/726 (46%), Positives = 478/726 (65%), Gaps = 15/726 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK A+ +A +LS N +R REG S++NKIYE++Y + GQ M+MTSV+GHL+
Sbjct: 38 VLCVAEKNDAARGIADLLS-NSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSGHLL 96
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF +RKWHSC+P L+ A + K+ PE+ DIK+TLE E ++CQ LV+W DCDREGE
Sbjct: 97 AHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDREGE 156
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC+AV +L + RARFS + + +A +NL P+Q +DAV+ RQE+DLRI
Sbjct: 157 NIGFEIIHVCKAVKPNLQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQELDLRI 216
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ D + D ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 217 GAAFTRFQTLRLQKIFPDILADQ---LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIK 273
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H E+G F+W R LF++T+ +++Y MC+++P ATV +V + K K+ P PL T+E
Sbjct: 274 VTHDHEDGNVVFNWKRNRLFNHTACLVLYHMCMEDPIATVVEVGSKPKSKWRPLPLDTVE 333
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR +++++ TM++AE LY GFISYPRTET+ F NL +VQ Q P+WG
Sbjct: 334 LEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQHQTQDPNWGA 393
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+LD RN G D+AHPPIHPTK+++ + +LYE +VRHFLAC
Sbjct: 394 FAQRILDQGGPTPRN---GTKSDQAHPPIHPTKYTAN---LQGNEQRLYEFIVRHFLACC 447
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +ILA+NYL+VY +E W VIP Y G +F PTT+
Sbjct: 448 SQDAKGQETTVEIDIANERFVAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSRFQPTTV 507
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++G
Sbjct: 508 EMVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHLG 567
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A +
Sbjct: 568 MGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSIVLHQQVQKYKQVFIEAVARAN 627
Query: 610 KLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL +A+ +F + +Q+ A +R+C C ++MVLK ++G + C +P
Sbjct: 628 KLDQALAQYFGEATEIVEQEEVYPAMPVSIRKCPQCN-NDMVLKTKKNGGFYLSCTGYPA 686
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
C+ AVW P V + A + C C P PV+ ++FKF++ +PP ++ +GCIGGCD+ L
Sbjct: 687 CKTAVWFPDFVLDVAKDESICAVCKPHPVHRLKFKFKRGSVPPTMPLDFVGCIGGCDQML 746
Query: 726 RQLIEI 731
++L+++
Sbjct: 747 KELLDL 752
>gi|332261726|ref|XP_003279918.1| PREDICTED: DNA topoisomerase 3-alpha isoform 1 [Nomascus
leucogenys]
Length = 1001
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/752 (46%), Positives = 487/752 (64%), Gaps = 17/752 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P++ +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDRRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+I E F G VILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDITQERFVAHGLVILARNYLDVYPYDHWSDKILPIYERGSCFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 625 KKLDEALAQYFGNRTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCDET
Sbjct: 684 ECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR P+R P+ Q N
Sbjct: 744 LREILDL--RFSRGPSRASQPSGRLQASQSLN 773
>gi|383412619|gb|AFH29523.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/752 (46%), Positives = 487/752 (64%), Gaps = 17/752 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS + +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLSSGR-MRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+ V +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKTVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G VILA+NYLDVY ++ W ++P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 625 KKLDEALAQYFGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+A+WLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCDET
Sbjct: 684 ECRSAMWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR P R P+ Q N
Sbjct: 744 LREILDL--RFSRGPPRAIQPSGHLQASQSLN 773
>gi|355568310|gb|EHH24591.1| DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 1001
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/752 (46%), Positives = 486/752 (64%), Gaps = 17/752 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQSVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+ V +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKTVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F VILA+NYLDVY ++ W ++P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHSLVILARNYLDVYPYDHWSDKILPVYERGSRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 625 KKLDEALAQYFGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+A+WLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCDET
Sbjct: 684 ECRSAMWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR P R P+ Q N
Sbjct: 744 LREILDL--RFSRGPPRAIQPSGHLQASQSLN 773
>gi|397476895|ref|XP_003809826.1| PREDICTED: DNA topoisomerase 3-alpha isoform 1 [Pan paniscus]
Length = 1001
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/752 (46%), Positives = 485/752 (64%), Gaps = 17/752 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H +G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHRDGIVEFNWKRHRLFNHTACLVLYQLCMEDPIATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 625 KKLDEALAQYFGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+T
Sbjct: 684 ECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDT 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR R P+ Q N
Sbjct: 744 LREILDL--RFSRGSPRASQPSGRLQANQSLN 773
>gi|449281375|gb|EMC88455.1| DNA topoisomerase 3-alpha [Columba livia]
Length = 1016
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/755 (46%), Positives = 491/755 (65%), Gaps = 22/755 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK A+ +A +LS N +R REG S++NKIYE++Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAARGIADLLS-NSRMRRREGFSKFNKIYEYDYQMFGQSVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF +RKWHSC+P L+ A + K+ PE+ DIK+TLE E ++CQ LV+W DCDREG
Sbjct: 94 LAHDFKLPFRKWHSCNPLALFDAEIEKYCPENYLDIKRTLEREVQQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVFRARFSEITLHAVRTACENLTQPDQKTSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ D + D ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 214 IGAAFTRFQTLRLRKIFPDILADQ---LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H E+G+ F+W R LF++T+ +++Y++C+++P ATV +V + K K+ P PL T+
Sbjct: 271 KVTHDHEDGSVVFNWKRNRLFNHTACLVLYQICMEDPVATVVEVGSKPKSKWRPLPLDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR +++++ TM++AE LY GFISYPRTET+ F NL +VQ+Q P+WG
Sbjct: 331 ELEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQQQTQDPNWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQR+LD P G D+AHPPIHPTK+++ Q +LYE +VRHFLAC
Sbjct: 391 AFAQRILDQGGP---TPRRGTKSDQAHPPIHPTKYAANLQGSEQ---RLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYL+VY +E W VIP Y G +F PTT
Sbjct: 445 CSQDAKGQETTVEIDIANERFIAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSRFQPTT 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++
Sbjct: 505 VEMVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A +
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSVVLQQQVQKYKQVFIEAVARA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL +A+ +F + +Q+ A VR+C C ++MVLK ++G + C+ +P
Sbjct: 625 NKLDQALAQYFGEAAEIAEQEEVYPAMPVSVRKCPQCN-NDMVLKTRKNGGFYLSCMGYP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
C+ AVW P V + A + C C P PV+ ++FKF++ +PP + +GCIGGCDE
Sbjct: 684 ACKTAVWFPDFVLDVARDESVCAVCKPHPVHRLKFKFKRGSVPPVMPLEFVGCIGGCDEM 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
L++L+++ + R P ++SN QQ+N Q
Sbjct: 744 LKELLDL-----KYLHRSSQPMSASN--QQANRLQ 771
>gi|301612786|ref|XP_002935889.1| PREDICTED: DNA topoisomerase 3-alpha [Xenopus (Silurana)
tropicalis]
Length = 1021
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/758 (45%), Positives = 489/758 (64%), Gaps = 23/758 (3%)
Query: 7 PIN-VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVT 65
P+N VL VAEK AK +A ++S N +R REG S++NKIYE+ Y + G+ ++MTSV+
Sbjct: 37 PVNKVLCVAEKNDAAKGIADLMS-NSRMRRREGFSKFNKIYEYEYHLFGKDVTVVMTSVS 95
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL+ LDF + +KWHSC+P L+ A V+K+ P+D +IK+TLE E R+CQ L++W DCD
Sbjct: 96 GHLLALDFQDHMKKWHSCNPVSLFEAEVQKYCPDDFVNIKRTLEREVRQCQALIIWTDCD 155
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGENI FE+I VC++V +L + RARFS + R I A ++LV P+Q +DAVD R E+
Sbjct: 156 REGENIGFEIIHVCKSVKPNLQVFRARFSEITPRSIRMACEHLVQPDQNISDAVDVRMEL 215
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTRFQT+ L+ ++ N ++SYG CQFPTLGFVVER+ IQA E F
Sbjct: 216 DLRIGAAFTRFQTLRLQKMFPSVLS---NQLISYGSCQFPTLGFVVERFKAIQAFIPETF 272
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
+ I +H+ E+G FSW R LF++T+ +++Y++C+++P ATV +V + K K+ P L
Sbjct: 273 YKIKVTHEHEDGLVEFSWKRNRLFNHTACLVLYQICMEDPMATVMEVGSKPKSKWRPVAL 332
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+ELEK ASR ++ ++ TMKVAE LY GFISYPRTET+ F NL +V++Q
Sbjct: 333 DTVELEKLASRKLKIGAKETMKVAEKLYTQGFISYPRTETNIFPKDLNLTSLVEQQTHDH 392
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +AQR+L+ RN G D+AHPPIHPTK+++ + ++YE +VRHF
Sbjct: 393 QWGGFAQRILERGGPTPRN---GNKTDQAHPPIHPTKYTNS---LQGNEQRIYEFIVRHF 446
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC SQ A G ET VEI+IA E F G +I+A+NYLDVY ++ W +IP Y G +F
Sbjct: 447 LACCSQDAQGQETTVEIDIAAERFVAHGLMIIARNYLDVYPYDKWNTKIIPVYEMGARFQ 506
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
P+T+ + G T PP LL+EADL+S M+K GIGTDAT +HI+ + R Y RF P
Sbjct: 507 PSTVEMVDGETSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTPEQRFLP 566
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+G LV GYD MG+E+ KP+LR+ +ESD+K + G K K VL +Q+ K F++A
Sbjct: 567 GELGMGLVEGYDSMGFEMSKPDLRAELESDLKLICEGKKDKFSVLRLQVQKYKQVFVEAA 626
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQA----AGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
K KL EA+ +F + + Q+ VR+C C + +MVLK RDG + C+
Sbjct: 627 AKATKLDEALSQYFGQAAQPVPQEEIYADTPLPVRKCPQCNK-DMVLKTKRDGGFFLSCV 685
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
+P C+++VW P V E + + C +C P PVY ++ KF++ +PP + +GCIGGC
Sbjct: 686 GYPGCKSSVWFPSFVLEVSRDESICGTCKPHPVYKLKMKFKRGSVPPLMPLEFVGCIGGC 745
Query: 722 DETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
DETLR+++++ + R P A+ ++SNH Q
Sbjct: 746 DETLREILDL----KYLHGGNRAPQAAP---RESNHLQ 776
>gi|326929014|ref|XP_003210667.1| PREDICTED: DNA topoisomerase 3-alpha-like [Meleagris gallopavo]
Length = 1020
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/726 (46%), Positives = 478/726 (65%), Gaps = 15/726 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK A+ +A +LS N +R REG S++NKIYE++Y + GQ M+MTSV+GHL+
Sbjct: 38 VLCVAEKNDAARGIADLLS-NSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSGHLL 96
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF +RKWHSC+P L+ A + K+ PE+ DIK+TLE E ++CQ LV+W DCDREGE
Sbjct: 97 AHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDREGE 156
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC+AV +L + RARFS + + +A +NL P+Q +DAV+ RQE+DLRI
Sbjct: 157 NIGFEIIHVCKAVKPNLQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQELDLRI 216
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ D + D ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 217 GAAFTRFQTLRLQKIFPDILADQ---LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIK 273
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H E+G F+W R LF++T+ +++Y MC+++P ATV +V + K K+ P PL T+E
Sbjct: 274 VTHDHEDGNVVFNWKRNRLFNHTACLVLYHMCMEDPVATVVEVGSKPKSKWRPLPLDTVE 333
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR +++++ TM++AE LY GFISYPRTET+ F NL +VQ Q P+WG
Sbjct: 334 LEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQHQTQDPNWGA 393
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+LD RN G D+AHPPIHPTK+++ + +LYE +VRHFLAC
Sbjct: 394 FAQRILDQGGPTPRN---GTKSDQAHPPIHPTKYTAN---LQGNEQRLYEFIVRHFLACC 447
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +ILA+NYL+VY +E W VIP Y G +F PTT+
Sbjct: 448 SQDAKGQETTVEIDIANERFIAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSRFQPTTV 507
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++G
Sbjct: 508 EMVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHLG 567
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A +
Sbjct: 568 MGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSIVLQQQVQKYKQVFIEAVARAN 627
Query: 610 KLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL +A+ +F + +Q+ A +R+C C ++MVLK ++G + C+ +P
Sbjct: 628 KLDQALAQYFGEGTEIAEQEEVYPAMPVSIRKCPQCN-NDMVLKTKKNGGFYLSCMGYPA 686
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
C+ AVW P V + A + C C P PV+ ++FKF++ +PP + +GCIGGCD+ L
Sbjct: 687 CKTAVWFPDFVLDVAKDESICAVCKPHPVHRLKFKFKRGSVPPTMPLEFVGCIGGCDQML 746
Query: 726 RQLIEI 731
++L+++
Sbjct: 747 KELLDL 752
>gi|147906574|ref|NP_001085699.1| topoisomerase (DNA) III alpha [Xenopus laevis]
gi|49115195|gb|AAH73221.1| MGC80537 protein [Xenopus laevis]
Length = 1022
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/754 (45%), Positives = 487/754 (64%), Gaps = 22/754 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A ++S N +R REG S++NKIYE+ Y + G+ ++MTSV+GHL+
Sbjct: 41 VLCVAEKNDAAKGIADLMS-NSRMRRREGFSKFNKIYEYEYHLFGKDVTVVMTSVSGHLL 99
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L+F + +KWHSC+P L+ A V+K+ P+D +IK+TLE E R+CQ L++W DCDREGE
Sbjct: 100 ALEFMDHMKKWHSCNPVSLFEAEVQKYCPDDFVNIKRTLEREVRQCQALIIWTDCDREGE 159
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC++V +L + RARFS + R I A ++LV P+Q DAVD R E+DLRI
Sbjct: 160 NIGFEIIHVCKSVKPNLQVFRARFSEITPRSIRMACEHLVQPDQNINDAVDVRTELDLRI 219
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ ++ N ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 220 GAAFTRFQTLRLQKIFPSVLS---NQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIK 276
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H+ E+G FSW R LF++T+ +++Y++C+++P ATV +V + K K+ P L T+E
Sbjct: 277 VTHEHEDGLVEFSWKRNRLFNHTACLVLYQICMEDPMATVMEVGSKPKSKWRPVALDTVE 336
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR ++ ++ TMK AE LY GFISYPRTET+ F NL +V++Q P WG
Sbjct: 337 LEKLASRKLKIGAKETMKTAEKLYTQGFISYPRTETNIFPKDLNLTSLVEQQTHDPQWGG 396
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+L+ RN G D+AHPPIHPTK+++ + ++YE +VRHFLAC
Sbjct: 397 FAQRILERGGPTPRN---GNKTDQAHPPIHPTKYTNN---LQGNEQRIYEFIVRHFLACC 450
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +I+A+NYLDVY ++ W +IP Y G QF PTT+
Sbjct: 451 SQDAQGQETTVEIDIAAERFVAHGLMIIARNYLDVYPYDKWNTKIIPVYEMGAQFQPTTV 510
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y RF P +G
Sbjct: 511 EMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKSRSYVGLTPEQRFLPGELG 570
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MG+++ KP+LR+ +ESD+K + G K K VL +Q+ K F++A K
Sbjct: 571 MGLVEGYDSMGFQMSKPDLRAELESDLKLICEGKKDKFTVLRLQIQKYKQVFVEAAAKAT 630
Query: 610 KLLEAMGIFFERWSGGEDQQAA-GEV---VRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ +F + + QQ E VR+C C +MVLK RDG + C+ +P
Sbjct: 631 KLDEALSQYFGQAAEAVPQQEIYAETPLPVRKCPQCNR-DMVLKTKRDGGFFLSCVGYPS 689
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
C+++VW P SV E + + C++C P PV+ ++ KF++ IPP + +GCIGGCDETL
Sbjct: 690 CKSSVWFPSSVLEVSRDESICSTCRPHPVHKLKLKFKRGSIPPLMPLEFVGCIGGCDETL 749
Query: 726 RQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
R+++++ + R P A+ ++SNH Q
Sbjct: 750 REILDL----KYLHGGNRPPQAAP---RESNHLQ 776
>gi|224070273|ref|XP_002189800.1| PREDICTED: DNA topoisomerase 3-alpha [Taeniopygia guttata]
Length = 1009
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/727 (46%), Positives = 475/727 (65%), Gaps = 15/727 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK A+ +A +LS N +R REG S++NKIYE++Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAARGIAELLS-NSRMRRREGFSKFNKIYEYDYHMFGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF +RKWHSC+P L+ A + K+ PE+ DIK+TLE E ++CQ LV+W DCDREG
Sbjct: 94 LAHDFVMPFRKWHSCNPLALFDAEIEKYCPENYLDIKRTLEREIQQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VCRAV +L + RARFS + + A ++L P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCRAVKPNLQVFRARFSEITPHAVRAACEHLTQPDQKTSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ D + D ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 214 IGAAFTRFQTLRLRKIFPDILADQ---LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H E+G+ F+W R LF++T+ +++Y+MC+++P ATV V + K K+ P PL T+
Sbjct: 271 KVTHDHEDGSVVFNWKRNRLFNHTACLVLYQMCMEDPVATVVDVVSKPKSKWRPLPLDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR +++++ TM +AE LY GFISYPRTET+ F NL +V++Q P+WG
Sbjct: 331 ELEKLASRKLKINAKETMTIAEKLYTKGFISYPRTETNIFPKELNLSALVEQQTQDPNWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQR+LD P SG D+AHPPIHPTK++S + +LYE +VRHFLAC
Sbjct: 391 GFAQRILDQGGP---TPRSGTKSDQAHPPIHPTKYTSN---LQGNEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYL+VY ++ W VIP Y G +F PTT
Sbjct: 445 CSQDAKGQETTVEIDIANEQFIAQGLMILARNYLEVYPYDKWSDKVIPLYHKGSRFQPTT 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P +
Sbjct: 505 VEMVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGQL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A +
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSVVLQQQVQKYKQVFIEAVARA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL +A+ + + +Q A VR+C C S+MVLK ++G + C+ +P
Sbjct: 625 NKLDQALAQYLGEAAEIPEQDEVYPATPVSVRKCPQCN-SDMVLKTRKNGGFYLSCMGYP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
C+ AVW P V + + C+ C P PV+ ++FKF++ +PP + +GCIGGCDE
Sbjct: 684 ACKTAVWFPDFVVDVTRDESICDVCKPHPVHRLKFKFKKGSVPPVMPLEFVGCIGGCDEM 743
Query: 725 LRQLIEI 731
L++L+++
Sbjct: 744 LKELLDL 750
>gi|402898997|ref|XP_003912493.1| PREDICTED: DNA topoisomerase 3-alpha [Papio anubis]
Length = 998
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/749 (46%), Positives = 481/749 (64%), Gaps = 14/749 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+ V +L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKTVKPNLQVLRARFSEITPRAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G VILA+NYLDVY ++ W ++P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK- 607
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
K G E E A E +R+C C + +MVLK ++G + C+ FP+CR
Sbjct: 625 KXXXXXXXGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECR 683
Query: 668 NAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQ 727
+A+WLP SV EA ++ C C P PVY ++ KF++ +PP + + CIGGCDETLR+
Sbjct: 684 SAMWLPDSVLEAIRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDETLRE 743
Query: 728 LIEICGTGSRIPARGRGPTASSNNGQQSN 756
++++ SR P R P+ Q N
Sbjct: 744 ILDL--RFSRGPPRAIQPSGHLQASQSLN 770
>gi|302832397|ref|XP_002947763.1| hypothetical protein VOLCADRAFT_79791 [Volvox carteri f.
nagariensis]
gi|300267111|gb|EFJ51296.1| hypothetical protein VOLCADRAFT_79791 [Volvox carteri f.
nagariensis]
Length = 936
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/735 (49%), Positives = 472/735 (64%), Gaps = 31/735 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS-IRGQPCHMLMTSVTG 66
I VLNVAEKPSVAK V+ ILS N R G +R+N I+EFNYS + G P M+ TSV G
Sbjct: 3 IRVLNVAEKPSVAKEVSRILS-NGSARSSRGPARFNPIWEFNYSNVEGHPAVMVFTSVAG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HLME++F + YRKWH C DLY PV K VP+D+ D+K+ LE+ +R+CQWLVLWLDCDR
Sbjct: 62 HLMEVEFPDGYRKWHGCSDVDLYSCPVDKRVPQDRTDLKRQLEQLSRQCQWLVLWLDCDR 121
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI+FEV+ VCRA N LV+RRARFSALI RE+ +A+ L PN A AVDARQEID
Sbjct: 122 EGENISFEVMAVCRAANPRLVIRRARFSALIPRELQRAMATLGQPNANDAAAVDARQEID 181
Query: 187 LRIGASFTRFQTMLLKN-FHIDSVT--------DDRNLVLSYGPCQFPTLGFVVERYWEI 237
LRIGASFTRFQT L++ F + + D R VLSYGPCQFPTLG +V+R WE+
Sbjct: 182 LRIGASFTRFQTKQLRDRFDLSGIAAVRERIQQDGRAPVLSYGPCQFPTLGIIVQRAWEV 241
Query: 238 QAHESEEFWTINCSHKSEE----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVR 293
Q H E+FWTI+ +++ G+ F W RG LFD A + YE+C + TA V VR
Sbjct: 242 QNHVREQFWTIHVAYREAPTAGGGSCVFEWARGRLFDEAVAEMYYEICEEAGTAVVVSVR 301
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+ + P PLST+E++KRA+ RMS E MK+AE+LYQAGFISYPRTETD F G +
Sbjct: 302 GTTRTRQAPAPLSTLEMQKRATAKLRMSGERIMKLAEELYQAGFISYPRTETDVFDPGMD 361
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQD 413
L GIV E G P WG +AQR+L + LWR P GGHDDKAHPPIHPT+ S GE WS D
Sbjct: 362 LQGIVTEHTGDPRWGRHAQRIL--SGELWRQPRPGGHDDKAHPPIHPTRHSLGEHDWSHD 419
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL 473
+LYE VVRHFLAC S+ AVG+ET VEI+I GE F T+G ++L +N+LDVY + WGG
Sbjct: 420 KRQLYEFVVRHFLACCSKDAVGSETQVEIDIGGERFRTTGLMVLERNWLDVYPYSGWGGN 479
Query: 474 -VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+P GQ F+P+ + L +G T PPP LSE DL++ M+ GIGTDAT+ +HI+K L+R
Sbjct: 480 DNLPKLTVGQSFVPSEMRLRTGSTEPPPRLSERDLIAKMEAYGIGTDATVAEHIQKQLER 539
Query: 533 FYAIKDANT-RFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVL 590
YA KD F PT +GEAL+ GY MG +LWKP+LR +E+ +++V+ G SK VL
Sbjct: 540 GYAEKDEGALTFWPTPLGEALISGYCRMGLDDLWKPDLRGKIEASIRDVAAGRVSKDQVL 599
Query: 591 ANCLQQMKACFLDARLKKVKLLEAMGIFF-------ERWSGGEDQQAAGEVVRQCGICQE 643
+Q +A FL A+ + L M F GG G ++ C C
Sbjct: 600 QEAIQFFRADFLTAQQRAGMLAAEMARFLPTAGGGGGGGGGGGGPPPVGPLLGTCQSCGG 659
Query: 644 SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCT----PGPVYLIQF 699
S++VL + +G + C + C + LP +V++A+V++ C C GP+
Sbjct: 660 SSLVLTRGSEGRYVAVCSSTSVCGYRLALPRAVADASVSSQPCGRCALSGGGGPLMRADL 719
Query: 700 KFRQHEIPPGFNVNH 714
+FR ++PPG H
Sbjct: 720 RFRMGQMPPGILQVH 734
>gi|345305221|ref|XP_001510142.2| PREDICTED: DNA topoisomerase 3-alpha [Ornithorhynchus anatinus]
Length = 994
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/701 (47%), Positives = 463/701 (66%), Gaps = 14/701 (1%)
Query: 35 IREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVR 94
+REG SR+NKIYEF+Y + GQ M+MTSV+GHL+ DF ++RKW SC+P L+ A +
Sbjct: 55 MREGFSRFNKIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLILFEAEIE 114
Query: 95 KHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFS 154
K+ PE+ DIK+TLE EA++CQ L++W DCDREGENI FEVI VC+AV L + RARFS
Sbjct: 115 KYCPENFVDIKRTLEREAQQCQTLMIWTDCDREGENIGFEVIHVCKAVKPSLQVFRARFS 174
Query: 155 ALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRN 214
+ R + A + L +P+Q +DAVD RQE+DLRIGA+FTRFQT+ L+ + + +
Sbjct: 175 EITPRAVQLACETLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQ-- 232
Query: 215 LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSA 274
++SYG CQFPTLGFVVER+ IQA E F I +H+ E+ F+W R LF++T+
Sbjct: 233 -LISYGSCQFPTLGFVVERFKAIQAFVPESFHKIKVTHEHEDCLVEFNWKRHRLFNHTAC 291
Query: 275 VIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ 334
+++Y+MC++EPTATV +V + K K+ P PL T+ELEK ASR +++++ TM++AE LY
Sbjct: 292 LVLYQMCIEEPTATVVEVGSKPKSKWRPQPLDTVELEKLASRKLKINAKETMRIAEKLYT 351
Query: 335 AGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA 394
G+ISYPRTET+ F NL +VQ+Q WG +AQR+LD RN G D+A
Sbjct: 352 HGYISYPRTETNIFPKDLNLVALVQQQTQDQHWGDFAQRILDRGGPTPRN---GNKSDQA 408
Query: 395 HPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGR 454
HPPIHPTK++ D +LYE +VRHFLAC SQ A G ET VEI+IA E F G
Sbjct: 409 HPPIHPTKYTCN---LQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAHERFVAHGL 465
Query: 455 VILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+ILA+NYL+VY ++ W VIP Y G +F PTT+ + G T PP LL+EADL+S M+K
Sbjct: 466 MILARNYLEVYPYDRWSDKVIPIYEKGFRFQPTTVEMVEGETSPPQLLTEADLISLMEKH 525
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
GIGTDAT +HI+ + R Y A+ RF P ++G LV GYD MGYE+ KPNLR+ +E+
Sbjct: 526 GIGTDATHAEHIETIKSRMYVGLTADKRFLPGHLGMGLVEGYDAMGYEMSKPNLRAELEA 585
Query: 575 DMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ----A 630
D+K + G K K VL +Q+ + F++A K KL EA+ +F + Q+ A
Sbjct: 586 DLKLICEGKKDKFVVLTQQVQKYRQVFIEAAAKANKLDEALSQYFGEAAEVSQQEEIYPA 645
Query: 631 AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCT 690
+R+C C + +MVLK ++G +GCL +P C+ AVW P SV E + + C C
Sbjct: 646 MPVPIRKCPQCNK-DMVLKTKKNGGFYLGCLGYPACKAAVWFPDSVLEVSKDDSVCPDCV 704
Query: 691 PGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEI 731
P PVY ++FKF++ IPP + +GCIGGCDETLR+++++
Sbjct: 705 PHPVYKLKFKFKRGSIPPTMPLEFVGCIGGCDETLREILDL 745
>gi|443692088|gb|ELT93762.1| hypothetical protein CAPTEDRAFT_193082 [Capitella teleta]
Length = 934
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/786 (44%), Positives = 491/786 (62%), Gaps = 29/786 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LNVAEK AK++AG++S + R REG S++NKIYEF+Y++ Q C M MTSV+GH
Sbjct: 2 VRILNVAEKNDAAKTLAGLMSGGRS-RKREGFSKFNKIYEFDYNLFNQNCTMSMTSVSGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ +F+ +RKWHSC+P L+ AP+ K PE+ KDIK+TLE EAR C+ LV+W DCDRE
Sbjct: 61 LLGCEFEASHRKWHSCNPVSLFDAPIHKTCPENYKDIKRTLEREARGCEILVVWTDCDRE 120
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI FEVI+VC AV ++ + RARFS + + +A+ NL P++ +DAVD RQE+DL
Sbjct: 121 GENIGFEVIQVCTAVKPNMRVYRARFSEMTPGAVTRAIANLQPPDKNVSDAVDVRQELDL 180
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGASFTRFQTM L+ + + D ++SYG CQFPTLGFVVERY ++QA E FW
Sbjct: 181 RIGASFTRFQTMRLQKVFPNVLADQ---LISYGSCQFPTLGFVVERYKQVQAFIPEPFWK 237
Query: 248 INCSHK-SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I SH ++G FSW RG LFDY + +++YE ++ P ATV +V+++ K K+ P L
Sbjct: 238 IKVSHDLQDDGFIEFSWRRGRLFDYEACLVLYEHVIENPLATVLEVKKKPKSKWRPVALD 297
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+ELEK ASR R++++ TMK+AE LY GFISYPRTET+ F NL ++Q+Q+ D
Sbjct: 298 TVELEKLASRKLRINAKETMKIAEKLYTQGFISYPRTETNIFPKDLNLRNLIQQQVNDQD 357
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +A +L+ NP +G D+AHPPIHPTK+++G + ++YE VVRHFL
Sbjct: 358 WGEFAGHILEDGP----NPRNGNKTDQAHPPIHPTKYTNG---LQGNEKRVYEFVVRHFL 410
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC S+ A G ET V+I+I E FS SG +I+A+NYLDVY ++ W G ++PT G QF P
Sbjct: 411 ACCSKDAQGQETTVDISINDEYFSASGLMIIARNYLDVYPYDKWTGKILPTMEEGAQFTP 470
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T+ ++ G T P LL+EADL+S MDK GIGTDAT +HI+ + R Y + +F P
Sbjct: 471 RTIEMNQGETSAPSLLTEADLISLMDKHGIGTDATHAEHIETIKARLYVGLTNDQKFIPG 530
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LV GYD MG+ + KP+LR+ +E+D+K + G K++ VLA+ +++ K F++A
Sbjct: 531 ELGMGLVEGYDAMGFHMSKPHLRAELENDLKLICEGKKNRDVVLADQIRKYKEVFVEACT 590
Query: 607 KKVKLLEAMGIFF---ERWSGGEDQQAAGE--VVRQCGICQESNMVLKKSRDGNLMVGCL 661
+ K+ A+ F ++ S + QA V+ C C + K + +GC
Sbjct: 591 QAEKIDTALAEHFGAPQQLSNQDLLQATAMAITVKPCSKCGMQMSLRTKKDNKGFFIGCS 650
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
+P CR +WLP V +A VT C C PGPV I+F+F++ +PP ++ GCIGGC
Sbjct: 651 GYPTCREVIWLPDYVLKAEVTEEVCPHCQPGPVNRIRFQFKRGSVPPFIPNDYTGCIGGC 710
Query: 722 DETLRQLIEI-----------CGTGSRIPARGRGPTASSNNG-QQSNHRQRACIYCQQMG 769
D L + ++I T S+ PA + P S Q+ +R C +
Sbjct: 711 DNNLMETLQIRRSSQSAAQPSQPTSSQRPAASQRPAPSQRPALSQAPPSRRPFYACSKSQ 770
Query: 770 HSSSDC 775
SS C
Sbjct: 771 DDSSKC 776
>gi|292611936|ref|XP_688695.4| PREDICTED: DNA topoisomerase 3-alpha [Danio rerio]
Length = 998
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/755 (46%), Positives = 487/755 (64%), Gaps = 17/755 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A I+S + R REG S YNKIYE+ Y++ GQ + MTSV+GHL+
Sbjct: 33 VLCVAEKNDAAKGIAEIMSNGRSRR-REGCSVYNKIYEYEYNLFGQNVTVNMTSVSGHLL 91
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L+F ++KWHSC P L+ A V K+ PE+ IK+TLE E R+CQ L++W DCDREGE
Sbjct: 92 ALEFKAPFQKWHSCSPVLLFDAEVEKYCPENFIPIKRTLEREVRQCQALIVWTDCDREGE 151
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I+VC+AV ++ + RARFS + I +A + L +P+ +DAVD RQE+DLRI
Sbjct: 152 NIGFEIIDVCKAVKPNIQVFRARFSEITPNSIRRACETLTEPDINVSDAVDVRQELDLRI 211
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GASFTRFQT+ L+ +S++D ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 212 GASFTRFQTLRLQKIFPESLSDQ---LISYGSCQFPTLGFVVERFKAIQAFIPETFFKIK 268
Query: 250 CSHK-SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
H+ +EE + F+W R LF++T+ +++Y+MC++EP A V V + K K+ P PL T+
Sbjct: 269 VVHEPNEEESVEFNWKRHRLFNHTACLVLYQMCMEEPMAKVISVTSKPKSKWRPLPLDTV 328
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R+S++ TMK+AE LY GFISYPRTET+ F NL +V++Q +WG
Sbjct: 329 ELEKLASRKLRISAKETMKIAEKLYTQGFISYPRTETNMFPQNLNLTRLVEQQTQDQEWG 388
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQR+L+ RN G D+AHPPIHPTK+++G + +LYE +VRHFLAC
Sbjct: 389 NFAQRILESGGPTPRN---GNKSDQAHPPIHPTKYTNG---LQGNEKRLYEFIVRHFLAC 442
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
S+ A G E VEI+IA E FS SG I+A+NYL+VY ++ W VIP+Y F PT
Sbjct: 443 CSKDAQGQEVTVEIDIAEERFSASGLTIIARNYLEVYPYDKWYNKVIPSYSPNTTFQPTA 502
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL+S M+K GIGTDAT +HI+ + R Y A+ RF P +
Sbjct: 503 IEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGEL 562
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GY+ MGYE+ KP+LR+ +E+D+K VS G K+KA VL+ + + KA F+++ K
Sbjct: 563 GMGLVEGYNSMGYEMSKPDLRAELEADLKLVSEGRKNKASVLSYHVAKYKAVFIESVRKA 622
Query: 609 VKLLEAMGIFF-ERWSGGEDQQAAGEV---VRQCGICQESNMVLKKSRDGN-LMVGCLAF 663
KL EA+ + E +Q E+ VR+C C +MVLKK +D +++ CL +
Sbjct: 623 KKLDEALSNYLGPAQEIAEQEQVELEIPLPVRKCPQCNR-DMVLKKKKDSTGMLLSCLGY 681
Query: 664 PQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDE 723
P C+ AVW P +V E + + C +C P PV++++FKF++ +PP + +GCIGGCD+
Sbjct: 682 PACKAAVWFPDTVLEVSRDESICPTCRPHPVHMLKFKFKRGSLPPMMPLEFVGCIGGCDD 741
Query: 724 TLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHR 758
TLR+++ + R SS + Q HR
Sbjct: 742 TLREVLNLKYLRGRDAESAPQANNSSRSSQHHIHR 776
>gi|291224920|ref|XP_002732450.1| PREDICTED: MGC80537 protein-like [Saccoglossus kowalevskii]
Length = 916
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/732 (45%), Positives = 473/732 (64%), Gaps = 17/732 (2%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GR VLNVAEK AKS+A ++S+ R REG S YNKIYE++++I + C M MTS
Sbjct: 2 AGRVTRVLNVAEKNDAAKSLADVMSRGHYNR-REGFSVYNKIYEWDFNILNRNCKMTMTS 60
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V+GHL +F Y+KW CDPA L+ APV K + +D +DIK+TLE EAR+C+ L++W D
Sbjct: 61 VSGHLSNYEFIGVYQKWLGCDPAMLFDAPVEK-LCKDFQDIKRTLEREARQCKILIIWTD 119
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
DREGENI +E+I++C VN L + RARFS + R I + NL+ P++ +DAVD RQ
Sbjct: 120 GDREGENIGYEIIDICTNVNARLDVYRARFSEITPRSITRTCDNLIRPDKRTSDAVDVRQ 179
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIGA+FTRFQT+ LK + D ++S+G CQFPTLGFVVERY ++++ E
Sbjct: 180 ELDLRIGAAFTRFQTLRLKKVFPQVLADS---LISFGSCQFPTLGFVVERYKQVKSFIPE 236
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
F+ I +H +++G F W R LFD+T+ ++ Y++C++ P A V V+ + K K+ P
Sbjct: 237 TFYRIKVTHATDDGNVDFHWKRHRLFDHTACLVFYQLCMENPLAKVINVQSRNKSKWRPT 296
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P+ T+E+EK ASR +++++ TMK+AE LY GFISYPRTET+ F +L +V+ Q+
Sbjct: 297 PMDTVEMEKLASRKLKITAKETMKIAEKLYTKGFISYPRTETNIFPKELDLRPLVENQVQ 356
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
P+WG +A +L H NP G D AHPPIHPTK+ + + + ++YEL+VR
Sbjct: 357 DPNWGAFAAGVLQHGP----NPRQGKKTDNAHPPIHPTKYGNN---FDGNEKRVYELIVR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HFLAC+SQ A G ET VEI+IA E+F+ G +I+A+NYLDVY ++ W +IP + G++
Sbjct: 410 HFLACLSQDAQGHETTVEIDIAAEIFTAQGLMIIARNYLDVYPYDKWNAKIIPRFQQGEE 469
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
F PT + + G T PPLL+EADL+S M+K GIGTDAT DHI + R Y RF
Sbjct: 470 FQPTAIEMVDGETTAPPLLTEADLISLMEKHGIGTDATHADHIDTVKSRNYVGLTDEGRF 529
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
P +G LV GY++MGYEL KPNLR+ +E+D+ + G K + DVL +++ K F++
Sbjct: 530 VPGELGIGLVDGYNNMGYELSKPNLRAELEADLVAICEGRKDRDDVLRIQVEKYKQVFIE 589
Query: 604 ARLKKVKLLEAMGIFF---ERWSGGE-DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
A K KL EA+ +F + ++ E VR+C C MV+K +DG M+
Sbjct: 590 AVEKASKLDEALSEYFGEAQHYTTTEITHNFMSNPVRKCPRCNNP-MVIKTKKDGGYMMS 648
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C +P C+ AVW P V +A + +TC C PGP+ I+FKF++ +PPGF + ++GCIG
Sbjct: 649 CTGYPNCKAAVWFPACVEKATLDNSTCTQCCPGPIQKIKFKFKRGSVPPGFPLEYVGCIG 708
Query: 720 GCDETLRQLIEI 731
GCD TL + ++
Sbjct: 709 GCDRTLTEELDF 720
>gi|426237677|ref|XP_004012784.1| PREDICTED: DNA topoisomerase 3-alpha [Ovis aries]
Length = 1002
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/726 (46%), Positives = 463/726 (63%), Gaps = 14/726 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK AK +A +LS + +R REG SR+NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KILCVAEKNDAAKGIADLLSGGR-MRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE EAR+CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREARQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FEVI VC+AV L + RARFS + R + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEVIHVCKAVKPSLQVLRARFSEITARAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IG H + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGEEGAVRVGGQGSGAHPAVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H +G FSW R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 RVTHDHRDGVVEFSWKRHRLFNHTACLVLYQLCMEDPRATVVEVRSKAKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F +L +V++QI P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQIPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+A+ +L+ RN G D+AHPPIHPTK++ D +LYEL+VRHFLAC
Sbjct: 391 AFARNILERGGPTPRN---GNKSDQAHPPIHPTKYTDS---LQGDEQRLYELIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+I E F G +ILA+NYLDVY ++ W +P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIVQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYKEGTYFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKLVVLHQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ +F + Q+ A E +R+C C +MVLK + G + C FP+
Sbjct: 625 RKLDEALSQYFGAAAEVAPQEALPAVSEPIRKCPQCGR-DMVLKTRKSGGFYLSCTGFPE 683
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR+AVW P SV EA+ + C C P P+Y ++FKF++ +PP + +GCIGGCDETL
Sbjct: 684 CRSAVWFPDSVLEASRDASVCPVCQPRPIYRLKFKFKRGSLPPTMPLEFVGCIGGCDETL 743
Query: 726 RQLIEI 731
R+++ +
Sbjct: 744 REILAL 749
>gi|334332664|ref|XP_003341626.1| PREDICTED: DNA topoisomerase 3-alpha [Monodelphis domestica]
Length = 976
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/784 (44%), Positives = 489/784 (62%), Gaps = 37/784 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A +LS ++ +R +EG S N + M+MTSV+GHL+
Sbjct: 39 VLCVAEKNDAAKGIADLLSGSR-MRRKEGLS-------VNVT-------MVMTSVSGHLL 83
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF +RKW SC+P L+ A + K+ PE+ DIK+TLE+E ++CQ LV+W DCDREGE
Sbjct: 84 AHDFQMPFRKWQSCNPLVLFEAQIEKYCPENFVDIKRTLEKEVQQCQSLVIWTDCDREGE 143
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC+AV +L + RARFS + + + A Q+L +P+Q +DAVD RQE+DLRI
Sbjct: 144 NIGFEIIHVCKAVKPNLRVFRARFSEITEHAVKTACQHLTEPDQRVSDAVDVRQELDLRI 203
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 204 GAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPETFHKIK 260
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H+ E+G FSW R LF++T+ +++Y+MC+++P ATV +V + K ++ P PL T+E
Sbjct: 261 VTHEHEDGLVDFSWKRHRLFNHTACLVLYQMCMEDPVATVVEVGSKPKSRWRPQPLDTVE 320
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR +++++ TMK+AE LY G+ISYPRTET+ F NL +VQ+QI WG
Sbjct: 321 LEKLASRKLKINAKETMKIAEKLYTQGYISYPRTETNIFPKDLNLTALVQQQIHDQQWGA 380
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+LD RN G D+AHPPIHPTK++ + +LYE +VRHFLAC
Sbjct: 381 FAQRILDRGGPTPRN---GKKSDQAHPPIHPTKYTCN---LQGNEQRLYEFIVRHFLACC 434
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
S+ A G ET VEI+IA E F G +ILAKNYL+VY ++ W +IP Y G +F PTT+
Sbjct: 435 SEDAQGQETTVEIDIAQERFVAHGLMILAKNYLEVYLYDRWSDKIIPVYEKGSRFQPTTV 494
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G
Sbjct: 495 EMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKSRMYVGLTPDKRFLPGHLG 554
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A
Sbjct: 555 MGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKHVVLRQQIQKYKQVFIEAVAHAN 614
Query: 610 KLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ +F + Q+ A E +R+C C +MVLK+ ++G + C+ +P
Sbjct: 615 KLDEALSQYFGEMATAVRQEEIYPAMPETIRKCPQCHR-DMVLKRRKNGGFYLSCVGYPD 673
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR AVW P V EA+ + C C P PVY ++ KF++ IPP + +GC+GGCDE+L
Sbjct: 674 CRKAVWFPDFVLEASKDGSVCPVCKPHPVYRLKLKFKRGSIPPAMPLELVGCVGGCDESL 733
Query: 726 RQLIEICGTG--SRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSR 783
Q++++ + SR P G PT Q N A Q GHS + P+ +G+R
Sbjct: 734 VQILDLRHSSGPSRAPQPGGRPTHHLQTNQSLNRMGHA-----QGGHSVTP-PNLSAGTR 787
Query: 784 NARA 787
+A
Sbjct: 788 APQA 791
>gi|426349252|ref|XP_004042226.1| PREDICTED: DNA topoisomerase 3-alpha [Gorilla gorilla gorilla]
Length = 976
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/752 (44%), Positives = 471/752 (62%), Gaps = 42/752 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C++
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCME------------------------- 305
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 306 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 365
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 366 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 419
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 420 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPST 479
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 480 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 539
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 540 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 599
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 600 KKLDEALAQYFGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 658
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+T
Sbjct: 659 ECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDT 718
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR P R P+ Q N
Sbjct: 719 LREILDL--RFSRGPPRASQPSGRLQANQSLN 748
>gi|297272081|ref|XP_001095437.2| PREDICTED: DNA topoisomerase 3-alpha [Macaca mulatta]
Length = 976
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/752 (44%), Positives = 471/752 (62%), Gaps = 42/752 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS + +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLSSGR-MRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+ V +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKTVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C++
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCME------------------------- 305
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 306 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 365
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 366 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 419
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G VILA+NYLDVY ++ W ++P Y G +F P+T
Sbjct: 420 CSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPST 479
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 480 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 539
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 540 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 599
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 600 KKLDEALAQYFGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 658
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+A+WLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCDET
Sbjct: 659 ECRSAMWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDET 718
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR P R P+ Q N
Sbjct: 719 LREILDL--RFSRGPPRAIQPSGHLQASQSLN 748
>gi|395836299|ref|XP_003791095.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha [Otolemur
garnettii]
Length = 1008
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/749 (45%), Positives = 472/749 (63%), Gaps = 23/749 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS + +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLSSGR-MRRREGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAKIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VCRAV L + RARFS + R + A +NL +P++ + AVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCRAVKPSLQVLRARFSEITPRAVRMACENLTEPDERVSSAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEAFHRI 270
Query: 249 NCSHK-SEEGTATFSWMRGHLFD-----YTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ +++G+ ++ R L+ T + +Y +P ATV +VR + K K+ P
Sbjct: 271 KVAAPYTKDGSVAWNGERCSLWQGXDDAPTGSCFLYFPDSXDPMATVVEVRSKPKSKWRP 330
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L T+ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q
Sbjct: 331 QALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTALVEQQT 390
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
P WG +AQ +L+ RN G D+AHPPIHPTK++S D +LYE +V
Sbjct: 391 QDPHWGAFAQSILERGGPTPRN---GSKSDQAHPPIHPTKYTSS---LQGDEQRLYEFIV 444
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLAC SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G
Sbjct: 445 RHFLACCSQDAQGQETSVEIDIARERFVAQGLMILARNYLDVYPYDRWSDKILPVYEQGS 504
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+F P+T+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + R
Sbjct: 505 RFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKR 564
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
F P ++G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F+
Sbjct: 565 FLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFVVLRQQVQKYKQVFI 624
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMV 658
+A K KL EA+ +F + Q+ E VR+C C + +MVLK + G +
Sbjct: 625 EAVAKAKKLDEALAQYFGEGAEVAQQEEIYPTMPEPVRKCPQCNK-DMVLKTKKSGGFYL 683
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCI 718
C+ FP+CR A+W P SV E + + C C P PVY ++FKF++ +PP + +GCI
Sbjct: 684 SCIGFPECRAALWFPDSVLEVSRDGSVCPVCHPQPVYRLKFKFKRGSLPPTMPLEFVGCI 743
Query: 719 GGCDETLRQLIEICGTGSRIPARGRGPTA 747
GGCDETLR+ +++ SR P R P++
Sbjct: 744 GGCDETLRETLDL--RFSRGPPRDSQPSS 770
>gi|444525410|gb|ELV14017.1| DNA topoisomerase 3-alpha [Tupaia chinensis]
Length = 967
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/752 (45%), Positives = 467/752 (62%), Gaps = 37/752 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS GR R N M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLSN--------GRMRRN-------------VAMVMTSVSGHL 73
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 74 LVHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 133
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC AV L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 134 ENIGFEIIHVCTAVKPSLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 193
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + +T+ ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 194 IGAAFTRFQTLRLQRVFPEVLTEQ---LISYGSCQFPTLGFVVERFKAIQAFVPETFHRI 250
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H E+G F+W R LF++T+ +++Y +C+++P ATV +V+ + K K+ P L T+
Sbjct: 251 KVNHDHEDGIVEFNWKRHRLFNHTACLVLYHLCMEDPMATVVEVKSKPKSKWRPQALDTV 310
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY GFISYPRTET+ F NL +V +Q P WG
Sbjct: 311 ELEKLASRKLRINAKETMRIAEKLYTQGFISYPRTETNIFPKDLNLTALVDQQTQDPRWG 370
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+A+ +L+ NP +G D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 371 AFARSILERGGP---NPRNGNKSDQAHPPIHPTKYASN---LQGDEQRLYEFIVRHFLAC 424
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G VILA+NYLDVY ++ W ++P Y G +F P+
Sbjct: 425 CSQDAQGQETTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKLLPVYERGSRFQPSA 484
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 485 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 544
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F +A K
Sbjct: 545 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKHVVLRQQVQKYKQVFTEAVAKA 604
Query: 609 VKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F ER + ++ A E +R+C C + +MVL+ + G + C FP
Sbjct: 605 KKLDEALSQYFGERAEVVQQEEMYPAMPEPIRKCPQCNK-DMVLRTKKTGGFYLSCTGFP 663
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ + C C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 664 ECRSAVWFPDSVLEASRDGSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVGCIGGCDET 723
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
LR+++++ SR P R P+ Q N
Sbjct: 724 LREILDL--RFSRGPPRVSQPSGHLQASQSLN 753
>gi|321463458|gb|EFX74474.1| hypothetical protein DAPPUDRAFT_324341 [Daphnia pulex]
Length = 1025
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/759 (45%), Positives = 472/759 (62%), Gaps = 33/759 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEK AK++A +LS+ + R REGRS++NKIYEF +++ Q M +TSV+GHL+
Sbjct: 6 VLNVAEKNDAAKNIAELLSRGRANR-REGRSKFNKIYEFEHNLFNQNVKMSVTSVSGHLL 64
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF Y+KW +P L+ AP+ K V ED ++IK+TLEEE ++ ++L++W DCDREGE
Sbjct: 65 SSDFVGNYKKWQGVNPVTLFEAPIHKFVAEDYQNIKRTLEEETKKSKYLIIWTDCDREGE 124
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI +EVI VC+A+ ++ + RA+FS + + I +A+QNL PN+ +DAVD R E+DLRI
Sbjct: 125 NIGYEVITVCQAIKPNIQVFRAKFSEITYQSIARALQNLGPPNKNVSDAVDVRIELDLRI 184
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ S+ ++SYG CQFPTLGF+VERY IQ E FW +
Sbjct: 185 GAAFTRFQTLRLQKVFPGSLGQS---LISYGSCQFPTLGFIVERYKAIQDFVRENFWKLK 241
Query: 250 CSHK-SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ +EE F W R HLFD T I+ E C + P A + KV+ + K K+ P PL T+
Sbjct: 242 VVWELNEEERVEFLWKRHHLFDQTVVQILLEKCQENPEAEIIKVQTKNKSKWRPLPLDTV 301
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TMK+AE LY GFISYPRTET+ F +L +VQ Q P WG
Sbjct: 302 ELEKLASRKLRINAKETMKIAEKLYTQGFISYPRTETNIFPKELDLTPLVQCQTVDPAWG 361
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQR+LD GL NP G D+AHPPIHPTK++ S +++ KLYE +VRHFLAC
Sbjct: 362 GFAQRVLDE--GL--NPRQGKKSDQAHPPIHPTKYAGNLS--NENERKLYEFIVRHFLAC 415
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
VS+ A G ET+ EI I E F SG I+A+NYL+VY +E W +P GQ+FIPT+
Sbjct: 416 VSKDAQGYETVAEIEIQEEGFVASGLQIVARNYLEVYPYERWSDRSLPQLNEGQRFIPTS 475
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+T+D G T PP LLSEADL+S M+K GIGTDAT DHI+ + R YA + RF P ++
Sbjct: 476 ITMDEGETSPPQLLSEADLISLMEKHGIGTDATHADHIETIKSRQYAGVQGDGRFLPCSL 535
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MG L KPNLR+ +E+D+K V G ++ DVL +++ + F+ A +
Sbjct: 536 GMGLVQGYDAMGIALSKPNLRAELEADLKRVCDGERNPNDVLREQIERYRRVFVQAMEQV 595
Query: 609 VKLLEAMGIFF--ERW-------SGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
+K+ EA+ FF ER GG D A R+C C +M L++ +D
Sbjct: 596 IKIDEALSTFFNEERQEAPPMIPEGGPD---ANLPYRKCPACN-LDMTLRRKKDNGFFFS 651
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C+ FP+C+ AVWLP +V + V CN+C P L++F+F P + H GCIG
Sbjct: 652 CMGFPECKTAVWLPSAVQQVEVDAEKCNACPSHPS-LVRFQFTPGIYAPFYPDTHRGCIG 710
Query: 720 GCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHR 758
GCD +L+ I ++ + NN Q SN R
Sbjct: 711 GCDPNFMELLGIRPLATQ--------PRNQNNTQPSNTR 741
>gi|390341006|ref|XP_782119.2| PREDICTED: DNA topoisomerase 3-alpha [Strongylocentrotus
purpuratus]
Length = 1058
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/686 (47%), Positives = 438/686 (63%), Gaps = 16/686 (2%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
G VLNVAEK AKS+A ++S + R REG S++NKIYEF+YS+ Q C M MTSV
Sbjct: 21 GHATKVLNVAEKNDAAKSIADVMSHGR-YRRREGFSKFNKIYEFDYSMLNQQCDMTMTSV 79
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
+GHL+ +F Y+KWHSC+P L+ APV+K PE+ KDIK+TLE EAR LV+W DC
Sbjct: 80 SGHLLNYEFALAYQKWHSCNPVALFDAPVQKGCPENYKDIKRTLEREARAADVLVIWTDC 139
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENI +EVI+VC+AV L + RARFS + + I +A NLV P+Q + AVD RQ+
Sbjct: 140 DREGENIGYEVIDVCKAVKPRLDVYRARFSEITPQSITRACANLVRPDQRVSQAVDVRQQ 199
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIGA+FTRFQT+ L+ D + +N ++S+G CQFPTLGFVVERY +++A E
Sbjct: 200 LDLRIGAAFTRFQTLRLQRVFPDLL---QNQLISFGSCQFPTLGFVVERYKQVEAFIPET 256
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
F+ I +HK+E+G F W R LFD + + YE+C + P ATV R + K K+ P P
Sbjct: 257 FYKIKVTHKTEDGLVEFHWKRHRLFDQLACQVFYEICTENPLATVVDERSKPKSKWRPLP 316
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L T+ELEK A+R ++S++ MK+AE LY GFISYPRTET+ F NL ++++Q
Sbjct: 317 LDTVELEKLAARKLKISAQQAMKIAEKLYTQGFISYPRTETNIFPKELNLVPLIEKQTQD 376
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
WG +A LL +P G D AHPPIHPTK++ + K+YEL+VRH
Sbjct: 377 AQWGAFAGNLLQQGP----HPRQGKKTDHAHPPIHPTKYNGN---LQGNEQKVYELIVRH 429
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLAC SQ A G ETIV I IA E F+ +G +I+A+NYLDVY +E W +IP Y GQ F
Sbjct: 430 FLACCSQDAQGKETIVNITIAEEEFTATGLMIIARNYLDVYPYEKWNAKIIPVYDRGQTF 489
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
PT+L + G T+ PPLL+EADL++ MDK GIGTDAT +HI+ + R Y + RF
Sbjct: 490 EPTSLEMVDGQTQAPPLLTEADLITLMDKHGIGTDATHAEHIETIKSRLYVGVRPDGRFV 549
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
P +G L GYD+MGYEL KPNLR+ +ESD+K +S G K+ DVLA + + K F++A
Sbjct: 550 PGELGMGLCEGYDNMGYELSKPNLRAELESDLKRISDGQKNPEDVLAEQVDKYKQVFIEA 609
Query: 605 RLKKVKLLEAMGIFFERWSGGED----QQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
K L A+ + + + + Q +A +VR+C C E M LK+ + G MV C
Sbjct: 610 ARKATMLDSALEQYLGQPAQSHNATSLQVSAPSIVRKCPHCNEP-MTLKERKAGGWMVSC 668
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTC 686
+ +P C+ AVW P + A V+ C
Sbjct: 669 MGYPGCKAAVWFPAVIESADVSDTVC 694
>gi|328710041|ref|XP_001950527.2| PREDICTED: DNA topoisomerase 3-alpha-like [Acyrthosiphon pisum]
Length = 915
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/730 (45%), Positives = 453/730 (62%), Gaps = 18/730 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AK++AG LS L+ REG S++NKIYEFN++ +G P M+MTSV+GH
Sbjct: 34 MRVLNVAEKNDAAKNIAGHLSGG-NLQRREGFSKFNKIYEFNHTFQGSPSTMIMTSVSGH 92
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ +F YR W SC P +L+H PV K P D +IKKTL E R C LV+W D DRE
Sbjct: 93 LLGYEFQGSYRSWTSCSPLELFHIPVVKECPNDFINIKKTLVREIRSCNTLVIWTDADRE 152
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI FE+I+VCR VN + + RA S + + +A+ +L PN+ +DAVD R E+DL
Sbjct: 153 GENIGFEIIDVCREVNPRIQVYRAILSEITRPSVQRAISSLGPPNKNISDAVDVRSELDL 212
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR+QTM L+ + + ++SYG CQFPTLGFVVERY +IQ E FW
Sbjct: 213 RIGAAFTRYQTMRLQKVFPEVLAKS---LISYGSCQFPTLGFVVERYKDIQNFIPENFWK 269
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I HK E FSW R LFD I+YE C + PTA V KV ++ K K+ P PL T
Sbjct: 270 IKVHHKIENLDVEFSWQRVRLFDEVLCNILYERCQENPTALVLKVTKKPKSKWRPVPLDT 329
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
IELEK ASR ++++ TMK+AE LY GFISYPRTET+ F NL +VQ + +W
Sbjct: 330 IELEKAASRKLGINAKETMKIAEKLYSQGFISYPRTETNIFPKELNLSNLVQLHVQDNNW 389
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G +AQ +L + P G D+AHPPIHPTK+++G K+YE VVRHFLA
Sbjct: 390 GDFAQSVLINGP----TPRQGKKSDQAHPPIHPTKYTNG---LQDRERKVYEYVVRHFLA 442
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C+S+ A G ETIV I I GE F +G I+A NYL+VY ++ W I Y GQ F+PT
Sbjct: 443 CLSKDAEGEETIVNIEINGEKFLANGLRIIALNYLEVYPYDKWSNKQIHNYDQGQSFMPT 502
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L + G T PP LL+EADL+S MDK GIGTDAT +HI+ + R Y + N F P
Sbjct: 503 GLEIVDGQTSPPNLLTEADLISLMDKHGIGTDATHAEHIETIKSRLYVGLENNKYFVPGE 562
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G LV GYD+MG+E+ KP+LR+ +E+D+K++ G KS VL + + K F+ +
Sbjct: 563 LGIGLVEGYDNMGFEMSKPHLRAELEADLKKICEGTKSPLVVLREQIAKYKDVFIKTTEQ 622
Query: 608 KVKLLEAMGIFFER-----WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN-LMVGCL 661
KL +++G + + + + A + +R+C +C+++N+VLKK ++ + C
Sbjct: 623 VEKLDQSLGKYLRTQPVAFLNNAQHESMAVKNIRKCPVCKQTNLVLKKKQNNQGFFISCT 682
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
FP CRN WLP SV +A V+ N C+ C+ G + L++F+F + P + + GCI GC
Sbjct: 683 GFPTCRNTYWLPPSVIDAQVSDNICSECS-GGIKLVKFQFSARSMRPHYPDTYEGCINGC 741
Query: 722 DETLRQLIEI 731
D TL +++++
Sbjct: 742 DSTLCEILQV 751
>gi|74216779|dbj|BAE37792.1| unnamed protein product [Mus musculus]
Length = 694
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 318/669 (47%), Positives = 440/669 (65%), Gaps = 15/669 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++SG D +LYE +VRHFLAC
Sbjct: 391 AFAQTILERGGPTPRN---GSKSDQAHPPIHPTKYTSG---LQGDDRRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ + ER + ++ A E VR+C C + +MVLK + G + C+ FP
Sbjct: 625 KKLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCMGFP 683
Query: 665 QCRNAVWLP 673
+CR+AVW P
Sbjct: 684 ECRSAVWFP 692
>gi|345487699|ref|XP_001605592.2| PREDICTED: DNA topoisomerase 3-alpha-like [Nasonia vitripennis]
Length = 1138
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 323/731 (44%), Positives = 448/731 (61%), Gaps = 20/731 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AK++AG LS+ R +EG S YNKIYEF + + C M+MTSV+GH
Sbjct: 45 MKVLNVAEKNDAAKNIAGYLSRGTSRR-KEGLSPYNKIYEFQSRLWNKDCQMIMTSVSGH 103
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDK-KDIKKTLEEEARRCQWLVLWLDCDR 126
L+ +F YRKW+ C P L+ APV K +D + IKKT+E E R C L++W DCDR
Sbjct: 104 LLNYEFTGAYRKWYGCPPLSLFEAPVVKQCQQDNYEKIKKTIEREVRSCSALIIWTDCDR 163
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VC+AV ++ + RA+FS + I +A+Q+L +PN+ +DAVD R E+D
Sbjct: 164 EGENIGFEIIQVCQAVKPNIRVYRAKFSEITQISIDRALQSLEEPNKAISDAVDVRSELD 223
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQTM L+ ++ D +++SYGPCQFPTLGFVVER+ I+ E E +W
Sbjct: 224 LRIGAAFTRFQTMRLQKAFPRNLAD---MLISYGPCQFPTLGFVVERFLAIERFEPEPYW 280
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ +H E F W R LF+ + ++C + P ATV KV + K K+ P PL
Sbjct: 281 KLKVTHLQNELNVEFRWARNRLFEKLPCEVFLDICQENPQATVEKVTAKPKSKWRPLPLD 340
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEK+ SR R+S++ TM++AE LY GFISYPRTET+ F NL +VQ+Q + D
Sbjct: 341 TIELEKQGSRKLRLSAKETMQIAEKLYTGGFISYPRTETNIFPKEMNLSTLVQQQTANGD 400
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQR+LD P G D+AHPPIHPTKF+ + ++YE VVRHFL
Sbjct: 401 WGGFAQRVLDEGI----TPRQGKKSDQAHPPIHPTKFTD---TLRGNEARVYEYVVRHFL 453
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S+ A G ETIVEI+IAGE F +G ILAKNYL+V+ +E W I Y GQ F+P
Sbjct: 454 ACLSKNAEGHETIVEIDIAGEKFVATGLQILAKNYLEVFIYEKWNAKEIHIYERGQTFMP 513
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T PP LL+EADL++ MDK GIGTDAT +HI+ + R Y N P
Sbjct: 514 TSIEMLEETTSPPNLLTEADLIALMDKHGIGTDATHAEHIETIKSRQYVGLRDNKYLIPG 573
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LVMGYD MG+++ KP+LR+ +E+D+K + G K+ +V + + + + F +A +
Sbjct: 574 KLGIGLVMGYDRMGFQMSKPHLRAELENDLKLICDGVKTPDEVRQSMINKYREVFREALV 633
Query: 607 KKVKLLEAMGIFFERWSGGEDQQAAGEVVR-----QCGICQESNMVLKKSRDGN-LMVGC 660
K + A+ + + +Q V +C C SNMV+K R GN +GC
Sbjct: 634 KANMIDAALAQYLDEQPEAIEQADIAVPVEDVPILRCPKCN-SNMVVKTKRQGNGKYIGC 692
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGG 720
+ +P C N +WLP SV E + CN C + I+ + ++ I P F ++ CIGG
Sbjct: 693 MGYPTCNNVIWLPESVEEVEILDEGCNQCPDNILKKIKVRLTRN-IFPQFGTSYTACIGG 751
Query: 721 CDETLRQLIEI 731
CD+ L+ I
Sbjct: 752 CDDMFNNLMGI 762
>gi|156381054|ref|XP_001632081.1| predicted protein [Nematostella vectensis]
gi|156219132|gb|EDO40018.1| predicted protein [Nematostella vectensis]
Length = 940
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 332/761 (43%), Positives = 468/761 (61%), Gaps = 33/761 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AK ++ I+S+ Q R REG+SR+NKIYEFN++I M+MTSV+GH
Sbjct: 1 MRVLNVAEKNDAAKELSRIMSRGQCTR-REGQSRFNKIYEFNFNILNANARMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM L+F YRKW SC P L+ APV K+V ED IKKTLE E R Q L++W DCDRE
Sbjct: 60 LMSLEFAIAYRKWSSCSPLSLFDAPVVKNVGEDYLPIKKTLECEVRGSQALIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI E+I+VC V + + RARFS + + + +A NLV P++ ++AVD R E+DL
Sbjct: 120 GENIGHEIIDVCTKVCPRIKVYRARFSEITPQSVQRACANLVAPDRLQSEAVDVRMELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQT+ L+ ++D ++SYG CQFPTLGFVVERY ++Q E+F+
Sbjct: 180 RIGAAFTRFQTLRLQKVFPGFLSDQ---LISYGSCQFPTLGFVVERYKQVQQFVPEQFFK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I SH++ +G F W RG LF +I+Y+MC++ PTA V + K K+ P PL T
Sbjct: 237 IKVSHETPDGQVDFVWKRGRLFHRLPCLILYQMCLESPTAKVLSTSSRPKSKWRPLPLDT 296
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ELEK ASR ++++ TMK+AE LY G S TET +F++ ++ ++ G
Sbjct: 297 VELEKLASRKLHINAKETMKIAEKLYTQGRYSVTGTETTTFNAVESMISYIEFVTG---- 352
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
+A +L + NP G D AHPPIHPT++++ + +LYE +VRHFLA
Sbjct: 353 --FASDVLANGP----NPRQGSKTDNAHPPIHPTQYTNN---LQGNDKRLYEFIVRHFLA 403
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C SQ A G ET VEI+IAGE F+ +G +I A+NYLDVY ++ W VIP Y ++F PT
Sbjct: 404 CCSQDAQGRETSVEIDIAGEKFTATGLMITARNYLDVYPYDRWSTKVIPVYETNEEFQPT 463
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
++ + G T PPPLL+EADL++ M+K GIGTDAT DHI+ + R Y + F P
Sbjct: 464 SIEMVDGETTPPPLLTEADLIALMEKHGIGTDATHADHIETIKSRSYVGVQGDGTFLPGQ 523
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G LV GYD M +E KP LRS +E+D+K + G KS A VL + + K F+ A +
Sbjct: 524 LGMGLVEGYDLMHFEFSKPKLRSGLEADLKRICDGTKSGAVVLREQIAKYKENFIQAAQE 583
Query: 608 KVKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGN------LM 657
+KL +A+ +F + +Q+ AA +VR C C++ M L+K+++G M
Sbjct: 584 AIKLDQALSNYFGDPADFIEQELDPLAADPIVRPCPRCEQHQMTLRKTKEGRQVKLSFYM 643
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGC 717
+GC FPQCR +++LP SV V + C C P V++++F F++ +PP + ++GC
Sbjct: 644 IGCQGFPQCRASIFLPKSVLALTVDESVCPVCRPRDVHMLRFTFKRGSVPPMTPLQYVGC 703
Query: 718 IGGCDETLRQLIEIC----GTGSRIPARG--RGPTASSNNG 752
IGGCDE L + ++I T P+RG RG + SS G
Sbjct: 704 IGGCDEMLTETLDIKDISRNTRGSQPSRGQSRGRSQSSQFG 744
>gi|395517927|ref|XP_003763121.1| PREDICTED: DNA topoisomerase 3-alpha, partial [Sarcophilus
harrisii]
Length = 888
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 306/681 (44%), Positives = 436/681 (64%), Gaps = 16/681 (2%)
Query: 81 HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR 140
SC+P L+ A + K+ PE+ DIKKTLE+E ++CQ L++W DCDREGENI FE+I VC+
Sbjct: 1 QSCNPLVLFEAQIEKYCPENFVDIKKTLEKEVKQCQSLLIWTDCDREGENIGFEIIHVCK 60
Query: 141 AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML 200
AV +L + RARFS + + A Q+L +P+Q +DAV+ RQE+DLRIGA+FTRFQT+
Sbjct: 61 AVKPNLRVFRARFSEITANAVKTACQHLTEPDQRVSDAVEVRQELDLRIGAAFTRFQTLR 120
Query: 201 LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTAT 260
L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I +H+ E+G
Sbjct: 121 LQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPETFHKIKVTHEHEDGVVD 177
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
FSW R LF++T+ +++Y+MC+++P ATV +V + K K+ P PL T+ELEK ASR ++
Sbjct: 178 FSWKRHRLFNHTACLVLYQMCMEDPVATVVEVASKPKSKWRPQPLDTVELEKLASRKLKI 237
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
+++ TMK+AE LY G+ISYPRTET+ F NL +VQ+Q WG +AQR+LD
Sbjct: 238 NAKETMKIAEKLYTQGYISYPRTETNIFPKDLNLTTLVQQQTHDQQWGAFAQRILDRGGP 297
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
RN G D+AHPPIHPTK++ + +LYE +VRHFLAC S+ A+G ET V
Sbjct: 298 TPRN---GKKSDQAHPPIHPTKYTCN---LQGNEKRLYEFIVRHFLACCSEDALGQETTV 351
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
EI+IA E F G +ILA+NYLDVY ++ W VIP Y F PTT+ + G T PP
Sbjct: 352 EIDIAQERFVAHGLMILARNYLDVYIYDKWSDKVIPIYEKDSCFQPTTIEMVDGETSPPQ 411
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++G LV GYD MG
Sbjct: 412 LLTEADLIALMEKHGIGTDATHAEHIETIKSRMYVGLTSDKRFLPGHLGMGLVEGYDSMG 471
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
YE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A KL EA+ +F
Sbjct: 472 YEMSKPDLRAELEADLKLICEGKKDKHVVLRQQIQKYKQVFIEAVAHANKLDEALSQYFG 531
Query: 621 RWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV 676
+ +Q+ A E +R+C C + +MVLK+ ++G + C+ +P CR A+W P SV
Sbjct: 532 EMATAVEQEELYPAMPETIRKCPQCNK-DMVLKRKKNGGFYISCMGYPDCRKAIWFPDSV 590
Query: 677 SEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGS 736
E + + C C P PVY ++ KF++ +PP + +GC+GGCDETL Q++++ S
Sbjct: 591 LEVSKDESVCPVCKPHPVYRLKLKFKRGSVPPTMPLEFVGCVGGCDETLSQILDL--RSS 648
Query: 737 RIPARGRGPTASSNNGQQSNH 757
P+R P+ N Q+N
Sbjct: 649 SGPSRASQPSGQPTNYLQANQ 669
>gi|348689657|gb|EGZ29471.1| hypothetical protein PHYSODRAFT_470148 [Phytophthora sojae]
Length = 916
Score = 620 bits (1599), Expect = e-174, Method: Compositional matrix adjust.
Identities = 328/637 (51%), Positives = 426/637 (66%), Gaps = 20/637 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGR-SRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+ VLNVAEKPSVAK +A ILS + R+ R S+YN ++EF Y I GQ M++TSVTG
Sbjct: 1 MKVLNVAEKPSVAKEIASILSLGRSQRVCAARFSKYNALFEFPYQIHGQQVQMVVTSVTG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDC 124
H+MELDFD R WHSCDP DL+ APV K + D +K I+KTL +EAR+ QWLVLWLDC
Sbjct: 61 HIMELDFDASVRGWHSCDPVDLFTAPVCKRIRSDDTQKKIEKTLLKEARQSQWLVLWLDC 120
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENIA+EV +C N L + RARFSALI R+I AVQNL +PN+ + AVDAR E
Sbjct: 121 DREGENIAYEVKCICERSNRRLRVFRARFSALIPRDIIHAVQNLAEPNEKLSLAVDARSE 180
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
IDLRIGA+FTRFQTM +++ ++ +++ V+SYGPCQFPTLGFVVER+ +IQ E E
Sbjct: 181 IDLRIGAAFTRFQTMRIQS-RFPAIKQEKS-VISYGPCQFPTLGFVVERFLKIQNFEREA 238
Query: 245 FWTINCSHKSEEG----TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
F+ I+ +H+ + T TF W RGHLFD + + IYE V+ TAT+ V ++ K
Sbjct: 239 FYYISVTHQQTDQPDAPTTTFKWKRGHLFDRMACLCIYECLVESQTATIESVDKRPSWKR 298
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T+EL+KRASR+ R+SSE TMK AE LY GFISYPRTET F GT+L +V+
Sbjct: 299 KPLPLTTVELQKRASRWLRISSEATMKAAESLYNKGFISYPRTETSKFKEGTDLMSLVRL 358
Query: 361 QIGHPDWGPY-AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
H WG Y AQ+LLD G + P G DD+AHPPIHPTK + + + K+YE
Sbjct: 359 HENHQQWGNYVAQQLLD--GGKYEAPRHGNSDDQAHPPIHPTKSVNVNTLSDPNEKKVYE 416
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
V RHFLAC S+ A G++T V + + GE F+ SG ++ +NYLD+Y++E W IP Y
Sbjct: 417 FVTRHFLACCSRDAKGSQTSVVMRMLGESFTASGLMVEERNYLDIYKYEKWNASAIPVYQ 476
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G F P+T+ + SG T PPPLLSEADL++ MD GIGTDAT+ +HIK +L R YAIK
Sbjct: 477 RGDVFHPSTVVMLSGETNPPPLLSEADLIAKMDSNGIGTDATIAEHIKTILKREYAIKVN 536
Query: 540 N-TRFAPTNIGEALVMGYDDMGYELWKPNLRS----MMESDMKEVSVGNKSKADVLANCL 594
N T+F PT +G ALV+ Y+ MG EL KP LR+ MME+D K +S+G K V+ +C+
Sbjct: 537 NDTQFKPTTLGLALVLSYEHMGLELAKPVLRAAVSRMMENDCKAISLGRKEIQQVVRSCM 596
Query: 595 QQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAA 631
QMK+ FL+ L + F E++ +Q AA
Sbjct: 597 DQMKSIFLEVTRSAAVLDQT---FSEQFGQPVNQSAA 630
>gi|296088524|emb|CBI37515.3| unnamed protein product [Vitis vinifera]
Length = 373
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/352 (82%), Positives = 321/352 (91%), Gaps = 1/352 (0%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEKPSVAK+VA ILS+NQGLR+REGRSRYNK++EFNYSIRGQ C M++TSV GH
Sbjct: 1 MKVLNVAEKPSVAKAVATILSRNQGLRVREGRSRYNKLFEFNYSIRGQHCQMVVTSVIGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LMEL+F++R+RKWHSCDPA LYHAPVRK VPEDK DIK+TLEEEAR+CQWLVLWLDCDRE
Sbjct: 61 LMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVLWLDCDRE 120
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV+EVC VN H+ + RARFSALIDREIH++VQNLV PNQ FADAVD RQEIDL
Sbjct: 121 GENIAFEVLEVCAQVNRHIDVWRARFSALIDREIHESVQNLVRPNQLFADAVDVRQEIDL 180
Query: 188 RIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
RIGASFTRFQTMLL++ F +D DDRNLVLSYGPCQFPTLGFVVERYWEIQ+HE EEFW
Sbjct: 181 RIGASFTRFQTMLLRDAFVLDFAADDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW 240
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
TINCSHKS+EGT+TF+WMR HLFDYT AVIIYEMC+QEPTATVTKVRQQEKLKYPP+PL+
Sbjct: 241 TINCSHKSDEGTSTFNWMRAHLFDYTCAVIIYEMCIQEPTATVTKVRQQEKLKYPPHPLN 300
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
TIELEKRASRYF MSSEHTMKVAEDLYQ GFISYPRTETD FS T+LH +
Sbjct: 301 TIELEKRASRYFHMSSEHTMKVAEDLYQTGFISYPRTETDYFSERTDLHSYL 352
>gi|428186174|gb|EKX55025.1| hypothetical protein GUITHDRAFT_156833 [Guillardia theta CCMP2712]
Length = 652
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 311/647 (48%), Positives = 432/647 (66%), Gaps = 14/647 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPSVAK +A ILS+ + S+YN+ +EF+Y + G+PC +++TSVTGHLM
Sbjct: 6 VLCVAEKPSVAKELAAILSQGHA-QAFNTHSQYNRKFEFSYELDGRPCTLVVTSVTGHLM 64
Query: 70 ELDFDERYRKWHSCDPADLYHAPVR--KHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
E DFDE +RKWH+C+P L ++ K +P+DKK +++ L EE RRC LV +LDCDRE
Sbjct: 65 ERDFDESHRKWHTCEPIQLLDPSIQVIKMIPQDKKGLERNLLEEGRRCGQLVCFLDCDRE 124
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI++EVIE+C+ N + +RRA FSALI R+IH+A++ L PNQ ++AV+AR EIDL
Sbjct: 125 GENISYEVIEICQKANPRIRVRRAHFSALIPRDIHRAMRTLTLPNQSLSEAVEARSEIDL 184
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+GA+FTRFQTM+L + ++D +LS+GPCQF TLGF+V+R W+I+ E+FW+
Sbjct: 185 RLGAAFTRFQTMVLGK-RFEQLSDK---LLSWGPCQFATLGFIVDRAWKIERFVPEDFWS 240
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
C+ + TA F W RG LFD + +IYEM +++P ATV V ++ K ++ P PLST
Sbjct: 241 FRCNLSRDGKTAHFDWRRGRLFDRVACTLIYEMLMEDPIATVNSVHERLKERWRPLPLST 300
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ L+ ASR RMSSE TM++AE+LY GFISYPRTET+ F GTNL ++ +Q W
Sbjct: 301 VNLQTIASRKLRMSSEETMQIAEELYNKGFISYPRTETEKFKEGTNLQELISKQCESGHW 360
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA LL AG ++ P +G +DD+AHPPIHPT+F++ S +LYELVVRHFLA
Sbjct: 361 GNYANELL---AGSFQWPRAGQNDDQAHPPIHPTQFTNS---LSGKQAQLYELVVRHFLA 414
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C S+ A+GAET VEI+I E F + G +I N+L VY +E W IP + G+QF PT
Sbjct: 415 CCSKNAIGAETTVEISIGVEQFVSKGLMIKELNWLKVYPYERWSDKDIPIFTEGEQFEPT 474
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L + G T+ PPLLSEADL+S MD GIGTDAT+ +HI K+ R YAIK + +F+PT+
Sbjct: 475 ELAMTEGRTQAPPLLSEADLISLMDSHGIGTDATIAEHITKVQQRDYAIKSDSQQFSPTS 534
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G++LV Y+ +G EL +P+ R+ ME DM +++ G S V+ ++ MK F
Sbjct: 535 LGKSLVTSYEAIGLELARPHFRARMEQDMTKIASGQTSARVVIEEWMEIMKPIFQRCIAG 594
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDG 654
+ ++ + M +FF+ + Q V QCG+C M LKK R+G
Sbjct: 595 QTQMAQEMSVFFQPLNASSWSQTLQRNVSQCGVC-SGLMDLKKQRNG 640
>gi|194383072|dbj|BAG59092.1| unnamed protein product [Homo sapiens]
Length = 906
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 317/721 (43%), Positives = 451/721 (62%), Gaps = 28/721 (3%)
Query: 81 HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR 140
SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREGENI FE+I VC+
Sbjct: 11 QSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 70
Query: 141 AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML 200
AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLRIGA+FTRFQT+
Sbjct: 71 AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLR 130
Query: 201 LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTAT 260
L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I +H ++G
Sbjct: 131 LQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVE 187
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
F+W R LF++T+ +++Y++CV++P ATV +VR + K K+ P L T+ELEK ASR R+
Sbjct: 188 FNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRI 247
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
+++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG +AQ +L+
Sbjct: 248 NAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGP 307
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC SQ A G ET V
Sbjct: 308 TPRN---GNKSDQAHPPIHPTKYTNN---LQGDEQRLYEFIVRHFLACCSQDAQGQETTV 361
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
EI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP
Sbjct: 362 EIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPK 421
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G LV GYD MG
Sbjct: 422 LLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMG 481
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
YE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K KL EA+ +F
Sbjct: 482 YEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFG 541
Query: 621 RWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV 676
+ Q+ A E +R+C C + +MVLK ++G + C+ FP+CR+AVWLP SV
Sbjct: 542 NGTELAQQEDIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECRSAVWLPDSV 600
Query: 677 SEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGS 736
EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+TLR+++++ +G
Sbjct: 601 LEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGG 660
Query: 737 RIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP--SQFSGSRNARANGMNPQS 794
P R P+ Q N +M +S P S+ +GS A A + P +
Sbjct: 661 --PPRASQPSGRLQANQSLN----------RMDNSQHPQPADSRQTGSSKALAQTLPPPT 708
Query: 795 G 795
Sbjct: 709 A 709
>gi|301092946|ref|XP_002997323.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
gi|262110843|gb|EEY68895.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
Length = 907
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 319/609 (52%), Positives = 408/609 (66%), Gaps = 17/609 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRI-REGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+ VLNVAEKPSVAK +A ILS + R+ R G S+YN ++EF Y +RGQ M++TSVTG
Sbjct: 1 MKVLNVAEKPSVAKEIANILSSGRSHRVCRAGFSKYNALFEFPYQVRGQQVQMVVTSVTG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDC 124
H+MELDFD R WHSCDP DL+ APV K + D +K I+KTL EEA+ QWLVLWLDC
Sbjct: 61 HIMELDFDASVRSWHSCDPVDLFTAPVTKKIRSDETQKKIEKTLMEEAKHSQWLVLWLDC 120
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENIA+EV +C N L + RARFSALI R+I AVQNL PN+ + AVDAR E
Sbjct: 121 DREGENIAYEVKSICEKTNSRLRVFRARFSALIPRDIVHAVQNLSQPNEKLSLAVDARSE 180
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
IDLRIGA+FTRFQTM +++ ++ ++N V+SYGPCQFPTLGFVVER+ +I+ E E
Sbjct: 181 IDLRIGAAFTRFQTMRIQS-RFPALNQEKN-VISYGPCQFPTLGFVVERFLKIRNFEREA 238
Query: 245 FWTINCSHKSEEG----TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
F+ I+ +H+ + T TF W RGH FD + + IYE V+ TA + V ++ K
Sbjct: 239 FYYISVTHQQTDQPDAPTTTFKWKRGHFFDRMACLCIYESLVESQTAAIESVDKRPSWKR 298
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T+EL+KRASR+ R+SSE TMK AE LY G ISYPRTET F GT+L +V+
Sbjct: 299 KPLPLTTVELQKRASRWLRISSEATMKAAESLYNKGLISYPRTETSKFKEGTDLMSLVRA 358
Query: 361 QIGHPDWGPYAQR-LLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
H WG Y R LLD G + P G DD+AHPPIHPTK + D K+YE
Sbjct: 359 HETHQQWGNYVTRQLLD--GGKYEAPRHGNSDDQAHPPIHPTKSVDLNTLPDPDEKKVYE 416
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
V HFLAC S+ A G++T V + + E F SG ++ +NYLD+Y++E W IP Y
Sbjct: 417 FVSLHFLACCSRDAKGSQTSVVMAMLNERFIASGLMVEERNYLDIYKYEKWNASAIPVYK 476
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
HG F P+TL + SG T PPPLLSEADL++ MD GIGTDAT+ +HIK +L R YAIK
Sbjct: 477 HGDVFRPSTLVMLSGDTNPPPLLSEADLIAKMDSNGIGTDATIAEHIKTILKREYAIKVN 536
Query: 540 N-TRFAPTNIGEALVMGYDDMGYELWKPNLRS----MMESDMKEVSVGNKSKADVLANCL 594
N T+F PT +G ALV+ Y+ MG EL KP LR+ +ME+D K +S+G K+ V+ +C+
Sbjct: 537 NETQFKPTTLGLALVLSYEHMGLELAKPVLRAAVSLIMENDCKAISLGQKALRQVVDSCM 596
Query: 595 QQMKACFLD 603
QMK FL+
Sbjct: 597 AQMKGIFLE 605
>gi|340376735|ref|XP_003386887.1| PREDICTED: DNA topoisomerase 3-alpha-like [Amphimedon
queenslandica]
Length = 981
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 323/747 (43%), Positives = 452/747 (60%), Gaps = 23/747 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+LNVAEK AK +A ++S +G + REG S++NKIYEFN I G+ M+MTSV+GHLM
Sbjct: 10 ILNVAEKNDAAKELAKVMSGRRGFQRREGFSKFNKIYEFNLHILGREHQMVMTSVSGHLM 69
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+LDF + YR W +C P L+ A V K V D IK+T++ E R CQ ++LW D DREGE
Sbjct: 70 QLDFIQIYRNWQNCAPIKLFDAQVEKSVQPDFIPIKRTIQREIRGCQDVILWTDGDREGE 129
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
+IA E+++VC V L + RARFS + + I +A NL ++ DAV+ARQE+DLRI
Sbjct: 130 DIAQEIVDVCFEVRQRLRIHRARFSEITPQSITRACTNLTVLDKRMVDAVEARQELDLRI 189
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
G +FTRFQTM L+ + ++D ++SYGPCQFPTLGFVV+RY EIQA E F+ I
Sbjct: 190 GCAFTRFQTMRLRKVFPNILSDQ---LVSYGPCQFPTLGFVVDRYKEIQAFVPETFYKIT 246
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H++ +F+W R LF++T +I+Y++C++ PTA V ++ + K K+ P PL T+E
Sbjct: 247 VTHQASNENVSFNWKRVRLFNHTCCLILYQLCMENPTARVVDIKSKPKSKWRPCPLDTVE 306
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK SR R+S++ TMK+AE LY GFISYPRTET+ F +L +++EQ WG
Sbjct: 307 LEKLCSRKLRISAKETMKIAEKLYTQGFISYPRTETNIFPESFDLVSLIREQTQDHRWGG 366
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A +L + P +G D AHPPIHP K+++ + + +LYE VVRHFLAC
Sbjct: 367 FAGNVL----SVGPTPRNGQKTDNAHPPIHPVKYTNS---LTGNEQRLYEFVVRHFLACC 419
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
S+ A G ET VEI I GE F G VI A+NYLDVY ++ W +P Y F+P+ +
Sbjct: 420 SKNAEGNETTVEIEIGGERFIAKGLVITARNYLDVYIYDKWADKTLPQYQLNGTFLPSAI 479
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL EADL++ MDK GIGTDAT +HI+ + R Y ++ F P +G
Sbjct: 480 EMIEGETNPPSLLQEADLIALMDKHGIGTDATHAEHIETIKTRSYVGVQSDGSFVPGELG 539
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGY+L KP LR+ +E +K + G +K DV+ L + K F+ A+ +
Sbjct: 540 IGLVEGYDSMGYQLSKPKLRAELEDKLKRICDGYCTKDDVVREMLDKYKRVFVQAKQQAR 599
Query: 610 KLLEAMGIFFERWSGGEDQQAAGE-----VVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL ++ +F +Q+ E VR+C C+E +MV+K+ +DG M+ CL FP
Sbjct: 600 KLDLSLSKYFGEARDFNEQEQTQEPLLSDAVRRCPFCKEKDMVVKRKKDGGYMLSCLGFP 659
Query: 665 QCRNAVWLPGSVSEAAV-TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDE 723
CR+ + P SV EA T CN+C P PV + FKF++ P + + GC CD
Sbjct: 660 HCRSLQFFPSSVIEAKPHPTQRCNNCYPPPVSYLSFKFQRGSTPHFMSDEYTGC-STCDG 718
Query: 724 TLRQLIEICGTGSRIPARGRGPTASSN 750
GS +RGRG ++N
Sbjct: 719 ------RGSTRGSSTHSRGRGFNHTNN 739
>gi|410051780|ref|XP_003953166.1| PREDICTED: DNA topoisomerase 3-alpha [Pan troglodytes]
Length = 906
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 308/680 (45%), Positives = 435/680 (63%), Gaps = 16/680 (2%)
Query: 81 HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR 140
SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREGENI FE+I VC+
Sbjct: 11 QSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 70
Query: 141 AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML 200
AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLRIGA+FTRFQT+
Sbjct: 71 AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLR 130
Query: 201 LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTAT 260
L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I +H +G
Sbjct: 131 LQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHRDGIVE 187
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+ELEK ASR R+
Sbjct: 188 FNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRI 247
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
+++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG +AQ +L+
Sbjct: 248 NAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGP 307
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC SQ A G ET V
Sbjct: 308 TPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLACCSQDAQGQETTV 361
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
EI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP
Sbjct: 362 EIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPK 421
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G LV GYD MG
Sbjct: 422 LLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMG 481
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
YE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K KL EA+ +F
Sbjct: 482 YEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFG 541
Query: 621 RWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV 676
+ Q+ A E +R+C C + +MVLK ++G + C+ FP+CR+AVWLP SV
Sbjct: 542 NGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECRSAVWLPDSV 600
Query: 677 SEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGS 736
EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+TLR+++++ S
Sbjct: 601 LEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTLREILDL--RFS 658
Query: 737 RIPARGRGPTASSNNGQQSN 756
R P R P+ Q N
Sbjct: 659 RGPPRASQPSGRLQANQSLN 678
>gi|392351278|ref|XP_002742497.2| PREDICTED: DNA topoisomerase 3-alpha [Rattus norvegicus]
Length = 977
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 326/752 (43%), Positives = 458/752 (60%), Gaps = 43/752 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E + CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A ++L +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G V +Q H
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQG---------------------VSQQPAHLG-- 367
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+L P IHPTK++S D +LYE +VRHFLAC
Sbjct: 368 -----ILMKFXXXXXXXXXXXXXXXXXP-IHPTKYTSS---LQGDDRRLYEFIVRHFLAC 418
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G +F P+T
Sbjct: 419 CSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGFRFQPST 478
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 479 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 538
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KPNLR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 539 GMGLVEGYDSMGYEMSKPNLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKA 598
Query: 609 VKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ + ER + ++ A E VR+C C + +MVLK + G + C FP
Sbjct: 599 KKLDEALSQYLGERTEVAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCTGFP 657
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ ++ C+ C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 658 ECRSAVWFPDSVLEASRDSSVCSVCQPAPVYRLKLKFKRGSLPPSMPLEFVGCIGGCDET 717
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
L+++ + SR P R P+ Q N
Sbjct: 718 LKEIFGL--RFSRAPPRASQPSGHLQASQALN 747
>gi|325191457|emb|CCA26230.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2383
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 324/676 (47%), Positives = 421/676 (62%), Gaps = 18/676 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L + P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQG-NKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQMKA F
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQMKAIF 623
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQ--QAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
+ +A F R D + + CGIC +S M+L++ ++ + +
Sbjct: 624 SSIQQSANVFDQAFTQVFRRNEPNLDSITSSISRALSSCGIC-DSKMILQQVQNRSTQLT 682
Query: 660 CLAFPQCRNAVWLPGS 675
C C +LP +
Sbjct: 683 CHT---CCQTYFLPAA 695
>gi|325191461|emb|CCA26234.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2356
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 324/676 (47%), Positives = 421/676 (62%), Gaps = 18/676 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L + P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQG-NKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQMKA F
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQMKAIF 623
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQ--QAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
+ +A F R D + + CGIC +S M+L++ ++ + +
Sbjct: 624 SSIQQSANVFDQAFTQVFRRNEPNLDSITSSISRALSSCGIC-DSKMILQQVQNRSTQLT 682
Query: 660 CLAFPQCRNAVWLPGS 675
C C +LP +
Sbjct: 683 CHT---CCQTYFLPAA 695
>gi|332261728|ref|XP_003279919.1| PREDICTED: DNA topoisomerase 3-alpha isoform 2 [Nomascus
leucogenys]
Length = 906
Score = 613 bits (1582), Expect = e-172, Method: Compositional matrix adjust.
Identities = 308/680 (45%), Positives = 436/680 (64%), Gaps = 16/680 (2%)
Query: 81 HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR 140
SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREGENI FE+I VC+
Sbjct: 11 QSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 70
Query: 141 AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML 200
AV +L + RARFS + + A +NL +P++ +DAVD RQE+DLRIGA+FTRFQT+
Sbjct: 71 AVKPNLQVLRARFSEITPHAVRTACENLTEPDRRVSDAVDVRQELDLRIGAAFTRFQTLR 130
Query: 201 LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTAT 260
L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I +H ++G
Sbjct: 131 LQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVE 187
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+ELEK ASR R+
Sbjct: 188 FNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRI 247
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
+++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG +AQ +L+
Sbjct: 248 NAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGP 307
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC SQ A G ET V
Sbjct: 308 TPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLACCSQDAQGQETTV 361
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
EI+I E F G VILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP
Sbjct: 362 EIDITQERFVAHGLVILARNYLDVYPYDHWSDKILPIYERGSCFQPSTVEMVDGETSPPK 421
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G LV GYD MG
Sbjct: 422 LLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMG 481
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
YE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K KL EA+ +F
Sbjct: 482 YEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFG 541
Query: 621 RWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV 676
+ Q+ A E +R+C C + +MVLK ++G + C+ FP+CR+AVWLP SV
Sbjct: 542 NRTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECRSAVWLPDSV 600
Query: 677 SEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGS 736
EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCDETLR+++++ S
Sbjct: 601 LEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDETLREILDL--RFS 658
Query: 737 RIPARGRGPTASSNNGQQSN 756
R P+R P+ Q N
Sbjct: 659 RGPSRASQPSGRLQASQSLN 678
>gi|325191455|emb|CCA26228.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2390
Score = 613 bits (1581), Expect = e-172, Method: Compositional matrix adjust.
Identities = 325/676 (48%), Positives = 421/676 (62%), Gaps = 18/676 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L R P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQGNKYER-PRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQMKA F
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQMKAIF 623
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQ--QAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
+ +A F R D + + CGIC +S M+L++ ++ + +
Sbjct: 624 SSIQQSANVFDQAFTQVFRRNEPNLDSITSSISRALSSCGIC-DSKMILQQVQNRSTQLT 682
Query: 660 CLAFPQCRNAVWLPGS 675
C C +LP +
Sbjct: 683 CHT---CCQTYFLPAA 695
>gi|325191458|emb|CCA26231.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2417
Score = 613 bits (1581), Expect = e-172, Method: Compositional matrix adjust.
Identities = 324/676 (47%), Positives = 421/676 (62%), Gaps = 18/676 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L + P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQG-NKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQMKA F
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQMKAIF 623
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQ--QAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
+ +A F R D + + CGIC +S M+L++ ++ + +
Sbjct: 624 SSIQQSANVFDQAFTQVFRRNEPNLDSITSSISRALSSCGIC-DSKMILQQVQNRSTQLT 682
Query: 660 CLAFPQCRNAVWLPGS 675
C C +LP +
Sbjct: 683 CHT---CCQTYFLPAA 695
>gi|325191452|emb|CCA26225.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2419
Score = 613 bits (1581), Expect = e-172, Method: Compositional matrix adjust.
Identities = 324/676 (47%), Positives = 421/676 (62%), Gaps = 18/676 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L + P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQG-NKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQMKA F
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQMKAIF 623
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQ--QAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
+ +A F R D + + CGIC +S M+L++ ++ + +
Sbjct: 624 SSIQQSANVFDQAFTQVFRRNEPNLDSITSSISRALSSCGIC-DSKMILQQVQNRSTQLT 682
Query: 660 CLAFPQCRNAVWLPGS 675
C C +LP +
Sbjct: 683 CHT---CCQTYFLPAA 695
>gi|325191459|emb|CCA26232.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2392
Score = 613 bits (1581), Expect = e-172, Method: Compositional matrix adjust.
Identities = 324/676 (47%), Positives = 421/676 (62%), Gaps = 18/676 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L + P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQG-NKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQMKA F
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQMKAIF 623
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQ--QAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
+ +A F R D + + CGIC +S M+L++ ++ + +
Sbjct: 624 SSIQQSANVFDQAFTQVFRRNEPNLDSITSSISRALSSCGIC-DSKMILQQVQNRSTQLT 682
Query: 660 CLAFPQCRNAVWLPGS 675
C C +LP +
Sbjct: 683 CHT---CCQTYFLPAA 695
>gi|340724036|ref|XP_003400391.1| PREDICTED: DNA topoisomerase 3-alpha-like [Bombus terrestris]
Length = 1043
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 321/730 (43%), Positives = 452/730 (61%), Gaps = 21/730 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AKS+AG LS+ + REG S YNKIYEFN + Q C M+MTSV+GH
Sbjct: 34 MKVLNVAEKNDAAKSIAGYLSRG-CFKRREGLSPYNKIYEFNSYLWNQNCEMVMTSVSGH 92
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK-DIKKTLEEEARRCQWLVLWLDCDR 126
L+ +F YRKW C P L+ AP+ K PE+ IKK+LE E ++C L++W DCDR
Sbjct: 93 LLSYEFVGAYRKWQGCHPLSLFDAPIIKQCPEENSIKIKKSLEREVQKCGALIIWTDCDR 152
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VC A+ ++ + RA+FS + +++A+QNL +PN+ +DAVD R E+D
Sbjct: 153 EGENIGFEIIQVCHAIKSNIRIYRAKFSEITQASVNRALQNLCEPNKAISDAVDVRSELD 212
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ LK ++ D +++SYG CQFPTLGFVVER+ I+ +SE +W
Sbjct: 213 LRIGAAFTRFQTLRLKQVFPRTLAD---MLISYGSCQFPTLGFVVERFLAIKRFKSEPYW 269
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I + + F W RG LF+ + ++C+++P ATV KV + K K+ P PL
Sbjct: 270 KIKVMDIRDNISVEFRWARGTLFEKLPCEVFLDICLEQPMATVKKVLSKPKNKWRPLPLD 329
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEK+ SR +S++ TM++AE LY G ISYPRTET+ F NL +V +Q+ +
Sbjct: 330 TIELEKQGSRKLHLSAKDTMRIAEKLYTQGLISYPRTETNIFPKELNLVPLVNQQVNNSA 389
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ+LL+ GL P G D+AHPPIHPTK++ G + + K+YE VVRHFL
Sbjct: 390 WGNFAQQLLE--KGL--TPRQGKKSDQAHPPIHPTKYTDG---LNGNEAKVYEFVVRHFL 442
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S AVG ET VEI+IAGE F+ +G I+ KNYL+VY +E+W I Y GQ F P
Sbjct: 443 ACLSCDAVGQETTVEIDIAGEKFAANGLQIIEKNYLNVYIYENWNDKEIHIYQEGQVFQP 502
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T PP LL+EADL+S MDK GIGTDAT +HI + R Y P
Sbjct: 503 TSIDMVEEKTCPPQLLTEADLISLMDKYGIGTDATHAEHIDTIKSRHYVGLIDGKHLIPG 562
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LVMGYD+MG+E+ KPNLR+ +E D+K + G KS DVL L++ + F +
Sbjct: 563 KLGIGLVMGYDNMGFEMSKPNLRAELEKDLKLICDGQKSPKDVLEIQLKKYRDLF-KLTI 621
Query: 607 KKVKLLE-AMGIFF-ERWSGG--EDQQAAGEVVRQCGICQESNMVLKKSRDG-NLMVGCL 661
++ L++ A+ + ER S E E++ +C C S+M LK + G +GC+
Sbjct: 622 ERANLIDIALADYLDERPSNTQVEISHPPQEIIFKCPKCN-SDMTLKDRKQGAGKYIGCM 680
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
+FP C N +W P ++ V C+ C G + ++FK ++ P + ++ CIGGC
Sbjct: 681 SFPTCNNVIWFPQTIEHVEVLDEVCSECI-GNIRKLKFKLLRNAFPI-YGTDYTTCIGGC 738
Query: 722 DETLRQLIEI 731
D +++ I
Sbjct: 739 DPMFNEVLNI 748
>gi|397476897|ref|XP_003809827.1| PREDICTED: DNA topoisomerase 3-alpha isoform 2 [Pan paniscus]
Length = 906
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 301/655 (45%), Positives = 427/655 (65%), Gaps = 14/655 (2%)
Query: 81 HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR 140
SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREGENI FE+I VC+
Sbjct: 11 QSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 70
Query: 141 AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML 200
AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLRIGA+FTRFQT+
Sbjct: 71 AVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLR 130
Query: 201 LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTAT 260
L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I +H +G
Sbjct: 131 LQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHRDGIVE 187
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+ELEK ASR R+
Sbjct: 188 FNWKRHRLFNHTACLVLYQLCMEDPIATVVEVRSKPKSKWRPQALDTVELEKLASRKLRI 247
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
+++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG +AQ +L+
Sbjct: 248 NAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGP 307
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC SQ A G ET V
Sbjct: 308 TPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLACCSQDAQGQETTV 361
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
EI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP
Sbjct: 362 EIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPK 421
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G LV GYD MG
Sbjct: 422 LLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMG 481
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
YE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K KL EA+ +F
Sbjct: 482 YEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFG 541
Query: 621 RWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV 676
+ Q+ A E +R+C C + +MVLK ++G + C+ FP+CR+AVWLP SV
Sbjct: 542 NGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECRSAVWLPDSV 600
Query: 677 SEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEI 731
EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+TLR+++++
Sbjct: 601 LEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTLREILDL 655
>gi|383854782|ref|XP_003702899.1| PREDICTED: DNA topoisomerase 3-alpha-like [Megachile rotundata]
Length = 1018
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 318/730 (43%), Positives = 440/730 (60%), Gaps = 19/730 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AK++AG LS+ R REG S YNKIYEF + Q C M+MTSV+GH
Sbjct: 1 MKVLNVAEKNDAAKNIAGYLSRGTSKR-REGLSPYNKIYEFKSQVWNQNCDMIMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK-DIKKTLEEEARRCQWLVLWLDCDR 126
L++ F YRKW SC P L+ APV K E IK+TLE E ++C L++W DCDR
Sbjct: 60 LLDFQFVSAYRKWQSCHPLSLFDAPVTKQCIEQTSLKIKETLEREVKKCNALIIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VC+AV ++ + RA+FS + I++A+QNL +PN+ DAVD R ++D
Sbjct: 120 EGENIGFEIIQVCQAVKPNISVYRAKFSEITQASINRALQNLCEPNKAVNDAVDVRMQLD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ L+ +++D +++SYG CQFPTLGFVVERY ++ + E +W
Sbjct: 180 LRIGAAFTRFQTLRLQKVFPRTLSD---MLISYGSCQFPTLGFVVERYLAVERFKPEPYW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I+ + + F W RG LF+ + +MC+++P ATV KV + K+ P PL
Sbjct: 237 KISVKDTRDNISVDFRWARGRLFEKLPCEVFLDMCLEQPNATVQKVTSKPTSKWRPVPLD 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+ELEK+ SR R++++ TMK+AE LY GFISYPRTET+ F NL V +Q+ +P
Sbjct: 297 TVELEKQGSRKLRLTAKQTMKIAEKLYTQGFISYPRTETNIFPKELNLVPFVNQQVNNPL 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ+LL+ GL +P G D+AHPPIHPTK + D K+YE VVRHFL
Sbjct: 357 WGNFAQQLLEK--GL--HPRQGKKSDQAHPPIHPTKCADN---LQGDEAKVYEFVVRHFL 409
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S A+G ET+VEI+IAGE F +G I+ KNYL+VY +E W I Y GQ F P
Sbjct: 410 ACLSDNAIGRETVVEIDIAGEKFVANGLQIIEKNYLNVYIYEKWSDKEIYAYQEGQVFRP 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T PP LL+EADL+S MDK GIGTDAT +HI + R Y P
Sbjct: 470 TSIDMIQEETSPPQLLTEADLISLMDKYGIGTDATHAEHIDTIKSRQYVGLMDGKHLIPG 529
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LVMGYD MG+E+ KP LR+ +E D+K V G KS A VL + + F A
Sbjct: 530 KLGIGLVMGYDSMGFEMSKPKLRAGLEKDLKLVCEGQKSPAAVLETQINTYREVFKVAME 589
Query: 607 KKVKLLEAMGIFF-ERWSGGEDQQAAG----EVVRQCGICQESNMVLKKSRDGNLMVGCL 661
+ + A+ + ER +D Q + + +C C ++ +K +D +GC+
Sbjct: 590 RANLIDSALADYLDERPVEAQDIQMSNPPQDTTIFKCPKCGLDMILKEKKQDSGKFIGCI 649
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
FP C N VW P +V V C+ C+ G + ++FK ++ P + ++ CIGGC
Sbjct: 650 NFPTCNNTVWFPQNVESVEVLDEICSQCS-GNRHKLKFKLSRNAFPL-YGTSYTTCIGGC 707
Query: 722 DETLRQLIEI 731
D + + I
Sbjct: 708 DPMFNEALNI 717
>gi|26325928|dbj|BAC26718.1| unnamed protein product [Mus musculus]
Length = 839
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 307/673 (45%), Positives = 428/673 (63%), Gaps = 25/673 (3%)
Query: 91 APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRR 150
A + K+ PE+ DIKKTLE E CQ LV+W DCDREGENI FE+I VC+AV +L + R
Sbjct: 1 AEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREGENIGFEIIHVCKAVKPNLRVLR 60
Query: 151 ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT 210
ARFS + + A +NL +P+Q +DAVD RQE+DLRIGA+FTRFQT+ L+ + +
Sbjct: 61 ARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLA 120
Query: 211 DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFD 270
+ ++SYG CQFPTLGFVVER+ IQA E F I +H ++GT F+W R LF+
Sbjct: 121 EQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRYRLFN 177
Query: 271 YTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAE 330
+T+ +++Y++C+++P ATV +VR + K K+ P L T+ELEK ASR R++++ TM++AE
Sbjct: 178 HTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAE 237
Query: 331 DLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
LY G+ISYPRTET+ F NL +V++Q P WG +AQ +L+ RN G
Sbjct: 238 KLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRN---GSK 294
Query: 391 DDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450
D+AHPPIHPTK++SG D +LYE +VRHFLAC SQ A G ET VEI+IA E F
Sbjct: 295 SDQAHPPIHPTKYTSG---LQGDDRRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFV 351
Query: 451 TSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSC 510
G +ILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP LL+EADL++
Sbjct: 352 AHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPSTVEMVDGETSPPQLLTEADLIAL 411
Query: 511 MDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRS 570
M+K GIGTDAT +HI+ + R Y ++ RF P ++G LV GYD MGYE+ KP+LR+
Sbjct: 412 MEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRA 471
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFF-ERWSGGEDQQ 629
+E+D+K + G K K VL +Q+ K F++A K KL EA+ + ER + ++
Sbjct: 472 ELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKAKKLDEALSQYLGERTEMAQQEE 531
Query: 630 ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
A E VR+C C + +MVLK + G + C+ FP+CR+AVW P SV EA+ + C
Sbjct: 532 IYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCMGFPECRSAVWFPDSVLEASRDNSVC 590
Query: 687 NSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPT 746
+ C P PVY ++ KF++ +PP + +GCIGGCDETL+++ + R P
Sbjct: 591 SVCQPPPVYRLKLKFKRGSLPPAMPLEFVGCIGGCDETLKEIFGL-----------RFPR 639
Query: 747 ASSNNGQQSNHRQ 759
A Q S H Q
Sbjct: 640 ALPRASQPSGHLQ 652
>gi|350420688|ref|XP_003492591.1| PREDICTED: DNA topoisomerase 3-alpha-like [Bombus impatiens]
Length = 1012
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 320/731 (43%), Positives = 446/731 (61%), Gaps = 21/731 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AKS+AG LS+ R REG S YNKIYEFN + Q C M+MTSV+GH
Sbjct: 1 MKVLNVAEKNDAAKSIAGYLSRGSSKR-REGLSTYNKIYEFNSYLWNQNCEMIMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK-DIKKTLEEEARRCQWLVLWLDCDR 126
L+ +F YRKW C P L+ APV K E+ IKKTLE E +RC L++W DCDR
Sbjct: 60 LLNYEFVGAYRKWQGCHPLSLFDAPVIKQCSEENSVKIKKTLEREVQRCGALIIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VCRA+ ++ + RA+FS + +++A+QNL +PN+ +DAVD R E+D
Sbjct: 120 EGENIGFEIIQVCRAIKPNIHIYRAKFSEITQASVNRALQNLCEPNKAISDAVDVRSELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ LK ++ D +++SYG CQFPTLGFVVER+ I+ +SE +W
Sbjct: 180 LRIGAAFTRFQTLRLKQVFPRTLAD---MLISYGSCQFPTLGFVVERFLAIKRFKSEPYW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I + + F W RG LF+ + ++C+++P ATV KV + K K+ P PL
Sbjct: 237 KIKVMDIRDNISVEFRWARGTLFEKLPCEVFLDICLEQPMATVKKVLSKPKNKWRPLPLD 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEK+ SR +S++ TM++AE LY G ISYPRTET+ F NL +V +Q+ +
Sbjct: 297 TIELEKQGSRKLHLSAKDTMRIAEKLYTQGLISYPRTETNIFPKELNLVPLVNQQVSNSA 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ+LL+ GL P G D+AHPPIHP K++ G + + K+YE VVRHFL
Sbjct: 357 WGNFAQQLLE--KGL--TPRQGKKSDQAHPPIHPIKYADG---LNGNEAKVYEFVVRHFL 409
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S AVG ET VEI+IAGE F+ +G I+ KNYL+VY +E W I Y GQ F P
Sbjct: 410 ACLSCDAVGQETTVEIDIAGEKFAANGLQIIEKNYLNVYIYEKWNDKEIHIYQEGQVFQP 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T PP LL+EADL+S MDK IGTDAT +HI + R Y P
Sbjct: 470 TSIDMVEEKTSPPQLLTEADLISLMDKYSIGTDATHAEHIDTIKSRHYVGLIDEKYLIPG 529
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LVMGYD+MG+E+ KPNLR+ +E D+K + KS DVL L++ + F +
Sbjct: 530 KLGIGLVMGYDNMGFEMSKPNLRAELEKDLKLICDEQKSPNDVLEIQLKKYRDLF-KLTV 588
Query: 607 KKVKLLE-AMGIFFERWSGG---EDQQAAGEVVRQCGICQESNMVLKKSRDGN-LMVGCL 661
+ L++ A+ + + E +V+ +C C S+M+LK + G +GC+
Sbjct: 589 EHANLIDIALADYLDEQPSNTQVEISHPPQKVIFKCPKCN-SDMILKDRKQGTGKYIGCM 647
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPG-FNVNHLGCIGG 720
+FP C N +WLP ++ V C+ C G + ++FK ++ P + ++ CIGG
Sbjct: 648 SFPTCNNVIWLPQNIKHVEVLDEVCSECI-GNIRKLKFKLLRNVFPIHVYGTDYTTCIGG 706
Query: 721 CDETLRQLIEI 731
CD + + I
Sbjct: 707 CDPMFNEALNI 717
>gi|325191454|emb|CCA26227.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2412
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 321/680 (47%), Positives = 423/680 (62%), Gaps = 31/680 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L R P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQGNKYER-PRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA-- 599
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQ++
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQVRPPR 623
Query: 600 CF----LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
CF +D+ + + +L+ + + CGIC +S M+L++ ++ +
Sbjct: 624 CFGTNLMDSFVDESDILKHTTNI---------TSSISRALSSCGIC-DSKMILQQVQNRS 673
Query: 656 LMVGCLAFPQCRNAVWLPGS 675
+ C C +LP +
Sbjct: 674 TQLTCHT---CCQTYFLPAA 690
>gi|325191453|emb|CCA26226.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2414
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 320/680 (47%), Positives = 423/680 (62%), Gaps = 31/680 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L + P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQG-NKYERPRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA-- 599
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQ++
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQVRPPR 623
Query: 600 CF----LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
CF +D+ + + +L+ + + CGIC +S M+L++ ++ +
Sbjct: 624 CFGTNLMDSFVDESDILKHTTNI---------TSSISRALSSCGIC-DSKMILQQVQNRS 673
Query: 656 LMVGCLAFPQCRNAVWLPGS 675
+ C C +LP +
Sbjct: 674 TQLTCHT---CCQTYFLPAA 690
>gi|325191456|emb|CCA26229.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2387
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 321/680 (47%), Positives = 423/680 (62%), Gaps = 31/680 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L R P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQGNKYER-PRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA-- 599
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQ++
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQVRPPR 623
Query: 600 CF----LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
CF +D+ + + +L+ + + CGIC +S M+L++ ++ +
Sbjct: 624 CFGTNLMDSFVDESDILKHTTNI---------TSSISRALSSCGIC-DSKMILQQVQNRS 673
Query: 656 LMVGCLAFPQCRNAVWLPGS 675
+ C C +LP +
Sbjct: 674 TQLTCHT---CCQTYFLPAA 690
>gi|325191460|emb|CCA26233.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 2385
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 321/680 (47%), Positives = 423/680 (62%), Gaps = 31/680 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ ILS + + R G+S+YN I+EF Y IR Q M+ TSV GHLM
Sbjct: 28 VLNVAEKPSVAKEISSILSSGRSNK-RSGQSKYNPIFEFPYEIRQQSVQMIFTSVIGHLM 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPED--KKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL+F YR WHSCDP +L+ AP+ K D +K I+KTL+ EAR+ QWLVLWLDCDRE
Sbjct: 87 ELNFTPNYRGWHSCDPYELFAAPIIKQTKNDPNQKKIEKTLQIEARKAQWLVLWLDCDRE 146
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV +C VN L + RA+FSALI +I AVQNL NQ + A DAR EIDL
Sbjct: 147 GENIAFEVKSICENVNSRLNIFRAKFSALIPHDIKNAVQNLGMLNQNLSLACDARSEIDL 206
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQTM L+ + DR V+SYGPCQFPTLGFVVER+ EI+ EEF+
Sbjct: 207 RIGAAFTRFQTMRLQQ-KFPGIQKDRG-VISYGPCQFPTLGFVVERHLEIENFVREEFYH 264
Query: 248 INCSHKSEE-----GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I H E + F+W R L+D S ++IYE+ +Q P AT+ V ++ K P
Sbjct: 265 IVVVHSPSEPLDKRASTKFTWKRQRLYDRLSCLVIYELVLQNPIATINFVEKKATWKRKP 324
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+KRASR+ R+SSE TMK AE+LY GFISYPRTET F GT+L +++
Sbjct: 325 LPLTTVELQKRASRWLRISSEETMKAAENLYNKGFISYPRTETSKFKEGTDLINLIKLHS 384
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H WG Y L R P +G DD+AHPPIHPTK + S K+YEL+V
Sbjct: 385 NHSSWGRYVTEELIQGNKYER-PRNGTTDDEAHPPIHPTKAAELNSLNEMAEKKVYELIV 443
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
HFLAC S+ A G +T V + + E F+TSG +I +NYL++YRFE W IP Y +
Sbjct: 444 LHFLACCSKDAKGFQTNVTMQMHMEEFTTSGLMITERNYLEIYRFEKWSNSSIPVYALRE 503
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANT 541
QFIP + ++SG T PP LL+EADL++ MD GIGTDAT+ +HIK +L R YA+K + N
Sbjct: 504 QFIPNCIRMESGETTPPSLLTEADLIAKMDSNGIGTDATIAEHIKTILKREYAVKINGNM 563
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA-- 599
F PT +G ALV Y MG++L KP LR+ ME+D K +S G K + C+QQ++
Sbjct: 564 HFKPTQLGLALVQAYVQMGFDLAKPRLRAAMEADCKAISSGYKDPKTAIEACMQQVRPPR 623
Query: 600 CF----LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
CF +D+ + + +L+ + + CGIC +S M+L++ ++ +
Sbjct: 624 CFGTNLMDSFVDESDILKHTTNI---------TSSISRALSSCGIC-DSKMILQQVQNRS 673
Query: 656 LMVGCLAFPQCRNAVWLPGS 675
+ C C +LP +
Sbjct: 674 TQLTCHT---CCQTYFLPAA 690
>gi|328786138|ref|XP_394050.4| PREDICTED: DNA topoisomerase 3-alpha-like [Apis mellifera]
Length = 1012
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 306/735 (41%), Positives = 448/735 (60%), Gaps = 29/735 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVLNVAEK AK++A LS+ R REG YNKI+EFN + + CHM+MTSV+GH
Sbjct: 1 MNVLNVAEKNDAAKNIAAYLSRGTYKR-REGLWLYNKIFEFNSYLWNKNCHMIMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK-DIKKTLEEEARRCQWLVLWLDCDR 126
L+ +F YRKW SC P L+ APV K ++ IKKTLE+E ++C L++W DCDR
Sbjct: 60 LLNCEFVGIYRKWQSCHPLSLFDAPVVKQCSQESSIKIKKTLEKEVQKCNALIIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VCRA+ ++ + RA+FS + +++++QNL +P++ +DAVD R E+D
Sbjct: 120 EGENIGFEIIQVCRAIKPNIRIYRAKFSEITQTSVNRSLQNLCEPDKAISDAVDVRSELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ L+ ++ D +++SYG CQFPTLGFVVER+ I+ + E +W
Sbjct: 180 LRIGAAFTRFQTLRLRKVFPTTLAD---MLISYGSCQFPTLGFVVERFLAIEEFKIEPYW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I + + F W RG LF+ I ++C+++P ATV K+ + K+ P PL
Sbjct: 237 KIKVMDIRDNISVEFKWERGKLFEKLPCEIFLDICLEQPNATVQKISSKPTSKWRPLPLD 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEK+ SR ++++ M++AE LY G ISYPRTET+ F NL +V +QI +P
Sbjct: 297 TIELEKQGSRKLNLNAKEIMRIAEKLYTQGLISYPRTETNIFPKELNLISLVNQQINNPA 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ+LL+ NP G D+AHPPIHP K+ + + K+YE VVRHFL
Sbjct: 357 WGNFAQQLLEKGV----NPRKGKKSDQAHPPIHPIKYCDN---LNGNEAKVYEFVVRHFL 409
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S A+G + IVEI+IAGE F+ +G ++ KNYLDVY +E W I Y GQ F P
Sbjct: 410 ACLSSNAIGHQVIVEIDIAGEKFNANGLQVIEKNYLDVYIYEKWNEQKIHNYREGQVFKP 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T PP LL+EADL++ MDK GIGTDAT +HI + R Y P
Sbjct: 470 TSIEMIEEKTSPPQLLTEADLITLMDKHGIGTDATHAEHIDTIKSRQYVGLVDEKYLIPG 529
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LV+GYD+MG+++ KP LR+ +E D+K + K+ +VL N + + + F +
Sbjct: 530 KLGIGLVLGYDNMGFQMSKPGLRAELERDLKLICEQRKNAKEVLENQINKYRDLF-KISM 588
Query: 607 KKVKLLE-AMGIFF--------ERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDG-NL 656
++ L++ A+ +F E + Q A +CG+ +M LK + G
Sbjct: 589 ERANLIDNALADYFDEQPTKIQELENNFPSQDIAIFKCPKCGL----DMTLKDRKQGMGK 644
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLG 716
+GC+ +P C N +W P + + +T N C+ C PG ++ ++FK R++ P + ++
Sbjct: 645 YIGCIGYPTCNNVIWFPQYIEDVEITDNICSRC-PGNIHELKFKLRKNAYPI-YGTDYKT 702
Query: 717 CIGGCDETLRQLIEI 731
CIGGCD T +L+ I
Sbjct: 703 CIGGCDPTFNELLNI 717
>gi|166240582|ref|XP_643754.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
gi|74818660|sp|Q8T2T7.1|TOP3_DICDI RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|165988670|gb|EAL69909.2| DNA topoisomerase III [Dictyostelium discoideum AX4]
Length = 828
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 315/712 (44%), Positives = 440/712 (61%), Gaps = 41/712 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTGHL 68
+LNVAEKPS AK +A ILS N+ +REG S+YNK+++F Y+I C M TSVTGHL
Sbjct: 5 ILNVAEKPSAAKEIAAILS-NKRATVREGFSKYNKLWDFKYNILNFNDCEMTFTSVTGHL 63
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
ME+D E+++ W SCDP L+ AP+RK VP DK+ +KKTLE E ++ L+LWLDCDREG
Sbjct: 64 MEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREIKKADILILWLDCDREG 123
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENIAFEV+EVC+ RA FSA+I REI +A +NL PN+ + AVD R EIDLR
Sbjct: 124 ENIAFEVLEVCKNAKKKFEFYRAHFSAIIPREIDRACKNLAKPNEKDSIAVDTRMEIDLR 183
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDR---------------------NLVLSYGPCQFPTL 227
IGA+FTRFQT+ LK F I S +D++ ++SYGPCQFPTL
Sbjct: 184 IGAAFTRFQTLYLKKFKIISNSDNQPKTTTPANGNILNNSNNNSSGKEIISYGPCQFPTL 243
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEGTA------TFSWMRGHLFDYTSAVIIYEMC 281
GFVVERY+ I + E+FW ++ H+ + ++ TFSW R LFDYT+A I+YE C
Sbjct: 244 GFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLFDYTAAFILYEKC 303
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
+ ATV V +E +Y P PL+TIEL+K AS+ R+SS TM+ AE+LY G ISYP
Sbjct: 304 LDNTEATVVDVTSKES-RYRPVPLTTIELQKAASKKLRISSVQTMQYAEELYTKGLISYP 362
Query: 342 RTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT 401
RTETDSF +GT+L G++ Q +P+WG YA RL+++ ++ P SG ++D +HPPIHPT
Sbjct: 363 RTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVY--PKSGKNNDNSHPPIHPT 420
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY 461
++G S + K+Y+ + R FLAC S+ +V A T V I+I GE FS +G ++L Y
Sbjct: 421 SSATG---LSGNLKKIYDFITRRFLACCSEESVFANTTVTIDIQGERFSETGTMVLKLGY 477
Query: 462 LDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDAT 521
L+VY F+ +IPTY G++F P + L G T P ++EA+LL+ MD IGTDAT
Sbjct: 478 LEVYPFDKRNDKLIPTYQKGERFTPKRIDLTKGTTVAPHYITEAELLTAMDNNKIGTDAT 537
Query: 522 MHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSV 581
M HI+ + DRFY K+ + +F P+N+G +LV Y+ MG+E KPNLR+ +E+D+ ++S
Sbjct: 538 MATHIQTIQDRFYVKKNESNQFVPSNLGVSLVASYELMGFEFSKPNLRAAIEADVDKISR 597
Query: 582 GNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERW--SGGEDQQAAGEVVRQCG 639
G K+K +VL + +++ K + A + ++E GGE + + R CG
Sbjct: 598 GQKTKQEVLLSTIEKYKQLYQLANQNINCFDRSFREYYEPADPKGGEFRVLVSQFSR-CG 656
Query: 640 ICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP--GSVSEAAVTTNTCNSC 689
C M K ++ L PQC + LP G +S+ + +C
Sbjct: 657 KCN-GKMQYKSDQNPEAPKRILFCPQCIDTFDLPKNGDISQLVTSMGVPQNC 707
>gi|328871269|gb|EGG19640.1| DNA topoisomerase III [Dictyostelium fasciculatum]
Length = 812
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 311/684 (45%), Positives = 433/684 (63%), Gaps = 25/684 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPS A+ ++ +L+ + R R G S+YN I+EF Y+I G M+ TSV GHLM
Sbjct: 29 VLNVAEKPSAAEEISQLLAGTRP-RKRPGLSKYNPIWEFKYNILGGNADMVFTSVLGHLM 87
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHV-PEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ +ERY W+SC+P +L+H VRK++ +D +++ KT++ EAR+C LVLWLDCDREG
Sbjct: 88 NTEVEERYIPWYSCEPVELFHCGVRKYIQSDDNQNLFKTIQREARQCDTLVLWLDCDREG 147
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENIAFEVI+ N +L++ RARFS++I +E+ +A NLV PN+ + AVD R EIDLR
Sbjct: 148 ENIAFEVIDCAVKANRNLMIYRARFSSIIPQEVKRACANLVRPNENDSIAVDTRIEIDLR 207
Query: 189 IGASFTRFQTMLLK-NFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
+GA+FTRFQT+ L+ F + D+ +SYGPCQFPTLGFVVERY I+ E+FW+
Sbjct: 208 LGAAFTRFQTLYLRGKFDLTPGNDEDKQPISYGPCQFPTLGFVVERYLRIENFIPEDFWS 267
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+N H EE T F W R LFD+ A I+YE C+ P ATV ++++ K
Sbjct: 268 MNVKHSKEELTVNFGWKRKRLFDHAPAFILYEKCLDNPLATVIDIQKKNHNK-------- 319
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
L+K AS R+SS+ TMK+AE+LY GFISYPRTET F GT+ G++ Q G P W
Sbjct: 320 --LQKSASSKLRISSDRTMKIAEELYNKGFISYPRTETSQFIDGTDFQGLIGLQTGDPQW 377
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQD--HYKLYELVVRHF 425
G YA RLL+ G ++ P G +D +HPPIHPT F + ++D +LYE +VRHF
Sbjct: 378 GQYATRLLN---GEFKRPNDGRTNDHSHPPIHPTNFLPPGAAGAKDPKARELYEFIVRHF 434
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC S ++ A+T V I++AGE FS SG +I+ + YL+VY++E +IPTY G+QF
Sbjct: 435 LACCSPESIIAKTTVSIDVAGEKFSESGSMIIRRGYLEVYKYEKRNDKIIPTYEVGEQFT 494
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT + L+SG T P LSE +LLS MD IGTDATM HI+K+++R Y IKDA+ F P
Sbjct: 495 PTDIKLESGRTVSPRPLSEPELLSAMDSNQIGTDATMAQHIQKIIERGYVIKDADQLFVP 554
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
TN+G+AL++GYD MG+E KP LR+ +E+D++++ +G ++K VL + +++ K F+ A+
Sbjct: 555 TNLGKALIVGYDSMGFEFSKPALRASIEADIQKIGLGQRTKEQVLRDTIEKYKTLFIQAQ 614
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
+ L A F S G+ Q +CG C M LKK+ ++ C
Sbjct: 615 NQTQMLDVAFSKHFA--SKGQTYQTLKANFSKCGKCNNL-MDLKKTNGDRKILNCST--- 668
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSC 689
C + LP E V +TC C
Sbjct: 669 CNTSYNLPQK-GEFIVNAHTCPLC 691
>gi|380021980|ref|XP_003694833.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
[Apis florea]
Length = 1011
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 306/732 (41%), Positives = 451/732 (61%), Gaps = 23/732 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVLNVAEK AK++A LS+ R REG YNKI+EFN + + CHM+MTSV+GH
Sbjct: 1 MNVLNVAEKNDAAKNIAAYLSRGAYKR-REGLWLYNKIFEFNSYLWNKNCHMIMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK-DIKKTLEEEARRCQWLVLWLDCDR 126
L+ +F YRKW SC P L+ APV K ++ IKKTLE+E ++C L++W DCDR
Sbjct: 60 LLNCEFVGIYRKWQSCHPLSLFDAPVIKQCSQESSIKIKKTLEKEVQKCNALIIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VCRA+ ++ + RA+FS + I++++QNL +P++ +DAVD R E+D
Sbjct: 120 EGENIGFEIIQVCRAIKPNIRIYRAKFSEITQTSINRSLQNLCEPDKAVSDAVDVRSELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ L+ ++ D +++SYG CQFPTLGFVVER+ I+ + E W
Sbjct: 180 LRIGAAFTRFQTLRLRKVFPTTLAD---MLISYGSCQFPTLGFVVERFLAIEEFKIEPCW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I + + F W RG LF+ I ++C+++P ATV KV + K+ P PL
Sbjct: 237 KIKVMDIRDNISVEFKWARGKLFEKLPCEIFLDICLEQPNATVQKVLSKPTSKWRPLPLD 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEK+ R ++++ TM++AE LY G ISYPRTET+ F NL +V +Q+ +
Sbjct: 297 TIELEKQGLRKLNLNAKETMRIAEKLYTQGLISYPRTETNIFPKELNLISLVNQQVNNSA 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ+LL+ NP G D+AHPPIHP K+ + + K+YE VVRHFL
Sbjct: 357 WGNFAQQLLEKGV----NPRKGKKSDQAHPPIHPIKYCDT---LNGNEAKVYEFVVRHFL 409
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S A+G + IVEI+IAGE F+ +G ++ KNYLDVY +E W I Y GQ F P
Sbjct: 410 ACLSSDAIGHQIIVEIDIAGEKFNANGLQVIEKNYLDVYIYEKWNEQEIHNYREGQVFKP 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T PP LL+EADL++ MDK GIGTDAT +HI + R Y P
Sbjct: 470 TSIEMVEEETCPPQLLTEADLITLMDKHGIGTDATHAEHIDTIKSRQYVGLMDEKHLIPG 529
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LV+GYD+MG+++ KP LR+ +E D+K + KS +VL N + + + F +
Sbjct: 530 KLGIGLVLGYDNMGFQMSKPGLRAELEKDLKLICERRKSAKEVLENQINKYRDLF-KISM 588
Query: 607 KKVKLLE-AMGIFFE----RWSGGEDQQAAGEV-VRQCGICQESNMVLKKSRDG-NLMVG 659
++ L++ A+ +F+ + E+ + ++ + +C C +M LK + G +G
Sbjct: 589 ERANLIDNALADYFDEQPMKIQELENNFPSQDIAIFKCPKCG-XDMTLKDRKQGMGKYIG 647
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C+ +P C N +WLP + + +T N C+ C PG ++ ++FK R++ P + ++ CIG
Sbjct: 648 CIGYPTCNNVIWLPEYIEDVEITDNICSRC-PGNIHELKFKLRKNAYPI-YGTDYRTCIG 705
Query: 720 GCDETLRQLIEI 731
GCD T +L++I
Sbjct: 706 GCDPTFNELLKI 717
>gi|322801677|gb|EFZ22300.1| hypothetical protein SINV_07705 [Solenopsis invicta]
Length = 1052
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 314/734 (42%), Positives = 444/734 (60%), Gaps = 28/734 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AK++AG LS N R REG S YNKI+EFN + GQ C M+MTSV+GH
Sbjct: 1 MKVLNVAEKHDAAKNIAGYLS-NGASRKREGLSVYNKIFEFNVQLWGQNCQMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKH-VPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
L+ DF YRKW C P L+ APV K + E+ + IK+TLE E R C L++W DCDR
Sbjct: 60 LLGYDFTGAYRKWQGCSPLSLFDAPVSKECLGENYEKIKRTLEREIRSCNTLIIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VC+AV ++ + RA+FS + + I +A+Q L +P++ +DAVD R E+D
Sbjct: 120 EGENIGFEIIQVCKAVKSNIRVYRAKFSEITKQSIERALQTLGEPDKAISDAVDVRSELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ L+ +++ NL++SYG CQFPTLGFVVER+ I +SE +W
Sbjct: 180 LRIGAAFTRFQTLRLQKIFPNTLG---NLLISYGSCQFPTLGFVVERFLAIDRFKSEPYW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + + F W R LF+ I +MC++ P ATV K+ + K K+ P PL
Sbjct: 237 KLRIIDDRDGISVEFRWARVRLFEKMPCQIFLDMCLERPDATVEKITCKPKSKWRPLPLD 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEK+ SR R++++ TM++AE LY GFISYPRTETD F NL +VQ+Q+ + D
Sbjct: 297 TIELEKQGSRKLRLNAKETMRIAERLYTQGFISYPRTETDIFPKEMNLTSLVQQQVPNRD 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +A+ LL+ P G D+AHPPIHPTK++ + K+YE VVRHFL
Sbjct: 357 WGDFARNLLESGV----TPRQGKKSDQAHPPIHPTKYTDS---LQGNEAKVYEFVVRHFL 409
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S+ A G ET V+INIA E F+ +G I+AKNYL+VY +E W I +Y Q F P
Sbjct: 410 ACLSKNAEGRETTVDINIANERFTANGLEIIAKNYLEVYIYEKWNNKQIHSYQQRQVFRP 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T PP LL+EA+L++ MDK GIGTDAT +HI + R Y F P
Sbjct: 470 TSIEMIEEKTSPPKLLTEAELIALMDKHGIGTDATHAEHIDTIKSRQYVGLTNTQHFMPG 529
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LVMGYD+MG+++ KP+LR+ +E D++ + K+ +VL N + + + F A
Sbjct: 530 KLGIGLVMGYDNMGFQMSKPHLRADLEKDLQLICQRQKNPNEVLQNQINKYREVFEVAIE 589
Query: 607 KKVKLLEAMGIFF-ERWSGGED-------QQAAGEVVRQCGICQESNMVLKKSRD-GNLM 657
+ + E++ + ER E QQ A +CG SNM L+ R G
Sbjct: 590 RANLIDESLAQYLDERPLQTEQIAPLLPPQQVAIFKCPKCG----SNMTLQNRRQGGGKF 645
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGC 717
+ C+ +P C+N VW P ++ + V TC CT + ++F ++ IP + ++ C
Sbjct: 646 ISCMGYPTCKNVVWFPEAIKDIEVLNETCTQCTEN-MRKLKFTLVRNVIPL-YGTSYTTC 703
Query: 718 IGGCDETLRQLIEI 731
I CD +++ I
Sbjct: 704 I-SCDTQFNEMLNI 716
>gi|157116652|ref|XP_001658595.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108876378|gb|EAT40603.1| AAEL007683-PA [Aedes aegypti]
Length = 1021
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 332/777 (42%), Positives = 455/777 (58%), Gaps = 44/777 (5%)
Query: 3 GGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMT 62
G + LNVAEK AK++AG+LS+ R REG S YNKIYEF+Y+IRGQP M+MT
Sbjct: 20 GNAAVMKYLNVAEKNDAAKNIAGLLSRGSSQR-REGYSPYNKIYEFSYNIRGQPVQMVMT 78
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV+GHL+ +F +R WHSC+P L+ APVRK E+ IK+TLE E R CQ LV+W
Sbjct: 79 SVSGHLLNYEFLPSFRGWHSCNPEQLFDAPVRKSCTENMGKIKQTLEREVRGCQTLVIWT 138
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGENI FE+IEVCRA+ + + RA+FS + + +AV+NL P++ ++AV+ R
Sbjct: 139 DCDREGENIGFEIIEVCRAIKPGIRVLRAKFSEITAASVKRAVENLAAPDELQSEAVNVR 198
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTRFQT+ L+N + ++ ++SYG CQ PTLGFV RY EI+
Sbjct: 199 SELDLRIGAAFTRFQTLRLQNVFPAKIVNN---LVSYGSCQIPTLGFVAHRYKEIEKFIP 255
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+EFW I +H +E T F+W R LFD +C EP + V + K K+ P
Sbjct: 256 QEFWKIKLNHTIDELTVEFNWARNRLFDKQCCEAYLMLCQSEPLVKIVSVTNKPKNKWRP 315
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL T+ELEK SR +++++ TM +AE LY G ISYPRTET+ F++ L +V+ Q
Sbjct: 316 TPLDTVELEKLGSRKLKINAKQTMTIAEKLYTQGIISYPRTETNMFTNDMKLAPLVEMQT 375
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+P+WG +AQ++L NP +G D+AHPPIHPTK+ S + D ++YELVV
Sbjct: 376 DNPEWGGFAQKVLQWGP----NPRNGKKSDQAHPPIHPTKYVSN---LTGDEKRIYELVV 428
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLAC+S+ AVG+ET+V +A E F+ SG IL +NYL+VY ++ W I Y G
Sbjct: 429 RHFLACISKDAVGSETVVNAVLADEEFTASGLCILERNYLEVYPYDRWNSREIHPYQVGH 488
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
F PT L+L G T P +L+EADL++ M+K GIGTDAT +HI + +R Y I +A R
Sbjct: 489 TFEPTELSLHQGSTTAPNMLTEADLIALMEKHGIGTDATHAEHINTIKERGY-IGEAEGR 547
Query: 543 F-APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+ P +G LV GY+ M L +P LR+ +E+D+K + G K VLA +Q+ K +
Sbjct: 548 YLVPGTLGMGLVEGYEAMELTLAQPELRAGLEADLKLICEGRKDPKVVLAEQIQKYKEAY 607
Query: 602 LDARLKKVKLLEAMGIFF-ERWSGGEDQQAAG------EVVRQCGICQESNMVLKKSRDG 654
K L +AM E Q A + V +C C + M LKK +DG
Sbjct: 608 RVITQKARALDQAMSQRLNEAPKDAPTNQFASTGNNPLQEVCKCPKCSQM-MALKKKKDG 666
Query: 655 N-LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVN 713
N +GCL FP CRN VW ++ EA+ T C C G + KF+Q G +N
Sbjct: 667 NSYYLGCLGFPDCRNTVWFDENIKEASGTDEICPRCG-GSNKKMTIKFKQIRF-YGL-LN 723
Query: 714 HLG------CIGGCDETLRQLIEI--------CGTGSR----IPARGRGPTASSNNG 752
H+ CI CD R+++ I +G R IPARG PT ++ G
Sbjct: 724 HMSADAYKTCI-VCDNKFREVLGIEDSLVKQFRSSGIRADVTIPARGNAPTGNTTRG 779
>gi|405967245|gb|EKC32429.1| DNA topoisomerase 3-alpha [Crassostrea gigas]
Length = 1950
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 305/721 (42%), Positives = 432/721 (59%), Gaps = 47/721 (6%)
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
M+MTSV+GHL+E+DF +Y KW+SC P L+ P+ K P+ DIK+TLE E R+ Q+L
Sbjct: 1 MMMTSVSGHLLEMDFVGQYNKWYSCSPLSLFDLPIEKKCPDKFADIKRTLEREVRQSQYL 60
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA 178
++W DCDREGENI EVI+VC+AVN ++ + RARFS + + + +A NLV P+Q +DA
Sbjct: 61 IIWTDCDREGENIGHEVIQVCKAVNPNIPVYRARFSEITPQAVARACSNLVPPDQRTSDA 120
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
VD RQE+DLRIGA+FTRFQTM L+ +++ D ++SYG CQFPTLGFVVERY ++Q
Sbjct: 121 VDVRQELDLRIGAAFTRFQTMRLQKIFPEALADK---LISYGSCQFPTLGFVVERYKQVQ 177
Query: 239 AHESEEFWTINCSHK-SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
A E FW I +H EE FSW R LFD+ + +I+YE CV+ P ATV +V+ + K
Sbjct: 178 AFIPEPFWKIKVTHMFDEETKCEFSWKRNRLFDHNACLILYEQCVENPQATVMEVKCKPK 237
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K+ P PL T+E+EK ASR R+S++ TM++AE+LY GFISYPRTET+ F +L +
Sbjct: 238 SKWRPTPLDTVEMEKLASRKLRLSAKETMRIAENLYTKGFISYPRTETNIFPKDLDLAAL 297
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
VQEQ P+WG +A +L NP +G D+AHPPIHP K++ + + +L
Sbjct: 298 VQEQSRDPNWGGFASGILQDRP----NPRNGNKSDQAHPPIHPIKYT---ATLQGNDARL 350
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YE +VRHFLA S+ A G ET V INIA E+F+ G +I+A+NYLDVY ++ W IP
Sbjct: 351 YEFIVRHFLATCSKDAQGQETTVTINIADEMFTAQGLMIIARNYLDVYPYDRWNAKTIPV 410
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
Y G F P ++ + T PPPLL+EADL++ M+K GIGTDAT +HI+ + R Y
Sbjct: 411 YQEGDSFQPNSIDMLFSETSPPPLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYIGV 470
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
+ + RF P +G LV GYD MGYE+ KP+LRS +E+D+K + G K K VL + +
Sbjct: 471 NNDGRFVPGQLGMGLVEGYDAMGYEMSKPHLRSELEADLKRICEGKKDKNVVLTQQVAKY 530
Query: 598 KACFLDARLKKVKLLEAMGIFF----ERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRD 653
+ F A + +K+ +A+ + E G E ++ + V++C C M LK +
Sbjct: 531 RDVFKVACEQALKIDQALSQYLGEAKEIPVGEELERLSVVPVKKCSNCG-LEMTLKTKKS 589
Query: 654 GNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVN 713
G +GC +P CR+A+W P V +A+V+ +V
Sbjct: 590 GGFYIGCQGYPSCRSAIWFPDFVLDASVS----------------------------DVK 621
Query: 714 HLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSS 773
+ GC+ GCDE L + ++I + P + PT G QR + Q + +
Sbjct: 622 YAGCVAGCDELLAESLQINHSA---PPSSQRPTQQMMGGHTRQESQRVPLVTVQPFNRQT 678
Query: 774 D 774
D
Sbjct: 679 D 679
>gi|290980003|ref|XP_002672722.1| predicted protein [Naegleria gruberi]
gi|284086301|gb|EFC39978.1| predicted protein [Naegleria gruberi]
Length = 1015
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 335/711 (47%), Positives = 439/711 (61%), Gaps = 33/711 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKP AK +A ILS + R REG+S++NKI+EF Y + G M +TSV GHLM
Sbjct: 24 VLCVAEKPEAAKQIATILSAGKFQR-REGKSKFNKIFEFEYRMNGVVVTMSVTSVLGHLM 82
Query: 70 ELDFDERYRKWHSCDPADLYH--APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
EL FD + + W SCDP L PV ++VPE +I++ LE+EAR L+LWLDCDRE
Sbjct: 83 ELGFDPKLKSWTSCDPITLMDPATPVFRNVPEKNLEIQQNLEQEARYATKLLLWLDCDRE 142
Query: 128 GENIAFEVIEVCRAVNCHLVLR-----RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENIAFEVIEVC+ VN L + RARFS I++A++NL PN + AVD R
Sbjct: 143 GENIAFEVIEVCKKVNRSLSIENDSILRARFSEFTAAAINRAIRNLERPNVLDSMAVDTR 202
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIGASFTRFQ++ LK +T D +SYGPCQFPTLGFVV+R I+ ES
Sbjct: 203 QELDLRIGASFTRFQSLRLKK-KFQGITAD---YISYGPCQFPTLGFVVKRDLIIKNFES 258
Query: 243 EEFWTINCSHK-SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E FWT+NC+H EEG A F W RG LFD + ++IYE+CV+ A V V ++ + KY
Sbjct: 259 ESFWTLNCTHDMGEEGKAQFLWKRGRLFDQLTCLVIYELCVEAQRARVVNVEKKRRYKYR 318
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSS--GTNLHGIVQ 359
P PL+TIEL+K AS+ +M S TMKVAE LY GFISYPRTET++++ +L +V
Sbjct: 319 PDPLNTIELQKLASQKLKMGSHETMKVAESLYNKGFISYPRTETNNYNQFQDDDLKRLVN 378
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK--FSSGESRWSQDHYKL 417
E +P WG YA LL+ G ++ P SG DDKAHPPIHP K +S +S+ L
Sbjct: 379 EHTSNPTWGGYASDLLN---GGYQKPPSGKQDDKAHPPIHPLKGDCNSNDSK----EQAL 431
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YEL+ RHFLAC S+ AVGAET V I+IA E F+ SG ++ KN+L++++++ W IP
Sbjct: 432 YELIARHFLACCSKDAVGAETKVIISIANEEFTCSGLMVEQKNFLEIWKYDRWSDKSIPV 491
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ GQ+FIPT+L +D G TRPPP LSE+DL+S MD GIGTDAT+ HIK + +R Y IK
Sbjct: 492 FNAGQEFIPTSLLMDHGETRPPPHLSESDLISAMDSNGIGTDATVAQHIKTIQERGYVIK 551
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
N RF TN+G AL+ GYD +GYEL PNLRS ME DM +S G +SK V+ L
Sbjct: 552 KGN-RFEATNLGMALLQGYDLIGYELSTPNLRSKMEKDMLSISKGEQSKEAVIHQSLSMY 610
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
K ++ L +A+ F G+ + R +C N + K +DGN
Sbjct: 611 KHVYIQICKSAYLLDKAVQQHFPTLGEGQSRVLG----RGFSLCSCKNPMDLKEQDGNNF 666
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPP 708
+ C C ++ LP S SE + C C + +I K +++ P
Sbjct: 667 LHC---KNCSDSYPLP-SKSEYESIEDVCPICNFQILNIITQKNTSYKLCP 713
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAV 681
++G + + VVR+C C + +V ++ D +L +GC FP C++AVWLP S+ +A +
Sbjct: 740 FTGCKYSRKKDAVVRKCQKCSNNLVVRQRKNDTSLYIGCKGFPNCKSAVWLPKSIEKADL 799
Query: 682 TTNTCNSCT--PGPVYLIQFKFRQHE-IPPGFNVNHLGCIGGCDETLRQLIEI 731
TT CN C+ VY ++F F Q +PPG N H C+ CD+ + I
Sbjct: 800 TTEKCNRCSTRSDTVYRLKFTFAQGTLLPPGVNREHTTCV-FCDQDFDEAFNI 851
>gi|195119033|ref|XP_002004036.1| GI18230 [Drosophila mojavensis]
gi|193914611|gb|EDW13478.1| GI18230 [Drosophila mojavensis]
Length = 1279
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 318/733 (43%), Positives = 426/733 (58%), Gaps = 22/733 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS R REG S YNK+Y+F +RG+ M+MTSV+GH
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSNGAAQR-REGYSVYNKVYDFEAPVRGRNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LMEL+F + YR W + DP L+ AP+RK V E+ IK+TLE E R CQ L++W DCDRE
Sbjct: 60 LMELEFLQSYRNWRNVDPRSLFDAPIRKTVSENFLPIKRTLEREVRSCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+IEVCRA+ +L + RA FS + + +A+Q L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIIEVCRAIKPNLTVHRATFSEITSVAVRRALQQLGLPDKRQSDAVDVRSELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQTM L+ ++ D ++SYG CQ PTLGFV ERY EI+A SE FW
Sbjct: 180 RTGAAITRFQTMRLQRLFPANIADK---LISYGSCQIPTLGFVAERYKEIEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
I H E+ T F+W R LFD + +C+ EP ATV V + K K+ P PL
Sbjct: 237 IRVLHTIEDLTVEFNWARNRLFDKEACENYLLLCLAEPEPRATVESVVVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V++Q GH
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFISYPRTETNQFSKEFELTPLVEQQTGHE 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +AQR+L+ NP +G D+AHPPIHPTK S + ++YELVVRHF
Sbjct: 357 AWGAFAQRVLEWGP----NPRNGNKSDQAHPPIHPTKLVSN---LQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ETIV I+IAGE FS SG VI +NYLDVY ++ W I Y GQ+F
Sbjct: 410 LACVSKDAVGSETIVSIDIAGEKFSASGLVIHERNYLDVYVYDKWSAKQIHNYQQGQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT + L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y P
Sbjct: 470 PTEIMLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVVEKGALVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
IG L GYD M L KP LR+ E+D+K + +G K VL + + K +
Sbjct: 530 GVIGMGLYEGYDAMELTLAKPLLRAEFEADLKRICLGEKDPKLVLREQIAKYKTAYQQIM 589
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQ---CGICQESNMVLK-KSRDGNLMVGCL 661
K + + + + +V + C C+++ + LK K + +GCL
Sbjct: 590 DKITAMDDKIAQRINETPTAATANPSSGLVHELFPCPKCEQAPLALKPKKNQTSFFIGCL 649
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVN---HLGCI 718
FP C+N +WLP E V C +C G +++FK FN + C+
Sbjct: 650 NFPDCKNVIWLPEECKELTVLDECCPTCGDG-YKMLKFKLNTAYYRGLFNAPYGWYKNCL 708
Query: 719 GGCDETLRQLIEI 731
CDE R I
Sbjct: 709 -RCDELFRSTFNI 720
>gi|307201913|gb|EFN81542.1| DNA topoisomerase 3-alpha [Harpegnathos saltator]
Length = 1049
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 324/782 (41%), Positives = 461/782 (58%), Gaps = 24/782 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL+VAEK AK++A LS+ R REG S YNKI+EFN + GQ C M+MTSV+GH
Sbjct: 1 MKVLSVAEKHDAAKNIAAFLSRGTS-RKREGLSVYNKIFEFNVQLWGQNCQMIMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK-DIKKTLEEEARRCQWLVLWLDCDR 126
L+ +F YRKW C P L+ APV K ++ IKKTLE E R C L++W DCDR
Sbjct: 60 LLGFEFTGSYRKWQGCHPLSLFDAPVFKQCSDESYIKIKKTLEREIRSCNALIIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VC+ + ++ + RA+FS + + I +A+Q L +P++ +DAVD R E+D
Sbjct: 120 EGENIGFEIIQVCQVIKPNIRIYRAKFSEITKQSIERALQTLGEPDKAMSDAVDVRSELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ L+ D+++ N+++SYG CQFPTLGFVVER+ I +SE +W
Sbjct: 180 LRIGAAFTRFQTLRLQKVFPDTLS---NMLISYGSCQFPTLGFVVERFLAIDRFKSEPYW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I + + F W R LF+ I +MC++ P ATV KV + K K+ P PL
Sbjct: 237 KIKVIDEHDGIFVEFRWARVRLFEKMPCQIFLDMCLERPEATVEKVTCKPKSKWRPLPLD 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEK+ SR R++++ TM++AE LY G ISYPRTET+ F NL +V++Q+ +
Sbjct: 297 TIELEKQGSRKLRLNAKETMRIAERLYTQGLISYPRTETNIFPKELNLAALVEQQVNNQA 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +A+ LL+ +G+ P G D+AHPPIHPTK++ + K+YE VVRHFL
Sbjct: 357 WGNFARGLLE--SGII--PRQGKKSDQAHPPIHPTKYTDN---LQGNEAKVYEFVVRHFL 409
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
ACVS+ A G ET VEI+IAGE F+T+G +LAKNYLDVY +E W I +Y Q F P
Sbjct: 410 ACVSKNAEGQETTVEIDIAGEKFTTNGLEVLAKNYLDVYIYEKWNDKEIHSYQPRQVFRP 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T PP LL+EA+L++ MDK GIGTDAT +HI + R Y F P
Sbjct: 470 TSIDMVEEKTSPPNLLTEAELIALMDKHGIGTDATHAEHIDTIKSRQYVGLTDTQHFMPG 529
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LVMGYD+MG+++ KPNLR+ +E D++ + K +VL + + + + F A
Sbjct: 530 KLGIGLVMGYDNMGFQMSKPNLRADLEKDLQLICQRQKDPNEVLQSQINKYREVFKIAIE 589
Query: 607 KKVKLLEAMGIFFER--WSGGEDQQAAGEVVR--QCGICQESNMVLKKSRDG-NLMVGCL 661
+ + +A+ + + GE E V +C C SNM+LK + G + C
Sbjct: 590 RANLIDDALARYLDERPIENGETLSRFVEDVSIFKCPRCG-SNMILKNRKQGRGKYISCA 648
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
+P C N +WL ++ + V + TCN CT + ++FK ++ +P + ++ CI GC
Sbjct: 649 GYPACTNVIWLSEAIEDVEVLSETCNQCTEN-IRKLKFKLVRNVVPL-YGTSYTTCI-GC 705
Query: 722 DETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSG 781
D T +++ I I GR NN S + A H S+ S FS
Sbjct: 706 DSTFNEMLNI--KNDCIRQTGRSNHTIQNNTSSSASQSFATTIGSTQRHQSAP-NSSFSN 762
Query: 782 SR 783
R
Sbjct: 763 PR 764
>gi|307184421|gb|EFN70830.1| DNA topoisomerase 3-alpha [Camponotus floridanus]
Length = 1044
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 310/730 (42%), Positives = 443/730 (60%), Gaps = 21/730 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AKS+A LS R REG S YNKI+EFN + Q C M+MTSV+GH
Sbjct: 1 MKVLNVAEKHDAAKSIAAHLSHGTS-RKREGLSVYNKIFEFNVQLWNQNCQMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK-DIKKTLEEEARRCQWLVLWLDCDR 126
L+ +F YRKW C P L+ APV K E+ IKKTLE E + C L++W DCDR
Sbjct: 60 LLGYEFTGAYRKWQGCHPLSLFDAPVSKQCSEENYIKIKKTLEREIKSCNALIIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I+VC+ V ++ + RA+FS + + I +A+ L +P++ +DAVD R E+D
Sbjct: 120 EGENIGFEIIQVCQTVKPNIRVYRAKFSEITKQSIERALSTLGEPDKATSDAVDVRSELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ L+ +++ D +++SYG CQFPTLGFVVER+ I +SE +W
Sbjct: 180 LRIGAAFTRFQTLRLQKVFPNTLGD---MLISYGSCQFPTLGFVVERFLAIDRFKSEPYW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I E F W R LF+ I +MC++ P ATV KV + K K+ P PL
Sbjct: 237 KIKVIDDRNEIAVEFRWARVRLFEKMPCQIFLDMCLERPEATVEKVMCKPKSKWRPLPLD 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELEK+ SR R++++ TM++AE LY GFISYPRTET+ F NL +V++Q+ H
Sbjct: 297 TIELEKQGSRKLRLNAKETMRIAEKLYTQGFISYPRTETNIFPKELNLVPLVEQQVNHEA 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +A+ LL+ +G+ P G D+AHPPIHPTK++ + ++YE +VRHFL
Sbjct: 357 WGDFARGLLE--SGI--TPRQGKKSDQAHPPIHPTKYTDS---LQGNEARVYEFIVRHFL 409
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S+ A G ET VEI+IAGE F+T+G I+AKNYLDVY ++ W I +Y Q F P
Sbjct: 410 ACLSKNAEGRETTVEIDIAGEKFTTNGLEIIAKNYLDVYIYDKWNNKQIHSYEQRQVFRP 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T++ + T P LL+EA+L++ MDK GIGTDAT DHI + R Y + F P
Sbjct: 470 TSIDMVEEKTSAPNLLTEAELIALMDKHGIGTDATHADHIDTIKSRQYVGLTDSQHFMPG 529
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LVMGYD+MG+++ KP+LR+ +E+D+K + K +VL N + + F A
Sbjct: 530 KLGIGLVMGYDNMGFQMSKPHLRASLENDLKLICERRKDPNEVLQNQIDTYREVFKVAME 589
Query: 607 KKVKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGN-LMVGCL 661
+ + +A+ + ER + E Q + +C C SNMVLK+ + G + C+
Sbjct: 590 RANLIDDALAQYLDERPTQSEQIQFPLVTDVAIFKCPKCG-SNMVLKERKQGKGKYISCM 648
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
+P C N +W P +V + + CN CT G ++ ++F ++ + P + ++ CI GC
Sbjct: 649 GYPTCLNVIWFPEAVKDVEILNEICNQCT-GNIHKLKFTLVRN-VLPLYGTSYTTCI-GC 705
Query: 722 DETLRQLIEI 731
D +++ I
Sbjct: 706 DNAFNEILNI 715
>gi|91089373|ref|XP_973578.1| PREDICTED: similar to topoisomerase (DNA) III alpha [Tribolium
castaneum]
gi|270012533|gb|EFA08981.1| hypothetical protein TcasGA2_TC006688 [Tribolium castaneum]
Length = 951
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 314/727 (43%), Positives = 424/727 (58%), Gaps = 18/727 (2%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEK AK++A ILS+ R REG S YNKIYEF+ ++ GQ HM+MTSV+GHL+
Sbjct: 4 LNVAEKNDAAKNIAAILSRGASQR-REGFSPYNKIYEFDATVMGQQAHMIMTSVSGHLLN 62
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+F +R W SC+P L+ APV K PED + IK+TLE E R CQ L++W DCDREGEN
Sbjct: 63 YEFGPSFRNWKSCNPVALFDAPVVKMCPEDYQKIKRTLEREIRSCQGLIIWTDCDREGEN 122
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FE+I+VC V +L + RA+FS + I +A+ L PN+ +DAVD RQE+DLR G
Sbjct: 123 IGFEIIKVCSDVKPNLRIYRAKFSEITAASIFRALNTLGQPNKNVSDAVDVRQELDLRTG 182
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+FTR QT+ L+ + D ++SYG CQFPTLGFVVERY IQ E FW I
Sbjct: 183 AAFTRLQTLRLQRVFPQKLADR---LISYGSCQFPTLGFVVERYQAIQDFIPEPFWKIKM 239
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+H + T F+W R LFD + I ++C + P ATV KV + K K+ P PL T+E+
Sbjct: 240 NHTVNDITTEFTWKRDRLFDKNACEAILDICKESPNATVEKVEGKPKSKWRPLPLDTVEM 299
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
EK SR +++++ TMK+AE LY G ISYPRTET+ F NL +V Q WG +
Sbjct: 300 EKTVSRKLKITAKDTMKIAEKLYTQGLISYPRTETNIFPKELNLANLVTLQQNDQRWGAF 359
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
A R+++ P G D+AHPPIHPTK + + + ++YE +VRHFLACV
Sbjct: 360 AHRIMNEGGPA---PRQGKKSDQAHPPIHPTKHADN---LTGNEQRVYEYIVRHFLACVH 413
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
+ A G ET+V +IAGE F+ G +IL KNYL+VY +E W I +Y G FIP+ L
Sbjct: 414 KDAQGFETVVTADIAGEKFTAKGLIILEKNYLEVYTYEKWNAKEIHSYQQGDTFIPSVLE 473
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
L G T PP LL+EADL++ M+K GIGTDAT +HI + R Y N F P +G
Sbjct: 474 LYEGATAPPKLLTEADLIALMEKHGIGTDATHAEHIDTIKTREYVGLHENIYFVPGTLGM 533
Query: 551 ALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
LV GY+++G E L KP LR+ E D+K + G K V +Q+ +A F K
Sbjct: 534 GLVEGYNNIGLEVSLAKPILRADFEKDLKLICDGLKDPEVVRREQIQKYRAVFETVVEKM 593
Query: 609 VKLLEAMG-IFFERWSGGEDQQAAGEVVR---QCGICQESNMVLKKSRDGNLMVGCLAFP 664
++ E + +R ED+ VR +C C + K + + C +P
Sbjct: 594 RQIDECLANRLADRPQVVEDEHYENVEVRPVLKCPKCGNDMTIRNKKNNAGKFISCTGYP 653
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
CRNA+WL +V V +C C P V L++ KF+Q+ N N L CIGGCD
Sbjct: 654 DCRNAIWLSQNVETIEVLDESCPQCGPN-VKLVKMKFKQNVFVGEPNPNTL-CIGGCDIN 711
Query: 725 LRQLIEI 731
+ + ++I
Sbjct: 712 VLEALDI 718
>gi|170039894|ref|XP_001847754.1| DNA topoisomerase 3-alpha [Culex quinquefasciatus]
gi|167863475|gb|EDS26858.1| DNA topoisomerase 3-alpha [Culex quinquefasciatus]
Length = 992
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 318/735 (43%), Positives = 438/735 (59%), Gaps = 24/735 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++A +LS+ R REG S YNKIYEF+Y++RGQ M+MTSV+GH
Sbjct: 1 MKYLNVAEKNDAAKNIAALLSRGASQR-REGYSPYNKIYEFDYNLRGQQVKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ +F +R WHSC+P L+ APVRK E + IK+TLE E R C LV+W DCDRE
Sbjct: 60 LLNFEFLPSFRGWHSCNPEQLFDAPVRKGCTESAEKIKRTLEREIRGCGALVIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI FE+IEVCRAV + + RA+FS + I +AV NL P++ ++AV+ R E+DL
Sbjct: 120 GENIGFEIIEVCRAVKPQIKVLRAKFSEITAASIKRAVDNLAAPDELQSEAVNVRSELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQT+ L+N D ++ N ++SYG CQ PTLGFV +RY EI+ + FW
Sbjct: 180 RIGAAFTRFQTLRLQNVFPDKIS---NSLVSYGSCQIPTLGFVAQRYKEIENFIPQAFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I +H E T F+W R LFD +C E A + V + K K+ P PL T
Sbjct: 237 IKLNHTIGELTVEFNWSRNRLFDKQCCEAYLMLCQSEQMAKIVSVTNKPKSKWRPTPLDT 296
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ELEK SR +++++ TM +AE LY G ISYPRTET+ F+ L +V+ Q GHP+W
Sbjct: 297 VELEKLGSRKLKLNAKTTMTIAEKLYTQGIISYPRTETNMFTHDMKLAPLVEMQAGHPEW 356
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G +AQ+++ NP +G D+AHPPIHPTKF + S D ++YELVVRHFLA
Sbjct: 357 GDFAQKVMQWGP----NPRNGKKSDQAHPPIHPTKFVTN---LSGDEKRVYELVVRHFLA 409
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
CVS+ AVGAETIV +A E F+ SG IL +NYL+VY ++ W I Y G F PT
Sbjct: 410 CVSKDAVGAETIVNAVLAEEEFTASGLCILERNYLEVYPYDRWNSKEIHAYQMGNTFEPT 469
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF-APT 546
L L G T P +L+EADL++ M+K GIGTDAT +HI + +R Y I +A+ F P
Sbjct: 470 ELGLHEGSTTAPNMLTEADLIALMEKHGIGTDATHAEHINTIKERGY-IGEADRGFLVPG 528
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LV GY+ M L +P LR+ +E D+K + G + VL +Q+ K +
Sbjct: 529 TLGMGLVEGYESMELPLAQPKLRAGLEEDLKRICEGQRDPKVVLQEQIQKYKEAYRVITE 588
Query: 607 KKVKLLEAMGIFFE---RWSGGEDQQAAG----EVVRQCGICQESNMVLKKSRDGNLMVG 659
K L +AMG + R + AAG + V +C C + + K + +G
Sbjct: 589 KARALDQAMGQRLQQTPRDAPTNQFNAAGPSSIQEVCKCPKCSQMMCLKTKKDNSGYYLG 648
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYL-IQFKFRQH--EIPPGFNVNHLG 716
CL FP C+N+VW ++ EA+ TT C+ C G L ++FKF ++ + N ++
Sbjct: 649 CLGFPDCKNSVWFDDNIKEASATTEVCSKCATGNKKLEVKFKFSRYYAMLNHTNNESYKT 708
Query: 717 CIGGCDETLRQLIEI 731
CI CD+ R+ + I
Sbjct: 709 CI-VCDDKFRETLGI 722
>gi|308801985|ref|XP_003078306.1| DNA topoisomerase III alpha, putative (ISS) [Ostreococcus tauri]
gi|116056757|emb|CAL53046.1| DNA topoisomerase III alpha, putative (ISS) [Ostreococcus tauri]
Length = 842
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 342/857 (39%), Positives = 466/857 (54%), Gaps = 110/857 (12%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVAK ++ +LS N R+REG + +NK++EF + +RG+P M+ TSVTGHL
Sbjct: 7 VLNVAEKPSVAKEISRVLS-NGTARVREGATAWNKVWEFEHVVRGRPVTMVFTSVTGHLS 65
Query: 70 ELDF-DERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+F +ER+R+W S DP +L A V K VPEDK+ + ++ EAR C ++LWLDCDRE
Sbjct: 66 NFEFAEERHRRWASVDPRELLVDARVVKRVPEDKRKTAENVKREARGCDTVILWLDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENIAFEV+E CR + RARFSAL + +A+ NLV PN++ A AVD R E+DL
Sbjct: 126 GENIAFEVLEACRQAKPGITALRARFSALGRGDADRALANLVQPNEYEAKAVDMRMELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNL-VLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
R+GA+FTRF T+ L+ + DD+ ++SYGPCQFPTLGF+V+R W+I AH SE+FW
Sbjct: 186 RLGAAFTRFNTLALQRAGVGLPVDDKGKSIVSYGPCQFPTLGFIVQRKWDIDAHVSEDFW 245
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I CSH E F W RG LFD A ++ MC + ATV V QE ++PP+PL+
Sbjct: 246 SIKCSHAREGTNTKFEWSRGRLFDRGFASALHNMCARANVATVIDVDGQESRRWPPHPLN 305
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIE++KR +R R+S E MK+AEDLY GFISYPRTETD F + N G +++ HP
Sbjct: 306 TIEMQKRLNRTLRISPEQIMKIAEDLYNDGFISYPRTETDKFPADFNYDGTLRDLHPHPQ 365
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW------SQDHYKLYEL 420
+G Y +L++ G +R P GG DDKAHPPI+PTK +S E+++ +Q K+YE
Sbjct: 366 FGFYVDQLIN--GGRFRQPPGGGKDDKAHPPIYPTKLAS-EAQYQQMRAKNQHAPKVYEF 422
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY------------RFE 468
VVRHFLA S PA+ +T V+I +AGE F +G +I +NYLD+Y ++
Sbjct: 423 VVRHFLATCSHPAIAMKTHVDIVVAGETFRATGVMIRERNYLDIYGPGPPEGPRLAPAYD 482
Query: 469 SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKK 528
+WG +P Y G+QF+P L+L G TRPP LSE DLLS M+ IGTDAT HI+K
Sbjct: 483 NWGNSTLPLYTPGEQFVP-ALSLHEGQTRPPDYLSEVDLLSLMESHMIGTDATQAQHIEK 541
Query: 529 LL-DRFYAIKDANTRFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSK 586
++ +R YA K + R PT +GEALV+ YD MG ++W P R+ ME+D+ V+
Sbjct: 542 VVGERGYARKVGDNRLTPTQLGEALVLAYDRMGVADMWLPTKRAKMEADVDAVAKNRLDP 601
Query: 587 ADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAG-------------- 632
L LQ M + + L +G F G+D A G
Sbjct: 602 NAGLRAHLQAMLDAYDRVAADGLTLTTTVGAFMN----GQDNAANGVGHRPMPPGNDING 657
Query: 633 ----------EVVRQ-CGICQESNMVLKKS--RDGNLMVGCLAFPQCRNAVWLPGSVSEA 679
V+R C CQ + + R+ + A P C + + +P +
Sbjct: 658 NGADAFGDLIGVIRDTCPSCQGESTLRSAPGVRNSKSFIASCAVPHCMSRIAMPSCTRDI 717
Query: 680 AVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHL----GCIGGCDETLRQLIEICGTG 735
+ C C L+ FKF +P G+ H+ GCI CD + L+ C
Sbjct: 718 KIEQEGCGRCQ---GRLLTFKFSTLYLPVGY--QHMQRWSGCI-FCDAEFQNLLRACQAE 771
Query: 736 SRIPARGRGPTASSN-----------------------------------NGQQSNHRQR 760
PAR P N GQQ N
Sbjct: 772 DHPPAR-ESPARRPNPPPVADGYGRGGRGRGGRGGAAGRRRSRAERDEGVGGQQGN---- 826
Query: 761 ACIYCQQMGHSSSDCPS 777
C C + GH S +CP+
Sbjct: 827 -CFKCGEAGHWSMNCPN 842
>gi|195484485|ref|XP_002090715.1| GE13263 [Drosophila yakuba]
gi|194176816|gb|EDW90427.1| GE13263 [Drosophila yakuba]
Length = 1229
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 317/743 (42%), Positives = 429/743 (57%), Gaps = 34/743 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS N R REG S YNK+++F +RGQ M+MTSV+GH
Sbjct: 1 MKYLNVAEKNDAAKTIAGLLS-NGAARRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM+L F Y+ W + DP L+ APV+K V D + IK+TLE E R CQ L++W DCDRE
Sbjct: 60 LMQLAFQVSYKNWKTVDPRSLFDAPVKKRVSSDYEPIKRTLEREVRGCQGLIVWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+I+VCRA+ ++ + RA FS + + +A+Q L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIIDVCRAIKPNISVYRATFSEITSVAVRRALQQLGQPDKRQSDAVDVRTELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A SE FW
Sbjct: 180 RTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
I H ++ T F+W R LFD + +C+ EP A V V + K K+ P PL
Sbjct: 237 IKVLHTIDDLTVEFNWGRNRLFDKEACENYLLLCLAEPEPRALVESVTVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM VAE LY GFISYPRTET+ FS L +V+ Q GH
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTVAEKLYSKGFISYPRTETNQFSKEFALAPLVEMQTGHR 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +AQR+++ NP +G D+AHPPIHPTK + + ++YELVVRHF
Sbjct: 357 DWGAFAQRVIEWGP----NPRNGNKSDQAHPPIHPTKLAEN---LQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY +E W I Y +GQ+F
Sbjct: 410 LACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYEKWSAKQIHHYENGQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y P
Sbjct: 470 PTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLDKGFLVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---- 601
IG L GYD M L KP LR+ ESD+K + G K VL + + K +
Sbjct: 530 GVIGMGLYEGYDAMELTLAKPKLRAEFESDLKLICQGQKDPKIVLTEQIAKYKQSYQQIT 589
Query: 602 ---------LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK-KS 651
+ AR+ + + G E GG Q + + QC C E+ + LK K
Sbjct: 590 EKITAMDAKISARINETPTANSSGQVGE--DGGGPSQGTMQSIFQCPKCNEAPLALKPKK 647
Query: 652 RDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFN 711
+GC FP C+N VWLP + +V + C +C G +++F+ FN
Sbjct: 648 NQQGWYIGCNNFPDCKNVVWLPTECKDVSVLSECCPTCGDG-YRMLKFRLSTPYYRGVFN 706
Query: 712 VNH---LGCIGGCDETLRQLIEI 731
H C+ CD R I
Sbjct: 707 TPHGWYKTCL-PCDNLFRTTFNI 728
>gi|195397674|ref|XP_002057453.1| GJ18138 [Drosophila virilis]
gi|194141107|gb|EDW57526.1| GJ18138 [Drosophila virilis]
Length = 1355
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 316/739 (42%), Positives = 430/739 (58%), Gaps = 29/739 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS R REG S YNK+Y+F +RG+ M+MTSV+GH
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSNGSAHR-REGYSVYNKVYDFEAQVRGRNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM+L+F YR W + DP L+ AP+RK V E+ + IK+TLE E R CQ L++W DCDRE
Sbjct: 60 LMQLEFLVSYRNWRNVDPRSLFDAPIRKSVGENYEPIKRTLEREVRGCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+I+VCRA+ +L + RA FS + + +A+ L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIIDVCRAIKPNLTVYRASFSEITTTAVRRALLQLGQPDKRQSDAVDVRSELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQT+ L+ + + D ++SYG CQ PTLGFV ERY EI+A SE FW
Sbjct: 180 RTGAAITRFQTLRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
I H E+ T F+W R LFD + +C+ EP ATV V + K K+ P PL
Sbjct: 237 IRVLHTIEDLTVEFNWARNRLFDKEACENYLLLCLAEPEPRATVESVTVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V++ GH
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFISYPRTETNQFSKEFELAPLVEQHTGHE 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +AQR+L+ NP +G D+AHPPIHPTK + + ++YELVVRHF
Sbjct: 357 AWGAFAQRVLEWGP----NPRNGNKSDQAHPPIHPTKMV---TNLQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ETIV I+IAGE FS +G VI +NYLDVY ++ W I Y GQ+F
Sbjct: 410 LACVSKDAVGSETIVSIDIAGEKFSANGLVIHERNYLDVYVYDKWSAKQIHNYEQGQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT + L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y P
Sbjct: 470 PTEIVLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVVDKGALVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---- 601
IG L GYD M L KP LR+ E+D+K + +G K VL + + K +
Sbjct: 530 GVIGMGLYEGYDAMELALAKPLLRAEFEADLKRICLGEKDPKLVLREQIAKYKQAYQQIM 589
Query: 602 -----LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK-KSRDGN 655
+DA++ + ++ E + E + QC C+ + +VLK K +
Sbjct: 590 EKITAMDAKIAQ-RINETPAAAATSDASQEQSINIPRELFQCPKCELAPLVLKPKKVQTS 648
Query: 656 LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNH- 714
+GCL FP C+N +WLP E V C SC G ++++F+ FN H
Sbjct: 649 FFIGCLNFPDCKNVIWLPEDCKEYCVLDECCPSCGEG-YHMLKFRLSNAYYRSLFNAPHG 707
Query: 715 --LGCIGGCDETLRQLIEI 731
C+ CDE R I
Sbjct: 708 WYKNCL-RCDELFRSTFNI 725
>gi|195031343|ref|XP_001988332.1| GH11108 [Drosophila grimshawi]
gi|193904332|gb|EDW03199.1| GH11108 [Drosophila grimshawi]
Length = 1269
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 324/743 (43%), Positives = 436/743 (58%), Gaps = 37/743 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS R REG S YNK+Y+F +RGQ M+MTSV+GH
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSGGSANR-REGYSVYNKVYDFEAQVRGQNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM++DF YR W + DP L+ AP+RK V E+ + IK+TLE E R CQ L++W DCDRE
Sbjct: 60 LMQVDFLASYRNWLNVDPRSLFDAPIRKTVGENYEPIKRTLEREVRGCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+I VCRA+ L + RA FS + + +A+Q L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIINVCRAIKPSLTVYRASFSEITTASVRRALQQLGQPDKRQSDAVDVRTELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQTM L+ + + RNL+ SYG CQ PTLGFV ERY EI+A SE FW
Sbjct: 180 RTGAAITRFQTMRLQRLFPEKIA--RNLI-SYGSCQIPTLGFVAERYKEIEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
I H E+ T F+W R LFD + +C+ EP ATV V + K K+ P PL
Sbjct: 237 IRVLHTIEDLTVEFNWARNRLFDKEACENYLLLCMSEPEPRATVESVTVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY G ISYPRTET+ FS L IV +Q H
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTIAEKLYSQGIISYPRTETNQFSKEFELAPIVAQQTSHE 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +AQR+L+ NP +G D+AHPPIHP K +G + ++YELVVRHF
Sbjct: 357 AWGAFAQRVLEWGP----NPRNGTKSDQAHPPIHPIKLVTG---LQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ETIV I+IAGE FS +G VI +NYLDVY +E+W I Y GQ+F
Sbjct: 410 LACVSKDAVGSETIVNIDIAGEKFSANGLVIHERNYLDVYVYENWSAKQIHNYERGQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT + L G T PPLL+EADL++ M+K GIGTDAT +HI + R Y P
Sbjct: 470 PTEIMLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTVKKRGYIGVVDKGALVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---- 601
IG L GYD M L KP LR+ E+D+K + +G K VL+ + + K +
Sbjct: 530 GIIGMGLYEGYDAMELALAKPLLRAEFEADLKRICLGEKDPRLVLSEQIVKYKQAYQQIM 589
Query: 602 -----LDARL-KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQ---CGICQESNMVLK-KS 651
+DA++ +++ A+ + SG Q +G +VR+ C C ++ + LK K
Sbjct: 590 DKITAMDAKISQRLNETPAVPSATDNPSG----QTSG-MVRELFPCPQCDQAQLALKPKK 644
Query: 652 RDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFN 711
+ +GCL FP C+N VWLP E +V C +C G ++++F+ FN
Sbjct: 645 NQTSFFIGCLNFPDCKNVVWLPEECKEYSVLDECCPNCGDG-YHMLKFRLSSAYYRGLFN 703
Query: 712 VN---HLGCIGGCDETLRQLIEI 731
+ C+ CDE R I
Sbjct: 704 APNGWYKNCL-RCDELFRSTFNI 725
>gi|195164694|ref|XP_002023181.1| GL21219 [Drosophila persimilis]
gi|194105266|gb|EDW27309.1| GL21219 [Drosophila persimilis]
Length = 1178
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 322/739 (43%), Positives = 424/739 (57%), Gaps = 29/739 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS R REG S YNKIY+F +RGQ M+MTSV+GH
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSNGAANR-REGYSVYNKIYDFEAPVRGQNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM+L+F YR W DP L+ APVRK V E IKKTLE E R CQ L++W DCDRE
Sbjct: 60 LMQLEFQVSYRNWRVVDPGSLFDAPVRKSVGESYLPIKKTLEREVRGCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+I VCRA+ +L + RA FS + + +A+Q L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIISVCRAIKPNLTIYRASFSEITTIAVRRALQQLGQPDKRQSDAVDVRTELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A SE FW
Sbjct: 180 RTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
I H E+ T F+W R LFD + +C+ EP ATV V + K K+ P PL
Sbjct: 237 IRVLHTIEDLTVEFNWARNRLFDKEACENYLLLCLSEPEPRATVESVTVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +VQ Q GH
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFISYPRTETNQFSKEFELAPLVQLQAGHS 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +AQR+LD NP +G D+AHPPIHPTK + + ++YELVVRHF
Sbjct: 357 DWGAFAQRVLDWGP----NPRNGSKSDQAHPPIHPTKSADN---LQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y Q+F
Sbjct: 410 LACVSKDAVGSETVVNIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKRIHHYERDQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y P
Sbjct: 470 PTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLDKGALVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---- 601
IG L GYD M L KP LR+ E+D+K + +G K VL + + K +
Sbjct: 530 GVIGMGLYEGYDAMELALAKPQLRAEFEADLKLICLGQKDPQLVLTEQIAKYKLSYQQIT 589
Query: 602 -----LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK-KSRDGN 655
+DA++ ++ EA Q + + QC C E+ + LK K
Sbjct: 590 DKITAMDAKI-SARINEAPAATPPGQPAVGHNQLTMQTLFQCPKCDEAPLALKPKKNQQG 648
Query: 656 LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNH- 714
+GC FP C+N VWLP E +V C +C G +++F+ FN H
Sbjct: 649 WYIGCNNFPDCKNVVWLPEECKEVSVLDECCPTCGAGH-RMLKFRLSTPYYRGVFNTPHG 707
Query: 715 --LGCIGGCDETLRQLIEI 731
C+ CD R I
Sbjct: 708 WYKTCL-PCDGLFRTTFNI 725
>gi|330804855|ref|XP_003290405.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
gi|325079456|gb|EGC33055.1| hypothetical protein DICPUDRAFT_37309 [Dictyostelium purpureum]
Length = 831
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 303/688 (44%), Positives = 419/688 (60%), Gaps = 21/688 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-CHMLMTSVTG 66
+ +LNVAEKPS AK +A ILS N+ R+REG+S+YNKI++F+ I Q M+ TSVTG
Sbjct: 1 MKILNVAEKPSAAKEIAQILS-NKKCRMREGKSQYNKIWDFHLDILNQKGAEMIFTSVTG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HLME D DERY+ W+SC+P L+ P+RK V DK +IK+ LE E ++C L+LWLDCDR
Sbjct: 60 HLMETDVDERYKPWNSCEPIKLFEVPIRKIVSHDKLNIKQQLETEIKKCDVLILWLDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENIAFEV++VC + + RA FSA+I RE+++A+ NL +PN+ + AVD R EID
Sbjct: 120 EGENIAFEVLQVCNSAKKRFKVYRAIFSAIIPREVNRAIANLKEPNEKDSIAVDTRIEID 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNL----VLSYGPCQFPTLGFVVERYWEIQAHES 242
LR+GA+FTRFQT+ LK F +D + ++SYGPCQFPTLGFVVERY+
Sbjct: 180 LRLGAAFTRFQTLYLKKFQLDQPQPTQQQQQKSIISYGPCQFPTLGFVVERYFRKTNFVR 239
Query: 243 EEFWTINC--------SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
E+FWT+N ++ FSW R LFDY++A I+YE C+ P A V +
Sbjct: 240 EDFWTVNVYDNRRIETNNDDRPSEVVFSWKRKRLFDYSTAYILYEKCLDNPQAVVVDINT 299
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
+ KY P PL+TIEL+K+AS+ R+SS TM +AEDLY G ISYPRTETD+F GT+
Sbjct: 300 NDS-KYRPLPLTTIELQKQASKKLRISSSDTMAIAEDLYNKGLISYPRTETDTFQQGTDF 358
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
G++ Q HP WG YAQRL + G ++ P SG ++D +HPPIHPT ++ S
Sbjct: 359 RGLIGIQGSHPQWGQYAQRLNN---GEFKYPRSGTNNDNSHPPIHPT--AACPSTLPDRS 413
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
K+YE + R FLAC S +V T V I I GE F +G ++ YL+VY ++
Sbjct: 414 KKVYEFITRRFLACCSTESVLGNTSVTIEIEGEQFVETGVMVKEWGYLEVYPYDKRSNKT 473
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
IP Y G++F + L +G T+PP L+E++LLS MDK IGTDATM HI+ + DR Y
Sbjct: 474 IPKYRKGERFQVKRIELYNGTTQPPHFLTESELLSAMDKNKIGTDATMATHIQTIQDRGY 533
Query: 535 AIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
IK+ ++F PT +G +LV Y+ MG++ KP LR+ +ESD+ E+S G K K +VL +
Sbjct: 534 VIKNQESQFEPTKLGISLVASYELMGFQFSKPELRAQIESDVNEISKGRKQKEEVLRTTI 593
Query: 595 QQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDG 654
++ K F A + F++ + + CG C + M K R+
Sbjct: 594 ERYKELFEIAFQNTDCFDRSFTQFYQLAEQRTNFHIEKPQLVLCGKCN-NKMDFKSDRNQ 652
Query: 655 NLMVGCLAFPQCRNAVWLPGSVSEAAVT 682
L+ P C+++ LP A+T
Sbjct: 653 ETPKRILSCPTCKDSFDLPVKGEIGALT 680
>gi|198473327|ref|XP_001356254.2| GA10090 [Drosophila pseudoobscura pseudoobscura]
gi|198139406|gb|EAL33317.2| GA10090 [Drosophila pseudoobscura pseudoobscura]
Length = 1178
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 320/739 (43%), Positives = 425/739 (57%), Gaps = 29/739 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS R REG S YNKIY+F +RGQ M+MTSV+GH
Sbjct: 1 MKFLNVAEKNDAAKTIAGLLSNGAANR-REGYSVYNKIYDFEAPVRGQNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM+L+F YR W DP L+ APVRK V E IK+TLE E R CQ L++W DCDRE
Sbjct: 60 LMQLEFQVSYRNWRVVDPGSLFDAPVRKSVGESYLPIKRTLEREVRGCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+I VCRA+ +L + RA FS + + +A+Q L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIISVCRAIKPNLTIYRASFSEITTIAVRRALQQLGQPDKRQSDAVDVRTELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A SE FW
Sbjct: 180 RTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
I H E+ T F+W R LFD + + +C+ EP ATV V + K K+ P PL
Sbjct: 237 IRVLHTIEDLTVEFNWARNRLFDKEACENYHLLCLSEPEPRATVESVTVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +VQ Q GH
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFISYPRTETNQFSKEFELAPLVQLQAGHS 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +A+R+LD NP +G D+AHPPIHPTK + + ++YELVVRHF
Sbjct: 357 DWGAFARRVLDWGP----NPRNGSKSDQAHPPIHPTKSADN---LQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y Q+F
Sbjct: 410 LACVSKDAVGSETVVNIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKRIHHYERDQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y P
Sbjct: 470 PTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLDKGALVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---- 601
IG L GYD M L KP LR+ E+D+K + +G K VL + + K +
Sbjct: 530 GVIGMGLYEGYDAMELALAKPQLRAEFEADLKLICLGQKDPQLVLTEQIAKYKLSYQQIT 589
Query: 602 -----LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK-KSRDGN 655
+DA++ ++ EA Q + + QC C E+ + LK K
Sbjct: 590 DKITAMDAKI-SARINEAPAATPPGQPAVGHNQLTMQTLFQCPKCDEAPLALKPKKNQQG 648
Query: 656 LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNH- 714
+GC FP C+N VWLP E +V C +C G +++F+ FN H
Sbjct: 649 WYIGCNNFPDCKNVVWLPEECKEVSVLDECCPTCGAG-HRMLKFRLSTPYYRGVFNTPHG 707
Query: 715 --LGCIGGCDETLRQLIEI 731
C+ CD R I
Sbjct: 708 WYKTCL-PCDGLFRTTFNI 725
>gi|24585251|ref|NP_523602.2| topoisomerase 3alpha [Drosophila melanogaster]
gi|33860232|sp|Q9NG98.2|TOP3A_DROME RecName: Full=DNA topoisomerase 3-alpha; AltName: Full=DNA
topoisomerase III alpha
gi|22946848|gb|AAF53813.2| topoisomerase 3alpha [Drosophila melanogaster]
gi|51092196|gb|AAT94511.1| LD04601p [Drosophila melanogaster]
gi|220950368|gb|ACL87727.1| Top3alpha-PA [synthetic construct]
Length = 1250
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 306/714 (42%), Positives = 421/714 (58%), Gaps = 26/714 (3%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLM 61
A G+ + LNVAEK AK++AG+LS R REG S YNK+++F +RGQ M+M
Sbjct: 20 ANPGQAMKYLNVAEKNDAAKTIAGLLSNGAAQR-REGYSVYNKVFDFEAPVRGQNAKMVM 78
Query: 62 TSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLW 121
TSV+GH+M+L F Y+ W + DP L+ APV+K V D + IK+TLE E R CQ L++W
Sbjct: 79 TSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIW 138
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DCDREGENI +E+I+VCRA+ ++ + RA FS + + +A+Q L P++ +DAVD
Sbjct: 139 TDCDREGENIGYEIIDVCRAIKPNISVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDV 198
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E+DLR GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A
Sbjct: 199 RTELDLRTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFV 255
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLK 299
SE FW I H ++ T F+W R LFD + +C+ EP A V V + K K
Sbjct: 256 SEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVKPKHK 315
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
+ P PL T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V+
Sbjct: 316 WRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALAPLVE 375
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
Q GH DWG +AQR+++ NP +G D+AHPPIHPTK + + ++YE
Sbjct: 376 MQTGHRDWGAFAQRVIEWGP----NPRNGNKSDQAHPPIHPTKLAEN---LQGNEARVYE 428
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVVRHFLACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y
Sbjct: 429 LVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYE 488
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
+GQ+F PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y
Sbjct: 489 NGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLD 548
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
P IG L GYD M L KP LR+ E D+K + G K VL + + K
Sbjct: 549 KGFLVPGVIGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLTEQIAKYKQ 608
Query: 600 CF---------LDARL--KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVL 648
+ +DA++ + + A E G + + QC C E+ + L
Sbjct: 609 AYQQITDKITAMDAKISARINETPAANSAVQEGADGSAPSHGIIQSIFQCPKCNEAPLAL 668
Query: 649 K-KSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKF 701
K K +GC FP C+NAVWLP +A+V C +C G +++F+
Sbjct: 669 KPKKNQQGWYIGCNNFPDCKNAVWLPTECKDASVLDECCPTCGDG-YRMLKFRL 721
>gi|7960302|gb|AAF71288.1|AF255733_1 DNA topoisomerase III alpha [Drosophila melanogaster]
Length = 1250
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 306/714 (42%), Positives = 420/714 (58%), Gaps = 26/714 (3%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLM 61
A G+ + LNVAEK AK++AG+LS R REG S YNK+++F +RGQ M+M
Sbjct: 20 ANPGQAMKYLNVAEKNDAAKTIAGLLSNGAAQR-REGYSVYNKVFDFEAPVRGQNAKMVM 78
Query: 62 TSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLW 121
TSV+GH+M+L F Y+ W + DP L+ APV K V D + IK+TLE E R CQ L++W
Sbjct: 79 TSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVEKGVGSDYEPIKRTLEREVRGCQGLIIW 138
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DCDREGENI +E+I+VCRA+ ++ + RA FS + + +A+Q L P++ +DAVD
Sbjct: 139 TDCDREGENIGYEIIDVCRAIKPNISVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDV 198
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E+DLR GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A
Sbjct: 199 RTELDLRTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFV 255
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLK 299
SE FW I H ++ T F+W R LFD + +C+ EP A V V + K K
Sbjct: 256 SEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVKPKHK 315
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
+ P PL T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V+
Sbjct: 316 WRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALAPLVE 375
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
Q GH DWG +AQR+++ NP +G D+AHPPIHPTK + + ++YE
Sbjct: 376 MQTGHRDWGAFAQRVIEWGP----NPRNGNKSDQAHPPIHPTKLAEN---LQGNEARVYE 428
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVVRHFLACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y
Sbjct: 429 LVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYE 488
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
+GQ+F PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y
Sbjct: 489 NGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLD 548
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
P IG L GYD M L KP LR+ E D+K + G K VL + + K
Sbjct: 549 KGFLVPGVIGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLTEQIAKYKQ 608
Query: 600 CF---------LDARL--KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVL 648
+ +DA++ + + A E G + + QC C E+ + L
Sbjct: 609 AYQQITDKITAMDAKISARINETPAANSAVQEGADGSAPSHGIIQSIFQCPKCNEAPLAL 668
Query: 649 K-KSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKF 701
K K +GC FP C+NAVWLP +A+V C +C G +++F+
Sbjct: 669 KPKKNQQGWYIGCNNFPDCKNAVWLPTECKDASVLDECCPTCGDG-YRMLKFRL 721
>gi|194761190|ref|XP_001962812.1| GF14242 [Drosophila ananassae]
gi|190616509|gb|EDV32033.1| GF14242 [Drosophila ananassae]
Length = 1209
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 309/741 (41%), Positives = 431/741 (58%), Gaps = 30/741 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK+++G+LS N R REG S YNK+Y+F +RG M+MTSV+GH
Sbjct: 1 MKFLNVAEKNDAAKTISGLLS-NGTARRREGYSVYNKVYDFEAVVRGSNSKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM+L+F +R W + DP L+ APVRK V +D + IK+TLE E R CQ L++W DCDRE
Sbjct: 60 LMQLEFLVSFRNWRNVDPGSLFDAPVRKSVGKDYEPIKRTLEREVRGCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+I+VCRA+ ++ + RA FS + + +A+Q L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIIDVCRAIKPNITVYRANFSEITTVAVRRALQQLGQPDKRQSDAVDVRSELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQTM + + D ++SYG CQ PTLGFV ERY E++A SE FW
Sbjct: 180 RTGAAITRFQTMRFQRLFPAKIADK---LISYGSCQIPTLGFVAERYKEVEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ--EPTATVTKVRQQEKLKYPPYPL 305
+ H ++ T F+W R LFD + +C++ P A V V + K K+ P P+
Sbjct: 237 VKVIHTIDDLTVEFNWARNRLFDKEACENYLLLCLEVPAPRALVESVTVKPKHKWRPTPM 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V+ Q G+
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTIAEKLYSKGFISYPRTETNQFSKEFELLPLVEMQTGNA 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WGP+AQR+++ NP +G D+AHPPIHPTK + + ++YELVVRHF
Sbjct: 357 AWGPFAQRVVEWGP----NPRNGNKSDQAHPPIHPTKAADN---LQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y Q+F
Sbjct: 410 LACVSKDAVGSETLVNIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYERNQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y P
Sbjct: 470 PTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGMVDKGALVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---- 601
IG L GY M L KP LR+ E D+K + G K VLA+ + + K +
Sbjct: 530 GVIGMGLYEGYGAMELALAKPQLRAEFELDLKLICQGQKDPKAVLADQITKYKQSYQQIT 589
Query: 602 -----LDARL-KKVKLLEAMGIFFERWSGGEDQ-QAAGEVVRQCGICQESNMVLK-KSRD 653
+DA++ ++ + A + + G +Q Q A + + QC C + + LK K
Sbjct: 590 DKITAMDAKIAARINEMPAENTSGQEGAQGSEQNQPAMQTLFQCPKCNVAPLALKAKKNQ 649
Query: 654 GNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVN 713
+GC FP C+NAVWLP + VT +C+ C L++F+F FN
Sbjct: 650 QGWYIGCTNFPDCKNAVWLPSECKDVTVTNESCSRCGDSH-RLLKFRFSTPYYRGVFNTP 708
Query: 714 H---LGCIGGCDETLRQLIEI 731
H C+ CD R I
Sbjct: 709 HGWYKTCL-PCDNLFRSTFNI 728
>gi|221486524|gb|EEE24785.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii GT1]
Length = 677
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 314/684 (45%), Positives = 417/684 (60%), Gaps = 41/684 (5%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
G I VLNVAEKPSVAK + +LS G + +SR+N +++F +S++ + C ML TSV
Sbjct: 3 GDRIIVLNVAEKPSVAKEASRLLSG--GYQNAPTQSRFNPVHQFEFSLQNRSCTMLFTSV 60
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHLM LDF Y+ W++ P DLY APV K++ +D D++K L + AR+ QWLVLWLDC
Sbjct: 61 RGHLMSLDFASAYQNWNTIPPEDLYGAPVEKNISQDAGDVRKNLVDLARKAQWLVLWLDC 120
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENIAFEV+ VCR N L + RA FSAL ++ +A + L P++ +DAVD R E
Sbjct: 121 DREGENIAFEVLSVCREANASLNVFRAVFSALTKADLERACRTLQAPDRNQSDAVDTRSE 180
Query: 185 IDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
IDLRIGASFTRF TM ++ + S T +SYGPCQ PTLGFVV R+ E++ E
Sbjct: 181 IDLRIGASFTRFLTMRYRSRVKLPSPT------ISYGPCQSPTLGFVVSRFVEVENFVRE 234
Query: 244 EFWTI--NCSHKSEEGTAT-------FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
+WTI S +E A F+W R LFD + +++YEMC++ P ATVT VR
Sbjct: 235 AYWTIRVTISKPDDEKGANAPPLSIDFTWERQRLFDQLAVLVLYEMCLENPEATVTDVRG 294
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
E+ K P PL T+EL K ASR RMSS M +AE LYQ G ISYPRTET+ FS +L
Sbjct: 295 TERTKQRPVPLCTVELHKMASRKLRMSSARCMSIAESLYQRGIISYPRTETEVFSPTMDL 354
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
+++ IG WG YAQ+L+D LW P G DDKAHPPIHP K S ++
Sbjct: 355 LSLIRVHIGSTAWGTYAQKLVD-GDFLW--PSDGARDDKAHPPIHPLKLMQ-RSELEEEE 410
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
+KLYE V RHFLAC S+ A G ET VEI+IAGE F +G +L + +LDVY +E W G
Sbjct: 411 WKLYEFVTRHFLACCSEDAFGFETRVEIDIAGEGFYATGLTVLERRWLDVYPYEQWSGNR 470
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
+P ++ ++ +P+++ + T PPPLL+EADL+ MDK GIGTDATMHDHI+ + DR Y
Sbjct: 471 LPRFLVNERVMPSSILMSERQTEPPPLLTEADLIDLMDKNGIGTDATMHDHIRTIQDRHY 530
Query: 535 AIKDANTRFAPTNIGEALVMGYDDM----GYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
K+ N +F PT++G AL G+ + G +L P+LR+ ME+DM V+ G K+K +VL
Sbjct: 531 CYKNENMQFVPTDLGVALYQGFKRLAEVSGVDLSLPDLRARMEADMALVARGAKTKQEVL 590
Query: 591 ANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVV-----RQCGICQESN 645
+ +MK FL + + M R G ED V +CG C+ +
Sbjct: 591 DLHVSEMKRVFLLLKSHAAHMDTEMR---NRLGGLEDSVGRDGVTLVANFSECGKCR-AP 646
Query: 646 MVLKKSRDGNLMVGCLAFPQCRNA 669
M LK S + C A CR+A
Sbjct: 647 MDLKVSEN------CEAAQHCRHA 664
>gi|237834007|ref|XP_002366301.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii ME49]
gi|211963965|gb|EEA99160.1| DNA topoisomerase III alpha, putative [Toxoplasma gondii ME49]
Length = 677
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 313/684 (45%), Positives = 416/684 (60%), Gaps = 41/684 (5%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
G I VLNVAEKPSVAK + +LS G + +SR+N +++F +S++ + C ML TSV
Sbjct: 3 GDRITVLNVAEKPSVAKEASRLLSG--GYQNAPTQSRFNPVHQFEFSLQNRSCTMLFTSV 60
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHLM LDF Y+ W++ P DLY APV K++ +D D++K L + AR+ QWLVLWLDC
Sbjct: 61 RGHLMSLDFASAYQNWNTIPPEDLYGAPVEKNISQDAGDVRKNLVDLARKAQWLVLWLDC 120
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENIAFEV+ VCR N L + RA FSAL ++ +A + L P++ +DAVD R E
Sbjct: 121 DREGENIAFEVLSVCREANASLNVFRAVFSALTKADLERACRTLQAPDRNQSDAVDTRSE 180
Query: 185 IDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
IDLRIGASFTRF TM ++ + S T +SYGPCQ PTLGFVV R+ E++ E
Sbjct: 181 IDLRIGASFTRFLTMRYRSRVKLPSPT------ISYGPCQSPTLGFVVSRFVEVENFVRE 234
Query: 244 EFWTI--NCSHKSEEGTAT-------FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
+WTI S +E A F+W R LFD + +++YEMC++ P ATVT VR
Sbjct: 235 AYWTIRVTISKPDDEKGANAPPLSIDFTWERQRLFDQLAVLVLYEMCLENPEATVTDVRG 294
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
E+ K P PL T+EL K ASR RMSS M +AE LYQ G ISYPRTET+ FS +L
Sbjct: 295 TERTKQRPVPLCTVELHKMASRKLRMSSARCMSIAESLYQRGIISYPRTETEVFSPTMDL 354
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
+++ IG WG YAQ+L+D LW P G DDKAHPPIHP K S ++
Sbjct: 355 LSLIRVHIGSTAWGTYAQKLVD-GDFLW--PSDGARDDKAHPPIHPLKLMQ-RSELEEEE 410
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
+KLYE V RHFLAC S+ A G ET VEI+IAGE F +G +L + +LDVY +E W G
Sbjct: 411 WKLYEFVTRHFLACCSEDAFGFETRVEIDIAGEGFYATGLTVLERRWLDVYPYEQWSGNR 470
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
+P ++ ++ +P+++ + T PPPLL+EADL+ MDK GIGTDATMHDHI+ + DR Y
Sbjct: 471 LPRFLVNERVMPSSILMSERQTEPPPLLTEADLIDLMDKNGIGTDATMHDHIRTIQDRHY 530
Query: 535 AIKDANTRFAPTNIGEALVMGYDDM----GYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
K+ N +F PT++G AL G+ + G +L P+LR+ ME+DM V+ G K+K +VL
Sbjct: 531 CYKNENMQFVPTDLGVALYQGFKRLAEVSGVDLSLPDLRARMEADMALVARGAKTKQEVL 590
Query: 591 ANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVV-----RQCGICQESN 645
+ +MK FL + + M R G ED V +CG C+ +
Sbjct: 591 DLHVSEMKRVFLLLKSHAAHMDTEMR---NRLGGLEDSVGRDGVTLVANFSECGKCR-AP 646
Query: 646 MVLKKSRDGNLMVGCLAFPQCRNA 669
M LK S + C CR+A
Sbjct: 647 MDLKVSEN------CEPAQHCRHA 664
>gi|332019151|gb|EGI59663.1| DNA topoisomerase 3-alpha [Acromyrmex echinatior]
Length = 1005
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/678 (43%), Positives = 421/678 (62%), Gaps = 18/678 (2%)
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKH-VPEDKKDIKKTLEEEARRCQW 117
MLMTSV+GHL+ DF YRKWHSC P +L+ APV K V E+ ++IK+TLE EAR C
Sbjct: 1 MLMTSVSGHLLGYDFTNAYRKWHSCHPLNLFDAPVSKRCVEENHENIKRTLEREARFCNA 60
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
L++W DCDREGENI FE+I+VC+A+ ++ + RA+FS + + +A+QNLV P++ +D
Sbjct: 61 LIIWTDCDREGENIGFEIIQVCQAIKPNIRVYRAKFSEITRSSVERALQNLVQPDKAMSD 120
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AVD R E+DLRIGA+FTRFQT+ L+ +++ D L++SYG CQFPTLGFVVER+ I
Sbjct: 121 AVDVRSELDLRIGAAFTRFQTLRLQKVFPNTLGD---LLISYGSCQFPTLGFVVERFLAI 177
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+SE +W + EE + F W R LF+ I +MC+++P ATV KV + K
Sbjct: 178 DRFKSEPYWKLKVMDDREEISVEFRWARVRLFEKMPCQIFLDMCLEQPEATVEKVTCKPK 237
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K+ P PL TIELEK+ SR R++++ TM++AE LY GFISYPRTET+ F NL +
Sbjct: 238 SKWRPLPLDTIELEKQGSRKLRINAKETMRIAERLYTQGFISYPRTETNIFPKELNLRSL 297
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
V++Q+ + +WG +AQ LL+ +G+ P G D+AHPPIHP K++ + K+
Sbjct: 298 VEQQVNNQEWGNFAQNLLE--SGI--TPRQGKKSDQAHPPIHPIKYTDN---LYGNEAKV 350
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YE VVRHFLAC+S+ A G ET VEI+IAGE F +G I+ KNYLDVY +E W I +
Sbjct: 351 YEFVVRHFLACLSKNAEGRETTVEIDIAGEKFKANGLEIITKNYLDVYIYEKWNNKQIHS 410
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
Y Q F PT++ + T P LL+EA+L++ MDK GIGTDAT DHI + R Y
Sbjct: 411 YEQRQVFRPTSIDMVEEKTSAPNLLTEAELIALMDKHGIGTDATHADHIDTIKSRQYVGL 470
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
F P +G LVMGYD+MG+++ KP+LR+ +E D++ + K+ +VL + + +
Sbjct: 471 TDTQHFMPGKLGIGLVMGYDNMGFQMSKPHLRADLEKDLQLICESKKNPNEVLQSQINKY 530
Query: 598 KACFLDARLKKVKLLEAMGIFF-ERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDG 654
+ F A + + +++ + ER E Q V+ C + S MVLK+ R G
Sbjct: 531 REVFQVAIERANLIDDSLAHYLDERPLQTEQIQLNTPVISTIFKCPKCGSGMVLKQRRQG 590
Query: 655 -NLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVN 713
+ C+ +P+C N +W P +V + V TCN CT +Y ++FK ++ IP + +
Sbjct: 591 RGKYITCMGYPECTNVIWFPEAVEDVEVLNETCNQCTEN-IYKLKFKLVRNVIPM-YGTS 648
Query: 714 HLGCIGGCDETLRQLIEI 731
H CI GCD +++ I
Sbjct: 649 HTTCI-GCDTIFNEMLNI 665
>gi|195436636|ref|XP_002066263.1| GK18189 [Drosophila willistoni]
gi|194162348|gb|EDW77249.1| GK18189 [Drosophila willistoni]
Length = 1234
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/742 (41%), Positives = 422/742 (56%), Gaps = 31/742 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK+++ +L+ R REG S YNK+++F +RGQ M+MTSV+GH
Sbjct: 1 MKYLNVAEKNDAAKTISRLLANGAEHR-REGYSVYNKVFDFEAQVRGQNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM+L+F YR W + DP L+ AP++K V E IK+TLE E R CQ L++W DCDRE
Sbjct: 60 LMQLEFQVSYRNWRTVDPRSLFDAPIKKSVGEKYAPIKRTLEREIRGCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI FE+IEVCR + +L + RA FS + + +A+Q L +P++ +DAVD R E+DL
Sbjct: 120 GENIGFEIIEVCRGIKPNLKVYRASFSEITSAAVRRALQQLGEPDKRQSDAVDVRSELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GAS TRFQTM L+ +++ D ++SYG CQ PTLGFV ERY E++A SE FW
Sbjct: 180 RTGASITRFQTMRLQRLFPENIADK---LISYGSCQIPTLGFVAERYKEVEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
+ H E+ T F+W R LF+ +C+ EP A V V + K K+ P PL
Sbjct: 237 VKVLHTIEDLTVEFNWARNRLFNKEECENYLMLCLAEPAPRALVENVTVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ F+ NL +V+ H
Sbjct: 297 DTVEMEKMGSRKLKLSAKETMTIAEKLYSKGFISYPRTETNQFTKEFNLVPLVELHKDHN 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +AQR+LD NP +G D+AHPPIHP K + + ++YE+VVRHF
Sbjct: 357 DWGAFAQRVLDWGP----NPRNGNKSDQAHPPIHPIKAAIN---LQGNEARVYEMVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ETIV I+IAGE FS +G VI +NYLDVY +E W I Y Q+F
Sbjct: 410 LACVSKDAVGSETIVNIDIAGEKFSANGLVIHERNYLDVYVYEKWNAKQIHHYERDQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT ++L G T PPLL+EADL++ MDK GIGTDAT +HI + +R Y P
Sbjct: 470 PTEVSLHEGATTAPPLLTEADLIALMDKHGIGTDATHAEHISTIKERGYIGVIDKGFLVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
IG L GYD M L KP LR+ ESD+K + +G K VL+ + + K +
Sbjct: 530 GVIGMGLYEGYDAMELALAKPLLRAEFESDLKLICLGQKDPKVVLSEQIAKYKVAYQQIT 589
Query: 606 LKKVKLLEAMG------------IFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRD 653
K + + + G E+ + + QC C E+ + LK ++
Sbjct: 590 DKITAMDDKIAHRINETPAANNAAAGNGNDGQENVSNMQQELSQCPKCDEAPLALKARKN 649
Query: 654 GN-LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNV 712
+GCL FP C+N VWLP E V C +C G +++F+ FN
Sbjct: 650 QQGWFIGCLNFPDCKNVVWLPSECKEITVLDECCPTCGDG-HRMLKFRLSTPYYRGLFNT 708
Query: 713 NH---LGCIGGCDETLRQLIEI 731
H C+ CDE R I
Sbjct: 709 PHGWYKTCL-PCDELFRNTFNI 729
>gi|145345003|ref|XP_001417013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577239|gb|ABO95306.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 641
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 291/602 (48%), Positives = 393/602 (65%), Gaps = 28/602 (4%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLM 61
A G VLNVAEKPSVAK ++ +LS + REG SRYNK++EF Y +RG+ M+
Sbjct: 6 ARGAIGARVLNVAEKPSVAKEISRVLSNGRA-SAREGTSRYNKVWEFPYEVRGRRVTMVF 64
Query: 62 TSVTGHLMELDF-DERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
TSVTGHL +F D+R+R+W+ DP +L +A V K VPEDK+ + ++ EAR C ++
Sbjct: 65 TSVTGHLSNFEFADDRHRRWNGVDPRELLVNAAVAKRVPEDKRQVADNVKREARGCDSVI 124
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
LWLDCDREGENIAFEV+ CR N + RARFSAL + +A+ NLV+PNQ + AV
Sbjct: 125 LWLDCDREGENIAFEVLAACREANRGIAAFRARFSALSRGDADRALTNLVEPNQHESKAV 184
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDR-NLVLSYGPCQFPTLGFVVERYWEIQ 238
D R E+DLR+GA+FTRF T+ L+ + DD+ ++SYGPCQFPTLGF+V+R W+I
Sbjct: 185 DMRMELDLRLGAAFTRFNTLALQRAGVGLPVDDKGKSIVSYGPCQFPTLGFIVQRKWDID 244
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
AH SE+FW I CSH E T F W RG LFD A ++++CV+ +ATV V QE
Sbjct: 245 AHVSEDFWAIKCSHSREGTTTQFEWSRGRLFDRAFASALHDLCVRANSATVIDVDGQESK 304
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
++PP+PL+TIE++KR +R R+S E MK+AEDLY GFISYPRTETD F + + G +
Sbjct: 305 RWPPHPLNTIEMQKRLNRVLRISPEQIMKIAEDLYNDGFISYPRTETDKFPNDFDYDGTL 364
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ------ 412
+E HP +G Y +RL G +R P G DDKAHPPI+PTK ++ +++++Q
Sbjct: 365 REMHQHPQFGFYVERLT--TGGQFRRPPGGTKDDKAHPPIYPTKLAT-DAQYAQMRNKNH 421
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY------- 465
+ K+YE V RHFLA S PAV +T V+++IAGE F +G +I +NYLD+Y
Sbjct: 422 NAPKVYEFVCRHFLATCSYPAVALKTHVDVDIAGETFRATGVMIRERNYLDIYGPGPPEG 481
Query: 466 -----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDA 520
+++WG +P Y G+QF+P TL L G TRPP LSE DLLS M+ IGTDA
Sbjct: 482 PRLAPTYDNWGNSTLPVYTPGEQFVP-TLNLHEGSTRPPDYLSEVDLLSLMESHMIGTDA 540
Query: 521 TMHDHIKKLL-DRFYAIKDANTRFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKE 578
T HI+K++ +R YA K + R PT +GEALV+ YD MG ++W P R+ ME+D+
Sbjct: 541 TQAQHIEKVVGERGYARKVGDNRLMPTELGEALVLAYDRMGVADMWLPTKRAKMEADVDA 600
Query: 579 VS 580
V+
Sbjct: 601 VA 602
>gi|195345123|ref|XP_002039125.1| GM17356 [Drosophila sechellia]
gi|194134255|gb|EDW55771.1| GM17356 [Drosophila sechellia]
Length = 1251
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 304/714 (42%), Positives = 418/714 (58%), Gaps = 38/714 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS R REG S YNK+++F +RG+ M+MTSV+GH
Sbjct: 1 MKYLNVAEKNDAAKTIAGLLSNGAAHR-REGYSVYNKVFDFEALVRGKNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M+L F Y+ W + DP L+ APV+K V D + IK+TLE E R CQ L++W DCDRE
Sbjct: 60 MMQLAFQVSYKNWRTVDPRSLFDAPVKKGVSADYEPIKRTLEREVRGCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+I+VCRA+ ++ + RA FS + + +A+Q L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIIDVCRAIKPNIPVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A SE FW
Sbjct: 180 RTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
I H ++ T F+W R LFD + +C+ EP A V V + K K+ P PL
Sbjct: 237 IKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V+ Q GH
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALAPLVEMQTGHR 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +AQR+++ NP +G D+AHPPIHPTK + + ++YELVVRHF
Sbjct: 357 DWGAFAQRVIEWGP----NPRNGNKSDQAHPPIHPTKLAEN---LQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y +GQ+F
Sbjct: 410 LACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYENGQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y P
Sbjct: 470 PTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLEKGFLVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---- 601
IG L GYD M L KP LR+ E D+K + G K VL + + K +
Sbjct: 530 GVIGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLTEQIVKYKQSYQQIT 589
Query: 602 ---------LDARLKKVKLLEAMGIFFERWSGGEDQQAAG----EVVRQCGICQESNMVL 648
+ AR+ + + G GG D + + QC C E+ + L
Sbjct: 590 DKITAMDAKISARINETPAANSAG------QGGADGSGPSLGIIQSIFQCPKCNEAPLAL 643
Query: 649 K-KSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKF 701
K K +GC FP C+NAVWLP +A+V C +C G +++F+
Sbjct: 644 KPKKNQQGWYIGCNNFPDCKNAVWLPTECKDASVLDECCPTCGDG-YRMLKFRL 696
>gi|195580189|ref|XP_002079938.1| GD24215 [Drosophila simulans]
gi|194191947|gb|EDX05523.1| GD24215 [Drosophila simulans]
Length = 857
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 305/714 (42%), Positives = 419/714 (58%), Gaps = 38/714 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS R REG S YNK+++F +RG+ M+MTSV+GH
Sbjct: 1 MKYLNVAEKNDAAKTIAGLLSNGAAHR-REGYSVYNKVFDFEALVRGKNAKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M+L F Y+ W + DP L+ APV+K V D + IK+TLE E R CQ L++W DCDRE
Sbjct: 60 MMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGADYEPIKRTLEREVRGCQGLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+I+VCRA+ ++ + RA FS + + +A+Q L P++ +DAVD R E+DL
Sbjct: 120 GENIGYEIIDVCRAIKPNIPVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRTELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A SE FW
Sbjct: 180 RTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFVSEPFWK 236
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLKYPPYPL 305
I H ++ T F+W R LFD + +C+ EP A V V + K K+ P PL
Sbjct: 237 IKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVKPKHKWRPTPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V+ Q GH
Sbjct: 297 DTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALAPLVEMQTGHR 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +AQR+++ NP +G D+AHPPIHPTK + + ++YELVVRHF
Sbjct: 357 DWGAFAQRVIEWGP----NPRNGNKSDQAHPPIHPTKLAEN---LQGNEARVYELVVRHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y +GQ+F
Sbjct: 410 LACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYENGQRFE 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y P
Sbjct: 470 PTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLDKGFLVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---- 601
IG L GYD M L KP LR+ E D+K + G K VL + + K +
Sbjct: 530 GVIGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLTEQIAKYKQSYQQIT 589
Query: 602 ---------LDARLKKVKLLEAMGIFFERWSGGED----QQAAGEVVRQCGICQESNMVL 648
+ AR+ + + G GG D Q + + QC C E+ + L
Sbjct: 590 DKITAMDAKISARINETPPANSAG------QGGADGSGPSQGIIQSIFQCPKCNEAPLAL 643
Query: 649 K-KSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKF 701
K K +GC FP C+NAVWLP +A+V C +C G +++F+
Sbjct: 644 KPKKNQQGWYIGCNNFPDCKNAVWLPTECKDASVLDECCPTCGDG-YRMLKFRL 696
>gi|47211975|emb|CAF95297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 984
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/782 (40%), Positives = 443/782 (56%), Gaps = 127/782 (16%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK ++ I+S N R REG S++NKIYEF Y + GQ + MTSV+GHL+
Sbjct: 11 VLCVAEKNDAAKGISEIMS-NGRFRRREGMSKFNKIYEFEYHLLGQNVTVAMTSVSGHLL 69
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L+F ++KWHSC+P L+ A V K+ P++ IK+TLE+E ++CQ LV+W DCDREGE
Sbjct: 70 ALEFKAPFQKWHSCNPVILFDAEVEKYCPDNMVQIKRTLEKEVKQCQLLVIWTDCDREGE 129
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I+VC+AV ++ + RA+FS + I +A L +P+ +DAVD RQE+DLRI
Sbjct: 130 NIGFEIIDVCKAVKSNIQVLRAKFSEITPNSIRRACSTLTEPDSNVSDAVDVRQELDLRI 189
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
VL HE EE
Sbjct: 190 --------------------------VL----------------------HEVEE----- 196
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
T FSW R LF++T+ +++Y++C++ P ATVT V + K K+ P PL T+E
Sbjct: 197 -------DTVEFSWKRNRLFNHTACLVLYQICMENPIATVTSVTSKPKSKWRPLPLDTVE 249
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR ++S++ TMK+AE LY GFISYPRTET+ F L +V+EQ WG
Sbjct: 250 LEKLASRKLKISAKETMKIAEKLYTQGFISYPRTETNIFPKTLALGSLVEEQTQSSVWGT 309
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+LD G +P G D+AHPPIHPT+ SS + +LYE +VRHFLACV
Sbjct: 310 FAQRVLDQPGG--PSPRQGKKSDQAHPPIHPTRHSSS---LQGNEGRLYEFIVRHFLACV 364
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A+G ET+V+++IA E FS SG +I+A+NYLDVY ++ W VIP Y G QF PT +
Sbjct: 365 SQDALGQETVVDVDIAQEKFSASGLMIIARNYLDVYPYDRWSTKVIPVYEQGSQFQPTAI 424
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH-------DHIKKLLDRFYAIKDANTR 542
+ G T PP LL+EADL++ M+K GIG + HI+ + R Y ++ R
Sbjct: 425 EMVDGQTSPPQLLTEADLIALMEKHGIGRLQWLFLHGCNPCGHIETIKSRMYVGLTSDQR 484
Query: 543 FAPTNIGEALV------------------------MGYDDMGYELWKPNLRSMMESDMKE 578
F P +G LV +GY+ MGYE+ KPNLR+ +E+D+K
Sbjct: 485 FLPGELGMGLVEGAYALRGTKTGLVWLVQMLTRIGLGYNSMGYEMSKPNLRAELEADLKL 544
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLK------------------------KVKLLEA 614
VS G K K VL + +Q+ K F+++ K ++L EA
Sbjct: 545 VSEGRKDKRSVLGHHIQKYKTVFIESVQKAKKWVVVTDVGQTEAGMLSDLVCCSLRLDEA 604
Query: 615 MGIFF-ERWSGGEDQQAAGEV---VRQCGICQESNMVLKKSRDGN-LMVGCLAFPQCRNA 669
+ + E+QQ E+ VR+C C +MVLKK R+GN + C+ +P C++A
Sbjct: 605 LSPYLGAAQEITEEQQQDMEIPLPVRKCPHCGR-DMVLKKKREGNGKYLTCVGYPACKSA 663
Query: 670 VWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLI 729
VW P +V E + + C +C P PV++++FKFR+ +PP + +GCIGGCDETLR+++
Sbjct: 664 VWFPDTVLEVSRDESVCPTCQPAPVHMLKFKFRRGSLPPVMPLEFVGCIGGCDETLREVL 723
Query: 730 EI 731
++
Sbjct: 724 DL 725
>gi|427782477|gb|JAA56690.1| Putative dna topoisomerase iii beta [Rhipicephalus pulchellus]
Length = 669
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/645 (46%), Positives = 404/645 (62%), Gaps = 22/645 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AK++A +LS+ + R REG S+YNKIYEF+Y I C M+MTSV+GH
Sbjct: 1 MRVLNVAEKNDAAKNIAELLSQGRFQR-REGLSKYNKIYEFDYRIFNNMCKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKD-IKKTLEEEARRCQWLVLWLDCDR 126
L+ LDF YRKWHSC P++L+ APV + + K + IK+TLE E R C L++W DCDR
Sbjct: 60 LLNLDFVSGYRKWHSCAPSELFDAPVAEICTDQKYELIKQTLEREVRYCDTLIIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE+I VCR V +L + RARFS + + +AV NL DP+ AV R+E+D
Sbjct: 120 EGENIGFEIIGVCRKVKPNLRVYRARFSEITPAAVTRAVANLTDPDPRLNAAVYVRRELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR QT+ LK + D ++SYG CQFPTLGFVVERY I E FW
Sbjct: 180 LRIGAAFTRLQTLRLKREFPQELGDR---LVSYGSCQFPTLGFVVERYRAILNFVPEPFW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ--EPTATVTKVRQQEKLKYPPYP 304
I +H + A FSW R LFDY ++YE C+ P A V +V+ + K K+ P P
Sbjct: 237 KIEMNHSKDGIKAEFSWKRHRLFDYHVCFLLYERCLHGNPPQAKVVEVKSKPKSKWRPQP 296
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
+ T+ELEK ASR RMS++ TM+VAE LY GFISYPRTET F NL +V+ Q
Sbjct: 297 MDTVELEKLASRKLRMSAKDTMQVAEKLYTDGFISYPRTETTKFPPDLNLRPLVEAQAQD 356
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P WG +A+RLL GL P G D+AHPPIHP K + G + ++YELVVRH
Sbjct: 357 PRWGDFARRLLQD--GL--TPRQGNKTDQAHPPIHPVKSAPG---LDGNAKRVYELVVRH 409
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLAC+S+ A G ET VE+++ GE F +G VI A+NYL+VY ++ W G IP+Y G+ F
Sbjct: 410 FLACLSKDAEGKETTVEVDLNGERFIATGLVIFARNYLEVYIYDKWNGKEIPSYQEGECF 469
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+P ++ + G T PPPLL EADL++ M+K GIGTDAT +HI+ + +R Y +
Sbjct: 470 VPDSVKMAEGETTPPPLLREADLIALMEKHGIGTDATHAEHIETVKNRLYVALTGDGYLV 529
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
P +G LV GYD MG E+ KP+LR+ +E+D+K++ G K+ DVL + + + F D+
Sbjct: 530 PGELGMGLVEGYDSMGLEMSKPHLRAELEADLKKICEGVKNAKDVLRHQVNLYRDVFYDS 589
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQ----CGICQESN 645
+ KL EA+ +R+ G + ++ RQ G Q+SN
Sbjct: 590 ERQIKKLGEAL----KRYLGTGQRSSSPPAPRQNNARAGSVQDSN 630
>gi|281201507|gb|EFA75716.1| DNA topoisomerase III [Polysphondylium pallidum PN500]
Length = 1103
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 308/692 (44%), Positives = 426/692 (61%), Gaps = 32/692 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS-IRGQ-PCHMLMTSVT 65
+ +LNVAEKPS A+ ++ IL+ + R R+G S+YN ++E+ S + GQ M+ TSV
Sbjct: 328 MKILNVAEKPSAAEEISTILAGRRPQR-RDGFSKYNCVWEYKCSPVLGQNDVDMVFTSVL 386
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVP-EDKKDIKKTLEEEARRCQWLVLWLDC 124
GHLM D Y W SCDP DL+ AP+ K + E+ ++ KTL+ E RRC L+LWLDC
Sbjct: 387 GHLMTTDVVPPYTNWTSCDPIDLFEAPIHKFIDGENSTNLDKTLKREGRRCDTLILWLDC 446
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENIAFEVIE RAVN ++ + RA FS++I EI +A+ NL PN+ + AVD R E
Sbjct: 447 DREGENIAFEVIESVRAVNRNIRIYRAHFSSIIPAEIKRAISNLAQPNKNDSMAVDCRIE 506
Query: 185 IDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
IDLR+GA+FTRFQ+ L++ F I+ DD+ + SYGPCQFPTLGFVVER I+ E
Sbjct: 507 IDLRLGAAFTRFQSRYLRSKFEIN---DDQPI--SYGPCQFPTLGFVVERALRIERFVPE 561
Query: 244 EFWTINCSHKS----EEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+FW I+ SH+ E TA F W R LF+ A I YE C+ P ATV V +E +
Sbjct: 562 DFWVIDVSHQKKADGEMRTADFGWKRKRLFELAPAFIFYEQCLDNPLATVVDVNVKEN-R 620
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
Y P PL+TIEL+K AS+ R+SS+ TMK+AE+LY GFISYPRTETDSF T+ G+++
Sbjct: 621 YRPVPLTTIELQKLASKKLRISSDETMKLAEELYNKGFISYPRTETDSFLPETDFMGLIR 680
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
Q + WG YAQ LL+ G + P G H+D +HPPIHPT ++ S LYE
Sbjct: 681 LQTDNQKWGGYAQSLLN---GGFVRPKEGKHNDNSHPPIHPTGAANA---LSGKQANLYE 734
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
+ R FLAC S+ ++ +T V I+IA E FS +G +++ + YL+VY ++ ++PTYV
Sbjct: 735 FICRRFLACCSKESIYGQTTVTIDIADETFSATGSMMIQQGYLEVYPYDKRYDKILPTYV 794
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ F P+ L L+ T P LSE +LLS MD IGTDATM HIKK++DR Y IK+
Sbjct: 795 VGETFTPSRLELNKSRTVAPKPLSEPELLSEMDNNKIGTDATMAQHIKKIIDRNYVIKNE 854
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
RF PT++G+AL++GYD MG+ KP LR+ +E+D+ +++ GN+ K DVL + +QQ K
Sbjct: 855 ENRFIPTDLGKALIIGYDSMGFGFSKPALRAKIEADVHKIATGNRKKEDVLKDTIQQYKT 914
Query: 600 CFLDARLKKVKLLEAMGIFFERW--SGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
F+ AR ++ I F + G + + +CG C + + LK + D +
Sbjct: 915 LFIQAR----EMSHMFDITFSNYFRPYGSQFRILQANLSKCGKCN-NKLDLKSTDDARRV 969
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
+ C C + LP V + TC C
Sbjct: 970 LQC---KTCLASHMLP-KVGDIVPYDGTCPLC 997
>gi|196002305|ref|XP_002111020.1| hypothetical protein TRIADDRAFT_22834 [Trichoplax adhaerens]
gi|190586971|gb|EDV27024.1| hypothetical protein TRIADDRAFT_22834 [Trichoplax adhaerens]
Length = 625
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/610 (45%), Positives = 392/610 (64%), Gaps = 12/610 (1%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+LNVAEK AKS++ I+S+ L +EG S+YNKI+EF+++I C M+MTSV+GHL+
Sbjct: 5 ILNVAEKNDAAKSLSRIMSRG-NLTKKEGLSKYNKIFEFDFNILNSSCRMVMTSVSGHLL 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF ++KW+SC P +L+ A V+K IKKTLE E R C L++W D DREGE
Sbjct: 64 SMDFLSNFQKWNSCLPVELFEAQVQKFCTGTNIPIKKTLEREIRNCNTLIIWTDGDREGE 123
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI E+I VC+AV + + RARFS + R I +A +NL P+ +DAVD RQE+DLRI
Sbjct: 124 NIGHEIISVCKAVKPRIEIHRARFSEITYRSIMRACENLTRPDNLQSDAVDVRQELDLRI 183
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ + D ++SYG CQFPTLGFVV R+ EI A SE+F+ I
Sbjct: 184 GAAFTRFQTLRLQRIFAAHLKDQ---LISYGSCQFPTLGFVVSRFKEIDAFISEDFYKIK 240
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+ +E+G F+W R LF + +I+++C++ P ATVT V + K K+ P PL T+E
Sbjct: 241 VTLDTEDGVIDFNWKRVRLFYRHACEVIHQICLENPLATVTSVVSKPKSKWRPLPLDTVE 300
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
EK SR ++ ++ MK+AE LY GFISYPRTET+ F S NL +++ Q +WG
Sbjct: 301 FEKLVSRKLKIGAKEAMKIAEKLYNRGFISYPRTETNQFPSSMNLRQLIEYQTESSEWGD 360
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A+ L++ P G D AHPPIHPTKF++ + ++YELVVRHFLAC
Sbjct: 361 FAKSLVERGP----TPRWGKKTDNAHPPIHPTKFTNT---LQGNEKRIYELVVRHFLACC 413
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G+ETIVEI IA E+F+ G +I+AKNYL+VY ++ W +P +V GQQF PT +
Sbjct: 414 SQDAEGSETIVEITIARELFAVQGLIIIAKNYLEVYPYDRWSDKPLPAFVEGQQFQPTNI 473
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
++ G T PPPLL+E++L+ MDK GIGTDAT +HI+ + R Y + N RF P +G
Sbjct: 474 SMVEGRTEPPPLLTESNLIDLMDKNGIGTDATHAEHIETIKARKY-VAVQNGRFVPGELG 532
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MG+E+ KP LR+ +E+ +K + G ++K +VL + + K F+ A +
Sbjct: 533 IGLVEGYDSMGFEMSKPKLRAELEAGLKRICEGTRNKTEVLQEQITKYKEVFVKAAAEAT 592
Query: 610 KLLEAMGIFF 619
KL A+ +
Sbjct: 593 KLDVALSKYL 602
>gi|353233151|emb|CCD80506.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1058
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 306/735 (41%), Positives = 416/735 (56%), Gaps = 65/735 (8%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LNVAEK AK+++ ILS+ G REG S++NKIYEF ++ GQ M+MTSV+GH
Sbjct: 26 MKILNVAEKNDAAKNISEILSRG-GYHRREGISKFNKIYEFPMNLNGQNVMMVMTSVSGH 84
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L DF Y+ WHSC+P L+ AP+ K V +D + IK+TL+ E R CQ L++W DCDRE
Sbjct: 85 LTNYDFLPNYKSWHSCNPMVLFDAPIVKQVLKDYEPIKQTLQREVRSCQKLIIWTDCDRE 144
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI EVI+VCR + ++ + RARFS + +H+AV L P+ + AVD RQE+DL
Sbjct: 145 GENIGVEVIDVCREIKPNIEILRARFSEITPAAVHRAVDRLTIPDYNASTAVDVRQELDL 204
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQT+ L+ +++D ++SYG CQFPTLGFVVER+ E+ SE FW
Sbjct: 205 RIGAAFTRFQTLRLRRVFPQALSDQ---LISYGSCQFPTLGFVVERFREVDQFVSEPFWR 261
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I + +E T F W RG LFD YE Q + +V ++ K K+ P L T
Sbjct: 262 IVVTVSRDEKTTEFQWQRGRLFDQDCCRAYYEHLNQNRYGQIVEVIKRPKTKWRPTALDT 321
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ELEK ASR +M +++ M++AE LY GFISYPRTET F +L +V QI W
Sbjct: 322 VELEKLASRKLQMGAKYAMQLAERLYNKGFISYPRTETKIFPPDLDLKSLVHVQINDSRW 381
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
+A R+L+ NP +G DKAHPPIHP K G+S D +LYELV RHFLA
Sbjct: 382 SDFATRILERGP----NPKNGKSSDKAHPPIHPLKV--GDS-LQGDEARLYELVTRHFLA 434
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C+S A GAETIV + I GE+F + G +ILA NYL+VY ++ W +P + G+ +P
Sbjct: 435 CLSTDAEGAETIVRLCIDGELFESKGLMILALNYLEVYIYDRWAEKDMPVFQLGEWILPD 494
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+ + +G T PPPLL+EADL+S MD+ GIGTDAT +HI+ + R Y + N P
Sbjct: 495 NIQVLTGQTCPPPLLTEADLISLMDRHGIGTDATHAEHIETIKQRLYVGLEQNKFLVPGQ 554
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G LV GYD MG+E+ KPNLRS E+D+K + G K+K +VL + L + K F A +
Sbjct: 555 LGMGLVEGYDSMGFEMSKPNLRSEFEADLKLICEGRKTKEEVLHHHLNKYKELFRLALNQ 614
Query: 608 KVKLLEAMGIFFERWS------------------------GGEDQQAAGEVVRQCGICQE 643
L A+ + E+ + G VV C C
Sbjct: 615 ASFLDRALALRLEQEAENVQNISGSVGEMASFAASNNTIDGHNQSNVLNPVVAFCPTCH- 673
Query: 644 SNMVLKKSR-------------------------DGNLMVGCLAFPQCRNAVWLPGSVSE 678
S +VL++ R +G + C +P CR A+W P SV
Sbjct: 674 SGLVLRQKRSALRPLTTSSNLSNNSGSNEVNQTSNGGWFLSCSGYPNCRYAIWFPDSVIH 733
Query: 679 AAVTT----NTCNSC 689
V + NTCN C
Sbjct: 734 VRVLSETNENTCNRC 748
>gi|158299059|ref|XP_319175.3| AGAP010028-PA [Anopheles gambiae str. PEST]
gi|157014186|gb|EAA13910.3| AGAP010028-PA [Anopheles gambiae str. PEST]
Length = 1025
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 307/755 (40%), Positives = 427/755 (56%), Gaps = 26/755 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ LNVAEK AK++AG+LS+ R REG S YNKIYEF+Y++ GQ M+MTSV+GH
Sbjct: 29 MKYLNVAEKNDAAKTIAGLLSRGSSQR-REGYSPYNKIYEFSYNLHGQSIQMIMTSVSGH 87
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ +F +R WHSC P DL+ APVRK+ PE + IKKTLE E R C L++W DCDRE
Sbjct: 88 LLTHEFLPSFRGWHSCSPEDLFDAPVRKNCPEQYEKIKKTLEREVRGCSALIIWTDCDRE 147
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+IEVCRAV L + RA+FS + I +A++NLV P+ DAV+ R E+DL
Sbjct: 148 GENIGYEIIEVCRAVKPQLRVFRAKFSEITAPSIKRAIENLVQPDARQNDAVNVRSELDL 207
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQT+ L+ ++++ ++SYG CQ PTLGFV +RY EI+ + FW
Sbjct: 208 RIGAAFTRFQTLRLQKSFPQDISNN---LVSYGSCQIPTLGFVAQRYKEIENFIPQTFWK 264
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I +H ++ T F W R LFD +C PTA V V Q+ K K+ P P+ T
Sbjct: 265 IKLTHTIDDLTVEFHWSRNRLFDKQCCEAYLMLCQTNPTAKVVNVTQKPKNKWRPTPMDT 324
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ELEK SR +M+++ M +AE LY G ISYPRTET+ F+ L +VQ Q+ W
Sbjct: 325 VELEKLGSRKLKMNAKQVMTIAEKLYTQGIISYPRTETNMFTGDMKLAPLVQAQVASDQW 384
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G +A+++L NP +G D+AHPPIHPTK + S D +++YEL+ RHFLA
Sbjct: 385 GSFAEKVLQWGV----NPRNGKKSDQAHPPIHPTKLPTN---LSGDEWRVYELIARHFLA 437
Query: 428 CVSQPAVGAETI-VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
CVS+ A G+ETI + E F+ SG I +NYL+VY ++ W I +Y G F P
Sbjct: 438 CVSRDATGSETIVNVVVAEEEEFTASGLCIHERNYLEVYPYDRWNAKEIHSYQVGHTFEP 497
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T L L G T P +L+EADL++ M+K GIGTDAT +HI + +R Y + P
Sbjct: 498 TELGLHEGSTTAPNMLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGERDRGFLVPG 557
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LV GY+ M L P LR+ +E+D+K V G K+ DVLA + + K +
Sbjct: 558 TLGMGLVEGYEMMELRLAHPELRAGLEADLKLVCEGRKNPNDVLAEQIAKYKEVYRIMSQ 617
Query: 607 KKVKLLEAMGIFFER--------WSGGEDQQAAGEVVRQCGICQES--NMVLKKSRDGN- 655
K L AMG + +R+ C + M L+ RD +
Sbjct: 618 KARALDRAMGQRLNQTPQEPPPDAGASAATATGSAPMREVCKCPKCGHKMCLRTKRDSSG 677
Query: 656 LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHL 715
+GC+AFP+CRN +W S+ E V +TC C + + R + + +++
Sbjct: 678 YYLGCVAFPECRNNIWFDDSMREINVLDDTCARCGSKKMTVKFRSVRFYALLQSTDMDEY 737
Query: 716 GCIGGCDETLRQLIEICGTGSRIPARGRGPTASSN 750
CD+ R L I + R+ A G +SSN
Sbjct: 738 QFCIVCDDKFRNLFNINESSVRVAA---GARSSSN 769
>gi|256052304|ref|XP_002569713.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1165
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 306/735 (41%), Positives = 416/735 (56%), Gaps = 65/735 (8%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LNVAEK AK+++ ILS+ G REG S++NKIYEF ++ GQ M+MTSV+GH
Sbjct: 26 MKILNVAEKNDAAKNISEILSRG-GYHRREGISKFNKIYEFPMNLNGQNVMMVMTSVSGH 84
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L DF Y+ WHSC+P L+ AP+ K V +D + IK+TL+ E R CQ L++W DCDRE
Sbjct: 85 LTNYDFLPNYKSWHSCNPMVLFDAPIVKQVLKDYEPIKQTLQREVRSCQKLIIWTDCDRE 144
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI EVI+VCR + ++ + RARFS + +H+AV L P+ + AVD RQE+DL
Sbjct: 145 GENIGVEVIDVCREIKPNIEILRARFSEITPAAVHRAVDRLTIPDYNASTAVDVRQELDL 204
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQT+ L+ +++D ++SYG CQFPTLGFVVER+ E+ SE FW
Sbjct: 205 RIGAAFTRFQTLRLRRVFPQALSDQ---LISYGSCQFPTLGFVVERFREVDQFVSEPFWR 261
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I + +E T F W RG LFD YE Q + +V ++ K K+ P L T
Sbjct: 262 IVVTVSRDEKTTEFQWQRGRLFDQDCCRAYYEHLNQNRYGQIVEVIKRPKTKWRPTALDT 321
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ELEK ASR +M +++ M++AE LY GFISYPRTET F +L +V QI W
Sbjct: 322 VELEKLASRKLQMGAKYAMQLAERLYNKGFISYPRTETKIFPPDLDLKSLVHVQINDSRW 381
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
+A R+L+ NP +G DKAHPPIHP K G+S D +LYELV RHFLA
Sbjct: 382 SDFATRILERGP----NPKNGKSSDKAHPPIHPLKV--GDS-LQGDEARLYELVTRHFLA 434
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C+S A GAETIV + I GE+F + G +ILA NYL+VY ++ W +P + G+ +P
Sbjct: 435 CLSTDAEGAETIVRLCIDGELFESKGLMILALNYLEVYIYDRWAEKDMPVFQLGEWILPD 494
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+ + +G T PPPLL+EADL+S MD+ GIGTDAT +HI+ + R Y + N P
Sbjct: 495 NIQVLTGQTCPPPLLTEADLISLMDRHGIGTDATHAEHIETIKQRLYVGLEQNKFLVPGQ 554
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G LV GYD MG+E+ KPNLRS E+D+K + G K+K +VL + L + K F A +
Sbjct: 555 LGMGLVEGYDSMGFEMSKPNLRSEFEADLKLICEGRKTKEEVLHHHLNKYKELFRLALNQ 614
Query: 608 KVKLLEAMGIFFERWS------------------------GGEDQQAAGEVVRQCGICQE 643
L A+ + E+ + G VV C C
Sbjct: 615 ASFLDRALALRLEQEAENVQNISGSVGEMASFAASNNTIDGHNQSNVLNPVVAFCPTCH- 673
Query: 644 SNMVLKKSR-------------------------DGNLMVGCLAFPQCRNAVWLPGSVSE 678
S +VL++ R +G + C +P CR A+W P SV
Sbjct: 674 SGLVLRQKRSALRPLTTSSNLSNNSGSNEVNQTSNGGWFLSCSGYPNCRYAIWFPDSVIH 733
Query: 679 AAVTT----NTCNSC 689
V + NTCN C
Sbjct: 734 VRVLSETNENTCNRC 748
>gi|355753822|gb|EHH57787.1| DNA topoisomerase 3-alpha, partial [Macaca fascicularis]
Length = 839
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 278/634 (43%), Positives = 398/634 (62%), Gaps = 22/634 (3%)
Query: 138 VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQ 197
+C AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLRIGA+FTRFQ
Sbjct: 1 LCSAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQ 60
Query: 198 TMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG 257
T+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I +H ++G
Sbjct: 61 TLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDG 117
Query: 258 TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRY 317
F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+ELEK ASR
Sbjct: 118 IVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRK 177
Query: 318 FRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDH 377
R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG +AQ +L+
Sbjct: 178 LRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILER 237
Query: 378 AAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAE 437
RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC SQ A G E
Sbjct: 238 GGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLACCSQDAQGQE 291
Query: 438 TIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTR 497
T VEI+IA E F G VILA+NYLDVY ++ W ++P Y G +F P+T+ + G T
Sbjct: 292 TTVEIDIAQERFVAHGLVILARNYLDVYPYDHWSDKILPVYERGSRFQPSTVEMVDGETS 351
Query: 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G LV GYD
Sbjct: 352 PPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYD 411
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGI 617
MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K KL EA+
Sbjct: 412 SMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQ 471
Query: 618 FFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
+F + Q+ A E +R+C C + +MVLK ++G + C+ FP+CR+A+WLP
Sbjct: 472 YFGNGTELAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECRSAMWLP 530
Query: 674 GSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICG 733
SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCDETLR+++++
Sbjct: 531 DSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDETLREILDL-- 588
Query: 734 TGSRIPARGRGPTA------SSNNGQQSNHRQRA 761
SR P R P+ S N S H Q A
Sbjct: 589 RFSRGPPRAIQPSGHLQASQSLNRMDNSQHPQPA 622
>gi|417412874|gb|JAA52796.1| Putative dna topoisomerase iii alpha, partial [Desmodus rotundus]
Length = 837
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 276/626 (44%), Positives = 389/626 (62%), Gaps = 18/626 (2%)
Query: 138 VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQ 197
+C AV L + RARFS + R I A +NL +P+Q +DAVD RQE+DLRIGA+FTRFQ
Sbjct: 1 LCSAVKPTLQVLRARFSEITPRAIRMACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQ 60
Query: 198 TMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG 257
T+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I +H +G
Sbjct: 61 TLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHRDG 117
Query: 258 TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRY 317
FSW R LF++T+ +++Y +C+++P ATV +V + K K+ P L T+ELEK ASR
Sbjct: 118 IVEFSWKRHRLFNHTACLVLYHLCMEDPMATVVEVSSKAKSKWRPQALDTVELEKLASRK 177
Query: 318 FRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDH 377
R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG +AQ +L+
Sbjct: 178 LRINAKETMRIAEKLYTQGYISYPRTETNVFPKDLNLTALVEQQTPDPHWGSFAQSILER 237
Query: 378 AAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAE 437
RN G D+AHPPIHPTK++S D +LYE +VRHFLAC SQ A G E
Sbjct: 238 GGPTPRN---GNKSDQAHPPIHPTKYTSS---LQGDEQRLYEFIVRHFLACCSQDAQGQE 291
Query: 438 TIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTR 497
T VEI+IA E F G +ILA+NYLDVY ++ W +P Y G +F P+T+ + G T
Sbjct: 292 TTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSRFQPSTMQMVDGETS 351
Query: 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G LV GYD
Sbjct: 352 PPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYD 411
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGI 617
MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K KL EA+
Sbjct: 412 AMGYEMSKPDLRAELEADLKLICEGKKDKCVVLRQQVQKYKQVFIEAVAKAKKLDEALSQ 471
Query: 618 FFERWSGGEDQQAAG----EVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
+F + Q+A E VR+C C + +MVLK + G + C FP+CR+ +W P
Sbjct: 472 YFGEGAEVAQQEAIYPAMLEPVRKCPQCNK-DMVLKTKKSGGFYLSCTGFPECRSVMWFP 530
Query: 674 GSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEI-- 731
SV EA+ + C C P PVY ++FKF++ +PP + +GCIGGCDETL++++ +
Sbjct: 531 DSVLEASRDASVCPVCQPHPVYRLKFKFKRGSLPPTMPLEFIGCIGGCDETLKEILGLRF 590
Query: 732 -CGTGSRIPARGRGPTASSNNGQQSN 756
GT +P + P+ G+ SN
Sbjct: 591 SQGTPRAVPTASQ-PSGYLQAGRSSN 615
>gi|255072381|ref|XP_002499865.1| predicted protein [Micromonas sp. RCC299]
gi|226515127|gb|ACO61123.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 639
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/641 (45%), Positives = 393/641 (61%), Gaps = 33/641 (5%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
PI VLNVAEKPSVAK V+ +LS N G R G S+YN I+EF Y++ GQ C M+ TSVTG
Sbjct: 3 PIRVLNVAEKPSVAKEVSRVLS-NGGCTNRRGASQYNAIWEFPYTVMGQRCDMVFTSVTG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYH-APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
H+M LDF +R W++C+P +L A V K V + K+ + + L +EA RC WL+LWLDCD
Sbjct: 62 HVMGLDFPPSHRGWNTCNPRELIDGARVVKQVDKGKEKVAENLRKEASRCAWLILWLDCD 121
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGENIAFEV+++C+ + RARFSAL ++ +A+ LVDPN + AVD RQE+
Sbjct: 122 REGENIAFEVMDICKQSKPGIRCLRARFSALSHNDVTRALARLVDPNPHESAAVDMRQEL 181
Query: 186 DLRIGASFTRFQTMLLKNFHI-----DSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
DLR G++FTRF T+LL+ + + D + ++SYGPCQFPTLGF+V+R W+I AH
Sbjct: 182 DLRFGSAFTRFNTLLLQRSGVAARLPGADADGKGNIVSYGPCQFPTLGFIVQRKWDIDAH 241
Query: 241 ESEEFWTINCSHKSEEG----TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
E FW I SH +G A F W R LFD A ++ A VT+ E
Sbjct: 242 VPENFWKIKLSHAVGQGREASIAEFEWSRDRLFDEHLATALFAAVRGAGQAVVTREGGTE 301
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K+PP+PL+T+E++KR +R R+S E MK+AE+LYQAGFISYPRTETD F +
Sbjct: 302 SKKWPPHPLNTLEMQKRLNRAIRVSPEQIMKLAEELYQAGFISYPRTETDKFPHDFDYRT 361
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE--SRWSQDH 414
+++ HP +G +A L + G +R P GGHDDKAHPPI+PTK +S + + W +
Sbjct: 362 SIEQLHPHPKFGFHAINL---SGGRFRQPPGGGHDDKAHPPIYPTKLASTQDYASWRNRN 418
Query: 415 YKL---YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY------ 465
+L YE V RHFLA S PAV +T VEI++ GE F +G +I NYL+VY
Sbjct: 419 SRLIDVYEFVCRHFLASCSLPAVAHKTTVEIDMGGERFKATGNMIKELNYLEVYGKGPAG 478
Query: 466 ------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTD 519
++ W IP+YV GQ+F PT L+L G T+PPPLLSE DLLS M+ IGTD
Sbjct: 479 GPVLQPSYDGWSSNTIPSYVVGQRFQPTELSLRPGRTQPPPLLSETDLLSKMEAHQIGTD 538
Query: 520 ATMHDHIKKLL-DRFYAIKDANTRFAPTNIGEALVMGYDDMGYE-LWKPNLRSMMESDMK 577
AT HI+K++ +R YA K + R PT +GEAL GY MG +W P+LR+ E+D
Sbjct: 539 ATQAQHIEKVVGERGYARKVGDNRLMPTELGEALCEGYARMGLAGMWLPHLRAETEADTG 598
Query: 578 EVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIF 618
V+ G + L N + + K +L++A+ F
Sbjct: 599 RVARGEMNATVALRNAIGPAIDAYRGLEANKQRLVDAVTEF 639
>gi|145535065|ref|XP_001453271.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420982|emb|CAK85874.1| unnamed protein product [Paramecium tetraurelia]
Length = 895
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/615 (44%), Positives = 394/615 (64%), Gaps = 20/615 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
I VLNVAEKPSVA+S+A +L+++ I E +S YNK+++FN+ + Q M MTSVTGH
Sbjct: 13 IRVLNVAEKPSVARSIATVLARDHT--IEETKSPYNKLFKFNFKLGEQDAEMWMTSVTGH 70
Query: 68 LMELDFDERYRKWHSCDP-ADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
L L + ++Y+KW DP L A + + +K+ +++ L+ A++C L+LWLDCDR
Sbjct: 71 LKNLKYPKQYQKWDKWDPLIILKDAEIENVISYEKRFLEENLQRFAKQCSQLILWLDCDR 130
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENIAFEV+EVC+A N + + RA FSA+ +I +A++NL P++ +++V ARQEID
Sbjct: 131 EGENIAFEVLEVCKATNPQIKVHRAHFSAVTYVDIKKALENLQQPDENLSNSVLARQEID 190
Query: 187 LRIGASFTRFQTMLL-KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
LRIGASFTRFQT+LL + F++ S ++SYGPCQ PTLGFVV+R EI + E+F
Sbjct: 191 LRIGASFTRFQTLLLQQQFNLSS-------IVSYGPCQIPTLGFVVQRQKEIDSFVKEKF 243
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I C ++ ++W RG++FD ++++E C E A VT V+Q+E K+ PYPL
Sbjct: 244 WFIQC---VDQTGCEYNWSRGNIFDEMIVLLLFERCFTE-QAQVTDVQQKEVQKWKPYPL 299
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
STIE EK ASR ++S+ M +AE LY G+ISYPRTET+ F NL I+++QI HP
Sbjct: 300 STIEFEKLASRKLKVSAHKAMDLAEKLYNRGYISYPRTETNKFPPTINLQNIIRDQINHP 359
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG YAQ L+ H+ + P +G DDKAHPPIHP K S + + +Y+L+ RHF
Sbjct: 360 VWGQYAQNLI-HSN--FDQPRAGNKDDKAHPPIHPVKMMSESDAQTTQEWDIYQLITRHF 416
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC S+ A G+ET + + + E F G +I KN+L++Y ++ W +P Y G I
Sbjct: 417 LACCSKNAKGSETTINLQVKEESFYKQGLIITEKNFLEIYPYDEWSQSSVPKYNIG-DII 475
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
L + +G T PP L+EA+L+ MDK GIGTDAT+H+HI + +R YAIK P
Sbjct: 476 QINLKVQNGKTSPPKPLTEAELIGMMDKNGIGTDATIHEHINTIQERDYAIKKGQI-IKP 534
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T +G ALV Y+ +G+ L KP+LR++ME M EV+ G K K +++ +++M + +
Sbjct: 535 TKLGLALVESYEVLGFTLHKPHLRALMEQRMNEVAQGVKQKNEIVEATIKEMSGILQELQ 594
Query: 606 LKKVKLLEAMGIFFE 620
KK +++ G + E
Sbjct: 595 QKKNLIIQTFGQYLE 609
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 632 GEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTP 691
E +C C + + + + GCL +PQC A++LP S+ T C C
Sbjct: 713 NEETFKCNQCHKQMKIRQSKIKNSYFFGCLGYPQCNQAIFLPDSIKSIQRTEKKCKKCNS 772
Query: 692 GPVYLIQFKFRQHEIPPGFNVNHLGCI-GGCDETLR 726
I F+ E + L C+ GC E L+
Sbjct: 773 -----ILFQTEYSENSTLQQKSQLLCLFPGCSEGLK 803
>gi|242014828|ref|XP_002428087.1| DNA topoisomerase 3-alpha, putative [Pediculus humanus corporis]
gi|212512606|gb|EEB15349.1| DNA topoisomerase 3-alpha, putative [Pediculus humanus corporis]
Length = 901
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 278/725 (38%), Positives = 419/725 (57%), Gaps = 20/725 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LNVAEK AK+++ LSK R RE S YNKIYEF + + Q C M+MTSV+GH
Sbjct: 1 MTILNVAEKNDAAKNISFFLSKGSA-RKRESLSVYNKIYEFEFKLFNQNCKMVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ F ++ W + DP+ L+ PV K ++ + L+ E + C L++W DCDRE
Sbjct: 60 LLNYCFPPTHKNWSTTDPSSLFTVPVNKFCAKENFKTQNNLKNEVKYCDTLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI FE+I+VC+ V ++ + RA+FS + + +A+ NL PN+ +DAVD R E+DL
Sbjct: 120 GENIGFEIIDVCKKVKPNIKIYRAKFSEITSASVMRAINNLEMPNKSLSDAVDVRMELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTRFQ++ L+ D+ ++ V+SYG CQFPTLGFVVER+ I SE FW
Sbjct: 180 RIGAAFTRFQSLYLQKKFPDNF---KSTVVSYGSCQFPTLGFVVERFKNISQFISEPFWR 236
Query: 248 INCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I S + F+W R +FD + ++Y+ C++ A V KV + K KY P PL
Sbjct: 237 IEVKDNSNKNLIVDFNWERNRMFDKSCCEVLYDKCIESNLAKVIKVDSKPKSKYRPKPLD 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+ELEK AS+ +++++ +K AE LY G+ISYPRTET+ F +L +VQ Q +
Sbjct: 297 TVELEKLASKKLKINAKLALKTAEKLYTQGYISYPRTETNIFPKELDLRPLVQRQTTDSN 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +A ++L NP G D+AHPPIHP K++S + ++ +YEL+VRHFL
Sbjct: 357 WGEFALKVLVDGP----NPNQGTKSDQAHPPIHPIKYASNLTGVEKN---IYELIVRHFL 409
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S+ A G ET VEI++A E+F+ G +I A+NYLDVY ++ W I Y G F P
Sbjct: 410 ACLSKNAEGIETAVEIDLANEIFTAKGLMITARNYLDVYPYDVWNAKEINLYNVGDVFKP 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
++L G T PP LL+EADL++ M+K GIGTDAT DHI+ + RFY + F P
Sbjct: 470 -AVSLVEGKTNPPELLTEADLIALMEKHGIGTDATHADHIETIKARFYVGLKNDKYFVPR 528
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LV GY+++G+E+ KPNLR+ +E+D+ ++ K DVL + + K F +
Sbjct: 529 TLGMGLVEGYNNVGFEMAKPNLRAELEADLSSITRNEKMPQDVLNKHINKYKNIFEVVKT 588
Query: 607 KKVKLLEAMGIFFERWS--GGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
L E + + + + E + + C C N ++K+ ++ + C
Sbjct: 589 NSKNLFEIINSYIQGNNPISSEKENNVPKSPMNCREC--GNPMIKEIKNNKISFSCSNKS 646
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
QC N + + +V + +T ++C C L +++ +V +GC+ GCD+
Sbjct: 647 QCLNVINISNTVKDVEITNDSCPKCGSNSKLLKFNFKNKNKNR---SVKDIGCLNGCDKN 703
Query: 725 LRQLI 729
L ++
Sbjct: 704 LLNVL 708
>gi|145526124|ref|XP_001448873.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416439|emb|CAK81476.1| unnamed protein product [Paramecium tetraurelia]
Length = 859
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/615 (44%), Positives = 386/615 (62%), Gaps = 20/615 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
I VLNVAEKPSVA+S+A +LSK+ RI E +S +NK+++ +Y ++ M +TSVTGH
Sbjct: 13 IKVLNVAEKPSVARSIANVLSKDH--RIEETKSPFNKLFKLDYRLKDVEVEMWITSVTGH 70
Query: 68 LMELDFDERYRKWHSCDPAD-LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
L L + ++Y+ W DP L A + ++ DK++++ L+ A C L+LWLDCDR
Sbjct: 71 LKSLKYPQKYQSWEKWDPIIILKEAEIENNISTDKQNLELNLKNFASICNRLILWLDCDR 130
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENIAFEV+EVCR N ++ + RA FSA+ ++ +A+ L P+Q +++V ARQEID
Sbjct: 131 EGENIAFEVMEVCREANPNIQVNRAHFSAVTYVDVRRALDTLKYPDQNLSNSVIARQEID 190
Query: 187 LRIGASFTRFQTMLL-KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
LRIGASFTRFQT+LL K F++ S ++SYGPCQ PTLGFVV+R EI + E+F
Sbjct: 191 LRIGASFTRFQTLLLQKQFNLSS-------IVSYGPCQIPTLGFVVQRQKEIDSFVKEQF 243
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I ++ ++W R HLFD +++E C QE +ATV V+Q++ K+ PYPL
Sbjct: 244 WFI---QSEDDQKCIYNWDRTHLFDEFIVALLFERCYQE-SATVINVQQKDVQKWKPYPL 299
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
TIE EK AS+ R+S+ M++AE LY G+ISYPRTET+ F NL I+++Q HP
Sbjct: 300 CTIEFEKLASKKLRISAHKAMELAERLYNKGYISYPRTETNKFPPTINLQTIIRDQQNHP 359
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG YA LL+ A + P +G DDKAHPPIHP K ++ + +Y+L+ RHF
Sbjct: 360 VWGEYATNLLNFA---FEYPKAGNKDDKAHPPIHPVKMMIENEAQNKQEWDVYQLITRHF 416
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC S+ A G+ET + + I E FS SG VI KNYL++Y +E W +P Y G I
Sbjct: 417 LACCSKNAKGSETTITLQINDETFSKSGLVIKEKNYLEIYIYEEWSQSQVPNYQQGDS-I 475
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
LTL G T PP ++EA+L+ MDK GIGTDAT+H+HI + DR YA K P
Sbjct: 476 KIKLTLQKGSTSPPKPMTEAELIGLMDKNGIGTDATIHEHINTIQDREYATKRGQI-IKP 534
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T IG ALV Y+ +G+ L +P LR++ME M EV++G K K+ ++ + +M +
Sbjct: 535 TKIGLALVESYEILGFTLHQPFLRAVMEQRMNEVALGKKEKSQIVQATINEMTIILKQLQ 594
Query: 606 LKKVKLLEAMGIFFE 620
K+ +++ G + E
Sbjct: 595 EKQNLIIKTFGSYLE 609
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYL 696
QC +CQ + +GC ++PQC A++LP +V + C C P++
Sbjct: 718 QCNLCQNFMKIRYSKIKKTNFLGCSSYPQCNQAIFLPDTVKSIKLIDKKCTKCG-SPLFS 776
Query: 697 IQF 699
+QF
Sbjct: 777 LQF 779
>gi|414864982|tpg|DAA43539.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 329
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/326 (76%), Positives = 288/326 (88%), Gaps = 2/326 (0%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GG I VLNVAEKPSVAK+VA ILS+ + R GRS+YN+I+EFNY+I G+ CHML+TS
Sbjct: 5 GGGAIRVLNVAEKPSVAKAVAEILSRRSA-QSRAGRSQYNRIFEFNYAINGRACHMLVTS 63
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
VTGHLMEL+FD+R+R+WHSCDPA+L+HAPVRK VP+DK+ IK+TLEEEARRCQWLVLWLD
Sbjct: 64 VTGHLMELEFDDRFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWLD 123
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
CDREGENIA+EVI+VC N HL + RARFSALIDREIH++VQ+L PN+ FADAVDARQ
Sbjct: 124 CDREGENIAYEVIDVCTRANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDARQ 183
Query: 184 EIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLRIGASFTRFQTMLLK+ F ID D+R+LVLSYGPCQFPTLGF+VER+WEIQAHE
Sbjct: 184 EIDLRIGASFTRFQTMLLKDAFVIDVTGDERSLVLSYGPCQFPTLGFIVERFWEIQAHEP 243
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
EEFWTINC+H S+EGTA+F W+RGHLFDY+ A+ IYEMCV EP ATV VR QEKLKYPP
Sbjct: 244 EEFWTINCTHTSDEGTASFGWIRGHLFDYSCAISIYEMCVSEPMATVQNVRNQEKLKYPP 303
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKV 328
YPLST+EL+KRASRYFRMSSEHTMKV
Sbjct: 304 YPLSTVELQKRASRYFRMSSEHTMKV 329
>gi|339245545|ref|XP_003378698.1| DNA topoisomerase 3-alpha [Trichinella spiralis]
gi|316972379|gb|EFV56057.1| DNA topoisomerase 3-alpha [Trichinella spiralis]
Length = 870
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 303/773 (39%), Positives = 435/773 (56%), Gaps = 46/773 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEK ++++A ILS+ Q R REG S+YNKIYEFN ++ G+ C M+ TSV+GHL+
Sbjct: 4 VLNVAEKNDASRTIAQILSRGQMNR-REGFSKYNKIYEFNCTVFGELCRMVFTSVSGHLL 62
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDFD YR W S +L+ APVRK D + + +TL+ E R LV+W DCDREGE
Sbjct: 63 NLDFDSIYRNWQSVPVDELFTAPVRKCCSPDMQPVLRTLQAEVRMVDLLVIWTDCDREGE 122
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FEVI VC V LV++RA FS L + I +A+ +L +PN +DAVD RQE+DLR
Sbjct: 123 NIGFEVIGVCLEVKPSLVVKRAVFSELTSQAITRALASLTEPNALLSDAVDCRQEMDLRT 182
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L++ + D ++SYG CQFPTLG VV+RY + QA E FW +
Sbjct: 183 GAAFTRFQTLRLRDTFKRQLGDK---LISYGSCQFPTLGLVVDRYKQNQAFICETFWKLV 239
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H++ E F W RG LFD + + ++C++ P A V VR +++ + P L T+
Sbjct: 240 AKHETVE----FHWRRGRLFDRHACATLLQLCLESPVAVVRAVRSRKRTRKRPVALDTVG 295
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK A + M+++ M VAE LY G+ISYPRTET+ F +L +V++ + WG
Sbjct: 296 LEKMACKRLGMTAKEAMAVAEKLYTQGYISYPRTETNFFPKEIDLVSLVKQHVNDSQWGT 355
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A R+L P G D AHPPIHP + E Q H +LYE VVRHFLAC+
Sbjct: 356 FANRVLSQGV----QPRQGNKTDNAHPPIHPIRHVDLEQFQHQQHRRLYEFVVRHFLACI 411
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPT-YVHGQQFIPT 487
S A G +T VEI +A E FS SG ++ +NYL+VY +E+W + Y G +F
Sbjct: 412 SADAQGLQTTVEIEVADEQFSASGLIVTERNYLEVYHPYENWSEKQLDVAYAVGDRF-DV 470
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+ + +G T+PP LL+EADL+ M+K GIGTDAT +HI+ + R Y A+ R P
Sbjct: 471 QVEMVTGETKPPNLLTEADLIGLMEKFGIGTDATHAEHIETIQKRLYVGLTADKRLLPGF 530
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G LV GYD +G +L KP+LR+ E++++ ++ G++SK DVL + F+
Sbjct: 531 LGLGLVDGYDAIGCQLAKPDLRADFETELRRIADGSRSKQDVLGEYKAKYWHVFMQVTAM 590
Query: 608 KVKLLEAMGIFFERWSG-----------------GEDQQAAGEVVRQCGICQESNMVLKK 650
+L +A+ +F+ +G ++Q+ V +C C S M LK+
Sbjct: 591 AERLDQALSAYFDSGTGPSTVAVSGPSDNNYSARRQEQRQLDNVCTRCLSCGNS-MRLKQ 649
Query: 651 SRDGNLMVGCLAFPQCRNAVWLPG--SVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPP 708
+R+G VGC +P C+ A+WL + A+V + C+ CT LI+ K + P
Sbjct: 650 TRNGIYFVGCENYPSCKEAIWLDQRERIQFASVLADRCDWCTLRQTRLIELKLAPN--PL 707
Query: 709 GFNVNHLGCIGGCDETLRQL---------IEICGTGSRIPARGRGPTASSNNG 752
+ + C RQL +++ G +PA G P+ N
Sbjct: 708 TTSRICVTCPASNKLQTRQLPPNPPPPAFVQLDGARVSLPAPGPEPSVQENQA 760
>gi|428672326|gb|EKX73240.1| DNA topoisomerase III, putative [Babesia equi]
Length = 622
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/597 (44%), Positives = 378/597 (63%), Gaps = 12/597 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+ NVAEKPSVA+++ ILS + + SR N ++ F Y I G+ M TSV GHL
Sbjct: 4 IFNVAEKPSVARNITEILSNGKSTK-EFTNSRMNPVFSFTYHIDGEVSKMYFTSVKGHLS 62
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L+FD Y W+ +L+ AP + + +D KDI+K ++ A+ C ++LWLDCDREGE
Sbjct: 63 SLEFDPSYSNWNRTPIHELFTAPTYQIIIKDCKDIEKNIQYYAKLCDKMILWLDCDREGE 122
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
IAFEVIEV R V ++RA FSA+ +I QA NL +P+ A AV+ RQEIDLRI
Sbjct: 123 AIAFEVIEVFRGVQKSSNIKRAVFSAVTRSDIEQACCNLREPDINLAKAVETRQEIDLRI 182
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
G++ TRF T+ K+F + ++ VLSYGPCQ PTLGFVV+R+ I+ EE+W+IN
Sbjct: 183 GSAMTRFMTLKYKHF-----LNTKSNVLSYGPCQLPTLGFVVDRFKRIENFVREEYWSIN 237
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
EE +F W R LFD + + +YE+C++ P A VT++ +++ KYPP PL T+E
Sbjct: 238 VEVVLEETPVSFLWDRVRLFDGQAVLTLYEVCLENPLAFVTRINKRQTKKYPPLPLDTVE 297
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
+ K +Y ++SS M++AE LY GFISYPRTET+ F +L ++ HP +G
Sbjct: 298 MNKTVCKYLKISSSQCMQLAESLYSKGFISYPRTETNIFPQSIDLMSLINSLSNHPTFGE 357
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
YA+RL+D G + P G +D+AHPPIHP K + S H++LYE + R FLAC
Sbjct: 358 YAKRLVD---GDFCVPVMGKKNDEAHPPIHPVKSMTSSEAESPLHWQLYEYITRRFLACC 414
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
S+ AVG E+++ ++++GE F T G VI N+LD+Y +E W G ++P + GQ+ PT +
Sbjct: 415 SKAAVGDESMIFLDVSGEGFHTKGMVIREYNWLDIYTYEKWEGRIVPNFSQGQEITPTKI 474
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
TL +G T PP LLSEA+L+ M+K GIGTDATMH+HI+K+ DR YA+K+ RF PTN+G
Sbjct: 475 TLKNGKTNPPALLSEANLIDLMNKNGIGTDATMHEHIQKIQDRHYAVKNEKLRFIPTNLG 534
Query: 550 EALVMGYDDM---GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
+AL + + +L KP LR+ ME DM +++ G K+K DV+ M+ +L+
Sbjct: 535 KALYNAFKEYTASSIDLTKPALRAHMERDMSDIACGLKNKEDVVRVYADLMRDIYLE 591
>gi|198413663|ref|XP_002126376.1| PREDICTED: similar to topoisomerase (DNA) III alpha, partial [Ciona
intestinalis]
Length = 571
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 270/571 (47%), Positives = 371/571 (64%), Gaps = 16/571 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL+VAEK AK ++ ILS +Q ++R G S+YNKIYEF+Y + GQ C M +TS++GHL+
Sbjct: 10 VLSVAEKNDAAKRISDILSGHQ-YQVRNGFSKYNKIYEFSYHMLGQNCAMSVTSLSGHLL 68
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+F Y+KWHSC P L+ V K V E+ DIK+TLE E R Q LV+W DCDREGE
Sbjct: 69 NYNFAGIYKKWHSCHPLSLFDVEVEKIVTENMVDIKRTLEREVRNSQALVIWTDCDREGE 128
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I +CR + ++ + RARFS + DR I A +NL P+Q +DAVD RQE+DLRI
Sbjct: 129 NIGFEIINICRNIKPNIPVYRARFSEITDRSIKSACRNLQQPDQNTSDAVDVRQELDLRI 188
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ ++D ++SYG CQFPTLGFVVERY + + E+FW I
Sbjct: 189 GAAFTRFQTLRLQKVFPHVLSDK---LISYGSCQFPTLGFVVERYKAREQFQPEDFWKIE 245
Query: 250 CSHKSEEG------TATFSWMRGHLFDYTSAVIIYEMCVQEP-TATVTKVRQQEKLKYPP 302
+H + + T+TFSW R LF+ + ++Y C++ P ATVT V + + K+ P
Sbjct: 246 VTHTTTQHNDDGPVTSTFSWKRNRLFNELACRVLYANCMEPPVVATVTNVSSRPRSKWRP 305
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
+ T+ELEK ASR R++++ TMK+AE LY G+ISYPRTET+ F +L +V EQ
Sbjct: 306 VAMETVELEKLASRKLRINAKETMKIAETLYTQGYISYPRTETNIFPKDFDLERLVGEQT 365
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP WG +A+ LL G P +G D+AHPPIHPTK +S S ++ ++YEL+
Sbjct: 366 NHPAWGNFARDLLALEGG--PQPRNGHKSDQAHPPIHPTKAASN---LSGNNARIYELIA 420
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLAC + A G ET V+I + GE F+ G +I+ +NYL+VY ++ W G +I Y G
Sbjct: 421 RHFLACCHRDAKGHETTVDIILGGEEFNAQGLMIIERNYLEVYPYDRWNGKIIAVYNIGD 480
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+F PT L + G T PPLL+EADL++ MDK GIGTDAT +HI+ + R Y ++ R
Sbjct: 481 EFEPTGLNMPGGRTTAPPLLTEADLIALMDKHGIGTDATHAEHIETIKQRMYVGLTSDQR 540
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMME 573
F P +G LV GY+ MGYE+ +P LR+ +E
Sbjct: 541 FLPGELGMGLVEGYNLMGYEMSRPELRAELE 571
>gi|391328844|ref|XP_003738893.1| PREDICTED: DNA topoisomerase 3-alpha [Metaseiulus occidentalis]
Length = 689
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 288/691 (41%), Positives = 414/691 (59%), Gaps = 22/691 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS-IRGQP-CHMLMTSVT 65
+ VL+VAEK AK++A ILS N R +G RYNKIYEF R + MTS +
Sbjct: 1 MKVLHVAEKNDAAKNIAAILS-NGNHRTCDGLCRYNKIYEFTMPHFRNEANVSARMTSAS 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAP-VRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GH++ F ++Y+ W+S DP L+ AP ++K E + I++TLE E +RC+ L++W D
Sbjct: 60 GHILNFAFPDQYKDWNSIDPLVLFDAPLIQKCETETAEQIRRTLEREIKRCKHLIIWTDN 119
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE I FE+I++C+ V ++ + RA+FS + I +A+ +L +PNQ AV R +
Sbjct: 120 DREGEAIGFEIIDICKRVEPNVRVWRAKFSEITRSSIERALNSLQEPNQLLNYAVLVRSQ 179
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIGA+FTR QTM + + R+ VLSYG CQFPTLGFVVERY EI +E
Sbjct: 180 LDLRIGAAFTRLQTMRVGR----RFSATRSNVLSYGSCQFPTLGFVVERYKEIDEFRAER 235
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
F+ I H +E F W RG LFD++ +I+YE ++ P ++ + + K K+ P P
Sbjct: 236 FYKIEVKHVKDELYGEFIWKRGRLFDHSITLILYERLLERPHMKISTIEAKSKAKFRPQP 295
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
+ T+ LEK ASR RM+++ + AE LY G ISYPRTET+ F L +V+ Q
Sbjct: 296 MDTVSLEKLASRKLRMTAKEALAHAEKLYTEGLISYPRTETNKFPPEIQLLPLVEAQCQS 355
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P WG +A R+++ G +P +G D+AHPPIHPTK++ + + K+YELVVRH
Sbjct: 356 PQWGDFATRIVNEWGG--PHPRNGNKSDQAHPPIHPTKYA--QLNLQDNKGKVYELVVRH 411
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLACVSQ A G+ET V+ I E FS +G I+ +NYLDVY +E W VIP+Y G+ F
Sbjct: 412 FLACVSQDARGSETNVKAAIDEEHFSLNGLQIIERNYLDVYPYEKWSAKVIPSYREGETF 471
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
PT + + G T P LL+EADL++ M+K GIGTDAT +HI K+ R Y F
Sbjct: 472 TPTEILMSEGRTSAPSLLTEADLIALMEKHGIGTDATHAEHIDKVKQREYIGMADQIHFV 531
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
P IG LV GYDDMG+E+ KP LR+ +E+D+ ++ G K+ +VL N +Q + FL+
Sbjct: 532 PGQIGMGLVEGYDDMGFEMSKPRLRASLENDLMDICEGRKNHQEVLENQIQIYRRTFLNT 591
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQ---CGICQESNMVLKKSRDGN-LMVGC 660
+ KL +AMG + ++ + VVR+ C +C++ M L+K+R G+ + C
Sbjct: 592 LQQLNKLSDAMGKYLQQ---PVQEMLPDSVVREVLPCPLCRQGKMGLRKNRAGDKWFISC 648
Query: 661 LAFPQCRNAVWLP-GSVSEAAVTTNTCNSCT 690
++ C+ +WLP ++ V C SCT
Sbjct: 649 MS--GCQAVMWLPSNALDNCEVAATRCPSCT 677
>gi|403364238|gb|EJY81876.1| DNA topoisomerase [Oxytricha trifallax]
Length = 955
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/744 (39%), Positives = 422/744 (56%), Gaps = 70/744 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L VAEKP+VAKSV+ LS+N+ + S++N ++EF+Y I QP + +TSV GH+M
Sbjct: 6 ALCVAEKPTVAKSVSEFLSRNRFQKF-NSLSKFNPVFEFDYMIGNQPYLLRVTSVLGHVM 64
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
F + + W + + LY + K+V E+ + K ++ R L+LWLDCDREGE
Sbjct: 65 SYKFPDSCKNWQNTNYDQLYEIDLEKYVIENNVQVVKNVQAACRDVDELILWLDCDREGE 124
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
IAF+VI++C VN L + RA FSAL +I +AVQNLV PNQ +DAV RQEIDLRI
Sbjct: 125 AIAFDVIDICVKVNRRLKVLRAHFSALTREDIERAVQNLVPPNQNLSDAVRVRQEIDLRI 184
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GASFTR QT+ ++ + + + LVLSYGPCQFPTLGF+VER+ I+ ++E+FW +N
Sbjct: 185 GASFTRLQTLNFRDIMLGN-QQAQQLVLSYGPCQFPTLGFIVERFKHIRDFKAEKFWQLN 243
Query: 250 CS--HKSEEGT---ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+S +G F W R ++D + + +YE C+ A ++++ + + + P P
Sbjct: 244 LKLLKRSNDGKLDEVNFGWERDRVYDKMTCLALYERCLDSGRAKISEINKSRRTRGRPNP 303
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+TIE +K SR +++S M++ E LYQ G +SYPRTET++F+ NL IV E
Sbjct: 304 LNTIEAQKLISRKLKIASAQAMEIMEKLYQRGILSYPRTETNTFNPTINLRNIVNELCKS 363
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
+G +AQR+ D +W P +G DDKAHPPIHP KF+S + D +++YELV RH
Sbjct: 364 EVFGDFAQRISD--GSMWGGPKNGKQDDKAHPPIHPVKFASKQD-LGFDEWRVYELVARH 420
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLA +S+ A+GAET +E++ GE F T G +I +N+L+V+ +E W +P G+ F
Sbjct: 421 FLATISKDAIGAETCIEVSCGGEQFQTKGLIIEEQNWLEVFPYEKWSDSYLPQLNKGESF 480
Query: 485 IPT--TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
L + G TRPPPLL+EADL++ MD+ GIGTDAT+H+HIK + +R YA K T
Sbjct: 481 EVNNQNLKIQDGETRPPPLLTEADLITKMDQNGIGTDATIHEHIKHIQERQYAYKQGQT- 539
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL-------- 594
F P+ +G LV Y+ +G EL+KP LR+ ME DMK ++ G KSK VL +C+
Sbjct: 540 FLPSPLGTNLVEAYEHLGIELYKPYLRAQMEKDMKMIAEGIKSKDQVLRDCVNEMRRIFN 599
Query: 595 ------QQMKACFLDARLKKVKLLEAM--------------GIFFERWSGGEDQQAAGEV 634
QQMKA +D K + I + +GG Q+ A
Sbjct: 600 RVKDSTQQMKAFLIDRMQKSLNQNNNNNNNGGGGGGGQQIRSIADQPAAGGGGQRQANYR 659
Query: 635 VR---QCGICQESN--------------------------MVLKKSRDGNLMVGCLAFPQ 665
R Q G Q +N + +K SR G+L + C +P+
Sbjct: 660 NRDEEQKGQSQSNNQQGPANPQLNLQNTEFATCPQCKRSKLKVKTSRTGSLFIACTGYPE 719
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSC 689
C+ + LP + +T +C C
Sbjct: 720 CKMTMQLPKGLENITMTDESCVEC 743
>gi|296201147|ref|XP_002747908.1| PREDICTED: DNA topoisomerase 3-alpha [Callithrix jacchus]
Length = 931
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 296/748 (39%), Positives = 427/748 (57%), Gaps = 79/748 (10%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E +CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETHQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPSLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + +++ ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLSEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G FSW R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFSWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ + +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGNEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+I+ E F G +ILA+NYLDVY ++ W ++P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDISQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGFRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIG H+ + +D ++ +
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIG-------HLGQEVDSAQQGARSHEGKGRAQL 557
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
EAL + + + ++ M +++ NK D LK
Sbjct: 558 DEALAQYFGNGTEVAQQEDIYPAMPEPIRKCPQCNK------------------DMVLKT 599
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
K G + +G + ++A + VL+ SRDG++ C P
Sbjct: 600 KK----NGGLYLSCTGFPECRSA---------IWFPDSVLEASRDGSVCPVCQPHP---- 642
Query: 669 AVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQL 728
VY ++ KF++ +PP + + CIGGCDETLR++
Sbjct: 643 -------------------------VYRLKLKFKRGSLPPTMPLEFVCCIGGCDETLREI 677
Query: 729 IEICGTGSRIPARGRGPTASSNNGQQSN 756
+++ S+ P R P+ Q N
Sbjct: 678 LDL--RFSQGPPRASQPSGRLQASQYLN 703
>gi|156087759|ref|XP_001611286.1| DNA topoisomerase family protein [Babesia bovis]
gi|154798540|gb|EDO07718.1| DNA topoisomerase family protein [Babesia bovis]
Length = 633
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 278/633 (43%), Positives = 381/633 (60%), Gaps = 31/633 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+VLNVAEKPSVA+S++ ILS + +R +R N +Y F + G+ C M TSV GHL
Sbjct: 3 SVLNVAEKPSVARSISDILSGGR-MRSEMSNARTNPVYSFTAPLEGRHCKMYFTSVRGHL 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
ME+DFD RYR W L+ AP++ V + KDI+K L AR C LVLWLDCDREG
Sbjct: 62 MEIDFDARYRNWQRTPIESLFCAPIQAAVSSNCKDIEKNLLHYARMCSKLVLWLDCDREG 121
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSAL-----------IDREIHQAVQNLVDPNQWFAD 177
E IA+EV+ VC+ VN + +RRA FSA+ + EI A L +PN A
Sbjct: 122 EAIAYEVMAVCQRVNSAIAIRRAIFSAVTRWSFICDLDVVGHEIETACATLREPNPNLAQ 181
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AV+ARQEIDLRIG+S TRF T + D + VLSYGPCQ PTLGFVV+R+++I
Sbjct: 182 AVEARQEIDLRIGSSMTRFMTTRYRE-----RIDTESKVLSYGPCQLPTLGFVVDRFFKI 236
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
++ + E FW+I +S F W R LFD + + +YE C++ P A VT V +
Sbjct: 237 ESFQPESFWSIQVFIESGGKDYLFRWDRVKLFDRLAVLTLYEACLENPMAKVTHVSNRST 296
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
+YPP PL T+E+ K A+ + ++SS +M++AE LY G++SYPRTET+ F S NL +
Sbjct: 297 KRYPPLPLDTVEMHKDAAMHLKISSHESMRLAESLYNKGYVSYPRTETNVFPSSMNLRDL 356
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
V HP +G YA RLL P G +D+AHPPIHP K E S + L
Sbjct: 357 VGMFSSHPLFGEYANRLLQGEI----IPRKGNKNDEAHPPIHPVKPLRREEAESPQSWDL 412
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
Y + R FLAC S AVG E+IV ++I+GE F G V+ +N+LD+Y + SW G IP
Sbjct: 413 YVYITRRFLACCSPAAVGDESIVFLDISGEGFHAKGLVVRERNWLDIYPYASWNGTPIPA 472
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
GQ+ +P+ + L G TRPP LL+E DL+ M+K GIGTDATMH+HI+K+ DR Y K
Sbjct: 473 MEEGQELMPSRILLSDGCTRPPGLLTETDLIDLMNKHGIGTDATMHEHIQKVQDRRYVKK 532
Query: 538 DANTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
++N PTN+G+AL + ++ L KPNLR++MESD+ ++ G++ K DV+
Sbjct: 533 ESNFTLIPTNLGKALYNAFKSYAHQQIDLTKPNLRALMESDICAIAEGSQDKGDVVNKYS 592
Query: 595 QQMKACFLDARLKKVKLLEAMGIFFERWSGGED 627
QQM+ +L + ++G F E +G +D
Sbjct: 593 QQMRQIYL-------HIEGSIGAFDESMNGLQD 618
>gi|209875815|ref|XP_002139350.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209554956|gb|EEA05001.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 843
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 283/672 (42%), Positives = 399/672 (59%), Gaps = 49/672 (7%)
Query: 10 VLNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL +AEK SVAK +A L +NQ +S+ N + F Y G C+M++TSV GH+
Sbjct: 55 VLCIAEKHSVAKEIAWCLCPQNQNPNYLNSKSKTNPVLSFPYYFEGSKCNMIVTSVRGHI 114
Query: 69 MELDFDERYRKWHSCDPADLYH--APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+L FD R+ W + DP L + P+ K V ED DI + L+ ++ L+LWLDCDR
Sbjct: 115 KQLKFDPRFSSWETVDPIVLLNLSTPLIKVVSEDCNDIAQNLKHYSKLASTLILWLDCDR 174
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENIAFEVI VC N L + RARFSAL +I A+ NLV PN+ +DAV+ARQEID
Sbjct: 175 EGENIAFEVISVCLDANPKLKILRARFSALTKSDIEGAMNNLVAPNRAMSDAVEARQEID 234
Query: 187 LRIGASFTRFQTMLL-KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
LRIG+SFTRF T+ K F I T LSYGPCQFPTLGFVV+RY +I + +SE F
Sbjct: 235 LRIGSSFTRFLTLRYQKLFPIPEST------LSYGPCQFPTLGFVVDRYRKIVSFKSEPF 288
Query: 246 WTINC--SHKSEEGT-----ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
W I+ S SE+G+ F W+R +FD+ +A++IYE C+++P ATV V ++
Sbjct: 289 WQISVTLSFHSEDGSLKDKLIKFDWIRDRIFDHLAALVIYEFCLEDPIATVVSVHGKQVR 348
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
Y P P++T+E+ K AS + TM +AE+LYQ G+ISYPRTET+SF +L I+
Sbjct: 349 NYKPLPMNTVEMTKIASIKLNIPPITTMNIAENLYQKGYISYPRTETNSFPESMDLKVII 408
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
+EQI H WG YA L+ + + NP G D++HPPIHP K S + +KLY
Sbjct: 409 REQINHQTWGRYASLLISNDK--YCNPRCGNSSDESHPPIHPVKCLDQNEATSAEEWKLY 466
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPT 477
EL+ RHFLA S A+G E++V ++IAGE F G V+L +N+LD+Y+ +E W G V+P
Sbjct: 467 ELITRHFLAVCSDDAIGQESVVILDIAGEQFKAKGLVVLEENWLDIYKPYERWCGNVLPE 526
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ G + P ++ L T PP L++EA+L+ MDK GIGTDATMH+HI+K+ R Y IK
Sbjct: 527 FNQGDKLTPYSIFLSQSKTEPPHLITEAELIDLMDKNGIGTDATMHEHIEKIQTRQYVIK 586
Query: 538 DANTRFAPTNIGEALVMGYDDMGYE---------------------------LWKPNLRS 570
+ ++ PT++G AL +G++++ E L +PNLRS
Sbjct: 587 NPRSQLIPTSLGYALALGFEEISKEANKIEQRDGLLLASDSSRNSICKFDKNLIRPNLRS 646
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE-AMGIFFERWSGGEDQQ 629
ME MKE+S G +++ V+A L MK + + ++ L+ + ++F RW +
Sbjct: 647 AMEFSMKEISGGILNRSTVVAEILDSMKYIY-QTMVHSIRFLDNSFKLYFPRWDSDLVFK 705
Query: 630 AAGEVVRQCGIC 641
++ IC
Sbjct: 706 NGTIRIKSFSIC 717
>gi|399218372|emb|CCF75259.1| unnamed protein product [Babesia microti strain RI]
Length = 603
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/596 (45%), Positives = 368/596 (61%), Gaps = 13/596 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVLNVAEKPSVAK + +LS N + S+ N + F Y++ + C+M TSV GH
Sbjct: 4 LNVLNVAEKPSVAKGITNLLS-NGSFKRETSHSKTNPVTSFRYNLLDRSCNMYFTSVRGH 62
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L LDF + Y KW+ C P L+ AP+R V + KDI+K L+E ++ C WLVLWLDCDRE
Sbjct: 63 LTNLDFTKEYAKWNECSPDVLFTAPIRSFVSPNCKDIEKNLKEYSKICDWLVLWLDCDRE 122
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE IA+EVI+ C + + R A FSA+ +I A +NL PN+ A AV+ARQEIDL
Sbjct: 123 GEAIAYEVIDSCASSRVKEIYR-AIFSAVTKFDIKNACRNLSRPNKNLALAVNARQEIDL 181
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIG+ FTRF TM K+ + +D V+SYGPCQ PTLGFV +R++E + SE+FW
Sbjct: 182 RIGSVFTRFMTMRYKH----RINNDTK-VISYGPCQLPTLGFVADRFFERENFVSEKFWY 236
Query: 248 INCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I+ HK + G T TF W R LFD + II+E C ++P A V + ++ KYPP P +
Sbjct: 237 ISVEHKLQSGQTLTFKWDRSRLFDQNAVEIIHEECKRKPEALVCGLDKKLTRKYPPLPAT 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TI++ K ++Y +MSS M +AEDLY G+ISYPRTET+ F +L +V H
Sbjct: 297 TIQMNKDVTKYLKMSSHRAMSLAEDLYNQGYISYPRTETNVFPETIDLKSLVNMFTSHSL 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
G YA ++ + + G +D AHPPIHP K + S++HY LY + RHFL
Sbjct: 357 LGDYASKISNGTIAARK----GKCNDNAHPPIHPVKLLEATNAMSKEHYDLYLYISRHFL 412
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A +S PA+G E+ V I+IAGE+F+ G +I ++ VY ++ W +P + G +F P
Sbjct: 413 ASLSPPAIGYESSVSIDIAGEIFTAKGTMIHDLSWFQVYPYDKWSEKSLPLFKQGDKFFP 472
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T + L +G T PPPLL+E+DL+ M K GIGTDATMH+HIKK++DR YAIK N F PT
Sbjct: 473 TEIKLINGETSPPPLLTESDLIDLMCKNGIGTDATMHEHIKKIIDRNYAIKSDNMYFLPT 532
Query: 547 NIGEALVM-GYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+G++L GY G +L KP LR+ MESDM V+ G+ K V+ + M +
Sbjct: 533 KLGQSLAFAGYATTGLDLSKPMLRAKMESDMDLVAQGHLKKEQVVTTYSKLMSKIY 588
>gi|145511830|ref|XP_001441837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409098|emb|CAK74440.1| unnamed protein product [Paramecium tetraurelia]
Length = 947
Score = 520 bits (1340), Expect = e-144, Method: Compositional matrix adjust.
Identities = 269/614 (43%), Positives = 387/614 (63%), Gaps = 18/614 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
I VLNVAEKPSVA+S+A +L+++ + E +S YNK+++FN+ Q M +TSVTGH
Sbjct: 13 IKVLNVAEKPSVARSIANVLARDHT--VEETQSPYNKLFKFNFKFGDQEVEMWITSVTGH 70
Query: 68 LMELDFDERYRKWHSCDPAD-LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
L L + ++Y+KW DP L A + +P +K+ ++ L++ AR C L+LWLDCDR
Sbjct: 71 LKSLRYPKQYQKWDQWDPIIILKDAEIENIIPNEKRFLEGNLKQFARECSQLILWLDCDR 130
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENIAFEV+EVC+ N + + RA FSA+ +I +A+ NL P++ +++V ARQEID
Sbjct: 131 EGENIAFEVLEVCKDSNPQIQVHRAHFSAVTYIDIKKALDNLKQPDENLSNSVLARQEID 190
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGASFTRFQT+LL V+SYGPCQ PTLGFVV+R EI + E+FW
Sbjct: 191 LRIGASFTRFQTLLL------QQQFHLQSVISYGPCQIPTLGFVVQRQKEIDSFVKEKFW 244
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I C +++ G ++W RG++FD +I++E C E A +T V+ +E K+ PYPLS
Sbjct: 245 FIQCEDQTKCG---YNWSRGNIFDEMIVLILFERCFTE-QAKITDVQSKEVQKWKPYPLS 300
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIE EK AS+ ++S+ M++AE LY GFISYPRTET+ F NL I+++Q+ HP
Sbjct: 301 TIEFEKLASKKLKISAHKAMELAEKLYNRGFISYPRTETNKFPPTINLQNIIRDQVNHPV 360
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ L++ + P +G DDKAHPPIHP K +Q +++Y+L+ RHFL
Sbjct: 361 WGEFAQSLINCN---FDQPRAGNKDDKAHPPIHPVKMMRESDAQTQQEWEIYQLITRHFL 417
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC S+ A G+ET V + + E F G VIL KNYL++Y ++ W +P Y G I
Sbjct: 418 ACCSKNAKGSETTVNLQVQEESFYKQGLVILEKNYLEIYPYDEWSQSQVPNYKKG-DMIQ 476
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
TL + +G T PP ++E++L+ MDK GIGTDAT+H+HI + +R YAIK PT
Sbjct: 477 ITLKIQNGKTSPPKPMTESELIGLMDKNGIGTDATIHEHINTIQEREYAIKKGQI-IKPT 535
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G ALV Y+ +G+ L KP+LR++ME M EV+ G K K ++ + +M +
Sbjct: 536 KLGLALVESYEMLGFTLHKPHLRAVMEQRMNEVAQGTKQKKQIVEATIAEMSDILKQLQE 595
Query: 607 KKVKLLEAMGIFFE 620
K+ +++ G + E
Sbjct: 596 KRSQIISTFGQYLE 609
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 26/174 (14%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYL 696
+C CQ + + + GCL +PQC A++LP + T C C
Sbjct: 770 KCNQCQNQMKIRQSKLKNSYFFGCLGYPQCNQAIFLPDYIKSIQRTDKKCRKCNSNI--- 826
Query: 697 IQFKFRQHEIPPGFNVNHLGCI-GGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQS 755
F+ E + L C+ C E G + + R + N +S
Sbjct: 827 --FQTEYSENSTFQQKSQLLCLYPECSE---------GFKTEWKNQNRESQQTHLNNSKS 875
Query: 756 NH----RQRACIYCQQMGHSSSDC-------PSQFSGSRNARANGMNPQSGMTA 798
RQ C C Q GH C PS ++ + + + P G+T
Sbjct: 876 KQGFLMRQVQCKKCNQFGHYEDVCNINSKTIPSLADSNQKEKKDKLCPSCGITG 929
>gi|303271853|ref|XP_003055288.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463262|gb|EEH60540.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 639
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/639 (45%), Positives = 383/639 (59%), Gaps = 30/639 (4%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
PI VLNVAEKPSVAK V+ +LS + +REG++ +NKI+EF + ++GQ C M+ TSVTG
Sbjct: 3 PIRVLNVAEKPSVAKEVSRVLSNGRA-SMREGQTPWNKIWEFEHRVQGQQCRMVFTSVTG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYH-APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
HLM LDF RKW + +L APV K V K+ + L EAR WL+LWLDCD
Sbjct: 62 HLMNLDFTGGARKWGGINARELIDGAPVEKMVSSGKEKTAENLRREARNAAWLILWLDCD 121
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGENIAFEV++VCR V L + RARFSAL ++ +A+ LV PN+ + AVD RQE+
Sbjct: 122 REGENIAFEVMDVCRGVKPTLRILRARFSALSHNDVTRALNALVAPNENESKAVDMRQEL 181
Query: 186 DLRIGASFTRFQTMLLKN-FHIDSVTDD-RNLVLSYGPCQFPTLGFVVERYWEIQAHE-- 241
DLR+GASFTRF TMLL+N F + +D R V+SYGPCQFPTLGF+V+R W+ QA
Sbjct: 182 DLRLGASFTRFNTMLLQNRFRLPGANEDGRGAVVSYGPCQFPTLGFIVQRKWD-QARSPY 240
Query: 242 --SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+ A F+W R LFD A ++ ATVT +E K
Sbjct: 241 TGGGGGGGAGAVNPDAGAAAEFAWARERLFDEGLARTLFGFVQTARIATVTNEGGRETKK 300
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
+PP PL+TIE++KR +R R+S MKVAE+LY AGFISYPRTETD+F + GI+
Sbjct: 301 WPPVPLNTIEMQKRVNRACRISPAEVMKVAEELYNAGFISYPRTETDAFPKDFDFAGIIG 360
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE--SRWSQD---- 413
H +G +A R L + +R PG+GGHDD AHPPI+PTK ++ W +D
Sbjct: 361 PLTNHHVFGFHA-RALSAPSNRFRFPGNGGHDDNAHPPIYPTKLATERDYDAWRRDGKMN 419
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-------- 465
K+Y+ V RHFLA S PA+ +T VEI I GE F +G +I NYLDVY
Sbjct: 420 QIKIYDFVARHFLATCSLPAIAHKTTVEIEIGGEAFKATGVMIKEMNYLDVYGKGPVGGP 479
Query: 466 ----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDAT 521
++ W +PTY GQ+F PT L+L G T+PP LLSE DLL M+ IGTDAT
Sbjct: 480 RFDVSYDGWANNTLPTYAVGQRFEPTELSLAPGATQPPQLLSETDLLQKMENHQIGTDAT 539
Query: 522 MHDHIKKLL-DRFYAIKDANTRFAPTNIGEALVMGYDDMGYE-LWKPNLRSMMESDMKEV 579
HI+K++ +R YA+K + R PT +GEAL GY MG E +W P R++ME+D+ V
Sbjct: 540 QAQHIEKVVGERGYAVKVGDNRLRPTELGEALCAGYYRMGLEDMWLPTKRAVMEADVNRV 599
Query: 580 SVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIF 618
++G N M F D K+ L++A+ F
Sbjct: 600 ALGQLDVPTGKRNTTTPMLDAFRDLERKQRMLVDAVAEF 638
>gi|357613303|gb|EHJ68426.1| prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 734
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 288/774 (37%), Positives = 428/774 (55%), Gaps = 51/774 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEK AK++AG LS N R REG S++NKIYEF+ + GQ M+MTSV+GHL+
Sbjct: 4 LNVAEKNDAAKNIAGFLS-NFKHRRREGLSKFNKIYEFDAEVMGQRSKMVMTSVSGHLLN 62
Query: 71 LDF--DERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+F +KW + DP L++ PVRK P++ K+IK+TL+ E + C L++W DCDREG
Sbjct: 63 YEFVNKNESKKWDAYDPKKLFYEPVRKCCPDNYKNIKETLQREIKGCDGLIIWTDCDREG 122
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+IEVC+ + ++ + RA+FS + + + +A+ NL P++ + AVD RQE+DLR
Sbjct: 123 ENIGFEIIEVCKNIQRNINIYRAKFSEITAQSVRRALSNLGVPDEHTSKAVDIRQELDLR 182
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA FTRFQT+ +++ ++V+ N ++S+G CQFPTLGFVVER+ I+ E+FW +
Sbjct: 183 IGAVFTRFQTVKIQSSFQNNVS---NKIVSFGSCQFPTLGFVVERWRAIENFIPEKFWKL 239
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H + F W R +FD I Y MC++ TATV V + K K+ P PL T+
Sbjct: 240 QVNHTLGNESTDFLWDRVKIFDKDICNIFYNMCLENKTATVVNVETKPKTKWRPLPLDTV 299
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK+ASR +++++ TMK+AE LY AG ISYPRTET+ FS+ NL +++ P WG
Sbjct: 300 ELEKQASRLLKINAKTTMKIAEKLYTAGIISYPRTETNQFSNDINLVKLIELHKDDPSWG 359
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L NP G D+AHPPIHPTK+ + + ++YE +VR FLAC
Sbjct: 360 TFAQNVLSQGP----NPRRGNKSDQAHPPIHPTKYVTNLVNMER---RVYEFIVRTFLAC 412
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
S+ AVG ET V + +A E F SG ++ +NYLDVY ++ W I Y G F T
Sbjct: 413 CSKDAVGKETTVRLTVADEGFHASGLIVTERNYLDVYPYDKWTSKHIHDYQVGDTFTATK 472
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + T PP LL+EA+L++ M+K GIGTDAT DHI+ + R Y + + N +F PT +
Sbjct: 473 VEMIESETSPPELLTEANLITLMEKHGIGTDATHADHIETIKIRNYVVIEGN-KFKPTEL 531
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD + + KP+LR+ E+D+K + KS VL + +++ K + L++
Sbjct: 532 GRGLVEGYDMLSLPMSKPHLRANFEADLKLICDRKKSADAVLRDQIEEYKKLYDKMLLEQ 591
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
KL+ + ++ E + AG + + SR G+ G C
Sbjct: 592 NKLIGLWKRRLQNYTWSEPRPGAGSESSSNAAPRNTPSTSSASRTGS---GHSVLCHCNR 648
Query: 669 AVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ----FKFRQHEIPPGFNVNHLGCIGGCDET 724
A +T N Y Q FK+ ++ +P
Sbjct: 649 PA--------ATLTCQKSNENRGRKFYKCQECNFFKWVENSLPSN--------------- 685
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQ 778
P G + N ++ + R C C++ GH+ ++CP++
Sbjct: 686 -------AQNPYETPPSSGGTNGADTNRPTTSRQPRLCSVCRRPGHNITNCPAR 732
>gi|320166036|gb|EFW42935.1| topoisomerase III [Capsaspora owczarzaki ATCC 30864]
Length = 874
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/580 (45%), Positives = 368/580 (63%), Gaps = 29/580 (5%)
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
M+ TSV GHL+ DF Y KW++C P L+ AP+ + +PE +DI+K L+ EA+R QWL
Sbjct: 1 MVFTSVVGHLLASDFTADYSKWNTCAPEALFEAPIERFIPEKLRDIEKMLQREAQRAQWL 60
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA 178
VLW DCDREGENIA EV+ VC+ VN +LV+ RARFSA+ R+I A NL + DA
Sbjct: 61 VLWTDCDREGENIASEVVAVCKKVNRNLVVLRARFSAVTPRDITHACNNLTQVDGRQVDA 120
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
VDAR E+DLRIG++FTR QT LL+ I + + ++ V+SYGPCQFPTLGF+V+RY ++
Sbjct: 121 VDARIELDLRIGSAFTRMQTQLLQP-AIPELNELKS-VISYGPCQFPTLGFIVDRYRRVK 178
Query: 239 AHESEEFWTINCSH----------------------KSEEGTATFSWMRGHLFDYTSAVI 276
A EEFWTI + K+ T F+W+RG LFD+ + ++
Sbjct: 179 AFVPEEFWTIVVACPSPSSESSAAAVAVPQKPGKKGKAASDTVPFTWVRGQLFDHPACLV 238
Query: 277 IYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG 336
+YEM ++ P ATV V + K+ P PLST+EL+K AS R +S+HT+K AE LY G
Sbjct: 239 LYEMILERPEATVVSVESRPTSKWRPLPLSTVELQKLASVQLRFTSDHTLKTAESLYTQG 298
Query: 337 FISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHP 396
F+SYPRT+TD F +L + Q HP+WG + + + A G NP G ++D+AHP
Sbjct: 299 FLSYPRTDTDVFPETMDLTALANMQANHPEWGSFVHQYI-LARG--PNPRKGKNNDEAHP 355
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
PIHPTK + S + D KLYELV R FLA +S A G T VEI++AGE F +G I
Sbjct: 356 PIHPTK-PAPASFQNADEKKLYELVTRSFLATLSSDAQGHLTNVEIDVAGERFRANGLAI 414
Query: 457 LAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
L +NYL VY ++ W +P + G +F P + +D+G T PPPLL+E+ LL+ M + GI
Sbjct: 415 LERNYLLVYPYDVWSNHTLPPFREGDRFQPAEVRMDAGSTTPPPLLTESALLTLMHQHGI 474
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDM 576
GTDATMH+HIKK+L+R YA F PTN+G L+ GYD MG E+ KP++R+ ME++M
Sbjct: 475 GTDATMHEHIKKVLERKYAEMRGQM-FLPTNLGLGLIEGYDSMGLEMSKPHMRARMEAEM 533
Query: 577 KEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMG 616
++ G ++KA V+ + L F+DA ++ L++A+
Sbjct: 534 LKICSGQQTKAQVIRSTLDLYLPAFMDACRQRRMLVDALS 573
>gi|328766432|gb|EGF76486.1| hypothetical protein BATDEDRAFT_14853, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 612
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 263/612 (42%), Positives = 389/612 (63%), Gaps = 19/612 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L VAEKPS++KSVA IL + ++Y K YEF+ +G+ C ++MT++ GHLM
Sbjct: 1 ILCVAEKPSISKSVAEILGDGR-FETSSTANKYIKNYEFSQQCQGRECTVVMTALLGHLM 59
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
E DF ++ W L+ AP++K V +D K + L ++R+ + LV+W DCDREGE
Sbjct: 60 ESDFSPEWKSWRMATLQHLFGAPIQKKVKQDMKGLADNLRAKSRQSEMLVIWTDCDREGE 119
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI EV++VCR N +++++RARFS I QA LV+ + A AVDAR E+DLRI
Sbjct: 120 NIGAEVVQVCRETNPNIIVKRARFSV-----IKQAWNRLVELDWRAAAAVDARTELDLRI 174
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA FTRFQT+ L+ H +++ +LSYGPCQFPTLGFVV+R+ ++Q+ E+FW+I
Sbjct: 175 GAVFTRFQTLQLQG-HFKELSEQ---ILSYGPCQFPTLGFVVDRFRKVQSFIPEKFWSIT 230
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
A F W R HLF+ + +YE+C++ P T++KV + K K+ P PL+T+E
Sbjct: 231 LEVTRNGLRAVFGWSRNHLFNRHIVLALYELCMKNPVCTISKVEAKPKSKWAPLPLTTVE 290
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
L+K SR+ MSS+ M+VAE LY G +SYPRTETD F +L ++++Q +WG
Sbjct: 291 LQKVGSRFLHMSSDRVMQVAEALYNRGIVSYPRTETDCFDDKFDLMPLIEKQTQSQEWGS 350
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
YA LL+ G + P G ++D+AHPPIHP + + S D K+++ + R FLAC
Sbjct: 351 YAASLLN---GKFTKPRKGKNNDQAHPPIHPVRAAFD---LSGDEKKVFDYITRRFLACC 404
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
S A G ET+V++ ++ E F++SG +IL +NYL+V+ +E W IPT+ G++ P+ L
Sbjct: 405 SAAARGQETVVDLELSQEKFTSSGLMILERNYLEVFPYEKWSDSDIPTFSVGERVEPSLL 464
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T P +L+EADL++ MDK+GIGTDAT+H+HIKK+LDR YA K+ N F PT +G
Sbjct: 465 EMREGSTTRPTMLTEADLITLMDKSGIGTDATIHEHIKKILDREYARKE-NIYFFPTTLG 523
Query: 550 EALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
ALV YD+M + L +P LRS+ E++MK++ G + + DV++ ++ K F+ A +
Sbjct: 524 MALVTAYDEMDIDLSLSRPFLRSLTEANMKKICDGARQREDVVSESIELYKNVFIAAFGQ 583
Query: 608 KVKLLEAMGIFF 619
KL E+ FF
Sbjct: 584 ASKLHESCAKFF 595
>gi|336371414|gb|EGN99753.1| hypothetical protein SERLA73DRAFT_52441 [Serpula lacrymans var.
lacrymans S7.3]
Length = 875
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/621 (43%), Positives = 386/621 (62%), Gaps = 18/621 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A+S++ ILS + R+ ++Y K ++F+Y H +TSV+GH
Sbjct: 1 MRVLCVAEKPSIARSISQILSGGR-FETRQTTNKYIKNFDFDYPQTN--AHFTVTSVSGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ DF + R W SCDP L+ APV+ VP D K I++ L EAR L++W DCDRE
Sbjct: 58 LLTYDFPDTCRSWKSCDPFYLFDAPVQSKVPTDSKSIERNLMSEARSANTLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI EV +VC+ ++V++RARFSA+I ++IH+A Q+ ++ + ADAV+AR +DL
Sbjct: 118 GENIGHEVAKVCQKARPNIVVKRARFSAIIPQQIHRAAQHPIELDLAQADAVEARIILDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR QT+ L++ H + D R V SYGPCQFPTLGFVV RY ++++ E FW
Sbjct: 178 RIGAAFTRMQTLALQS-HFAQLNDKREPV-SYGPCQFPTLGFVVSRYNQVKSFLPEPFWY 235
Query: 248 INCSHKSEEGT--ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
I S G F+W RGH+FD+ AV +YE ++ TA VTKV Q+ K+ P PL
Sbjct: 236 IYLSLSRPLGAEETQFNWRRGHIFDWHVAVALYEGVLESRTARVTKVTQKNTKKWKPLPL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K SR +++ + + +AE LYQ GF+SYPRTETD F + ++ +Q P
Sbjct: 296 TTVELQKAGSRLLKLAPKKVLDIAEKLYQQGFLSYPRTETDQFDPQFDFMHLIAKQTADP 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +A L + G + P G ++DKAHPPIHPT + + D K+YE + R F
Sbjct: 356 AWGGFATSLQE---GGFNVPRKGKNNDKAHPPIHPTAHVAN---LAGDEKKVYEYIARRF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC S+ A G+ET V++ GE F +G VIL +NYL+VY ++ W IP + G++F
Sbjct: 410 LACCSKDAEGSETTVDVEYGGEQFYVTGLVILQRNYLEVYPYDKWSSKEIPEFREGEEFG 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI---KDANTR 542
PT + G T P LL+EADL++ MDK GIGTDAT+ HI+ ++DR Y I + +
Sbjct: 470 PTVCEVREGQTSAPSLLTEADLVTLMDKNGIGTDATIAQHIQTIVDREYVIERMEGSTKH 529
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
P+ +G L+ GY+ +G++ L KP LR E M +V GNKSK D+LA + Q K
Sbjct: 530 LIPSTLGIGLIEGYNQIGFDRSLSKPQLRRQTERSMAQVCEGNKSKGDMLAESIDQYKEM 589
Query: 601 FLDARLKKVKLLEAMGIFFER 621
F+ A+ + K++ ++ + ER
Sbjct: 590 FITAKREFEKVVASVRRYIER 610
>gi|341880276|gb|EGT36211.1| CBN-TOP-3 protein [Caenorhabditis brenneri]
Length = 763
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 271/595 (45%), Positives = 366/595 (61%), Gaps = 7/595 (1%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK VAK VA ILS R +EGRS++NKIY N + GQP + +TSV+GHLM
Sbjct: 5 LFVAEKNDVAKGVAAILSNGTSNR-KEGRSKFNKIYTLNTELFGQPTAVSVTSVSGHLMN 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F E W + L+ APVR V + K I++TL EEARR LV+W DCDREGE
Sbjct: 64 WQFHENMANWQTTSMVQLFDAPVRHVVTPEMKLIEQTLREEARRHDVLVVWTDCDREGEA 123
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E+++VCR N + + RARFS + I +A +NL+ ++ AVD R E+DLRIG
Sbjct: 124 IGAEIVKVCRETNRQMDIYRARFSEITKVAITRAARNLIRLDEKIVAAVDCRSELDLRIG 183
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRN-LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
++FTR QT+ L+N D + + N V+SYG CQFPTLGFV +RY I+ SE FW +
Sbjct: 184 SAFTRLQTLHLRNRFRDLLGQNENSKVISYGSCQFPTLGFVTDRYKMIENFISEPFWKLV 243
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H E F W R LFD + +++E C + A V KV ++ K K+ P L T+E
Sbjct: 244 VEHTRETHKVEFLWDRVRLFDRDTVEVLHEDCNEAKEAVVEKVTKKPKSKWRPQALDTVE 303
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK RMS++ TM+VAE LY G+ISYPRTET+ F +G +L +VQ+Q WG
Sbjct: 304 LEKLGISKLRMSAKQTMQVAEKLYSKGYISYPRTETNKFPAGLDLRPLVQQQTNSGIWGD 363
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A +L + NP +G D+AHPPIHP F ++ D +K+YELVVRHFLACV
Sbjct: 364 FANEVLQNGI----NPRNGRKSDEAHPPIHPLSFVD-RTQLQGDDWKVYELVVRHFLACV 418
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET+V + I GE F +SG I YL VY +E WG ++PTYV G++F L
Sbjct: 419 SQDAQGEETMVNLRIGGEKFHSSGLRIRDMGYLKVYIYERWGNRLLPTYVEGERFSDYNL 478
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T+PP LL+EADL++ MDK GIGTDAT +HI+K+ R Y + + P+ +G
Sbjct: 479 RIGDGKTQPPELLTEADLIALMDKFGIGTDATHAEHIEKIKTREYIGVKPDGKLIPSFLG 538
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
ALV GYDDMG+ + KP+LR+ +E +KE+ G + K VL + + KA F+++
Sbjct: 539 LALVDGYDDMGFAMSKPDLRANLEIGLKEICEGRRQKQQVLDEQIGKYKAIFVES 593
>gi|402225468|gb|EJU05529.1| prokaryotic type I DNA topoisomerase [Dacryopinax sp. DJM-731 SS1]
Length = 866
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 260/614 (42%), Positives = 384/614 (62%), Gaps = 20/614 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS-IRGQPCHMLMTSVTG 66
+ +L VAEKPS+A++++ ILS Q R+ +R+ K Y+F Y +R + + +TSV G
Sbjct: 1 MEILCVAEKPSIARAISQILSGGQST-TRDSPNRFTKNYDFYYDELRAE---ITVTSVAG 56
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HLME DF + YR+W SCDPADL+ AP+ V +D I + LE EAR L++W DCDR
Sbjct: 57 HLMESDFSDDYRRWESCDPADLFDAPIITAVRKDGGPIARNLEIEARGKNMLMIWTDCDR 116
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV VCR N + ++RARF+A+I ++IH A ++ V+ ++ +DAV+AR ++D
Sbjct: 117 EGEHIGSEVASVCRKTNARIEVKRARFNAIIPQQIHHAARHPVELDRRQSDAVEARIQLD 176
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+GA+FTR QT +L+N V D + ++SYGPCQFPTLGFVV RY ++QA E FW
Sbjct: 177 LRLGAAFTRMQTKMLQN----QVPDLQRKMISYGPCQFPTLGFVVSRYQQVQAFVPETFW 232
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I S + F+W RGHLFD+ + + +YE+CV+ P AT+ +V ++ K+ P PL+
Sbjct: 233 YIYLSIMVDGEETDFTWRRGHLFDFPATLALYELCVESPEATIAQVTKKPTKKWRPLPLT 292
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K ASR R++ + + +A+DLY GF+SYPRTETD F + ++Q+Q P
Sbjct: 293 TVELQKSASRLLRLTPKRILDIADDLYSKGFLSYPRTETDQFDPDFDFMTLIQKQTTDPA 352
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ L A G + P G +DKAHPPIHPT + D ++YE V R FL
Sbjct: 353 WGQFAQSL---ANGGFNAPRKGKKNDKAHPPIHPTAHVTN---LVGDDKRVYEYVTRRFL 406
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A S+ A G +T V + +AGE F+ +G I +NYL+V+ ++ W +P + GQ FIP
Sbjct: 407 ASCSKDAEGQQTTVTVIVAGEEFNATGLTITQRNYLEVFTYDKWSDKQLPDFEQGQHFIP 466
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI---KDANTRF 543
+ G T P LL+EADL+ MD+ GIGTDAT+ HI+ ++DR Y + +D+
Sbjct: 467 VVCEMREGQTSRPSLLTEADLVGLMDENGIGTDATIAQHIQTIIDREYVMTRQEDSMKYL 526
Query: 544 APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
P+ +G LV GY+ +G++ L KP LR E M ++ G +K D+L ++Q + F
Sbjct: 527 VPSTLGIGLVEGYNKIGFDRSLSKPQLRRETEQRMVDICEGRSTKNDMLFQFIEQYREVF 586
Query: 602 LDARLKKVKLLEAM 615
L AR +++E++
Sbjct: 587 LRARAAFRQVVESV 600
>gi|393217722|gb|EJD03211.1| prokaryotic type I DNA topoisomerase [Fomitiporia mediterranea
MF3/22]
Length = 1081
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 279/632 (44%), Positives = 380/632 (60%), Gaps = 30/632 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A+S+ GILS Q R R++Y K Y+F+Y +T+V+GH
Sbjct: 1 MRVLCVAEKPSIARSITGILSGGQ-YNTRATRNKYIKNYDFDYPQ--TRSTFTVTAVSGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LME DFDE YR W SCDP L+ APV + D K I++ L++EARR L++W DCDRE
Sbjct: 58 LMEHDFDEAYRSWGSCDPFTLFEAPVIARIAGDNKTIEENLKKEARRADELMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI EV+ VCR VN + + RARFSA+I ++IH+A QN +Q ADAV+AR +DL
Sbjct: 118 GENIGAEVVRVCRKVNVGIRVTRARFSAIIPQQIHRAAQNPGLLDQAQADAVEARTILDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+GA+FTR QT+ L+ + + D V SYGPCQFPTLGFVV RY ++QA E FW
Sbjct: 178 RLGAAFTRMQTLNLQR-RFEQIKDTGTPV-SYGPCQFPTLGFVVSRYEQVQAFVPEAFWY 235
Query: 248 INCS--------------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVR 293
I S EE T FSW R LFD +A IYE V+ P A VTK
Sbjct: 236 IYLSLSRSGASVEKGGKKKNGEEETTEFSWRRVRLFDRLAAEAIYEYVVENPVARVTKKT 295
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+ K+ P PL+TIEL+K SR R++ + + +AE LYQ G +SYPRTETD + +
Sbjct: 296 CKPTKKWKPLPLTTIELQKAGSRLLRLAPKTVLDIAEKLYQRGLLSYPRTETDQYDPQFD 355
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQD 413
++ +Q P WG +A +L + G + +P G ++DKAHPPIHPT ++ + D
Sbjct: 356 FMSLIGKQTVDPTWGGFATQLQN---GEFTSPRKGKNNDKAHPPIHPTNYAGN---LAGD 409
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL 473
++YE V R FLA + A G ET VE+ GE FS SG ++LA+NYLDVY ++ W G
Sbjct: 410 EKRVYEFVTRRFLASCHKDAEGQETTVEVCCGGEYFSASGLIVLARNYLDVYVYDKWNGR 469
Query: 474 VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRF 533
+P + G+QF+P+ L G T P LL+EADL+ MDK GIGTDAT+ HI+ + DR
Sbjct: 470 YLPNFDEGEQFMPSICELREGETSSPTLLTEADLVGLMDKNGIGTDATIAQHIQMVTDRG 529
Query: 534 YAIKDAN---TRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKAD 588
Y I+ P+ +G LV GY+++G+E L KP LR E M +V KSK D
Sbjct: 530 YVIERMEGVVKYLVPSTLGIGLVEGYNEIGFERSLSKPQLRRDTERAMVQVCERTKSKHD 589
Query: 589 VLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
+L ++Q K F+ AR + K++ ++ + E
Sbjct: 590 MLEQSIEQYKEVFIRARREFDKIVTSVSRYLE 621
>gi|440300574|gb|ELP93021.1| DNA topoisomerase 3-alpha, putative [Entamoeba invadens IP1]
Length = 611
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 264/607 (43%), Positives = 388/607 (63%), Gaps = 12/607 (1%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPC-HMLMTSVTGHL 68
VL++AEKPSVA+SVA LSK + + +G+S++N I++F+ R + + ++TSV+GHL
Sbjct: 5 VLHIAEKPSVAQSVAYTLSKGKSKKC-QGKSKFNPIHKFDAEFRDKGMKNQVVTSVSGHL 63
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
MEL+F +R W C+P DL+ APV K+VP K+ + L++ A+ LVLWLDCDREG
Sbjct: 64 MELEFTPEFRNWGMCNPVDLFTAPVAKYVPSRSKETEANLKDVAKGADTLVLWLDCDREG 123
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI+FEVI+VC +VN HL + RA F++L+ EI +A + L P++ +DAVD RQE+DLR
Sbjct: 124 ENISFEVIDVCESVNKHLKVFRAHFNSLVPVEIARAYRTLTPPDKNLSDAVDIRQELDLR 183
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GA+FTRFQT LLK + + D + V+SYG CQFPTLGFV++RY++I++ E+F+ I
Sbjct: 184 TGAAFTRFQTTLLKR-QVPVLKDLK--VISYGACQFPTLGFVIDRYYQIKSFTKEKFYKI 240
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLST 307
C K E F W R LFD + +I+YE + + A +T++ Q+ K + P PL+T
Sbjct: 241 KCIVKKEGIETEFLWDRNRLFDRIACLILYEDALDKVKQAKITEILQKSKTNFKPLPLTT 300
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+K S++F++SS TM +AE LYQ+G ISYPRTET+ + + N ++ +
Sbjct: 301 VDLQKSCSKFFKISSNQTMTIAEKLYQSGLISYPRTETNIYPADMNHTKQLEMFANSNTY 360
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G Y ++LLD G + P +G DK+HPPIHPTK E+ + +Y+ VVR +LA
Sbjct: 361 GEYVKQLLD---GKMKPPRNGKATDKSHPPIHPTKLI--ETGLVGNEKTIYDFVVRSYLA 415
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
+S A G ET + + I E F +G VI +NYLD+Y++ W IP + G+ T
Sbjct: 416 NLSDDARGFETKIGLQIGEESFHANGLVITERNYLDIYKYRKWTEKQIPNFEEGETVDVT 475
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+LT + G T PP L+E +L+ MDK GIGTDAT+ HI K+++R Y + F+PTN
Sbjct: 476 SLTQEMGETSPPKPLTEPELIQLMDKNGIGTDATIAQHIAKIIEREYVVV-IKGGFSPTN 534
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G ALV GYD MG+E +P LR+ E +K++S G +K DV++ + Q + F A K
Sbjct: 535 LGLALVEGYDSMGFEFSRPLLRAETERQLKKISEGEANKDDVVSLFIDQYETLFTRAESK 594
Query: 608 KVKLLEA 614
K L++A
Sbjct: 595 KKCLVDA 601
>gi|389584867|dbj|GAB67598.1| DNA topoisomerase III alpha [Plasmodium cynomolgi strain B]
Length = 646
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/624 (41%), Positives = 377/624 (60%), Gaps = 38/624 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
I+VLNVAEKPSVA ++A ILSK + + ++ S+YN ++ FNY + M +TSVTGH
Sbjct: 4 IHVLNVAEKPSVASAIADILSKGK-MEKKKSCSKYNPVFTFNYKREHETWSMYVTSVTGH 62
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L E FD++YR W + DP +L+ A + +V DKK I+ L++ ++ C L+LWLDCDRE
Sbjct: 63 LTEQKFDDKYRNWINTDPQELFDAEITIYVENDKKKIENNLKKYSKFCNLLILWLDCDRE 122
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I FEVI C +N + ++RA+FSA+ +++I A+ NL PN+ A +VD R+EIDL
Sbjct: 123 GEHICFEVINTCFVMNREIRIKRAQFSAVTEKDILHAINNLKYPNRNLAYSVDVRREIDL 182
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+G+ FTRF T ++ H+ ++SYGPCQFPTLGFVV RY +I+ SE +W+
Sbjct: 183 RMGSIFTRFLT--IRYVHLIKTGTS---IISYGPCQFPTLGFVVNRYMDIKNFVSEYYWS 237
Query: 248 INCSHKSEEGTAT---------------------------FSWMRGHLFDYTSAVIIYEM 280
I + E+G + F+W R L+D+ + V+IYE
Sbjct: 238 IKMQYLYEDGDKSGDEPEWGISKKETKRKKEDTNQNTIVDFTWSRLRLYDHLAVVLIYED 297
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISY 340
++ P +T + + + KY P PL+T+++ K S++F +SS+ M +AE LY GFISY
Sbjct: 298 LLKSPLCRITNIYENQVKKYRPLPLNTLQMTKLVSKHFHISSKQCMNIAEKLYNKGFISY 357
Query: 341 PRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHP 400
PRTET+ F S NL IV E +G YA++L + ++ P G +D+AHPPIHP
Sbjct: 358 PRTETNYFPSSMNLRSIVGELKKSKAFGSYAKKLSE--GNNFKEPRKGKLNDQAHPPIHP 415
Query: 401 TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
K + + + +YEL+ RHFLA S A+G + V I E F G I+ KN
Sbjct: 416 VKNMHKTDKVEEKEWIIYELICRHFLAVCSDDAIGFNSKVVATIGKEEFFCKGLKIVKKN 475
Query: 461 YLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDA 520
YL++Y +E W +IP + Q+F P +L ++ G+T+PP LSE DLLS MDK GIGTDA
Sbjct: 476 YLEIYIYEKWNDKIIPPFQVNQEFYPYSLLIEEGITQPPKYLSECDLLSLMDKYGIGTDA 535
Query: 521 TMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY---DDMGYELWKPNLRSMMESDMK 577
TMH+HI+ + R Y K++ F PTN+G ALV+ Y D+G +L +P+LR+ ME DM
Sbjct: 536 TMHEHIENIQKRNYVFKNSKNLFVPTNLGIALVLSYKKFKDIGVDLTEPSLRAKMEKDMT 595
Query: 578 EVSVGNKSKADVLANCLQQMKACF 601
V+ G K K + + N + MK +
Sbjct: 596 LVASGTKEKDETIRNYIDIMKYIY 619
>gi|17555378|ref|NP_499558.1| Protein TOP-3 [Caenorhabditis elegans]
gi|6686028|sp|O61660.1|TOP3_CAEEL RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|3047013|gb|AAC13567.1| DNA topoisomerase III [Caenorhabditis elegans]
gi|14530655|emb|CAB60518.2| Protein TOP-3 [Caenorhabditis elegans]
Length = 759
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 269/612 (43%), Positives = 373/612 (60%), Gaps = 7/612 (1%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK VAK VA ILS R REGRS++NKIY N + GQ + +TSV+GH+M
Sbjct: 5 LFVAEKNDVAKGVAAILSNGTANR-REGRSKFNKIYTLNTELFGQQTAISVTSVSGHMMN 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F E W + +L+ APVR V + K I++TL E+A+R LV+W DCDREGE
Sbjct: 64 FQFHENMSNWQTASMVELFRAPVRHVVTPEMKLIEQTLREQAQRHDILVVWTDCDREGEA 123
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E+++VCR N L + RARFS + I +A +NL+ ++ AVD R E+DLRIG
Sbjct: 124 IGAEIVKVCRDSNRRLDIFRARFSEITKAAITRAARNLIRLDEKTVAAVDCRSELDLRIG 183
Query: 191 ASFTRFQTMLLKNFHIDSV-TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
++FTR QT+ L+N D + +D + V+SYG CQFPTLGFV +RY I+ SE FW +
Sbjct: 184 SAFTRLQTLHLRNRFRDLLGQNDTSQVISYGSCQFPTLGFVTDRYKMIENFVSEPFWKLI 243
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H E F W R LFD + I+++ C + A V KV ++ K K+ P L T+E
Sbjct: 244 VEHTRESHKVEFLWDRNRLFDRDTVDILHDECKETKEAHVEKVAKKPKSKWRPQALDTVE 303
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK RMS++ TM+VAE LY GFISYPRTET+ F +G NL +VQ+Q WG
Sbjct: 304 LEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETNKFPAGLNLTPLVQQQTQSNIWGD 363
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A +L + NP +G D+AHPPIHP KF+ + + D +K+YELVVRHFLACV
Sbjct: 364 FANEVLQNGV----NPRNGRKSDEAHPPIHPLKFTE-KHQLQGDDWKVYELVVRHFLACV 418
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET+V + + E F SG I YL VY +E WG ++PTY G++F L
Sbjct: 419 SQDAQGEETMVNLTVGTEKFHASGLRIRDMGYLKVYVYEKWGNRLLPTYTEGERFTDFEL 478
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T+ P L+EADL+S MDK GIGTDAT +HI+K+ R Y + + P+ +G
Sbjct: 479 KIGDGKTQAPDFLTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLG 538
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
ALV GYDDMG+ + KP+LR+ +E +KE+ G + K +VL + + +A F+++ K
Sbjct: 539 LALVDGYDDMGFAMSKPDLRANLEIGLKEICDGRRQKQEVLDEQIGKYRAIFVESERKIG 598
Query: 610 KLLEAMGIFFER 621
L +++ + ++
Sbjct: 599 VLSQSLQRYLDK 610
>gi|393245510|gb|EJD53020.1| prokaryotic type I DNA topoisomerase [Auricularia delicata
TFB-10046 SS5]
Length = 613
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 270/615 (43%), Positives = 380/615 (61%), Gaps = 22/615 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A+SV ILS Q R +Y K ++F Y R + +T+V GH
Sbjct: 1 MKVLCVAEKPSIARSVTTILSGGQ-FETRATADKYTKNFDFIY--RPLNANFTVTAVRGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L E DF YRKW + DP DL+ APV V +D K I++ L EAR L++W DCDRE
Sbjct: 58 LKEHDFPSDYRKWSATDPFDLFDAPVESTVSKDGKFIERNLVAEARSADMLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ EVC+ N + +RRARFSA+I ++IHQA QN VD + DAV+AR +DL
Sbjct: 118 GEHIGAEIAEVCQKANRRIQVRRARFSAIIAQQIHQAAQNTVDLDYRQVDAVEARTVLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW- 246
R+GA+FTR QT+ L+N + V+SYGPCQFPTLGFVV RY ++QA E FW
Sbjct: 178 RLGAAFTRLQTLKLQN----QFQELDGQVISYGPCQFPTLGFVVSRYEQVQAFRPEPFWY 233
Query: 247 ---TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
I+ + EE F W RGH+F++ A+ IYEM +++PTA V+ V+++ K+ P
Sbjct: 234 IYLAISPNVDGEETETEFKWRRGHIFEFQVALAIYEMVLEDPTARVSSVKKKSVKKWKPL 293
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K SR R++ + + +AE LYQ GF+SYPRTETD F + ++ +Q
Sbjct: 294 PLTTVELQKAGSRLLRLAPKKVLDLAEGLYQKGFLSYPRTETDQFDPQFDFMSLIDKQKV 353
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
P WG +A L + G + P G DDKAHPPIHPT + + D ++YE + R
Sbjct: 354 DPAWGAFATSLQN---GGFATPRRGKKDDKAHPPIHPTAHAGN---LAGDEKRVYEFITR 407
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
FLAC S+ A G ET +EI GE F T+G +LA+NYL+VY ++ WG +P + G +
Sbjct: 408 RFLACCSKDAEGWETTIEITCGGEEFFTTGLTVLARNYLEVYPYDKWGDRYVPDFEEGAE 467
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--DANT 541
F+P+ L G T P LL+EADL++ MDK GIGTDAT+ HI+ ++DR Y + + NT
Sbjct: 468 FMPSVCELRDGQTTRPSLLTEADLVTLMDKNGIGTDATIAQHIQTIIDREYVMARMEGNT 527
Query: 542 RF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
++ P+ +G ALV GY+ +G++ L KP LR E DM + G K+KA+++ ++Q K
Sbjct: 528 KYLVPSTLGIALVEGYNRIGFDKSLSKPQLRRDTERDMVRICEGVKNKAEMVDQAVEQYK 587
Query: 599 ACFLDARLKKVKLLE 613
F AR +L++
Sbjct: 588 EVFQKARRDFNRLVQ 602
>gi|449546712|gb|EMD37681.1| hypothetical protein CERSUDRAFT_50044 [Ceriporiopsis subvermispora
B]
Length = 1000
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 260/617 (42%), Positives = 381/617 (61%), Gaps = 24/617 (3%)
Query: 6 RPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVT 65
+ + VL VAEKPS+AKS++ ILS Q R+ ++Y K Y+FNY +TSV+
Sbjct: 49 KAMRVLCVAEKPSIAKSISQILSGGQ-FTTRQTANKYIKDYDFNYPQTNS--FFTVTSVS 105
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL + DF+ ++ KW SC+P L+ A + K V +D K + L EA+R Q L++W DCD
Sbjct: 106 GHLFDYDFEPQFSKWMSCNPFSLFDAQIVKSVKKDGKTTAQNLANEAKRAQKLMIWTDCD 165
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGENI EV +VCR N +++++RARFSA+I ++IH A Q+ V+ + ++AV AR E+
Sbjct: 166 REGENIGAEVADVCRKANRNIIVQRARFSAIIAQQIHHAAQHPVELDMAQSNAVQARIEL 225
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ L+ D++ + V+SYGPCQFPTLGFVV RY +++A E F
Sbjct: 226 DLRIGAAFTRLQTLNLQE-RFDALKE----VISYGPCQFPTLGFVVSRYNQVKAFVPEPF 280
Query: 246 WTINCS-----HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
W I S E TF+W RGHLFD A +YEM + P A V +V ++ K+
Sbjct: 281 WYIYLSLTKELSGGEPNEITFTWKRGHLFDLQVAAELYEMVLGAPAARVVRVTAKDTKKW 340
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T++L+K SR ++S + + +AE LYQ GF+SYPRTETD F + ++ +
Sbjct: 341 KPLPLTTVDLQKAGSRLLKISPKKVLDIAERLYQQGFLSYPRTETDQFDPKFDFATLIGK 400
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q P WG +A L G + P G DDKAHPPIHPT ++ + D ++YE
Sbjct: 401 QAADPAWGGFATAL---QGGGFSPPRKGKKDDKAHPPIHPTAHAAN---LAGDEKRVYEY 454
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
+ R FLAC S+ A+G ET VE++ GE F+ +G + +NYL+V+ ++ W +P +
Sbjct: 455 ITRRFLACCSKDALGWETTVEVDYGGEEFTATGLTVRERNYLNVFHYDKWADKELPNFEQ 514
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--D 538
G++F+PT L G T P LL+EADL++ MDK GIGTDAT+ HI+ ++DR Y I+
Sbjct: 515 GEEFVPTVCELREGKTSKPNLLTEADLVTLMDKNGIGTDATIAQHIQTIVDRQYVIERMQ 574
Query: 539 ANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+T++ P+ +G LV GYD +G++ L KP LR E M E+ G K+K D+L ++
Sbjct: 575 GSTKYLVPSTLGIGLVEGYDAIGFDRSLSKPQLRRETERRMVEICEGTKTKNDMLTESIE 634
Query: 596 QMKACFLDARLKKVKLL 612
Q K F +++ +++
Sbjct: 635 QYKDMFTRTQMEFARIV 651
>gi|221058465|ref|XP_002259878.1| DNA topoisomerase III [Plasmodium knowlesi strain H]
gi|193809951|emb|CAQ41145.1| DNA topoisomerase III, putative [Plasmodium knowlesi strain H]
Length = 661
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 267/655 (40%), Positives = 380/655 (58%), Gaps = 62/655 (9%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
PI+VLNVAEKPSVA ++A ILS+ + R ++ S+YN ++ FNY + M +TSVTG
Sbjct: 3 PIHVLNVAEKPSVASAIANILSRGKMER-KKSCSKYNPVFTFNYQRDNETWSMYVTSVTG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL E FD++YR W + DP L+ A + +V DKK I+ L+ ++ C L+LWLDCDR
Sbjct: 62 HLTEQKFDDKYRNWLNTDPQVLFDAEITIYVENDKKTIENNLKRYSKFCNLLILWLDCDR 121
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I FEVI C +N L ++RA+FSA+ +++I A+ NL PN+ A++VD R+EID
Sbjct: 122 EGEHICFEVINTCFVMNRDLRIKRAQFSAVTEKDIIHAINNLKYPNRNLANSVDVRREID 181
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+G+ FTRF T ++ H+ R ++SYGPCQFPTLGFVV RY +I+ +E +W
Sbjct: 182 LRMGSIFTRFLT--IRYVHL---IKTRTNIISYGPCQFPTLGFVVNRYMDIKNFVNEYYW 236
Query: 247 TINCSHKSEEG------------------------------------------TATFSWM 264
+I + E+ A F+W
Sbjct: 237 SIKMQYLWEDAEKSGDESDGDSSAWRKKKTKRKKKNEKEKKNKGKKEDTNQNTIADFTWS 296
Query: 265 RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEH 324
R L+D+ + V+IYE ++ P +T + Q E KY P PL+T+++ K S++F +SS+
Sbjct: 297 RSRLYDHLAVVLIYEELLKNPLCRITNIYQNEVKKYRPLPLNTLQMTKLVSKHFHISSKQ 356
Query: 325 TMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
M +AE LY GFISYPRTET+SF NL IV E + +G YA +L ++
Sbjct: 357 CMNIAEKLYNKGFISYPRTETNSFPISMNLRSIVSELKKNNIFGSYANKLC--QGNNFKE 414
Query: 385 PGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINI 444
P G +DKAHPPIHP K + + +YE + RHFLA S+ A+G + V I
Sbjct: 415 PRKGKLNDKAHPPIHPVKNMQKTDGVEEKEWIIYEFICRHFLAVCSEDAIGFNSKVVATI 474
Query: 445 AGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSE 504
E F G I+ KNYL++Y +E W IP + Q+F P +L ++ G+T+PP LSE
Sbjct: 475 GKEEFFCKGLKIVKKNYLEIYIYEKWNNKNIPPFEVNQEFHPYSLLVEEGITQPPKYLSE 534
Query: 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY---DDMGY 561
+DLLS MDK GIGTDATMH+HI+ + R Y K++ F PTN+G ALV+ Y D+G
Sbjct: 535 SDLLSLMDKYGIGTDATMHEHIENIQKRNYVFKNSKNLFIPTNLGIALVLSYKKFKDIGI 594
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC---------FLDARLK 607
+L P+LR+ ME DM V+ G K+K + + N + MK FLD ++K
Sbjct: 595 DLTDPSLRAKMEKDMTLVASGTKNKEETIRNYIDIMKYIYQEMFNRIDFLDEQIK 649
>gi|71016361|ref|XP_758895.1| hypothetical protein UM02748.1 [Ustilago maydis 521]
gi|46098326|gb|EAK83559.1| hypothetical protein UM02748.1 [Ustilago maydis 521]
Length = 1325
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 269/619 (43%), Positives = 378/619 (61%), Gaps = 32/619 (5%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP--CHMLMT 62
R + +L VAEKPS+AKS+A IL++ R G+ ++ + Y+F Y + G M MT
Sbjct: 93 ARGMRILCVAEKPSIAKSIANILARGHASN-RPGKDKFCRNYDFQYRMPGVQGMVDMTMT 151
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL DF +++ W SC PADL+ APV ++ +D KDI L EAR +++W
Sbjct: 152 SVRGHLTNTDFGPQHKAWFSCPPADLFQAPVITNLSDDAKDIGTNLRLEARNADAVMIWT 211
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I E++ R V ++ + RARFSA+ID +IH A QN V+ + ADAV++R
Sbjct: 212 DCDREGEHIGSEIVAEVRKVRRNIRVMRARFSAIIDSQIHAACQNTVELDWRAADAVESR 271
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
++DLRIGA+FTR QT+ L+N I ++ + R+ V+SYGPCQFPTLGFVV+RY ++
Sbjct: 272 IQLDLRIGAAFTRMQTLALQN-RIPALGEQRH-VISYGPCQFPTLGFVVDRYKKVVHFVP 329
Query: 243 EEFWTINCSHKS---------------EEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTA 287
E FW + HKS E F+W R HLFD + I ++C P A
Sbjct: 330 EPFWLLQV-HKSRSMSGGDPSPDDPPEEIRKVVFNWDRVHLFDKCAVQIFCKLCRDNPDA 388
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDS 347
TV V ++ K+ PYPL+T+EL+K SR R++ + + VAE LYQ GF+SYPRTETD
Sbjct: 389 TVDSVATKQTKKWKPYPLTTVELQKSGSRLLRLTPKRILDVAESLYQKGFLSYPRTETDE 448
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
+ + ++ +Q WG AQRLLD G + P +G ++DKAHPPIHPT +SG
Sbjct: 449 YDKDLDFTSLIAKQTADSAWGNVAQRLLD---GAFERPRNGKNNDKAHPPIHPTSHASG- 504
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
+ D ++Y+ V R FLA A+G +T V I+IAGE F SG VIL +NYL+V+ +
Sbjct: 505 --LTGDDKRVYDYVTRRFLASCWTDAIGNQTSVAISIAGEKFHASGLVILQRNYLEVFTY 562
Query: 468 ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
+ W G ++P +V G+ F PT L + G T PP LL+EADL+S MDK GIGTDAT+ DHI
Sbjct: 563 DKWEGNLLPPFVRGETFRPTRLEMKEGATSPPKLLTEADLVSLMDKNGIGTDATIADHIA 622
Query: 528 KLLDRFYA--IKDANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVG 582
K+++R Y +K+ T + P+ +G LV GY+ + E L KP LR E M + G
Sbjct: 623 KVVERRYVMQVKEGKTTYLVPSTLGIGLVEGYNQLNMEKSLSKPLLRRETEFRMSLICAG 682
Query: 583 NKSKADVLANCLQQMKACF 601
+SKA+ +A L + + F
Sbjct: 683 QRSKAETIAESLDEYRQVF 701
>gi|358057730|dbj|GAA96385.1| hypothetical protein E5Q_03052 [Mixia osmundae IAM 14324]
Length = 882
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 262/620 (42%), Positives = 380/620 (61%), Gaps = 19/620 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP--CHMLMTSVT 65
+ L VAEKPS+A+ + ILS + R R G SR+ YEF+Y + G P ++T+V
Sbjct: 2 VKCLCVAEKPSIARGITEILSGGRS-RTRNGGSRFVNNYEFSYRLEGYPGFTDFVVTAVV 60
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL DFD+ +R W SCD DL+ AP+ +P KD+ + L+ EAR Q L++W DCD
Sbjct: 61 GHLTANDFDDAHRGWRSCDAFDLFDAPIITFIPPKLKDVARNLQNEARTAQILMIWTDCD 120
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I +EV VC VN LV+ RARFSA+I +IHQA Q+ V ++ A AV+AR +
Sbjct: 121 REGEHIGWEVQNVCLKVNPRLVVLRARFSAIIANQIHQACQHAVALDERQASAVEARIML 180
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLR+GA+ TR QT NF + + + V+SYGPCQFP LGFVVE+Y ++ +E F
Sbjct: 181 DLRVGAALTRLQTF---NFQA-AFPELQGSVISYGPCQFPALGFVVEQYERMRNFVAEAF 236
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I + + + T TF+W R LFD A ++++ C+ +P AT+T V+ + K+ P PL
Sbjct: 237 WSIQSTLRRDGATVTFNWARNRLFDREVAGMLHQWCLDDPEATITSVQTKPASKWKPLPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K SR R+S + +++A+ LYQ G +SYPRTETD F N ++++Q
Sbjct: 297 TTVELQKSGSRILRLSPKKVLEIADALYQRGILSYPRTETDQFDPHFNFQELIEKQTQDT 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WGP+AQRL G + P G +D AHPPIHPT ++ + D ++YELV R F
Sbjct: 357 RWGPFAQRL---HRGEFERPRGGRKNDHAHPPIHPTAHANLQG----DEARVYELVTRRF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC + A G +T V ++IA E F+ SG ++L +NYLDVY ++ W G +P + + F+
Sbjct: 410 LACCHKNATGRQTTVRVSIAREEFNASGLIVLERNYLDVYPYDRWEGNALPDFHLNETFL 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR--- 542
P T L G T P LL+EADL++ MDK GIGTDAT+ +HI+ LL+R Y ++ + R
Sbjct: 470 PATCELKEGKTTGPSLLTEADLVNLMDKNGIGTDATIAEHIEHLLERDYISREKDGRSTV 529
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
PT +G LV GY+ +G + L KP+LR M E M + G +++ DV+ L + +
Sbjct: 530 LVPTTLGIGLVEGYNRLGLDNSLSKPHLRRMTEHRMSLICTGQRTQQDVIEETLDEYREM 589
Query: 601 FLDARLKKVKLLEAMGIFFE 620
F+ AR + L + + F E
Sbjct: 590 FIVARRQWQTLTDTVREFSE 609
>gi|327356144|gb|EGE85001.1| DNA topoisomerase [Ajellomyces dermatitidis ATCC 18188]
Length = 630
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 273/625 (43%), Positives = 377/625 (60%), Gaps = 29/625 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR---GQPCHMLMTSVT 65
VL VAEKP++A++VA LS + + Y K YEF+++ GQ C + MTSV
Sbjct: 4 KVLCVAEKPAIARAVAQHLSGGSSRAVSIRGNVYVKNYEFDFTFAPPWGQ-CSVTMTSVI 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL LDFD +YR W+SC P L+ APV V +DK I + + AR+ + L +W DCD
Sbjct: 63 GHLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV R N + ++RARFS I QA QN ++ + A+AV AR E+
Sbjct: 123 REGEHIGTEVRYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQANAVAARIEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ LK+ + +DR V+SYG CQFPTLGFVV+RY+ ++ + E+F
Sbjct: 183 DLRIGAAFTRLQTLQLKS--LGGALEDR--VISYGSCQFPTLGFVVDRYFRVKNFKPEKF 238
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I SH + T F W R HLFD + V+++E C+ TA VTKV ++ K+ P PL
Sbjct: 239 WSIKVSHARDGKTVNFLWRRVHLFDRAAVVVLFERCLTSKTAKVTKVNKKPTRKWRPLPL 298
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ SRY RM S+ MK+AE LY GFISYPRTETD F G +L +V++QI
Sbjct: 299 TTVDLQMMGSRYLRMDSQKVMKIAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQIPSE 358
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG YAQRL++ G + P +G H+DKAHPPIHP F++ S + D +YE V R F
Sbjct: 359 NWGQYAQRLMN---GAFTQPRAGRHNDKAHPPIHPVIFAA-PSALNADERAVYEFVTRRF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQF 484
LAC S+ A G T VEI E+F T+G ++L +NYLDVY ++ W IP + G+ F
Sbjct: 415 LACCSEDAKGESTEVEIKYGDEMFHTNGLLVLERNYLDVYIYDKWESSQEIPPFTLGEAF 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT L G T P L+E +L+ MD GIGTDATM +HI K+ +R Y
Sbjct: 475 EPTEAKLTDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRGSGG 534
Query: 537 -KDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
++ F PT++G ALV GYDD+ L KP LR ME M+E+ G K+K +V
Sbjct: 535 GSNSVQEFIPTHLGVALVEGYDDVVNGLPDSPSLSKPFLRKEMEVRMREICAGTKTKTEV 594
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
+ LQ + F+ + +++ +L+A
Sbjct: 595 VNESLQMYREVFVHTQ-QRIDVLKA 618
>gi|443894350|dbj|GAC71698.1| DNA topoisomerase III alpha [Pseudozyma antarctica T-34]
Length = 1780
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 266/645 (41%), Positives = 387/645 (60%), Gaps = 32/645 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP--CHMLMTSVT 65
+ +L VAEKPS+AKS+AGIL+ R G+ ++ + Y+F Y + G M +TSV
Sbjct: 806 MRILCVAEKPSIAKSIAGILAGGHPSN-RPGKDKFCRNYDFQYRMPGVQGMVDMTVTSVR 864
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL DF Y+ W+SC PADL+ APV +V +D K I L EAR L++W DCD
Sbjct: 865 GHLTNADFGPEYKAWYSCSPADLFTAPVLTNVSDDAKAIGLNLRNEARNADALMIWTDCD 924
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E++ R V ++ + RARFSA+ID +IH A QN V+ + ADAV++R ++
Sbjct: 925 REGEHIGSEIVAEVRKVRRNIRVMRARFSAIIDSQIHAACQNTVELDWRAADAVESRIQL 984
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ L+N HI + + R V+SYGPCQFPTLGFVV+RY ++ E F
Sbjct: 985 DLRIGAAFTRMQTLALQN-HIPAFNEARQ-VISYGPCQFPTLGFVVDRYNKVIEFVPEPF 1042
Query: 246 WTINCSHKSEEGTA---------------TFSWMRGHLFDYTSAVIIYEMCVQEPTATVT 290
W + HK+ + F+W RGHLFD + I+ + C P ATV
Sbjct: 1043 WLLQL-HKTRSMSGGDPAPDDPPDQIRKVVFNWDRGHLFDKLAVEILRDFCRASPLATVD 1101
Query: 291 KVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSS 350
V ++ K+ PYPL+T+EL+K SR R++ + + +AE LYQ GF+SYPRTETD F
Sbjct: 1102 NVNSKQTKKWKPYPLTTVELQKSGSRLLRLTPKRILDIAESLYQKGFLSYPRTETDQFDK 1161
Query: 351 GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW 410
+ + ++ +Q WG AQRLLD G + P +G ++DKAHPPIHPT S S
Sbjct: 1162 EFDFNALIAKQTADGAWGGVAQRLLD---GAFERPRNGRNNDKAHPPIHPT---SHASNL 1215
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW 470
+ D ++Y+ V R FL A+G +T V +++AGE F SG VIL +NYL+V+ ++ W
Sbjct: 1216 TGDDKRVYDYVTRRFLGSCWTDAIGTQTTVNVSVAGEKFHASGLVILQRNYLEVFTYDKW 1275
Query: 471 GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLL 530
G ++P +V G+ F PT L + G T P LL+EADL+S MDK GIGTDAT+ +HI K++
Sbjct: 1276 DGNLLPPFVRGETFTPTRLEMKQGATTAPKLLTEADLVSLMDKNGIGTDATIAEHIAKVI 1335
Query: 531 DRFY--AIKDANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKS 585
+R Y ++K+ T + P+ +G LV GY+ + E L KP LR E M + G ++
Sbjct: 1336 ERQYVMSVKEGKTSYLVPSTLGVGLVEGYNQLNLEKSLCKPVLRRETEFRMSLICAGERT 1395
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQA 630
KA+ +A + + + F + ++ E + + + G++ +A
Sbjct: 1396 KAETIAESVNEYREVFALTNRQFGRIAETVLSYLTDPNAGQEARA 1440
>gi|268572957|ref|XP_002641457.1| C. briggsae CBR-TOP-3 protein [Caenorhabditis briggsae]
Length = 753
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/595 (44%), Positives = 361/595 (60%), Gaps = 7/595 (1%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK VAK VA ILS R +EG+S++NKIY N + GQ + +TSV+GHLM
Sbjct: 5 LFVAEKNDVAKGVAAILSNGTSNR-KEGKSKFNKIYTLNSELFGQRAAISVTSVSGHLMN 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F E W + +L+ APVR V D K I+KTL EEA+R LV+W DCDREGE
Sbjct: 64 WQFHENMSNWQTTSMVELFEAPVRHVVTPDMKLIEKTLREEAQRHDVLVVWTDCDREGEA 123
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E+++VCR N + + RARFS + I +A +NL+ ++ AVD R E+DLRIG
Sbjct: 124 IGAEIVKVCRESNRRIDIYRARFSEITKAAITRAARNLIRLDEKIVAAVDCRSELDLRIG 183
Query: 191 ASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
++FTR QT+ L+N F D + V+SYG CQFPTLGFV +RY I+ SE FW +
Sbjct: 184 SAFTRLQTLHLRNRFSSLLGQSDSSKVISYGSCQFPTLGFVTDRYKLIENFISEPFWKLA 243
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H E F W R LFD I+++ C + A V KV ++ K K+ P L T+E
Sbjct: 244 VEHTREGHKVEFLWDRNRLFDRDVVDILHDECKEAKEAHVEKVTKKPKSKWRPQALDTVE 303
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK RMS++ TM+VAE LY GFISYPRTET+ F G NL +V++Q+ WG
Sbjct: 304 LEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETNKFPPGLNLTPLVEQQVQSTTWGD 363
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A +L P +G D+AHPPIHP F+ + D +K+YELVVRHFLACV
Sbjct: 364 FATEVLQKGV----TPRNGHKSDEAHPPIHPLTFADKNT-LHGDDWKVYELVVRHFLACV 418
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET+V + + E F +SG I YL VY +E WG ++PTY G++F L
Sbjct: 419 SQDAQGEETMVNLRVGSEKFHSSGLRIRDMGYLKVYVYEKWGNRLLPTYNQGERFSDYKL 478
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T+PP LL+EADL++ MDK GIGTDAT +HI+K+ R Y + + P+ +G
Sbjct: 479 KIGDGKTQPPDLLTEADLIALMDKFGIGTDATHAEHIEKIKTREYIGVKPDGKLIPSFLG 538
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
ALV GYDDMG+ + KP+LR+ +E +K++ G + K +VL + + K+ F+++
Sbjct: 539 LALVDGYDDMGFAMSKPDLRANLEMGLKDICDGRRQKQEVLDEQIGKYKSIFVES 593
>gi|402593065|gb|EJW86992.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 795
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 258/606 (42%), Positives = 375/606 (61%), Gaps = 10/606 (1%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-CHMLMTSVTG 66
+ L VAEK AKS+A ILS+ R R+GRSR+NKIY+F ++ P C++ MTSV+G
Sbjct: 22 MRALFVAEKNDAAKSIAAILSRGTSTR-RDGRSRFNKIYQFTANVGQNPGCYVAMTSVSG 80
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL++ DF ++ W L+ V+K +DI+ TL EE R+ LV+W DCDR
Sbjct: 81 HLLQHDFPSSFKNWTETPIKVLFDVNVQKSTIPGMEDIRATLIEEIRKSDLLVIWTDCDR 140
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE I EV+ VC VNC+L + RARFS + + +++A+ NLV +Q DAV+ R E+D
Sbjct: 141 EGEAIGAEVVSVCTQVNCNLDVYRARFSEITNAAVNRALNNLVRLDQRLVDAVECRSELD 200
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR QT+ L+N + ++ D+N+V SYG CQFPTLGF+VERY I+ SE FW
Sbjct: 201 LRIGAAFTRLQTLHLRN-NFGNIFRDKNIV-SYGSCQFPTLGFIVERYKAIKEFISETFW 258
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I+ H ++ F W R LFD+ ++ + C + A V V ++ K K+ P+ L
Sbjct: 259 KISMKHTRDDILVEFFWDRQRLFDHNVVQVLLDDCEEAREARVLSVIRKPKSKWRPFALD 318
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+ELEK A R + S++ TM VAE LY G+ISYPRTET+ F +L+ VQ+Q +
Sbjct: 319 TVELEKLAVRKLKFSAKETMVVAERLYNKGYISYPRTETNKFPKDMDLNIYVQQQTVSGE 378
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ + +P +G D+AHPPIHP KF++ + + LYE +VRHFL
Sbjct: 379 WGDFAQEIAVRGP----SPRNGSKTDEAHPPIHPLKFATANELIGLE-WSLYEFIVRHFL 433
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC+S A G ET V++ + E F+ SG ++ YL+VY+++ W ++P+Y +
Sbjct: 434 ACLSVDAKGQETKVQVRVGNENFTASGLIVEDYGYLNVYKYDKWSDKILPSYRENELITS 493
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
L + G T+PP LL+EADL++ MDK GIGTDAT +HI+ + R YA + + RF P
Sbjct: 494 YQLQITEGQTQPPQLLNEADLIALMDKYGIGTDATHAEHIETIKTRQYAALNNDGRFVPG 553
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
IG ALV GYD MGY + KP++R+ +ES +K + +G +++ DVL + + +A F A
Sbjct: 554 YIGLALVDGYDQMGYAMSKPHMRADLESQLKLICLGQRNRDDVLKEQIARYRAIFEKAE- 612
Query: 607 KKVKLL 612
K+++L
Sbjct: 613 DKIEML 618
>gi|239608834|gb|EEQ85821.1| DNA topoisomerase III [Ajellomyces dermatitidis ER-3]
Length = 632
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 270/625 (43%), Positives = 374/625 (59%), Gaps = 27/625 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR---GQPCHMLMTSVT 65
VL VAEKP++A++VA LS + + Y K YEF+++ GQ C + MTSV
Sbjct: 4 KVLCVAEKPAIARAVAQHLSGGSSRAVSIRGNVYVKNYEFDFTFAPPWGQ-CSVTMTSVI 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL LDFD +YR W+SC P L+ APV V +DK I + + AR+ + L +W DCD
Sbjct: 63 GHLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV R N + ++RARFS I QA QN ++ + A+AV AR E+
Sbjct: 123 REGEHIGTEVRYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQANAVAARIEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ LK+ + +DR + G CQFPTLGFVV+RY+ ++ + E+F
Sbjct: 183 DLRIGAAFTRLQTLQLKS--LGGALEDRVISYVSGSCQFPTLGFVVDRYFRVKNFKPEKF 240
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I SH + T F W R HLFD + V+++E C+ TA VTKV ++ K+ P PL
Sbjct: 241 WSIKVSHARDGKTVNFLWRRVHLFDRAAVVVLFERCLTSKTAKVTKVNKKPTRKWRPLPL 300
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ SRY RM S+ MK+AE LY GFISYPRTETD F G +L +V++QI
Sbjct: 301 TTVDLQMMGSRYLRMDSQKVMKIAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQIPSE 360
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG YAQRL++ G + P +G H+DKAHPPIHP F++ S + D +YE V R F
Sbjct: 361 NWGQYAQRLMN---GAFTQPRAGRHNDKAHPPIHPVIFAA-PSALNADERAVYEFVTRRF 416
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQF 484
LAC S+ A G T VEI E+F T+G ++L +NYLDVY ++ W IP + G+ F
Sbjct: 417 LACCSEDAKGESTEVEIKYGDEMFHTNGLLVLERNYLDVYIYDKWESSQEIPPFTLGEAF 476
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT L G T P L+E +L+ MD GIGTDATM +HI K+ +R Y
Sbjct: 477 EPTEAKLTDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRGSGG 536
Query: 537 -KDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
++ F PT++G ALV GYDD+ L KP LR ME M+E+ G K+K +V
Sbjct: 537 GSNSVQEFIPTHLGVALVEGYDDVVNGLPDSPSLSKPFLRKEMEVRMREICAGTKTKTEV 596
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
+ LQ + F+ + +++ +L+A
Sbjct: 597 VNESLQMYREVFVHTQ-QRIDVLKA 620
>gi|424513003|emb|CCO66587.1| predicted protein [Bathycoccus prasinos]
Length = 751
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 279/683 (40%), Positives = 392/683 (57%), Gaps = 72/683 (10%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI---RGQPCHMLMTSV 64
+ +LNVAEKPSVAK V+ +L +G + R+G S++N+I+EF + M TSV
Sbjct: 39 VKILNVAEKPSVAKEVSRVLCGGRGCQSRQGASKFNRIFEFINPFPINNARNAQMKFTSV 98
Query: 65 TGHLMELDFDE-RYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
TGHLM DF E Y+ W D DL+ A + K VP+DKK++K LE EAR +WL+LWL
Sbjct: 99 TGHLMNYDFTEHEYKSWEHSDARDLFGRARIAKLVPDDKKEVKVNLEREARTSEWLILWL 158
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGENIA EV++VC N L + RARFSAL +++ +A+ NL P++ + AVDAR
Sbjct: 159 DCDREGENIAMEVVDVCLNANRRLKVFRARFSALSYQDVSRALMNLQRPDEAASIAVDAR 218
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSV-----------------TDDRNLVLSYGPCQFP 225
QE+DLR+GA+FTRF T+ +K + ++ D V+SYGPCQFP
Sbjct: 219 QELDLRLGAAFTRFNTLCVKRNGVLALLGENGGGGGERGGGRGNDRDNKTVISYGPCQFP 278
Query: 226 TLGFVVERYWEIQAHESEEFWTINCSHKSEE--------------------------GTA 259
TLGF+V+R W++ AH E+FWTI+ ++ E
Sbjct: 279 TLGFIVQRKWDVDAHVPEKFWTISIGYQMVEGGQQQQQQQQQQRQQRQRRGGGGGGGRVV 338
Query: 260 TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFR 319
F W R +FD A ++E P ATV R QE K+PP+PL+T+E++KR +R R
Sbjct: 339 EFRWNRQRVFDEHLANSLFERVQNAPHATVLSTRGQEIKKWPPHPLNTLEMQKRVNRVLR 398
Query: 320 MSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAA 379
++ E MKVAE+LYQ GFISYPRTETD F N + H +GPYA+ L++
Sbjct: 399 IAPEKIMKVAEELYQKGFISYPRTETDRFPDSFNFLENIALFYNHDTFGPYARELVERDG 458
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKFSSGE--SRWSQDHYKLYELVVRHFLACVSQPAVGAE 437
+R P G DDKAHPPI+P K ++ + W +++ ++Y+ V+RHFLA S+PAVG +
Sbjct: 459 --FRKPPGGHRDDKAHPPIYPAKLATAHEYNGWKRENQQVYDFVLRHFLATCSKPAVGYK 516
Query: 438 TIVEINIAGEVFSTSGRVILAKNYLDVY---------------RFESWGGL-VIPTYVHG 481
T VE++ AGE F +G +I + YL +Y F++W +PT+ G
Sbjct: 517 TTVEVDCAGEGFKANGLMIADRAYLRIYGPGPIFPPDGPRLNPYFDNWTAQEELPTFEDG 576
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLL-DRFYAIKDAN 540
++F P+ L T P +LSE DLL+ M+K GIGTDAT HI K++ +R YA K
Sbjct: 577 ERFQPSHRNLRDSETVKPQMLSEVDLLTLMEKNGIGTDATQAQHIDKVVGERGYAKKVGE 636
Query: 541 TRFAPTNIGEALVMGYDD--MGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
R PTNIGEALV GYD +G+ +W+P R+ ME D+ V G+ +K D + ++ M
Sbjct: 637 NRLVPTNIGEALVAGYDSLQLGF-MWQPTKRAEMEKDVDNVHRGSITKEDAIRKNIEPML 695
Query: 599 ACFLDARLKKVKLLEAMGIFFER 621
F + L+ + F ER
Sbjct: 696 RAFAKCESNEQDLIRIVKRFVER 718
>gi|261203873|ref|XP_002629150.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
gi|239586935|gb|EEQ69578.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
Length = 632
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 270/625 (43%), Positives = 374/625 (59%), Gaps = 27/625 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR---GQPCHMLMTSVT 65
VL VAEKP++A++VA LS + + Y K YEF+++ GQ C + MTSV
Sbjct: 4 KVLCVAEKPAIARAVAQHLSGGSSRAVSIRGNVYVKNYEFDFTFAPPWGQ-CSVTMTSVI 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL LDFD +YR W+SC P L+ APV V +DK I + + AR+ + L +W DCD
Sbjct: 63 GHLTSLDFDSQYRSWNSCPPGRLFDAPVTDSVAKDKLSIAENIRTLARQSKALFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV R N + ++RARFS I QA QN ++ + A+AV AR E+
Sbjct: 123 REGEHIGTEVRYQARKANPRIEVKRARFSNTERAHILQAAQNPIELDDSQANAVAARIEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ LK+ + +DR + G CQFPTLGFVV+RY+ ++ + E+F
Sbjct: 183 DLRIGAAFTRLQTLQLKS--LGGALEDRVISYVSGSCQFPTLGFVVDRYFRVKNFKPEKF 240
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I SH + T F W R HLFD + V+++E C+ TA VTKV ++ K+ P PL
Sbjct: 241 WSIKVSHARDGKTVNFLWRRVHLFDRAAVVVLFERCLTSKTAKVTKVNKKPTRKWRPLPL 300
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ SRY RM S+ MK+AE LY GFISYPRTETD F G +L +V++QI
Sbjct: 301 TTVDLQMMGSRYLRMDSQKVMKIAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQIPSE 360
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG YAQRL++ G + P +G H+DKAHPPIHP F++ S + D +YE V R F
Sbjct: 361 NWGQYAQRLMN---GAFIQPRAGRHNDKAHPPIHPVIFAA-PSALNADERAVYEFVTRRF 416
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQF 484
LAC S+ A G T VEI E+F T+G ++L +NYLDVY ++ W IP + G+ F
Sbjct: 417 LACCSEDAKGESTEVEIKYGDEMFHTNGLLVLERNYLDVYIYDKWESSQEIPPFTLGEAF 476
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT L G T P L+E +L+ MD GIGTDATM +HI K+ +R Y
Sbjct: 477 EPTEAKLTDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRGSGG 536
Query: 537 -KDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
++ F PT++G ALV GYDD+ L KP LR ME M+E+ G K+K +V
Sbjct: 537 GSNSVQEFIPTHLGVALVEGYDDVVNGLPDSPSLSKPFLRKEMEVRMREICAGTKTKTEV 596
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
+ LQ + F+ + +++ +L+A
Sbjct: 597 VNESLQMYREVFVHTQ-QRIDVLKA 620
>gi|167390327|ref|XP_001739303.1| DNA topoisomerase 3-alpha [Entamoeba dispar SAW760]
gi|165897077|gb|EDR24345.1| DNA topoisomerase 3-alpha, putative [Entamoeba dispar SAW760]
Length = 607
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 257/609 (42%), Positives = 375/609 (61%), Gaps = 12/609 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTGH 67
+VL+VAEKPSVA +++ LS+ Q + G S+YN I+EF + C +TSV GH
Sbjct: 3 SVLHVAEKPSVANAISYTLSRGQCQKT-SGLSKYNSIFEFEKEFKNIGKCTHYVTSVAGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L +DF YR W SCDP +L+ AP+ K VP K ++ L+ A++CQ LVLWLDCDRE
Sbjct: 62 LKGIDFTTAYRSWGSCDPEELFTAPIEKSVPASMKKVELNLKNVAKKCQVLVLWLDCDRE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI+FEVIEVC VN + + RA F++L+ EI +A L PN+ ++AVD RQEIDL
Sbjct: 122 GENISFEVIEVCSEVNSKMKVWRAHFNSLVPDEIIKAYNTLTAPNRHMSEAVDVRQEIDL 181
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+FTRFQT LLKN VLSYG CQFPTLGFVV+RY++I+A E F+
Sbjct: 182 RTGAAFTRFQTTLLKN----KSKALEGKVLSYGACQFPTLGFVVDRYYQIKAFTKETFYK 237
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
INC + F W R LFD ++YE ++ +AT+T++ ++ + + P PL+
Sbjct: 238 INCVVEKNSILTEFHWDRNRLFDRLICDLLYEDALEHINSATITEILEKSRTNFKPLPLT 297
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L+K S+YF++SS TM +AE LY +G ISYPRTET+ F S + ++ +
Sbjct: 298 TVDLQKACSKYFKISSNETMTIAEKLYNSGLISYPRTETNIFPSDMDHEKQIKMFQENRI 357
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ Y Q LL+ G +NP +G DK+HPPIHPT+ ++ + S+ K+Y+ +VR++L
Sbjct: 358 YSSYVQELLN---GKIKNPRNGKATDKSHPPIHPTR-NANLNDLSEKERKIYDFIVRNYL 413
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A +S A G ET + + + E F +G +I +NYL+++ F W IP + G++
Sbjct: 414 ANMSDDARGFETKIGLQVGNESFHCNGLMITERNYLNIFPFRKWSDKEIPEFHEGEKVQL 473
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ G T PP L+E +L+ MDK GIGTDAT+ HI+K+ +R Y I + F PT
Sbjct: 474 NCFEVSYGETSPPKPLTEPELIQLMDKNGIGTDATIAQHIQKIQEREYVIVKQGS-FIPT 532
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
N+G ALV GYD MG+E +P LR+ E ++ ++ G +K DV++ ++Q + + A+
Sbjct: 533 NLGLALVEGYDSMGFEFSRPQLRAETEKELTKICSGESNKDDVISTFIEQYEELYERAQY 592
Query: 607 KKVKLLEAM 615
K KL+ A+
Sbjct: 593 NKSKLVNAI 601
>gi|67483198|ref|XP_656880.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56474106|gb|EAL51494.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704214|gb|EMD44500.1| DNA topoisomerase alpha, putative [Entamoeba histolytica KU27]
Length = 607
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/609 (41%), Positives = 374/609 (61%), Gaps = 12/609 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
++L+VAEKPSVA +++ LS+ + G S+YN ++ F + + C +TSV GH
Sbjct: 3 SILHVAEKPSVASAISYTLSRGTCKKT-PGLSKYNSVFSFEHEFKNDGKCTHYVTSVAGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L +DF YR W SCDP +L+ AP+ K VP + K ++ L+ A++CQ LVLWLDCDRE
Sbjct: 62 LKGIDFTTAYRSWGSCDPEELFTAPIEKSVPSNMKKVELNLKSLAKKCQVLVLWLDCDRE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI+FEVIEVC VN + + RA F++L+ EI +A L PN+ ++AVD RQEIDL
Sbjct: 122 GENISFEVIEVCSEVNSKMKVWRAHFNSLVPNEIIKAYNTLTAPNKHMSEAVDVRQEIDL 181
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+FTRFQT LLKN VLSYG CQFPTLGFVV+RY++I+A E F+
Sbjct: 182 RTGAAFTRFQTTLLKN----KSKALEGKVLSYGACQFPTLGFVVDRYYQIKAFTKETFYK 237
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
INC + F W R LFD ++YE ++ +AT+T++ ++ + + P PL+
Sbjct: 238 INCVVEKNSILTEFHWDRNRLFDRLICDLLYEDALEYINSATITEILEKSRTNFKPLPLT 297
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L+K S+YF++SS TM +AE LY +G ISYPRTET+ F S N ++ +
Sbjct: 298 TVDLQKACSKYFKISSNETMNIAEKLYNSGLISYPRTETNIFPSDMNHRKQIEMFQENRI 357
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ Y Q LL+ G +NP +G DK+HPPIHPT+ ++ + S+ K+Y+ +VR++L
Sbjct: 358 YSSYVQELLN---GKMKNPRNGKATDKSHPPIHPTR-NANLNDLSEKERKIYDFIVRNYL 413
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A +S A G ET + + + E F +G +I +NYL+++ F W IP + G++
Sbjct: 414 ANMSDDARGFETKIGLQVGNESFHCNGLMITERNYLNIFPFRKWSDKEIPEFHEGEKVQL 473
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ G T PP L+E +L+ MDK GIGTDAT+ HI+K+ +R Y I + F PT
Sbjct: 474 NCFEVSYGETSPPKPLTEPELIQLMDKNGIGTDATIAQHIQKIQEREYVIVKQGS-FIPT 532
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
N+G ALV GYD MG+E +P LR+ E ++ ++ G +K DV+ ++Q + + A+
Sbjct: 533 NLGLALVEGYDSMGFEFSRPQLRAETEKELTKICSGESNKDDVINTFIEQYEELYERAQF 592
Query: 607 KKVKLLEAM 615
K KL+ A+
Sbjct: 593 NKSKLVNAV 601
>gi|156096432|ref|XP_001614250.1| DNA topoisomerase III alpha [Plasmodium vivax Sal-1]
gi|148803124|gb|EDL44523.1| DNA topoisomerase III alpha, putative [Plasmodium vivax]
Length = 666
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 262/644 (40%), Positives = 376/644 (58%), Gaps = 58/644 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
I+VLNVAEKPSVA ++A ILS+ + + ++ S+YN ++ FNY + M +TSVTGH
Sbjct: 4 IHVLNVAEKPSVASAIADILSRGK-MEKKKSCSKYNPLFTFNYKRGHETWSMYVTSVTGH 62
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L E FD++YR W + DP +L+ A + +V DKK I+ L+ ++ C L+LWLDCDRE
Sbjct: 63 LTEQKFDDKYRNWVNTDPQELFDAEITIYVENDKKKIENNLKNYSKFCSLLILWLDCDRE 122
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I FEVI C A+N + ++RA+FSA+ ++I A+ NL PN+ A +VD R+EIDL
Sbjct: 123 GEHICFEVINTCFAMNREIKIKRAQFSAVTQKDIIHAINNLKYPNRNLAYSVDVRREIDL 182
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+G+ FTRF T ++ H+ ++SYGPCQFPTLGFVV RY +I+ +E +W+
Sbjct: 183 RMGSIFTRFLT--IRYVHLIKTETS---IISYGPCQFPTLGFVVNRYMDIKNFVNEYYWS 237
Query: 248 INCSHKSE---------EGTAT-------------------------------------- 260
I + E EG A+
Sbjct: 238 IKMQYWCEGGGHSGDESEGGASLGRKKRKRNGKNSAVMKNGKKSETMKKMAGASQNTVVD 297
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
F+W R L+D+ + V+IYE ++ P +T + + + KY P PL+T+++ K SR+F +
Sbjct: 298 FTWSRLRLYDHLAVVLIYEELLKNPLCRITNIYENQVKKYRPLPLNTLQMTKLVSRHFHI 357
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
SS+ M +AE LY GFISYPRTET+ F S NL IV E +G YA++L +
Sbjct: 358 SSKQCMNIAEKLYNRGFISYPRTETNYFPSSMNLRSIVAELKKSKVFGSYAKKLCE--GN 415
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
+R P G +D+AHPPIHP K + + + +YEL+ RHFLA S A+G + V
Sbjct: 416 NFREPRKGRLNDQAHPPIHPVKNMHRTDKVEEREWAIYELICRHFLAVCSDDAIGFNSKV 475
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
I E F G I+ KNYL++Y +E W ++P + Q+F P +L +D G+T+PP
Sbjct: 476 VATIGKEEFFCKGLKIVKKNYLEIYIYEKWNDKILPPFQVNQEFYPYSLLVDEGMTQPPK 535
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY---D 557
LSE DLLS MDK GIGTDATMH+HI+ + R Y K+ F PTN+G ALV+ Y
Sbjct: 536 YLSECDLLSLMDKYGIGTDATMHEHIENIQKRNYVFKNKKNLFIPTNLGIALVLSYKKFK 595
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
D+G +L +P+LR+ ME DM V+ G K K + + N + MK +
Sbjct: 596 DIGVDLTEPSLRAKMEKDMTLVASGTKEKDETIRNYIDIMKYIY 639
>gi|407035752|gb|EKE37830.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 607
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 254/609 (41%), Positives = 374/609 (61%), Gaps = 12/609 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
++L+VAEKPSVA +++ LS+ + G S+YN ++ F + + C +TSV GH
Sbjct: 3 SILHVAEKPSVASAISYTLSRGTCKKT-PGLSKYNSVFSFEHEFKNDGKCTHYVTSVAGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L +DF YR W SCDP +L+ AP+ K VP + K ++ L+ A++CQ LVLWLDCDRE
Sbjct: 62 LKGIDFTTAYRSWGSCDPEELFTAPIEKSVPSNMKKVELNLKSLAKKCQVLVLWLDCDRE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI+FEVIEVC VN + + RA F++L+ EI +A L PN+ ++AVD RQEIDL
Sbjct: 122 GENISFEVIEVCSEVNSKMKVWRAHFNSLVPNEIIKAYNTLTAPNKHMSEAVDVRQEIDL 181
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R GA+FTRFQT LLKN VLSYG CQFPTLGFVV+RY++I+A E F+
Sbjct: 182 RTGAAFTRFQTTLLKN----KSKALEGKVLSYGACQFPTLGFVVDRYYQIKAFTKETFYK 237
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
INC + F W R LFD ++YE ++ +AT+T++ ++ + + P PL+
Sbjct: 238 INCVVEKNSILTEFHWDRNRLFDRLICDLLYEDALEYINSATITEILEKGRTNFKPLPLT 297
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L+K S+YF++SS TM +AE LY +G ISYPRTET+ F S N ++ +
Sbjct: 298 TVDLQKACSKYFKISSNETMNIAEKLYNSGLISYPRTETNIFPSDMNHRKQIEMFQENRI 357
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ Y Q LL+ G +NP +G DK+HPPIHPT+ ++ + S+ K+Y+ +VR++L
Sbjct: 358 YSSYVQELLN---GKMKNPRNGKATDKSHPPIHPTR-NANLNDLSEKERKIYDFIVRNYL 413
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A +S A G ET + + + E F +G +I +NYL+++ F W IP + G++
Sbjct: 414 ANMSDDARGFETKIGLQVGNESFHCNGLMITERNYLNIFPFRKWSDKEIPEFHEGEKVQL 473
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ G T PP L+E +L+ MDK GIGTDAT+ HI+K+ +R Y I + F PT
Sbjct: 474 NCFEVSYGETSPPKPLTEPELIQLMDKNGIGTDATIAQHIQKIQEREYVIVKQGS-FIPT 532
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
N+G ALV GYD MG+E +P LR+ E ++ ++ G +K DV+ ++Q + + A+
Sbjct: 533 NLGLALVEGYDSMGFEFSRPQLRAETEKELTKICSGESNKDDVINTFIEQYEELYERAQF 592
Query: 607 KKVKLLEAM 615
K KL+ A+
Sbjct: 593 NKSKLVNAV 601
>gi|403166354|ref|XP_003326221.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375166208|gb|EFP81802.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1124
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/628 (41%), Positives = 386/628 (61%), Gaps = 23/628 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP--CHMLMTSVTGH 67
+L VAEKPS+A+SV ILS NQ R+ +RY K ++F+Y + P +TSV GH
Sbjct: 63 ILCVAEKPSIARSVTEILSGNQ-FTTRQSPNRYTKNFDFHYRLPPSPQLADFTVTSVLGH 121
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L DFD Y+ WH+CDP L+ AP+ + V D I++ L+ EARR L++W DCDRE
Sbjct: 122 LTCTDFDADYKGWHNCDPFSLFDAPIHRFVNPDHTGIERNLKAEARRADKLMIWTDCDRE 181
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL--VDPNQWFADAVDARQEI 185
GE+I E++ VCRAV +++ RARFSA+I +IH A QN +D NQ +A V AR E+
Sbjct: 182 GEHIGSEIVSVCRAVKPGIIVLRARFSAIIPAQIHNACQNAGQLDMNQVYA--VQARMEL 239
Query: 186 DLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
DLRIGA+ TR QTM L+ FH + D ++SYGPCQFPTLGFVV++Y +++A +E
Sbjct: 240 DLRIGAALTRCQTMGLQTRFH--QLADS---LISYGPCQFPTLGFVVDQYDKVKAFVAEA 294
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW I+ + ++ F+W R LFDY +A +++EMC+ EP ATV V + +K+ P P
Sbjct: 295 FWYIHVVLERDDSKVEFNWKRHRLFDYHAAFVLHEMCIDEPEATVKDVNIKPTVKWKPLP 354
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL+K SR ++ + + +AE LYQ G +SYPRTETD F + G++++Q+
Sbjct: 355 LTTVELQKSGSRLLHLTPKTVLDIAEKLYQKGLVSYPRTETDQFDRDFDFMGLIEKQMND 414
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
WG +A R L G + P +G D HPT + + + D ++Y+ + R
Sbjct: 415 SQWGDFATRDLKKGGG-FHTPQNGEKKDITPSTNHPTAHA---NNLTADEKRVYDFITRR 470
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
+LAC S+ A G T V I+IA E F+ +G VI+ +NYL+VY ++ W G ++P + G++F
Sbjct: 471 YLACCSKNATGKTTTVVIDIAAEEFTATGLVIIERNYLEVYVYDKWNGTLLPDFQIGEKF 530
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA--IKDANTR 542
+PT+ L G T P LL+EADL+ MD+ GIGTDAT+ +HI K++DR Y I++ +T+
Sbjct: 531 MPTSCELKEGSTSRPNLLTEADLVGLMDRNGIGTDATIAEHIAKIIDRNYVFKIREGSTQ 590
Query: 543 F-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
+ P+ +G LV GY+ +G + L KP LR E M + G++SK DVL + + +
Sbjct: 591 YLVPSTLGIGLVEGYNAIGLDKSLSKPQLRRETEDRMSLICEGSRSKGDVLTQTIDEYRE 650
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGED 627
F+ R ++E + + +GG+D
Sbjct: 651 VFIRTRRAFGTIVEQVARYINS-AGGQD 677
>gi|312072253|ref|XP_003138981.1| DNA topoisomerase III [Loa loa]
gi|307765852|gb|EFO25086.1| DNA topoisomerase III [Loa loa]
Length = 800
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/607 (42%), Positives = 375/607 (61%), Gaps = 10/607 (1%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-RGQPCHMLMTSVT 65
P+ L VAEK AKS+A ILS+ R R+GRSR+NKIY+F ++ + C++ MTSV+
Sbjct: 26 PMRALFVAEKNDAAKSIAAILSRGTSTR-RDGRSRFNKIYQFVANVGQNSDCYVAMTSVS 84
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL++ F ++ W L+ ++K +D+K TL EE R+ LV+W DCD
Sbjct: 85 GHLLQHSFPASFKNWTETPIKMLFDVNIQKSTIPGMEDVKATLVEEIRKSDLLVIWTDCD 144
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE I EV+ VC VN +L + RARFS + + +++A+ NLV +Q DAV+ R E+
Sbjct: 145 REGEAIGAEVVSVCTEVNRNLDVYRARFSEITNTAVNRALNNLVRLDQRLVDAVECRSEL 204
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ L+N + ++ D+N+V SYG CQFPTLGF+VERY I+ SE F
Sbjct: 205 DLRIGAAFTRLQTLHLRN-NFANIFRDKNIV-SYGSCQFPTLGFIVERYQAIKEFISETF 262
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I+ H E+ F W R LFD ++ + C + A V V ++ K K+ P L
Sbjct: 263 WKISMKHTREDIMVEFVWDRQRLFDRDVVQVLLDDCEEAREARVLSVIRKPKSKWRPVAL 322
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+ELEK A R + S++ TM VAE LY G+ISYPRTET+ F +L+ VQ+Q
Sbjct: 323 DTVELEKLAVRKLKFSAKETMVVAERLYNKGYISYPRTETNKFPKDIDLNIYVQQQTVSG 382
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG +AQ + H +P +G D+AHPPIHP KF++ + + LYE +VRHF
Sbjct: 383 EWGEFAQEVAAHGP----SPRNGSKTDEAHPPIHPLKFATTNELIGLE-WSLYEFIVRHF 437
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC+S A G ET V++ + E F+ SG ++ YL+VY+++ WG ++P+Y +
Sbjct: 438 LACLSVDAKGQETKVQVRLGNENFTASGLIVEDYGYLNVYKYDKWGDKILPSYRENEIIT 497
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
L + G T+PP LL+EADL++ MDK GIGTDAT +HI+ + R YA +++ RF P
Sbjct: 498 DYQLQITEGQTQPPQLLNEADLIALMDKYGIGTDATHAEHIETIKTRQYAALNSDGRFVP 557
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
IG ALV GYD MGY + KP++R+ +ES +K + +G +++ DVL + + +A F A
Sbjct: 558 GYIGLALVDGYDRMGYAMSKPHMRADLESQLKLICLGQRNRDDVLREQIARYRAIFEQAE 617
Query: 606 LKKVKLL 612
KV++L
Sbjct: 618 -DKVQML 623
>gi|358255314|dbj|GAA57027.1| DNA topoisomerase III, partial [Clonorchis sinensis]
Length = 1106
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/705 (39%), Positives = 389/705 (55%), Gaps = 70/705 (9%)
Query: 36 REGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRK 95
REG S++NKIYEF Y+ G M+MTSV+GHL+ +F ++ WH+ DP L+ APV K
Sbjct: 1 REGLSKFNKIYEFTYNFGGAHATMVMTSVSGHLLNYEFSPAFKSWHASDPLVLFDAPVSK 60
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSA 155
V +D + IK+TL+ E RC L++W DCDREGENI E++ VCR V ++ + RA+FS
Sbjct: 61 GVIKDGEPIKETLQREVGRCNRLIIWTDCDREGENIGVEIVNVCREVKPNIEVFRAKFSE 120
Query: 156 LIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNL 215
+ I +AV L P+ + AVD RQE+DLRIGA+FTRFQT+ L+ +++ N
Sbjct: 121 ITPVAITRAVNELSVPDYRVSAAVDGRQELDLRIGAAFTRFQTLRLRRVFPRALS---NQ 177
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAV 275
++SYG CQFPTLGFVVER+ E+ E FW I + + F W RG LFD+ +
Sbjct: 178 LISYGSCQFPTLGFVVERFREVDRFIPEPFWRIVVTAEYNGKAVDFQWKRGRLFDHDACK 237
Query: 276 IIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA 335
YE ++ V +V ++ K K P L T+ELEK A+R R+ ++ M++AE LY
Sbjct: 238 AYYEHLLENRYGQVVEVVKRPKSKLRPVALDTVELEKLATRKLRIGAKAVMQLAERLYTR 297
Query: 336 GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395
GFISYPRTET+ F +L +V+ Q W +A R+L NP +G DKAH
Sbjct: 298 GFISYPRTETNIFPPNLDLAELVRVQTHDNRWSDFASRILRTGV----NPRNGKSTDKAH 353
Query: 396 PPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA---------- 445
PPIHP K +G D +L+EL+ RHFLAC+S A GAET+V + +
Sbjct: 354 PPIHPLKAGAG---LQGDEARLFELITRHFLACISADAQGAETLVRLCVGKPSVPDASSR 410
Query: 446 --------GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTR 497
GE+F G VIL NYL+VY ++ W +P + G +PT + + SG T
Sbjct: 411 STLLSSEDGEIFDAKGLVILQSNYLEVYIYDRWVERDMPDFQLGAWLLPTNIEILSGQTS 470
Query: 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
PPPLL+EADL++ MD+ GIGTDAT +HI+ + R Y + P +G LV GYD
Sbjct: 471 PPPLLTEADLIALMDRHGIGTDATHAEHIETIKQRLYVGLEQGKFLVPGQLGMGLVEGYD 530
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGI 617
MG+E+ KP+LR+ +E+D++ + G K+K +VL L++ K F A + +L +A+ +
Sbjct: 531 SMGFEMSKPHLRAELEADLRLICDGRKTKDEVLHRHLEKYKRLFQQAVAQAFRLDQALAV 590
Query: 618 FFER---------WSGGEDQQAAGE--------VVRQCGICQESNMVLKKSR-------- 652
E+ S GE +G+ V C C + +VLK+ R
Sbjct: 591 RLEQPAENVSDMTGSIGEISAISGQHSCDTLTSHVTTCPSCSRA-VVLKQKRSPQHPLSE 649
Query: 653 ----DGNL------------MVGCLAFPQCRNAVWLPGSVSEAAV 681
D N + C +P CR AVW P SV A V
Sbjct: 650 VPSNDSNFSSRSDTGRANSWFLSCTGYPLCRYAVWFPDSVVHARV 694
>gi|392570043|gb|EIW63216.1| prokaryotic type I DNA topoisomerase [Trametes versicolor FP-101664
SS1]
Length = 961
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 261/620 (42%), Positives = 374/620 (60%), Gaps = 24/620 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS++KS+ ILS Q R R++Y K Y+FNY +TSVTGH
Sbjct: 1 MRVLCVAEKPSISKSITQILSGGQ-FTTRNSRNKYIKNYDFNYPQTNS--FYTVTSVTGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ME DF+ Y KW SCDP L+ APV V +D I + L+ EARR Q L++W DCDRE
Sbjct: 58 VMEHDFNIMYSKWTSCDPFALFEAPVECRVKKDADTIAENLKTEARRAQLLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI E++++CR N ++ +RRARFSA+I ++IH A QN V + A+AV+ R +DL
Sbjct: 118 GENIGAEIMKICRKANANITVRRARFSAIIAQQIHHAAQNPVQLDMAQANAVETRILLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIG++FTR QT+ L+N H + ++SYGPCQFPTLGFVV RY +++ + E FW
Sbjct: 178 RIGSAFTRLQTLNLQNRH----EALKRELISYGPCQFPTLGFVVARYNKLKNFKPEPFWY 233
Query: 248 INCSHKSEEGT------ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
I S T F+W RGH+FD +A+ +Y+ + A V+KV ++ K+
Sbjct: 234 IYLSLTRPSATDSDGEETVFTWRRGHIFDVNNAMALYDAALAHAMARVSKVTVKDTKKWK 293
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T++L+K SR ++S + + +AE LYQ GF+SYPRTETD + + ++ +Q
Sbjct: 294 PLPLTTVDLQKAGSRLLKISPKRVLDIAESLYQRGFLSYPRTETDVYDPQFDFMTLIGKQ 353
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
P WG +A L + G + P G HDD AHPPIHPT + + D ++YE +
Sbjct: 354 TADPAWGGFAGGLQN---GGFNAPRKGKHDDHAHPPIHPTAHAGN---LAGDEKRVYEYI 407
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
R FLA S+ A G T +++ E F +G VI +NYLDV+ ++ W +P + G
Sbjct: 408 TRRFLASCSKDATGWLTTIDVQYGEEEFYATGLVIRERNYLDVFPYDKWADKEVPNFQEG 467
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI---KD 538
+ F+PT LD G T P LL+EADL+S MD+ GIGTDAT+ HI+ ++DR Y I +
Sbjct: 468 EAFVPTECRLDEGQTSKPTLLTEADLVSLMDEHGIGTDATIAQHIQTIIDRGYVIERMQG 527
Query: 539 ANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
A P+ +G LV GYD +G++ L KP LR E M ++ G KSK +VLA +++
Sbjct: 528 ATKYLVPSTLGIGLVEGYDAIGFDHSLSKPELRRETEMRMVDICGGVKSKNEVLAESIER 587
Query: 597 MKACFLDARLKKVKLLEAMG 616
K F+ +++ KL+ A+G
Sbjct: 588 YKEMFMRTKIEFEKLVAAVG 607
>gi|426192057|gb|EKV41995.1| hypothetical protein AGABI2DRAFT_154568 [Agaricus bisporus var.
bisporus H97]
Length = 703
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/603 (43%), Positives = 367/603 (60%), Gaps = 22/603 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS++KS++ ILS + +S Y K YEF Y ++T V+GH
Sbjct: 1 MRVLCVAEKPSISKSISQILSGGR-YTTHNTQSPYVKNYEFEYPQTN--SSFIVTCVSGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+E DF + +RKWHSC P +L+ AP+ V K I++ L +ARR L++W DCDRE
Sbjct: 58 LLEHDFTDAHRKWHSCSPGELFDAPIESKVGPKMKPIEQNLLAQARRVATLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E++ VCR N +LV++RARFSA+I ++IH+A Q V+ + ADAV+AR +DL
Sbjct: 118 GEHIGTEIVSVCRRANRNLVVKRARFSAIIAQQIHRAAQQPVELDLAQADAVEARILLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR QT+ L+ V ++SYGPCQFPTLGF V+RY +++ E+FW
Sbjct: 178 RIGAAFTRMQTLSLQT----QVQQLAEKIVSYGPCQFPTLGFAVQRYNQVKNFIPEDFWY 233
Query: 248 INCSHKSEEGTA----TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
I SH S+ FSW RGHLFD ++YE ++ P A V KV +E K+ P
Sbjct: 234 IFLSHTSDTPMGPRETAFSWNRGHLFDEAVVAVLYEHVLEFPNARVAKVVNKETKKWKPL 293
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K SR +M+ + + +AE LYQ GF+SYPRTETD F + ++Q+Q
Sbjct: 294 PLTTVELQKAGSRLLKMAPKKVLDIAEKLYQQGFVSYPRTETDQFDPQFDFMSLIQKQKA 353
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+WG +AQ L G + +P G HDDKAHPPIHPT + + D ++YE + R
Sbjct: 354 DTNWGNFAQSL---EQGGFTSPRKGKHDDKAHPPIHPTAHAGN---LTGDEKRVYEYIAR 407
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
FLAC S+ A G +T VE+ GE F +G VIL NYLDVY ++ W IP Y G+
Sbjct: 408 RFLACCSKDAEGWQTTVEVVCGGEFFHATGLVILKTNYLDVYPYDKWSDHPIPEYKEGES 467
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--DANT 541
F PT + SG T P LL+EADL++ MDK GIGTDAT+ HI+ ++DR Y I+ + +T
Sbjct: 468 FRPTCCEMRSGKTSKPQLLTEADLVTLMDKNGIGTDATIAQHIQTIVDREYVIERMEGST 527
Query: 542 RF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
++ P+ +G ALV GYD +G + + KP LR E M V +K +L L+Q K
Sbjct: 528 KYLVPSTLGVALVEGYDQIGLDRSVSKPQLRRETERRMVLVGQRTITKQAMLDQALEQYK 587
Query: 599 ACF 601
F
Sbjct: 588 EMF 590
>gi|226293455|gb|EEH48875.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
Length = 632
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/625 (42%), Positives = 377/625 (60%), Gaps = 27/625 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+L VAEKP++AK+VA LS + L IR N ++F ++ C + MTSV G
Sbjct: 4 KILCVAEKPAIAKAVAQHLSGGALRTLSIRGNVFVKNYEFDFTFAPPWGRCSVTMTSVIG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL LDFD +YR W+SC P L+ APV+ VP+DK+ I + ++ AR + + +W DCDR
Sbjct: 64 HLTGLDFDSQYRGWNSCPPGRLFDAPVQVSVPKDKQKIAENIQTLARHSKAIFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV R N + ++RARFS + A N ++ +++ A+AV AR E+D
Sbjct: 124 EGEHIGTEVRYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQANAVAARIELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR QT+ LK+ + V +DR ++SYG CQFPTLGFVV+RY+ ++ + E FW
Sbjct: 184 LRIGAAFTRLQTLQLKS--LGGVLEDR--IISYGSCQFPTLGFVVDRYFRVKNFKPEPFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I SH + T F W R H+FD +AV+++E C+ TA VTKV ++ K+ P PL+
Sbjct: 240 AIKVSHLRDGKTVNFLWRRVHVFDRAAAVVLFERCLSAKTAKVTKVNKKPTRKWRPLPLT 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L+ S+Y RM S+ MK+AE LY GFISYPRTETD F G +L +V++QI D
Sbjct: 300 TVDLQMMGSKYLRMDSQKVMKIAEGLYTKGFISYPRTETDQFDKGIDLKKLVEKQISSED 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG YAQRL+D G + P +G H+D AHPPIHP +++ + S+D ++YE V R FL
Sbjct: 360 WGQYAQRLMD---GAFTQPRAGRHNDNAHPPIHPVIYAAPAALSSEDERRVYEFVSRRFL 416
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFI 485
AC S+ A G T +EI E+F G ++L +NYLDVY ++ W +P + G+ F
Sbjct: 417 ACCSEDAKGESTEIEIKYGDEIFHAHGLLVLERNYLDVYVYDKWESSQEMPVFTVGEVFE 476
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--------K 537
PT + G T P L+E +L+ MD GIGTDATM +HI K+ +R Y +
Sbjct: 477 PTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRSGGGR 536
Query: 538 DANT--RFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
NT F PT +G ALV GYD++ L KP LR ME M+E+ G KSK +V
Sbjct: 537 GNNTVQEFIPTQLGVALVKGYDNVVNGLPDSPSLSKPFLRKEMELRMREICAGTKSKTEV 596
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
+ L + F+ + +++++L+A
Sbjct: 597 VNESLHMYREVFIHTQ-QRIEVLKA 620
>gi|240280657|gb|EER44161.1| DNA topoisomerase III [Ajellomyces capsulatus H143]
Length = 630
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 275/635 (43%), Positives = 378/635 (59%), Gaps = 32/635 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR---GQPCHMLMTSVT 65
+L VAEKP++A+ VA LS + + + K YEF+++ GQ C ++MTSV
Sbjct: 4 KILCVAEKPAIARVVAQHLSGGSSRVVSIRGNVFVKNYEFDFTFAPPWGQ-CSVIMTSVI 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL L+FD RYR W+SC P L+ APV V +D I + + AR + L +W DCD
Sbjct: 63 GHLTSLEFDSRYRGWNSCPPGRLFDAPVVDSVAKDNLTIAENIRTLARNSKALFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV R N + ++RARFS I QA N ++ + A+AV AR E+
Sbjct: 123 REGEHIGTEVRYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQANAVAARIEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ LK+ + V +DR V+SYG CQFPTLGFVV+RY+ ++ + E+F
Sbjct: 183 DLRIGAAFTRLQTLQLKS--LGGVLEDR--VISYGSCQFPTLGFVVDRYFRVKNFKPEKF 238
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
WTI SH + T F W R HL+D + VI++E C+ TA VTKV ++ K+ P PL
Sbjct: 239 WTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFERCLTSKTAKVTKVHKKPTRKWRPLPL 298
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ SRY RM S+ MK+AE LY GFISYPRTETD F G +L ++++QI
Sbjct: 299 TTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFISYPRTETDQFDKGIDLKKLIEKQIPSE 358
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG YAQRL++ G + P +G H+DKAHPPIHP F++ + S D +YE V R F
Sbjct: 359 NWGQYAQRLIN---GSFTQPRAGHHNDKAHPPIHPVIFAA-PTVLSNDERLVYEFVTRRF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQF 484
LAC S+ A G T VEI E+F T G ++L +NYLDVY ++ W IP + G+ F
Sbjct: 415 LACCSEDAKGESTEVEIKYGDEIFHTHGLLVLERNYLDVYVYDKWESSQEIPPFTLGEVF 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT + G T P L+E +L+ MD GIGTDATM DHI ++ +R Y
Sbjct: 475 EPTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMADHIARIKEREYVATRPRGGGR 534
Query: 537 -KDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
+A F PT +G ALV GYD++ L KP LR ME M+E+ VG KSK +V
Sbjct: 535 GNNAVQEFIPTQLGVALVEGYDNVVNGLPDSPSLSKPFLRKEMELRMREICVGTKSKMEV 594
Query: 590 LANCLQQMKACFLDARLKKVKLLEAM---GIFFER 621
+ LQ + F+ + +++ +L+A IF ER
Sbjct: 595 VNESLQMYREVFVHTQ-QRIDILKAACRKYIFEER 628
>gi|323456520|gb|EGB12387.1| hypothetical protein AURANDRAFT_20044, partial [Aureococcus
anophagefferens]
Length = 627
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/630 (44%), Positives = 381/630 (60%), Gaps = 28/630 (4%)
Query: 6 RPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCH------M 59
R I L+VAEKPSVAK VA LSK R+G S YN++++F G P H
Sbjct: 3 RLIRALHVAEKPSVAKKVAEHLSKGVACNNRQGPSVYNRLFDFETG--GPPSHGACRVRH 60
Query: 60 LMTSVTGHLMELDFDERYRKWHSCDPADLY---HAPVRKHVPEDKKDIKKTLEEEARRCQ 116
++TSVTGHLM +F+E + KWH+C P DL + V V E+K +K+ LE+EAR
Sbjct: 61 VVTSVTGHLMSTEFEEPHNKWHACAPRDLLCEDLSRVEWTVAEEKAPLKRQLEDEARAAD 120
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
WLVLWLDCDREGE IAFEV++VCR + ++ L RA+FS++ ++EI +A ++L P++ A
Sbjct: 121 WLVLWLDCDREGEAIAFEVVDVCRRIKPNVDLWRAKFSSVDEKEILKAWRSLGRPDKRKA 180
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
DAV AR E+DLR GA+FTRFQT ++ + + V+SYGPCQFPTLGF+V R E
Sbjct: 181 DAVAARCELDLRSGAAFTRFQTFRVQGKYAGVAEEG---VVSYGPCQFPTLGFIVARQQE 237
Query: 237 IQAHESEEFWTINCSHKSEEGT--ATFSWMRGHLFDYTSAVIIYEMCVQ-EPTATVTKVR 293
I AH++ +FW ++ G + W R +FD +A + ++ CV + + KV
Sbjct: 238 IDAHDARDFWRVDMETGGSAGAPRVRWDWRRKRVFDVGAAHVFFDGCVAGKDQGVLEKVE 297
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+ K P PLST+EL+KRASR+ ++ S TM+VAE LYQ G++SYPRTET+ F +
Sbjct: 298 AKPAAKPRPLPLSTLELQKRASRWLKLGSAETMEVAEALYQRGYVSYPRTETELFRDTCD 357
Query: 354 LHGIVQEQIGHPDWGPYAQRLL-----DHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES 408
+ +V Q +G +A +LL D A LW P G DD+AHPPIHPTK +
Sbjct: 358 VRELVDRQRPDGRFGTFAAQLLDLPPDDRRAFLW--PRQGAKDDEAHPPIHPTKAVAANE 415
Query: 409 RWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFE 468
++ K++EL+ RHFLAC ++ A G +T + GE F G ++ +NYLDVY +E
Sbjct: 416 LQGKE-AKVFELIARHFLACCARDARGRQTNATAQLGGERFDARGLMVDERNYLDVYPYE 474
Query: 469 SWGGLVIPTYVHGQQFI-PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
SW +P + G P+ L L T+PP L+EADLLS MD GIGTDATM DHIK
Sbjct: 475 SWSTATLPPFFAGDALPRPSALNLARSRTQPPRGLTEADLLSKMDAHGIGTDATMADHIK 534
Query: 528 KLLDRFYAIKDANTR--FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
+L R YA++D F PT +G ALV YD MG L P LR+ +E+D+ V+ G KS
Sbjct: 535 TVLTRDYALRDNAPPHVFRPTPLGSALVEAYDAMGMRLNLPQLRAALEADVALVASGAKS 594
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEAM 615
K VLA+CL+ M+ F KL +AM
Sbjct: 595 KDAVLADCLRTMRDSFDAVSRDVAKLDDAM 624
>gi|405122849|gb|AFR97615.1| DNA topoisomerase type I [Cryptococcus neoformans var. grubii H99]
Length = 959
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/638 (41%), Positives = 378/638 (59%), Gaps = 28/638 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-----RGQPCHMLMT 62
+ VL VAEKPS+AKS+ ILS + R GR +Y + Y+F Y++ G+ + +T
Sbjct: 1 MRVLCVAEKPSIAKSITEILSGGR-WDTRNGRHQYIRNYDFLYNLAPPLGNGRGANFTVT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
+V GHL DFD+ +RKW SCDP L+ APV V + K ++ L+ EAR L++W
Sbjct: 60 AVLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQAEARNADILMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I EV+ C+ VN +++++RARFSA+I +IHQA + D + ADAV R
Sbjct: 120 DCDREGEHIGSEVVAACKKVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQADAVATR 179
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
+DLRIG++FTR TM L+ V D ++SYGPCQFPTLGFVVE+Y +QA
Sbjct: 180 ISLDLRIGSAFTRLTTMTLQV----RVPDLAEQLISYGPCQFPTLGFVVEQYNRVQAFVP 235
Query: 243 EEFWTINCS-----HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
E FW I + E T F W R HLFD A ++YE C P A V KV +
Sbjct: 236 ETFWYIFVALEREHEDGEPSTVEFRWKRNHLFDLDLAAVLYEQCTVSPQARVLKVESKPA 295
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K+ P PL+T+EL++ SR M+ + + +AE LYQ G +SYPRTETD + + +
Sbjct: 296 TKWKPLPLTTVELQQSGSRLLHMTPKQILDLAEKLYQKGIVSYPRTETDQYDPKFEFNPL 355
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+Q+Q WG YAQ+LLD G ++ P +G +DKAHPPIHPT + D ++
Sbjct: 356 IQKQTLDNQWGAYAQKLLD---GAFQRPRNGRKNDKAHPPIHPTAHAGN---LEGDERRV 409
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
+EL+ R FLA S A G T VEI+IA E+FST+G V+L +NYL+VY ++ W +P
Sbjct: 410 FELITRRFLASCSANAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPN 469
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ G+ FIP + L G T P LL+EADL+ MDK GIGTDAT+ +HI K+++R Y +
Sbjct: 470 FEEGEVFIPNVIDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTE 529
Query: 538 DANTR---FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
R P+ +G LV G++ +G++ L KP+LR E M+ + G + K ++L
Sbjct: 530 KQEARIKYLVPSTLGVGLVEGFNAIGFDRSLSKPHLRRETEHRMQLICDGVRGKREILQT 589
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQA 630
+++ K F+ AR + +++ + + GE Q+A
Sbjct: 590 TIEEYKEVFVKARREFQTVIDCVENYLH--GAGEAQEA 625
>gi|213410242|ref|XP_002175891.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
gi|212003938|gb|EEB09598.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
Length = 621
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/609 (42%), Positives = 362/609 (59%), Gaps = 24/609 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ +L VAEK S+AKSVA IL R R+ +S+Y K Y+F+Y GQ C++ MT+V+
Sbjct: 1 MRILCVAEKNSIAKSVASILGGGH-FRRRDTKSKYIKNYDFDYDFGGQLGDCNVTMTAVS 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL E F Y W S L+ A +R V ++ + + EA +L +W DCD
Sbjct: 60 GHLTEASFPPEYSSWSSVPQEVLFDAQIRISVSKNSAPLADNIRREASNADYLYIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE I E+ V R+ N + + RA F+ L I +A +N + NQW ADAV AR E+
Sbjct: 120 REGEYIGTEISNVARSGNSRIRVLRADFNNLERTHIIRAARNPRNLNQWAADAVAARIEL 179
Query: 186 DLRIGASFTRFQTMLL-KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
D R+GA FTR QT+ L K F I + V+SYGPCQFPTLGFVV+R+ ++ E+
Sbjct: 180 DFRLGAIFTRIQTLQLQKAFEIL-----KKRVISYGPCQFPTLGFVVDRWQRVEDFLPEQ 234
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW+I + + T TF+W R +FD+ +A++ E C++ A VT V Q+ K KY P P
Sbjct: 235 FWSIKLQDRRQAKTVTFNWKRNRVFDHLAALVYLERCLEAKVAKVTNVVQKPKTKYKPLP 294
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL K ++ R+S++ T+++AE LY GF+SYPRTETD F G +L ++ +Q
Sbjct: 295 LTTVELTKLGPKFLRISAKKTLEIAEHLYTNGFVSYPRTETDQFDPGMDLQTLISKQTSD 354
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P WG +A LL +G +RNP SG H+DKAHPPIHP + + SQDH+K+Y+ + R
Sbjct: 355 PSWGTFASDLL---SGNFRNPRSGSHNDKAHPPIHPIAHVTQNALPSQDHWKVYQFITRR 411
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQ 483
FLAC S A GAETIVE+ + E FS SG +L NYLDVY +E W +P Y +
Sbjct: 412 FLACCSDHARGAETIVEVTMGDEQFSQSGLTVLEHNYLDVYIYEKWNSSAQLPVYEMNDE 471
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN--- 540
F+P + + G T P L+E +L+S MD GIGTDATM +HI+K+ +R Y +K
Sbjct: 472 FVPRQVNIIEGATTSPTYLTEPELISLMDANGIGTDATMAEHIEKVQEREYVLKRKRKGK 531
Query: 541 ------TRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
+ F PT++G ALV GYD++G E L KP LR ME +K + G SK ++
Sbjct: 532 GSGAGVSEFVPTSLGVALVKGYDEIGLEWSLTKPFLRREMEVQLKNIEKGQSSKNVLVEV 591
Query: 593 CLQQMKACF 601
L Q + F
Sbjct: 592 TLTQFRDVF 600
>gi|403275443|ref|XP_003929454.1| PREDICTED: DNA topoisomerase 3-alpha [Saimiri boliviensis
boliviensis]
Length = 923
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/508 (48%), Positives = 340/508 (66%), Gaps = 10/508 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R R+ +++++I +Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRRDHLTKWDRIEPADYYVYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPSLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNS---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G +F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGFRFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGI 516
+ + G T PP LL+EADL++ M+K GI
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGI 532
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 611 LLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
L EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP+C
Sbjct: 549 LDEALAQYFGNGTEVAQQEEIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPEC 607
Query: 667 RNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLR 726
R+A+W P SV EA+ + C C P PVY ++ KF++ +PP + + CIGGCDETLR
Sbjct: 608 RSAMWFPDSVLEASRDGSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDETLR 667
Query: 727 QLIEICGTGSRIPARGRGPTASSNNGQQSN 756
+++++ SR P R P+ Q N
Sbjct: 668 EILDL--RFSRGPPRASQPSGRLQANQSLN 695
>gi|134116726|ref|XP_773035.1| hypothetical protein CNBJ3110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255655|gb|EAL18388.1| hypothetical protein CNBJ3110 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1059
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 260/638 (40%), Positives = 378/638 (59%), Gaps = 28/638 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-----RGQPCHMLMT 62
+ VL VAEKPS+AKS+ ILS + R GR +Y + Y+F Y++ G+ + +T
Sbjct: 1 MRVLCVAEKPSIAKSITEILSGGR-WDTRNGRHQYIRNYDFLYNLAPPLGNGRGANFTVT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
+V GHL DFD+ +RKW SCDP L+ APV V + K ++ L+ EAR L++W
Sbjct: 60 AVLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQIEARNADILMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I EV+ C+ VN +++++RARFSA+I +IHQA + D + ADAV R
Sbjct: 120 DCDREGEHIGSEVVAACKKVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQADAVATR 179
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
+DL++G++FTR TM L+ V D ++SYGPCQFPTLGFVVE+Y +QA
Sbjct: 180 ISLDLKVGSAFTRLTTMTLQV----RVPDLAEQLISYGPCQFPTLGFVVEQYTRVQAFVP 235
Query: 243 EEFWTINCS-----HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
E FW I + E T F W R HLFD A ++YE C P V KV +
Sbjct: 236 ETFWYIFVALEREHEDGEPSTVEFRWKRNHLFDLDLAAVLYEQCTVNPQTRVLKVESKPA 295
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K+ P PL+T+EL++ SR M+ + + +AE LYQ G +SYPRTETD + + + +
Sbjct: 296 TKWKPLPLTTVELQQSGSRLLHMTPKRILDLAEKLYQKGIVSYPRTETDQYDPKFDFNSL 355
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+Q+Q WG YAQ+LLD G ++ P +G +DKAHPPIHPT + D ++
Sbjct: 356 IQKQTLDNQWGAYAQKLLD---GAFQKPRNGRKNDKAHPPIHPTAHAGN---LEGDERRV 409
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
+EL+ R FLA S A G T VEI+IA E+FST+G V+L +NYL+VY ++ W +P
Sbjct: 410 FELITRRFLASCSTNAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPN 469
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ G+ FIP + L G T P LL+EADL+ MDK GIGTDAT+ +HI K+++R Y +
Sbjct: 470 FEEGEVFIPDVIDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTE 529
Query: 538 DANTR---FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
R P+ +G LV G++ +G++ L KP+LR E M+ + G + K ++L
Sbjct: 530 KQEARIKYLVPSTLGIGLVEGFNAIGFDRSLSKPHLRRETEHRMQLICDGVRGKREILQT 589
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQA 630
+++ K F+ AR + +++ + + GE Q+A
Sbjct: 590 TIEEYKEVFVKARREFQTVIDCVENYLH--GAGEAQEA 625
>gi|225560799|gb|EEH09080.1| DNA topoisomerase III [Ajellomyces capsulatus G186AR]
Length = 630
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/635 (43%), Positives = 378/635 (59%), Gaps = 32/635 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR---GQPCHMLMTSVT 65
+L VAEKP++A+ VA LS + + + K YEF+++ GQ C ++MTSV
Sbjct: 4 KILCVAEKPAIARVVAQHLSGGSSRVVSIRGNVFVKNYEFDFTFAPPWGQ-CSVIMTSVI 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL L+FD +YR W+SC P L+ APV V ++ I + + AR + L +W DCD
Sbjct: 63 GHLTSLEFDSQYRGWNSCPPGRLFDAPVVDSVAKNNLTIAENIRTLARNSKALFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV R N + ++RARFS I QA N +D + A+AV AR E+
Sbjct: 123 REGEHIGTEVRYQARKSNPRIEIKRARFSNTERAHILQAATNPIDLDDSQANAVAARIEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ LK+ + V +DR V+SYG CQFPTLGFVV+RY+ ++ + E+F
Sbjct: 183 DLRIGAAFTRLQTLQLKS--LGGVLEDR--VISYGSCQFPTLGFVVDRYFRVKNFKPEKF 238
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
WTI SH + T F W R HL+D + VI++E C+ TA VTKV ++ K+ P PL
Sbjct: 239 WTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFERCLTSKTAKVTKVHKKPTRKWRPLPL 298
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ SRY RM S+ MK+AE LY GFISYPRTETD F G +L ++++QI
Sbjct: 299 TTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFISYPRTETDQFDKGIDLKKLIEKQIPSE 358
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG YAQRL++ G + P +G H+DKAHPPIHP F++ + S D +YE V R F
Sbjct: 359 NWGQYAQRLIN---GSFTQPRAGHHNDKAHPPIHPVIFAA-PTVLSNDERLVYEFVTRRF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQF 484
LAC S+ A G T VEI E+F T G ++L +NYLDVY ++ W IP + G+ F
Sbjct: 415 LACCSEDAKGESTEVEIKYGDEIFHTHGLLVLERNYLDVYVYDKWESSQEIPPFTLGEVF 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT + G T P L+E +L+ MD GIGTDATM DHI ++ +R Y
Sbjct: 475 EPTEAKIMDGKTVAPGYLTEPELIGLMDANGIGTDATMADHIARIKEREYVATRPRGGGR 534
Query: 537 -KDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
+A F PT +G ALV GYD++ L KP LR ME M+E+ VG KSK +V
Sbjct: 535 GNNAVQEFIPTQLGVALVEGYDNVVNGLPDSPSLSKPFLRKEMELRMREICVGTKSKTEV 594
Query: 590 LANCLQQMKACFLDARLKKVKLLEAM---GIFFER 621
+ LQ + F+ + +++ +L+A IF ER
Sbjct: 595 VNESLQMYREVFVHTQ-QRIDILKAACRKYIFEER 628
>gi|409075215|gb|EKM75598.1| hypothetical protein AGABI1DRAFT_46203 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 852
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/603 (43%), Positives = 366/603 (60%), Gaps = 22/603 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS++KS++ ILS + +S Y K YEF Y ++T V+GH
Sbjct: 1 MRVLCVAEKPSISKSISQILSGGR-YTTHNTQSPYVKNYEFEYPQTNS--SFIVTCVSGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+E DF + +RKWHSC P +L+ AP+ V K I++ L +ARR L++W DCDRE
Sbjct: 58 LLEHDFTDAHRKWHSCSPGELFDAPIESKVGPKMKPIEQNLLAQARRVATLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E++ VCR N +LV++RARFSA+I ++IH+A Q V+ + ADAV+AR +DL
Sbjct: 118 GEHIGTEIVSVCRRANRNLVVKRARFSAIIAQQIHRAAQQPVELDLAQADAVEARILLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR QT+ L+ V ++SYGPCQFPTLGF V+RY +++ E+FW
Sbjct: 178 RIGAAFTRMQTLSLQT----QVQQLAEKIVSYGPCQFPTLGFAVQRYNQVKNFIPEDFWY 233
Query: 248 INCSHKSEEGTA----TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
I SH S+ FSW RGHLFD ++YE ++ P V KV ++ K+ P
Sbjct: 234 IFLSHTSDTPMGPRETVFSWKRGHLFDEAVVAVLYEHVLEFPNVRVAKVVNKQTKKWKPL 293
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K SR +M+ + + +AE LYQ GF+SYPRTETD F + ++Q+Q
Sbjct: 294 PLTTVELQKAGSRLLKMAPKKVLDIAEKLYQQGFVSYPRTETDQFDPQFDFMSLIQKQKA 353
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+WG +AQ L G + +P G HDDKAHPPIHPT + + D ++YE + R
Sbjct: 354 DTNWGNFAQSL---EQGGFTSPRKGKHDDKAHPPIHPTAHAGN---LTGDEKRVYEYIAR 407
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
FLAC S+ A G +T VE+ GE F +G VIL NYLDVY ++ W IP Y G+
Sbjct: 408 RFLACCSKDAEGWQTTVEVVCGGEFFHATGLVILKTNYLDVYPYDKWSDHPIPEYKEGES 467
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--DANT 541
F PT + SG T P LL+EADL++ MDK GIGTDAT+ HI+ ++DR Y I+ + +T
Sbjct: 468 FRPTCCEMRSGKTSKPQLLTEADLVTVMDKNGIGTDATIAQHIQTIVDREYVIERMEGST 527
Query: 542 RF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
++ P+ +G ALV GYD +G + + KP LR E M V +K +L L+Q K
Sbjct: 528 KYLVPSTLGVALVEGYDQIGLDRSVSKPQLRRETERRMVLVGQRTITKQAMLDQALEQYK 587
Query: 599 ACF 601
F
Sbjct: 588 EMF 590
>gi|118374593|ref|XP_001020484.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89302251|gb|EAS00239.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1049
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/721 (37%), Positives = 405/721 (56%), Gaps = 59/721 (8%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+LNVAEKPSVAK ++ +L N + + S+YN +++F Y ++ + +ML TSVTGHL+
Sbjct: 4 ILNVAEKPSVAKEISRVLG-NGSQKTLDSESKYNPVFQFEYKLKQEQVNMLFTSVTGHLI 62
Query: 70 ELDFDERYRKWHSCDPADLYH--APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
FD++++ W S +P+ L + + K V DK I++ L + AR+ L+LWLDCDRE
Sbjct: 63 SQKFDDKFKNWKSFNPSVLLDQSSEILKFVESDKISIQRNLIKWARQVDTLILWLDCDRE 122
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE IA+E RA FS+L + A+ NL DP + ++AV++R EIDL
Sbjct: 123 GEAIAYE---------------RAWFSSLDRLNVTNAINNLRDPRKELSEAVESRMEIDL 167
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIG++FT FQT+ LKN + S+ D + V+SYGPCQFPTLGFVV+RY +I + E+FW
Sbjct: 168 RIGSAFTVFQTLNLKN-NFQSLKDKKE-VISYGPCQFPTLGFVVDRYNQILKFQDEKFWY 225
Query: 248 INCSHKSEEGTATFS----WMRGHLFDYTSAVIIYEMCVQ------EPTATVTKVRQQEK 297
I S++ ++ T + W RG LFD A + Y C Q +P V K +++
Sbjct: 226 IQPSYQWKDNNKTLTVDLKWSRGRLFDQAIASVFYLNCTQNEDGEYDPKGIVVKKNERDT 285
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET----DSFSSGTN 353
K PYPL+T++L K+ R RM+SE M AE LYQ+G+ISYPRTET D+F +G
Sbjct: 286 TKIRPYPLTTVDLTKQGCRILRMASEKIMHTAEQLYQSGYISYPRTETNKYPDTFQNGQ- 344
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQD 413
L +V+ Q +WG Y+ L+D G ++ P +G DDKAHPPIHP K ++ +++ +
Sbjct: 345 LMDLVRNQKQSDEWGFYSSNLIDQ--GNFQRPRAGKQDDKAHPPIHPIKLAN-KNQLKPE 401
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL 473
+K+YE + RHFLA + AVGA+T VE+ E F+ G V+ KNYL+++ +E W
Sbjct: 402 EWKVYEFITRHFLASCGKDAVGAKTEVEVKFNDESFNIDGLVVKEKNYLEIWTYEKWNDS 461
Query: 474 VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRF 533
++P GQ IP + L G T PP L+E++L+ M+K GIGTDATMHDHI + R
Sbjct: 462 IVPPLQPGQVIIPQKILLQEGKTTPPKPLTESELIDMMNKNGIGTDATMHDHILTIQKRG 521
Query: 534 YAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
YA+K+ + F PT +G AL YD +G L KP+LR+ ME M +V+ G ++ ++
Sbjct: 522 YAVKNQHLMFTPTPLGLALCHAYDQLGLTLSKPDLRAKMERLMSDVAEGKTTREAIITQI 581
Query: 594 LQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVV--RQCGICQE-------- 643
+++MK+ + K ++++G + + +CG CQ+
Sbjct: 582 MEEMKSIYKTVEQNKQLFIKSVGEQLKEQENSASTLNNSNIQPGSECGKCQKIMELQTND 641
Query: 644 ---------SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
N ++GNL P C V ++ ++ N C SC P
Sbjct: 642 YQRQLVCNPCNKSYSIPKNGNLNFRNERCPLCNFQVL--EVTTDKGISYNICPSCYNNPP 699
Query: 695 Y 695
Y
Sbjct: 700 Y 700
>gi|308483746|ref|XP_003104074.1| CRE-TOP-3 protein [Caenorhabditis remanei]
gi|308258382|gb|EFP02335.1| CRE-TOP-3 protein [Caenorhabditis remanei]
Length = 780
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 265/596 (44%), Positives = 362/596 (60%), Gaps = 10/596 (1%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK VAK VA ILS R +EGRS +NKIY N + GQ + +TSV+GH+M
Sbjct: 5 LFVAEKNDVAKGVASILSNGTSNR-KEGRSIFNKIYTLNTELFGQRTAVSVTSVSGHMMN 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F E W + +L+ APVR V D K I++TL EEA+R LV+W DCDREGE
Sbjct: 64 FQFHENMSNWQTTSMVELFEAPVRHVVMPDMKLIEQTLREEAQRHDLLVVWTDCDREGEA 123
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E+++VCR N + + RARFS + I +A QNL+ ++ AVD R E+DLRIG
Sbjct: 124 IGAEIVKVCRESNRRIDIFRARFSEITKTAITRAAQNLIRLDERTVAAVDCRSELDLRIG 183
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRN-LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
++FTR QT+ L+N D + + N V+SYG CQFPTLGFV +RY I+ SE FW ++
Sbjct: 184 SAFTRLQTLHLRNRFRDLLGQNENSKVISYGSCQFPTLGFVTDRYKLIENFISEPFWKLS 243
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H E F W R LFD I+++ C + A V KV ++ K K+ P L T+E
Sbjct: 244 VEHSREGHKVEFLWDRNRLFDREVVDILHDECKEAKEAHVEKVTKKPKSKWRPQGLDTVE 303
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK RMS++ TM+VAE LY GFISYPRTET+ F +G NL +V++Q WG
Sbjct: 304 LEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETNKFPAGLNLTPLVEQQTHSNIWGD 363
Query: 370 YAQRL-LDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+A + ++ + +P S AHPPIHP F+ +S+ D +K+YELVVRHFLAC
Sbjct: 364 FATEVFINFLINYYPSPFS------AHPPIHPLTFAD-KSQLHGDDWKVYELVVRHFLAC 416
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
VSQ A G ET+V ++I E F +SG I YL VY +E WG ++PTY ++F
Sbjct: 417 VSQDAQGEETMVNLSIGSEKFHSSGLRIRDMGYLKVYIYEKWGNRLLPTYTQDERFSDYQ 476
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
L + G T+PP LL+EADL++ MDK GIGTDAT +HI+K+ R Y + + P+ +
Sbjct: 477 LKIGDGKTQPPDLLTEADLIALMDKFGIGTDATHAEHIEKIKSREYIGVKPDGKLIPSFL 536
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
G ALV GYDDMG+ + KP+LR+ +E + E+ G + K DVL + + K F+++
Sbjct: 537 GLALVDGYDDMGFAMSKPDLRANLEIQLNEICNGRRQKQDVLNEQIGKYKTIFVES 592
>gi|395333070|gb|EJF65448.1| prokaryotic type I DNA topoisomerase, partial [Dichomitus squalens
LYAD-421 SS1]
Length = 1032
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 262/619 (42%), Positives = 378/619 (61%), Gaps = 23/619 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+AKS+ ILS + R R++Y K Y+F+Y H +TSVTGH
Sbjct: 1 MRVLCVAEKPSIAKSITQILSGGR-FNTRNSRNKYIKNYDFDYPQTN--AHFTVTSVTGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M+ DF+ Y KW SCDP L+ AP+ V +D K I L+ EA R Q L++W DCDRE
Sbjct: 58 VMDYDFNVMYSKWTSCDPFALFDAPIECKVKDDAKTIADNLKTEAARAQMLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI E+ +C+ N +L +RRARFSA+I ++IH A Q+ V+ + A AV+AR +DL
Sbjct: 118 GENIGAEIARICQRSNRNLTVRRARFSAIIAQQIHNAAQHPVNLDMAQASAVEARILLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIG++FTR QT+ L+ + +++ + ++SYGPCQFPTLGFVV RY +++ + E FW
Sbjct: 178 RIGSAFTRLQTLNLQRRY-EALKKE---LISYGPCQFPTLGFVVARYNKVKNFKPEPFWY 233
Query: 248 INCS----HKSEEGTAT-FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I S EE T F+W RGHLF +A +YE ++ P A VTKV +E K+ P
Sbjct: 234 IFLSLTRPSSDEEPVDTEFTWRRGHLFSLPAAWGLYEAALEHPVARVTKVTSKETKKWKP 293
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
YPL+T++L+K SR ++S + + +AE LYQ GF+SYPRTETD + + ++Q+Q
Sbjct: 294 YPLTTVDLQKAGSRLLKLSPKKILDIAEHLYQQGFLSYPRTETDVYDPQFDFMSLIQKQT 353
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
P WG +A L + G + P G +DD AHPPIHPT + D ++YE +
Sbjct: 354 ADPAWGGFASGLRE---GGFTPPRRGKNDDHAHPPIHPTAHAGN---LVGDEKRVYEYIA 407
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R FLA S+ A+G +T V++ E F +G I +NYL+V+ ++ W +P + G+
Sbjct: 408 RRFLASCSKDALGWQTTVDVKYGEEEFYATGLTIRERNYLEVFPYDKWADKELPQFQEGE 467
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA---IKDA 539
F+PT LD G T P LL+EADL+S MD+ GIGTDAT+ HI+ ++DR Y ++ A
Sbjct: 468 AFVPTECRLDEGQTSKPKLLTEADLVSLMDEHGIGTDATIAQHIQTIVDRGYVHEKMQGA 527
Query: 540 NTRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
P+ +G LV GYD +G+E L K LR E M ++ G KSK +VL +++
Sbjct: 528 TKYLIPSTLGIGLVEGYDAIGFEQSLSKSELRRETERQMVDICQGLKSKNEVLEESIERY 587
Query: 598 KACFLDARLKKVKLLEAMG 616
K F+ +++ KLL+A+G
Sbjct: 588 KEMFMRTKIEFQKLLQAVG 606
>gi|295664843|ref|XP_002792973.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278494|gb|EEH34060.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 632
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 264/625 (42%), Positives = 376/625 (60%), Gaps = 27/625 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+L VAEKP++AK+VA LS + L IR N ++F ++ C + +TSV G
Sbjct: 4 KILCVAEKPAIAKAVAQHLSGGALRTLSIRGNVFVKNYEFDFTFAPPWGRCSVTVTSVIG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL LDFD +YR W+SC P L+ APV+ VP+DK+ I + ++ AR + L +W DCDR
Sbjct: 64 HLTGLDFDSQYRGWNSCPPGRLFDAPVQVSVPKDKQKIAENIQTLARHSKALFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV R N + ++RARFS + A N ++ +++ A+AV AR E+D
Sbjct: 124 EGEHIGTEVRYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQANAVAARIELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR QT+ LK+ + V +DR ++SYG CQFPTLGFVV+RY+ ++ + E FW
Sbjct: 184 LRIGAAFTRLQTLQLKS--LGGVLEDR--IISYGSCQFPTLGFVVDRYFRVKNFKPETFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I SH + T F W R H+FD +AV+++E C+ TA VTKV ++ K+ P PL+
Sbjct: 240 VIKVSHLRDGKTVNFLWRRVHVFDRAAAVVLFERCLSAKTAKVTKVIKKPTRKWRPLPLT 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L+ S+Y RM S+ MK+AE LY GFISYPRTETD F G +L +V++QI +
Sbjct: 300 TVDLQMMGSKYLRMDSQKVMKIAEGLYTKGFISYPRTETDQFDKGIDLKKLVEKQIPSEN 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG AQRL+D G + P +G H+DKAHPPIHP +++ + S+D ++YE V R FL
Sbjct: 360 WGQNAQRLMD---GAFTQPRAGRHNDKAHPPIHPVIYAAPAALSSEDERRVYEFVSRRFL 416
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFI 485
AC S+ A G T +EI E+F G ++L +NYLDVY ++ W +P + G+ F
Sbjct: 417 ACCSEDAKGESTEIEIKYGDEIFHAHGLLVLERNYLDVYVYDKWESSQEMPIFTVGEVFE 476
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--------K 537
PT + G T P L+E +L+ MD GIGTDATM +HI K+ +R Y +
Sbjct: 477 PTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRSGGGR 536
Query: 538 DANT--RFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
NT F PT +G ALV GYDD+ L KP LR ME M+E+ G KSK +V
Sbjct: 537 GNNTVQEFIPTQLGVALVKGYDDVVNGLPDSPSLSKPFLRKEMELRMREICAGTKSKTEV 596
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
+ L + F+ + ++++ L+A
Sbjct: 597 VNESLHMYREVFIHTQ-QRIEALKA 620
>gi|392578148|gb|EIW71276.1| hypothetical protein TREMEDRAFT_73248 [Tremella mesenterica DSM
1558]
Length = 1002
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 267/641 (41%), Positives = 381/641 (59%), Gaps = 33/641 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-------CHML 60
+ VL VAEKPS+AKS+ ILS G R S + I +++ R P
Sbjct: 1 MRVLCVAEKPSIAKSITQILS---GGRWDTRDSGHPYIRNLDFAYRLPPPLGGVGDADFT 57
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
+T+V GHL DFDE +RKW SCDP L+ AP+ +V K +++ L EARR L++
Sbjct: 58 VTAVLGHLTSSDFDENHRKWGSCDPFALFDAPILTYVDTKFKPVERNLINEARRADLLII 117
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
W DCDREGE+I EV+ CR N + ++RARFSA+I +IHQA ++ D + ADAV+
Sbjct: 118 WTDCDREGEHIGSEVVAACRKGNSRIRVKRARFSAIIPAQIHQACRSANDLDMKQADAVE 177
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
AR +DLRIGA+F+R T+ L+N V + V+SYGPCQFPTLGFVV++Y +Q+
Sbjct: 178 ARINLDLRIGAAFSRLVTLGLQN----RVPELGQQVISYGPCQFPTLGFVVDQYNRVQSF 233
Query: 241 ESEEFWTINCS-HKSEEG-----TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
E FW I + + EEG T F W R HLFD +A ++YE CV+EP A V +V
Sbjct: 234 VPEPFWYIYVAIQRQEEGEEEPSTVEFKWRRNHLFDMEAAFVLYERCVEEPMAKVIRVET 293
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
+ K+ P PL+T+EL++ SR +M+ + + +AE LYQ GF+SYPRTETD + S +
Sbjct: 294 KPTTKWKPLPLTTVELQQSGSRLLQMTPKSVLDIAEKLYQKGFLSYPRTETDQYDSAFDF 353
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
++Q+Q WG +AQ+LLD G ++ P +G +DKAHPPIHPT +S S +
Sbjct: 354 TSLIQKQTHDQVWGGFAQKLLD---GEFQRPRNGKKNDKAHPPIHPTAHASN---LSPEE 407
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
K++ELV R FLA S A G T VEI IA E FS SG VI +NYL+VY ++ W
Sbjct: 408 RKVFELVTRRFLASCSSNAEGKTTTVEIVIADEYFSASGLVITRRNYLEVYHYDKWSSSS 467
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
+P + + F+P+ L G T P LL+EADL+ MD+ GIGTDAT+ +HI K+++R Y
Sbjct: 468 LPDFQENETFMPSICELKEGSTSRPNLLTEADLVGLMDRNGIGTDATIAEHISKVIERGY 527
Query: 535 AIKDANTR---FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADV 589
+ R P+ +G LV G++ +G++ L KP LR+ E M+ + ++K DV
Sbjct: 528 VKERQEQRIKYLVPSTLGVGLVEGFNQIGFDKSLSKPQLRAETEHSMQLICNAQRTKQDV 587
Query: 590 LANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQA 630
L + Q K F+ AR + +++++ + GE Q+A
Sbjct: 588 LQYTIDQYKEVFIKARREFQTVIDSVLSYLH--GAGEAQEA 626
>gi|403411970|emb|CCL98670.1| predicted protein [Fibroporia radiculosa]
Length = 929
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/618 (41%), Positives = 375/618 (60%), Gaps = 22/618 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+AKS+ ILS Q R Y K Y+FNY +T+VTGH
Sbjct: 1 MRVLCVAEKPSIAKSITQILSGGQ-FTTRSTGCPYIKDYDFNYPQTN--SLFTITAVTGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L++ DF Y KW SCDP L+ AP+ V +D K I + L EA+R Q L++W DCDRE
Sbjct: 58 LLDYDFSLAYSKWSSCDPFQLFEAPIETSVKKDSKAIAQNLTNEAKRAQTLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI E+ ++CR ++ ++RARFSA+I ++IH A Q+ V+ N A+AV+AR +DL
Sbjct: 118 GENIGSEIAQICRRAQRNITIKRARFSAIIPQQIHNAAQHPVNLNMAQANAVEARIHLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+G++FTR QT+ L+ +++ DD ++SYGPCQFPTLGFVV RY ++++ E FW
Sbjct: 178 RVGSAFTRLQTLNLQR-RFENLKDD---IISYGPCQFPTLGFVVSRYNQVKSFVPETFWY 233
Query: 248 INCSHKSEEGTA----TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
I S ++ T F+W RGHLF++ A+I+YE + P A VT+V ++ K+ P
Sbjct: 234 IFLSLTTQSPTGDEETVFNWKRGHLFEFDIAMILYEDVLAAPVARVTRVITKDTKKWKPL 293
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K+ SR R+S + + +AE LYQ G +SYPRTETD + + +V +Q
Sbjct: 294 PLTTVELQKKGSRLLRISPKQILDIAERLYQQGILSYPRTETDQYDPQFDFMTLVGKQTV 353
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
P WG +A RL + G + P G +DKAHPPIHPT ++ + D ++YE + R
Sbjct: 354 DPVWGTFASRLQN---GQFGRPRGGQKNDKAHPPIHPTAYAGN---LAGDDKRVYEYITR 407
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
FLAC S+ A+G ET V + E F+ G + +NYL+VY ++ W +P + GQ
Sbjct: 408 RFLACCSKDALGWETTVTVIYGEEEFTAKGLTVRERNYLEVYPYDKWSDKELPHFEEGQA 467
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--DANT 541
F+PT L G T P LL+EADL++ MDK GIGTDAT+ HI+ ++DR Y I+ T
Sbjct: 468 FVPTVCELREGQTTKPNLLTEADLVTMMDKNGIGTDATIAQHIQTIVDRNYVIERMHGTT 527
Query: 542 RF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
++ P+ +G LV GYD +G+E + +P LR E + + G SK +VL ++Q K
Sbjct: 528 KYLVPSTLGIGLVEGYDAIGFERSMSRPQLRRETERRIVGICEGTMSKMEVLNESIEQYK 587
Query: 599 ACFLDARLKKVKLLEAMG 616
++ + + +L+ +G
Sbjct: 588 EMYMRTKHQFNRLVTCVG 605
>gi|154278056|ref|XP_001539853.1| DNA topoisomerase III [Ajellomyces capsulatus NAm1]
gi|150413438|gb|EDN08821.1| DNA topoisomerase III [Ajellomyces capsulatus NAm1]
Length = 632
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 268/625 (42%), Positives = 371/625 (59%), Gaps = 27/625 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR---GQPCHMLMTSVT 65
+L VAEKP++A+ VA LS + + + K YEF+++ GQ C ++MTSV
Sbjct: 4 KILCVAEKPAIARVVAQHLSGGSSRAVSIRGNVFVKNYEFDFTFAPPWGQ-CSVIMTSVL 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL LDFD +YR W+SC P L+ APV V +D I + + AR + L +W DCD
Sbjct: 63 GHLTSLDFDSQYRGWNSCPPGLLFDAPVVDSVAKDNLTIAENIRTLARNSKALFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV R N + ++RARFS I QA N ++ + A+AV AR E+
Sbjct: 123 REGEHIGTEVRYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQANAVAARIEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ LK+ + V +DR + G CQFPTLGFVV+RY+ ++ + E+F
Sbjct: 183 DLRIGAAFTRLQTLQLKS--LGGVLEDRVISYVPGSCQFPTLGFVVDRYFRVKNFKPEKF 240
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
WTI SH + T F W R HL+D + VI++E C+ TA VTK+ ++ K+ P PL
Sbjct: 241 WTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFERCLTSKTAKVTKMHKKPTRKWRPLPL 300
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ SRY RM S+ MK+AE LY GFISYPRTETD F G +L ++++QI
Sbjct: 301 TTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFISYPRTETDQFDKGIDLKKLIEKQIPSE 360
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG YAQRL++ G + P +G H+DKAHPPIHP F++ + S D +YE V R F
Sbjct: 361 NWGQYAQRLIN---GSFTQPRAGHHNDKAHPPIHPVIFAA-PTVLSNDERLVYEFVTRRF 416
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQF 484
LAC S+ A G T VEI E+F T G ++L +NYLDVY ++ W IP + G+ F
Sbjct: 417 LACCSEDAKGESTEVEIKYGDEIFHTHGLLVLERNYLDVYVYDKWESSQEIPPFTLGEVF 476
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT + G T P L+E +L+ MD GIGTDATM DHI K+ +R Y
Sbjct: 477 EPTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMADHIAKIKEREYVATRPRGGGR 536
Query: 537 -KDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
+A F PT +G ALV GYD++ L KP LR ME M+E+ VG KSK +V
Sbjct: 537 GNNAVQEFIPTQLGVALVEGYDNVVNGLPDSPSLSKPFLRKEMELRMREICVGTKSKTEV 596
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
+ LQ + F+ + +++ +L+A
Sbjct: 597 VNESLQMYREVFVHTQ-QRIDMLKA 620
>gi|343429570|emb|CBQ73143.1| related to DNA topoisomerase III alpha [Sporisorium reilianum SRZ2]
Length = 998
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 373/616 (60%), Gaps = 32/616 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP--CHMLMTSVT 65
+ +L VAEKPS+AKS++ IL++ R G+ ++ + Y+F Y + G M MTSV
Sbjct: 1 MRILCVAEKPSIAKSISAILARGHPSN-RPGKDKFCRNYDFQYKMPGVQGMVDMTMTSVR 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL DF +++ W SC PADL+ AP+ + +D K I L EAR +++W DCD
Sbjct: 60 GHLTNADFGPQHKGWFSCSPADLFQAPIITDLSDDAKAIGTNLRMEARNADAVMIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E++ R V ++ + RARFSA+ID +IH A QN VD + ADAV++R ++
Sbjct: 120 REGEHIGSEIVTEVRKVRRNIRVMRARFSAIIDSQIHAACQNTVDLDWRAADAVESRIQL 179
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ L+N I ++ + R V+SYGPCQFPTLGFVV+RY ++ E F
Sbjct: 180 DLRIGAAFTRMQTLALQN-RIPALGEQRQ-VISYGPCQFPTLGFVVDRYNKVVHFVPEPF 237
Query: 246 WTINCSHKSEE---------------GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVT 290
W + HK+ F+W R HLFD I ++C P ATV
Sbjct: 238 WLLQV-HKTRSMSGGDPSPDDPPDDIRKVVFNWDRVHLFDKRVVQIFRDLCRANPDATVD 296
Query: 291 KVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSS 350
V ++ K+ PYPL+T+EL+K SR R++ + + VAE LYQ GF+SYPRTETD +
Sbjct: 297 NVTDKQTKKWKPYPLTTVELQKSGSRLLRLTPKRILDVAESLYQKGFLSYPRTETDQYDK 356
Query: 351 GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW 410
+ ++ +Q WG AQRLLD G + P +G ++DKAHPPIHPT ++G
Sbjct: 357 DFDFTSLIAKQTADGAWGNIAQRLLD---GDFERPRNGKNNDKAHPPIHPTSHANG---L 410
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW 470
+ D ++Y+ V R FLA + A+G +T V I+IAGE F SG VIL +NYL+V+ ++ W
Sbjct: 411 TGDDKRVYDYVTRRFLASCWKDAIGTQTTVSISIAGERFHASGLVILQRNYLEVFTYDKW 470
Query: 471 GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLL 530
G ++P +V G+ F PT + G T PP LL+EADL++ MDK GIGTDAT+ +HI K++
Sbjct: 471 EGNLLPPFVRGETFRPTRFEMKEGSTSPPKLLTEADLVNLMDKNGIGTDATIAEHIAKVI 530
Query: 531 DRFYA--IKDANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKS 585
+R Y +K+ T + P+ +G LV GY+ + E L KP LR E M + G +S
Sbjct: 531 ERRYVMQVKEGKTTYLVPSTLGIGLVEGYNQLNLEKSLSKPLLRRETEFRMSLICAGQRS 590
Query: 586 KADVLANCLQQMKACF 601
KA+ +A L++ + F
Sbjct: 591 KAETIAESLEEYREVF 606
>gi|145238250|ref|XP_001391772.1| DNA topoisomerase 3 [Aspergillus niger CBS 513.88]
gi|134076254|emb|CAK39540.1| unnamed protein product [Aspergillus niger]
Length = 629
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/621 (41%), Positives = 367/621 (59%), Gaps = 24/621 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
VL VAEKP++AK+VA LS Q + IR + N +++FN+ C + MTSV GH
Sbjct: 6 VLCVAEKPAIAKAVAQHLSGGSFQTIAIRGNQYVKNYVFDFNFGGSWGTCSVTMTSVIGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L LDF+ +YR W SC P+ L+ APV + V +DK I K ++E+ARRC+ L +W DCDRE
Sbjct: 66 LTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ + + N +V++RARFS + A ++L++ + A+AV AR E+DL
Sbjct: 126 GEHIGTEIRKQAKEGNSRIVVKRARFSNTEKAHVLHAARSLIELDDLQANAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR QT+ LK ++ ++SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 186 RIGAAFTRLQTLQLKPLSAAL----QDTIISYGSCQFPTLGFVVDRYLRVKNFKPETFWG 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H ++ F W R HLFD + ++ E C+ A VTKV Q+ K+ P PL+T
Sbjct: 242 IKVMHTRDDIKVNFLWKRVHLFDRVAVTVMLERCLMAKKAKVTKVTQKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ SRY RM S+ MKVAE LY GFISYPRTETD F G +L +V+ Q+ +W
Sbjct: 302 VDLQMMGSRYLRMDSQTIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLVETQLPDGNW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA+ LLD G ++ P SG H+D+AHPPIHP + + + + D K+YE VVR FLA
Sbjct: 362 GQYARHLLD---GAFKTPRSGRHNDQAHPPIHPICWVAPTA-LTADEKKVYEFVVRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C S+ A G T +EI E F G ++L +NYLDVY ++ W +P Y G+ F P
Sbjct: 418 CCSEDAKGQSTEIEIQYGDEFFHAKGLLVLERNYLDVYVYDKWESSQQLPNYQMGEMFEP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------KDA 539
T + G T PP L+E +L+ MD GIGTDATM +HI K+ +R Y ++A
Sbjct: 478 TEAKIFDGKTSPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKERQYVAVHSRGSGRNA 537
Query: 540 NTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
PT +G ALV GYD++ L KP LR ME M+E+ G +++ V+
Sbjct: 538 VKELIPTRLGIALVEGYDNVFAGIPDSPSLSKPFLRKEMELRMREICAGRRTRQQVVQES 597
Query: 594 LQQMKACFLDARLKKVKLLEA 614
L + F+ + + +L +A
Sbjct: 598 LDMYREVFVHTQRRINRLKDA 618
>gi|358368744|dbj|GAA85360.1| DNA topoisomerase III [Aspergillus kawachii IFO 4308]
Length = 629
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/621 (41%), Positives = 368/621 (59%), Gaps = 24/621 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
VL VAEKP++AK+VA LS Q + IR + N +++FN+ C + MTSV GH
Sbjct: 6 VLCVAEKPAIAKAVAQHLSGGSFQTIAIRGNQYVKNYVFDFNFGGPWGTCSVTMTSVIGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L LDF+ +YR W SC P+ L+ APV + V +DK I K ++E+ARRC+ L +W DCDRE
Sbjct: 66 LTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ + + N +V++RARFS + A ++L++ + A+AV AR E+DL
Sbjct: 126 GEHIGTEIRKQAKEGNARIVIKRARFSNTEKAHVLHAARSLIELDDLQANAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR QT+ LK ++ ++SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 186 RIGAAFTRLQTLQLKPLSAAL----QDTIISYGSCQFPTLGFVVDRYLRVKNFKPETFWG 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H ++ F W R HLFD + ++ E C+ A VTKV Q+ K+ P PL+T
Sbjct: 242 IKVMHTRDDIKVNFLWKRVHLFDRAAVTVMLERCLMAKKAKVTKVTQKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ SRY RM S+ MKVAE LY GFISYPRTETD F G +L +V++Q+ +W
Sbjct: 302 VDLQMMGSRYLRMDSQTIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQLPDGNW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA+ LLD G ++ P SG H+D+AHPPIHP + + + + D K+YE VVR FLA
Sbjct: 362 GQYARHLLD---GAFKTPRSGRHNDQAHPPIHPICWVAPTA-LTADEKKVYEFVVRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C S+ A G T VEI E F G ++L +NYLDVY ++ W +P + G+ F P
Sbjct: 418 CCSEDAKGQSTEVEIQYGDEFFHAKGLLVLERNYLDVYVYDKWESSQQLPNFQMGEMFEP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------KDA 539
T + G T PP L+E +L+ MD GIGTDATM +HI K+ +R Y ++A
Sbjct: 478 TEAKIFDGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKERQYVAVHSRGSGRNA 537
Query: 540 NTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
PT +G ALV GYD++ L KP LR ME M+E+ G +++ V+
Sbjct: 538 VKELIPTRLGIALVEGYDNVFAGIPDSPSLSKPFLRKEMELRMREICAGRRTRQQVVQES 597
Query: 594 LQQMKACFLDARLKKVKLLEA 614
L + F+ + + +L +A
Sbjct: 598 LDMYREVFVHTQRRINRLKDA 618
>gi|389741773|gb|EIM82961.1| prokaryotic type I DNA topoisomerase [Stereum hirsutum FP-91666
SS1]
Length = 637
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 257/622 (41%), Positives = 386/622 (62%), Gaps = 23/622 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS++KS+ ILS Q R + Y K Y+F Y+ +T V GH
Sbjct: 1 MRVLCVAEKPSISKSITQILSGGQ-FTTRNTATNYVKNYDFTYNYTHST--FTVTCVAGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LME DF + +RKW SCDP L+ AP+ +DK I + + EARR L++W DCDRE
Sbjct: 58 LMEYDFHDTHRKWQSCDPIALFDAPIESKTAKDKTAIAQNISNEARRADQLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E++ + N +++++RARFSA+I ++IH A Q+ ++ + A AV AR +DL
Sbjct: 118 GENIGWEIMVTAQKTNRNIIVKRARFSAIIAQQIHNAAQHPIELDLLQAQAVTARINLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR QTM L++ ++ + + V+SYGPCQFPTLGFVV RY ++Q+ E FW
Sbjct: 178 RIGAAFTRMQTMALRD-RLEKLKEAG--VISYGPCQFPTLGFVVSRYNQVQSFVPEAFWY 234
Query: 248 INCSHKSEEGTAT------FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
I S + G++ F+W RGHLF++ A++IYE+ + P A VTKV ++ K+
Sbjct: 235 IYLSIEPNAGSSKINEEVQFTWRRGHLFEFEVALVIYEVVLASPRARVTKVTKKNTKKWK 294
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T+EL+K SR +++ + + +AE LYQ GF+SYPRTETD + + ++++Q
Sbjct: 295 PLPLTTVELQKAGSRLLKLAPKKILDIAEKLYQQGFLSYPRTETDQYDPQFDFMSLIEKQ 354
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
P+WG +A L + P G ++D AHPPIHPT ++ D ++YE +
Sbjct: 355 NVDPEWGQFAHMLQTQDG--FNAPRKGKNNDHAHPPIHPTAHAAN---LGGDDKRVYEFI 409
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR FLAC S+ A+G +T V++ GE F +G +IL +N+L+VY +E W G +P + G
Sbjct: 410 VRRFLACCSKDALGFQTTVDVLCGGEEFYATGLIILERNFLNVYPYEKWSGKELPDFEEG 469
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--KDA 539
+F+P+ L GVT PP LL+EADL+ MDK GIGTDAT+ HI+ +++R Y I D
Sbjct: 470 DEFMPSVCELREGVTSPPNLLTEADLVGLMDKNGIGTDATIAQHIETIIERGYVIPRPDG 529
Query: 540 NTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
++ P+ +G LV GY+++G+E L KP LR E ++ +V G KSK D+L+ ++Q
Sbjct: 530 GVKYLVPSTLGIGLVDGYNEIGFEKSLSKPQLRRDTERNLVQVCQGQKSKTDMLSESIEQ 589
Query: 597 MKACFLDARLKKVKLLEAMGIF 618
K ++ A+ K++ A+ +F
Sbjct: 590 YKEMYILAKRDFPKIM-AVSVF 610
>gi|350635779|gb|EHA24140.1| hypothetical protein ASPNIDRAFT_48367 [Aspergillus niger ATCC 1015]
Length = 629
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 259/621 (41%), Positives = 367/621 (59%), Gaps = 24/621 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
VL VAEKP++AK+VA LS Q + IR + N +++FN+ C + MTSV GH
Sbjct: 6 VLCVAEKPAIAKAVAQHLSGGSFQTIAIRGNQYVKNYVFDFNFGGSWGTCSVTMTSVIGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L LDF+ +YR W SC P+ L+ APV + V +DK I K ++E+ARRC+ L +W DCDRE
Sbjct: 66 LTGLDFERQYRTWLSCPPSALFEAPVHESVADDKVAIAKNIQEQARRCKALFIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ + + N +V++RARFS + A ++L++ + A+AV AR E+DL
Sbjct: 126 GEHIGTEIRKQAKEGNSRIVVKRARFSNTEKAHVLHAARSLIELDDLQANAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR QT+ LK ++ ++SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 186 RIGAAFTRLQTLQLKPLSAAL----QDTIISYGSCQFPTLGFVVDRYLRVKNFKPETFWG 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H ++ F W R HLFD + ++ E C+ A VTKV Q+ K+ P PL+T
Sbjct: 242 IKVMHTRDDIKVNFLWKRVHLFDRAAVTVMLERCLMAKKAKVTKVTQKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ SRY RM S+ MKVAE LY GFISYPRTETD F G +L +V++Q+ +W
Sbjct: 302 VDLQMMGSRYLRMDSQTIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQLPDGNW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA+ LLD G ++ P SG H+D+AHPPIHP + + + + D K+YE VVR FLA
Sbjct: 362 GQYARHLLD---GAFKTPRSGRHNDQAHPPIHPICWVAPTA-LTADEKKVYEFVVRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C S+ A G T +EI E G ++L +NYLDVY ++ W +P Y G+ F P
Sbjct: 418 CCSEDAKGQSTEIEIQYGDEFLHAKGLLVLERNYLDVYVYDKWESSQQLPNYQMGEMFEP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------KDA 539
T + G T PP L+E +L+ MD GIGTDATM +HI K+ +R Y ++A
Sbjct: 478 TEAKIFDGKTSPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKERQYVAVHSRGSGRNA 537
Query: 540 NTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
PT +G ALV GYD++ L KP LR ME M+E+ G +++ V+
Sbjct: 538 VKELIPTRLGIALVEGYDNVFAGIPDSPSLSKPFLRKEMELRMREICAGRRTRQQVVQES 597
Query: 594 LQQMKACFLDARLKKVKLLEA 614
L + F+ + + +L +A
Sbjct: 598 LDMYREVFVHTQRRINRLKDA 618
>gi|328860051|gb|EGG09158.1| hypothetical protein MELLADRAFT_34533 [Melampsora larici-populina
98AG31]
Length = 749
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/604 (41%), Positives = 374/604 (61%), Gaps = 18/604 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI--RGQPCHMLMTSVTGH 67
VL VAEKPS+A+++ ILS NQ + R+ ++Y K ++F Y + Q +TSV GH
Sbjct: 2 VLCVAEKPSIARAITEILSSNQ-FQTRQSPNKYVKNFDFTYRLPPSTQQISFTVTSVLGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L + DFD ++KW +CDP L+ AP+ + V + K I++ L+ EAR L++W DCDRE
Sbjct: 61 LTQSDFDAHHKKWSNCDPFALFDAPIERFVTPEHKGIERNLQAEARGSDRLMIWTDCDRE 120
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ VC N +L + RARFSA+I +IH A + + + A+AV+ R E+DL
Sbjct: 121 GEHIGSEIKSVCLKANRNLTVSRARFSAIIPAQIHNACRTAGELDMKQANAVETRMELDL 180
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+ TR QT+ L+ T V+SYGPCQFPTLGFVV++Y ++ A E FW
Sbjct: 181 RIGAALTRQQTLGLQPRFPQIET-----VISYGPCQFPTLGFVVDQYDKVAAFVPETFWY 235
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I+ + + E + F W R LFD+ +A +YEMC EP AT+ V + K+ P PL+T
Sbjct: 236 IHVTLERENVSVEFKWKRNRLFDHHTAFALYEMCADEPEATIQNVAVKPATKWKPLPLTT 295
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL+K SR ++ + + +AE LY G +SYPRTETD F + ++++QI W
Sbjct: 296 VELQKTGSRLLHLTPKTILDIAEKLYIRGLVSYPRTETDQFDPAFDHQALIEKQINDASW 355
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G +A RL + G ++ P +G +DKAHPPIHPT ++ + D ++YEL+ R +LA
Sbjct: 356 GGFASRLKNE--GAFQLPRNGKKNDKAHPPIHPTAHAND---LASDEKRVYELITRRYLA 410
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C S+ A+G T +++ IA E F+ +G VIL +NYL+VY ++ W G +P + G++F+P+
Sbjct: 411 CCSKNAIGKTTTIDVLIAEEEFTATGLVILERNYLEVYIYDKWSGNTLPDFQVGEKFLPS 470
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--DANTRF-A 544
L+ G T P LL+EADL+ MDK GIGTDAT+ +HI +++DR Y K + N ++
Sbjct: 471 VCELNEGTTTRPNLLTEADLVGLMDKNGIGTDATIAEHIARIIDRSYVFKSREGNVQYLL 530
Query: 545 PTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
P+ +G LV GY+ +G + L KP LR E M ++ G+KSK +VL +++ + F+
Sbjct: 531 PSTLGIGLVEGYNAIGLDKSLSKPQLRRETEHRMSQICEGSKSKHEVLHQTIEEYREVFM 590
Query: 603 DARL 606
++L
Sbjct: 591 RSKL 594
>gi|225684061|gb|EEH22345.1| DNA topoisomerase III [Paracoccidioides brasiliensis Pb03]
Length = 710
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 261/625 (41%), Positives = 374/625 (59%), Gaps = 32/625 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+L VAEKP++AK+VA LS + L IR N ++F ++ C + MTSV G
Sbjct: 4 KILCVAEKPAIAKAVAQHLSGGALRTLSIRGNVFVKNYEFDFTFAPPWGRCSVTMTSVIG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL LDFD +YR W+SC P L+ APV +DK+ I + ++ AR + + +W DCDR
Sbjct: 64 HLTGLDFDSQYRGWNSCPPGRLFDAPV-----QDKQKIAENIQTLARHSKAIFIWTDCDR 118
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV R N + ++RARFS + A N ++ +++ A+AV AR E+D
Sbjct: 119 EGEHIGTEVRYQARKGNPQIEVKRARFSNTERAHVLHAATNPIELDEFQANAVAARIELD 178
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR QT+ LK+ + V +DR ++SYG CQFPTLGFVV+RY+ ++ + E FW
Sbjct: 179 LRIGAAFTRLQTLQLKS--LGGVLEDR--IISYGSCQFPTLGFVVDRYFRVKNFKPEPFW 234
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I SH + T F W R H+FD +AV+++E C+ TA VTKV ++ K+ P PL+
Sbjct: 235 AIKVSHLRDGKTVNFLWRRVHVFDRAAAVVLFERCLSAKTAKVTKVNKKPTRKWRPLPLT 294
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L+ S+Y RM S+ MK+AE LY GFISYPRTETD F G +L +V++QI +
Sbjct: 295 TVDLQMMGSKYLRMDSQKVMKIAEGLYTKGFISYPRTETDQFDKGIDLKKLVEKQISSEN 354
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG YAQRL+D G + P +G H+D AHPPIHP +++ + S+D ++YE V R FL
Sbjct: 355 WGQYAQRLID---GAFTQPRAGRHNDNAHPPIHPVIYAAPAALSSEDERRVYEFVSRRFL 411
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFI 485
AC S+ A G T +EI E+F G ++L +NYLDVY ++ W +P + G+ F
Sbjct: 412 ACCSEDAKGESTEIEIKYGDEIFHAHGLLVLERNYLDVYVYDKWESSQEMPVFTVGEVFE 471
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--------K 537
PT + G T P L+E +L+ MD GIGTDATM +HI K+ +R Y +
Sbjct: 472 PTEAKITDGKTVAPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVATRPRSGGGR 531
Query: 538 DANT--RFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADV 589
NT F PT +G ALV GYD++ L KP LR ME M+E+ G KSK +V
Sbjct: 532 GNNTVQEFIPTQLGVALVKGYDNVVNGLPDSPSLSKPFLRKEMELRMREICAGTKSKTEV 591
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
+ L + F+ + +++++L+A
Sbjct: 592 VNESLHMYREVFIHTQ-QRIEVLKA 615
>gi|321258468|ref|XP_003193955.1| DNA topoisomerase type I [Cryptococcus gattii WM276]
gi|317460425|gb|ADV22168.1| DNA topoisomerase type I, putative [Cryptococcus gattii WM276]
Length = 923
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 263/638 (41%), Positives = 380/638 (59%), Gaps = 28/638 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-----RGQPCHMLMT 62
+ VL VAEKPS+AKS+ ILS + R GR++Y + Y+F Y++ G+ + +T
Sbjct: 1 MRVLCVAEKPSIAKSITEILSGGR-WDTRNGRNQYIRNYDFLYNLAPPLGNGRGANFTVT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
+V GHL DFDE +RKW SCDP L+ APV V + K ++ L+ EAR L++W
Sbjct: 60 AVLGHLTSSDFDEDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQAEARNADILMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I EV+ C+ VN +++++RARFSA+I +IHQA + D + ADAV R
Sbjct: 120 DCDREGEHIGSEVVAACKKVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQADAVATR 179
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
+DL+IG++FTR TM L+ V D ++SYGPCQFPTLGFVV++Y +QA
Sbjct: 180 ISLDLKIGSAFTRLTTMTLQG----RVPDLAEQLISYGPCQFPTLGFVVDQYNRVQAFVP 235
Query: 243 EEFWTINCS-----HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
E FW I + E T F W R HLFD A ++YE C P A V KV +
Sbjct: 236 EMFWYIFVALEREHEDGEPNTVEFRWKRNHLFDLDLAALLYEQCTINPQARVLKVESKPA 295
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K+ P PL+T+EL++ SR M+ + + +AE LYQ G +SYPRTETD + + + +
Sbjct: 296 TKWKPLPLTTVELQQSGSRLLHMTPKRILDLAEKLYQRGIVSYPRTETDQYDPKFDFNSL 355
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+Q+Q WG YAQ+LLD G ++ P +G +DKAHPPIHPT + D ++
Sbjct: 356 IQKQTLDNQWGAYAQKLLD---GAFQKPRNGRKNDKAHPPIHPTAHAGN---LDGDERRV 409
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
+EL+ R FLA S A G T VEI+IA E+FST+G V+L +NYL+VY ++ W +P
Sbjct: 410 FELITRRFLASCSTNAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPN 469
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ G+ FIP + L G T P LL+EADL+ MDK GIGTDAT+ +HI K+++R Y +
Sbjct: 470 FEEGEVFIPDVVDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTE 529
Query: 538 DANTR---FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
R P+ +G LV G++ +G++ L KP+LR E M+ + G + K ++L
Sbjct: 530 KQEARIKYLVPSTLGVGLVEGFNAIGFDRSLSKPHLRRETEHRMQLICDGVRGKGEILQT 589
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQA 630
L++ K F+ AR + +++ + + GE Q+A
Sbjct: 590 TLEEYKEVFVKARREFQTVIDCVENYLH--GAGEAQEA 625
>gi|70989103|ref|XP_749401.1| DNA topoisomerase III [Aspergillus fumigatus Af293]
gi|66847032|gb|EAL87363.1| DNA topoisomerase III, putative [Aspergillus fumigatus Af293]
gi|159128816|gb|EDP53930.1| DNA topoisomerase III, putative [Aspergillus fumigatus A1163]
Length = 629
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 259/621 (41%), Positives = 369/621 (59%), Gaps = 25/621 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+L VAEKP++AK+VA LS Q + I + N ++EFN+ C + MTSV GH
Sbjct: 6 ILCVAEKPAIAKAVAQHLSGGSMQTISIHGNKYVKNYLFEFNFGDPWGTCSVTMTSVLGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM LDF+ +Y+ W SC P L+ APVR+ V ED K I + ++E+AR + L +W DCDRE
Sbjct: 66 LMALDFESQYKSWLSCPPGALFEAPVREFVEEDNKPIAENIKEQARMSKALFIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I EV + + N ++++RARFS + +A + L D ++ A+AV AR E+DL
Sbjct: 126 GEHIGTEVRKKAKEGNQRILVKRARFSNTERAHVLRAARALTDVDENQANAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR Q++ L+ D N ++SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 186 RIGAAFTRLQSLQLQRM----CADLSNKLISYGSCQFPTLGFVVDRYLRVKNFKPETFWG 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H E F W R HLFD + ++ E C+ TA VTKV Q+ K+ P PL+T
Sbjct: 242 IKVVHVQERKKVNFLWRRVHLFDRAAVTVMLERCLLAKTAKVTKVNQKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ SRY RM S MK AE LY G+ISYPRTETD F G +L ++++Q +W
Sbjct: 302 VDLQMMGSRYLRMDSSAVMKAAESLYTKGYISYPRTETDQFDKGIDLKKLIEKQYPDTNW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA+ L++ G ++ P SG H+D+AHPPIHP + S S + D K+YE VVR FLA
Sbjct: 362 GEYARGLIN---GAFKTPRSGRHNDRAHPPIHPVCWVS-PSALNSDEKKVYEFVVRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C S A G T +EI E+F +G ++L KNYL+VY ++ W +P + G+ F+P
Sbjct: 418 CCSDDAKGQSTEIEIQYGDEMFHANGLIVLEKNYLEVYIYDKWESSQQLPNFRVGEVFVP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------KDA 539
T + G T P L+E +L+ MD GIGTDATM +HI K+ +R Y ++A
Sbjct: 478 TEANMFEGKTTAPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGRNA 537
Query: 540 NTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
F PT +G ALV GYD++ L KP LR ME M+E+ G+KS+ +V+
Sbjct: 538 VKEFIPTRLGIALVEGYDNVVANLPDKPSLSKPFLRKEMELRMREICAGSKSRQEVVQES 597
Query: 594 LQQMKACFLDARLKKVKLLEA 614
L + F+ + +++ +L+A
Sbjct: 598 LDMYREVFIHTQ-RRIDMLKA 617
>gi|388853372|emb|CCF52992.1| related to DNA topoisomerase III alpha [Ustilago hordei]
Length = 986
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 253/616 (41%), Positives = 368/616 (59%), Gaps = 32/616 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNY---SIRGQPCHMLMTSV 64
+ +L VAEKPS+AKS+A IL+ R G+ +Y + Y+F Y ++G M MTSV
Sbjct: 1 MRILCVAEKPSIAKSIANILAHGHTSN-RPGKDKYCRNYDFQYRMPDVQGM-VDMTMTSV 58
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL E DF +++ W SC P+ L+ AP+ + D K I + L EAR +++W DC
Sbjct: 59 RGHLTEADFGPQHKGWRSCQPSHLFEAPIITGLSNDAKSIGQNLRMEARNADAVMIWTDC 118
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I E++E R V ++ + RARFSA+ID +IH A QN V+ + ADAV++R +
Sbjct: 119 DREGEHIGSEIVEEVRKVRRNIRVMRARFSAIIDSQIHAACQNTVELDWRAADAVESRIQ 178
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIGA+FTR QTM L+N D + V+SYGPCQFPTLGFVV+RY ++ +E
Sbjct: 179 LDLRIGAAFTRMQTMALQNRM--PALRDASQVISYGPCQFPTLGFVVDRYNKVVHFVAEA 236
Query: 245 FWTINCSHKSEEGT--------------ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVT 290
FW + TF+W R HLFD + + ++C + TV
Sbjct: 237 FWYLQVDKTRSMSGGDPSPDDPPDQICKVTFNWDRVHLFDKKAVEVFRDLCRAKREGTVE 296
Query: 291 KVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSS 350
V ++ K+ PYPL+T+EL+K SR R++ + + +AE LYQ GF+SYPRTETD +
Sbjct: 297 NVTNKQTKKWKPYPLTTVELQKSGSRLLRLAPKRILDIAESLYQKGFLSYPRTETDQYDK 356
Query: 351 GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW 410
+ + ++ +Q W AQRLLD G + P +G ++DKAHPPIHPT + G
Sbjct: 357 DFDFNTLIAKQTADGAWSGIAQRLLD---GAFERPRNGKNNDKAHPPIHPTAHAGG---L 410
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW 470
S D ++Y+ V R FLA A+G++T V I+IAGE F SG VIL +NYL+V+ ++ W
Sbjct: 411 SGDDKRVYDYVTRRFLASCWSDAIGSQTTVAIDIAGEKFHASGLVILQRNYLEVFTYDKW 470
Query: 471 GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLL 530
G ++P +V G++ PT L + G T PP LL+EADL++ MDK GIGTDAT+ +HI K++
Sbjct: 471 EGNLLPPFVRGERLTPTRLEMKQGCTSPPKLLTEADLVNLMDKNGIGTDATIAEHIAKVI 530
Query: 531 DRFYA--IKDANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKS 585
+R Y +K+ T + P+ +G LV GY+ + E L KP LR E M + G ++
Sbjct: 531 ERQYVMQVKEGKTNYLVPSTLGIGLVEGYNQLNLEKSLSKPLLRRETEYRMSLICAGQRT 590
Query: 586 KADVLANCLQQMKACF 601
K + + L++ + F
Sbjct: 591 KTETIQESLEEYREVF 606
>gi|169775139|ref|XP_001822037.1| DNA topoisomerase 3 [Aspergillus oryzae RIB40]
gi|238496239|ref|XP_002379355.1| DNA topoisomerase III, putative [Aspergillus flavus NRRL3357]
gi|83769900|dbj|BAE60035.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694235|gb|EED50579.1| DNA topoisomerase III, putative [Aspergillus flavus NRRL3357]
gi|391872962|gb|EIT82037.1| DNA topoisomerase III alpha [Aspergillus oryzae 3.042]
Length = 629
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 257/620 (41%), Positives = 369/620 (59%), Gaps = 25/620 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
VL VAEKP++AK+V+ LS Q + +R + N +++FN+ C + MTSV GH
Sbjct: 6 VLCVAEKPAIAKAVSQHLSGGSFQTIPVRGNQYVKNYVFDFNFGGPWGTCSVTMTSVIGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L L+F+ +Y+ W SC P L+ APV V DK I K ++E+A+ C+ L +W DCDRE
Sbjct: 66 LTTLEFERQYKGWLSCPPGALFEAPVHITVDSDKAAIAKNIQEQAKYCKALFIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I EV + + N +V++RA+FS + A ++L++ + A+AV AR E+DL
Sbjct: 126 GEHIGTEVRKQAKEGNARIVVKRAKFSNTEKAHVLNAARSLIELDDLQANAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR QT+ LK HI ++ ++SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 186 RIGAAFTRLQTLQLK--HISEALSEK--IISYGSCQFPTLGFVVDRYLRVKNFKPENFWG 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H + F W R HLFD + ++ E C+ A VTKV Q+ K+ P PL+T
Sbjct: 242 IKVMHTRDGIKVNFLWRRVHLFDRAAVTVMLERCLMAKKAKVTKVNQKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ SRY RM S+ MKVAE LY GFISYPRTETD F G +L ++++Q +W
Sbjct: 302 VDLQMMGSRYLRMDSQKIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLIEKQFPDTNW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA+ LLD G +R P +G H+D+AHPPIHP + S + S D K+YE VVR FLA
Sbjct: 362 GQYARGLLD---GGYRTPRAGRHNDQAHPPIHPICWVS-PTALSADEKKVYEFVVRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C S+ A G + VEI E+F G ++L +NYLDVY ++ W +P + G+ F P
Sbjct: 418 CCSEDAKGQTSEVEIQYGDEMFHAKGLIVLERNYLDVYVYDKWESSQQLPNFQMGELFEP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------KDA 539
T + G T PP L+E +L+ MD GIGTDATM +HI K+ +R Y ++A
Sbjct: 478 TEAKIFDGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGRNA 537
Query: 540 NTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
PT +G ALV GYD++ L KP LR ME M+E+ G+KS+ +V+
Sbjct: 538 VKELIPTRLGVALVEGYDNVVTGLPDSPSLSKPFLRKEMELRMREICAGSKSRTEVVQQS 597
Query: 594 LQQMKACFLDARLKKVKLLE 613
L+ + F+ + +++ +L+
Sbjct: 598 LEMYREVFIHTQ-RRINMLK 616
>gi|58259767|ref|XP_567296.1| DNA topoisomerase type I [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229346|gb|AAW45779.1| DNA topoisomerase type I, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 828
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/638 (40%), Positives = 372/638 (58%), Gaps = 34/638 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-----RGQPCHMLMT 62
+ VL VAEKPS+AKS+ ILS + R GR +Y + Y+F Y++ G+ + +T
Sbjct: 1 MRVLCVAEKPSIAKSITEILSGGR-WDTRNGRHQYIRNYDFLYNLAPPLGNGRGANFTVT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
+V GHL DFD+ +RKW SCDP L+ APV V + K ++ L+ EAR L++W
Sbjct: 60 AVLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQIEARNADILMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I EV+ C+ VN +++++RARFSA+I +IHQA + D + ADAV R
Sbjct: 120 DCDREGEHIGSEVVAACKKVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQADAVATR 179
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
+DL++G++FTR TM L+ V D ++SYGPCQFPTLGFVVE+Y +QA
Sbjct: 180 ISLDLKVGSAFTRLTTMTLQV----RVPDLAEQLISYGPCQFPTLGFVVEQYTRVQAFVP 235
Query: 243 EEFWTINCS-----HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
E FW I + E T F W R HLFD A ++YE C P V KV +
Sbjct: 236 ETFWYIFVALEREHEDGEPSTVEFRWKRNHLFDLDLAAVLYEQCTVNPQTRVLKVESKPA 295
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K+ P PL+T+EL++ SR M+ + + +AE LYQ G +SYPRTETD + + + +
Sbjct: 296 TKWKPLPLTTVELQQSGSRLLHMTPKRILDLAEKLYQKGIVSYPRTETDQYDPKFDFNSL 355
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+Q+Q WG YAQ+ P +G +DKAHPPIHPT + D ++
Sbjct: 356 IQKQTLDNQWGAYAQK---------SKPRNGRKNDKAHPPIHPTAHAGN---LEGDERRV 403
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
+EL+ R FLA S A G T VEI+IA E+FST+G V+L +NYL+VY ++ W +P
Sbjct: 404 FELITRRFLASCSTNAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPN 463
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ G+ FIP + L G T P LL+EADL+ MDK GIGTDAT+ +HI K+++R Y +
Sbjct: 464 FEEGEVFIPDVIDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTE 523
Query: 538 DANTR---FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
R P+ +G LV G++ +G++ L KP+LR E M+ + G + K ++L
Sbjct: 524 KQEARIKYLVPSTLGIGLVEGFNAIGFDRSLSKPHLRRETEHRMQLICDGVRGKREILQT 583
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQA 630
+++ K F+ AR + +++ + + GE Q+A
Sbjct: 584 TIEEYKEVFVKARREFQTVIDCVENYLH--GAGEAQEA 619
>gi|340520630|gb|EGR50866.1| DNA topoisomerase [Trichoderma reesei QM6a]
Length = 663
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 267/651 (41%), Positives = 367/651 (56%), Gaps = 62/651 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEKPS++K+VAG LS R++Y K Y F++ Q + MT+VT
Sbjct: 1 MRVLCVAEKPSISKAVAGHLSGG-SFTTHNTRNKYIKNYSFDFDFGQQWGSSSVTMTAVT 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL ++F Y+ W P L+ AP+ +V +DKKDI K + ++A+ + LV+W DCD
Sbjct: 60 GHLTNVEFTSEYKNWSHPPPESLFAAPIVTNVHDDKKDIAKNIADQAKYARLLVIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E+++ + N + ++RARFS + + A + LV+ ++ +AV AR E+
Sbjct: 120 REGEHIGQEIVDAAKKGNASIQVKRARFSNVERAHVLSAARRLVELDEKQVNAVAARIEL 179
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T LK + D LVLSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 180 DLRIGYAFTRFLTNNLKQLG-GPLAD---LVLSYGSCQFPTLGFVVDRYFRVKNFVPEPF 235
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I+ +H + FSW R LFD + VI+YE C+ A VTKV+++ K+ P PL
Sbjct: 236 WGISLTHNKDGKQVRFSWARNRLFDRMTVVILYERCLAAKKAKVTKVQEKPTRKFKPLPL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R RMS + M +AE LY GFISYPRTETD F G NL +VQ+Q
Sbjct: 296 TTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLRALVQKQATDQ 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG YAQ L++ G +R P G HDDKAHPPIHP + S S D +LYE VVR F
Sbjct: 356 RWGTYAQGLVN---GGFRQPREGKHDDKAHPPIHPIAHVA-PSALSYDEGRLYEYVVRRF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LAC S+ A G T +++ E FST G ++L +NYLDVY +E+W +P + G+QF
Sbjct: 412 LACCSEDAQGMATDIDVQFGDERFSTRGVIVLERNYLDVYIYENWTNTTELPRFTVGEQF 471
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK------- 537
PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ DR Y
Sbjct: 472 EPTEAMMTEGKTSPPNYLTEADLIALMDANGIGTDATMAEHIQKIQDREYVATTTRGGTT 531
Query: 538 -----DANTRFAP------------------------------------TNIGEALVMGY 556
D AP T +G AL++G+
Sbjct: 532 AADGDDEEHDEAPAARGGRGRGRGRGGRGRGGGGSTRGGSGSGIKVFVPTQLGVALILGF 591
Query: 557 DDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
D M +E L KP LR ME MK + G+ ++ +VL + Q K FL ++
Sbjct: 592 DRMSFETSLGKPFLRKEMELQMKAICQGSTTRREVLDRSIAQYKQVFLQSQ 642
>gi|219122509|ref|XP_002181586.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406862|gb|EEC46800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1009
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 276/694 (39%), Positives = 401/694 (57%), Gaps = 56/694 (8%)
Query: 9 NVLNVAEKPSVAKSVAGILSK-----NQGLRIREGR---SRYNKIYEFNYSIRGQPC--- 57
VLNVAEKPSVA+++A + ++ ++G+R REG S N + +S C
Sbjct: 43 TVLNVAEKPSVARALASVFARLPNAVDRGMR-REGNQVFSHENVCFPSVFSQGNGVCVQG 101
Query: 58 ---------HMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTL 108
+M+ TSV GHL DF Y W CDP L+ AP+ +D + +++ L
Sbjct: 102 PSTSQRAALYMITTSVRGHLASQDFPPAY-GWSKCDPIALFEAPIETSYRDDMQPLERML 160
Query: 109 EEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL 168
+ +R+ Q L+LWLDCDREGE I EV VC N L + RARFS ++ EI +A+Q L
Sbjct: 161 KSLSRQAQVLILWLDCDREGEAIGDEVRTVCLGSNSRLQVYRARFSTVLPVEIERALQTL 220
Query: 169 VDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLG 228
N++ AV AR +DLR+GA+FTRFQT+ L+ D + V+SYGPCQFPTLG
Sbjct: 221 GRVNEYMVAAVQARSTLDLRVGAAFTRFQTLRLQR-KFDGFAEQG--VISYGPCQFPTLG 277
Query: 229 FVVERYWEIQAHESEEFWTINCS--------HKSEEG-------------TATFSWMRGH 267
FVVER+ I+ E+FW + + +S+E T FSW RG+
Sbjct: 278 FVVERWARIETFIPEDFWHLELAISVDDTYHQQSQEEDQSAARGRTQQNRTIHFSWKRGY 337
Query: 268 LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMK 327
L+D +++E C++ A VT + + + K+ P PL+T+EL+KRAS Y R+ SE M
Sbjct: 338 LYDKLLTTVLFEECLEAGEAVVTAMNGRTRNKWRPVPLATVELQKRASMYLRIGSETLMS 397
Query: 328 VAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG-HPDWGPYAQRLLDHAAGLWRNPG 386
AE+LYQ G+ISYPRTET+ F ++Q+ ++G YA +LL+ ++ P
Sbjct: 398 AAEELYQQGYISYPRTETERFRPEFEHRPLIQQFSSLQGEFGAYASKLLNENG--FQIPR 455
Query: 387 SGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+G DD+AHPPI P K + Q K+Y L+V+H+LAC S+ AVG T + + +
Sbjct: 456 AGKSDDQAHPPITPAKAVDPNTIQDQIQRKIYSLIVKHYLACCSRDAVGRGTTLTVRMGT 515
Query: 447 EVFSTSGRVILAKNYLDVYR-FESWG---GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLL 502
E F+ +G +++ KN+L++Y +E WG G + P V G + PT+ + G + PP +
Sbjct: 516 EEFNATGLMVIEKNWLEIYSPWERWGSGQGELPPLQV-GSRIRPTSFLMKEGRSGPPQPI 574
Query: 503 SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYE 562
SE +L+S MD+ GIGTDAT+ HI +LDR YA KD +F PT +G ALV GY+ MGY+
Sbjct: 575 SEVELISLMDRNGIGTDATIAQHISTILDREYARKDGRQKFLPTPLGIALVEGYNSMGYQ 634
Query: 563 LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERW 622
L KP+LR ME++ EV+ G K+K +++ L +MK+C+ AR + KL EA+ F R
Sbjct: 635 LNKPDLRREMEAECNEVASGRKTKEEIMVPILAKMKSCYETARAEARKLDEAVARHFPRL 694
Query: 623 SGGED-QQAAGEVVRQCGICQESNMVLKKSRDGN 655
GE Q E +CG+C+ S M LK+ R+ N
Sbjct: 695 GAGESTSQVVEESFSECGVCRNS-MALKQERENN 727
>gi|342885903|gb|EGU85855.1| hypothetical protein FOXB_03703 [Fusarium oxysporum Fo5176]
Length = 656
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 269/650 (41%), Positives = 362/650 (55%), Gaps = 59/650 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEKPS++K+VA LS + + R++Y K Y F++ Q C + MT VT
Sbjct: 1 MRVLCVAEKPSISKAVATHLSGGR-IETNNTRNKYIKNYSFDFDFGRQLGNCSVTMTCVT 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL +DF ++ W+ P L+ AP+ V EDKK I + LE +AR Q LV+W DCD
Sbjct: 60 GHLTNVDFTPAHKNWYQPPPESLFTAPIVTSVSEDKKTIAQNLESQARYAQALVIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E++E R + + RARFS + + A +NL ++ AV AR E+
Sbjct: 120 REGEHIGNEIVEAARKGKPGIQVLRARFSNVERAHVISAAKNLATLDERQVHAVSARIEL 179
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T L+ L LSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 180 DLRIGYAFTRFLTNNLRPLG----GPMEKLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPF 235
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I H + F W+R LFD S VI+YE C+ TATVTKV+Q+ K+ P PL
Sbjct: 236 WSIKLMHTRDGKKVDFFWLRNRLFDRMSTVILYERCLAAKTATVTKVQQKPTRKFKPLPL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R +MS + M +AE LY GFISYPRTETD F G NL +V++Q
Sbjct: 296 TTVELQKAATRLLQMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLRALVEKQTSDQ 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +AQ L A+G ++ P G HDDKAHPPIHP ++S S S+D +LYE V R F
Sbjct: 356 RWGSFAQNL---ASGAFKQPREGRHDDKAHPPIHPITYAS-PSILSRDEARLYEYVARRF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LAC S A G T VE+ E F+ G ++L +NYLDV+ +E W V +P + G++F
Sbjct: 412 LACCSDDAHGMATDVELEFGEERFNAHGVIVLERNYLDVFIYEKWNNTVELPKFTEGERF 471
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT + G T P L+E+DL++ MD GIGTDATM +HI+K+ DR Y
Sbjct: 472 QPTEAMMTEGKTTAPGYLTESDLIALMDANGIGTDATMAEHIQKIQDREYVATISRSGQT 531
Query: 537 ----KDANTR---------------------------------FAPTNIGEALVMGYDDM 559
+DA+T F PT +G AL++G+D M
Sbjct: 532 SADDEDADTSTSTRGRGRGRGGRGARGGRGGSSSSGGRGGLKVFVPTQLGVALILGFDRM 591
Query: 560 GYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+E L KP LR ME MK + G +K VL L Q K F ++ K
Sbjct: 592 NFETSLGKPFLRKEMEIKMKAICEGRTNKEVVLRESLAQYKHVFEQSQQK 641
>gi|322707318|gb|EFY98897.1| DNA topoisomerase III [Metarhizium anisopliae ARSEF 23]
Length = 680
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 267/681 (39%), Positives = 376/681 (55%), Gaps = 87/681 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ---PCHMLMTSV 64
+ VL VAEKPS++K+VAG LS ++ R++Y K Y F++ GQ PC + MT V
Sbjct: 1 MRVLCVAEKPSISKAVAGHLSGG-SMQTHGTRNQYIKNYSFDFDF-GQALGPCSVTMTCV 58
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHV--------------------PEDKKDI 104
TGHL ++F Y+ W P L++AP+ + +DKK I
Sbjct: 59 TGHLTNVEFTSEYKNWSYPPPETLFNAPIVTSIHDVCVDAYVNHSGFVANCLDNQDKKSI 118
Query: 105 KKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQA 164
K L ++A+ + LV+W DCDREGE+I E+++ R N + ++RA+FS + + A
Sbjct: 119 AKNLADQAQYARLLVIWTDCDREGEHIGQEIVDAARKGNASIQVKRAKFSNVERAHVLSA 178
Query: 165 VQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFH--IDSVTDDRNLVLSYGPC 222
+ LVD ++ DAV R E+DLRIG +FTRF T L+ ++S+T LSYG C
Sbjct: 179 ARRLVDLDKKQVDAVSTRIELDLRIGYAFTRFMTNSLRPLGGPMESLT------LSYGSC 232
Query: 223 QFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCV 282
QFPTLGFVV+RY+ ++ E FW+I+ H + FSW R LFD + +I+YE C+
Sbjct: 233 QFPTLGFVVDRYFRVKNFIPEPFWSISLMHNRDGKKVNFSWERNRLFDRMTTIILYERCL 292
Query: 283 QEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
TA V V+++ KY P PL+T+EL+K A+R RMS + M VAE LY GFISYPR
Sbjct: 293 LAKTAKVINVQERATRKYKPLPLTTVELQKAATRLLRMSGQQAMMVAEGLYNKGFISYPR 352
Query: 343 TETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK 402
TETD F G NL G+VQ+Q WG +AQ L++ G ++ P G HDDKAHPPIHP
Sbjct: 353 TETDRFDKGMNLKGLVQKQSPDQRWGQFAQNLVN---GAFKQPREGRHDDKAHPPIHPIT 409
Query: 403 FSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462
+++ S S D +LYE VVR FLAC S+ A+G T V++ E+F + G ++L +NYL
Sbjct: 410 YAA-PSVLSPDEGRLYEYVVRRFLACCSEDALGMATTVDLQYGDEIFGSHGVIVLERNYL 468
Query: 463 DVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
DV+ ++ W +P +V G+ F PT + T PP L+EADL++ MD GIGTDATM
Sbjct: 469 DVFVYDKWDNNELPRFVRGEVFQPTEAIMSERKTSPPSHLTEADLIALMDANGIGTDATM 528
Query: 523 HDHIKKLLDRFYAIKDANTR---------------------------------------- 542
+HI+K+ DR Y N+
Sbjct: 529 AEHIQKIQDREYVATVGNSATIASEDDDGVQDRASSGRGRGRARARGGRAARGTSTSSSG 588
Query: 543 -------FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
F PT +G AL++GYD MG+E L KP LR ME MK + G +K VL
Sbjct: 589 RRGGVRVFIPTQLGVALILGYDRMGFETSLGKPFLRKEMELKMKAICEGRTTKEVVLRES 648
Query: 594 LQQMKACFLDARLKKVKLLEA 614
+ Q + F+ + +K+ +L A
Sbjct: 649 ITQYRQVFMQTQ-EKLDVLRA 668
>gi|68075963|ref|XP_679901.1| DNA topoisomerase III [Plasmodium berghei strain ANKA]
gi|56500744|emb|CAH93722.1| DNA topoisomerase III, putative [Plasmodium berghei]
Length = 674
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 258/659 (39%), Positives = 377/659 (57%), Gaps = 73/659 (11%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
GR I VLNVAEKPSVA ++ ILSK + + ++ S+YN ++ F+Y + + M +TSV
Sbjct: 2 GR-IKVLNVAEKPSVASAIVSILSKGESNK-KKSYSKYNPVFTFDYKMENETWSMFVTSV 59
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
TGHL + FD++Y+ W++ DP +L+ A + ++ +DKK I+ L++ ++ C L+LWLDC
Sbjct: 60 TGHLTDQKFDDKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLILWLDC 119
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE I FEVI C N L + RA+FSA+ +++I A+ NL PN+ A +VD R+E
Sbjct: 120 DREGE-ICFEVINACSVTNKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQSVDVRRE 178
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVV-----------ER 233
IDLR+G+ FTRF T+ + V +D ++ SYGPCQFPTLGFVV E
Sbjct: 179 IDLRMGSIFTRFMTIR----YFKLVQNDTKII-SYGPCQFPTLGFVVNRYLQIKNFNNEY 233
Query: 234 YWEI---------QAHESEEFW-------------------TINCS-HKSEEGTAT---- 260
YW I ++ S F NCS + S + A
Sbjct: 234 YWTIKMGYLYQDKNSNNSNLFLDNIGKNKKEREKKKKKGKKKKNCSDYYSSDDDANNSYG 293
Query: 261 ---------------FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
F+W R LFD+ V+IYE ++ P ++ + ++E KY P+PL
Sbjct: 294 INNRPYSSNTNYVVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPFPL 353
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+++ K S+YF +SS+ M +AE LY G+ISYPRTET+ F NL I+ E +
Sbjct: 354 NTLQMTKLVSKYFHISSKECMNIAEKLYSKGYISYPRTETNYFVDSMNLRKIIHELKKNN 413
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+G YA +L + + P G +DKAHPPIHP K + + +K+YE + RHF
Sbjct: 414 IFGNYATKLAEKNSC---KPIKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICRHF 470
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LA S A+G +T V NI E F G I KNYL++Y +E W ++P + +F
Sbjct: 471 LAVCSDDAIGFDTKVVANIGEEQFYCKGLKIKNKNYLEIYIYEKWNDKILPPFQINDEFY 530
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
P +L ++ G+T+PP LSE+DLLS MDK GIGTDATMH+HI+ + R Y K++ F P
Sbjct: 531 PYSLVVEEGITQPPKYLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVYKNSKNLFIP 590
Query: 546 TNIGEALVMGY---DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T +G AL++ Y D+G +L +P+LR+ ME DM V+ G K K +++ N + MK +
Sbjct: 591 TKLGIALILSYKKFKDIGVDLTEPSLRAKMERDMFLVASGEKGKNEIIRNYIDIMKYIY 649
>gi|401420366|ref|XP_003874672.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490908|emb|CBZ26172.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 948
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 263/599 (43%), Positives = 360/599 (60%), Gaps = 27/599 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK +A LS R + +SR+N +YEF + + ML+TSV GHLME
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGN-CRTAQSQSRFNPVYEFKFEGKT----MLVTSVAGHLME 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F + W + L+ AP+ K+V D + +KK LE A R + LVLWLDCDREGEN
Sbjct: 60 DQFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALASRAETLVLWLDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V ++ + ++RA FSAL R++ AV NL P++ +DAV+ARQE+DLRIG
Sbjct: 120 ICFEVMQVVQSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+FTR+QT+ + H+ + VLS+GPCQFPTLGFVV RYW+ Q E+F+T+
Sbjct: 180 AAFTRYQTVKFR--HLFAAIPG---VLSFGPCQFPTLGFVVRRYWQQQGFVPEDFFTLQL 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT-----VTKVRQQEKLKYPPYPL 305
H G F RG ++D +A +IYE +Q A +T V+Q+ + PP PL
Sbjct: 235 QH----GDTKFHSSRGSMYDQVAATLIYEDMLQAAAADGHKGRITNVQQRPSHRRPPVPL 290
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGH 364
+T+ ++K A+ + R++SE M +AE LYQ G ISYPRTETDS++ + L +V+ Q +
Sbjct: 291 ATVVMQKLAATHLRITSERCMTLAESLYQEGLISYPRTETDSYTFQESELLELVRVQTAN 350
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY-KLYELVVR 423
D YA +L A R P GGHDDKAHPPIHPTK + +QD +LY L+VR
Sbjct: 351 ADVAEYATAMLADIATHVRPPLRGGHDDKAHPPIHPTKAWNA----TQDERGRLYNLIVR 406
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HFLA +S AV A T V GE+FS G IL + +LD++ +E W IP Y G
Sbjct: 407 HFLASLSPDAVAATTQVSAEFGGELFSAGGTTILQRGWLDIFPYERWNNTCIPNYQIGDM 466
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
F PT + L G T PP L+E L+S MD GIGTDAT+ HIK +LDR Y ++ +
Sbjct: 467 FQPTAVPLKKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDREYVRREGQS-L 525
Query: 544 APTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G AL Y+ +G L +P LR+ ME M +++ G +K V+A +Q + F
Sbjct: 526 VPTTLGIALASAYESLGLASLLQPQLRAQMELAMGDIANGAATKEQVVAAAVQLYEEIF 584
Score = 39.3 bits (90), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ C C + + L+ G + C +P C V LP + S + C +C+
Sbjct: 752 ITTCIACCQHELRLRSGAKG-FFLSCRGYPSCHLRVSLPAAASVKPSPSQRCPACS---A 807
Query: 695 YLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICG 733
L+ F F + PG N+ C+ CD ++ I + G
Sbjct: 808 VLLTFDFSGRQGVPGLNMLDAICV-RCDARIKDYITVKG 845
>gi|46124677|ref|XP_386892.1| hypothetical protein FG06716.1 [Gibberella zeae PH-1]
Length = 695
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 263/644 (40%), Positives = 358/644 (55%), Gaps = 59/644 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEKPS++K+VA L+ + + R++Y K Y F++ Q C MT VT
Sbjct: 1 MKVLCVAEKPSISKAVATHLAGGR-VETHNTRNKYIKNYSFDFDFGQQLGQCSTTMTCVT 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL +DF + W+S P L+ AP+ + EDKK I + LE +AR Q LV+W DCD
Sbjct: 60 GHLTNVDFTPANKSWYSPPPESLFTAPIVTTISEDKKTIAQNLESQARYAQVLVIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E++E R + + RARFS + + A +NL ++ +AV R E+
Sbjct: 120 REGEHIGNEIVEAARKGKPGIRVLRARFSNIERAHVISAARNLTTLDERQVNAVATRIEL 179
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T L+ L LSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 180 DLRIGYAFTRFLTNNLRKLG----GPLEGLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPF 235
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I +H + FSW+R LFD S VI+YE C+ TATVTKV+Q+ K+ P PL
Sbjct: 236 WSIKLTHNRDSKKVDFSWLRNRLFDRMSTVILYERCLAAKTATVTKVQQKPTRKFKPLPL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R MS + M +AE LY GFISYPRTETD F G NL +V +
Sbjct: 296 TTVELQKAATRLLHMSGQQAMTIAEGLYNKGFISYPRTETDRFDRGMNLRALVDKHTNDQ 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WGP+AQ L++ G ++ P G +DDKAHPPIHP ++S + ++D +LYE VVR F
Sbjct: 356 RWGPFAQNLVN---GGFQQPREGRNDDKAHPPIHPITYAS-PTVLNRDEGRLYEYVVRRF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LAC S A G + VE+ E F+ G ++L +NYLDV+ +E W V +P + G++F
Sbjct: 412 LACCSDDAKGMASDVEVEFGDERFNAHGVIVLERNYLDVFVYEKWNNTVELPRFTEGERF 471
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA--------- 535
PT + G T P L+EADL++ MD GIGTDATM +HI+K+ DR YA
Sbjct: 472 QPTEAMMTEGKTSAPGFLTEADLIALMDANGIGTDATMAEHIQKIQDREYAATIGRSGPA 531
Query: 536 ----------------------------IKDANTR--------FAPTNIGEALVMGYDDM 559
A+T F PT +G AL++G+D M
Sbjct: 532 PGDGEEPDTGPPTRGRGRGRGGRGSRGGRGGASTSGGRGGIKVFVPTQLGVALILGFDRM 591
Query: 560 GYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+E L KP LR ME MK + G +K VL L Q + F
Sbjct: 592 NFETSLGKPFLRKEMEIKMKAICDGRANKEAVLRESLAQYRLVF 635
>gi|121710650|ref|XP_001272941.1| DNA topoisomerase III, putative [Aspergillus clavatus NRRL 1]
gi|119401091|gb|EAW11515.1| DNA topoisomerase III, putative [Aspergillus clavatus NRRL 1]
Length = 629
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 257/620 (41%), Positives = 369/620 (59%), Gaps = 25/620 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+L VAEKP++AK+VA LS + + IR + N ++EFN+ C + MTSV GH
Sbjct: 6 ILCVAEKPAIAKAVAQHLSGGSMRTISIRGNQYVKNYLFEFNFGDPWGTCSVTMTSVLGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LM LDF+ +Y+ W SC P L+ APV ++V DK+ I + + ++AR + L +W DCDRE
Sbjct: 66 LMALDFESQYKGWQSCPPGSLFEAPVHEYVETDKQPIAENIRDQARASKALFIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I EV + N ++++RARFS + +A + L+D ++ A+AV AR E+DL
Sbjct: 126 GEHIGTEVRLQAKKGNGRILVKRARFSNTERAHVLRAARALIDVDENQANAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR Q + LK ++TD ++SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 186 RIGAAFTRLQCLQLKPLSA-ALTDK---IISYGSCQFPTLGFVVDRYLRVKNFKPETFWG 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H E F W R HLFD ++ E C+ A VTKV Q+ K+ P PL+T
Sbjct: 242 IKVMHVQEGMKVNFLWRRVHLFDRAVVTVMMERCLLAKKAKVTKVNQKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ SRY RM S+ M++AE LY GFISYPRTETD F G +L ++++Q +W
Sbjct: 302 VDLQMMGSRYLRMDSQKVMRIAEALYTKGFISYPRTETDQFDKGIDLKKLIEKQFPDGNW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA+ L++ G ++ P SG ++D+AHPPIHP + S S S D K+YE VVR FLA
Sbjct: 362 GDYARGLIN---GAFKTPRSGKNNDQAHPPIHPVCWVS-PSALSADEKKVYEFVVRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C S A G T VEI E+F +G ++L KNYL+VY ++ W +P + G+ F P
Sbjct: 418 CCSDDAKGQATEVEIQYGEEMFHANGLIVLEKNYLEVYVYDKWESSQELPNFRDGELFEP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------KDA 539
T + G T PP L+E +L+ MD GIGTDATM +HI K+ DR Y ++A
Sbjct: 478 TEAKIFEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKDREYVAVHSRGSGRNA 537
Query: 540 NTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
F PT +G ALV GYD++ L KP LR ME M+E+ G+K++ +V+
Sbjct: 538 VKEFIPTRLGIALVEGYDNVVAHLPDKPSLSKPFLRKEMELRMREICAGSKTRQEVVQES 597
Query: 594 LQQMKACFLDARLKKVKLLE 613
L + F+ + +++ +L+
Sbjct: 598 LDMYREVFIQTQ-RRIHMLK 616
>gi|389603297|ref|XP_001568961.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505799|emb|CAM44094.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 951
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 277/651 (42%), Positives = 380/651 (58%), Gaps = 47/651 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK +A LS R + +SR+N ++EFN+ + ML+TSV GHLME
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGH-CRTVQSQSRFNPVFEFNFEGKT----MLVTSVVGHLME 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F + W + L+ AP+ K+V D + +KK LE A R L+LWLDCDREGEN
Sbjct: 60 DQFPPNTKNWSTYPFQGLFSAPISKYVRTDLEPVKKNLEALATRADALILWLDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V ++ + ++RA FSAL R++ AV NL P++ +DAV+ARQE+DLRIG
Sbjct: 120 ICFEVMQVVQSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+FTR+QT+ ++ + VLS+GPCQFPTLGFVV RYW+ Q E+F+T+
Sbjct: 180 ATFTRYQTVKFRHLFAEVPG-----VLSFGPCQFPTLGFVVRRYWKQQGFVPEDFFTLQV 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT-----VTKVRQQEKLKYPPYPL 305
H G F RG L+D +A +IYE +Q A +T V+Q+ + PP PL
Sbjct: 235 QH----GDTKFYSSRGSLYDQVAATLIYEDMLQAAAAEGHKGRITNVQQRPSRRRPPVPL 290
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGH 364
+T+ ++K A+ + R+SSE M +AE LYQ G ISYPRTETDS++ + L +++ QI +
Sbjct: 291 ATVIMQKLAATHLRISSERCMTLAESLYQEGLISYPRTETDSYTFQESELLELIRLQIAN 350
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF--SSGESRWSQDHYKLYELVV 422
PD YA +L A R P GGHDDKAHPPIHPTK ++ + R S LY L+V
Sbjct: 351 PDVAEYATAMLADIAARVRPPLRGGHDDKAHPPIHPTKAWNATRDERGS-----LYNLIV 405
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLA +S AV A T V GE FST G I+ + +LD++ +E W IP Y G
Sbjct: 406 RHFLASLSPDAVAATTRVSAEFGGESFSTGGTTIVQRGWLDIFPYERWDSTCIPNYQIGD 465
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
F PT + L G T PP L+E+ L+S MD GIGTDAT+ HIK +LDR Y ++ +
Sbjct: 466 TFEPTAVLLKKGRTSAPPHLTESRLISLMDSNGIGTDATIAQHIKTVLDREYVRREGQS- 524
Query: 543 FAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G AL Y+ +G L +P LR+ ME M +++ G +KA V+A +Q + F
Sbjct: 525 LVPTTLGIALASAYESLGLASLLQPQLRAQMELAMGDIANGAATKAQVVAAAVQLYEEIF 584
Query: 602 LDARLKKVKLLEAMGIFFE------RWSGGEDQQAAGEVVR-----QCGIC 641
+L+ + G F+E R + D A V QCG C
Sbjct: 585 -------SRLMASTGAFYEELKRHLRLAAETDTHAVQVTVVKDNFIQCGTC 628
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ C C + + L+ +G + C +P C +V LP + S + C +C
Sbjct: 754 ITTCIACHQHELRLRPGPNG-FFLSCRGYPSCHLSVSLPAAASVKPSPSQRCPACN---A 809
Query: 695 YLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICG 733
L+ F F + PG N+ CI CD ++ I + G
Sbjct: 810 VLLTFDFSGRQGVPGLNMLDTICI-RCDARIKDYITVKG 847
>gi|146104103|ref|XP_001469727.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134074097|emb|CAM72839.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 947
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 265/599 (44%), Positives = 357/599 (59%), Gaps = 27/599 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK +A LS R +SR+N +YEF + + ML+TSV GHLME
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGN-CRTVPSQSRFNPVYEFKFEGKT----MLVTSVAGHLME 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F + W + L+ AP+ K+V D + +KK LE A R LVLWLDCDREGEN
Sbjct: 60 DQFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADTLVLWLDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V ++ + ++RA FSAL R++ AV NL P++ +DAV+ARQE+DLRIG
Sbjct: 120 ICFEVMQVVQSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+FTR+QT+ + H+ + VLS+GPCQFPTLGFVV RYW+ Q E+F+T+
Sbjct: 180 AAFTRYQTVKFR--HLFAAIPG---VLSFGPCQFPTLGFVVRRYWQQQGFVPEDFFTLQL 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT-----VTKVRQQEKLKYPPYPL 305
H G F RG ++D +A +IYE +Q A +T V+Q+ + PP PL
Sbjct: 235 QH----GDTKFHSSRGSMYDQVAATLIYEDMLQAAAAEGHKGRITNVQQRPSHRRPPVPL 290
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGH 364
+T+ ++K A+ + R+ SE M +AE LYQ G ISYPRTETDS++ + L +V+ QI +
Sbjct: 291 ATVVMQKLAATHLRIPSERCMTLAESLYQEGLISYPRTETDSYTFQESELLELVRVQIAN 350
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY-KLYELVVR 423
D Y +L A R P GGHDDKAHPPIHPTK + +QD +LY L+VR
Sbjct: 351 ADVAEYVAAMLADIATRVRPPLRGGHDDKAHPPIHPTKAWNA----TQDERGRLYNLIVR 406
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HFLA +S AV A T V GE+FST G IL + +LD++ +E W IP Y G
Sbjct: 407 HFLASLSPDAVAATTQVSAEFGGELFSTGGTTILQRGWLDIFPYERWNNTCIPNYQIGDT 466
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
F PT + L G T PP L+E L+S MD GIGTDAT+ HIK +LDR Y +K
Sbjct: 467 FQPTAVPLKKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDREY-VKREGQSL 525
Query: 544 APTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G AL Y+ +G L +P LR+ ME M +++ G +K V+A +Q + F
Sbjct: 526 VPTTLGIALASAYESLGLASLLQPQLRAQMELAMGDIANGAATKEQVVAAAVQLYEEIF 584
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ C C++ + L+ +G + C +P C V LP + S + C +C+
Sbjct: 752 ITTCIACRQHELRLRSGANG-FFLSCRGYPSCHLRVSLPAAASVKPSPSQRCPACS---A 807
Query: 695 YLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICG 733
L+ F F + PG ++ C+ CD ++ I + G
Sbjct: 808 VLLTFDFSGRQGVPGLDMLDTICV-RCDARIKDYIAVKG 845
>gi|408398943|gb|EKJ78068.1| hypothetical protein FPSE_01529 [Fusarium pseudograminearum CS3096]
Length = 666
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 261/644 (40%), Positives = 360/644 (55%), Gaps = 59/644 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEKPS++K+VA L+ + + R++Y K Y F++ Q C MT VT
Sbjct: 1 MKVLCVAEKPSISKAVATHLAGGR-VETHNTRNKYIKNYSFDFDFGQQLGQCSTTMTCVT 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL +DF + W+S P L+ AP+ + +DKK I + LE +AR Q LV+W DCD
Sbjct: 60 GHLTNVDFTPANKSWYSPPPESLFTAPIVTTISDDKKTIAQNLESQARYAQVLVIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E++E R + + RARFS + + A +NL ++ +AV R E+
Sbjct: 120 REGEHIGNEIVEAARKGKPGIRVLRARFSNIERAHVISAARNLTTLDERQVNAVATRIEL 179
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T L+ L LSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 180 DLRIGYAFTRFLTNNLRKLG----GPLEGLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPF 235
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I +H + FSW+R LFD S VI+YE C+ TATVTKV+Q+ K+ P PL
Sbjct: 236 WSIKLTHNRDGKKVDFSWLRNRLFDRMSTVILYERCLAAKTATVTKVQQKPTRKFKPLPL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R MS + M +AE LY GFISYPRTETD F G NL +V +
Sbjct: 296 TTVELQKAATRLLHMSGQQAMTIAEGLYNKGFISYPRTETDRFDRGMNLRALVDKHTNDQ 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WGP+AQ L++ G ++ P G +DDKAHPPIHP ++S + ++D +LYE VVR F
Sbjct: 356 RWGPFAQNLVN---GAFQQPREGRNDDKAHPPIHPITYAS-PTVLNRDEGRLYEYVVRRF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LAC S A G + VE+ E F+ G ++L +NYLDV+ +E W V +P + G++F
Sbjct: 412 LACCSDDAKGMASDVEVEFGDERFNAHGVIVLERNYLDVFVYEKWNNTVELPRFTEGERF 471
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT + G T P L+EADL++ MD GIGTDATM +HI+K+ DR YA
Sbjct: 472 QPTEAMMTEGKTSAPGFLTEADLIALMDANGIGTDATMAEHIQKIQDREYAATIGRSGPA 531
Query: 537 ----KDANTR---------------------------------FAPTNIGEALVMGYDDM 559
++++T F PT +G AL++G+D M
Sbjct: 532 PGDDEESDTGPPTRGRGRGRGGRGSRGGRGGASTSGGRGGIKVFVPTQLGVALILGFDRM 591
Query: 560 GYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+E L KP LR ME MK + G +K VL L Q + F
Sbjct: 592 NFETSLGKPFLRKEMEIKMKAICDGRANKEVVLRESLAQYRLVF 635
>gi|398024578|ref|XP_003865450.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322503687|emb|CBZ38773.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 947
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/599 (44%), Positives = 356/599 (59%), Gaps = 27/599 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK +A LS R +SR+N +YEF + + ML+TSV GHLME
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGN-CRTVPSQSRFNPVYEFKFEGKT----MLVTSVAGHLME 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F + W + L+ AP+ K+V D + +KK LE A R LVLWLDCDREGEN
Sbjct: 60 DQFPPNTKNWSTYPFQGLFLAPITKYVRADLEPVKKNLEALAGRADTLVLWLDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V ++ + ++RA FSAL R++ AV NL P++ +DAV+ARQE+DLRIG
Sbjct: 120 ICFEVMQVVQSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+FTR+QT+ + H+ + VLS+GPCQFPTLGFVV RYW+ Q E+F+T+
Sbjct: 180 AAFTRYQTVKFR--HLFAAIPG---VLSFGPCQFPTLGFVVRRYWQQQGFVPEDFFTLQL 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT-----VTKVRQQEKLKYPPYPL 305
H G F RG ++D +A +IYE +Q A +T V+Q+ + PP PL
Sbjct: 235 QH----GDTKFHSSRGSMYDQVAATLIYEDMLQAAAAEGHKGRITNVQQRPSHRRPPVPL 290
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGH 364
+T+ ++K A+ + R+ SE M +AE LYQ G ISYPRTETDS++ + L +V+ QI +
Sbjct: 291 ATVVMQKLAATHLRIPSERCMTLAESLYQEGLISYPRTETDSYTFQESELLELVRVQIAN 350
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY-KLYELVVR 423
D Y +L A R P GGHDDKAHPPIHPTK + +QD +LY L+VR
Sbjct: 351 ADVAEYVAAMLADIATRVRPPLRGGHDDKAHPPIHPTKAWNA----TQDERGRLYNLIVR 406
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HFLA +S AV A T V GE+FST G IL + +LD++ +E W IP Y G
Sbjct: 407 HFLASLSPDAVAATTQVSAEFGGELFSTGGTTILQRGWLDIFPYERWNNTCIPNYQIGDT 466
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
F PT + L G T PP L+E L+S MD GIGTDAT+ HIK +LDR Y +K
Sbjct: 467 FQPTAVPLKKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDREY-VKREGQSL 525
Query: 544 APTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G AL Y+ +G L +P LR+ ME M +++ G +K V+ +Q + F
Sbjct: 526 VPTTLGIALASAYESLGLASLLQPQLRAQMELAMGDIANGAATKEQVVTAAVQLYEEIF 584
>gi|302406450|ref|XP_003001061.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
gi|261360319|gb|EEY22747.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
Length = 658
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 267/658 (40%), Positives = 367/658 (55%), Gaps = 58/658 (8%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSV 64
+ VL VAEKPS++K+V LS Q + R R+ K Y FN++ G P C + MT+V
Sbjct: 1 MRVLCVAEKPSISKAVTDHLSGGQA-QTRNTNDRFTKNYCFNFNF-GPPWNQCDVTMTAV 58
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL+ ++F + W P L+HAP+ V DKK + +E++AR C L++W DC
Sbjct: 59 RGHLLGMEFTPANKNWQYPPPDSLFHAPIVTTVASDKKAVADNIEQQARYCDLLIIWTDC 118
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENI E++ + + + ++RA+FS + + QA +NLVD ++ ADAVDAR E
Sbjct: 119 DREGENIGREIVGLAKKGKPTIRVKRAKFSNIERTHVIQAAKNLVDLDERQADAVDARME 178
Query: 185 IDLRIGASFTRFQTMLLK---------------NFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+DLRIG +FTRF T L+ +F + + R L+++ G CQFPTLGF
Sbjct: 179 LDLRIGYAFTRFLTTNLRTLGGPLVEMIISYGRSFRLSPPSRRRLLLMNPGSCQFPTLGF 238
Query: 230 VVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATV 289
VV+RY+ ++ +E+FW+I+ +H E F+W R LFD + I+YE C+Q TA V
Sbjct: 239 VVDRYFRVKNFVAEKFWSIHVNHTQEGKKVKFAWSRNRLFDRMAVTILYERCIQARTAKV 298
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS 349
TKV+++ K+ P PL+T+EL+K A+R RMS + M VAEDLY GFISYPRTETD F
Sbjct: 299 TKVQEKPTRKWKPLPLTTVELQKAATRLLRMSGQQAMSVAEDLYNKGFISYPRTETDRFD 358
Query: 350 SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESR 409
NL +VQ+Q WGPYAQ LL +G + P G HDDKAHPPIHP F+S S
Sbjct: 359 KEINLRNLVQKQTQSDAWGPYAQDLL---SGSFSQPRQGRHDDKAHPPIHPVTFAS-PSV 414
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFES 469
+ D +LYE +VR FLAC S A G T V+I E F G +L +NYLDV+ +E
Sbjct: 415 LTHDAKRLYEYIVRRFLACCSDDAKGVSTNVDILYGEESFHAHGLHVLERNYLDVFVYEK 474
Query: 470 WGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKK 528
W +P + G+ F PT L G T PP L+EADL++ MD GIGTDATM +HI+K
Sbjct: 475 WNDTTELPKFRVGEVFQPTEAMLTDGKTSPPSYLTEADLIALMDINGIGTDATMAEHIQK 534
Query: 529 LLDRFYAIKDANTRFAPTNIGEALVMGY-------------------------------- 556
+ DR YA T A + + + +
Sbjct: 535 IQDREYAALVDQTGPA-HRMTTTMRLSHRRPEEGEEGAAAAVEAEAEVVVEDAEERHPPA 593
Query: 557 DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
D + L KP LR ME+ MK + G S+A+VL + Q + F + K L EA
Sbjct: 594 DGVVSSLGKPFLRKEMEAQMKAICEGRASRAEVLQQNIGQYRQVFALTQEKMNTLKEA 651
>gi|319921909|gb|ADV78573.1| DNA topoisomerase III alpha [Leishmania donovani]
Length = 947
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/599 (44%), Positives = 358/599 (59%), Gaps = 27/599 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK +A LS R +SR+N +YEF + + ML+TSV GHLME
Sbjct: 5 LNVAEKPSVAKEMAQSLSGG-SYRTVPSQSRFNPVYEFKFEGKT----MLVTSVAGHLME 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F + + L+ AP+ K+V D + +KK LE A R LVLWLDCDREGEN
Sbjct: 60 DQFPPNTKNRSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADALVLWLDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V ++ + ++RA FSAL R++ AV NL P++ +DAV+ARQE+DLRIG
Sbjct: 120 ICFEVMQVVQSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+FTR+QT+ + H+ + VLS+GPCQFPTLGFVV RYW+ QA ++F+T+
Sbjct: 180 AAFTRYQTVKFR--HLFAAIPG---VLSFGPCQFPTLGFVVRRYWQQQALSRKDFFTLQL 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT-----VTKVRQQEKLKYPPYPL 305
H G F RG ++D +A +IYE +Q A +T V+Q+ + PP PL
Sbjct: 235 QH----GDTKFHSSRGSMYDQVAATLIYEDMLQAAAAEGHKGRITNVQQRPSHRRPPVPL 290
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGH 364
+T+ ++K A+ + R+ SE M +AE LYQ G ISYPRTETDS++ + L +V+ Q +
Sbjct: 291 ATVVMQKLAATHLRIPSERCMTLAESLYQEGLISYPRTETDSYTFQESELLELVRVQTAN 350
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY-KLYELVVR 423
D YA +L A R P GGHDDKAHPPIHPTK + +QD +LY L+VR
Sbjct: 351 ADVAEYATAMLADIATRVRPPLRGGHDDKAHPPIHPTKAWNA----TQDERGRLYNLIVR 406
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HFLA +S AV A T V GE+FST G IL + +LD++ +E W IP Y G
Sbjct: 407 HFLASLSPDAVAATTQVSAEFGGELFSTGGTTILQRGWLDIFPYERWNSTCIPNYQIGDT 466
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
F PT + L+ G T PP L+E L+S MD GIGTDAT+ HIK +LDR Y +K
Sbjct: 467 FQPTAVPLNKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDREY-VKREGQSL 525
Query: 544 APTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G AL Y+ +G L +P LR+ ME M +++ G +K V+A +Q + F
Sbjct: 526 VPTTLGIALASAYESLGLASLLQPQLRAQMELAMGDIANGAATKEQVVAAAVQLYEEIF 584
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ C C++ + L+ +G + C +P C V LP + S + C +C+
Sbjct: 752 ITTCIACRQHELRLRSGANG-FFLSCRGYPSCHLRVSLPAAASVKPSPSQRCPACS---A 807
Query: 695 YLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICG 733
L++F F + PG N+ C+ CD ++ I + G
Sbjct: 808 VLLRFDFSGRQGVPGLNMLDTICV-RCDARIKDYIAVKG 845
>gi|345568376|gb|EGX51270.1| hypothetical protein AOL_s00054g340 [Arthrobotrys oligospora ATCC
24927]
Length = 652
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 252/635 (39%), Positives = 366/635 (57%), Gaps = 49/635 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-RGQPCHMLMTSVTG 66
+ VL VAEK SVAK+VAG LS + + R+ ++Y + Y+F+Y + C + MT+V G
Sbjct: 2 VKVLCVAEKSSVAKAVAGHLSGGR-FQTRQTGNKYIRNYDFDYKFNQWDHCEVTMTAVQG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H E+DF +R+RKW CDP +L+ AP+ K++ +DK+ I +++EAR L +W DCDR
Sbjct: 61 HTEEIDFVDRFRKWSDCDPVELFDAPITKNIEKDKRSIADNIQKEARNATILFIWTDCDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE I EV + N ++ ++RA+FS + + +A N D ++ A AV AR E+D
Sbjct: 121 EGEYIGTEVRTFAKRGNPNIQVKRAQFSNIEKSHVIRAAHNPKDLDERQALAVSARMELD 180
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+ TRFQ++ L+ + D ++SYG CQFPTLGFVVERY ++ E FW
Sbjct: 181 LRIGAALTRFQSLKLQGRW--GLAGD--ALISYGSCQFPTLGFVVERYMRVKNFVPEPFW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
++ H + + T++W R LFD + V+++E C+ P A V V ++ KY P PL+
Sbjct: 237 SLKLMHTRDGTSTTYNWDRSRLFDRMAVVLLFESCMSSPDALVKSVARKPTRKYKPLPLT 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ---IG 363
T+EL+K+ SR+ M+S+ MK AE LY +GFISYPRTETD + NL ++ +Q G
Sbjct: 297 TVELQKQGSRFLGMNSQRVMKAAEGLYTSGFISYPRTETDQYDQAVNLQALIGKQTNDTG 356
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG YA LLD G + P G ++DKAHPPIHP +++ + D K+YE VVR
Sbjct: 357 GWGWGDYATGLLD---GAFEQPRRGKNNDKAHPPIHPVAYAASAALADADQRKVYEFVVR 413
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQ 482
HFLAC S+ A+G T V I+ GE F SG +L +NYLDVY ++ W ++P Y G+
Sbjct: 414 HFLACCSEDAIGETTTVNIDYGGEGFHASGLTVLERNYLDVYPWDRWESSQMLPRYQEGE 473
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI------ 536
+F+P +T+ G T P L+E +L++ MD GIGTDATM +HI+K+ R Y
Sbjct: 474 RFVPNEVTMTDGKTSAPGYLTEPELIALMDANGIGTDATMAEHIEKIQQREYVFCISGGG 533
Query: 537 ----------------------------KDANTRFAPTNIGEALVMGYDDMGYE--LWKP 566
F P+N+G ALV YD + E L +P
Sbjct: 534 KSTGTSRGRGRGRGRGGRDAGGSGRAEGGGGKNVFVPSNLGVALVEAYDTIAAEMSLSRP 593
Query: 567 NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
LR ME +MK + G ++ DV+ CL+Q + +
Sbjct: 594 FLRKEMEVNMKRICKGELAREDVVHQCLEQYRGVY 628
>gi|358378931|gb|EHK16612.1| hypothetical protein TRIVIDRAFT_162256 [Trichoderma virens Gv29-8]
Length = 660
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 261/651 (40%), Positives = 364/651 (55%), Gaps = 65/651 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEKPS++K+VAG LS R+++ K Y F++ Q P + MT VT
Sbjct: 1 MKVLCVAEKPSISKAVAGHLSGG-SFSTHNTRNKFIKNYSFDFDFGQQWGPSSVTMTCVT 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL ++F Y+ W P L+ AP+ V DKKDI K + ++A+ + LV+W DCD
Sbjct: 60 GHLTNVEFTSEYKNWSHPPPESLFTAPI---VTSDKKDIAKNIADQAKYARLLVIWTDCD 116
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E+++ + N + ++RA+FS + + A + L++ ++ +AV AR E+
Sbjct: 117 REGEHIGQEIVDAAKKGNAGIQVKRAKFSNVERAHVLSAARRLIELDEKQVNAVAARIEL 176
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T LK H+ D LVLSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 177 DLRIGYAFTRFITNNLK--HLGGPLAD--LVLSYGSCQFPTLGFVVDRYFRVKNFVPEPF 232
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I+ H E FSW R LFD + V++YE C+ A VTKV+++ K+ P PL
Sbjct: 233 WGISLMHNKEGKQVRFSWARNRLFDRMTVVLLYERCLAAKKAKVTKVQEKPTRKFKPLPL 292
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R RMS + M +AE LY GFISYPRTETD F G NL +VQ+Q
Sbjct: 293 TTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLKALVQKQTTDQ 352
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WGP+AQ L++ G ++ P G HDDKAHPPIHP + + + D +LYE V R F
Sbjct: 353 RWGPFAQGLVN---GGFQQPREGKHDDKAHPPIHPIAHVA-PTTLTYDEGRLYEYVTRRF 408
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LAC ++ A G T +++ E FST G ++L +NYLDVY +E+W +P + G+QF
Sbjct: 409 LACCAEDAKGMATDIDVQFGDEHFSTRGVIVLERNYLDVYIYENWTDTTELPRFTVGEQF 468
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ DR Y
Sbjct: 469 EPTEAMMTEGKTSPPNYLTEADLIALMDANGIGTDATMAEHIQKIQDREYVATTTRGGTA 528
Query: 537 ----KDANTRFAP------------------------------------TNIGEALVMGY 556
D AP T +G AL++G+
Sbjct: 529 ATEGNDDEPEEAPATRGGRGRGRGGRGRGGGGSGSARGGRGSGLKVFVPTQLGVALILGF 588
Query: 557 DDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
D M +E L KP LR ME MK + GN ++ VL + Q + FL ++
Sbjct: 589 DRMSFETSLGKPFLRKEMELQMKAICQGNTTRRAVLDQSIAQYRQVFLQSQ 639
>gi|157877136|ref|XP_001686899.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68129974|emb|CAJ09282.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 947
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/599 (44%), Positives = 356/599 (59%), Gaps = 27/599 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK +A LS R +SR+N +YEF + + ML+TSV GHLME
Sbjct: 5 LNVAEKPSVAKEMAQSLSGGN-CRTVPSQSRFNPVYEFKFEGKT----MLVTSVAGHLME 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F + W + L+ AP+ K+V D + +KK LE A R LVLWLDCDREGEN
Sbjct: 60 DQFPPNTKNWSTYPFQGLFSAPITKYVRADLEPVKKNLEALAGRADTLVLWLDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V ++ + ++RA FSAL R++ AV NL P++ +DAV+ARQE+DLRIG
Sbjct: 120 ICFEVMQVVQSKRPQVQVKRAHFSALTARDLLNAVHNLKLPDKRLSDAVEARQEMDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+FTR+QT+ + H+ + VLS+GPCQFPTLGFVV RYW+ Q E+F+T+
Sbjct: 180 AAFTRYQTVKFR--HLFAAIPG---VLSFGPCQFPTLGFVVRRYWQQQGFVPEDFFTLQL 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT-----VTKVRQQEKLKYPPYPL 305
H G F RG ++D +A +IYE + A +T V+Q+ + PP PL
Sbjct: 235 QH----GDTKFHSSRGSMYDQVAATLIYEDMLLAAAAEGHKGRITNVQQRPSHRRPPVPL 290
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGH 364
+T+ ++K A+ + R+ SE M +AE LYQ G ISYPRTETDS++ + L +V+ QI +
Sbjct: 291 ATVVMQKLAATHLRIPSERCMALAESLYQEGLISYPRTETDSYTFQESELLELVRVQISN 350
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY-KLYELVVR 423
D YA +L A R P GG DDKAHPPIHPTK + +QD +LY L+VR
Sbjct: 351 ADVAEYATAMLADIATRVRPPLRGGRDDKAHPPIHPTKAWNA----TQDERGRLYNLIVR 406
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HFLA +S AV A T V GE+FST G IL + +LD++ +E W IP Y G
Sbjct: 407 HFLASLSPDAVAATTQVSAEFGGELFSTGGTTILQRGWLDIFPYERWNSTCIPNYQIGDA 466
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
F PT + L G T PP L+E L+S MD GIGTDAT+ HIK +LDR Y +K
Sbjct: 467 FQPTAVPLKKGCTSAPPHLTETHLISLMDSNGIGTDATIAQHIKTVLDREY-VKREGQSL 525
Query: 544 APTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G AL Y+ +G L +P LR+ ME M +++ G +K V+A +Q + F
Sbjct: 526 VPTTLGIALASAYESLGLASLLQPQLRAQMELAMGDIANGAATKEQVVAAAVQLYEEIF 584
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ C C++ + L+ +G + C +P C+ V LP + S + C +C+
Sbjct: 752 ITTCIACRQHELRLRSGANG-FFLSCRGYPSCQLRVSLPAAASVKPSPSQRCPACS---A 807
Query: 695 YLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICG 733
L+ F F + PG N+ C+ CD ++ I + G
Sbjct: 808 VLLTFDFSGRQGVPGLNMLDTICV-RCDARIKDYIAVKG 845
>gi|390601900|gb|EIN11293.1| prokaryotic type I DNA topoisomerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 708
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/623 (43%), Positives = 381/623 (61%), Gaps = 29/623 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+++L VAEKPS+++S+A ILS + R R+++ K Y+F+Y M MT V+GH
Sbjct: 1 MHILCVAEKPSMSRSLAVILSGGR-YTTRATRNKFIKNYDFDYPQAN--ATMTMTCVSGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LME DF Y W SC+P L+ APV+ + I L EARR Q L++W DCDRE
Sbjct: 58 LMEHDFPPDY-GWRSCNPFALFDAPVQTKASD--ASIVSNLSAEARRAQQLMIWTDCDRE 114
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I EV VC N +V++RARFSA+I ++IH A Q+ V+ +Q ADAV+AR +DL
Sbjct: 115 GEHIGSEVAAVCVKANPRIVVKRARFSAVIAQQIHNAAQHPVELDQAQADAVEARIILDL 174
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGASFTR QT L+ S + ++ V SYGPCQFPTLGFVV RY +++A E FW
Sbjct: 175 RIGASFTRMQTFALQR----SFAEIKDTV-SYGPCQFPTLGFVVARYKQVKAFVPETFWY 229
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I + + E F+W RGH+FDY A+ +YE + + ATVTKV ++ K+ P PL+T
Sbjct: 230 IYFALRREGDEIQFTWKRGHIFDYDFALTLYEGVLTDRLATVTKVTKKATKKWKPLPLTT 289
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL+K SR RM+ + + +AE LYQ GF+SYPRTETD F + ++Q+Q P W
Sbjct: 290 VELQKAGSRLLRMAPKKVLDIAEKLYQQGFLSYPRTETDQFDRQFDFMSLIQKQTVDPAW 349
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G +A +L G + P G HDDKAHPPIHPT ++ + D K+YE V R FLA
Sbjct: 350 GQFATQL---QGGGFATPRRGKHDDKAHPPIHPTAHAAN---LAGDEKKVYEFVTRRFLA 403
Query: 428 CVSQPAVGAETIVEINIAGEVFS-------TSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
C S+ A G +T V++ GE FS T+G V+ +NYL VY ++ W G +P +
Sbjct: 404 CCSKDAEGWQTTVDVEYGGEQFSATGARIATAGLVVTERNYLLVYPYDKWTGKELPEFRE 463
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--D 538
G+QF P+ L G T P L+EADL+ MDK GIGTDAT+ +HI K+++R Y ++ +
Sbjct: 464 GEQFQPSVCELRDGETSKPHYLTEADLVGLMDKNGIGTDATIAEHIHKVIEREYVVERME 523
Query: 539 ANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+T++ P+ +G LV GY +G+E L KP LR E +M +V K+K D+LA ++
Sbjct: 524 GSTKYLLPSTLGLGLVEGYSQIGFERSLDKPQLRRETERNMVQVCERRKTKQDMLAENIE 583
Query: 596 QMKACFLDARLKKVKLLEAMGIF 618
Q K F+ A+ ++++ ++
Sbjct: 584 QYKDMFIRAKRDFNRVMDVRTLY 606
>gi|296416297|ref|XP_002837817.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633700|emb|CAZ82008.1| unnamed protein product [Tuber melanosporum]
Length = 616
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 256/609 (42%), Positives = 369/609 (60%), Gaps = 26/609 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP----CHMLMTSV 64
VL VAEKPS+AK+VAG LS R ++Y K Y+FNY R P C + MTSV
Sbjct: 3 KVLCVAEKPSIAKAVAGHLSGGVIRNTRNTGNKYIKNYDFNY--RFPPPWGECSVTMTSV 60
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GH + DF + +R+W C P+ L+ A ++ V + K++ + EAR Q L +W DC
Sbjct: 61 VGHTVSWDFADEFRRWKDCQPSALFDAATKQFVSPENKEVAANISSEARNAQILYIWTDC 120
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQN--LVDPNQWFADAVDAR 182
DREGE I EV+++ N + ++RA+FS + I A Q+ ++D Q A AV AR
Sbjct: 121 DREGEYIGTEVMDLAMKSNPRVEVKRAKFSNIERAHILHAAQHPGVLDERQ--AAAVRAR 178
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTR+QTMLL+ +V V+SYG CQFPTLGFVV+RY ++
Sbjct: 179 IELDLRIGAAFTRWQTMLLQ-----TVRGLDEQVVSYGSCQFPTLGFVVDRYKRVKNFVP 233
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E FW+I HK ++ FSW RG LFD + +++YE C+ A V V ++ K+ P
Sbjct: 234 EPFWSIRVIHKRDDINVGFSWDRGSLFDRMAVMVMYEKCLAAKVAKVVSVVKKPTSKWKP 293
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+K+ SR+ +SS+ M +AE LY GFISYPRTETD F G +L +V +Q
Sbjct: 294 LPLTTVELQKQGSRFLGLSSQLVMNIAEKLYTQGFISYPRTETDQFDRGMDLRALVGKQT 353
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG +AQ L++ G + P +G H+DKAHPPIHP + + + + + D ++YE VV
Sbjct: 354 QSHAWGQFAQGLME---GGFSQPKNGTHNDKAHPPIHPVAYVAPD-KLNADEKRVYEFVV 409
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S+ A G T +++ E F T+G V+L +NYL+VY ++ W +P + G
Sbjct: 410 RRFLACCSKDARGETTTIKLQYGEEGFHTTGLVVLERNYLEVYVYDKWTSSQELPVFTPG 469
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ F PT T+ G T PP L+E +L++ MD GIGTDATM +HI K+++R Y
Sbjct: 470 EIFNPTEATMTEGKTCPPGFLTEPELIALMDANGIGTDATMAEHIAKIIERKYVFARPMG 529
Query: 542 R----FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
R F+P+N+G ALV GYD++G++ L KP LR ME MK++ G ++ DV+ + ++
Sbjct: 530 RSGGEFSPSNLGIALVEGYDNIGFDMSLSKPFLRKEMEEKMKKICEGVMTRLDVVNSSIE 589
Query: 596 QMKACFLDA 604
Q + F+ A
Sbjct: 590 QYREMFMKA 598
>gi|302916113|ref|XP_003051867.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732806|gb|EEU46154.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 653
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 263/650 (40%), Positives = 361/650 (55%), Gaps = 62/650 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI--RGQPCHMLMTSVT 65
+ VL VAEKPS++K+VAGILS R+++ K Y F++ R C + MT VT
Sbjct: 1 MRVLCVAEKPSISKAVAGILSGGSHT-THNTRNKFIKNYSFDFDFGQRWGKCSVTMTCVT 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL +DF Y+ W P L++AP+ V DKK I + +E +A+ + LV+W DCD
Sbjct: 60 GHLTNVDFSPEYKNWSHPPPEALFNAPI---VTSDKKSIAQNIESQAKFARLLVIWTDCD 116
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E++E R + ++RARFS + + A ++L + ++ +AV R E+
Sbjct: 117 REGEHIGHEIVEAARKGKPDIEVKRARFSNVERAHVLSAARSLAELDEKQVNAVATRIEL 176
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T L+ L LSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 177 DLRIGYAFTRFITNNLRPLG----GPMEKLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPF 232
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I H E FSW+R LFD S VI+YE C+ TATVTKV+++ K+ P PL
Sbjct: 233 WSIKVMHNREGKKVEFSWLRNRLFDRMSTVILYERCLAAKTATVTKVQEKPTRKFKPLPL 292
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R RMS + M +AE LY GFISYPRTETD F G NL +VQ+Q
Sbjct: 293 TTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDRGMNLRALVQKQTPDE 352
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +AQ L A G ++ P G HDDKAHPPIHP +++ S S D +LYE VVR F
Sbjct: 353 RWGTFAQGL---ANGAFQQPREGRHDDKAHPPIHPITYAA-PSVLSFDEGRLYEYVVRRF 408
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LAC S A G T +E+ E F+ G ++L +NYL+V+ +E W +P + G++F
Sbjct: 409 LACCSDDAKGMATDIELEYGEERFNAHGVIVLERNYLEVFIYEKWNNSAELPKFTEGERF 468
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK------- 537
PT + G T P L+EADL++ MD GIGTDATM +HI+K+ DR Y +
Sbjct: 469 QPTEAMVTEGKTTAPNYLTEADLIALMDANGIGTDATMAEHIQKIQDREYVVTIERAGQA 528
Query: 538 -------DANTR-------------------------------FAPTNIGEALVMGYDDM 559
DA F PT +G AL++G+D M
Sbjct: 529 PADDEEPDAAPAARGGRGRGRGGRGRGGRGGAASSGGRRGIKVFVPTQLGVALILGFDRM 588
Query: 560 GYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+E L KP LR ME MK + G S+ VL + Q + F+ ++ K
Sbjct: 589 NFETSLGKPFLRKEMELKMKAICEGRTSREVVLRESIAQYRHVFMQSQEK 638
>gi|367050678|ref|XP_003655718.1| hypothetical protein THITE_2119715 [Thielavia terrestris NRRL 8126]
gi|347002982|gb|AEO69382.1| hypothetical protein THITE_2119715 [Thielavia terrestris NRRL 8126]
Length = 667
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/656 (40%), Positives = 367/656 (55%), Gaps = 69/656 (10%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVT 65
++L VAEKPS++K+VAG LS + R Y K Y F++ G P C + MT+V
Sbjct: 3 HILCVAEKPSISKAVAGHLSGGH-YQTTNTRDAYIKNYTFDFDF-GPPWGRCSVTMTAVK 60
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL L+F +++W P L+ APV+ +P D K I K +E++ARR LV+W DCD
Sbjct: 61 GHLTALEFPPDFKQWEYPPPDRLFDAPVQTVIPTDNKHIAKNIEDQARRASALVIWTDCD 120
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E+ + R N + ++RARFS + I A + L+ ++ DAV AR E+
Sbjct: 121 REGEHIGSEIRDAARKGNGQIQIKRARFSNVERAHILSAARRLIALDEKQVDAVSARIEL 180
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T+ L+ NL +SYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 181 DLRIGYAFTRFLTLNLRPLGGPM----SNLTISYGSCQFPTLGFVVDRYFRVKNFVPEAF 236
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I H+ + F+W R LFD + VI+YE C+ TA VTKV+++ K+ P PL
Sbjct: 237 WGIKMMHERDGIKVNFNWARHRLFDRMAVVILYERCLAARTAKVTKVQERPTKKWKPLPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R+ RMS + M VAE LY GFISYPRTETD F G +L +V++QI
Sbjct: 297 TTVELQKMATRFLRMSGQQAMTVAEKLYNKGFISYPRTETDRFDKGMDLRALVRKQIQDN 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +AQ L+D G ++ P G HDDKAHPPIHP +++ + ++YEL+ R F
Sbjct: 357 RWGQFAQNLVD---GGFQQPREGRHDDKAHPPIHPITYAA-PTVLDDGERRVYELITRRF 412
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LAC SQ A G T VE+ E F+ G ++LA+NYLDVY +E+W G +P + G++F
Sbjct: 413 LACCSQDAQGMATDVEVLYGDETFAAHGVIVLARNYLDVYPYENWTGTAELPKFTLGERF 472
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY---------- 534
PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ +R Y
Sbjct: 473 EPTEAMVTEGKTSPPGYLTEADLIALMDANGIGTDATMAEHIEKIQERQYVRTVERGGNP 532
Query: 535 AIKDANT-------------------------------------------RFAPTNIGEA 551
A DAN F PT++G A
Sbjct: 533 AGGDANDDEDDNTEAPAARGGRGRGRGRGRGGRGGGRGGRGGGRGGGGVREFIPTSLGVA 592
Query: 552 LVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
L+ G+D M +E L KP LR ME MK + G +K VL L + + + +R
Sbjct: 593 LIEGFDRMRFETSLGKPFLRKEMELKMKAICEGRTTKQVVLHESLSEYRRVYDQSR 648
>gi|346971576|gb|EGY15028.1| DNA topoisomerase [Verticillium dahliae VdLs.17]
Length = 760
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/532 (45%), Positives = 328/532 (61%), Gaps = 14/532 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSV 64
+ VL VAEKPS++K+V LS Q + R R+ K Y F+++ G P C + MT+V
Sbjct: 1 MRVLCVAEKPSISKAVTDHLSGGQS-QTRNTNDRFTKNYCFSFNF-GPPWNQCDVTMTAV 58
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL+ ++F + W P L+HAP+ V DKK + +E++AR C L++W DC
Sbjct: 59 RGHLLGMEFTPANKNWQYPPPDSLFHAPIVTTVASDKKAVADNIEQQARYCDLLIIWTDC 118
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENI E++ + + + ++RA+FS + + QA +NLVD ++ ADAVDAR E
Sbjct: 119 DREGENIGREIVGLAKKGKPTIRVKRAKFSNIERTHVIQAAKNLVDLDERQADAVDARME 178
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRF T L+N V +++SYG CQFPTLGFVV+RY+ ++ E+
Sbjct: 179 LDLRIGYAFTRFLTTNLRNLGGPLV----EMIISYGSCQFPTLGFVVDRYFRVKNFVPEQ 234
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW+I+ +H E F+W R LFD + I+YE C+Q TA VTKV+++ K+ P P
Sbjct: 235 FWSIHVNHTQEGKKVKFAWSRNRLFDRMAVTILYERCIQARTAKVTKVQEKPTRKWKPLP 294
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL+K A+R RMS + M VAEDLY GFISYPRTETD F NL +VQ+Q
Sbjct: 295 LTTVELQKAATRLLRMSGQQAMSVAEDLYNKGFISYPRTETDRFDKEINLRNLVQKQTQS 354
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
WG YAQ LL +G + P G HDDKAHPPIHP F+S S + D +LYE +VR
Sbjct: 355 DAWGQYAQDLL---SGSFSQPRQGRHDDKAHPPIHPVTFAS-PSVLTHDAKRLYEYIVRR 410
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQ 483
FLAC S A G T VEI E F G +L +NYLDV+ +E W +P + G+
Sbjct: 411 FLACCSDDAKGVSTNVEILYGEESFHAHGLHVLERNYLDVFVYEKWNDTTELPKFRVGEV 470
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
F PT L G T PP L+EADL++ MD GIGTDATM +HI+K+ DR YA
Sbjct: 471 FQPTEAMLTDGKTSPPSYLTEADLIALMDINGIGTDATMAEHIQKIQDREYA 522
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL++G+D M E L KP LR ME+ MK + G SKA+VL + Q +
Sbjct: 582 FVPTKLGMALIVGFDRMELETSLGKPFLRKEMEAQMKAICEGRASKAEVLQQNIGQYRQV 641
Query: 601 F 601
F
Sbjct: 642 F 642
>gi|19113553|ref|NP_596761.1| DNA topoisomerase III [Schizosaccharomyces pombe 972h-]
gi|6686026|sp|O60126.2|TOP3_SCHPO RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|4388617|emb|CAA19038.1| DNA topoisomerase III [Schizosaccharomyces pombe]
gi|5836087|gb|AAD22485.2| topoisomerase 3 [Schizosaccharomyces pombe]
Length = 622
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 254/605 (41%), Positives = 363/605 (60%), Gaps = 20/605 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEK S+AKSVA IL +R R+ RS+Y K Y+F+++ G + MTSV+
Sbjct: 1 MRVLCVAEKNSIAKSVASILGGGH-VRRRDTRSKYVKNYDFSFNFGGNVGSSDVTMTSVS 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL E F Y W S L+ A + V ++ + + +++EAR Q+L +W DCD
Sbjct: 60 GHLTEASFPSEYSSWSSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E+ V RA N + + RA F+ L I A + D ++ ADAVDAR E+
Sbjct: 120 REGEHIGVEISNVARASNPSIQVIRADFNNLERSHIISAAKRPRDVSKNAADAVDARIEL 179
Query: 186 DLRIGASFTRFQTMLL-KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
D R+GA FTR QT+ L K+F I +N ++SYGPCQFPTLGFVV+R+ ++ E
Sbjct: 180 DFRLGAIFTRLQTIQLQKSFDIL-----QNKIISYGPCQFPTLGFVVDRWQRVEDFVPET 234
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W + K + T F+W R +FD + +II E C++ TA V + Q+ K KY P P
Sbjct: 235 YWHLRFVDKRQGKTIQFNWERAKVFDRLTTMIILENCLECKTAKVVNITQKPKTKYKPLP 294
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
LST+EL K ++ R+S++ T+++AE+LY GF+SYPRTETD F S NLH I+Q+ G
Sbjct: 295 LSTVELTKLGPKHLRISAKKTLELAENLYTNGFVSYPRTETDQFDSSMNLHAIIQKLTGA 354
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
+W YA+ LL AG +R P G H+D+AHPPIHP + + SQDH+K+YEL+ R
Sbjct: 355 QEWDSYAEGLL---AGDYRPPRKGKHNDRAHPPIHPVQMVHRSALPSQDHWKVYELITRR 411
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQ 483
FLAC S A GAET+V++ + E+FS G ++ KNYL+VY +E W +P Y ++
Sbjct: 412 FLACCSDNAKGAETLVQVKMEEELFSKKGLLVTEKNYLEVYPYEKWESSDQLPEYRLHEE 471
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN--- 540
F P L + T P ++E +L++ MD GIGTDATM +HI+K+ +R Y IK
Sbjct: 472 FQPHILDMMDSSTSSPSYITEPELIALMDANGIGTDATMAEHIEKVQEREYVIKRKKRGQ 531
Query: 541 --TRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
T F P+++G AL GYD++G E L KP LR ME +K + G ++ ++ L Q
Sbjct: 532 GVTEFVPSSLGVALAKGYDEIGLEWSLTKPFLRKEMEVQLKNIENGQLNRNVLVHMILTQ 591
Query: 597 MKACF 601
+ F
Sbjct: 592 FRDVF 596
>gi|409045159|gb|EKM54640.1| hypothetical protein PHACADRAFT_97897 [Phanerochaete carnosa
HHB-10118-sp]
Length = 705
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/620 (39%), Positives = 369/620 (59%), Gaps = 31/620 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A+S+ ILS Q R ++Y + Y+F+Y +TSVTGH
Sbjct: 1 MRVLCVAEKPSIARSITQILSGGQ-FNTRPSPNKYIRNYDFDYPQTN--SQFTVTSVTGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L++ DFD Y W SC+P L+ AP+ + + + I + LE EARR Q L++W DCDRE
Sbjct: 58 LLDHDFDSAYSNWQSCEPFVLFDAPIISRIKKGSETIARNLENEARRAQTLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI EV VCR V +++RRARFSA+I ++IH A Q+ V+ + ++AV+AR +DL
Sbjct: 118 GENIGAEVAGVCRKVKTAIIVRRARFSAIIAQQIHNAAQHPVNLDMAQSNAVEARTLLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR Q++ L+ D + + GPCQFPTLGFVV RY ++++ SE FW
Sbjct: 178 RIGATFTRLQSLQLQQRFQQLKGDVISYGSTIGPCQFPTLGFVVSRYNQVKSFVSETFWH 237
Query: 248 INCS------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
I + EE F+W RGHLF+ A+ IYE + PTA VT+V ++ K+
Sbjct: 238 IYLALTRIDETTGEESETPFTWRRGHLFELEVALAIYEHVLDNPTANVTRVTRKNTKKWK 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T++L+K SR ++S + + +AE LYQ GF+SYPRTETD F + ++Q+Q
Sbjct: 298 PLPLTTVDLQKAGSRLLKISPKKVLDIAEHLYQQGFLSYPRTETDQFDPQFDFMTLIQKQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
I P WG +A SG +DKAHPPIHPT + + D ++YE +
Sbjct: 358 IVDPAWGQFA--------------SSGKKNDKAHPPIHPTAHAGN---LAGDEKRVYEYI 400
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
R FLA S+ A+G ET V++ GE F +G + +NYLDV+ ++ W +P +
Sbjct: 401 TRRFLASCSKDALGWETTVDVECGGEEFYATGLTVRERNYLDVFPYDKWSDKELPNFAEN 460
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA---IKD 538
++F+P+ L G T P LL+EADL++ MDK GIGTDAT+ HI+ ++DR Y ++
Sbjct: 461 EEFMPSICELKEGQTSRPSLLTEADLVALMDKNGIGTDATIAQHIQTIIDRKYVMERMQG 520
Query: 539 ANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
A P+ +G LV GY+++G++ L +P +R E M ++ G+K+K ++L ++
Sbjct: 521 ATKYLVPSTLGIGLVEGYNEIGFDRSLSRPEMRRETERQMVQICEGHKTKTEMLTENIEL 580
Query: 597 MKACFLDARLKKVKLLEAMG 616
K ++ + + +++ ++G
Sbjct: 581 YKEMYIRIKREMNRVITSVG 600
>gi|378729744|gb|EHY56203.1| DNA topoisomerase III [Exophiala dermatitidis NIH/UT8656]
Length = 625
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 258/620 (41%), Positives = 363/620 (58%), Gaps = 22/620 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGR-SRYNKIYEFNYSIRG-QPCHMLMTSVTG 66
+L VAEKP++AK+VA L+ Q L R R S+Y K YEF ++ R C + MTSV G
Sbjct: 5 KILCVAEKPAIAKAVAQHLAGGQ-LNTRPIRGSQYVKNYEFEFNFREWGNCSVTMTSVLG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL LDFD RY+ W SC P+ L+ A + +DKK I ++++AR + L +W DCDR
Sbjct: 64 HLTALDFDPRYKSWKSCPPSQLFDATTLVTIDKDKKPIADNIQQQARYARILFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV + + N +++++RA+FS + QA + +D ++ AV AR E+D
Sbjct: 124 EGEHIGGEVRDQAKKGNPNILVKRAKFSNTERAHVIQAAHSPIDMDERQVSAVAARIELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGASFTR Q++ L+ + R+ ++SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 184 LRIGASFTRLQSLELQCLS----ENLRDKMISYGSCQFPTLGFVVDRYNRVRNFKPELFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I F+W R HLFD I++E C+ A VTKV+ + K+ P PL+
Sbjct: 240 SIKLVQVRAGIKVNFNWRRVHLFDRAVVTILFEACLDAKYARVTKVQTKPTSKWRPLPLT 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K SR+ M+S M VAE LY GFISYPRTETD F G I++ Q
Sbjct: 300 TVELQKLGSRFLHMTSHQVMSVAEKLYTKGFISYPRTETDQFPQGFGFQPIIERQTRDDR 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG YAQ LLD G +R P SG H+D+AHPPIHP +++ S Q K+YE V R FL
Sbjct: 360 WGRYAQGLLD---GGFRTPRSGSHNDQAHPPIHPVNYAA-PSALDQHEKKVYEFVTRRFL 415
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFI 485
AC S+ A G T +E+ E+F T G ++ +NYLDVY ++ W +P + G+ F
Sbjct: 416 ACCSEDAKGEATDIELLWGTEMFHTHGLLVRERNYLDVYVYDKWESSQQLPIFTVGETFE 475
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--------K 537
PT + G T P L+E +L++ MD GIGTDATM +HI K+ DR Y +
Sbjct: 476 PTEANMAEGKTTAPGYLTEPELITLMDANGIGTDATMAEHIAKIKDRSYVDTRPRSGGGR 535
Query: 538 DANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
++ F PT +G AL+ GYD++G + + KP LR ME MK +S G KS+ +V+ L
Sbjct: 536 NSVQEFIPTTLGVALIEGYDNVGLDVSVSKPFLRKEMELKMKAISEGRKSRTEVVQESLD 595
Query: 596 QMKACFLDARLKKVKLLEAM 615
Q + F+ + + L EA+
Sbjct: 596 QYREVFIKTQREINVLKEAV 615
>gi|302687094|ref|XP_003033227.1| hypothetical protein SCHCODRAFT_54192 [Schizophyllum commune H4-8]
gi|300106921|gb|EFI98324.1| hypothetical protein SCHCODRAFT_54192 [Schizophyllum commune H4-8]
Length = 611
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 251/606 (41%), Positives = 373/606 (61%), Gaps = 22/606 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +L VAEKPS++KS++ ILS + L R + Y K Y+F+Y+ R M +T V GH
Sbjct: 1 MKILCVAEKPSISKSISQILSGGR-LSTRSTQCNYIKNYDFDYAPRN--ARMTVTCVAGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L + DF + +RKWHSC P L+ A V +P DKK I+K L EAR +++W DCDRE
Sbjct: 58 LTQQDFYDTHRKWHSCAPIALFEADVNTFIPPDKKAIEKNLLAEARSADIVMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I +EV+ VC+ ++ + RA FSA+I R+IH A QN + +Q DAV AR +DL
Sbjct: 118 GEYIGWEVVSVCKRAKRNIRVERAHFSAIIARDIHNAAQNPQELDQRQVDAVAARTVLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
+IGA+FTR QTM L+ HI V D++ V+SYG CQFPTLGFVV R+ ++++ E+F
Sbjct: 178 KIGAAFTRMQTMGLQA-HI-PVIGDKSHVISYGSCQFPTLGFVVNRFKQVKSFVPEDFSY 235
Query: 248 INCSHKS--EEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
I+ + K+ F+W RG +FD AV +Y++ +++ TVTKV ++ K+ P PL
Sbjct: 236 IHLTIKAPGSNDETPFTWQRGRIFDRDVAVALYQLVMRDTLTTVTKVVKKTTKKWKPLPL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K SR R++ + + +AE LYQ GF+SYPRTETD F + + ++++Q
Sbjct: 296 TTVELQKAGSRLLRLAPKRVLDIAEKLYQQGFVSYPRTETDQFPNNMDFKSLIEKQKADA 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG +A +L D G + P G H+D AHPPIHPT + ++ + D ++YE + R F
Sbjct: 356 TWGAFATKLNDQ--GGFERPRKGKHNDNAHPPIHPTAHA---AQLAGDEKRVYEFIARRF 410
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC S+ A G +T++++ GE F T+G ++L +NYL+VY ++ W G +P + G +F
Sbjct: 411 LACCSKDAEGFQTVIDVLCGGEAFHTTGLIVLERNYLEVYVYDKWNGHAVPEFQQGDEFQ 470
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD--ANTRF 543
P + L +G T P L+EADL++ MDK GIGTDAT+ HI+ +++R Y I++ T++
Sbjct: 471 PARVELLTGTTTGPNYLTEADLVTLMDKNGIGTDATIAQHIETVINREYVIEEMAGQTKY 530
Query: 544 -APTNIGEALVMGYDDMGYE--LWKPNLRSMM-----ESDMKEVSVGNKSKADVLANCLQ 595
P+ +G LV GYD +G E + P L M E MK+V G K+K + + LQ
Sbjct: 531 LKPSTLGIGLVEGYDQIGLENNMLSPFLTQHMSLLQTERSMKQVCNGTKTKEEFIEEDLQ 590
Query: 596 QMKACF 601
K F
Sbjct: 591 MYKEMF 596
>gi|189188224|ref|XP_001930451.1| DNA topoisomerase 3-beta [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972057|gb|EDU39556.1| DNA topoisomerase 3-beta [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 665
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 260/645 (40%), Positives = 363/645 (56%), Gaps = 61/645 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
VL VAEKPS+AK+VA L G +Y K Y+F++ R P C + T V G
Sbjct: 4 VLCVAEKPSIAKAVANHLGGQARAENVRG-IQYVKNYKFDF--RFNPWGNCSVTFTCVAG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H++ DF+++++KWHSC P+ L+ AP+ + +DKK + +E +AR L +W DCDR
Sbjct: 61 HIVHRDFNDQFKKWHSCPPSALFDAPIVSSIAQDKKVVASNIEAQARYASILYIWTDCDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I E+ ++ N ++ + RARFS + + QA QN + ++ A+AV AR E+D
Sbjct: 121 EGEHIGSEIRDIALKANPNMQVWRARFSNIERAHVIQASQNPIRLDEAQAEAVSARMELD 180
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+GA+FTR QT L+N I ++R V+SYG CQFPTLGFVV+RY ++ E FW
Sbjct: 181 LRLGAAFTRMQTFALQNV-IPQQGEERGKVISYGSCQFPTLGFVVDRYLRVRNFVPEPFW 239
Query: 247 TINCSHKSE-EGT-----ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
I H E E T FSW RGHLFD + II+E C+ TA V K+ ++ K+
Sbjct: 240 YIKVGHTKELEQTKDKVDVRFSWRRGHLFDRMAVTIIFEKCLLAKTAKVVKMSKKPTSKW 299
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T+EL+K SR+ RM+S+ MKVAE+LY G+ISYPRTETD F +L +V
Sbjct: 300 KPLPLTTVELQKMGSRFLRMTSQDVMKVAEELYTKGWISYPRTETDQFDRAMDLRTLVGR 359
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q WGP+AQ L++ G + P G ++DKAHPPIHP + + ++ + +YE
Sbjct: 360 QTQDGRWGPFAQNLMN---GGFHQPRQGRNNDKAHPPIHPVNYVA-PTQLNDRERTVYEF 415
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYV 479
VVR FLAC S+ AVG T +EI+ GE F G ++A+NYLDVY ++ W V+P Y
Sbjct: 416 VVRRFLACCSEDAVGEATDIEIDYGGEFFHAHGLTVIARNYLDVYPYDKWESSQVLPKYA 475
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ F PT + G T P L+E +L+S MD GIGTDATM +HI + R Y I A
Sbjct: 476 VGETFEPTEANMQDGQTCAPSYLTEPELISLMDANGIGTDATMAEHIATIQKREYVIARA 535
Query: 540 NT-----------------------------------------RFAPTNIGEALVMGYDD 558
F PT +G AL+ GYD+
Sbjct: 536 KGGGAAVAGTDRGRGRGRGGRGGRGGRGGAAVGQDGGGTSGVQEFIPTTLGVALIEGYDN 595
Query: 559 MGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+G+E L KP LR ME MK + G ++ DV+ L++ +A F
Sbjct: 596 VGFETSLSKPFLRKEMEVQMKAICEGRTTRNDVVQQNLEKYRAVF 640
>gi|223999503|ref|XP_002289424.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
gi|220974632|gb|EED92961.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
Length = 672
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 270/680 (39%), Positives = 392/680 (57%), Gaps = 43/680 (6%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFN---------------YS 51
P VLNVAEKPSVA+++A + + G R R + +I+E + +
Sbjct: 3 PPIVLNVAEKPSVARALAQVFASTPGSRPRPDQRTAAQIFECDNVQFPCLYQQGNGTPAN 62
Query: 52 IRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEE 111
R +P M+ TSV GHL +F + W C P L+ AP+ ED + +++ L +
Sbjct: 63 GRNEPHTMITTSVRGHLASQNFGPSF-GWTRCAPVALFDAPIDTSYSEDMEPLERMLRQL 121
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQN 167
++R L+LWLDCDREGE I+ EV VC N L + RA+FS ++ EI +A++
Sbjct: 122 SQRASALILWLDCDREGEAISDEVRAVCLKGNPRLGTMNRIYRAKFSTVLPGEIERALRT 181
Query: 168 LVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTL 227
L N+ F AV AR E DLR+GA+FTRFQT+ L+ D + V+SYGPCQFPTL
Sbjct: 182 LGRVNENFVAAVQARSEHDLRVGAAFTRFQTLRLQK-KFDGFGE--RGVISYGPCQFPTL 238
Query: 228 GFVVERYWEIQAHESEEFWTINCSHK-SEEGTAT----FSWMRGHLFDYTSAVIIYEMCV 282
GFVVER+ I+ E+FW I + + +E+G+ + +W R L+D + +Y+ C+
Sbjct: 239 GFVVERWARIETFVPEDFWFIEMTIRLNEDGSVSRSIRLNWKRVRLYDRVMTIALYDACL 298
Query: 283 QEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
+ A + + + K K+ P PL+T+EL+KRAS+Y R+ SE M+ AE+LYQ GFISYPR
Sbjct: 299 EAGAAVIVSLTGRPKNKWRPIPLATVELQKRASKYLRIGSEELMQKAEELYQQGFISYPR 358
Query: 343 TETDSFSSGTNLHGIVQE-QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT 401
TET+ F + H ++Q Q ++G YA LL ++ ++NP +G +DD AHPPI P
Sbjct: 359 TETEKFRPEFDHHALIQSFQAVQGEFGNYATSLLSNSN--FQNPRAGQNDDNAHPPITPA 416
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY 461
K ++ K+Y LVV+H+LAC S+ AVG ET + + IA E F G +IL +N+
Sbjct: 417 KAVDPQTIADPIQRKVYTLVVKHYLACCSRDAVGRETELTLKIASEEFVAKGLMILERNW 476
Query: 462 LDVYR-FESW--GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
L++Y+ FE W G +P G + +PTTL ++ G T P +SE +L+S MD+ GIGT
Sbjct: 477 LEIYQPFERWSTGQGELPKVRVGSRIVPTTLVMNEGQTSAPTPISEVELISLMDRNGIGT 536
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
DAT+ HI + +R YA KD N RF PT +G ALV GY+ MGY+L KP+LR ME++
Sbjct: 537 DATIAQHITTICEREYAKKDQNQRFHPTKLGIALVEGYNSMGYQLNKPDLRREMEAECSA 596
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQ-----QAAGE 633
V+ G K+K +L + +M CF A + KL A+ F++ + QA
Sbjct: 597 VAAGRKTKDQILGPVIAKMLHCFRTANAEVEKLDTAVARHFDKLGSNRNNEYSVLQADFS 656
Query: 634 VVRQCGICQESNMVLKKSRD 653
V CG C M LK+ R+
Sbjct: 657 V---CGTCNRM-MTLKEQRN 672
>gi|392593523|gb|EIW82848.1| prokaryotic type I DNA topoisomerase [Coniophora puteana RWD-64-598
SS2]
Length = 717
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 257/620 (41%), Positives = 371/620 (59%), Gaps = 36/620 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+AKSVA ILS + + R+ +Y + Y F+Y +TSV+GH
Sbjct: 1 MEVLCVAEKPSIAKSVANILSGGR-YQTRQTGEKYIRNYIFDYPQTN--SQFTVTSVSGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M DFDE Y+ W S DP L+ PVR +V ++K IK+ L++ AR L++W DCDRE
Sbjct: 58 IMGHDFDEVYKSWRSVDPLQLFTLPVRCNVDKEKVKIKENLQQLARTANTLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +E+++VCR V ++ + RARFSA+I +IH+A Q V+ + A AV+AR +DL
Sbjct: 118 GENIGYEIMQVCREVKANITVNRARFSAIIQNQIHRAAQRPVELDMAQAYAVEARSILDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR Q++ L++ T V+SYGPCQFPTLGFVV RY E +A E FW
Sbjct: 178 RIGAAFTRMQSLTLQS------TVAVEGVVSYGPCQFPTLGFVVARYCEARAFTEEPFWY 231
Query: 248 INCSHKSEEG----TATFSWMRGHLFDYTSAVIIYE--MCVQEPTATVTKVRQQEKLKYP 301
I + G FSW R HLF++ +IYE M + A +TKV ++ KY
Sbjct: 232 ITLLLTRQVGGHPKETAFSWRRNHLFNFDDVFVIYERIMAIDNARARITKVTKKTTKKYK 291
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T+EL+K SR +++ + + VAE LYQ GF+SYPRTETD + + ++++Q
Sbjct: 292 PLPLTTVELQKAGSRLLKLAPKKVLDVAEKLYQDGFLSYPRTETDQYDPQFDFMALIEKQ 351
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
WG +A+ G G H+DKAHPPIHPT ++ + D K+YE +
Sbjct: 352 TADSAWGTFAR-------------GKGKHNDKAHPPIHPTAHAAN---LTGDQKKVYEYI 395
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
R FLA S+ A G ET E++ GE+FS SG +L +NYL+VY ++ W +P +V G
Sbjct: 396 TRRFLASCSKDAEGFETKAEVDYGGELFSASGLSVLRRNYLEVYPYDKWSDKDMPDFVEG 455
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA--IKDA 539
+ F PT+ + G T P LL+EADL++ MDK GIGTDAT+ HI ++ R Y IK+
Sbjct: 456 ETFEPTSCEVKEGKTSAPSLLTEADLVTLMDKNGIGTDATIAQHIDTIVTRKYVTEIKEG 515
Query: 540 NTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
+T++ AP+ +G L+ GY+ +G E L KP LR E + ++ G K+K ++L +
Sbjct: 516 STKYLAPSPLGLGLIGGYNQIGLERSLSKPQLRRETERHLVQICEGTKTKEEMLEQSVAL 575
Query: 597 MKACFLDARLKKVKLLEAMG 616
+ F+ AR + K++ G
Sbjct: 576 YQEMFILARREFNKVITVKG 595
>gi|255943201|ref|XP_002562369.1| Pc18g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587102|emb|CAP94766.1| Pc18g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 628
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 257/622 (41%), Positives = 360/622 (57%), Gaps = 29/622 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+L VAEKP++A++VA LS Q IR ++Y K YEF+++ G C + MTSV
Sbjct: 5 ILCVAEKPAIARAVATHLSGGSFQTHAIRG--NQYVKNYEFDFNFGGAWGTCSVTMTSVV 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL LDFD Y+ W SC P L+ APV++ V +DK I + +A+ + L +W DCD
Sbjct: 63 GHLTGLDFDREYKGWMSCPPGALFEAPVQETVDKDKLPIADNIRNQAKYSKALFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV +A N + ++RA+FS + +A V+ +++ A AV AR E+
Sbjct: 123 REGEHIGSEVRNQAKAGNAQIEVKRAKFSNTESAHVRRAALEPVNLDEYQASAVAARIEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ L+ V + V+SYG CQFPTLGFVV+RY +Q + E F
Sbjct: 183 DLRIGAAFTRLQTLQLQTV----VAALKEKVISYGSCQFPTLGFVVDRYLRVQNFKPETF 238
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I E F W R HLFD ++ E C+ A VTKV Q+ K+ P PL
Sbjct: 239 WGIKVILSREGKKVNFLWKRVHLFDRAVVTMMLERCLLAKQAKVTKVNQKPTSKWRPLPL 298
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ SR+ R+ S+ MKVAE LY GFISYPRTETD F G +L +V++Q
Sbjct: 299 TTVDLQMMGSRFLRLDSQTIMKVAEALYTKGFISYPRTETDQFDKGIDLKKLVEKQYPDN 358
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG YA+ L+D G +R P SG H+DKAHPPIHP + S ++ + + K+YE VVR F
Sbjct: 359 SWGQYARELID---GKFRTPRSGRHNDKAHPPIHPVSWVS-PNQLNANEKKVYEFVVRRF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQF 484
LAC S A G T +EI E F T+G ++L +NYLDVY ++ W +P + G+ F
Sbjct: 415 LACCSDDAKGQSTEIEIQYGDEFFHTNGLIVLERNYLDVYVYDKWESSQQLPNFERGELF 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------K 537
PT + G T PP L+E +L+ MD GIGTDATM +HI K+ +R Y +
Sbjct: 475 EPTEANIFDGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAINQRGGGR 534
Query: 538 DANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
+ F PT +G ALV GYD++ L KP LR ME M E+ G K++ +V+
Sbjct: 535 SSVQEFIPTRLGVALVEGYDNVVEGLPNSVSLSKPFLRKEMELRMVEICSGTKTRQEVVQ 594
Query: 592 NCLQQMKACFLDARLKKVKLLE 613
L + F+ + +++ +L+
Sbjct: 595 QSLDMYREVFIHTQ-RRINMLK 615
>gi|429861174|gb|ELA35874.1| DNA topoisomerase [Colletotrichum gloeosporioides Nara gc5]
Length = 673
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/531 (45%), Positives = 324/531 (61%), Gaps = 14/531 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSV 64
+ VL VAEKPS++K+VAG L+ Q + RS Y K Y FN++ G P C + MT+V
Sbjct: 1 MKVLCVAEKPSISKAVAGHLA-GQNPTVHNTRSTYIKNYGFNFNF-GPPWNACDVTMTAV 58
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL LDF + W P L+ APV VP+DKK + +E +AR CQ LV+W DC
Sbjct: 59 LGHLTALDFTPANKSWQHPPPESLFTAPVVTLVPDDKKTVADNIERQARYCQLLVIWTDC 118
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I E++ R + ++RA FS + I A + L D +Q DAVD R E
Sbjct: 119 DREGEHIGKEIVHAARKGKPDIQVKRATFSNIERAHILSAARRLTDLDQKQVDAVDTRIE 178
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRF T+ L+ + ++ + SYG CQFPTLGFVV+RY+ +Q E+
Sbjct: 179 LDLRIGYAFTRFLTLSLRP--LGGALQEKTI--SYGSCQFPTLGFVVDRYFRVQNFVPEQ 234
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW+I H E A FSW R LFD S VI+YE C++ A VTKV+++ K+ P P
Sbjct: 235 FWSIKVMHNREGKKANFSWSRNRLFDRMSVVILYERCIRAKKAKVTKVQEKATRKWKPLP 294
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL+K A+R RMS + M +AE+LY GFISYPRTETD F G +L +V++Q H
Sbjct: 295 LTTVELQKAATRLLRMSGQQAMTIAENLYNRGFISYPRTETDRFDKGMDLKALVRKQTPH 354
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
WG YA+ LL+ G + P G HDDKAHPPIHP +++ S + +LYE VVR
Sbjct: 355 QRWGEYAEGLLN---GNFSQPREGRHDDKAHPPIHPVTYAA-PSVLKPEEAQLYEYVVRR 410
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQ 483
FLAC S+ A G T +EI E F G +L +NYLDV+ +E W +P Y G+
Sbjct: 411 FLACCSEDAKGMATDIEILYGEETFHARGLRVLERNYLDVFIYEKWNDSAELPHYTQGET 470
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
F+PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ DR Y
Sbjct: 471 FVPTEAMMTDGKTSPPGYLTEADLIALMDANGIGTDATMAEHIQKIQDREY 521
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+MG+D M +E L KP LR ME+ MK + G SK VL L Q +
Sbjct: 576 FIPTQLGVALIMGFDRMEFETSLGKPFLRKEMENKMKAICDGRMSKEAVLRESLGQYRQV 635
Query: 601 FLDARLKKVKLLEAMGI 617
F D++ +++ +L+A+ +
Sbjct: 636 FRDSQ-ERLNVLKAVSV 651
>gi|313212908|emb|CBY36814.1| unnamed protein product [Oikopleura dioica]
Length = 929
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/730 (36%), Positives = 402/730 (55%), Gaps = 25/730 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +L VAEK AK++A LS N + G S+YN++Y+F G +MTSV+GH
Sbjct: 1 MKILCVAEKNDAAKNIAHQLS-NGSAQNHAGPSKYNRLYKFYSMFEGHQADFVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +F +++ W S +P L+ AP+ K V ++ +K+ LE+++R L++W DCDRE
Sbjct: 60 MQNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSRIHAVLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI EV+ VC+ N +L + RARFS + + +A+ NL N A+AVDARQE+DL
Sbjct: 120 GENIGAEVVNVCKRANRNLRVLRARFSEITQTAVRRAIANLAPLNTLVAEAVDARQELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGASFTR Q++ L+ + ++S+G CQFPTLGFVVER+ I+ + E+FW
Sbjct: 180 RIGASFTRLQSLFLQRRFPALASR----LVSFGSCQFPTLGFVVERWRSIEEFQPEKFWK 235
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H F+W R LF + V IY+ + A VT + + K K+ P+PL T
Sbjct: 236 IEVHHTRGGMNTLFTWSRVRLFSQRAVVAIYDEIEESGRAKVTHLESKPKSKWRPFPLET 295
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ELEK+ R ++++ M VAE LY G+ISYPRTET+ F +L +V+ Q +
Sbjct: 296 VELEKKG-RMLGLTAKEIMSVAEKLYLKGYISYPRTETNIFPKSLDLRPMVEAQQRDNRF 354
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
+A +L + GL NP +G D+AHPPIHP K +G K++E + R FLA
Sbjct: 355 TTFASDILQN--GL--NPRNGKKTDEAHPPIHPLKEGAG---LVGPEAKVHEFISRRFLA 407
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C+S+ A G ET +I +A E F+ G +I + YL++Y ++ W +P+Y ++F+ T
Sbjct: 408 CLSRDATGFETTCKIEVAEEEFTAKGLLISDRGYLEIYPYDKWSDKTLPSYRFNEEFMIT 467
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L T P LSE DL+ MDK GIGTDAT DHI + R Y RF P++
Sbjct: 468 NAELCESSTSAPLYLSEPDLIGLMDKYGIGTDATHADHIATIQSRGYISLTREKRFIPSS 527
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA--- 604
+G LV Y+D+ L LRS +E D+ + G K++A+VL + + +
Sbjct: 528 LGIGLVTAYEDLSIPLANHLLRSGLEKDLVRIENGEKTRAEVLRTQITAYREAYKKTEEN 587
Query: 605 --RLKKVKLLEAMGIFFERWSGGE-DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
R V + E++G E + AA V +C CQ MV+K +G++ V C
Sbjct: 588 LNRFSDV-IAESLGDIPRNDEPFELPRNAADTSVARCPRCQ-CPMVVKTIPNGSVCVSCT 645
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
+P+C+ + +LP ++CN C+ G Y +++ F +P + GC+ GC
Sbjct: 646 GYPECKTSGFLPRG-GRMVTRMHSCN-CSDG-FYKVKWNFESGSVPGHMTGEYEGCL-GC 701
Query: 722 DETLRQLIEI 731
D+ L+Q+I I
Sbjct: 702 DDDLKQVIRI 711
>gi|330914108|ref|XP_003296497.1| hypothetical protein PTT_06616 [Pyrenophora teres f. teres 0-1]
gi|311331314|gb|EFQ95407.1| hypothetical protein PTT_06616 [Pyrenophora teres f. teres 0-1]
Length = 667
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 259/648 (39%), Positives = 364/648 (56%), Gaps = 64/648 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
VL VAEKPS+AK+VA L G +Y K Y+F++ R P C + T V G
Sbjct: 4 VLCVAEKPSIAKAVANHLGGQARAENVRG-IQYVKNYKFDF--RFNPWGDCSVTFTCVAG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H++ DF+++++KWHSC P+ L+ AP+ + +DKK + +E +AR L +W DCDR
Sbjct: 61 HIVHRDFNDQFKKWHSCPPSALFDAPIVSSIAQDKKIVASNIEAQARYASILYIWTDCDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I ++ ++ N ++ + RARFS + + QA QN + ++ A+AV AR E+D
Sbjct: 121 EGEHIGSQIRDIALKANPNMQVWRARFSNIERAHVIQASQNPIRLDEAQAEAVSARIELD 180
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+GA+FTR QT L+N I + R ++SYG CQFPTLGFVV+RY ++ E FW
Sbjct: 181 LRLGAAFTRMQTFALQNM-IPQQGEQRGKIISYGSCQFPTLGFVVDRYLRVRNFVPEPFW 239
Query: 247 TINCSHKSE-EGT-----ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
I H E E T FSW RGHLFD + II+E C+ TA V K+ ++ K+
Sbjct: 240 YIKVGHTKELEQTKDKVDVKFSWRRGHLFDRMAVTIIFEKCLLAKTAKVVKMAKKPTSKW 299
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T+EL+K SR+ RM+S+ MKVAE+LY G+ISYPRTETD F +L +V
Sbjct: 300 KPLPLTTVELQKMGSRFLRMTSQDVMKVAEELYTKGWISYPRTETDQFDKAIDLRTLVGR 359
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q WGP+AQ L++ G + P G ++DKAHPPIHP + + ++ + +YE
Sbjct: 360 QTQDGRWGPFAQNLMN---GGFHQPRQGRNNDKAHPPIHPVNYVA-PTQLNDRERTVYEF 415
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYV 479
VVR FLAC S+ AVG T +EI+ GE F G ++A+NYLDVY ++ W V+P Y
Sbjct: 416 VVRRFLACCSEDAVGEATDIEIDYGGEFFHAHGLTVMARNYLDVYPYDKWESSQVLPKYT 475
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ F PT ++ G T P L+E +L+S MD GIGTDATM DHI ++ R Y I A
Sbjct: 476 VGETFEPTEASMQDGQTCAPNYLTEPELISLMDANGIGTDATMADHIDRIQMREYVIARA 535
Query: 540 NT--------------------------------------------RFAPTNIGEALVMG 555
F PT +G AL+ G
Sbjct: 536 KGGGTAAAANGTGRGRGEGRGGRGGRGGRGGAAVGQDGGGGTSGVQEFIPTTLGVALIEG 595
Query: 556 YDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
YD++G+E L KP LR ME MK + G ++ DV+ L++ +A F
Sbjct: 596 YDNVGFETSLSKPFLRKEMEVQMKAICEGRTTRNDVVQQNLEKYRAVF 643
>gi|313245530|emb|CBY40233.1| unnamed protein product [Oikopleura dioica]
Length = 914
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/730 (36%), Positives = 402/730 (55%), Gaps = 25/730 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +L VAEK AK++A LS N + G S+YN++Y+F G +MTSV+GH
Sbjct: 1 MKILCVAEKNDAAKNIAHQLS-NGSAQNHAGPSKYNRLYKFYSMFEGHQADFVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +F +++ W S +P L+ AP+ K V ++ +K+ LE+++R L++W DCDRE
Sbjct: 60 MQNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSRIHAVLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI EV+ VC+ N +L + RARFS + + +A+ NL N A+AVDARQE+DL
Sbjct: 120 GENIGAEVVNVCKRANRNLRVLRARFSEITQTAVRRAIANLAPLNTLVAEAVDARQELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGASFTR Q++ L+ + ++S+G CQFPTLGFVVER+ I+ + E+FW
Sbjct: 180 RIGASFTRLQSLFLQRRFPALASR----LVSFGSCQFPTLGFVVERWRSIEEFQPEKFWK 235
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H F+W R LF + V IY+ + A VT + + K K+ P+PL T
Sbjct: 236 IEVHHTRGGMNTLFTWSRVRLFSQRAVVAIYDEIEESGRAKVTHLESKPKSKWRPFPLET 295
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ELEK+ R ++++ M VAE LY G+ISYPRTET+ F +L +V+ Q +
Sbjct: 296 VELEKKG-RMLGLTAKEIMSVAEKLYLKGYISYPRTETNIFPKSLDLRPMVEAQQRDNRF 354
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
+A +L + GL NP +G D+AHPPIHP K +G K++E + R FLA
Sbjct: 355 TTFASDILQN--GL--NPRNGKKTDEAHPPIHPLKEGAG---LVGPEAKVHEFISRRFLA 407
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C+S+ A G ET +I +A E F+ G +I + YL++Y ++ W +P+Y ++F+ T
Sbjct: 408 CLSRDATGFETTCKIEVAEEEFTAKGLLISDRGYLEIYPYDKWSDKTLPSYRFNEEFMIT 467
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L T P LSE DL+ MDK GIGTDAT DHI + R Y RF P++
Sbjct: 468 NAELCESSTSAPLYLSEPDLIGLMDKYGIGTDATHADHIATIQSRGYISLTREKRFIPSS 527
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA--- 604
+G LV Y+D+ L LRS +E D+ + G K++A+VL + + +
Sbjct: 528 LGIGLVTAYEDLSIPLANHLLRSGLEKDLVRIENGEKTRAEVLRTQITAYREAYKKTEEN 587
Query: 605 --RLKKVKLLEAMGIFFERWSGGE-DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
R V + E++G E + AA V +C CQ MV+K +G++ V C
Sbjct: 588 LNRFSDV-IAESLGDIPRNDEPFELPRNAADTSVARCPRCQ-CPMVVKTIPNGSVCVSCT 645
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
+P+C+ + +LP ++CN C+ G Y +++ F +P + GC+ GC
Sbjct: 646 GYPECKTSGFLPRG-GRMVTRMHSCN-CSDG-FYKVKWNFESGSVPGHMTGEYEGCL-GC 701
Query: 722 DETLRQLIEI 731
D+ L+Q+I I
Sbjct: 702 DDDLKQVIRI 711
>gi|156037882|ref|XP_001586668.1| hypothetical protein SS1G_12655 [Sclerotinia sclerotiorum 1980]
gi|154698063|gb|EDN97801.1| hypothetical protein SS1G_12655 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 670
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/663 (40%), Positives = 370/663 (55%), Gaps = 68/663 (10%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVTGH 67
+L VAEKPS+AK+VA L+ + R++Y K Y F + GQ C+ +MTSV+GH
Sbjct: 5 ILCVAEKPSIAKAVANHLAGGSA-QASSTRNKYIKNYTFTFDFGGQWGNCNAVMTSVSGH 63
Query: 68 LMELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
L LD +R W P L+ APV + + EDKK I + +E +AR + L +W DCDR
Sbjct: 64 LTSLDVAPSHRSWTDPPPKSLFFEAPVIESIAEDKKVIAQNIESQARGARALFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV + N + ++RARFS + + QA ++ VD +Q DAV AR E+D
Sbjct: 124 EGEHIGGEVRDQALKGNPRIEVKRARFSNIERAHVIQAAKHPVDLDQRQVDAVAARIELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT L+ + D+ +LSYG CQFPTLGFVV+RY++++ E FW
Sbjct: 184 LRIGYAFTRFQTTNLQK--LGGPLADK--MLSYGSCQFPTLGFVVDRYFKVKNFVPEPFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I +H E+ F+W R LFD +I++E C+ +TKV+++ K+ P PL+
Sbjct: 240 SIKITHSREDMNVIFNWKRNRLFDRAVVIILFERCIAAKFGKITKVQEKPTKKWKPLPLT 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K ASR+ M+S+ M AE LY GFISYPRTETD F G NL +V++QI
Sbjct: 300 TVELQKAASRWLHMNSQMAMTAAESLYNKGFISYPRTETDRFDKGMNLRALVEKQIQDNR 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ L++ G +R P G +DDKAHPPIHP + + + + ++YE VVR FL
Sbjct: 360 WGQFAQNLIN---GGFRWPRDGRNDDKAHPPIHPVIYVA-PTALKPEEARIYEFVVRRFL 415
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFI 485
AC S+ A G T VE+ E+F T G V+L KNYLDVY +E W +P + G+ F
Sbjct: 416 ACCSEDAKGQATDVELEYGNEIFQTHGLVVLEKNYLDVYIYEKWNSSTPLPKFALGESFE 475
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-------- 537
P + G T P L+E DL++ MD GIGTDATM +HI K+ DR Y
Sbjct: 476 PDEAMITDGKTTAPGYLTEPDLIALMDANGIGTDATMAEHIAKIKDREYVFTRPKAGGAA 535
Query: 538 ----DANT----------------------------------------RFAPTNIGEALV 553
D NT F PT +G +LV
Sbjct: 536 AASFDDNTPAAGRGGRGGRGGRGGRGGRDGREDRGGAAADVGGRGGVEEFIPTTLGVSLV 595
Query: 554 MGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKL 611
GYD+M +E L KP LR ME +MK + G K++ DV+ L Q + FLD+ +++ +
Sbjct: 596 EGYDNMEFEVSLSKPFLRKEMELNMKAICEGQKTRRDVVRESLTQYQRVFLDS-TERLAV 654
Query: 612 LEA 614
L+A
Sbjct: 655 LKA 657
>gi|82914812|ref|XP_728858.1| DNA topoisomerase III [Plasmodium yoelii yoelii 17XNL]
gi|23485425|gb|EAA20423.1| DNA topoisomerase iii [Plasmodium yoelii yoelii]
Length = 677
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 252/661 (38%), Positives = 375/661 (56%), Gaps = 74/661 (11%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
GR I VLNVAEKPSVA ++ ILSK + + + N ++ F+Y + + M +TSV
Sbjct: 2 GR-IKVLNVAEKPSVASAIVSILSKGKSNKKKSYSKY-NPVFTFDYKMENETWSMFVTSV 59
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
TGHL + FD++Y+ W++ DP +L+ A + ++ +DKK I+ L++ ++ C L+LWLDC
Sbjct: 60 TGHLTDQKFDDKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLILWLDC 119
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I FEVI C N L + RA+FSA+ +++I A+ NL PN+ A +VD R+E
Sbjct: 120 DREGEHICFEVINACSVTNKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQSVDVRRE 179
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
IDLR+G+ FTRF T+ + V +D ++SYGPCQFPTLGFVV RY +I+ +E
Sbjct: 180 IDLRMGSIFTRFMTIR----YFKLVQNDTK-IISYGPCQFPTLGFVVNRYLQIKNFNNEY 234
Query: 245 FWTI---------NCS---------------------------------HKSEEGTATFS 262
+WTI NC+ + S + A S
Sbjct: 235 YWTIKMGYLYQDKNCNNSNLFLDNIGKNKKEREKKKKKKKGKKKKNCTDYYSSDDDANNS 294
Query: 263 W---------MRGHLFDYT----------SAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+ ++ D+T V+IYE ++ P ++ + ++E KY P+
Sbjct: 295 YDINNRPDSSNTNYVVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPF 354
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+++ K S+YF +SS+ M +AE LY G+ISYPRTET+ F NL I+ E
Sbjct: 355 PLNTLQMTKLVSKYFHISSKECMNIAEKLYNKGYISYPRTETNYFVDSMNLRKIIHELKK 414
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+ +G YA +L + + P G +DKAHPPIHP K + + +K+YE + R
Sbjct: 415 NNIFGSYATKLAEKNSC---KPRKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICR 471
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HFLA S A+G +T V NI E F G I KNYL++Y +E W ++P + +
Sbjct: 472 HFLAVCSDDAIGFDTKVIANIGEEQFYCKGLKIKNKNYLEIYIYEKWNDKILPPFQINDE 531
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
F P +L ++ +T+PP LSE+DLLS MDK GIGTDATMH+HI+ + R Y K++ F
Sbjct: 532 FYPYSLVVEEXITQPPKYLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVYKNSKNLF 591
Query: 544 APTNIGEALVMGY---DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
PT +G AL++ Y D+G +L +P+LR+ ME DM V+ G K K +++ N + MK
Sbjct: 592 IPTKLGIALILSYKKFKDIGVDLTEPSLRAKMERDMFLVASGEKGKNEIIRNYIDIMKYI 651
Query: 601 F 601
+
Sbjct: 652 Y 652
>gi|67536770|ref|XP_662159.1| hypothetical protein AN4555.2 [Aspergillus nidulans FGSC A4]
gi|40741708|gb|EAA60898.1| hypothetical protein AN4555.2 [Aspergillus nidulans FGSC A4]
gi|259482615|tpe|CBF77265.1| TPA: DNA topoisomerase III (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 629
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/630 (40%), Positives = 373/630 (59%), Gaps = 29/630 (4%)
Query: 1 MAGGGRPINVLNVAEKPSVAKSVAGILS--KNQGLRIREGRSRYNKIYEFNYSIRGQPCH 58
MAG VL VAEKP++AK+VA LS + + + R N +++FN+ +
Sbjct: 1 MAG----TKVLCVAEKPAIAKAVAQHLSGGRMETKNVTGNRFVKNYVFDFNFGNQWGNSS 56
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
+ MTSV GHL L+F+ +Y W SC PA L+ APV+ V +DKK I + ++A Q+L
Sbjct: 57 VTMTSVLGHLTSLEFERQYSGWASCPPAALFEAPVKIAVDDDKKAIANNIMKQATHSQYL 116
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA 178
V+W DCDREGE+I EV + +A N +V++RA+F+ + A ++L++ ++ A+A
Sbjct: 117 VIWTDCDREGEHIGTEVRDQAKAGNGRIVVKRAKFNNTEKIHVLNAARSLIELDERQANA 176
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
V AR E+DLRIGA+FTR T+ L+N H ++T V+SYG CQFPTLGFVV+RY ++
Sbjct: 177 VAARIELDLRIGAAFTRLLTLQLQNLHA-TLTQK---VISYGSCQFPTLGFVVDRYLRVK 232
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
+ E FW I H + +F W R HLFD + I+ E C+ A VTKV Q+
Sbjct: 233 RFKPETFWGIKVMHTRDGIKVSFLWNRVHLFDRAAVTIMLERCLMATKAEVTKVNQKPTS 292
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
K+ P PL+T++L+ ++Y RM S MK+AE+LY GFISYPRTETD F G +L ++
Sbjct: 293 KWRPLPLTTVDLQMMGTKYLRMDSAKVMKIAENLYTKGFISYPRTETDQFDKGIDLKKLI 352
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
++Q+ WG YA+ LL G +R P +G H+D+AHPPIHP + + + ++D K+Y
Sbjct: 353 EKQLPDERWGEYARCLL---GGNFRTPRAGRHNDQAHPPIHPVCWVN-PTTLTEDERKVY 408
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPT 477
E V R FLAC S A G T VEI E+F G ++L +NYLDVY ++ W +P
Sbjct: 409 EFVTRRFLACCSDDAKGQSTDVEIRYGDEMFHAHGLLVLERNYLDVYVYDKWESTQQLPN 468
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY--- 534
Y G+ F PT + G T PP L+E +L+ MD GIGTDATM +HI+++ R Y
Sbjct: 469 YQVGELFEPTEANMFDGKTSPPNYLTEPELIGLMDANGIGTDATMAEHIERIKSREYIGE 528
Query: 535 ----AIKDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNK 584
+ ++A PT +G AL++GY+D+ L KP LR ME +M++V G +
Sbjct: 529 MTRGSGRNAVKLLIPTRLGIALILGYEDVFAGLADSPSLSKPFLRKQMELEMRDVCAGTR 588
Query: 585 SKADVLANCLQQMKACFLDARLKKVKLLEA 614
+ V+ L + F+ + +++ +L+A
Sbjct: 589 LRTHVVQQNLDMYRELFIHTQ-RRMNMLKA 617
>gi|407399794|gb|EKF28434.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 917
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 280/697 (40%), Positives = 391/697 (56%), Gaps = 35/697 (5%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK ++ +LS N R+ SR+N ++EF++ + ML TSV GHLM
Sbjct: 5 LNVAEKPSVAKELSFVLS-NGTCRMGNSLSRFNPVFEFDFEGK----QMLCTSVAGHLMN 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+F R W S +L+ A + KHV + + +KK LE RR LVLW+DCDREGEN
Sbjct: 60 DEFPPETRSWQSYPLVNLFTASITKHVKPEMEPVKKNLETLGRRASNLVLWMDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V + VN + + RA FSAL R++ AV++L PN+ +DAV+ARQEIDLRIG
Sbjct: 120 ICFEVMQVVQGVNRSINICRAHFSALTRRDLLSAVRSLKAPNKALSDAVEARQEIDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A F+RFQT+ ++ VLS+GPCQ PTLGFVV R+ E + E+F+T+
Sbjct: 180 AVFSRFQTIKFRD-----AFSGMPRVLSFGPCQIPTLGFVVRRHREREGFVQEDFFTLVM 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE----PTATVTKVRQQEKLKYPPYPLS 306
H G F RG +FD +A ++ EM ++ A V V ++ ++PP PL+
Sbjct: 235 RH----GQTVFHGCRGSVFDQIAATLVLEMMLESAGPNAEALVVDVVRRPTRRHPPVPLA 290
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGHP 365
T+ L+K A+ + +SSE M AE LYQ GFISYPRTETDSFS + L I Q +P
Sbjct: 291 TVALQKLAATHLHISSEQCMTWAESLYQEGFISYPRTETDSFSFTDDELREIAGVQRDNP 350
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY-KLYELVVRH 424
+ Y +LD + +R P GGHDDKAHPPI+PTK R QD LY L+VRH
Sbjct: 351 EVADYVGAMLDDPSNKFRRPLKGGHDDKAHPPIYPTKL----MRAKQDSRGALYNLIVRH 406
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLAC+S AV A T V E F+TSG IL K +L+VY +E W IP Y G++F
Sbjct: 407 FLACLSPDAVAATTAVTAVFGEEKFTTSGTAILEKGWLEVYPYERWNSTFIPAYQQGERF 466
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+P ++L+ T PPP L+E L++ MD+ GIGTDAT+ HIK +LDR Y +K +
Sbjct: 467 VPKDISLEKHRTTPPPHLTETALIALMDEHGIGTDATIAQHIKTVLDRGY-VKREGSFLV 525
Query: 545 PTNIGEALVMGYDDMG-YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT +G AL Y+ +G L +P LR+ ME M ++ G SKA V+ ++ F
Sbjct: 526 PTALGIALASAYEVIGLLSLLQPQLRAQMELAMSDIVSGKASKAQVVDAAVKLYTEVFQK 585
Query: 604 ARLKKVKLLEAMGIFFE---RWSGGEDQQAAGEV----VRQCGICQESNMVLKKSRDGNL 656
L ++ E + + G G + + CG+C+ + M L + +G
Sbjct: 586 LSLGSKEMYEELCCHLSPAAPQTSGTHAYGTGRIDQRRLVHCGVCK-NPMDLIEQAEGER 644
Query: 657 MVGCLAFPQCRNAVWLP-GSVSEAAVTTNTCNSCTPG 692
C+ C +P G +++ + +C C G
Sbjct: 645 DAWCVRCHTCLKDYRVPNGRLNQLSSCGQSCILCGFG 681
>gi|403369401|gb|EJY84543.1| DNA topoisomerase [Oxytricha trifallax]
Length = 894
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/691 (37%), Positives = 391/691 (56%), Gaps = 69/691 (9%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV+GHLM + F + W DLY PV K + + + + L E ++ + L L
Sbjct: 1 MTSVSGHLMRMKFPIENKIWIDSKIKDLYRMPVVKDLIDGNARVLQNLHEMSQDVEELHL 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
WLDCDREGE IAF+V ++C+ VN +++++RA FSAL +++++A QNL +PN+ ADAV
Sbjct: 61 WLDCDREGEAIAFDVADMCKQVNKYMLVKRAHFSALTSQDVNKAAQNLQEPNKNLADAVK 120
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
ARQEIDLRIGASFT+ QT+ K+ + T N +LSYGPCQFPTLGFVVER +I+
Sbjct: 121 ARQEIDLRIGASFTQLQTLSFKDVLFKNSTSG-NKILSYGPCQFPTLGFVVERANKIKNF 179
Query: 241 ESEEFWTINCSHK---SEEGTAT-------FSWMRGHLFDYTSAVIIYEMCVQEPTATVT 290
+SE W + H EEG+ F R D +Y ++ V
Sbjct: 180 KSEITWRLELVHSYNTKEEGSENTTKQVIKFISTREKELDKKIIEDLYSK-IKGMNPAVI 238
Query: 291 KVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSS 350
V + EK + P PL+TIE +K S+ SS+H M+ EDLY+ +ISYPRTET+ +
Sbjct: 239 DVTKTEKYRPRPTPLNTIEAQKLISKKLGFSSDHAMEYMEDLYRKAYISYPRTETNVYHP 298
Query: 351 GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW 410
NL I+QE D+ + ++LL+ + P +G DDKAHPPIHP +F E +
Sbjct: 299 TINLRRIIQELNNDKDYSGFTKKLLE--LNNYGGPRNGKQDDKAHPPIHPVRFMKEEDKV 356
Query: 411 S--QDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFE 468
+ + K+Y+++ RHFLA VS+ AV ET+V+I I E T G ++ KNYL+++ F+
Sbjct: 357 NLPPNQVKVYDMICRHFLASVSKDAVAQETVVKIQIGEEQLQTQGLIVEKKNYLEIFPFD 416
Query: 469 SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKK 528
+W ++P + G+Q +L + T+PP LSE+DL+ MD+ GIGTDAT+H+HIKK
Sbjct: 417 TWDSTLLPDFKVGEQITYDSLKVAKTTTKPPQYLSESDLIDTMDQNGIGTDATIHEHIKK 476
Query: 529 LLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKAD 588
+ +R YA+ +F PT +G++L+ Y+++G ++ KP LR+ ME +M+ ++ G KSK +
Sbjct: 477 IQERQYAMVQGK-KFKPTLLGQSLIDAYEEIGVDIHKPYLRAQMEREMRLIAEGKKSKDE 535
Query: 589 VLANCLQQMKACF--LDARLKKVK----------------LLEAMGIFFERWSG--GEDQ 628
L L QM+ + + ++ ++K L E G+F R+SG G+ Q
Sbjct: 536 FLKETLTQMEGVYDQVSGKVDQIKNYLQVNYKQQFDDMYTLDEKEGVF--RFSGDLGDSQ 593
Query: 629 -------QAAGEVVRQ----------------------CGICQESNMVLKKS-RDGNLMV 658
+ E+V+Q C C +++MV+ S + GN
Sbjct: 594 NLNFNQEKKQQEIVKQVLGENSQERGNKNSIANTKICKCYKCNKNDMVMMISGKTGNPFF 653
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
GC FP+C N + +P S+ +A V+ +C SC
Sbjct: 654 GCQGFPKCINPLPVPRSILKAEVSNESCPSC 684
>gi|170093393|ref|XP_001877918.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647777|gb|EDR12021.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 716
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 248/610 (40%), Positives = 357/610 (58%), Gaps = 26/610 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A+S+ GILS Q R + + K Y+F+Y +T V+GH
Sbjct: 1 MRVLCVAEKPSIARSITGILSGGQ-YSTRNTGNNFVKNYDFDYPQTNST--FTVTCVSGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L DF E +RKW+SCDP L+ APV +P DKK I++ L E R L++W DCDRE
Sbjct: 58 LTSQDFGEAHRKWNSCDPFALFDAPVETLIPPDKKSIERNLRTEGGRADTLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ VCR ++V++RARFSA+I ++IH A Q+ ++ ++ A+AV+AR +DL
Sbjct: 118 GEHIGMEIARVCRKAKPNIVVKRARFSAIIAQQIHHAAQHPIELDRAQAEAVEARILLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++GA+FTR QT+ L+ VLSYGPCQFPTLGFVV+RY ++A E FW
Sbjct: 178 KVGAAFTRMQTLALQRQFAQL-----EGVLSYGPCQFPTLGFVVQRYNRVKAFRPETFWY 232
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I S + F+W GHLFD A IYE+ +Q P A V +V +++ K+ P PL+T
Sbjct: 233 IYLSLTRDGEETKFTWKEGHLFDQGGAARIYEIVLQNPRARVIRVTKKDTKKWKPLPLTT 292
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL+K SR +++ + + VAE LYQ GF+SYPRTETD F + ++ +Q P W
Sbjct: 293 VELQKAGSRLLKLAPKKVLDVAEKLYQQGFVSYPRTETDQFDPQFDFMTLIGKQTVDPAW 352
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G +A+ + G+ P G ++DKAHPPIHPT + D K+YE + R FLA
Sbjct: 353 GEFARTYQNGGFGV---PRKGKNNDKAHPPIHPTAHAGN---LVGDEKKVYEYITRRFLA 406
Query: 428 CVSQPAVGAETIVEINIAGEVFS--TSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
C S+ A G++T VE+ GE F G ++L +NYL+VY ++ W G +P + G++F
Sbjct: 407 CCSKDAEGSQTTVEVVCGGEDFYPLPLGLIVLQRNYLEVYPYDKWIGHTVPNFQEGEEFD 466
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI---KDANTR 542
P+ L G T P L+EADL++ MDK GIGTDAT+ HI+ ++DR Y + + A
Sbjct: 467 PSVCELREGQTSKPNYLTEADLVTLMDKNGIGTDATIAQHIQTIVDREYVVERMEGAIKY 526
Query: 543 FAPTNIGEALVMGYDDMGYELWK-------PNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
P+ +G L+ GY+++G + L E M +V +K D+L L
Sbjct: 527 LVPSTLGIGLIDGYNEIGKSFSRLLSFTRLTFLVHQTERRMVQVCERTTTKNDMLQTSLD 586
Query: 596 QMKACFLDAR 605
Q K F+ AR
Sbjct: 587 QYKHMFIIAR 596
>gi|313216789|emb|CBY38031.1| unnamed protein product [Oikopleura dioica]
gi|313233526|emb|CBY09698.1| unnamed protein product [Oikopleura dioica]
Length = 933
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/730 (36%), Positives = 402/730 (55%), Gaps = 25/730 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +L VAEK AK++A LS N + G S+YN++Y+F G +MTSV+GH
Sbjct: 1 MKILCVAEKNDAAKNIAHQLS-NGSAQNHAGPSKYNRLYKFYSMFEGHQADFVMTSVSGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +F +++ W S +P L+ AP+ K V ++ +K+ LE+++R L++W DCDRE
Sbjct: 60 MQNYEFPKQFSNWSSVNPDSLFDAPISKQVTKNMHKVKQNLEQQSRIHAVLIIWTDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI EV+ VC+ N +L + RARFS + + +A+ NL N A+AVDARQE+DL
Sbjct: 120 GENIGAEVVNVCKRANRNLRVLRARFSEITQTAVRRAIANLAPLNTLVAEAVDARQELDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGASFTR Q++ L+ + ++S+G CQFPTLGFVVER+ I+ + E+FW
Sbjct: 180 RIGASFTRLQSLFLQRRFPALASR----LVSFGSCQFPTLGFVVERWRSIEEFQPEKFWK 235
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H F+W R LF + V IY+ + A VT + + K K+ P+PL T
Sbjct: 236 IEVHHTRGGMNTLFTWSRVRLFSQRAVVAIYDEIEESGRAKVTHLESKPKSKWRPFPLET 295
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ELEK+ R ++++ M VAE LY G+ISYPRTET+ F +L +V+ Q +
Sbjct: 296 VELEKKG-RMLGLTAKEIMSVAEKLYLKGYISYPRTETNIFPKSLDLRPMVEAQQRDNRF 354
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
+A +L + GL NP +G D+AHPPIHP K +G K++E + R FLA
Sbjct: 355 TTFASDILQN--GL--NPRNGKKTDEAHPPIHPLKEGAG---LVGPEAKVHEFISRRFLA 407
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C+S+ A G ET +I +A E F+ G +I + YL++Y ++ W +P+Y ++F+ T
Sbjct: 408 CLSRDATGFETTCKIEVAEEEFTAKGLLISDRGYLEIYPYDKWSDKTLPSYRFNEEFMIT 467
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L T P LSE DL+ MDK GIGTDAT DHI + R Y RF P++
Sbjct: 468 NAELCESSTSAPLYLSEPDLIGLMDKYGIGTDATHADHIATIQSRGYISLTREKRFIPSS 527
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA--- 604
+G LV Y+D+ L LRS +E D+ + G+K++A+VL + + +
Sbjct: 528 LGIGLVTAYEDLSIPLANHLLRSGLEKDLVRIENGDKTRAEVLRTQITAYREAYKKTEEN 587
Query: 605 --RLKKVKLLEAMGIFFERWSGGE-DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
R V + E++G E + AA V +C CQ MV+K +G++ V C
Sbjct: 588 LNRFSDV-IAESLGDIPRNDEPFELPRNAADNSVARCPRCQ-CPMVVKTIPNGSVCVSCT 645
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGC 721
+P+C+ + +LP + CN C+ G Y +++ F +P + GC+ GC
Sbjct: 646 GYPECKTSGFLPRG-GRMVSRMHFCN-CSDG-FYKVKWNFESGSVPVHMTGEYEGCL-GC 701
Query: 722 DETLRQLIEI 731
D+ L+Q+I I
Sbjct: 702 DDDLKQVIRI 711
>gi|407924030|gb|EKG17090.1| DNA topoisomerase type IA [Macrophomina phaseolina MS6]
Length = 671
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 256/629 (40%), Positives = 349/629 (55%), Gaps = 65/629 (10%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQ--GLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+L VAEKPS+AK+VA LS Q R+R + N + +N+ R C ++ T+V G
Sbjct: 3 KILCVAEKPSIAKAVAEHLSGRQMDTRRVRGTQFISNYSFTYNFGHRWGNCSVVFTAVAG 62
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL DF +YR W+SC P +L+ AP++ V +DKK I + ++ AR C L +W DCDR
Sbjct: 63 HLTSQDFASQYRYWNSCRPQELFEAPIQTFVADDKKGIAQNIQALARDCDGLFIWTDCDR 122
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I E+ E R + ++RARFS + + A +N VD ++ A+AV AR E+D
Sbjct: 123 EGEHIGTEIREWARKGKRDIEVKRARFSNIERAHVINAARNPVDIDERAANAVAARIELD 182
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR QT L R V+SYG CQFPTLGFVV+RY+ ++ E FW
Sbjct: 183 LRIGAAFTRMQTQTL------GAMIQREGVISYGSCQFPTLGFVVDRYFRVKNFVPEPFW 236
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I H E+ F+W RGHLFD + I++E C+ TA V K++++ K+ P PL+
Sbjct: 237 NIKVMHVKEDIKVNFTWKRGHLFDRMAVTILFERCLAARTAKVAKMQKKPTSKWRPLPLT 296
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K SRY RM S+ MK AE LYQ G+ISYPRTETD F +L I+++Q D
Sbjct: 297 TVELQKMGSRYLRMDSQAVMKAAEKLYQNGWISYPRTETDQFDKSMDLRRIIEKQHQSRD 356
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG YAQ L G +R P +G H+D+AHPPIHP F + ++ ++YE VVR FL
Sbjct: 357 WGTYAQSL---TGGGFRQPRNGRHNDQAHPPIHPVNFVEKSAIQNEQERRVYEFVVRRFL 413
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFI 485
AC S+ A G T VEI E F T G +L +NYLDVY ++ W +PT+ G+ F
Sbjct: 414 ACCSEDAKGEATDVEIFYGSETFRTHGLKVLERNYLDVYPYDKWESSQQLPTFAVGEVFE 473
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA---------- 535
PT + G T PP L+E +L+S MD GIGTDATM +HI K+ +R Y
Sbjct: 474 PTEANMGEGKTSPPGYLTEPELISLMDANGIGTDATMAEHIVKIKEREYVMTRPRSGGQG 533
Query: 536 --------------------------------IKDANTR---------FAPTNIGEALVM 554
+ +A R F PT +G ALV
Sbjct: 534 DAGGEGMEDGAPGGRGGRGARGGRGRGRGGRGVSNAAARGGGSSGVEEFIPTTLGVALVT 593
Query: 555 GYDDMGYE--LWKPNLRSMMESDMKEVSV 581
GYDD+G+E L KP LR + + ++V
Sbjct: 594 GYDDVGFETSLSKPFLRKQVRQFLPMLAV 622
>gi|398398505|ref|XP_003852710.1| DNA topoisomerase 3 [Zymoseptoria tritici IPO323]
gi|339472591|gb|EGP87686.1| hypothetical protein MYCGRDRAFT_71866 [Zymoseptoria tritici IPO323]
Length = 636
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/631 (40%), Positives = 368/631 (58%), Gaps = 31/631 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILS--KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVT 65
I VL VAEKPS+AK+VA L + Q I+ + N I+++N+ GQ C + MTSV
Sbjct: 3 IQVLCVAEKPSIAKAVANHLGGGQVQCRSIQGNQFIKNYIFDYNFPGWGQ-CSVTMTSVA 61
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHLM DF Y+ W SCDP+ L+ + ++ ++K I +E +A+ ++L +W DCD
Sbjct: 62 GHLMSHDFPREYKGWQSCDPSALFECRIESYIDNERKAIAANIENQAQYARYLYIWTDCD 121
Query: 126 REGENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
REGE I E+ +V N +L RARFS + I A + + ++ A AV +
Sbjct: 122 REGEAIGSEIRDVACKKNAYLRNPGKTVRARFSNIERAHIIAAARAPIPLDEAQAAAVAS 181
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E+DLR+G +FTR ++ L+ + V+SYG CQFPTLGFVVERY+ ++
Sbjct: 182 RIELDLRVGVAFTRNLSLTLQAM----IPGREGSVISYGSCQFPTLGFVVERYFRVKNFL 237
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E FW I H+ + F W RGHLFD I++E C+ TA VTKV ++ K+
Sbjct: 238 PETFWGIKVMHEKDRVKVNFHWSRGHLFDRMVVTILFERCLTARTARVTKVTKKPTSKWK 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T+EL+K SR+ RM+S+ M++AE LYQ GFISYPRTETD F T+L+ I+ +Q
Sbjct: 298 PLPLTTVELQKCGSRFLRMNSQRVMQIAEKLYQDGFISYPRTETDQFDRNTDLNTIIDKQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
I PDWG +AQ L + G + P G ++DKAHPPIHP F + + +H ++YE +
Sbjct: 358 IQSPDWGNFAQGLRN---GGFSWPRMGRNNDKAHPPIHPVNFVANNA-LDHEHRRVYEFI 413
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH 480
VR FLAC S+ A G +T + I E F+ SG ++L +NYLDVY ++ W +P +
Sbjct: 414 VRRFLACCSKDAQGTKTDIGILYGAETFNASGLMVLERNYLDVYPYDKWTSSQELPIFAV 473
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G+ F+PT + G T PP L+E +L+ MD GIGTDATM +HI K+ +R Y +
Sbjct: 474 GETFVPTEARMHEGETTPPGYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVMARPR 533
Query: 541 TR------------FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSK 586
R F PT +G AL+ GY+ MG+E L KP LR ME MK + G K++
Sbjct: 534 GRVQPQAGNGGVQEFIPTTLGVALIEGYESMGFEISLAKPFLRKEMELKMKAICEGRKTR 593
Query: 587 ADVLANCLQQMKACFLDARLKKVKLLEAMGI 617
V+ ++Q + ++ + +++ LL A+ +
Sbjct: 594 RQVVEETIEQYRDVYMRTQ-RQLGLLRAVSL 623
>gi|347839519|emb|CCD54091.1| similar to DNA topoisomerase III [Botryotinia fuckeliana]
Length = 665
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/658 (40%), Positives = 364/658 (55%), Gaps = 63/658 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVTGH 67
+L VAEKPS+AK+VA L+ + R++Y K Y F + GQ C+ +MTSV+GH
Sbjct: 5 ILCVAEKPSIAKAVANHLAGGSA-QATNTRNKYIKNYSFTFDFGGQWGNCNAVMTSVSGH 63
Query: 68 LMELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
L LD ++ W P +L+ A V + V EDKKDI + +E +AR + L +W DCDR
Sbjct: 64 LTSLDVAPTHKGWTDPPPQELFFKARVIESVSEDKKDIAQNIEAQARDAKALFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV N + ++RARFS + + QA +N V+ +Q DAV AR E+D
Sbjct: 124 EGEHIGGEVRAQALKGNPRIEIKRARFSNIERAHVIQAAKNPVNLDQRQVDAVAARIELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT L+ +LSYG CQFPTLGFVV+RY++++ E FW
Sbjct: 184 LRIGYAFTRFQTTNLQKLGGPLAKK----MLSYGSCQFPTLGFVVDRYFKVKNFVPEPFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I +H E F+W R LFD +I++E C+ A VTKV+++ K+ P PL+
Sbjct: 240 SIKVTHNRENMNVVFNWKRNRLFDRAVVIILFERCLAAKVAKVTKVQEKPTSKWKPLPLT 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K ASR+ M+S+ M AE LY GFISYPRTETD F G NL +V++Q+
Sbjct: 300 TVELQKAASRWLNMNSQVAMTAAESLYTKGFISYPRTETDRFDKGMNLRALVEKQVQDNR 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WGP+AQ L++ G + P G +DDKAHPPIHP + + + + ++YE VVR FL
Sbjct: 360 WGPFAQNLVN---GGFHWPREGRNDDKAHPPIHPVTYVASTA-LRPEEARVYEFVVRRFL 415
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFI 485
AC S+ A G T VE+ E F T G V+LAKNYLDVY +E W +P + G++F
Sbjct: 416 ACCSEDAKGQATDVELEYGEETFHTHGLVVLAKNYLDVYVYERWNSSTSLPKFTLGERFE 475
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--------- 536
P + G T P L+E DL++ MD GIGTDATM +HI K+ +R Y
Sbjct: 476 PDEAMITDGKTTAPGFLTEPDLIALMDANGIGTDATMAEHIAKIKEREYVFTRPKVGGAT 535
Query: 537 ---KDANT-----------------------------------RFAPTNIGEALVMGYDD 558
D NT F PT +G ALV GYD
Sbjct: 536 ARNNDDNTPAAGRGGRGGRGGRGGRGGRGGAAAADAGGRGGVEEFIPTTLGVALVEGYDS 595
Query: 559 MGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
M +E L KP LR ME MK + G ++ +V+ L Q FLD+ +++ +L+A
Sbjct: 596 MEFEVSLSKPFLRKQMELKMKAICEGQNTRQNVVHESLTQYYRVFLDS-TERLSVLKA 652
>gi|400597476|gb|EJP65209.1| DNA topoisomerase [Beauveria bassiana ARSEF 2860]
Length = 667
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/531 (44%), Positives = 330/531 (62%), Gaps = 14/531 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSV 64
+ VL VAEKPS++K+VA LS Q + R++Y K Y F+++ G P C + MT V
Sbjct: 1 MRVLCVAEKPSISKAVASHLSGGQ-FQTHNTRNQYVKNYAFDFNF-GPPYGQCSVTMTCV 58
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
+GHL L+F ++ W P L++APV +V +DKK+I + L ++AR + LV+W DC
Sbjct: 59 SGHLTNLEFTAEHKNWSFPPPESLFNAPVISNVYQDKKNIAQNLADQARYARLLVIWTDC 118
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I E+++ + N L ++RARFS + + A L+D + +AV AR E
Sbjct: 119 DREGEHIGQEIVDAAKKGNAQLQVKRARFSNIERAHVLSAAMRLIDLDVRQVNAVAARIE 178
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRF T L+ NL LSYG CQFPTLGFVV+RY+ ++ E
Sbjct: 179 LDLRIGYAFTRFMTNNLRPLG----GPMENLTLSYGSCQFPTLGFVVDRYFRVKNFVPEP 234
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW I +H E A FSW R LFD + +I+YE C+ A +TKV+++ K+ P P
Sbjct: 235 FWGIKVTHSREGKQAIFSWSRYRLFDRMTTIILYERCLAAKMAKITKVQEKPTRKFKPLP 294
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL+K A+R RMS + M +AE LY GFISYPRTETD F G NL +VQ+Q
Sbjct: 295 LTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLRALVQKQTPD 354
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
WG +AQ L++ G ++ P G HDDKAHPPIHP +++ S + D +LYE VVR
Sbjct: 355 QRWGDFAQGLVN---GGFQQPREGRHDDKAHPPIHPITYAA-PSVLNYDEGRLYEYVVRR 410
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQ 483
FLAC S+ A G+ T +++ E+FST G ++L +NYLDVY +E W +P + G+Q
Sbjct: 411 FLACCSEDAKGSATEIDLQYGEEMFSTRGVIVLERNYLDVYVYEKWNDTAELPKFTVGEQ 470
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
F PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ DR Y
Sbjct: 471 FEPTEAMMTEGKTGPPSYLTEADLIALMDANGIGTDATMAEHIQKIQDREY 521
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL++G+D M ++ L KP LR ME MK + G SK +L + Q +
Sbjct: 584 FVPTQLGVALILGFDRMDFDTSLGKPFLRKEMELKMKAICEGRLSKDAMLRESISQYRQV 643
Query: 601 FLDAR 605
F+ ++
Sbjct: 644 FMQSQ 648
>gi|70952526|ref|XP_745425.1| DNA topoisomerase III [Plasmodium chabaudi chabaudi]
gi|56525744|emb|CAH76018.1| DNA topoisomerase III, putative [Plasmodium chabaudi chabaudi]
Length = 675
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 254/660 (38%), Positives = 373/660 (56%), Gaps = 74/660 (11%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
GR I VLNVAEKPSVA ++ ILSK + + + N ++ F+Y + + M +TSV
Sbjct: 2 GR-IKVLNVAEKPSVASAIVSILSKGKSNKKKSYSKY-NPVFTFDYKMENETWSMFVTSV 59
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
TGHL + FDE+Y+ W++ DP +L+ A + ++ +DKK I+ L++ ++ C L+LWLDC
Sbjct: 60 TGHLTDQKFDEKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLILWLDC 119
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I FEVI C N L + RA+FSA+ +++I A+ NL PN+ A +VD R+E
Sbjct: 120 DREGEHICFEVINACSVTNKKLKIHRAQFSAVTEKDIKYAINNLKSPNKNLAQSVDVRRE 179
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER----------- 233
IDLR+G+ FTRF T+ + V +D ++ SYGPCQFPTLGFVV R
Sbjct: 180 IDLRMGSIFTRFMTIR----YFKLVQNDTKII-SYGPCQFPTLGFVVNRYLQIKNFNNEY 234
Query: 234 YWEIQ---------AHESEEFW--------------------TINCS--HKSEEG----- 257
YW I+ + S F NCS + S++
Sbjct: 235 YWTIKMGYLYQDKDGNNSNLFLDNIGKNKKGREKKKKKKGKKKKNCSDYYSSDDDENNSY 294
Query: 258 -------------TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
F+W R LFD+ V+IYE ++ P ++ + ++E KY P+P
Sbjct: 295 GRDNRPDSSNTNYVVDFTWSRLKLFDHLGVVLIYEDLLKNPLCRISNIFEKEVKKYRPFP 354
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+++ K S+YF +SS+ M +AE LY G+ISYPRTET+ F NL + E +
Sbjct: 355 LNTLQMTKLVSKYFHISSKECMNIAEKLYNKGYISYPRTETNYFVDSMNLRKFIHELKKN 414
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
+G YA +L ++ + P G +DKAHPPIHP K + + +K+YE + RH
Sbjct: 415 NIFGSYAAKLAENGSC---KPRKGKLNDKAHPPIHPVKNMNKANNVDFKEWKIYEFICRH 471
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLA S A+G +T V NI E F G I KNYL++Y +E W ++P + +F
Sbjct: 472 FLAVCSDDAIGFDTKVVANIGAEQFYCKGLKIKNKNYLEIYIYEKWNDKILPPFQINDEF 531
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
P +L ++ G+T+ P LSE+DLLS MDK GIGTDATMH+HI+ + R Y K++ F
Sbjct: 532 YPYSLIVEEGITQ-PKYLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVYKNSKNLFI 590
Query: 545 PTNIGEALVMGY---DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G AL++ Y D+G +L +P+LR+ ME DM V+ G K K +++ N + MK +
Sbjct: 591 PTKLGIALILSYKKFKDIGVDLTEPSLRAKMERDMFLVASGEKGKNEIIRNYIDIMKYIY 650
>gi|451997773|gb|EMD90238.1| hypothetical protein COCHEDRAFT_1104554 [Cochliobolus
heterostrophus C5]
Length = 669
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/531 (43%), Positives = 334/531 (62%), Gaps = 8/531 (1%)
Query: 8 INVLNVAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+ VL VAEKPS+AK+VAG L + + +R + N ++F +S GQ C + T V G
Sbjct: 2 MRVLCVAEKPSIAKAVAGHLGGQARAESVRGIQWVKNYKFDFRFSNWGQ-CSVTFTCVAG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H++ DF +RY+KWHSC P L+ AP+ + EDKK + +E +AR L +W DCDR
Sbjct: 61 HIVAQDFTDRYKKWHSCQPVSLFEAPIVSGIAEDKKAVASNIETQARYASILFIWTDCDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I E+ ++ N ++ + RARFS + + QA QN + ++ A AV AR E+D
Sbjct: 121 EGEHIGTEIRDIALKANPNMQVWRARFSNIERAHVIQASQNPIRLDEAQAQAVSARIELD 180
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+GA+FTR QT+ L+N I ++R ++SYG CQFPTLGFVV+RY ++ E FW
Sbjct: 181 LRLGAAFTRMQTLALQNM-IPQQGEERGKLISYGSCQFPTLGFVVDRYLRVRNFVPEPFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I +H+ + F+W RGHLFD + ++I E C+ TATVTK+ ++ K+ P PL+
Sbjct: 240 YIKVAHEKDGIDVKFNWRRGHLFDRMAVILIMERCLLSKTATVTKMAKKASKKWKPLPLT 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K SR+ RM+S+ MKVAE+LY G+ISYPRTETD F G +L +V Q
Sbjct: 300 TVELQKNGSRFLRMTSQDVMKVAEELYTKGWISYPRTETDQFDRGMDLRTLVGRQTQDGR 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WGP+AQ L++ G ++ P SG ++DKAHPPIHP + + ++ ++ +YE VVR FL
Sbjct: 360 WGPFAQNLMN---GGFQQPRSGRNNDKAHPPIHPVNYVA-PTQLNERERAVYEFVVRRFL 415
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFI 485
AC S+ AVG T +EI GEVF G ++A+NYLDVY ++ W +P Y G++
Sbjct: 416 ACCSEDAVGEATDIEIEYGGEVFHAHGLRVIARNYLDVYPYDKWESSQALPQYAVGEELK 475
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
PT + + G T P L+E +L++ MD GIGTDATM +HI K+ +R Y I
Sbjct: 476 PTEVNMVDGQTTAPSYLTEPELIALMDANGIGTDATMAEHIAKIKEREYVI 526
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ GYD++G+E L KP LR ME MK + G ++ DV+ L Q +A
Sbjct: 585 FIPTTLGVALIEGYDNVGFETSLSKPFLRKQMEEQMKAICEGRSTRNDVVQQNLDQYRAV 644
Query: 601 F 601
F
Sbjct: 645 F 645
>gi|119498155|ref|XP_001265835.1| DNA topoisomerase III, putative [Neosartorya fischeri NRRL 181]
gi|119413999|gb|EAW23938.1| DNA topoisomerase III, putative [Neosartorya fischeri NRRL 181]
Length = 571
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/568 (42%), Positives = 341/568 (60%), Gaps = 23/568 (4%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV GHLM LDF+ +Y+ W SC P L+ APVR+ V EDKK I + ++E+AR + L +
Sbjct: 1 MTSVLGHLMALDFESQYKSWLSCPPGALFEAPVREFVEEDKKPIAENIKEQARMSRALFI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
W DCDREGE+I EV + + N ++++RARFS + +A + L+D ++ A+AV
Sbjct: 61 WTDCDREGEHIGTEVRKKAKEGNQRILVKRARFSNTERAHVLRAARALIDVDENQANAVA 120
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
AR E+DLRIGA+FTR Q++ L+ D N ++SYG CQFPTLGFVV+RY ++
Sbjct: 121 ARIELDLRIGAAFTRLQSLQLQRM----CADLANKLISYGSCQFPTLGFVVDRYLRVKNF 176
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+ E FW I H E F W R HLFD + ++ E C+ TA VTKV Q+ K+
Sbjct: 177 KPETFWGIKVVHVQERKKVNFLWRRVHLFDRAAVTVMLERCLLAKTAKVTKVNQKPTSKW 236
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T++L+ SRY RM S MK AE LY G+ISYPRTETD F G +L ++++
Sbjct: 237 RPLPLTTVDLQMMGSRYLRMDSSAVMKAAESLYTKGYISYPRTETDQFDKGIDLKKLIEK 296
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q +WG YA+ L++ G ++ P SG H+D+AHPPIHP + S S + D K+YE
Sbjct: 297 QYPDTNWGEYARGLIN---GAFKTPRSGRHNDRAHPPIHPVCWVS-PSALNSDEKKVYEF 352
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYV 479
VVR FLAC S A G T +EI E F +G V+L KNYL+VY ++ W +P +
Sbjct: 353 VVRRFLACCSDDAKGQSTEIEIQYGDEKFHANGLVVLEKNYLEVYVYDKWESSQQLPNFR 412
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--- 536
G+ F+PT + G T P L+E +L+ MD GIGTDATM +HI K+ +R Y
Sbjct: 413 VGEVFVPTEANMFEGKTTAPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAVHS 472
Query: 537 ----KDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSK 586
++A F PT +G ALV GYD++ L KP LR ME M+E+ G+KS+
Sbjct: 473 RGSGRNAVKEFIPTRLGIALVEGYDNVVANLPDKPSLSKPFLRKEMELRMREICAGSKSR 532
Query: 587 ADVLANCLQQMKACFLDARLKKVKLLEA 614
+V+ L + F+ + +++ +L+A
Sbjct: 533 QEVVQESLDMYREVFIHTQ-RRIDMLKA 559
>gi|242220541|ref|XP_002476035.1| predicted protein [Postia placenta Mad-698-R]
gi|220724723|gb|EED78746.1| predicted protein [Postia placenta Mad-698-R]
Length = 707
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/621 (40%), Positives = 368/621 (59%), Gaps = 44/621 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPSVAK++ ILS Q R+ +Y K Y+FNY +T+VTGH
Sbjct: 1 MRVLCVAEKPSVAKNITQILSGGQ-FTTRQTGCKYIKNYDFNYPQTN--SLFTVTAVTGH 57
Query: 68 LMELDFDERYRKWHSCDP-ADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+M+ +F Y KW SCDP A L + P+ +K +AR Q L++W DCDR
Sbjct: 58 VMDHEFHYMYSKWTSCDPFALLSEEGSHSNRPKPQK------RSQAR--QTLMIWTDCDR 109
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI E+ +C + ++ +RRARFSA+I ++IH A Q+ V + A+AV+AR +D
Sbjct: 110 EGENIGAEIAGICTEAHRNISIRRARFSAIIPQQIHNAAQHPVQLDTAQANAVEARILLD 169
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG++FTR QT+ L+ + + D V+SYGPCQFPTLGFVV RY ++++ E FW
Sbjct: 170 LRIGSAFTRLQTLNLQQ-RFEVLKD----VISYGPCQFPTLGFVVSRYNQVKSFVPETFW 224
Query: 247 TINCS------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
I S +E F+W RGHLFD A+++YE + P A + KV ++ K+
Sbjct: 225 YIYLSLSRPSSTDRDEDETIFTWRRGHLFDLHFAMVLYESVLAVPRARIVKVTSKDTKKW 284
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PYPL+T++L+K SR R+S + + +AE LYQ GF+SYPRTETD F + ++Q+
Sbjct: 285 KPYPLTTVDLQKVGSRLLRISPKKILDIAEHLYQQGFLSYPRTETDRFDPQFDFMTLLQK 344
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q P WGP+A G DDKAHPPIHPT ++ + D ++YE
Sbjct: 345 QTVDPAWGPFAHM-------------QGKKDDKAHPPIHPTAYAGN---LAGDEKRVYEY 388
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
+ R FLAC S+ A+G +T V++ GE F +G + +NYL+V+ ++ W +P +
Sbjct: 389 ITRRFLACCSKDALGWQTTVDVEYGGEEFYATGLTVRERNYLEVFPYDKWSDKELPHFTQ 448
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--D 538
G+QF+PT L G T P LL+E+DL+S MDK GIGTDAT+ HI+ ++DR Y I+
Sbjct: 449 GEQFVPTVCELREGQTTRPALLTESDLVSMMDKNGIGTDATIAQHIQTIIDRNYVIERMQ 508
Query: 539 ANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+T++ P+ +G LV GYD MG+E L +P LR E M E+ G ++KAD+L ++
Sbjct: 509 GSTKYLVPSTLGIGLVEGYDAMGFERSLSRPQLRRETERRMVEICEGTRTKADMLTESVE 568
Query: 596 QMKACFLDARLKKVKLLEAMG 616
Q K ++ + + +L+ +G
Sbjct: 569 QYKEIYMRTKQEFERLVNCVG 589
>gi|453089198|gb|EMF17238.1| DNA topoisomerase [Mycosphaerella populorum SO2202]
Length = 679
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 264/671 (39%), Positives = 365/671 (54%), Gaps = 72/671 (10%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTGH 67
VL VAEKPS+AK+VA L Q ++Y K YEF ++ G PC + MTSV GH
Sbjct: 5 KVLCVAEKPSIAKAVATHLGGGQFQTHSIAGNQYVKNYEFGFTFPGWGPCEVTMTSVLGH 64
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LME DF Y+ W S DP+ L+ AP+ V + K + K +E +AR +L +W DCDRE
Sbjct: 65 LMEQDFSAEYKNWRSRDPSALFDAPIETFVADKMKGVAKNIETKARSAHYLYIWTDCDRE 124
Query: 128 GENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GE+I E+ E N L + RARFS + + A + V ++ A+AV AR
Sbjct: 125 GEHIGAEIRECAFKTNARLRSAGKVVRARFSNVERNHVIDAARRPVALDEAQANAVYART 184
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIGA FTR T+ L+ + + ++SYG CQFPTLGFVVERY ++ E
Sbjct: 185 ELDLRIGACFTRRLTISLQPMLPGAAEAKK--IISYGSCQFPTLGFVVERYMRVRNFVPE 242
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW+I +H E+ +F+W R HLFD AVI+YE C+Q ATVTKV+ K+ P
Sbjct: 243 TFWSIKVTHTKEDAKVSFNWARKHLFDRMIAVILYEQCIQARHATVTKVQTMPTSKWRPL 302
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI- 362
PL+T+EL+K +SR+ RM S+ M +AE LYQ GFISYPRTETD F +L ++Q Q
Sbjct: 303 PLTTVELQKCSSRFLRMDSQRVMGIAESLYQKGFISYPRTETDQFDRNMDLRQLIQNQAQ 362
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
W +AQ LL + ++ P +G H+DKAHPPIHP F G S + ++YE +
Sbjct: 363 NQSRWSQHAQGLLSNG---FQWPRAGRHNDKAHPPIHPVNF-LGPSALDAESQRVYEFIT 418
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S A G++T + I E FS SG +L +NYLDVY ++ W V+P + G
Sbjct: 419 RRFLACCSDDAKGSKTEITIAYGPETFSASGLTVLERNYLDVYPYDKWTSSQVLPEFREG 478
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA------ 535
+ F+PT L G T PP L+E +L++ MD GIGTDATM +HI K+ +R Y
Sbjct: 479 EVFVPTEALLHEGKTSPPGYLTEPELIALMDTNGIGTDATMAEHIAKIKEREYVQTRPRA 538
Query: 536 -----IKDANT---------------------------------------------RFAP 545
++DA + F P
Sbjct: 539 RQQRDVEDAASDEDSDGAAPVERGRGRGRGRGRGGRGRAGRGGASRRVGGSTAGVEEFIP 598
Query: 546 TNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
T +G ALV GY+ MG+E + KP LR ME MK + +K+ V+ ++Q +A +
Sbjct: 599 TTLGVALVEGYESMGHEISMAKPFLRKQMELKMKAICESRTTKSAVIHEMVEQYRATYTR 658
Query: 604 ARLKKVKLLEA 614
++ + LL+A
Sbjct: 659 T-VQGMNLLQA 668
>gi|358391864|gb|EHK41268.1| hypothetical protein TRIATDRAFT_249816 [Trichoderma atroviride IMI
206040]
Length = 663
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/530 (44%), Positives = 327/530 (61%), Gaps = 15/530 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEKPS++K+VAG LS R++Y K Y F++ Q + MT VT
Sbjct: 1 MRVLCVAEKPSISKAVAGHLSGG-SFATHNTRNKYIKNYSFDFDFGQQWGSSSVTMTCVT 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL ++F Y+ W P L+ AP+ V DKKDI K + ++A+ + LV+W DCD
Sbjct: 60 GHLTNVEFTNEYKNWSHPPPESLFTAPI---VKNDKKDIAKNIADQAKYARLLVIWTDCD 116
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E+++ + N + ++RARFS + + A + L++ ++ +AV AR E+
Sbjct: 117 REGEHIGQEIVDAAKVGNAAIQVKRARFSNVERAHVLTAARRLIELDEKQVNAVSARIEL 176
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T LK H+ + LVLSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 177 DLRIGYAFTRFITNNLK--HLGGPLAE--LVLSYGSCQFPTLGFVVDRYFRVKNFVPEPF 232
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I+ +H + FSW R LFD +AV++YE C+ A VTKV+++ K+ P PL
Sbjct: 233 WGISLTHNKDGKQVRFSWARNRLFDRMTAVLLYERCLDAKKAKVTKVQEKPTRKFKPLPL 292
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R RMS + M +AE LY GFISYPRTETD F G NL +VQ+Q
Sbjct: 293 TTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMNLRALVQKQTTDQ 352
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WGP+AQ L++ G ++ P G HDDKAHPPIHP + S S D +LYE V R F
Sbjct: 353 RWGPFAQGLVN---GGFQQPREGRHDDKAHPPIHPIAHVA-PSVLSHDEGRLYEYVTRRF 408
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LAC S+ A G T +E+ + E FST G ++L +NYLDVY +E+W +P + G+QF
Sbjct: 409 LACCSEDAKGMATDIELQLGDEYFSTRGVIVLERNYLDVYVYENWNNSTELPKFTVGEQF 468
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ DR Y
Sbjct: 469 EPTEAMMTEGKTSPPNYLTEADLIALMDANGIGTDATMAEHIQKIQDREY 518
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL++G+D M +E L KP LR ME MK + G+ ++ VL + Q K
Sbjct: 578 FVPTQLGVALILGFDRMSFEMSLGKPFLRKEMELQMKAICEGSTTRRAVLEQSIAQYKQV 637
Query: 601 FLDAR 605
FL ++
Sbjct: 638 FLQSQ 642
>gi|451847298|gb|EMD60606.1| hypothetical protein COCSADRAFT_163916 [Cochliobolus sativus
ND90Pr]
Length = 667
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/529 (44%), Positives = 334/529 (63%), Gaps = 8/529 (1%)
Query: 10 VLNVAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+AK+VAG L + + +R + N ++F ++ GQ C + T V GH+
Sbjct: 4 VLCVAEKPSIAKAVAGHLGGQARAESVRGIQWVKNYKFDFRFNNWGQ-CSVTFTCVAGHI 62
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF++RY+KWHSC P L+ AP+ + EDKK + +E +AR L +W DCDREG
Sbjct: 63 VAQDFNDRYKKWHSCQPVSLFEAPIVSGIAEDKKVVASNIETQARYASILFIWTDCDREG 122
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E+I E+ ++ N ++ + RARFS + + QA QN + ++ A AV AR E+DLR
Sbjct: 123 EHIGTEIRDIALKANPNMQVWRARFSNIERAHVIQASQNPIRLDEAQAQAVSARIELDLR 182
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
+GA+FTR QT+ L+N I ++R ++SYG CQFPTLGFVV+RY ++ E FW I
Sbjct: 183 LGAAFTRMQTLALQNM-IPQQGEERGKLISYGSCQFPTLGFVVDRYLRVRNFVPEPFWYI 241
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H+ + F+W RGHLFD + V+I E C+ TATVTK+ ++ K+ P PL+T+
Sbjct: 242 KVAHEKDSIDVKFNWRRGHLFDRMAVVLIMERCLLSKTATVTKMAKKPTKKWKPLPLTTV 301
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
EL+K S++ RM+S+ MKVAEDLY G+ISYPRTETD F G +L +V Q WG
Sbjct: 302 ELQKNGSKFLRMTSQDVMKVAEDLYTKGWISYPRTETDQFDRGMDLRMLVGRQTQDGRWG 361
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
P+AQ L++ G ++ P +G ++DKAHPPIHP + + ++ + +YE VVR FLAC
Sbjct: 362 PFAQNLMN---GGFQQPRAGRNNDKAHPPIHPVNYVA-PTQLNDRERVVYEFVVRRFLAC 417
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIPT 487
S+ AVG T +EI GEVF G ++A+NYLDVY ++ W V+P Y G++ PT
Sbjct: 418 CSEDAVGEATDIEIEYGGEVFHAHGLRVIARNYLDVYPYDKWESSQVLPQYAVGERLEPT 477
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
+ + G T P L+E +L++ MD GIGTDATM +HI K+ +R Y I
Sbjct: 478 EVNMVDGQTTAPSYLTEPELIALMDANGIGTDATMAEHIAKIKEREYVI 526
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ GYD++G+E L KP LR ME MK + G ++ DV+ L+Q +A
Sbjct: 583 FIPTTLGVALIEGYDNVGFETSLSKPFLRKQMEEQMKAICEGRSTRNDVVQQNLEQYRAV 642
Query: 601 F 601
F
Sbjct: 643 F 643
>gi|56900852|gb|AAW31721.1| DNA topoisomerase III alpha [Trypanosoma cruzi]
Length = 921
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 274/696 (39%), Positives = 391/696 (56%), Gaps = 33/696 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK ++ +LS N R+ SR+N ++EF++ + ML TSV GHLM
Sbjct: 5 LNVAEKPSVAKELSLVLS-NGTCRMGNSLSRFNPVFEFDFEGK----QMLCTSVAGHLMN 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+F R W + +L+ A + KHV + + +KK LE RR LVLW+DCDREGEN
Sbjct: 60 DEFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRSSNLVLWMDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V + VN + + RA FSAL R++ AV++L PN+ +DAV+ARQEIDLRIG
Sbjct: 120 ICFEVMQVVQGVNRSISIFRAHFSALTRRDLLSAVRSLKAPNKALSDAVEARQEIDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A F+RFQT+ ++ VLS+GPCQ PTLGFVV R+ E + E+F+T+
Sbjct: 180 AVFSRFQTIKFRD-----AFSGMPRVLSFGPCQIPTLGFVVRRHREREGFVQEDFFTLVM 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE----PTATVTKVRQQEKLKYPPYPLS 306
H G F RG +FD +A ++ E ++ A V V ++ ++PP PL+
Sbjct: 235 RH----GQTVFHGCRGSVFDQLAATLVLETMLESAGPNAEALVVDVVRRPTRRHPPVPLA 290
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGHP 365
T+ L+K A+ + +SSE M AE LYQ GFISYPRTETDSFS + L I Q +P
Sbjct: 291 TVALQKLAATHLHISSEQCMTWAESLYQEGFISYPRTETDSFSFTDDELREIAGVQRDNP 350
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+ Y +LD ++ +R P GGHDDKAHPPI+PTK + + LY L+VRHF
Sbjct: 351 EVADYVGAMLDDSSHKFRRPLKGGHDDKAHPPIYPTKLMRAK---HDNRSALYNLIVRHF 407
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC+S AV A T V E F+TSG IL K +L+VY +E W +P Y G++F+
Sbjct: 408 LACLSPDAVAATTAVTAVFGEEKFTTSGTAILEKGWLEVYPYERWHSTCLPAYQQGERFV 467
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
P ++L+ T PPP L+E L++ MD+ GIGTDAT+ HIK +LDR Y +K + P
Sbjct: 468 PKDISLEKHRTTPPPHLTETALIALMDEHGIGTDATIAQHIKTVLDRGY-VKREGSFLVP 526
Query: 546 TNIGEALVMGYDDMG-YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
T +G AL Y+ +G L +P LR+ ME M ++ G SKA V+ ++ F
Sbjct: 527 TALGIALASAYEVIGLLSLLQPQLRAQMELAMSDIVSGKASKAQVVDAAVKLYTEVFQKL 586
Query: 605 RLKKVKLLEAMGIFFE---RWSGGEDQQAAGEVVRQ----CGICQESNMVLKKSRDGNLM 657
L ++ E + + G G + ++ CG+C+ + M L + +G
Sbjct: 587 SLGSKEMYEELCCHLSPAAPQTSGTHAYGTGRIEKRRLVHCGVCK-NPMDLIEQTEGERD 645
Query: 658 VGCLAFPQCRNAVWLP-GSVSEAAVTTNTCNSCTPG 692
C+ C +P G +++ + +C C G
Sbjct: 646 TWCVRCHTCLKDYRVPNGRLNQLSSCGQSCILCGFG 681
>gi|71651605|ref|XP_814477.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70879452|gb|EAN92626.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 921
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 274/696 (39%), Positives = 391/696 (56%), Gaps = 33/696 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK ++ +LS N R+ SR+N ++EF++ + ML TSV GHLM
Sbjct: 5 LNVAEKPSVAKELSLVLS-NGTCRMGNSLSRFNPVFEFDFEGK----QMLCTSVAGHLMN 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+F R W + +L+ A + KHV + + +KK LE RR LVLW+DCDREGEN
Sbjct: 60 DEFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRSSNLVLWMDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V + VN + + RA FSAL R++ AV++L PN+ +DAV+ARQEIDLRIG
Sbjct: 120 ICFEVMQVVQGVNRSISIFRAHFSALTRRDLLSAVRSLKAPNKALSDAVEARQEIDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A F+RFQT+ ++ VLS+GPCQ PTLGFVV R+ E + E+F+T+
Sbjct: 180 AVFSRFQTIKFRD-----AFSGMPRVLSFGPCQIPTLGFVVRRHREREGFVQEDFFTLVM 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE----PTATVTKVRQQEKLKYPPYPLS 306
H G F RG +FD +A ++ E ++ A V V ++ ++PP PL+
Sbjct: 235 RH----GQTVFHGCRGSVFDQLAATLVLETMLESAGPNAEALVVDVVRRPTRRHPPVPLA 290
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGHP 365
T+ L+K A+ + +SSE M AE LYQ GFISYPRTETDSFS + L I Q +P
Sbjct: 291 TVALQKLAATHLHISSEQCMTWAESLYQEGFISYPRTETDSFSFTDDELREIAGVQRENP 350
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+ Y +LD ++ +R P GGHDDKAHPPI+PTK + + LY L+VRHF
Sbjct: 351 EVADYVGAMLDDSSHKFRRPLKGGHDDKAHPPIYPTKLMRAK---HDNRSALYNLIVRHF 407
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC+S AV A T V E F+TSG IL K +L+VY +E W +P Y G++F+
Sbjct: 408 LACLSPDAVAATTAVTAVFGEEKFTTSGTAILEKGWLEVYPYERWHSTCLPAYQQGERFV 467
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
P ++L+ T PPP L+E L++ MD+ GIGTDAT+ HIK +LDR Y +K + P
Sbjct: 468 PKDISLEKHRTTPPPHLTETALIALMDEHGIGTDATIAQHIKTVLDRGY-VKREGSFLVP 526
Query: 546 TNIGEALVMGYDDMG-YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
T +G AL Y+ +G L +P LR+ ME M ++ G SKA V+ ++ F
Sbjct: 527 TALGIALASAYEVIGLLSLLQPQLRAQMELAMSDIVSGKASKAQVVDAAVKLYTEVFQKL 586
Query: 605 RLKKVKLLEAMGIFFE---RWSGGEDQQAAGEVVRQ----CGICQESNMVLKKSRDGNLM 657
L ++ E + + G G + ++ CG+C+ + M L + +G
Sbjct: 587 SLGSKEMYEELCCHLSPAAPQTSGTHAYGTGRIEKRRLVHCGVCK-NPMDLIEQTEGERD 645
Query: 658 VGCLAFPQCRNAVWLP-GSVSEAAVTTNTCNSCTPG 692
C+ C +P G +++ + +C C G
Sbjct: 646 TWCVRCHTCLKDYRVPNGRLNQLSSCGQSCILCGFG 681
>gi|389632279|ref|XP_003713792.1| DNA topoisomerase III [Magnaporthe oryzae 70-15]
gi|351646125|gb|EHA53985.1| DNA topoisomerase III [Magnaporthe oryzae 70-15]
Length = 669
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/532 (44%), Positives = 331/532 (62%), Gaps = 15/532 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKPS++K+VAG LS Q + R +Y K Y F Y G P C + MT VTG
Sbjct: 4 ILCVAEKPSISKAVAGHLSGGQ-FQTHNTRVQYIKNYSFTYDF-GHPWGNCEVTMTCVTG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL E+ F ++ W+ P L+ AP+ V DKK I + + +A+ + L +W DCDR
Sbjct: 62 HLTEVQFGPDFKDWNRPTPDHLFSAPLHTQVSNDKKAIAENIRHQAQYARALFIWTDCDR 121
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I E+ E R + ++RARFS + I QA +N V+ + AV AR E+D
Sbjct: 122 EGEHIGGEIREEARKGKPGIEVKRARFSNIERAHILQAARNPVNLDDMQVAAVAARIELD 181
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRF T+ L++ + ++LVLSYG CQFPTLGFVV+RY+ ++ E FW
Sbjct: 182 LRIGYAFTRFLTINLRSLN----GPLKDLVLSYGSCQFPTLGFVVDRYFRVKNFVPETFW 237
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I S K + T F+W RG LFD S VI+YE C++ TATV KV+++ K+ P PL+
Sbjct: 238 SIKLSIKKDGKTGNFTWTRGRLFDRASVVILYERCIEAKTATVIKVQEKPTRKWKPLPLT 297
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K A+++ R+S + TM++AE LYQ GFISYPRTETD F G NL +VQ+Q
Sbjct: 298 TVELQKMATKFIRISGQQTMEIAEKLYQKGFISYPRTETDRFDKGMNLRTLVQKQTQDGR 357
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE--SRWSQDHYKLYELVVRH 424
WGP+AQ L+D G ++ P +G HDDKAHPPIHP +++G S + ++YEL+VR
Sbjct: 358 WGPFAQGLVD---GGFQQPRNGRHDDKAHPPIHPITYATGAALSEIGAEAGRVYELIVRR 414
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQ 483
FLAC S+ A G T +++ E F G V++ +NYLDVY +E+W +P G+Q
Sbjct: 415 FLACCSEDAQGMATDIDVTYGPETFHAHGVVVIERNYLDVYPYENWNNSAELPRLTVGEQ 474
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
PT + G T+ P L+EADL++ MD GIGTDATM +HI+ + R YA
Sbjct: 475 ISPTEAMMTEGKTQAPSYLTEADLIALMDANGIGTDATMAEHIQTIQTRQYA 526
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ G+D M +E L KP LR ME++MK + G +K VL ++Q +
Sbjct: 589 FVPTQLGVALIEGFDRMNFEMSLGKPFLRREMEANMKAICEGRATKDGVLEESIRQYRHV 648
Query: 601 F 601
+
Sbjct: 649 Y 649
>gi|71654804|ref|XP_816014.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70881114|gb|EAN94163.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 921
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 273/696 (39%), Positives = 390/696 (56%), Gaps = 33/696 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK ++ +LS N ++ SR+N ++EF++ + ML TSV GHLM
Sbjct: 5 LNVAEKPSVAKELSLVLS-NGTCKMGNSLSRFNPVFEFDFEGK----QMLCTSVAGHLMN 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+F R W + +L+ A + KHV + + +KK LE RR LVLW+DCDREGEN
Sbjct: 60 DEFPPETRSWQNYPLVNLFTASITKHVKPEMEPVKKNLEALGRRASNLVLWMDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEV++V + VN + + RA FSAL R++ AV++L PN+ +DAV+ARQEIDLRIG
Sbjct: 120 ICFEVMQVVQGVNRSISICRAHFSALTRRDLLSAVRSLKAPNKALSDAVEARQEIDLRIG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A F+RFQT+ ++ VLS+GPCQ PTLGFVV R+ E + E+F+T+
Sbjct: 180 AVFSRFQTIKFRD-----AFSGMPRVLSFGPCQIPTLGFVVRRHREREGFVQEDFFTLVM 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE----PTATVTKVRQQEKLKYPPYPLS 306
H G F RG +FD +A ++ E ++ A V V ++ ++PP PL+
Sbjct: 235 RH----GQTVFHGCRGSVFDQLAATLVLETMLESAGPNAEALVVDVVRRPTRRHPPVPLA 290
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGHP 365
T+ L+K A+ + +SSE M AE LYQ GFISYPRTETDSFS + L I Q +P
Sbjct: 291 TVALQKLAATHLHISSEQCMTWAESLYQEGFISYPRTETDSFSFTDDELREIAGVQRDNP 350
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+ Y +LD ++ +R P GGHDDKAHPPI+PTK + LY L+VRHF
Sbjct: 351 EVADYVGAMLDDSSNKFRRPLKGGHDDKAHPPIYPTKLMPAR---HDNRSALYNLIVRHF 407
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LAC+S AV A T V E F+TSG IL K +L+VY +E W +P Y G++F+
Sbjct: 408 LACLSPDAVAATTAVTAVFGEEKFTTSGTAILEKGWLEVYPYERWHSTCLPAYQQGERFV 467
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
P ++L+ T PPP L+E L++ MD+ GIGTDAT+ HIK +LDR Y +K + P
Sbjct: 468 PKDISLEKHRTTPPPHLTETALIALMDEHGIGTDATIAQHIKTVLDRGY-VKREGSFLVP 526
Query: 546 TNIGEALVMGYDDMG-YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
T +G AL Y+ +G L +P LR+ ME M ++ G SKA V+ ++ F
Sbjct: 527 TALGIALASAYEVIGLLSLLQPQLRAQMELAMSDIVSGKASKAQVVDAAVKLYTEVFQKL 586
Query: 605 RLKKVKLLEAMGIFFE---RWSGGEDQQAAGEVVRQ----CGICQESNMVLKKSRDGNLM 657
L ++ E + + G G + ++ CG+C+ + M L + +G
Sbjct: 587 SLGSKEMYEELCCHLSPAAPQTSGTHAYGTGRIEKRRLVHCGVCK-NPMDLIEQTEGERD 645
Query: 658 VGCLAFPQCRNAVWLP-GSVSEAAVTTNTCNSCTPG 692
C+ C +P G +++ + +C C G
Sbjct: 646 TWCVRCHTCLKDYRVPNGRLNQLSSCGQSCILCGFG 681
>gi|353239154|emb|CCA71076.1| related to DNA topoisomerase III alpha [Piriformospora indica DSM
11827]
Length = 632
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/558 (42%), Positives = 346/558 (62%), Gaps = 22/558 (3%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
+T V GH+ ELDF E +RKW+SCDP L+ APV P+ ++ + +E AR L++
Sbjct: 20 VTYVAGHITELDFPETHRKWNSCDPFTLFDAPVEVKHPQRVNELVRNIEIRARGSDMLMI 79
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
W DCDREGE I +E+ +VC+ VN + ++RARFSA+I +IH+A QN + + ADAV
Sbjct: 80 WTDCDREGEYIGYEIAQVCQKVNRRIKIKRARFSAIIADQIHRAAQNPTNLDLAQADAVI 139
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
ARQ +DLR+GA+FTR Q M L+N ++ + + ++SYGPCQFPTLGFVV RY +++A
Sbjct: 140 ARQMLDLRLGAAFTRMQCMALQN-RFGNLLEGK--LVSYGPCQFPTLGFVVSRYEQVKAF 196
Query: 241 ESEEFWTINCS--------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKV 292
E FW I + + E F W RGHLFD+ A+++YEM ++ P ATV KV
Sbjct: 197 VPETFWYIYLALNRPGEQNGRGREDQTVFKWKRGHLFDFDVALMLYEMVLERPMATVKKV 256
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGT 352
++ K+ PYPL+T++L+K SR RMS++ + A+ LYQ G +SYPRTETD +
Sbjct: 257 VKKNTKKWKPYPLTTVDLQKSGSRLLRMSAKQILDTADALYQRGILSYPRTETDQYDDQF 316
Query: 353 NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ 412
+ +Q+Q P+WG +A RL G + P G +DKAHPPIHPT ++ +
Sbjct: 317 DFGQYIQKQTSSPEWGAFATRL---RQGEFSKPRKGKKNDKAHPPIHPTAYAGN---LAG 370
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG 472
+ K+YE V R FLA S+ A G +T + + + GE FS SG ++L +NYL+V+ ++ W
Sbjct: 371 NEKKVYEYVTRRFLASCSKDAEGFQTTITVAVNGEEFSASGLLVLERNYLEVFPYDKWSS 430
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+P + G++F+PT L G T P LL+EADL+S MDK GIGTDAT+ HI +++R
Sbjct: 431 HELPPFEEGEEFMPTICELREGETTRPSLLTEADLVSLMDKNGIGTDATIAQHINTIVER 490
Query: 533 FYAIK--DANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKA 587
Y ++ + NT++ P+ +G LV GY+ +G E L KP LR E M +V K+K
Sbjct: 491 EYVMERLEGNTKYLVPSTLGVGLVHGYNQIGLEKSLSKPQLRRETERSMVQVCDRIKTKD 550
Query: 588 DVLANCLQQMKACFLDAR 605
D+L ++Q K F+ AR
Sbjct: 551 DMLQESIEQYKEVFILAR 568
>gi|310791677|gb|EFQ27204.1| DNA topoisomerase [Glomerella graminicola M1.001]
Length = 664
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/532 (44%), Positives = 324/532 (60%), Gaps = 14/532 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSV 64
+ VL VAEKPS++K+VAG L+ + + RS+Y K Y F++ G P C + MT+V
Sbjct: 1 MKVLCVAEKPSISKAVAGHLA-GRNPEVHNTRSQYIKNYGFDFDF-GAPWGSCSVTMTAV 58
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL L+F + + W P L+ APV VP+DKK + + +E +AR CQ L++W DC
Sbjct: 59 LGHLTGLEFTDENKNWSHPPPESLFTAPVVTVVPQDKKTVAENIERQARYCQLLIIWTDC 118
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I E++ + N + ++RA FS + I A + L D +Q DAVDAR E
Sbjct: 119 DREGEHIGKEIVNAAKKGNNRIAVKRATFSNIERAHILTAARRLTDLDQKQVDAVDARIE 178
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRF T+ L+ + +R + SYG CQFPTLGFVV+RY+ +Q E+
Sbjct: 179 LDLRIGYAFTRFLTISLRP--LGGPLQERTI--SYGSCQFPTLGFVVDRYFRVQNFVPEQ 234
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW+I H E F+W R LFD S VI+YE C++ A VTKV+++ K+ P P
Sbjct: 235 FWSIKVMHSREGKKVNFNWSRNRLFDRMSVVILYERCIRAKKAKVTKVQEKPTRKWKPLP 294
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL+K A+R RMS + M +AE LY GFISYPRTETD F G +L +V++Q
Sbjct: 295 LTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGMDLKALVRKQTSD 354
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
WG +AQ LLD + P G HDDKAHPPIHP +++ + + D +LYE VVR
Sbjct: 355 NRWGEHAQGLLDSN---FHQPREGKHDDKAHPPIHPVTYAA-PTVLNPDEKQLYEYVVRR 410
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQ 483
FLAC S A G T VEI E F G V+L +NYLDV+ +E W +P + G+
Sbjct: 411 FLACCSDDAKGLATDVEILYGEETFHARGLVVLERNYLDVFVYEKWNDSAQLPQFTPGES 470
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
F PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ DR Y
Sbjct: 471 FQPTEAMMTDGKTSPPGYLTEADLIALMDANGIGTDATMAEHIQKIQDREYV 522
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ G+D M +E L KP LR ME+ MK + G +K VL L Q +
Sbjct: 582 FIPTQLGVALITGFDRMEFETSLGKPFLRKEMENKMKAICDGRMTKDAVLRESLGQYRQV 641
Query: 601 FLDARLKKVKLLEA 614
F D++ +++ +L+A
Sbjct: 642 FRDSQ-ERLNVLKA 654
>gi|440636754|gb|ELR06673.1| hypothetical protein GMDG_00290 [Geomyces destructans 20631-21]
Length = 659
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/630 (40%), Positives = 352/630 (55%), Gaps = 59/630 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKPS+AK+VAG L ++Y K Y+F ++ G P C++ MTSV G
Sbjct: 5 ILCVAEKPSIAKAVAGHLGGGSFATRNVTGAQYTKNYDFTFNF-GPPWGACNVTMTSVLG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL E+DF ++ W P L+ V V DK I + +E +AR + L +W DCDR
Sbjct: 64 HLTEVDFGPEFKDWRYPPPRKLFDGRVHVKVHNDKAAIARNIETQARNARILFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV E N + ++RA+FS + + A ++ +D + DAV R E+D
Sbjct: 124 EGEHIGNEVREQAVKGNSSIEVKRAKFSNIERVHVINAAKHPIDLDSRQVDAVATRIELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT+ L++ +SYG CQFPTLGFVV+RY ++Q E FW
Sbjct: 184 LRIGFAFTRFQTLSLQSLG----GPLGGAKISYGSCQFPTLGFVVDRYLKVQNFVPEPFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I +H + ATF W R LFD + I++E C+ VTKV+Q+ ++ P PL+
Sbjct: 240 SIKVTHTRDNIDATFHWNRNRLFDRAAVTILFERCLDAKVVKVTKVQQKPTNRWKPLPLT 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K ASR+ RM+S+ MKVAEDLY G ISYPRTETD F G NL +V++
Sbjct: 300 TVELQKMASRFLRMNSQTAMKVAEDLYNKGMISYPRTETDIFDKGMNLKSLVEKHTQDNR 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WGP+AQ L++ G + P +G +DDKAHPPIHP + + + D +LYE VVR FL
Sbjct: 360 WGPFAQNLVN---GGFHWPRAGRNDDKAHPPIHPIAAYNADR--NSDEGRLYEFVVRRFL 414
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC S+ A+G T +E+ E F G ++L +N+LDVY +E+W G ++P + G+QF P
Sbjct: 415 ACCSEDAIGTATDIELQYGPEAFHAHGVIVLERNFLDVYPYENWTGNMLPKFTLGEQFEP 474
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK----DANT- 541
TL G T P L+E DL++ MD GIGTDATM +HI K+ DR Y + D N
Sbjct: 475 KEATLTDGKTVSPGYLTEPDLIALMDANGIGTDATMAEHIAKIKDRGYVMTQSRGDGNVT 534
Query: 542 ---------------------------------------RFAPTNIGEALVMGYDDMGYE 562
F PT +G AL+ GYD++G+E
Sbjct: 535 VREDGASARGRGAGRGRGRGRGRGGAAAAESGRSSGGVEEFIPTTLGVALIEGYDNIGFE 594
Query: 563 --LWKPNLRSMMESDMKEVSVGNKSKADVL 590
L KP LR +E +K + G K+K +VL
Sbjct: 595 EKLSKPFLRKELELQLKAICDGTKTKNEVL 624
>gi|169622904|ref|XP_001804860.1| hypothetical protein SNOG_14677 [Phaeosphaeria nodorum SN15]
gi|160704874|gb|EAT77869.2| hypothetical protein SNOG_14677 [Phaeosphaeria nodorum SN15]
Length = 681
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 250/651 (38%), Positives = 364/651 (55%), Gaps = 84/651 (12%)
Query: 43 NKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPE--- 99
N ++F + GQ ++ T V GH++ DF +R+RKWHSC PADL+ AP++ + E
Sbjct: 18 NYKFDFRFQQWGQ-SNVTFTCVAGHIVAQDFPDRFRKWHSCQPADLFDAPIQSSIAEVRT 76
Query: 100 --------------DKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCH 145
DKK + +E +AR L +W DCDREGE+I E+ ++ VN +
Sbjct: 77 NARVPASSLTDKTQDKKIVASNIEAQARYASILFIWTDCDREGEHIGTEIRDIALKVNPN 136
Query: 146 LVLRRARFSAL---------ID-REIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTR 195
+ + RARFS + +D + QA QN + ++ A+AV AR E+DLR+GA+FTR
Sbjct: 137 MQVYRARFSNIERAWVILFPVDFNHVIQASQNPIRLDEAQANAVSARIELDLRLGAAFTR 196
Query: 196 FQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSE 255
QTM L+N I + D+R V+SYG CQFPTLGFVV+RY ++ E FW I +H +
Sbjct: 197 MQTMALQNM-IPTQGDERGKVISYGSCQFPTLGFVVDRYLRVRNFVPEPFWYIKVAHTKD 255
Query: 256 EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRAS 315
+ F+W RGHLFD + +II+E C+ TA V K+ ++ K+ P PL+T+EL+K S
Sbjct: 256 KIDVKFNWRRGHLFDRLAVIIIFERCLLAKTAKVMKMAKKPTKKWKPLPLTTVELQKNGS 315
Query: 316 RYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLL 375
R+ RM+S+ MKVAEDLY G+ISYPRTETD F G +L +V Q WG +AQ L+
Sbjct: 316 RFLRMTSQEVMKVAEDLYTKGWISYPRTETDQFDRGMDLRALVARQTQDNAWGQFAQSLM 375
Query: 376 DHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVG 435
D G ++ P G ++DKAHPPIHP + + ++ +Q+ ++YE VVR FLAC S+ A G
Sbjct: 376 D---GGFKQPRDGRNNDKAHPPIHPVNYVA-PTQLNQNEKRVYEFVVRRFLACCSEDAAG 431
Query: 436 AETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIPTTLTLDSG 494
T +EI+ GE F G ++A+NYL+VY ++ W +P Y G+ F PT + G
Sbjct: 432 EATDIEIDYGGEFFHAHGLTVIARNYLNVYPYDKWVSSQELPQYTVGETFEPTEANMHDG 491
Query: 495 VTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI------------------ 536
T P L+E +L++ MD GIGTDATM +HI K+ +R Y I
Sbjct: 492 QTSAPAYLTEPELIALMDANGIGTDATMAEHIAKVQEREYVIARPKGGGAPANNDDGGGR 551
Query: 537 --------------------------KDANT---RFAPTNIGEALVMGYDDMGYE--LWK 565
+ A T F PT +G AL+ GYD++G E L K
Sbjct: 552 GRGRGRGRGGARGGRGGRGGSAAQNERGATTGIQEFIPTTLGIALIEGYDNVGIETSLSK 611
Query: 566 PNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMG 616
P LR ME MK + G ++ +V+ ++Q +A F +++ +L++ G
Sbjct: 612 PFLRKEMEVQMKAICDGRTTRQEVVQQNIEQYRAVFTRT-AQQINVLKSTG 661
>gi|336469613|gb|EGO57775.1| hypothetical protein NEUTE1DRAFT_81659 [Neurospora tetrasperma FGSC
2508]
Length = 662
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/657 (39%), Positives = 365/657 (55%), Gaps = 63/657 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKPS+AK+VA LS + + R RY K Y F G P + MT+V G
Sbjct: 4 ILCVAEKPSIAKAVATHLSGG-SYQTHDTRDRYTKNYVFTCDF-GPPWGRSTVTMTAVRG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL +LDF + ++KW P L+ APV+ P D K I + +E +AR+ L +W DCDR
Sbjct: 62 HLTQLDFHQEFKKWEYPPPGRLFDAPVQTIYPHDMKTIAQNIENQARQADILYIWTDCDR 121
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I E+ E R ++ + RARFS + I A + V + A+AV AR E+D
Sbjct: 122 EGEHIGSEIREAARKGKRNIQVYRARFSNIERAHILSAARRPVALDDKQAEAVAARIELD 181
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG++FTRF T+ L+ ++ D L+LSYG CQFPTLGFVV+RY+ ++ E FW
Sbjct: 182 LRIGSAFTRFLTLSLRPLG-GAMAD---LLLSYGSCQFPTLGFVVDRYFRVRNFVPEPFW 237
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I H+ E F+W R LFD S +++YE C+ A VT+V++++ K+ P PL+
Sbjct: 238 SIKVMHEKEGVKVNFNWSRNRLFDRLSVLLLYERCLAAKIAKVTEVKEKQTKKWKPLPLT 297
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K A+R+ RM+ + M VAE LY GFISYPRTETD F G NL +VQ+Q
Sbjct: 298 TVELQKMATRFLRMTGQEAMTVAEKLYNKGFISYPRTETDRFDKGMNLRALVQKQTQDQR 357
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WGP+AQ L+D G ++ P G +DDKAHPPIHP +++ Q+ +LYE VVR FL
Sbjct: 358 WGPFAQNLVD---GAFQQPRQGRNDDKAHPPIHPITYAAPTVLDDQEK-RLYEFVVRRFL 413
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFI 485
AC S+ A GA T VEI E F G ++ +NYLDVY +E+W G +P + G+ F
Sbjct: 414 ACCSEDARGAATDVEITYGEEKFVAHGLIVHQRNYLDVYPYENWTGTAELPKFTVGETFE 473
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA---------- 535
PT + G T P L+EADL++ MD GIGTDATM HI+K+ +R Y
Sbjct: 474 PTEAMMTEGKTTAPSYLTEADLIALMDANGIGTDATMAQHIEKIKERQYVQVVERGGNGG 533
Query: 536 ------------------------------------IKDANTRFAPTNIGEALVMGYDDM 559
+ F PT++G AL+ G++ M
Sbjct: 534 GGNDEDDGAAGGARGGRGGRGGRGRGGGRGGRGGGGVGGGVKEFIPTSLGVALIEGFERM 593
Query: 560 GYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
+E L KP LR ME MK + G ++ +L + + + +R ++V LL+A
Sbjct: 594 NFETSLGKPFLRKEMELKMKAICEGRLTRDALLRESIASYRQVYDQSR-EEVNLLKA 649
>gi|299752369|ref|XP_001830882.2| hypothetical protein CC1G_02333 [Coprinopsis cinerea okayama7#130]
gi|298409801|gb|EAU90946.2| hypothetical protein CC1G_02333 [Coprinopsis cinerea okayama7#130]
Length = 929
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/618 (40%), Positives = 371/618 (60%), Gaps = 31/618 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS++KS+ ILS Q R Y K YEF+Y ++T VTGH
Sbjct: 1 MRVLCVAEKPSISKSITQILSGGQ-FRTTNTALGYIKNYEFDYP--QTRATFVVTCVTGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L DF E++R WHSCDP+ L+ A V+ VP+DKK I+ L+ +AR L++W DCDRE
Sbjct: 58 LTSTDFTEQHRGWHSCDPSALFDAEVQTFVPQDKKAIETNLKNQARYADMLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I EV+ VCR V ++ ++RARFSA+I ++IH+A Q+ V+ + ADAV+AR +DL
Sbjct: 118 GEHIGMEVVNVCRRVRPNIQVKRARFSAIIAQQIHRAAQHPVELDLRQADAVEARILLDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
+IGA+FTR QT+ L+N +T V+SYGPCQFPTLGFVV+RY ++Q E FW
Sbjct: 178 KIGAAFTRLQTLYLQN-RFQQITS----VVSYGPCQFPTLGFVVQRYLKVQDFRPETFWY 232
Query: 248 IN--CSHKSEEGTA---TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I+ + + ++G A FSW R H FDY A +Y + A V KV ++E K+ P
Sbjct: 233 IHLELNARDDDGHAQLVKFSWKRPHQFDYDVAHSLYARVLDNVRARVLKVVKKETKKWKP 292
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+K SR +M+ + + A F+SYPRTETD + + + ++ +Q
Sbjct: 293 LPLTTVELQKAGSRLLKMAPKKIL-------DARFLSYPRTETDQYDNQFDFMTLINKQT 345
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG +A+RL G + P G ++DKAHPPIHPT + + D ++YE +
Sbjct: 346 ADNAWGDFARRL---QQGGFNAPRKGKNNDKAHPPIHPTAHA---GHLTGDEKRVYEYIT 399
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R FLA S+ A G +T VE+ GE F+ +G I+A+NYL+V+ ++ W +P + GQ
Sbjct: 400 RRFLASCSEDARGNQTTVEVVCGGEEFTATGLGIIARNYLEVFPYDKWAEHELPNFEEGQ 459
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--DAN 540
+F PT L G T P L+EADL++ MDK GIGTDAT+ HI+ ++ R Y I+ + +
Sbjct: 460 EFNPTLCELREGQTTAPNYLTEADLVALMDKNGIGTDATIAQHIETIIQREYVIERMEGS 519
Query: 541 TRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
T++ P+ +G L+ GY+++G E + KP LR E M +V G +K +L L+Q
Sbjct: 520 TKYLIPSTLGIGLIEGYNNIGLEKSVSKPVLRRETERRMVQVCEGATTKQQMLQASLEQY 579
Query: 598 KACFLDARLKKVKLLEAM 615
K + R + K+ E++
Sbjct: 580 KEMYEITRRELAKVEESV 597
>gi|440475801|gb|ELQ44463.1| DNA topoisomerase 3 [Magnaporthe oryzae Y34]
gi|440487000|gb|ELQ66814.1| DNA topoisomerase 3 [Magnaporthe oryzae P131]
Length = 710
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/533 (44%), Positives = 331/533 (62%), Gaps = 15/533 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVT 65
+L VAEKPS++K+VAG LS Q + R +Y K Y F Y G P C + MT VT
Sbjct: 3 KILCVAEKPSISKAVAGHLSGGQ-FQTHNTRVQYIKNYSFTYDF-GHPWGNCEVTMTCVT 60
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL E+ F ++ W+ P L+ AP+ V DKK I + + +A+ + L +W DCD
Sbjct: 61 GHLTEVQFGPDFKDWNRPTPDHLFSAPLHTQVSNDKKAIAENIRHQAQYARALFIWTDCD 120
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E+ E R + ++RARFS + I QA +N V+ + AV AR E+
Sbjct: 121 REGEHIGGEIREEARKGKPGIEVKRARFSNIERAHILQAARNPVNLDDMQVAAVAARIEL 180
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T+ L++ + ++LVLSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 181 DLRIGYAFTRFLTINLRSLN----GPLKDLVLSYGSCQFPTLGFVVDRYFRVKNFVPETF 236
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I S K + T F+W RG LFD S VI+YE C++ TATV KV+++ K+ P PL
Sbjct: 237 WSIKLSIKKDGKTGNFTWTRGRLFDRASVVILYERCIEAKTATVIKVQEKPTRKWKPLPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+++ R+S + TM++AE LYQ GFISYPRTETD F G NL +VQ+Q
Sbjct: 297 TTVELQKMATKFIRISGQQTMEIAEKLYQKGFISYPRTETDRFDKGMNLRTLVQKQTQDG 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE--SRWSQDHYKLYELVVR 423
WGP+AQ L+D G ++ P +G HDDKAHPPIHP +++G S + ++YEL+VR
Sbjct: 357 RWGPFAQGLVD---GGFQQPRNGRHDDKAHPPIHPITYATGAALSEIGAEAGRVYELIVR 413
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQ 482
FLAC S+ A G T +++ E F G V++ +NYLDVY +E+W +P G+
Sbjct: 414 RFLACCSEDAQGMATDIDVTYGPETFHAHGVVVIERNYLDVYPYENWNNSAELPRLTVGE 473
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
Q PT + G T+ P L+EADL++ MD GIGTDATM +HI+ + R YA
Sbjct: 474 QISPTEAMMTEGKTQAPSYLTEADLIALMDANGIGTDATMAEHIQTIQTRQYA 526
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ G+D M +E L KP LR ME++MK + G +K VL ++Q +
Sbjct: 589 FVPTQLGVALIEGFDRMNFEMSLGKPFLRREMEANMKAICEGRATKDGVLEESIRQYRHV 648
Query: 601 F 601
+
Sbjct: 649 Y 649
>gi|258568124|ref|XP_002584806.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906252|gb|EEP80653.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 587
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 254/613 (41%), Positives = 353/613 (57%), Gaps = 59/613 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGR-SRYNKIYEFNYSIRGQP---CHMLMTSVT 65
+L VAEKP++AK+VA LS LR R ++Y K YEF ++ G P + MTSV
Sbjct: 5 ILCVAEKPAIAKAVAQHLSGG-ALRTASIRGNQYVKNYEFQFAF-GPPWGNSSVTMTSVI 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL LDF+ ++R W SC P L+ APV + V +D I + + +AR+ L +W DCD
Sbjct: 63 GHLTALDFESQWRHWQSCPPGQLFDAPVAEDVDKDNLGIAENIRNKARQADVLFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV +QAV+ L+D Q A AV AR E+
Sbjct: 123 REGEHIGSEV-------------------------RNQAVRVLLDERQ--AHAVAARIEL 155
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR T+ L + +R + + G CQFPTLGFVV+RY+ ++ + E F
Sbjct: 156 DLRIGAAFTRLLTLQLG--ALGGALAERLISYALGSCQFPTLGFVVDRYFRVKNFKPEPF 213
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I SH + T F+W RGHLFD + V+++E C+ TA VT+V ++ K+ P PL
Sbjct: 214 WSIKVSHTRDRKTVNFNWSRGHLFDRAAVVVLFERCLAAKTAKVTRVNKKPTKKWRPLPL 273
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ +++ RM S+ MKVAE LY GFISYPRTETD F G +L +V++Q+
Sbjct: 274 TTVDLQMMGTKFLRMDSQKVMKVAESLYTKGFISYPRTETDQFDKGIDLKKLVEKQVQDG 333
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WGPYAQ L+D G ++ P SG H+DKAHPPIHP + + S + D ++YE VVR F
Sbjct: 334 AWGPYAQGLMD---GAFKQPRSGRHNDKAHPPIHPVTYVAS-SVLTADERRVYEFVVRRF 389
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQF 484
LAC S+ A G T V+I E F G V+L +NYLDVY ++ W +P + G++F
Sbjct: 390 LACCSEDAKGETTEVDIQYGDEKFHAQGLVVLERNYLDVYVYDKWESSQELPKFTVGEEF 449
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-------- 536
P ++ G T P L+E +L+ MD GIGTDATM DHI K+ +R YA
Sbjct: 450 EPKEAIINEGKTVAPNYLTEPELIGLMDANGIGTDATMADHIAKIKEREYAATRRRGGSG 509
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELW------KPNLRSMMESDMKEVSVGNKSKADVL 590
+++ F PT +G ALV GYDD+ +L KP LR ME M+++ G ++K V
Sbjct: 510 RNSVDEFIPTKLGVALVEGYDDLVLDLADCPSLCKPFLRKEMELRMRDICAGTRTKRQV- 568
Query: 591 ANCLQQMKACFLD 603
Q + A F D
Sbjct: 569 ----QLLNAAFFD 577
>gi|71756203|ref|XP_829016.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834402|gb|EAN79904.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583728|gb|ABP01566.1| topoisomerase IIIalpha [Trypanosoma brucei brucei]
gi|261334956|emb|CBH17950.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 918
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/615 (42%), Positives = 366/615 (59%), Gaps = 36/615 (5%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVA+ +A ILS IR S YN ++EFN+ + M+ TSV+GHLME
Sbjct: 5 LNVAEKPSVAREIATILSGGNQRTIR-SHSIYNPVFEFNFEGKT----MICTSVSGHLME 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF + W S DL+ K V D +I+K L E RR L LW+DCDREGEN
Sbjct: 60 SDFPPQAAGWASFPIIDLFTLGTVKRVRSDLSEIQKNLRELGRRATTLALWMDCDREGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEVI+V + + + + RA FSAL R+I A++NL PN+ ++AV+ARQE+DLR+G
Sbjct: 120 ICFEVIDVVQKEHSSISICRAHFSALTKRDILGAMRNLKAPNRALSEAVEARQELDLRLG 179
Query: 191 ASFTRFQTM----LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
A FTRFQT+ KNF VLS+GPCQFPTLGF+V+R WE + E+++
Sbjct: 180 AVFTRFQTLKFCSQFKNF---------PKVLSFGPCQFPTLGFLVQRGWEQKGFVPEDYF 230
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE----PTATVTKVRQQEKLKYPP 302
T+ H G +F+ +RG ++D +A ++ + E P A V +V ++ + PP
Sbjct: 231 TLTLQH----GDTSFNSVRGPIYDKIAAAVVLQQMFDEARTRPEAEVVEVMKRPNRRRPP 286
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN-LHGIVQEQ 361
+PLST+ L+K + + R+SS+ M AE LYQ G+ISYPRTETDSFS N L IV Q
Sbjct: 287 FPLSTVMLQKLCTAHLRISSDQCMTWAESLYQEGYISYPRTETDSFSFTDNELLDIVGSQ 346
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P+ + + +L +R P +GGHDDKAHPPI+PTK + KLY L+
Sbjct: 347 RRNPEVSGFVEAMLADPNRKFRRPLNGGHDDKAHPPIYPTKPMPAA---NDGRAKLYNLI 403
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VRHFLAC S AV + T V + GE F+TSG I K +++VY +E W +PTY G
Sbjct: 404 VRHFLACTSPDAVASTTSVAVVYGGEKFTTSGTTIDEKGWMEVYIYERWKSTTLPTYKQG 463
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++F PT L+ T PPP L+EADL++ MDK GIGTDAT+ HIK +++R Y +K +
Sbjct: 464 ERFRPTHADLEQHRTSPPPNLTEADLITLMDKHGIGTDATISHHIKTVVEREY-VKREGS 522
Query: 542 RFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
PT++G AL Y+ G L +P +R+ ME M +++ G ++ DV+ ++ +
Sbjct: 523 SLVPTHVGNALASAYEVNGLVSLLQPQMRAQMELAMADIAAGKATRRDVVDAAVRLYREI 582
Query: 601 FLDARLKKVKLLEAM 615
F K + L +AM
Sbjct: 583 F----QKMLSLTDAM 593
>gi|170596371|ref|XP_001902741.1| DNA topoisomerase III [Brugia malayi]
gi|158589402|gb|EDP28410.1| DNA topoisomerase III, putative [Brugia malayi]
Length = 718
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/556 (42%), Positives = 336/556 (60%), Gaps = 16/556 (2%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV+GHL++ DF ++ W L+ V+K +D++ TL EE ++ LV+
Sbjct: 1 MTSVSGHLLQHDFPSSFKNWTETPIKVLFDVNVQKSTIPGMEDVRATLIEEIQKSDLLVI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
W DCDREGE I EV+ VC VN +L + RARFS + +++A+ NLV +Q DAV+
Sbjct: 61 WTDCDREGEAIGAEVVSVCTQVNRNLDVYRARFSEITSAAVNRALNNLVRIDQRLVDAVE 120
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
R E+DLRIGA+FTR QT+ L+N + S+ D+N+V SYG CQFPTLGF+VERY I+
Sbjct: 121 CRSELDLRIGAAFTRLQTLHLRN-NFTSIFRDKNIV-SYGSCQFPTLGFIVERYKAIKEF 178
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
SE FW I+ H ++ F W R LFD+ ++ + C + A V V + K K+
Sbjct: 179 ISETFWKISMKHMRDDILVEFFWDRQRLFDHNIVQVLLDDCEEAGEARVLSVITKPKSKW 238
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P L T+ELEK A R + S++ TM VAE LY G+ISYPRTET+ F NL+ VQ+
Sbjct: 239 RPVALDTVELEKLAVRKLKFSAKETMVVAERLYNKGYISYPRTETNKFPKDMNLNIYVQQ 298
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES----RWSQDHYK 416
Q +WG +AQ + NP +G D+AHPPIHP KF++ WS
Sbjct: 299 QTVSGEWGDFAQEIAVRGP----NPRNGSKTDEAHPPIHPLKFATANELIGLEWS----- 349
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
LYE +VRHFLAC+S A G ET V++ + E F+TSG ++ YL+VY+++ W ++P
Sbjct: 350 LYEFIVRHFLACLSVDAKGQETKVQVRVGNENFTTSGLIVEDYGYLNVYKYDKWSDKILP 409
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
+Y + L + G T+PP LL+EADL++ MDK GIGTDAT +HI+ + R YA
Sbjct: 410 SYRENELITSYQLQITEGQTQPPQLLNEADLIALMDKYGIGTDATHAEHIETIKTRQYAA 469
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
+ + RF P IG ALV GYD MGY + KP++R+ +ES +K + +G +++ DVL + +
Sbjct: 470 LNNDGRFIPGYIGLALVDGYDQMGYAMSKPHMRADLESQLKLICLGQRNRDDVLKEQIAR 529
Query: 597 MKACFLDARLKKVKLL 612
+ F A KV++L
Sbjct: 530 YREIFEQAE-DKVEML 544
>gi|167524627|ref|XP_001746649.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774919|gb|EDQ88545.1| predicted protein [Monosiga brevicollis MX1]
Length = 1562
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 287/785 (36%), Positives = 411/785 (52%), Gaps = 90/785 (11%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKP+VAK +A IL+ G R Y +++FN I G+PC++ +TSV GHLM
Sbjct: 6 VLMVAEKPTVAKGIAQILAP--GCRREATNCTYVGLWDFNIKIEGRPCNVKLTSVLGHLM 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDK------KDIKKTLEEEARRCQWLVLWLD 123
+F + YR WHSC P +L+ AP+ +HV D+ IK L++ AR C WL++ D
Sbjct: 64 TWEFKDAYRGWHSCAPQELFDAPL-QHVVNDRPGETNCATIKTLLQKYARTCDWLIIATD 122
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
DREGENI FE+IEVCR VN +L +R +FSA+ EI+ + LV P+Q + A ARQ
Sbjct: 123 NDREGENIGFEIIEVCRRVNRNLDCKRMKFSAVTPGEINGCLTRLVPPDQRASQACVARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIGA FTRFQT+ L+ + P +F + + +SE
Sbjct: 183 ELDLRIGAIFTRFQTLRLQALY---------------PARFGREARKQPISYVLHQEQSE 227
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
++ FSW RG +FD A ++ + C E A V V+ +++ KY P
Sbjct: 228 ---------AGDDYNVEFSWHRGRVFDEQVAGVLADRCEPE-AARVVDVQSRQRSKYRPV 277
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T E++K ASR F+++ ++ AE LYQ G +SYPRTET+ F S +L +V+
Sbjct: 278 GLTTTEMQKIASRRFKIAPADSLSAAEKLYQQGILSYPRTETNKFDSSIDLRPMVEVFAQ 337
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
H +G +A LL+ G P +G D+AHPPIHPTK + S Q ++Y+LV R
Sbjct: 338 HSLYGAFASSLLE---GQGPTPRNGNKSDEAHPPIHPTKSVNNLSGREQ---QIYDLVTR 391
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLV-------- 474
HFLAC S+ A G ET V ++ EVF+ G VI + YL++Y +++WGG V
Sbjct: 392 HFLACCSRDARGEETTVTVHKGDEVFTAKGLVIRDRGYLEIYHPYDNWGGKVGFSKKIWP 451
Query: 475 ----------------IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
+P Y GQ+ +P + G T P LL+EADLLS M + IGT
Sbjct: 452 GQSFGYMRQKEGDDGMLPPYTVGQE-LPANCEVLVGETSAPALLTEADLLSLMARYEIGT 510
Query: 519 DATMHDHIKKLLDRFYAIK-DANTRFAPTNIGEALVMGYDDMGYEL--WKPNLRSMMESD 575
DATM +HIK +L+R Y K +A PT +G ALV YDDM +E+ +P+LR ME+D
Sbjct: 511 DATMAEHIKNILEREYVCKQEAGQSLVPTTLGIALVNAYDDMSFEISVARPDLRREMEAD 570
Query: 576 MKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVV 635
M+ V G +SKA V+A + Q + F + + A F SG +GE
Sbjct: 571 MQRVCAGERSKAQVVARVISQYREVFQVVCREMDRFDNAFVHQFGEASGAPP-MVSGEAW 629
Query: 636 RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVY 695
R C C+++ K ++D ++ C +P+CR + WL S +V C C
Sbjct: 630 RTCPECKKAAQAFKTTKDKKWLLSCRGYPKCRASQWLDNCQS-ISVLDRHCTRCHE---R 685
Query: 696 LIQFKFRQHEIPPGFNVN----HLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNN 751
L++ +FR +P +V+ H GC+ C E + A RGP +
Sbjct: 686 LVRIEFRAGALPAYLHVDGSSVHEGCL-CCSEPIVNF-----------ANSRGPLQIRPS 733
Query: 752 GQQSN 756
G SN
Sbjct: 734 GGHSN 738
>gi|396493373|ref|XP_003844019.1| hypothetical protein LEMA_P016700.1 [Leptosphaeria maculans JN3]
gi|312220599|emb|CBY00540.1| hypothetical protein LEMA_P016700.1 [Leptosphaeria maculans JN3]
Length = 736
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/530 (44%), Positives = 332/530 (62%), Gaps = 10/530 (1%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR--GQPCHMLMTSVTGH 67
VL VAEKPS+AK+VA L+ G Y K Y F++ + GQ C + T V GH
Sbjct: 4 VLCVAEKPSIAKAVANHLAGQARAEDVPGIG-YVKNYRFDFGFQQWGQ-CSVTFTCVAGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
++ DF ER++KWHSC PA L+ AP+ + + E+KK + K +E +AR L +W DCDRE
Sbjct: 62 IVAHDFPERFKKWHSCQPAALFDAPIEQSIAENKKVVAKNIETQARYASILYIWTDCDRE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ ++ V ++ + RARFS + + QA Q+ V ++ A AV AR E+DL
Sbjct: 122 GEHIGTEIRDIALKVKPNMQVWRARFSNIERAHVIQASQSPVRLDEAQAQAVSARIELDL 181
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+GA+FTR QT+ L+N + ++R ++SYG CQFPTLGFVV+RY ++ E FW
Sbjct: 182 RLGAAFTRMQTLALQNM-VPQQGEERRKLISYGSCQFPTLGFVVDRYLRVRNFVPESFWL 240
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I +HK + F+W RGHLFD + +II+E C+ TA V K+ ++ K+ P PL+T
Sbjct: 241 IKLAHKKDGIDVKFNWRRGHLFDRMAVIIIFERCLVSKTAKVVKMTKKPTKKWKPLPLTT 300
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL+K SR+ RM+S+ MKVAE LY G+ISYPRTETD F G +L +V Q W
Sbjct: 301 VELQKNGSRFLRMTSQDVMKVAEQLYTKGWISYPRTETDQFDRGMDLRALVSRQTQDNRW 360
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
GP+AQ L++ G ++ P SG ++DKAHPPIHP + + ++ ++D K+Y+ VVR FLA
Sbjct: 361 GPFAQNLMN---GGFQQPRSGRNNDKAHPPIHPVNYVAA-TQLNEDERKVYDFVVRRFLA 416
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C ++ AVG T +EI E+F G +LA+NYLDVY F+ W +P Y G+ F P
Sbjct: 417 CCAEDAVGEATDIEIEYGSELFHAHGLRVLARNYLDVYPFDKWESSQQLPDYRLGETFEP 476
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
T L G T PP L+E +L+S MD GIGTDATM DHI+ + +R Y I
Sbjct: 477 TEANLLDGETSPPAYLTEPELISLMDANGIGTDATMADHIETIKERQYVI 526
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ GYD++G+E L KP LR ME MK + G ++ DV+ L Q +A
Sbjct: 585 FIPTTLGVALIEGYDNVGFETSLSKPFLRKEMEGQMKAICEGRTTRNDVVQQNLDQYRAV 644
Query: 601 FLDARLKKVKLLEAM 615
F + ++++ +L+A+
Sbjct: 645 F-NRTVQQMHVLKAV 658
>gi|239608653|gb|EEQ85640.1| DNA topoisomerase III [Ajellomyces dermatitidis ER-3]
Length = 674
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/658 (39%), Positives = 356/658 (54%), Gaps = 66/658 (10%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTGHL 68
VL VAEKPS+AK++A L +G Y K YEF+Y+ R C + MTSV GHL
Sbjct: 6 VLCVAEKPSIAKAIANHLGDRVITHNIQGNP-YVKNYEFDYTFRQWGHCSVTMTSVLGHL 64
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ +F+ RY+ W SCDP+ L+ A + V + + I ++ ARR L +W DCDREG
Sbjct: 65 LSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRAGVLFIWTDCDREG 124
Query: 129 ENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
E+I E+ V N L RA FS + I A D ++ A+AV +R E
Sbjct: 125 EHIGTEIRSVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLDEAQANAVASRIE 184
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLR+GASFTR T+ L+ + + ++SYG CQFPTLGF+VERYW ++ E
Sbjct: 185 LDLRVGASFTRHLTLSLRPVLQRGNLSEASQLISYGSCQFPTLGFIVERYWRVRNFIPEP 244
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW+I H+ FSW R HLFD +AVI+YE C+ A V KV+ K+ P P
Sbjct: 245 FWSIKLMHRKAGTRVNFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTTPTSKWKPLP 304
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL+K SR+F M S+ +++AE LYQ G+ISYPRTETD F G +L G+VQ+Q
Sbjct: 305 LTTLELQKCGSRFFGMDSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLRGLVQKQAQG 364
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
W YA L++ G + P +G +DDKAHPPIHP F + + S + +++E VVRH
Sbjct: 365 GRWADYATALVE---GGFSWPRNGHNDDKAHPPIHPVNFVN-PTTLSHEEQRVHEFVVRH 420
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLAC S+ A G++T + I E F SG VIL +NYLDVY ++ W +P ++ G+ F
Sbjct: 421 FLACCSKDAQGSKTDIIILYGPETFHASGLVILERNYLDVYVYDRWSNQELPPFIKGEVF 480
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR-- 542
PT L G T PP L+E DLL+ M+ GIGTDATM DHI ++DR Y A R
Sbjct: 481 EPTEAILSEGKTSPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQPRQA 540
Query: 543 --------------------------------------------------FAPTNIGEAL 552
F PT +G AL
Sbjct: 541 RHGNDEEESEELPAQARGGNGRRGRTAVAPRRGGRNSGAGRGGAITGVREFIPTTLGVAL 600
Query: 553 VMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
V G+++MG+E L KP LR ME M + G +K V+ ++Q + + AR+++
Sbjct: 601 VEGHENMGFETNLMKPFLRKEMELKMNAICNGQTTKTRVVNETIEQYRGVY--ARMQQ 656
>gi|119194847|ref|XP_001248027.1| hypothetical protein CIMG_01798 [Coccidioides immitis RS]
Length = 634
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/626 (39%), Positives = 363/626 (57%), Gaps = 47/626 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKP++AK+VA LS + ++Y K YEF +S G P + MTSV G
Sbjct: 5 ILCVAEKPAIAKAVAQHLSGGALRTVAIRGNQYVKNYEFQFSF-GPPWGNSSVTMTSVIG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL LDF+ +R W SC P L+ APV V +DK I + + +AR+ L +W DCDR
Sbjct: 64 HLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIRNKARQADALFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFS----ALIDREIHQAVQNLVDPNQWFADAVDAR 182
EGE+I EV N + ++RA+F+ AL +R+I +AV AR
Sbjct: 124 EGEHIGSEVRTQAVGANPRIEVKRAKFTRNPIALDERQI---------------NAVAAR 168
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTR T+ L + +R ++SYG CQFPTLGFVV+RY+ ++ +
Sbjct: 169 IELDLRIGAAFTRLLTLQLG--ALGGALSER--LISYGSCQFPTLGFVVDRYFRVKNFKP 224
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E FW+I +H + T F+W RG+LFD + V+I+E C+ TA VTKV ++ K+ P
Sbjct: 225 EPFWSIKVTHARDGKTVNFTWSRGNLFDRAAVVMIFERCLTAKTAKVTKVNKKPTKKWRP 284
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T++L+ S++ RM S+ MKVAE LY GFISYPRTETD F G +L ++++QI
Sbjct: 285 LPLTTVDLQMMGSKFLRMDSQKVMKVAESLYTKGFISYPRTETDQFDKGIDLKKLIEKQI 344
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG Y+Q L+ AG ++ P SG H+D+AHPPIHP + + S + D ++YE VV
Sbjct: 345 QDGVWGQYSQGLM---AGGFKQPRSGRHNDQAHPPIHPVTYVA-PSVLTADERRVYEFVV 400
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S A G + V+I E F G ++L +NYLD+Y ++ W +P + G
Sbjct: 401 RRFLACCSDDAKGETSEVDIQYGDEKFHAQGLIVLERNYLDIYVYDKWESSQELPKFTVG 460
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI----- 536
+ F P + G T PP L+E +L+ MD GIGTDATM +HI K+ DR Y
Sbjct: 461 EVFEPKEAKITEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIFKIKDRQYVATRRRG 520
Query: 537 ---KDANTRFAPTNIGEALVMGYDDMGYELW------KPNLRSMMESDMKEVSVGNKSKA 587
+++ F PT +G ALV GYD++ +L KP LR ME M+++ G ++
Sbjct: 521 GNGRNSVEEFIPTKLGVALVEGYDNLVLDLADCPSLCKPFLRKEMELRMRDICAGTTTRR 580
Query: 588 DVLANCLQQMKACFLDARLKKVKLLE 613
V++ L+ + F+ + +++++L+
Sbjct: 581 QVVSENLEMYRRVFVHTQ-RRIEVLK 605
>gi|327308726|ref|XP_003239054.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
gi|326459310|gb|EGD84763.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
Length = 630
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/628 (40%), Positives = 365/628 (58%), Gaps = 38/628 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIR----EGRSRYNKIYEFNYSIRGQP---CHMLMT 62
+L VAEKP++AK VA LS G RIR EG ++Y K YEF+++ G P C ++MT
Sbjct: 5 ILCVAEKPAIAKLVAQHLS---GGRIRTSGIEG-NQYVKNYEFDFTF-GPPWGSCSVVMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL DF+ RYR W+SC+P+ L+ A V V ++K I + ++ +AR + L +W
Sbjct: 60 SVLGHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKEKVGIARNIKRQARDSRALFIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I EV + N + ++RARFS + +A + + ++ DAV AR
Sbjct: 120 DCDREGEHIGSEVRDQAVLGNPSIEIKRARFSNTERTHVLEAARRPIGLDERQVDAVAAR 179
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTR QT+ L+ ++ + ++SYG CQFPTLGFVV+RY ++ +
Sbjct: 180 IELDLRIGAAFTRLQTLQLQTLG-GALAEK---IISYGSCQFPTLGFVVDRYMRVKNFKP 235
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E FW+I SH + T F+W RGHLFD + V+++E C+ TATVTKV ++ K+ P
Sbjct: 236 EAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVVVLFERCLAAKTATVTKVNKKPTSKWRP 295
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T++L+ S+Y R+ S+ MK AE LY GFISYPRTETD F + +L +V++Q
Sbjct: 296 LPLTTVDLQMMGSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFDNEIDLKKLVEKQY 355
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG YA+ L+ G ++ P G ++DKAHPPIHP + S + S + K+YE V
Sbjct: 356 PSEAWGEYARGLI---GGGFKQPRRGRNNDKAHPPIHPVAYVS-PTVLSANEKKVYEFVT 411
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S+ A G T +EI E F T G V+L +NYLDVY ++ W +P +
Sbjct: 412 RRFLACCSEDAKGESTDIEIQYGDEEFHTRGLVVLERNYLDVYVYDKWESSQPLPNFALN 471
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ F P + G T P L+E +L+ MD GIGTDATM +HI K+ R Y
Sbjct: 472 ESFEPKEANITEGKTVAPGYLTEPELIGLMDANGIGTDATMAEHISKIKAREYVATRPRG 531
Query: 542 ----------RFAPTNIGEALVMGYDDMGY------ELWKPNLRSMMESDMKEVSVGNKS 585
F PT +G ALV GYD++ L KP LR ME M ++ G K+
Sbjct: 532 GGRGSGGRVDEFIPTKLGVALVEGYDNVVAGLPDCPSLTKPFLRKEMELRMGDICSGTKT 591
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLE 613
KA+V+ + F + ++++LL+
Sbjct: 592 KAEVVRQNVDMYSEVFTHTQ-RRIELLK 618
>gi|326474803|gb|EGD98812.1| DNA topoisomerase III [Trichophyton tonsurans CBS 112818]
Length = 630
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/629 (40%), Positives = 367/629 (58%), Gaps = 38/629 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIR----EGRSRYNKIYEFNYSIRGQP---CHMLMT 62
+L VAEKP++AK VA LS G RIR EG ++Y K +EF+++ G P C ++MT
Sbjct: 5 ILCVAEKPAIAKLVAQHLS---GGRIRTSGIEG-NQYVKNHEFDFTF-GPPWGSCSVVMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL DF+ RYR W+SC+P+ L+ A V V ++ I + ++ +AR + L +W
Sbjct: 60 SVLGHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKENLGIARNIKRQARDSRALFIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I EV + N + ++RA+FS + +A + ++ ++ ADAV AR
Sbjct: 120 DCDREGEHIGSEVRDQAVLGNPSIEIKRAKFSNTERTHVLEAARRPIELDERQADAVAAR 179
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTR QT+ L+ + +R ++SYG CQFPTLGFVV+RY ++ +
Sbjct: 180 IELDLRIGAAFTRLQTLQLQT--LGGALAER--IISYGSCQFPTLGFVVDRYMRVKNFKP 235
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E FW+I SH + T F+W RGHLFD + VI++E C+ TATVTKV ++ K+ P
Sbjct: 236 EAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVVILFERCLAAKTATVTKVNKKPTSKWRP 295
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T++L+ S+Y R+ S+ MK AE LY GFISYPRTETD F + +L +V++Q
Sbjct: 296 LPLTTVDLQMMGSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFDNEIDLKKLVEKQY 355
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG YA+ L+ G ++ P G ++DKAHPPIHP + S + + + K+YE V
Sbjct: 356 PSEVWGEYARGLI---GGGFKQPRRGRNNDKAHPPIHPVAYVS-PTVLNANEKKVYEFVT 411
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S+ A G T +E+ E F T G V+L +NYLDVY ++ W +P +V
Sbjct: 412 RRFLACCSEDAKGESTDIELQYGDEEFHTRGLVVLERNYLDVYVYDKWESSQPLPNFVLN 471
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ F P + G T P L+E +L+ MD GIGTDATM DHI K+ R Y
Sbjct: 472 ESFEPKEANITEGKTVAPGYLTEPELIGLMDANGIGTDATMADHISKIKAREYVATRPRG 531
Query: 542 ----------RFAPTNIGEALVMGYDDMGY------ELWKPNLRSMMESDMKEVSVGNKS 585
F PT +G ALV GYD++ L KP LR ME M ++ G K+
Sbjct: 532 GGRGSGGRVDEFIPTKLGVALVEGYDNVVAGLPDCPSLTKPFLRKEMELRMGDICSGTKT 591
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEA 614
KA+V+ + F + ++++LL+
Sbjct: 592 KAEVVRQNVDMYSEVFTHTQ-RRIELLKV 619
>gi|320034640|gb|EFW16583.1| DNA topoisomerase 3-beta [Coccidioides posadasii str. Silveira]
Length = 634
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/626 (39%), Positives = 363/626 (57%), Gaps = 47/626 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKP++AK+VA LS + ++Y K YEF +S G P + MTSV G
Sbjct: 5 ILCVAEKPAIAKAVAQHLSGGALRTVAIRGNQYVKNYEFQFSF-GPPWGNSSVTMTSVIG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL LDF+ +R W SC P L+ APV V +DK I + + +AR+ L +W DCDR
Sbjct: 64 HLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIRNKARQADALFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFS----ALIDREIHQAVQNLVDPNQWFADAVDAR 182
EGE+I EV N + ++RA+F+ AL +R+I +AV AR
Sbjct: 124 EGEHIGSEVRTQAVGANPRIEVKRAKFTRNPIALDERQI---------------NAVAAR 168
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTR T+ L + +R ++SYG CQFPTLGFVV+RY+ ++ +
Sbjct: 169 IELDLRIGAAFTRLLTLQLG--ALGGALSER--LISYGSCQFPTLGFVVDRYFRVKNFKP 224
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E +W+I +H + T F+W RG+LFD + V+I+E C+ TA VTKV ++ K+ P
Sbjct: 225 EPYWSIKVTHARDGKTVNFTWSRGNLFDRAAVVMIFERCLTAKTAKVTKVNKKPTKKWRP 284
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T++L+ S++ RM S+ MKVAE LY GFISYPRTETD F G +L ++++QI
Sbjct: 285 LPLTTVDLQMMGSKFLRMDSQKVMKVAESLYTKGFISYPRTETDQFDKGIDLKKLIEKQI 344
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG Y+Q L+ AG ++ P SG H+D+AHPPIHP + + S + D ++YE VV
Sbjct: 345 QDGVWGQYSQGLM---AGGFKQPRSGRHNDQAHPPIHPVTYVA-PSVLTADERRVYEFVV 400
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S A G + V+I E F G ++L +NYLD+Y ++ W +P + G
Sbjct: 401 RRFLACCSDDAKGETSEVDIQYGDEKFHAQGLIVLERNYLDIYVYDKWESSQELPKFTVG 460
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI----- 536
+ F P + G T PP L+E +L+ MD GIGTDATM +HI K+ DR Y
Sbjct: 461 EVFEPKEAKITEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIFKIKDRQYVATRRRG 520
Query: 537 ---KDANTRFAPTNIGEALVMGYDDMGYELW------KPNLRSMMESDMKEVSVGNKSKA 587
+++ F PT +G ALV GYD++ +L KP LR ME M+++ G ++
Sbjct: 521 GNGRNSVEEFIPTKLGVALVEGYDNLVLDLADCPSLCKPFLRKEMELRMRDICAGTTTRR 580
Query: 588 DVLANCLQQMKACFLDARLKKVKLLE 613
V++ L+ + F+ + +++++L+
Sbjct: 581 QVVSENLEMYRRVFVHTQ-RRIEVLK 605
>gi|430813900|emb|CCJ28786.1| unnamed protein product [Pneumocystis jirovecii]
Length = 597
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 243/595 (40%), Positives = 356/595 (59%), Gaps = 35/595 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYE--FNYSIRGQPCHMLMTSVT 65
+ +L VAEKPS+AK+++ IL + R+ + YNK Y+ F ++ + TSV
Sbjct: 15 MKILCVAEKPSIAKTISNILG-GGNVHTRKTKDIYNKNYDIHFKFNFNWGDSSVTFTSVR 73
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL+E +F+E +RKW++C+P L+ A + + ++ K I + L +E++ + L +W DCD
Sbjct: 74 GHLLEWEFEETFRKWNTCNPLSLFEAKIITTINKEMKSIHENLLKESKYAEGLYIWTDCD 133
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE IA E++ + R N + ++RA F+ L I +A + +Q +AV AR E
Sbjct: 134 REGEYIAAEIVNIVREANPKIEIKRAHFNNLEKTHILKAAHQPFNIDQKQVNAVAARIEF 193
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG++FTRFQT+ L+NF + + + ++SYG CQFPTLGFVV+R+ I+ E+F
Sbjct: 194 DLRIGSAFTRFQTLSLQNF--EPLAKE---IVSYGSCQFPTLGFVVDRWKRIENFVPEKF 248
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I + + +F+W R LFD S +IYE C+ V V Q+ K + PYPL
Sbjct: 249 WSIKIYFHNYQ--TSFNWKRIRLFDRLSVFLIYENCLLFDKVKVKNVLQKPKRR-KPYPL 305
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K+ +Y +SS+ MK+AE LY GFISYPRTETD FS +LH ++++QI
Sbjct: 306 TTVELQKQGVKYLGLSSKDIMKIAETLYTKGFISYPRTETDQFSDDIDLHSLIRKQINDE 365
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG YAQ LL+ G + +P G +DDKAHPPIHP + + S D YK+Y +VRHF
Sbjct: 366 QWGSYAQSLLN---GKFSHPRKGKNDDKAHPPIHPIAYVKKNTLRSVDEYKVYSFIVRHF 422
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQF 484
LA SQ A G +T V + E FSTSG V+L KNYLD+Y +E W +P + G+
Sbjct: 423 LASCSQNAQGKQTTVIVQWGNEFFSTSGLVVLEKNYLDIYLYEKWNSSTCLPIFNEGEVI 482
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA------IKD 538
+ G T PP L+E++L++ M+ GIGTD+T+ +HI+K++DR Y IK+
Sbjct: 483 AFDYSEMSEGKTEPPAHLTESELINLMNINGIGTDSTIAEHIQKIIDRKYVFRQLKNIKN 542
Query: 539 ANTR-----FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSK 586
R F P+ +G ALV GYD +G+ L KP LR KEV + KS+
Sbjct: 543 HKNRDKIYEFVPSTLGIALVDGYDKIGFNQSLTKPFLR-------KEVLLFQKSQ 590
>gi|238880879|gb|EEQ44517.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 629
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/600 (39%), Positives = 349/600 (58%), Gaps = 24/600 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ +L VAEKPS++K VA IL + ++R R ++ K Y+F ++ + PC + MTSV
Sbjct: 1 MRILCVAEKPSISKEVANILGGGRK-KVRNSREKFIKNYDFTFTFNSEDGPCQVTMTSVA 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ LDF + W +C P L+ A + + KK I + + EEAR L++W DCD
Sbjct: 60 GHITGLDFGSAF-SWGNCVPGRLFEADIETIIT--KKSIYENIAEEARNADKLMIWTDCD 116
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE I FE++ R N +L L RARFS L I +A +N V+ + AV R
Sbjct: 117 REGEYIGFEIMNAARKYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAVSAVSCR 176
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLR+G SFTR T L+ I ++N + SYG CQFPTLGFVV+RY +++
Sbjct: 177 MEIDLRVGTSFTRLLTDQLRQKGII----EKNELASYGTCQFPTLGFVVDRYKRVKSFTP 232
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYP 301
E FW I + E F+W+RGH FD V++Y+ C + T++K+ + K +
Sbjct: 233 EPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLYDRCCKSGEFGTISKIESKRKPNFR 292
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P+PL+T+EL+K +R+F+MS++ + AE LY G++SYPRTETD F+ T+ +++
Sbjct: 293 PFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGYLSYPRTETDRFAKETDFKSLLEVH 352
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
P WG Y +LL+ + P SG HDDKAHPPIHP K+ S ++ + D K+YE V
Sbjct: 353 KQDPRWGSYTTKLLNEG---FETPRSGSHDDKAHPPIHPIKYVSLDTLNTLDEKKVYEYV 409
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH 480
VR F+AC S+ AVG +T+V + E F+ SG ++ KNYL+VY ++ W +P +
Sbjct: 410 VRRFIACCSKDAVGTQTVVTLKWGDEFFTASGLMVHEKNYLEVYTYKKWESSKQLPKFTE 469
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA---IK 537
G+Q ++ L G T PP ++E +L++ MD GIGTDAT+ +HI K+ R Y K
Sbjct: 470 GEQVKLSSGVLKDGKTSPPNHMTEPELIALMDANGIGTDATIAEHINKIETRHYIDKLKK 529
Query: 538 DANTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
N PT +G L+ G + M +E L KP LR +E ++E++ G++ K DVL +
Sbjct: 530 GKNEYILPTPLGMGLIEGLEKMEFEDVSLSKPFLRKSLERSLEEIATGSRPKVDVLNTTI 589
>gi|327353792|gb|EGE82649.1| DNA topoisomerase [Ajellomyces dermatitidis ATCC 18188]
Length = 757
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/658 (39%), Positives = 355/658 (53%), Gaps = 66/658 (10%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTGHL 68
VL VAEKPS+AK++A L +G Y K YEF+Y+ R C + MTSV GHL
Sbjct: 6 VLCVAEKPSIAKAIANHLGDRVITHNIQGNP-YVKNYEFDYTFRQWGHCSVTMTSVLGHL 64
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ +F+ RY+ W SCDP+ L+ A + V + + I ++ ARR L +W DCDREG
Sbjct: 65 LSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRAGVLFIWTDCDREG 124
Query: 129 ENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
E+I E+ V N L RA FS + I A D ++ A+AV +R E
Sbjct: 125 EHIGTEIRSVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLDEAQANAVASRIE 184
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLR+GASFTR T+ L+ + + ++SYG CQFPTLGF+VERYW ++ E
Sbjct: 185 LDLRVGASFTRHLTLSLRPVLQRGNLSEASQLISYGSCQFPTLGFIVERYWRVRNFIPEP 244
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW+I H+ FSW R HLFD +AVI+YE C+ A V KV+ K+ P P
Sbjct: 245 FWSIKLMHRKAGTRVNFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTTPTSKWKPLP 304
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL+K SR+F M S+ +++AE LYQ G+ISYPRTETD F G +L G+VQ+Q
Sbjct: 305 LTTLELQKCGSRFFGMDSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLRGLVQKQAQG 364
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
W YA L++ G + P +G +DDKAHPPIHP F + + S + +++E VVRH
Sbjct: 365 GRWADYATALVE---GGFSWPRNGHNDDKAHPPIHPVNFVN-PTTLSHEEQRVHEFVVRH 420
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLAC S+ A G++T + I E F SG VIL +NYLDVY ++ W +P ++ G+ F
Sbjct: 421 FLACCSKDAQGSKTDIIILYGPETFHASGLVILERNYLDVYVYDRWSNQELPPFIKGEVF 480
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR-- 542
PT L G PP L+E DLL+ M+ GIGTDATM DHI ++DR Y A R
Sbjct: 481 EPTEAILSEGKASPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQPRQA 540
Query: 543 --------------------------------------------------FAPTNIGEAL 552
F PT +G AL
Sbjct: 541 RHGNDEEESEELPAQARGGNGRRGRTAVAPRRGGRNSGAGRGGAITGVREFIPTTLGVAL 600
Query: 553 VMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
V G+++MG+E L KP LR ME M + G +K V+ ++Q + + AR+++
Sbjct: 601 VEGHENMGFETNLMKPFLRKEMELKMNAICNGQTTKTRVVNETIEQYRGVY--ARMQQ 656
>gi|326477792|gb|EGE01802.1| DNA topoisomerase III [Trichophyton equinum CBS 127.97]
Length = 630
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/629 (40%), Positives = 367/629 (58%), Gaps = 38/629 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIR----EGRSRYNKIYEFNYSIRGQP---CHMLMT 62
+L VAEKP++AK VA LS G RIR EG ++Y K +EF+++ G P C ++MT
Sbjct: 5 ILCVAEKPAIAKLVAQHLS---GGRIRTSGIEG-NQYVKNHEFDFTF-GPPWGSCSVVMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL DF+ RYR W+SC+P+ L+ A V V ++ I + ++ +AR + L +W
Sbjct: 60 SVLGHLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKENLGIARNIKRQARDSRALFIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I EV + N + ++RA+FS + +A + ++ ++ ADAV AR
Sbjct: 120 DCDREGEHIGSEVRDQAVLGNPSIEIKRAKFSNTERTHVLEAARRPIELDERQADAVFAR 179
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTR QT+ L+ + +R ++SYG CQFPTLGFVV+RY ++ +
Sbjct: 180 IELDLRIGAAFTRLQTLQLQT--LGGALAER--IISYGSCQFPTLGFVVDRYMRVKNFKP 235
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E FW+I SH + T F+W RGHLFD + VI++E C+ TATVTKV ++ K+ P
Sbjct: 236 EAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVVILFERCLAAKTATVTKVNKKPTSKWRP 295
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T++L+ S+Y R+ S+ MK AE LY GFISYPRTETD F + +L +V++Q
Sbjct: 296 LPLTTVDLQMMGSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFDNEFDLKKLVEKQY 355
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG YA+ L+ G ++ P G ++DKAHPPIHP + S + + + K+YE V
Sbjct: 356 PSEVWGEYARGLI---GGGFKQPRRGRNNDKAHPPIHPVAYVS-PTVLNANEKKVYEFVT 411
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S+ A G T +E+ E F T G V+L +NYLDVY ++ W +P +V
Sbjct: 412 RRFLACCSEDAKGESTDIELQYGDEEFHTRGLVVLERNYLDVYVYDKWESSQPLPNFVLN 471
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ F P + G T P L+E +L+ MD GIGTDATM DHI K+ R Y
Sbjct: 472 ESFEPKEANITEGKTVAPGYLTEPELIGLMDANGIGTDATMADHISKIKAREYVATRPRG 531
Query: 542 ----------RFAPTNIGEALVMGYDDMGY------ELWKPNLRSMMESDMKEVSVGNKS 585
F PT +G ALV GYD++ L KP LR ME M ++ G K+
Sbjct: 532 GGRGSGGRVDEFIPTKLGVALVEGYDNVVAGLPDCPSLTKPFLRKEMELRMGDICSGTKT 591
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEA 614
KA+V+ + F + ++++LL+
Sbjct: 592 KAEVVRQNVDMYSEVFTHTQ-RRIELLKV 619
>gi|68465569|ref|XP_723146.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|68465862|ref|XP_722999.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|46445011|gb|EAL04282.1| likely DNA topoisomerase III [Candida albicans SC5314]
gi|46445167|gb|EAL04437.1| likely DNA topoisomerase III [Candida albicans SC5314]
Length = 629
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/600 (39%), Positives = 350/600 (58%), Gaps = 24/600 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ +L VAEKPS++K VA IL + ++R R ++ K Y+F ++ + PC + MTSV
Sbjct: 1 MRILCVAEKPSISKEVANILGGGRK-KVRNSREKFIKNYDFTFTFNSEDGPCQVTMTSVA 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ LDF + W +C P L+ A ++ + KK I + + EEAR L++W DCD
Sbjct: 60 GHITGLDFGSAF-SWGNCVPGRLFEADIKTIIT--KKSIYENIAEEARNADKLMIWTDCD 116
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE I FE++ R N +L L RARFS L I +A +N V+ + AV R
Sbjct: 117 REGEYIGFEIMNAARKYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAVSAVSCR 176
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLR+G SFTR T L+ I ++N + SYG CQFPTLGFVV+RY +++
Sbjct: 177 MEIDLRVGTSFTRLLTDQLRQKGII----EKNELASYGTCQFPTLGFVVDRYKRVKSFTP 232
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYP 301
E FW I + E F+W+RGH FD V++Y+ C + T++K+ + K +
Sbjct: 233 EPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLYDRCCKSGEFGTISKIESKRKPNFR 292
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P+PL+T+EL+K +R+F+MS++ + AE LY G++SYPRTETD F+ T+ +++
Sbjct: 293 PFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGYLSYPRTETDRFAKETDFKSLLEVH 352
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
P WG Y +LL+ + P SG HDDKAHPPIHP K+ S ++ + D K+YE V
Sbjct: 353 KQDPRWGSYTTKLLNEG---FETPRSGSHDDKAHPPIHPIKYVSLDTLNTLDEKKVYEYV 409
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH 480
VR F+AC S+ AVG +T+V + E F+ SG ++ KNYL+VY ++ W +P +
Sbjct: 410 VRRFIACCSKDAVGTQTVVTLKWGDEFFTASGLMVHEKNYLEVYTYKKWESSKQLPKFTE 469
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA---IK 537
G+Q ++ L G T PP ++E +L++ MD GIGTDAT+ +HI K+ R Y K
Sbjct: 470 GEQVKLSSGILKDGKTSPPNHMTEPELIALMDANGIGTDATIAEHINKIETRHYINKLKK 529
Query: 538 DANTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
N PT +G L+ G + M +E L KP LR +E +++++ G++ K DVL +
Sbjct: 530 GKNEYILPTPLGMGLIEGLEKMEFEDVSLSKPFLRKSLERSLEDIATGSRPKVDVLNTTI 589
>gi|448115381|ref|XP_004202802.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
gi|359383670|emb|CCE79586.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
Length = 620
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/618 (38%), Positives = 359/618 (58%), Gaps = 20/618 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-CHMLMTSVTG 66
+ +L VAEKPS++K+V+ ILS + ++R R++Y K Y+F + G C + MTSV G
Sbjct: 1 MKILCVAEKPSISKAVSHILSGGKT-KVRNSRNKYVKNYDFKFDFPGVGLCDVTMTSVMG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF ++ W C+P L+ AP +V K++ + + EARRC L++W DCDR
Sbjct: 60 HITNIDFPTQF-SWGRCNPGRLFDAPTIDNV--SNKEVYENISNEARRCNRLMIWTDCDR 116
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I E+ N L + R++FS L I QA +N + + AV R
Sbjct: 117 EGEFIGHEIFSAAVKGNPSLRVEDIWRSQFSHLERSHILQAARNPIRLDMNSVHAVRCRM 176
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
EIDLR+GASFTRF T L + + + ++ +SYG CQFPTLGFVV+RY ++ E
Sbjct: 177 EIDLRVGASFTRFLTDLYRRTQVFPL--EKGGFISYGTCQFPTLGFVVDRYNRVKRFIPE 234
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+FW I+ + K + T TF W + H+FD +IY+ C++ A V ++ ++ KY P
Sbjct: 235 KFWYISITVKKDNKTETFHWTKNHVFDRLYLALIYQNCLKNDNAEVVQLIERPTSKYRPL 294
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K S YF+MS++ + AE LY GF+SYPRTETD F +L ++Q+Q
Sbjct: 295 PLTTVELQKNCSMYFKMSAKRALDAAEKLYNKGFLSYPRTETDRFPPTMDLKAVIQKQTQ 354
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+ WG YA LL+ G +R+P +G HDDKAHPPIHP F E + D K+YELVVR
Sbjct: 355 NSTWGQYASELLN---GKFRSPRAGSHDDKAHPPIHPVNFVKLEMLDNADEKKVYELVVR 411
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQ 482
FLAC S+ A G ET + + E F+ S V+L +N+LDVY + +W +P + G+
Sbjct: 412 RFLACCSEDAKGKETKISLRWGAEEFTNSAIVVLERNFLDVYPYMTWKSTTPLPPLLKGE 471
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI---KDA 539
+ + G T PP ++E++L++ MD GIGTDAT+ +HI K++ R Y + K+
Sbjct: 472 TIKVASSVMKEGKTSPPQHMTESELIALMDANGIGTDATIAEHIDKIISRGYVVKVRKNK 531
Query: 540 NTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
N P+ +G L+ G++D+ ++ L KP LR +E+ ++E+ G K K V+ +
Sbjct: 532 NDFIIPSELGMGLIEGFNDLEFDNLSLSKPFLRKRLENCLQEIVSGTKVKEQVVQEIIFL 591
Query: 597 MKACFLDARLKKVKLLEA 614
K F + KL+ A
Sbjct: 592 YKQAFGLSAQNSTKLIAA 609
>gi|367027160|ref|XP_003662864.1| hypothetical protein MYCTH_2303986 [Myceliophthora thermophila ATCC
42464]
gi|347010133|gb|AEO57619.1| hypothetical protein MYCTH_2303986 [Myceliophthora thermophila ATCC
42464]
Length = 668
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/529 (44%), Positives = 320/529 (60%), Gaps = 14/529 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
VL VAEKPS+AK+VAG LS + R Y K Y F++ G P C + MT+V G
Sbjct: 4 VLCVAEKPSIAKAVAGHLSGGH-YQTSNTRDAYIKNYTFDFDF-GPPWGHCSVTMTAVKG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL ++F Y++W P L+ AP+ V D K I K +E++AR LV+W DCDR
Sbjct: 62 HLTTVEFPGDYKQWEYPPPDRLFDAPIMTVVSSDSKSIAKNIEDQARHASALVIWTDCDR 121
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I E+ + R N + ++RARFS + I A + L + DAV AR E+D
Sbjct: 122 EGEHIGSEIRDAARKGNARIQVKRARFSNVERAHILSAARRLTALDDRQVDAVSARIELD 181
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRF T+ L+ NL LSYG CQFPTLGFVV+RY+ ++ E FW
Sbjct: 182 LRIGYAFTRFLTLNLRPLG----GPLSNLTLSYGSCQFPTLGFVVDRYFRVKNFVPEPFW 237
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I H+ + F+W R LFD S VI+YE C+ TA VTKV+++ K+ P PL+
Sbjct: 238 GIKVMHERDGIQVGFNWSRHRLFDRMSVVILYERCLAARTAKVTKVQEKPTKKWKPLPLT 297
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K A+R+ RMS + M VAE LY GFISYPRTETD F G +L +V++Q
Sbjct: 298 TVELQKMATRFLRMSGQQAMTVAEKLYNKGFISYPRTETDRFDKGMDLRALVRKQTQDNR 357
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +AQ L+D G ++ P G HDDKAHPPIHP +++ + + ++YELV R FL
Sbjct: 358 WGSFAQALVD---GAFQQPRQGRHDDKAHPPIHPITYAAPAA-LDDNEKRVYELVTRRFL 413
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFI 485
AC S+ A G T VEI E F+ G ++L +NYLDVY +E+W G +P + G++F
Sbjct: 414 ACCSEDARGMATDVEILYGDETFTAHGVIVLERNYLDVYPYENWTGTAQLPRFTVGERFE 473
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ +R Y
Sbjct: 474 PTEAMVTEGKTSPPGYLTEADLIALMDANGIGTDATMAEHIEKIQERQY 522
Score = 45.8 bits (107), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT++G AL+ G+D M +E L KP LR ME MK + G +K VL L + +
Sbjct: 583 FIPTSLGVALIEGFDRMHFETSLGKPFLRKEMELKMKAICEGRTTKQVVLHESLSEYRQV 642
Query: 601 FLDAR 605
+ +R
Sbjct: 643 YEQSR 647
>gi|340959518|gb|EGS20699.1| DNA topoisomerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 625
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/532 (44%), Positives = 325/532 (61%), Gaps = 18/532 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSR--YNKIYEFNYSIRGQP---CHMLMTSV 64
VL VAEKPS+AK+VA LS G R + +R + K Y F++ G P C + MT+V
Sbjct: 4 VLCVAEKPSIAKAVATHLS---GGRYQSASTRDAHIKNYSFDFDF-GPPWGRCSVTMTAV 59
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL L+F Y +W P L+ APV +P+D K+I K +E+ AR L++W DC
Sbjct: 60 KGHLTTLEFPSDYNRWEYPPPERLFDAPVYTVIPKDNKNIAKNIEDLARSSNLLIIWTDC 119
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I E+ + + N ++ ++RARFS + I QA + LV ++ DAV AR E
Sbjct: 120 DREGEHIGSEIRDAAKKGNRYIEVKRARFSNVERAHILQAARRLVCLDERQVDAVAARIE 179
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRF T+ L+ L +SYG CQFPTLGFVV+RY+ ++ E
Sbjct: 180 LDLRIGYAFTRFLTLNLRTLGGPM----SQLTISYGSCQFPTLGFVVDRYFRVKNFIPEP 235
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW+I H+ + F+W R LFD + +I YE C+ A V KV+++E K+ P P
Sbjct: 236 FWSIKVMHERDGIKVNFNWARHRLFDRMTVIIFYERCLTAKFAKVMKVKEKETKKWKPLP 295
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL+K A+R+ M+ + M VAE LY GFISYPRTETD F G +L +V++Q
Sbjct: 296 LTTVELQKMATRFLGMTGQQAMTVAEKLYNKGFISYPRTETDRFDKGMDLKALVRKQTQD 355
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
WG +AQ LLD G ++ P G HDDKAHPPIHP ++S S ++YELV R
Sbjct: 356 QRWGQFAQHLLD---GGFQQPRQGKHDDKAHPPIHPITYAS-PSVLDDQEKRIYELVTRR 411
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQ 483
FLAC S+ A GA T +EI E F+ G ++ +NYLDVY +E+W G V +P + G++
Sbjct: 412 FLACCSEDAKGAATDIEILYGEETFTAHGVIVKERNYLDVYPYENWTGTVQLPKFTEGER 471
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
F PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ +R YA
Sbjct: 472 FEPTEAMVTEGKTSPPNYLTEADLIALMDANGIGTDATMAEHIEKIQERQYA 523
>gi|115386112|ref|XP_001209597.1| DNA topoisomerase III [Aspergillus terreus NIH2624]
gi|114190595|gb|EAU32295.1| DNA topoisomerase III [Aspergillus terreus NIH2624]
Length = 588
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/586 (41%), Positives = 336/586 (57%), Gaps = 40/586 (6%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV GHL LDF+ Y+ W SC P L+ APV + + DK I + + E+A+ C+ L +
Sbjct: 1 MTSVIGHLTSLDFESHYKSWLSCPPGALFEAPVHESIDSDKTAIAENIREQAKYCKALFI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
W DCDREGE+I EV + N ++++RARFS + A + L++ + A+AV
Sbjct: 61 WTDCDREGEHIGTEVRSQAKEGNPRIIVKRARFSNTEKAHVLTAARGLIELDDLQANAVA 120
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
AR E+DLRIGA+FTR QT+ LK H+ + D ++SYG CQFPTLGFVV+RY ++
Sbjct: 121 ARIELDLRIGAAFTRLQTLQLK--HLSAALAD--TLISYGSCQFPTLGFVVDRYLRVKNF 176
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+ E FW I H+ + F W R HLFD + ++ E C+ A VTKV Q+ K+
Sbjct: 177 KPETFWGIKVMHQRDGIKVNFLWKRVHLFDRAAVTVMMERCLLAKKAKVTKVNQKPTSKW 236
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMK------------------VAEDLYQAGFISYPR 342
P PL+T++L+ SRY R+ S+ MK VAE LY GFISYPR
Sbjct: 237 RPLPLTTVDLQMMGSRYLRLDSQKIMKVPLRNLILCYLADPCSFQVAEALYTKGFISYPR 296
Query: 343 TETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK 402
TETD F G +L +V++Q+ +WG YA+ LLD G +R P +G H+D+AHPPIHP
Sbjct: 297 TETDQFDKGIDLKKLVEKQLPDSNWGQYARGLLD---GGFRTPRAGRHNDRAHPPIHPIC 353
Query: 403 FSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462
+ S S S D K+YE VVR FLAC S+ A G T VEI E+F G ++L +NYL
Sbjct: 354 WVS-PSTLSADEKKVYEFVVRRFLACCSEDAKGQSTEVEIEYGDEMFHAKGLIVLERNYL 412
Query: 463 DVYRFESW-GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDAT 521
DVY ++ W +P + G+ F PT + G T PP L+E +L+ MD GIGTDAT
Sbjct: 413 DVYVYDKWESSQTLPPFQMGETFEPTEAKIFDGKTTPPNYLTEPELIGLMDANGIGTDAT 472
Query: 522 MHDHIKKLLDRFYAI-------KDANTRFAPTNIGEALVMGYDDM------GYELWKPNL 568
M +HI K+ R Y ++A PT +G ALV GYD++ L KP L
Sbjct: 473 MAEHIAKVKTRQYVAVHSRGSGRNAVKELIPTRLGIALVEGYDNVVAGLSDSISLSKPFL 532
Query: 569 RSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
R ME+ M+E+ G+K++ V+ L++ + F+ + + L EA
Sbjct: 533 RKEMEARMREICAGSKTRQQVVHESLEKYREVFIHTQRRINILKEA 578
>gi|392862729|gb|EAS36605.2| DNA topoisomerase III [Coccidioides immitis RS]
Length = 645
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/639 (38%), Positives = 365/639 (57%), Gaps = 45/639 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKP++AK+VA LS + ++Y K YEF +S G P + MTSV G
Sbjct: 5 ILCVAEKPAIAKAVAQHLSGGALRTVAIRGNQYVKNYEFQFSF-GPPWGNSSVTMTSVIG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL LDF+ +R W SC P L+ APV V +DK I + + +AR+ L +W DCDR
Sbjct: 64 HLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIRNKARQADALFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV N + ++RA+FS + +A +N + ++ +AV AR E+D
Sbjct: 124 EGEHIGSEVRTQAVGANPRIEVKRAKFSNTERAHVLRAARNPIALDERQINAVAARIELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGP-----------------CQFPTLGF 229
LRIGA+FTR T+ L + +R ++SYG CQFPTLGF
Sbjct: 184 LRIGAAFTRLLTLQLG--ALGGALSER--LISYGKETYVSPPLFPSDSAVGSCQFPTLGF 239
Query: 230 VVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATV 289
VV+RY+ ++ + E FW+I +H + T F+W RG+LFD + V+I+E C+ TA V
Sbjct: 240 VVDRYFRVKNFKPEPFWSIKVTHARDGKTVNFTWSRGNLFDRAAVVMIFERCLTAKTAKV 299
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS 349
TKV ++ K+ P PL+T++L+ S++ RM S+ MKVAE LY GFISYPRTETD F
Sbjct: 300 TKVNKKPTKKWRPLPLTTVDLQMMGSKFLRMDSQKVMKVAESLYTKGFISYPRTETDQFD 359
Query: 350 SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESR 409
G +L ++++QI WG Y+Q L+ AG ++ P SG H+D+AHPPIHP + + S
Sbjct: 360 KGIDLKKLIEKQIQDGVWGQYSQGLM---AGGFKQPRSGRHNDQAHPPIHPVTYVA-PSV 415
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFES 469
+ D ++YE VVR FLAC S A G + V+I E F G ++L +NYLD+Y ++
Sbjct: 416 LTADERRVYEFVVRRFLACCSDDAKGETSEVDIQYGDEKFHAQGLIVLERNYLDIYVYDK 475
Query: 470 W-GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKK 528
W +P + G+ F P + G T PP L+E +L+ MD GIGTDATM +HI K
Sbjct: 476 WESSQELPKFTVGEVFEPKEAKITEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIFK 535
Query: 529 LLDRFYAI--------KDANTRFAPTNIGEALVMGYDDMGYELW------KPNLRSMMES 574
+ DR Y +++ F PT +G ALV GYD++ +L KP LR ME
Sbjct: 536 IKDRQYVATRRRGGNGRNSVEEFIPTKLGVALVEGYDNLVLDLADCPSLCKPFLRKEMEL 595
Query: 575 DMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
M+++ G ++ V++ L+ + F+ + +++++L+
Sbjct: 596 RMRDICAGTTTRRQVVSENLEMYRRVFVHTQ-RRIEVLK 633
>gi|190347906|gb|EDK40263.2| hypothetical protein PGUG_04361 [Meyerozyma guilliermondii ATCC
6260]
Length = 616
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/605 (39%), Positives = 349/605 (57%), Gaps = 20/605 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTG 66
+ +L VAEKPS+AK V+ ILS +R+R +RY K Y+F + C + MTSV G
Sbjct: 1 MKILCVAEKPSIAKEVSQILSGG-SVRVRNSANRYVKNYDFTFEFPTTGRCDVTMTSVLG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF Y W+ C P L+ AP+ + V KKD+ K + EAR L++W DCDR
Sbjct: 60 HITNIDFPPAY-SWNKCVPGKLFSAPIIEVV--SKKDVYKNIANEARNASNLMIWTDCDR 116
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I E+ + ++ N L + R++FS L + A +N V + AV R
Sbjct: 117 EGEFIGHEIFQAAQSGNPRLRVDEIWRSQFSHLERSHVLHAARNPVKLDLNAVAAVGCRM 176
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
EIDLR+GA FTRF + LLK ++ ++ V+SYG CQFPTLGFVV+RY ++ SE
Sbjct: 177 EIDLRVGAGFTRFLSDLLK--RSGAIPLEKGQVVSYGTCQFPTLGFVVDRYTRVKNFISE 234
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW I+ K ++ A F+W GH+FD+ + Y+ C+Q ATVT + + + P
Sbjct: 235 PFWHISIRVKKDDKIAPFTWTTGHVFDHLYVFLAYQACLQHKEATVTSITTKPTSNWRPL 294
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K S +F+MS++ + AE LY GF+SYPRTETD F + +L ++Q Q
Sbjct: 295 PLTTVELQKDCSSFFKMSAKRALDAAEKLYNKGFLSYPRTETDKFPATMDLRSVIQTQSQ 354
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG YA LL G +R P +G HDDKAHPPIHP K+ + + S D K+YE VVR
Sbjct: 355 DSQWGNYASELLQ---GKFRQPRAGNHDDKAHPPIHPVKYVALSALDSADEKKIYEYVVR 411
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQ 482
FLAC S A G +T + E FS SG ++ +NYLD+Y ++ W V +P + G
Sbjct: 412 RFLACCSDDARGNQTKAIVQWGAEKFSASGLAVIERNYLDIYVYKKWSSTVELPNFQQGD 471
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA--IKDAN 540
+ T+ L G T PP ++E++L++ MD GIGTDAT+ DHI K+++R Y +K +
Sbjct: 472 RVKLTSSQLQEGKTSPPKYMTESELIALMDANGIGTDATIADHIDKIINRGYVVKVKQGS 531
Query: 541 TRFA-PTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
T + P+ G L+ G+D + + L KP LR +E+ +++V G SK VL +
Sbjct: 532 TEYILPSEFGMGLIQGFDAIELDNISLSKPFLRKQLETSLQQVVNGTASKQSVLDAIVHL 591
Query: 597 MKACF 601
K +
Sbjct: 592 YKQAY 596
>gi|452846702|gb|EME48634.1| hypothetical protein DOTSEDRAFT_67618 [Dothistroma septosporum
NZE10]
Length = 675
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/545 (44%), Positives = 324/545 (59%), Gaps = 17/545 (3%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSR-YNKIYEFNYSI-RGQPCHMLMTSV 64
P VL VAEKPS+AK+VA LS N+ + R Y K YEF Y+ + PC + MTSV
Sbjct: 2 PTKVLCVAEKPSIAKAVANHLSGNERAQPRNITGNVYIKNYEFQYNFPQWGPCDVTMTSV 61
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
TGH+M DFD ++R W+SCDP+ L+ A + V + K I K +E AR Q+L +W DC
Sbjct: 62 TGHMMASDFDSQHRGWYSCDPSALFDARIETFVKDQSKAIAKNIETRARYAQYLYIWTDC 121
Query: 125 DREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
DREGENI E+ + + L RARFS + + A +N V ++ A+AV
Sbjct: 122 DREGENIGVEIRDAAAKIKPDLKQPGRTVRARFSNIERAHVINAARNPVPLDEAQANAVF 181
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
AR EIDLRIGA FTR + F + V + +SYG CQFPTLGFVVERY ++
Sbjct: 182 ARMEIDLRIGACFTRNLS-----FTVQPVIHKQE-TISYGSCQFPTLGFVVERYLRVRNF 235
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
E FW I H+ + F W R HLFD VI++E C+ TA VTKV+ + K+
Sbjct: 236 VPETFWGIKVMHQKDGIKVNFKWSRNHLFDRMVVVILFERCLTARTARVTKVQTKPTSKW 295
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T+EL+K SR+ RM S+ M VAE LYQ+G+ISYPRTETD + G NL +VQ+
Sbjct: 296 KPLPLTTVELQKCGSRFLRMDSQTVMTVAEKLYQSGWISYPRTETDQYDRGMNLQALVQK 355
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q WG +AQ L A G + P +G ++DKAHPPIHP F + + +Q ++YE
Sbjct: 356 QTQGQAWGLFAQGL---ANGGFSWPRTGRNNDKAHPPIHPVNFVA-PTALNQQEQRVYEF 411
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYV 479
VVR FLAC S+ A G++T + I E FS SG +L +NYLDVY ++ W +P +
Sbjct: 412 VVRRFLACCSEDARGSKTDISILYGSETFSGSGLTVLQRNYLDVYPYDKWTSTQELPHFE 471
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ F+PT L G T PP L+E +L++ MD GIGTDATM +HI K+ +R Y A
Sbjct: 472 EGETFVPTEALLHEGQTSPPGYLTEPELIALMDTNGIGTDATMAEHIAKIKEREYVGTRA 531
Query: 540 NTRFA 544
TR A
Sbjct: 532 RTRQA 536
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ G+++MG++ L KP LR ME MK + G K++ +V+ ++Q +A
Sbjct: 591 FIPTTLGIALIEGFENMGFDVSLAKPFLRKEMEVKMKAICEGRKTRNEVVQETVEQYRAV 650
Query: 601 FLDARLKKVKLLEAM 615
++ + + L +A+
Sbjct: 651 YMRTQQRLEVLRQAV 665
>gi|448112756|ref|XP_004202179.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
gi|359465168|emb|CCE88873.1| Piso0_001663 [Millerozyma farinosa CBS 7064]
Length = 620
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/618 (38%), Positives = 359/618 (58%), Gaps = 20/618 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-CHMLMTSVTG 66
+ +L VAEKPS++K+V+ ILS + ++R R++Y K Y+F + G C + MTSV G
Sbjct: 1 MKILCVAEKPSISKAVSHILSGGKT-KVRNSRNKYVKNYDFKFDFPGVGLCDVTMTSVMG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF ++ W C+P L+ AP +V K++ + + EARRC L++W DCDR
Sbjct: 60 HITNIDFPTQF-SWGKCNPGRLFDAPTIDNV--SNKEVFENISTEARRCNRLMIWTDCDR 116
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I E+ N L + R++FS L I QA +N + + AV R
Sbjct: 117 EGEFIGHEIFSAAVKGNPSLRVEDIWRSQFSHLERSHILQAARNPIRLDMNSVHAVRCRM 176
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
EIDLR+GASFTRF T L + + + ++ +SYG CQFPTLGFVV+RY ++ E
Sbjct: 177 EIDLRVGASFTRFLTDLYRRTQVFPL--EKGGFISYGTCQFPTLGFVVDRYNRVKRFIPE 234
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+FW I+ + K + T TF W + H+FD +IY+ C++ A V ++ ++ KY P
Sbjct: 235 KFWYISITVKKDNKTETFHWTKNHVFDRLYLALIYQNCLKYENAEVVQLIERPTSKYRPL 294
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K S YF+MS++ + AE LY GF+SYPRTETD F +L ++Q+Q
Sbjct: 295 PLTTVELQKNCSMYFKMSAKRALDAAEKLYNKGFLSYPRTETDKFPPTMDLKAVIQKQTQ 354
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+ WG YA LL+ G +R+P +G HDDKAHPPIHP F E + D K+YELVVR
Sbjct: 355 NSTWGQYASELLN---GRFRSPRAGSHDDKAHPPIHPVNFVKLEMLDNADEKKVYELVVR 411
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQ 482
FLAC S+ A G ET + + E F+ S V+L +N+LDVY + +W +P + G+
Sbjct: 412 RFLACCSEDAKGKETKITLRWGTEEFTNSAIVVLERNFLDVYPYMAWKSTTPLPPLLRGE 471
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI---KDA 539
T + G T PP ++E++L++ MD GIGTDAT+ +HI K++ R Y + K+
Sbjct: 472 TIKVATSVMKEGKTSPPQHMTESELIALMDANGIGTDATIAEHIDKIISRGYVVKVRKNK 531
Query: 540 NTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
N P+ +G L+ G++D+ ++ L KP LR +E+ ++++ G K K V+ +
Sbjct: 532 NDFIIPSELGMGLIEGFNDLEFDNLSLSKPFLRKRLENCLQDIVSGTKVKEQVIQEIIFL 591
Query: 597 MKACFLDARLKKVKLLEA 614
K F + KL+ A
Sbjct: 592 YKQAFGLSVQNSTKLIAA 609
>gi|342186042|emb|CCC95527.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 913
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/598 (40%), Positives = 354/598 (59%), Gaps = 26/598 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
LNVAEKPSVAK ++ ILS N R SRYN ++EF+ + + HML TSV GHLM
Sbjct: 5 LNVAEKPSVAKEISFILS-NGTYRSTATHSRYNPVFEFDMNGK----HMLCTSVKGHLMT 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+F + + W + +L+ A + +HV + +K+ LE RR L LW+DCD EGEN
Sbjct: 60 DEFPPQAKNWTNYPIQELFTATLTRHVKPEMSAVKRNLETLGRRATTLGLWMDCDSEGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FEVI V VN + + RA FSAL R+I +A++NL PN+ ADAVDARQEIDLR+G
Sbjct: 120 ICFEVINVVSRVNSRIKICRAVFSALTKRDIFRAMENLRQPNRAVADAVDARQEIDLRVG 179
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A F+RFQT+ ++ VLS+GPCQ PTLGFVV R WE + E+++T+
Sbjct: 180 AVFSRFQTLRFRDMF-----SGMPRVLSFGPCQIPTLGFVVRRSWERKGFVPEDYFTLVL 234
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE----PTATVTKVRQQEKLKYPPYPLS 306
H + TF+ +RG ++D +A +++E ++E P A + +V ++ +++ PL+
Sbjct: 235 RHNN----TTFNSLRGSMYDLIAATLVFETMLEEARETPEAEIVEVIEKREVRRRHVPLA 290
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIVQEQIGHP 365
T+EL+K + + R++SE M AE LYQ G++SYPRTETDSF+ + L I Q +P
Sbjct: 291 TVELQKLCASHLRITSEQCMMWAESLYQEGYLSYPRTETDSFTMTDEELLEIAALQSTNP 350
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK-FSSGESRWSQDHYKLYELVVRH 424
+ + +L + P GGH D AHPPI+PTK + R + LY +VR+
Sbjct: 351 EVSGFVDAMLRDPQNKYCRPLDGGHSDNAHPPIYPTKPLHVKDDRRA----PLYNFIVRY 406
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLAC+S AVGA T V GE F+TSG V+L +++VY ++ W IP Y G++F
Sbjct: 407 FLACISPDAVGATTSVTAVFGGEKFTTSGTVVLENGWMEVYPYKKWYSSTIPLYKRGERF 466
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+PT L T PPP L+E DL+ M++ GIGTDAT+ HIK +LDR Y ++ +
Sbjct: 467 VPTDANLQKHRTSPPPNLTERDLIHLMNENGIGTDATIPQHIKTILDREY-VRREGSDLV 525
Query: 545 PTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G AL Y+ +G L +P LR+ E M +++ G +K DV+ ++ + F
Sbjct: 526 PTPLGIALASAYEVIGLVSLLQPQLRAQTELAMDDIAKGRATKQDVVDASVRLYREIF 583
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ +C C E +M L+ GN + C FP C + LP + V + C SC
Sbjct: 736 ITRCTACNEHDMRLRGGGIGNFL-ACRGFPHCTFCINLPRAKRVIPVQGDRCGSCN---A 791
Query: 695 YLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICG 733
L+QF+F + PG C+ CD L++ I + G
Sbjct: 792 VLLQFEFGGIQTVPGVVEGEKACV-LCDTRLQEYITMKG 829
>gi|149241681|ref|XP_001526340.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450463|gb|EDK44719.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 619
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 247/609 (40%), Positives = 355/609 (58%), Gaps = 28/609 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI--RGQPCHMLMTSVT 65
+ VL VAEKPS+AK VA IL + + +R +++Y K Y+F + GQ C + MTSV
Sbjct: 1 MKVLCVAEKPSIAKEVASILGGGR-VEVRNSKNKYIKNYDFKFLFPQSGQ-CDVTMTSVV 58
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ LDF Y W C + L+ A + + K+D+ + +EAR L++W DCD
Sbjct: 59 GHITNLDFPPEYL-WGKCAASRLFTAEIVTKIT--KQDVFDNISKEARNSDQLMIWTDCD 115
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE I E+ + R N L LR RARFS L + +A ++ + + A AV R
Sbjct: 116 REGEFIGKEIFDAARKGNPRLTLRNVWRARFSHLDKSHVLRAARSPSELDMKSAAAVACR 175
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+D R+G SFTR T LK S T D V+SYG CQFPTLGFVV+RY +Q+ +
Sbjct: 176 MEVDFRVGLSFTRLLTDSLKA----SRTIDTKDVVSYGTCQFPTLGFVVDRYKRVQSFKP 231
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E FW I + E+ TF+W RGH+FD + YE C+Q T+TK+ + + P
Sbjct: 232 EPFWFIEPTVWKEKKKTTFNWCRGHVFDRFYVALQYESCLQHEFGTITKLETKRTTNWRP 291
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+K SRYF+MS++ ++ AE LY GF+SYPRTETD + S + GI+++Q
Sbjct: 292 LPLTTVELQKDCSRYFKMSAKAALEAAESLYNRGFLSYPRTETDKYPSSMDFSGILEKQK 351
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG Y LL GL P +G HDD AHP IHP + S ++ + + K+YE VV
Sbjct: 352 QDSRWGQYTLELLQR--GL-EAPRNGSHDDHAHPAIHPVNYVSLDTLTNANEKKVYEYVV 408
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S+ AVG+ T+ + E F+TSG ++L +NYLD++ ++ W +PT+ G
Sbjct: 409 RRFLACCSKDAVGSMTLATLKWGDEFFTTSGLMVLERNYLDIFIYKKWESSKQLPTFQEG 468
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+Q + + G T PP L++E +L++ MD GIGTDAT+ +HI K+L R Y IK
Sbjct: 469 EQVKISNGVMKEGKTSPPSLMTEPELIALMDVNGIGTDATIAEHIDKILSRKYVIKQKKG 528
Query: 542 R---FAPTNIGEALVMGYDDM---GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+ P+ +G L+ G+D M G L KP LR +ES ++E+ G K+K +V ++
Sbjct: 529 KTDFIIPSGLGIGLIEGFDKMEFNGISLSKPFLRKSLESSLQEICGGLKTKVEV----VE 584
Query: 596 QMKACFLDA 604
MK+ +LDA
Sbjct: 585 DMKSLYLDA 593
>gi|85001333|ref|XP_955385.1| DNA topoisomerase iii [Theileria annulata strain Ankara]
gi|65303531|emb|CAI75909.1| DNA topoisomerase iii, putative [Theileria annulata]
Length = 607
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/617 (38%), Positives = 351/617 (56%), Gaps = 65/617 (10%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVLNVAEKPSVAK++ ILS R S+ N +Y F + G C M TSV GH
Sbjct: 2 LNVLNVAEKPSVAKNITEILSCGNATR-ELTHSKTNPVYSFPHWFEGNMCKMYFTSVKGH 60
Query: 68 LMELDFDERYRKWHSCDPADLY--------HAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
LM LDFD+ YR WH DL+ H H P + ++ ++ +
Sbjct: 61 LMNLDFDQPYRSWHRTAIIDLFTGKFYQDLHIMSSTHSPIHHERLQGYRKKHIK------ 114
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALI----------DREIHQAVQNLV 169
I V+EVC VN +++++RA FS++ + +I A NL
Sbjct: 115 -----------IRKNVLEVCFRVNKNMIVKRAIFSSVTSQFSFHYWNSESDIEHACVNLK 163
Query: 170 DPNQWFAD--AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTL 227
PN+ A+ AV+ RQEIDLRIG++ TR+ T+ K + D + +LSYG CQ PTL
Sbjct: 164 QPNKNLANVGAVETRQEIDLRIGSAITRYLTLKYK-----TQIDTKAAILSYGTCQLPTL 218
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTA 287
GFVVER+ I+ SE FWTI E T + + +YE C+Q P+
Sbjct: 219 GFVVERFILIENFVSEPFWTIQV-----EVTQL------------AVLTLYENCIQNPSG 261
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDS 347
+ KV ++E K+PP PL TIE+ K SRY R+SS M++AE LY GFISYPRTET+
Sbjct: 262 IIRKVLKKEVRKHPPLPLDTIEMNKDVSRYLRISSHKCMQLAEGLYNKGFISYPRTETNV 321
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
F S +L I+ + P++ Y LL+ + P G ++D+AHPPIHP + +
Sbjct: 322 FPSSIDLKSIIGKLSSVPEFSEYTNTLLNEDG--FHEPTKGNNNDEAHPPIHPVNSLTRD 379
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
S++H+ LYE + R FLAC S+ ++G ++ V + I+GE+F+ G +I +N+L++Y++
Sbjct: 380 RAESEEHWLLYEYITRRFLACCSKDSIGHQSNVILEISGELFNLKGLIIQERNWLNIYKY 439
Query: 468 ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
+W +IP + Q+ +P + L G T+PP LLSE++L+ M+K IGTDATMH+HI+
Sbjct: 440 TTWEAKLIPNFSENQEILPNEIILKDGATQPPDLLSESNLIDLMNKNAIGTDATMHEHIQ 499
Query: 528 KLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNK 584
K+ DRFY IKD RF PTN+G+A+ G+ + Y+ L KP LR+ ME DM ++S+G K
Sbjct: 500 KIQDRFYCIKDDKLRFVPTNLGKAIYYGFKEYNYQNIDLTKPILRANMERDMSDISIGIK 559
Query: 585 SKADVLANCLQQMKACF 601
K V+ N + +++ F
Sbjct: 560 DKDQVVLNYVNLLRSIF 576
>gi|45200996|ref|NP_986566.1| AGL101Cp [Ashbya gossypii ATCC 10895]
gi|44985766|gb|AAS54390.1| AGL101Cp [Ashbya gossypii ATCC 10895]
gi|374109812|gb|AEY98717.1| FAGL101Cp [Ashbya gossypii FDAG1]
Length = 631
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 248/613 (40%), Positives = 351/613 (57%), Gaps = 36/613 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR----GQPCHMLMTS 63
+ V+ VAEK S+AK+VAGIL R R S+Y K Y+F Y+ G+ C + MT+
Sbjct: 1 MRVVCVAEKNSIAKAVAGILGGG-NTRTRSSPSKYIKNYDFTYNFAWAQGGERCEVTMTA 59
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHLM DF +Y W+ CDP +L+ A + + ++I + + E R ++L++W D
Sbjct: 60 VAGHLMSQDFGPQY-GWNKCDPRELFGAEI---LETPTREIAENITRECRGAEYLMIWTD 115
Query: 124 CDREGENIAFEVIEVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
CDREGE I +E+ V N LV + RA FS L I +A + + DAV
Sbjct: 116 CDREGEAIGWEIARVAMQANTRLVRSRIHRAVFSHLGREHIMRAANSPSQIDMNAVDAVK 175
Query: 181 ARQEIDLRIGASFTRFQTMLLK---NFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AR EIDLR G +FTR T L+ + + + + ++SYG CQFPTLGFVV+RY I
Sbjct: 176 ARSEIDLRAGYAFTRLLTATLRAKVEQDMPAANEKKRALISYGTCQFPTLGFVVDRYERI 235
Query: 238 QAHESEEFWTIN-------CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEP--TAT 288
Q SE FW + C+ K TFSW RGHLFD + +YE C++ A
Sbjct: 236 QNFVSEGFWYLQLLIEDPQCARK-----VTFSWDRGHLFDRLCVLCLYETCIEATGNKAL 290
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF 348
V+ V ++ KY P PL+T+EL+K S++ RMS++ ++ AE LYQ GFISYPRTETD F
Sbjct: 291 VSSVTAKDTSKYRPLPLTTVELQKNCSKFLRMSAKQSLDAAEKLYQKGFISYPRTETDVF 350
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLD-HAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
S NL G+VQ+Q H WG YA +LL + ++ P G HDD+AHPPIHP + +
Sbjct: 351 SKQANLQGLVQQQTEHSQWGAYASKLLSGEGSNRFQWPREGKHDDQAHPPIHPVLCAQPD 410
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
+ S D ++YE VVRHFLAC SQ A G + +++ E FS +G + +N+L++Y +
Sbjct: 411 ANLSVDEKRVYEYVVRHFLACCSQDAKGRSSKIKLKWHTEEFSATGLQVHEENFLEIYTY 470
Query: 468 ESW-GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHI 526
+ W +PT Q + SG T PP ++E++L+ MD GIGTDAT+ +HI
Sbjct: 471 QKWTSSEQLPTLPLNSQVEFAKAEMKSGKTSPPKYITESELIMLMDANGIGTDATIAEHI 530
Query: 527 KKLLDRFYAIKDA---NTRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSV 581
+K+ +R Y + N F PT +G +LV G++D+G E KP LR ME D+K +
Sbjct: 531 EKIQERQYIKAEGTAKNKVFKPTMLGRSLVHGFEDIGLEESFAKPFLRRDMELDLKRICE 590
Query: 582 GNKSKADVLANCL 594
G K + VLAN +
Sbjct: 591 GTKDRNSVLANLI 603
>gi|452822724|gb|EME29741.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 646
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/623 (40%), Positives = 348/623 (55%), Gaps = 46/623 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRI------------------REGRSRYNKIYEFNYS 51
+LNVAEKPS A+ ++ L+K + +++ RE SR K+YEF
Sbjct: 4 ILNVAEKPSAARELSHALAKKENIKVSVFLSTAMCCLLNEAHNRREIGSRL-KVYEFELD 62
Query: 52 IRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLY---HAPVRKHVPEDKKDIKKTL 108
+ + M+ ++V GH+ LDF E YR W SC+ L P++++VPEDKK ++ L
Sbjct: 63 LDHEKVTMVFSNVAGHIKALDFHENYRGWDSCEQVALLDPSKTPIKEYVPEDKKFLENNL 122
Query: 109 EEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVL----RRARFSALIDREIHQA 164
+ EAR C L LWLDCD EGE IA+EV+++C+ VN + +RARFSA+ ++ A
Sbjct: 123 KNEARSCCKLFLWLDCDSEGEKIAYEVLDICQQVNMSFRIPDNVKRARFSAITPQDARNA 182
Query: 165 VQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQF 224
+QNL + V RQEIDLR GA+FTRF T ++N + D+ +LSYGPCQF
Sbjct: 183 LQNLTSLHYPTVSMVSTRQEIDLRAGAAFTRFLTKFIQNEFRVPLKGDKKAILSYGPCQF 242
Query: 225 PTLGFVVERYWEIQAHESEEFW----TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEM 280
PTLG VV+R I+A + F+ TI+C S+ W R HLFD ++YE+
Sbjct: 243 PTLGLVVDRLLTIRAFQPRLFYYLELTISC-ESSDGDKLVLIWERKHLFDRYCCALLYEL 301
Query: 281 C--------VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDL 332
C Q A + KVR+ + P PL T+EL++ ASR F SS+ TM+ AE L
Sbjct: 302 CYSSLLRSNFQIAIADIKKVRKSRR---RPLPLDTVELQRLASRVFFFSSDTTMQAAERL 358
Query: 333 YQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDD 392
Y G+ISYPRTET+ F S NL +V Q WG + Q++++H + +P G DD
Sbjct: 359 YSEGYISYPRTETNIFPSTINLSKLVLLQQNDQKWGGFVQKIMEH--WIHYSPRQGTKDD 416
Query: 393 KAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTS 452
KAHPPIHPTK + E ++ +YELV R FLAC S A G ET+V +N+ E F
Sbjct: 417 KAHPPIHPTKPAPREGFKDKECDAIYELVTRRFLACCSIDAKGYETVVTVNVGFESFHIH 476
Query: 453 GRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
G I YL+VY ++ W V+PT + G +L L G T P LSE+DLL M
Sbjct: 477 GLSIEEAGYLEVYPYDHWSERVLPTELEKGTTIRVVSLMLKEGSTSAPKPLSESDLLGLM 536
Query: 512 DKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSM 571
DK GIGTDATM +HI+K+ R Y K N F P +G ALV ++ L +P RS
Sbjct: 537 DKYGIGTDATMAEHIRKIQHREYVTKQGNL-FYPMALGLALVEAFEACEAYLARPTCRSE 595
Query: 572 MESDMKEVSVGNKSKADVLANCL 594
E D++++ G + +DVL L
Sbjct: 596 QEKDLRQIGQGIRDASDVLYTAL 618
>gi|212527998|ref|XP_002144156.1| DNA topoisomerase III, putative [Talaromyces marneffei ATCC 18224]
gi|210073554|gb|EEA27641.1| DNA topoisomerase III, putative [Talaromyces marneffei ATCC 18224]
Length = 662
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/639 (37%), Positives = 359/639 (56%), Gaps = 42/639 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+L VAEKP++AK+VA LS Q + I + N ++ FN+ C + MTSV GH
Sbjct: 6 ILCVAEKPAIAKAVAQHLSGGSFQTINIHGQQYVKNYVFSFNFGGAWGNCEVTMTSVIGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L L+F + Y+ W SC P+ L+ PV ++V DK I + ++++A+ C+ L +W DCDRE
Sbjct: 66 LTGLEFGKEYKGWTSCPPSLLFEVPVFENVDTDKLSIAENIKKQAQYCKALFIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I EV + R N + ++RARFS + +A + ++ ++ A AV AR E+DL
Sbjct: 126 GEHIGTEVKKQARLGNARIEVKRARFSNTERAHVLRAAREPIELDEKQASAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+GA+FTR QT+ L+ + S D + SYG CQFPTLGFVV+RY +Q + E FW
Sbjct: 186 RVGAAFTRLQTLQLQT--LGSPLDQGPI--SYGSCQFPTLGFVVDRYLRVQNFKPEPFWA 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I HK ++ F+W R LFD + ++ E C+ A VTKV ++ K+ P PL+T
Sbjct: 242 IAVIHKRDDINVNFNWRRVRLFDRAAVTVMLERCLDAKNAKVTKVTKKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ S+Y RM+S M++AE LY GFISYPRTETD F +L ++++Q+ W
Sbjct: 302 VDLQMMGSKYLRMTSHQVMQIAETLYTRGFISYPRTETDQFDKAIDLKKLIEKQVPDRTW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YAQ LLD G +R P +G ++D+AHPPIHP + G S + ++++ VVR FLA
Sbjct: 362 GQYAQGLLD---GNFRTPRAGKNNDQAHPPIHPI-CAVGSSALKDEEKRVFDFVVRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C S+ A G + VEI E F G ++L +NYLD+Y ++ W +P + + F P
Sbjct: 418 CCSEDAKGQTSEVEIQYGDEYFHAKGLIVLERNYLDIYVYDKWESSTQLPHFEVDEVFEP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT----- 541
T + G T PP L+E +L++ MD GIGTDATM +HI K+ +R Y +T
Sbjct: 478 TEAKITEGKTTPPTYLTEPELIALMDANGIGTDATMAEHINKIKERQYVAARPHTGGGNN 537
Query: 542 --------------------RFAPTNIGEALVMGYDDMGY------ELWKPNLRSMMESD 575
PT +G ALV GYD++ L KP+LR ME
Sbjct: 538 EAGGRGRGRGRAAASNTGVQELIPTRLGVALVEGYDNVVAGLADCPSLSKPHLRKEMEQL 597
Query: 576 MKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
M+++ G +++ +V+ L + F+ + + L EA
Sbjct: 598 MRDICNGTRTRTEVVEQSLDMYRGVFIQTQRRIDMLKEA 636
>gi|242785292|ref|XP_002480564.1| DNA topoisomerase III, putative [Talaromyces stipitatus ATCC 10500]
gi|218720711|gb|EED20130.1| DNA topoisomerase III, putative [Talaromyces stipitatus ATCC 10500]
Length = 660
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/639 (37%), Positives = 357/639 (55%), Gaps = 42/639 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKN--QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+L VAEKP++AK+VA LS Q + I + N ++ FN+ C + MTSV GH
Sbjct: 6 ILCVAEKPAIAKAVAQHLSGGSMQTMNIHGQQYVKNYVFSFNFGGAWGNCEVTMTSVIGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L L+F + Y+ W SC P+ L+ PV ++V DK I ++++A+ C+ L +W DCDRE
Sbjct: 66 LTGLEFGKEYKGWTSCPPSLLFEVPVFENVDSDKLSIADNIKKQAQYCKALFIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I EV + R N + ++RARFS + +A + ++ ++ A+AV AR E+DL
Sbjct: 126 GEHIGTEVKKQARLGNARIEVKRARFSNTERAHVLRAAREPIELDEKQANAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+GA+FTR QT+ L+ + S D + SYG CQFPTLGFVV+RY +Q + E FW
Sbjct: 186 RVGAAFTRLQTLQLQT--LGSPLDQGPI--SYGSCQFPTLGFVVDRYLRVQNFKPEPFWA 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I HK ++ F+W R LFD + ++ E C+ A VTKV ++ K+ P PL+T
Sbjct: 242 IAVVHKRDDINVNFNWRRVRLFDRAAVTVMLERCLDAKDAKVTKVTKKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ S+Y RM+S M++AE LY GFISYPRTETD F +L ++++Q+ W
Sbjct: 302 VDLQMMGSKYLRMTSHQVMQIAETLYTRGFISYPRTETDQFDKAIDLKKLIEKQVPDRTW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YAQ LLD G +R P +G ++D+AHPPIHP + S + ++++ VVR FLA
Sbjct: 362 GQYAQGLLD---GNFRTPRAGKNNDQAHPPIHPI-CAVAPSALKDEEKRVFDFVVRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIP 486
C S A G + VEI E F G ++L +NYLD+Y ++ W +P + G+ F P
Sbjct: 418 CCSDDAKGQTSEVEIQYGDEYFHAKGLIVLERNYLDIYVYDKWESSTQLPHFEVGEVFEP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT----- 541
T + G T PP L+E +L++ MD GIGTDATM +HI K+ +R Y T
Sbjct: 478 TEAKITEGKTTPPTYLTEPELIALMDANGIGTDATMAEHINKIKERQYVAARPRTGASNN 537
Query: 542 --------------------RFAPTNIGEALVMGYDDMGY------ELWKPNLRSMMESD 575
PT +G ALV GYD++ L KP+LR ME
Sbjct: 538 EAGGRGRGRGRAAGGNTGVQELIPTRLGVALVEGYDNVVAGLADCPSLSKPHLRKEMEQL 597
Query: 576 MKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
M+++ G +++ +V+ L + F+ + + L EA
Sbjct: 598 MRDICNGTRTRTEVVEQSLDMYRGVFIQTQRRIDMLKEA 636
>gi|326434142|gb|EGD79712.1| DNA topoisomerase III [Salpingoeca sp. ATCC 50818]
Length = 1137
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 271/736 (36%), Positives = 380/736 (51%), Gaps = 92/736 (12%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L VAEKP+VA+ +AGIL+ G + +++Y ++YEF I GQ + +T+V GHLM
Sbjct: 4 ALMVAEKPAVARGIAGILAP--GSTSKSTQAQYVRLYEFQTHINGQMWDIRLTAVCGHLM 61
Query: 70 ELDFDERYRKWHSCDPADLYHAPVR--KHVPEDKKDIKK----TLEEEARRCQWLVLWLD 123
DFD+ +RKW S P L+ AP++ H D D K L+ R CQ +++ D
Sbjct: 62 GWDFDDAHRKWRSSPPESLFDAPLQMTSHGGGDNGDNNKKILGVLQRHVRGCQMVLIATD 121
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
DREGENI FE+IE CR N + +R RFSA+ EI+ +++NL P+Q +D + +
Sbjct: 122 SDREGENIGFEIIEACRKTNKRFIAKRMRFSAVTPAEINNSLRNLTPPDQRLSDYRERER 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
F+ E +W I A
Sbjct: 182 ---------------------------------------------FIPEDFWRIIA---- 192
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL----- 298
H+ EE T F+W R ++D + E+C ATVT V + ++
Sbjct: 193 -------KHRCEEMTVDFNWSRYRVYDEDVCSVFLELCEDAKIATVTNVTGEFEMCRPRD 245
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
K+ P L+T EL+K ASR FRM+ + AE LYQ G ISYPRTETD F NL +V
Sbjct: 246 KWRPVGLTTTELQKIASRRFRMAPTEALSTAESLYQKGLISYPRTETDMFDKSINLTRLV 305
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
+ H +WG +AQ L+ +P +G + D+AHPPIHPTK + + S K+Y
Sbjct: 306 ENLTAHTEWGAFAQTLVPPNGAP--SPRNGRNTDEAHPPIHPTKNIAPAALASDKERKIY 363
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPT 477
ELV RHFLACVS+ A G ET V I AGE F G I + YL+VY F+SW G +IP
Sbjct: 364 ELVCRHFLACVSRNAKGRETTVTITAAGETFVAKGLAIHDRGYLEVYHPFDSWKGKMIPD 423
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
Y GQQF P + SG T P LLSEADLL+ M K IGTDATM +HI+ + R Y
Sbjct: 424 YSVGQQFEP-DFQMQSGETVAPKLLSEADLLTLMAKYEIGTDATMAEHIRTIQQRHYVEL 482
Query: 538 DANTRFAPTNIGEALVMGYDDMGYEL--WKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
PT +G ALV GYD M + + +P+LR ME++MK + G SK DV+ + ++
Sbjct: 483 TPQRELVPTTLGIALVNGYDAMSFTISVSRPDLRREMEANMKRICRGQISKDDVIRDGIE 542
Query: 596 QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEV---VRQCGICQESNMVLKKSR 652
+ + F + + KL AM G GEV VR+C C +++ VL+++
Sbjct: 543 KYRNVFSVVKREVHKLDAAMAEQL-----GPPNGRPGEVPVAVRRCPACNQADQVLRRTA 597
Query: 653 DGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFN- 711
G M+GC +P CR +VWL +++E AV +TC C ++ KF+ + +PP
Sbjct: 598 QGKYMIGCTRYPACRASVWLQ-NLAECAVDADTCARCG---ATKLKMKFKPNTLPPYIQR 653
Query: 712 --VNHLGCIGGCDETL 725
N + C+ CD L
Sbjct: 654 GRSNIVACL--CDSEL 667
>gi|452989907|gb|EME89662.1| hypothetical protein MYCFIDRAFT_193524 [Pseudocercospora fijiensis
CIRAD86]
Length = 773
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 246/620 (39%), Positives = 337/620 (54%), Gaps = 67/620 (10%)
Query: 43 NKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK 102
N + FN+ GQ C + MTSV GHLM DF+ RY+ W+SCDP L+ A + V EDKK
Sbjct: 141 NYKFTFNFPDWGQ-CEVTMTSVLGHLMMHDFERRYKGWNSCDPGVLFEAQIETFVAEDKK 199
Query: 103 DIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV---LRRARFSALIDR 159
+ +E +AR ++L +W DCDREGENI E+ N L + RARFS + +
Sbjct: 200 PVADNIERQARGVRYLYIWTDCDREGENIGAEIRSCALKTNPGLSNGRIVRARFSNIEKQ 259
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSY 219
+ A + + A+AV AR E+DLRIGASFTR ++ L+ + + V+SY
Sbjct: 260 HVLNAARRPGTLDDAQANAVYARMELDLRIGASFTRKLSIGLQ--EMLGREPGKGSVISY 317
Query: 220 GPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYE 279
GPCQFPTLGFVVERY+ +Q E FW I H+ + F+W R HLF+ VI++E
Sbjct: 318 GPCQFPTLGFVVERYFRVQNFVPEPFWGIKVMHEKDGVKVKFNWARQHLFNRMIVVILFE 377
Query: 280 MCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFIS 339
C+ A VTKV+ + K+ P PL+T+EL+K SR+ R++S+ M +AE LYQ GFIS
Sbjct: 378 RCLHARLARVTKVQTKPTSKWRPLPLTTVELQKCGSRFLRLNSQTVMNIAEGLYQRGFIS 437
Query: 340 YPRTETDSFSSGTNLHGIVQEQI-GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
YPRTETD F G NL IVQ+Q G W YAQ L++ G + P +G H+DKAHPPI
Sbjct: 438 YPRTETDQFDRGMNLQAIVQKQANGQAAWSQYAQHLMN---GGFVQPRNGNHNDKAHPPI 494
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
HP F++ S S D ++YE V R FLAC S A G++T + I E F+ SG +L
Sbjct: 495 HPVNFAAA-SVLSSDERRVYEFVCRRFLACCSDDAKGSKTEISILYGSETFNASGLTVLR 553
Query: 459 KNYLDVYRFESW-GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
+NYLDVY ++ W +P + G+ F PT + G T P L+E +L++ MD GIG
Sbjct: 554 RNYLDVYPYDKWTSSQELPDFREGETFEPTEANIHEGQTSAPGYLTEPELIALMDANGIG 613
Query: 518 TDATMHDHIKKLLDRFYAIKDANTR----------------------------------- 542
TDATM +HI + R Y + R
Sbjct: 614 TDATMAEHIATIKTREYVMTRPRGRQAGQDAVEMSSEDDEPAGGGRGRGRGRGRGGRGRG 673
Query: 543 ------------------FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVG 582
F P+ +G AL+ GY+ MG+E L +P LR ME MK V G
Sbjct: 674 RGRGGRGGGSERTSGVEEFIPSTLGMALIQGYEQMGHEISLARPFLRKEMELKMKAVCEG 733
Query: 583 NKSKADVLANCLQQMKACFL 602
++K DV+ ++Q +A +L
Sbjct: 734 RRTKMDVVQETIEQYRAVYL 753
>gi|322702147|gb|EFY93895.1| DNA topoisomerase III [Metarhizium acridum CQMa 102]
Length = 689
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/692 (37%), Positives = 366/692 (52%), Gaps = 100/692 (14%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSV 64
+ VL VAEKPS++K+VAG LS ++ R++Y K Y F++ GQ C + MT V
Sbjct: 1 MRVLCVAEKPSISKAVAGHLSGG-SMQTHNTRNQYIKNYSFDFDF-GQALGQCSVTMTCV 58
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAP---------VRKHVP-----------EDKKDI 104
TGHL ++F Y+ W P L++AP V HV +DKK I
Sbjct: 59 TGHLTNVEFTSEYKNWSYPPPETLFNAPIVTSIHDVCVDAHVNDNGFMADWLENQDKKSI 118
Query: 105 KKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQA 164
K L ++AR + LV+W DCDREGE+I E+++ R N + ++RA+FS + + A
Sbjct: 119 AKNLADQARYARLLVIWTDCDREGEHIGQEIVDAARKGNASIQVKRAKFSNVERAHVLSA 178
Query: 165 VQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFH--IDSVTDDRNLVLSYG-- 220
+ LVD ++ DAV R E+DLRIG +FTRF T L+ ++S+T LSYG
Sbjct: 179 ARRLVDLDKKQVDAVSTRIELDLRIGYAFTRFMTNSLRPLGGPMESLT------LSYGEQ 232
Query: 221 ---------PCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDY 271
+ L F +RY+ ++ E FW+I+ H + FSW R LFD
Sbjct: 233 KTQEQEKWSSSKIRPLTF--DRYFRVKNFIPEPFWSISLMHNRDGKNVNFSWERNRLFDR 290
Query: 272 TSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAED 331
+ +I+YE C+ TA V V+++ +Y P PL+T+EL+K A+R RMS + M +AE
Sbjct: 291 MTTIILYERCLLAKTAKVINVQEKPTRRYKPLPLTTVELQKAATRLLRMSGQQAMTIAEG 350
Query: 332 LYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHD 391
LY GFISYPRTETD F G NL +VQ+Q WG +AQ L++ G ++ P G HD
Sbjct: 351 LYNKGFISYPRTETDRFDKGMNLKALVQKQSPDQRWGQFAQNLVN---GAFKQPREGRHD 407
Query: 392 DKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFST 451
DKAHPPIHP +++ S S D LYE VVR FLAC S+ A+G T V++ E F +
Sbjct: 408 DKAHPPIHPITYAA-PSVLSPDEGLLYEYVVRRFLACCSEDALGMATTVDLQYGDEFFGS 466
Query: 452 SGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
G ++L +NYLDV+ ++ W +P + G+ F PT + G T PP L+EADL++ M
Sbjct: 467 HGVIVLERNYLDVFVYDKWDNHELPRFARGEFFQPTEAIMSEGKTSPPSHLTEADLIALM 526
Query: 512 DKAGIGTDATMHDHIKKLLDRFYAIKDANT------------------------------ 541
D GIGTDATM +HI+K+ DR Y N+
Sbjct: 527 DANGIGTDATMAEHIQKIQDREYVATVGNSGAMASEDDDGVQDRASSGRGRGTGRARGGR 586
Query: 542 -----------------RFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVG 582
F PT +G AL++GYD MG+E L KP LR ME MK + G
Sbjct: 587 AARGTSTSSSGRRGGVRVFIPTQLGVALILGYDRMGFETSLGKPFLRKEMELKMKAICEG 646
Query: 583 NKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
+K VL + Q + F+ + +K+ +L A
Sbjct: 647 RTTKEVVLRESITQYRQVFMQTQ-EKLDVLRA 677
>gi|146415324|ref|XP_001483632.1| hypothetical protein PGUG_04361 [Meyerozyma guilliermondii ATCC
6260]
Length = 616
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/605 (39%), Positives = 347/605 (57%), Gaps = 20/605 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTG 66
+ +L VAEKPS+AK V+ ILS +R+R +RY K Y+F + C + MTSV G
Sbjct: 1 MKILCVAEKPSIAKEVSQILSGGL-VRVRNSANRYVKNYDFTFEFPTTGRCDVTMTSVLG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF Y W+ C P L+ AP+ + V KKD+ K + EAR L++W DCDR
Sbjct: 60 HITNIDFPPAY-SWNKCVPGKLFSAPIIEVV--SKKDVYKNIANEARNASNLMIWTDCDR 116
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I E+ + + N L + R++FS L + A +N V + AV R
Sbjct: 117 EGEFIGHEIFQAAQLGNPRLRVDEIWRSQFSHLERSHVLHAARNPVKLDLNAVAAVGCRM 176
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
EIDLR+GA FTRF + LLK ++ ++ V+SYG CQFPTLGFVV+RY ++ E
Sbjct: 177 EIDLRVGAGFTRFLSDLLK--RSGAIPLEKGQVVSYGTCQFPTLGFVVDRYTRVKNFILE 234
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW I+ K ++ A F+W GH+FD+ + Y+ C+Q ATVT + + + P
Sbjct: 235 PFWHISIRVKKDDKIAPFTWTTGHVFDHLYVFLAYQACLQHKEATVTSITTKPTSNWRPL 294
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K S +F+MS++ + AE LY GF+SYPRTETD F + +L ++Q Q
Sbjct: 295 PLTTVELQKDCSSFFKMSAKRALDAAEKLYNKGFLSYPRTETDKFPATMDLRSVIQTQSQ 354
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG YA LL G +R P +G HDDKAHPPIHP K+ + + S D K+YE VVR
Sbjct: 355 DSQWGNYASELLQ---GKFRQPRAGNHDDKAHPPIHPVKYVALSALDSADEKKIYEYVVR 411
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQ 482
FLAC S A G +T + E FS SG ++ +NYLD+Y ++ W V +P + G
Sbjct: 412 RFLACCSDDARGNQTKAIVQWGAEKFSASGLAVIERNYLDIYVYKKWLSTVELPNFQQGD 471
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA--IKDAN 540
+ T+ L G T PP ++E++L++ MD GIGTDAT+ DHI K+++R Y +K +
Sbjct: 472 RVKLTSSQLQEGKTSPPKYMTESELIALMDANGIGTDATIADHIDKIINRGYVVKVKQGS 531
Query: 541 TRFA-PTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
T + P+ G L+ G+D + + L KP LR +E+ +++V G SK VL +
Sbjct: 532 TEYILPSEFGMGLIQGFDAIELDNISLSKPFLRKQLETSLQQVVNGTASKQSVLDAIVHL 591
Query: 597 MKACF 601
K +
Sbjct: 592 YKQAY 596
>gi|346327587|gb|EGX97183.1| DNA topoisomerase III [Cordyceps militaris CM01]
Length = 612
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/476 (45%), Positives = 298/476 (62%), Gaps = 9/476 (1%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MT+V GHL L+F ++ W P L+HAPV V +DKK+I + L E+AR + LV+
Sbjct: 1 MTAVIGHLTNLEFTPEHKNWSFPPPESLFHAPVVTSVYDDKKNIAQNLAEQARFARLLVI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
W DCDREGE+I E+++ + N L ++RARFS + + A L++ ++ +AV
Sbjct: 61 WTDCDREGEHIGQEIVDAAKKGNAQLQVKRARFSNVERAHVLTAATRLINLDEKQVNAVA 120
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
AR E+DLRIG +FTRF T L+ NL LSYG CQFPTLGFVV+RY+ ++
Sbjct: 121 ARMELDLRIGYAFTRFMTNNLRPLG----GPMENLTLSYGSCQFPTLGFVVDRYFRVKNF 176
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
E FW+I +H E +FSW R LFD + +I+YE C+ A +TKV+++ ++
Sbjct: 177 VPEPFWSIKVTHSRERKQVSFSWSRSRLFDRMTTIILYERCLAAKLAKITKVQEKPTRRF 236
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T+EL+K A+R RMS + M +AE LY GFISYPRTETD F G NL +VQ+
Sbjct: 237 KPLPLTTVELQKAATRLLRMSGQQAMTIAEGLYNKGFISYPRTETDRFDKGINLRTLVQK 296
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q WG +AQ L++ G ++ P G HDDKAHPPIHP +++ S + D +LYE
Sbjct: 297 QTPDQRWGEFAQGLVN---GGFQQPREGRHDDKAHPPIHPITYAA-PSVLNHDEGRLYEY 352
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYV 479
VVR FLAC S+ A G+ T +E+ E+FS G ++L +NYLDVY +E W +P +
Sbjct: 353 VVRRFLACCSEDAKGSATEIELQFGEEMFSAHGVIVLERNYLDVYVYEKWNDTAELPKFT 412
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
G+QF PT + G T PP L+EADL++ MD GIGTDATM +HI+K+ DR YA
Sbjct: 413 VGEQFQPTEAMMTEGKTGPPSYLTEADLIALMDANGIGTDATMAEHIQKIQDREYA 468
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL++G+D M +E L KP LR +E MK + G SK +L + Q +
Sbjct: 529 FVPTQLGVALILGFDRMNFETSLGKPFLRKEVELKMKAICEGRLSKDVMLRESIAQYREV 588
Query: 601 FLDAR 605
F+ ++
Sbjct: 589 FMQSQ 593
>gi|402086932|gb|EJT81830.1| DNA topoisomerase III [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 671
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/533 (43%), Positives = 315/533 (59%), Gaps = 15/533 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVT 65
+L VAEKPS++K+VAG LS Q + R Y K Y FN+ G P C + MT V
Sbjct: 3 KILCVAEKPSISKAVAGHLSGGQ-FQTHNTRVTYVKNYSFNFDF-GPPWGSCEVTMTCVL 60
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL ++F ++ W P L+ APV EDKK+I + ++ +A+ + L +W DCD
Sbjct: 61 GHLTGMEFGPEFKDWRYPPPESLFTAPVSTKTAEDKKEIAQNIQRQAQYARALFIWTDCD 120
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E++E R + ++RARFS + I A +NL + + AV AR E+
Sbjct: 121 REGEHIGSEIVEEARKTKPGIQVKRARFSNIERAHILHAAKNLANLDDRQVQAVQARIEL 180
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
D+RIG +FTRF T L+ +LSYG CQFPTLGFVV+RY+ ++ E F
Sbjct: 181 DIRIGFAFTRFLTNNLRTLGGPLAEH----MLSYGSCQFPTLGFVVDRYFRVKNFVPEPF 236
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
WTI + TATF+W RG LFD S VI+YE C+ TA VTKV+++ K+ P PL
Sbjct: 237 WTIKLVVSKDGKTATFNWTRGRLFDRVSVVILYERCLSAKTAKVTKVQEKPTKKWKPLPL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R+ R++ + M VAE LYQ GFISYPRTETD F G NL +VQ+Q
Sbjct: 297 TTVELQKMATRFLRITGQQAMDVAEKLYQKGFISYPRTETDRFDKGMNLRALVQKQTQDG 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF--SSGESRWSQDHYKLYELVVR 423
WG +AQ L+D G ++ P +G HDDKAHPPIHP + S + + +LYELVVR
Sbjct: 357 RWGTFAQGLMD---GGFQQPRNGKHDDKAHPPIHPITYAASGALNDVGPEAGRLYELVVR 413
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQ 482
FLAC S+ A G T + + E F G V+L +NYLDVY +E+W +P G+
Sbjct: 414 RFLACCSEDAKGMATDMHVQYGDETFHAHGVVVLERNYLDVYPYENWTDSAQLPRLTMGE 473
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P + G T P L+EADL++ MD GIGTDATM +HI+ + R YA
Sbjct: 474 HVTPVEAMMTEGKTTAPGHLTEADLIALMDANGIGTDATMAEHIQTIQTRQYA 526
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ G+D M +E L KP LR ME+ MK + G +K VL ++Q +
Sbjct: 588 FIPTQLGVALIEGFDRMNFETSLGKPFLRREMEAKMKAICEGRTTKDVVLNESVRQYRRV 647
Query: 601 F 601
F
Sbjct: 648 F 648
>gi|406867141|gb|EKD20180.1| DNA topoisomerase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 671
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/665 (38%), Positives = 362/665 (54%), Gaps = 63/665 (9%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSV 64
P +L VAEK S++K+VA LS + R++Y K Y F + G+ C +LMT+V
Sbjct: 2 PGKILCVAEKNSISKAVAEHLSGGR-FTTSNTRNQYVKNYSFTFDFGGEWGNCQVLMTAV 60
Query: 65 TGHLMELDFDERYR-KWHSCDPADLYHAPVRKHVPE--DKKDIKKTLEEEARRCQWLVLW 121
+GH+ E F Y W P +L+ APVR V + + + I + + E+AR + L +W
Sbjct: 61 SGHITEARFAPEYEGSWDYVPPQELFTAPVRVQVVDKPESQAIAQNIFEQARGAKALFIW 120
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DCDREGE+I EV N L ++RARFS + + QA +N +D + AV
Sbjct: 121 TDCDREGEHIGGEVRTEAHRGNPRLPVKRARFSNIERAHVIQAARNPIDLDDRQVSAVAT 180
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDD--RNLVLSYGPCQFPTLGFVVERYWEIQA 239
R E+DLRIG FTR+ T+ L+ + T++ V+SYG CQFPTLGFVV+RY+ ++
Sbjct: 181 RIELDLRIGFIFTRWLTVNLRTLGGNMATNEVGEKRVISYGSCQFPTLGFVVDRYFRVRN 240
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
E FW+I +H+ ++ F+W R LFD VII+E C+ TA VT+V ++ K
Sbjct: 241 FVPETFWSIKVTHRRDDMDVVFNWKRSRLFDRAIVVIIFERCIAAKTAKVTRVHEKPTSK 300
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
+ P PL+T+E +K ASR+ RM+S M VAE LYQ GFISYPRTETD F G +L +V+
Sbjct: 301 WRPLPLTTVEFQKNASRFLRMNSSTAMSVAEGLYQKGFISYPRTETDRFDKGIDLRALVE 360
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+Q+ WG YAQ L+ AG ++ P G +DDKAHPPIHP + + + + + ++YE
Sbjct: 361 KQVQDGRWGGYAQGLV---AGGFKQPRQGRNDDKAHPPIHPVTWVAPNT-LNPEEGRVYE 416
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTY 478
+ R FLAC S+ A G T EI E F G V+L +NYLDVY +E+W ++P +
Sbjct: 417 FITRRFLACCSEDAKGQATDAEIEYGDENFGAHGLVVLERNYLDVYPYENWTSTAILPRF 476
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
+ F PT + G T P L+E DLL+ MD GIGTDATM +HIK + DR Y
Sbjct: 477 TLNEIFEPTEAMVTEGNTTAPGYLTEPDLLALMDANGIGTDATMAEHIKMIQDRNYVFTR 536
Query: 539 ANT-----------------------------------------------RFAPTNIGEA 551
F P+ +G A
Sbjct: 537 PKAGGGGNNNQAVPARGGRGGRGGRGDRGGRGGRGGAAPGGRGGGGGCVEEFIPSTLGVA 596
Query: 552 LVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD M +E L KP LR ME MK++ G K++ +VL L+Q K F + ++++
Sbjct: 597 LVDGYDRMDFEPSLSKPFLRKEMELLMKDICDGRKTREEVLRQSLRQYKQVF-EISVERL 655
Query: 610 KLLEA 614
+L+A
Sbjct: 656 AVLKA 660
>gi|123431134|ref|XP_001308043.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121889702|gb|EAX95113.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 644
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/604 (39%), Positives = 341/604 (56%), Gaps = 26/604 (4%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
P +L VAEKPSVA+ A ILS N + ++G+S+YN + F+ + +G+ ++ TSV G
Sbjct: 2 PKQILCVAEKPSVAREAANILS-NGHMETKKGKSKYNNNFVFHRNFQGEDAKVIFTSVAG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H++ DF Y+ W + L+ + V + +D+ L+++AR + LWLD DR
Sbjct: 61 HVLNYDFPPEYKNWETFGNTKLFDCRIISGVTSNMQDVVDNLQQQARSVNLVFLWLDNDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE I+ EV E+C+ VN +RARFS L REI A N N+ A AV RQEID
Sbjct: 121 EGEGISEEVEEICKQVNQRADFKRARFSGLSPREIIHAFNNPTPINRNDAAAVKLRQEID 180
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQ + D +L+ S+G CQFPTLGFVVE + H E FW
Sbjct: 181 LRIGAAFTRFQK------QFKGMLQDADLI-SFGSCQFPTLGFVVEAFLNHIKHVPEYFW 233
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I+ + T W R LF S IY + P A V KV ++++L + P PLS
Sbjct: 234 KIDPIITKDNIKVTLKWDRKRLFCKLSTFAIYAYILDNPMAKVLKVDERQELSFKPLPLS 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE------ 360
TIEL++R S+Y ++S++ +M AE LYQ G ISYPRTETDSFSS +V E
Sbjct: 294 TIELQRRCSKYLKISAQRSMDAAEKLYQNGCISYPRTETDSFSSDFKFFDVVNELTRFNG 353
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
QIG Y+ ++L P +G H D AHPPI+P K + D K+++
Sbjct: 354 QIGQ-----YSNKILQQIVP----PRAGKHSDNAHPPIYPIKVPDKFD--TPDQQKVFDF 402
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
V RHFLAC S+ V T V +I E F G +L N+ ++Y + + G IP +
Sbjct: 403 VCRHFLACCSKDGVSLATRVTFDINSEKFHLKGTRVLEANWHEIYPYIPFKGNKIPQFKI 462
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G+ +PT + + G T PPLL+E DLL M++ GIGTDAT +HI K+L+R Y +++ N
Sbjct: 463 GENILPTKIEFNEGQTTAPPLLTEPDLLKKMNQEGIGTDATYQEHISKILERKYVVQE-N 521
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL GY+ MG++ KP LR+ ME ++++S G ++ V N ++Q +
Sbjct: 522 NFFKPTPLGLALNNGYEGMGFDFMKPKLRAEMEQGLQDISSGRQTYDAVRINFIKQYRDA 581
Query: 601 FLDA 604
+ +A
Sbjct: 582 YENA 585
>gi|255726540|ref|XP_002548196.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134120|gb|EER33675.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 619
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/619 (37%), Positives = 342/619 (55%), Gaps = 24/619 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ +L VAEKPS+AK V+ IL + +++R RS+Y K Y+F ++ + + C + MTSV
Sbjct: 1 MRILCVAEKPSIAKEVSQILGGGR-VKVRNSRSKYIKNYDFTFNFKPEIGNCEVTMTSVV 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ LDF + W C L+ A + + V DK D+ + EARR L++W DCD
Sbjct: 60 GHITGLDFPPEF-GWGCCAAGKLFDAALTEIV--DKADVYDNIANEARRIDKLMIWTDCD 116
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE I FE+ + N L L RA+FS L + QA +N + + AV R
Sbjct: 117 REGEYIGFEIFNAAKKFNQSLGLSQVWRAKFSHLERNHVIQAAKNPIKLDMRAVAAVSCR 176
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EID R+G SFTR T LK I + V SYG CQFPTLGFVV+RY ++ +
Sbjct: 177 MEIDFRVGTSFTRLLTDTLKARGIIG----KGEVASYGTCQFPTLGFVVDRYKRVKRFKP 232
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYP 301
E FW I E FSW+RGH FD ++Y+ C + ++K+ + K +
Sbjct: 233 EPFWYIEVETMKENKKTVFSWVRGHFFDRQYVALLYDKCCKSGEDGIISKLESKRKNNFK 292
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P+PL+T+EL+K +++F+MS++ + AE LY GFISYPRTETD F TN G++Q+Q
Sbjct: 293 PFPLTTVELQKDCAKFFKMSAKQALDAAEKLYNKGFISYPRTETDRFPKETNFQGLLQQQ 352
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
P WG Y +LL + P SG HDD AHPPIHP K+ G + + K+YE V
Sbjct: 353 TQSPGWGSYTTQLLSDG---FVTPRSGSHDDHAHPPIHPIKYGVGSALGNAQEQKIYEYV 409
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH 480
VR F+AC S+ AVG +T V + E F+ +G ++L +NYL+VY + W +P +
Sbjct: 410 VRRFIACCSKDAVGTQTSVTMKWGDEFFTANGLIVLEQNYLEVYPYRKWNSSQELPNFTE 469
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G + + G T P ++E +L++ MD GIGTDAT+ +HI K+L R Y K
Sbjct: 470 GDRVALSKGVQKEGKTSAPNYMTEPELIALMDVNGIGTDATIAEHIDKILRRGYIAKSKK 529
Query: 541 TR---FAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
+ P+ +G L+ G+D M + L KP LR +E + E+S G+++K DVL +
Sbjct: 530 GQKEYIVPSALGMGLIEGFDKMEFRDVSLSKPFLRKALERSLGEISSGSRNKVDVLNETV 589
Query: 595 QQMKACFLDARLKKVKLLE 613
+ F + K L++
Sbjct: 590 SIYREAFAVSSQKMTTLVD 608
>gi|315040584|ref|XP_003169669.1| hypothetical protein MGYG_07839 [Arthroderma gypseum CBS 118893]
gi|311345631|gb|EFR04834.1| hypothetical protein MGYG_07839 [Arthroderma gypseum CBS 118893]
Length = 671
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/652 (38%), Positives = 350/652 (53%), Gaps = 67/652 (10%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-RGQPCHMLMTSVTGH 67
VL VAEKPS+AK++A L G R+ R+ Y K YEF+Y+ + C ++MTSV GH
Sbjct: 5 TVLCVAEKPSIAKAIANHL----GDRVITVRNPYVKNYEFDYTFPQWGHCSVIMTSVLGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ +F+ R++ W SCDP+ L+ A + + K + ++ ARR L +W DCDRE
Sbjct: 61 LLSHEFEPRFKSWTSCDPSALFDAGIEVFIGSKSKPVADNIKRHARRADVLFIWTDCDRE 120
Query: 128 GENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GE+I ++ V N L RA FS + I A D N+ A+AV AR
Sbjct: 121 GEHIGTKIRLVAAQSNQALGRAGGTVRAHFSNIERTHIIHAAHRPADLNEAQANAVAARI 180
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLR+GASFTR T+ L + + ++SYG CQFPTLGFVVERY ++ E
Sbjct: 181 ELDLRVGASFTRHLTLSLCPVLQRGNLSETSQLISYGSCQFPTLGFVVERYLRVRNFIPE 240
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW+I H+ FSW R HLFD +AVI+YE C+ A V KV+ K+ P
Sbjct: 241 PFWSIKLMHQKAGTKVKFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTIPTSKWKPL 300
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K SR+F M S+ +++AE LYQ G+ISYPRTETD F G +L G+ Q+Q
Sbjct: 301 PLTTLELQKCGSRFFGMDSQRVLQLAEKLYQKGWISYPRTETDRFDRGMDLRGLDQKQGA 360
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
W YA L+ G + P +G ++DKAHPPIHP F + + S + +++E VVR
Sbjct: 361 RRRWADYATALVQ---GGFSWPRNGHNNDKAHPPIHPVNFVN-PTTLSHEEQRVHEFVVR 416
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
FLAC S+ A G +T + I E F TSG VIL +NYLDVY + W +P ++ G+
Sbjct: 417 LFLACCSKDAQGLKTEISILYGPETFHTSGLVILERNYLDVYIHDRWSNQELPPFIEGEV 476
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR- 542
F PT L G T PP L+E DLL+ M+ GIGTDATM DHI ++DR Y A R
Sbjct: 477 FEPTEAILGEGKTSPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQPRQ 536
Query: 543 ---------------------------------------------------FAPTNIGEA 551
F PT +G A
Sbjct: 537 ARHGNDEEDSEELPAQTRGGNDRRDRGAVASRRGGWNSGAGRGGAITGVREFIPTTLGVA 596
Query: 552 LVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
LV G+++MG+E L KP LR ME M + G +K+ V++ ++Q + +
Sbjct: 597 LVEGHENMGFETDLMKPFLRKEMELRMSAICNGQTTKSRVVSETIEQYQGVY 648
>gi|388581731|gb|EIM22038.1| prokaryotic type I DNA topoisomerase [Wallemia sebi CBS 633.66]
Length = 797
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/620 (39%), Positives = 338/620 (54%), Gaps = 63/620 (10%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI---RGQPCHMLMTSV 64
I L VAEKPS++KS+ ILS R S++ K Y+FNY + G+ +T+V
Sbjct: 3 IKYLCVAEKPSISKSITQILSSG-SYNSRNTSSKFIKNYDFNYKMTGYNGRQVSFTVTAV 61
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL DF + YRKWHSCDP L+ V + I++ L+ EAR L++W DC
Sbjct: 62 AGHLTASDFGKDYRKWHSCDPLQLFDGRVEVSTAGNMSAIEQNLKNEARSSSHLMIWTDC 121
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I E++ +CR N + + RA+FSA+I +IH A ++ + + AV+AR E
Sbjct: 122 DREGEHIGAEIMSICRKANPRIEVSRAKFSAIIPNQIHNAARHPAELDMKQVRAVEARIE 181
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIGA+FTR TM L + L + GPCQFPTLGFVV++Y I+ SE
Sbjct: 182 LDLRIGAAFTRLMTMNLSKQIAE-------LDVHTGPCQFPTLGFVVDQYQRIKDFISEA 234
Query: 245 FWTINCS--HKSEEG---TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
FW I S H+ ++G F W R LFD + I+YE C P+A VTK+
Sbjct: 235 FWYIFVSIIHRDDDGKDSNVVFHWQRDRLFDPDLSFILYEQCAINPSARVTKI------- 287
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
AE LYQ GF+SYPRTETD + + H ++
Sbjct: 288 -----------------------------AEKLYQKGFLSYPRTETDQYDPSFDFHSLID 318
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+Q WG YA+ L D + P G +DKAHPPIHPT +SG + + ++YE
Sbjct: 319 KQANDGVWGSYARSLTDSG---FDKPREGKKNDKAHPPIHPTAHASG---LTGNDKRVYE 372
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
+ R FLA S+ A G T E+ IAGE+F SG V+L KNYL+V+ ++ W IP +
Sbjct: 373 YITRRFLASCSRDAKGKNTNAEVEIAGEIFKASGSVLLEKNYLNVFPYDKWSSHTIPNFT 432
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--K 537
GQ F P+ L G T PP LL+EADL+S MDK GIGTDAT+ +HI K++DR Y + K
Sbjct: 433 VGQVFTPSVCELREGKTTPPNLLTEADLVSLMDKHGIGTDATIAEHIHKIIDREYVMEHK 492
Query: 538 DANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
NT++ P+ +G ALV GY+ M E + KP LR E M + G K DVL +
Sbjct: 493 QGNTKYLVPSTLGVALVEGYNKMNLEKSVSKPQLRRENEERMNRIGEGLVEKTDVLIESI 552
Query: 595 QQMKACFLDARLKKVKLLEA 614
Q K ++ + + L+E+
Sbjct: 553 DQYKDIYIRSARQFQVLVES 572
>gi|354545471|emb|CCE42199.1| hypothetical protein CPAR2_807480 [Candida parapsilosis]
Length = 615
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/620 (37%), Positives = 366/620 (59%), Gaps = 31/620 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI--RGQPCHMLMTSVT 65
+ +L VAEKPS+AK VA IL + +++R +++Y K Y+F ++ RG C + MTSV
Sbjct: 1 MKILCVAEKPSIAKEVANILGGGR-VQVRTSKNKYIKNYDFKFAFPDRGL-CDVTMTSVV 58
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ LDF +Y +W C L+ A + + K+D+ + +EAR L++W DCD
Sbjct: 59 GHITNLDFPPQY-QWGKCAAERLFTAEIVTKIT--KQDVFDNIAKEARNADKLMIWTDCD 115
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE I E+ + R N ++L R++FS L I +A ++ + + A AV R
Sbjct: 116 REGEFIGKEIFDAARKGNNRILLTDVWRSKFSHLERNHILRAAKSPISLDMKAASAVSCR 175
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+D R+G SFTR +L N ++++ D +++ SYG CQFPTLGFVV+RY ++ +
Sbjct: 176 MELDFRVGTSFTR---LLTDNLKLNNIIDKKDIA-SYGTCQFPTLGFVVDRYKRVKNFKP 231
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E FW I + E TFSW++GH+FD +++YE C++ +TK+ ++ Y P
Sbjct: 232 EPFWYIEPMLRKESKRTTFSWVKGHIFDKLYVLLMYERCLKHEQGEITKLETKQTTNYRP 291
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+K ++YF+MS++ T++ AE LY GF+SYPRTETD + + GI ++Q
Sbjct: 292 LPLTTVELQKDCAKYFKMSAKATLEAAEKLYNRGFLSYPRTETDKYPPTMDFKGIFEKQK 351
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
P WGPY++ LL++ P +G HDD AHP IHP + S +S + + K+YE VV
Sbjct: 352 QDPRWGPYSEGLLNNGH---EQPRNGSHDDHAHPAIHPVNYVSIDSLQTTNEKKVYEYVV 408
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S+ A G T + E F+TSG ++ +NYLD++ ++ W +P + G
Sbjct: 409 RRFLACCSKDAKGMLTSATLKWGDEFFTTSGLMVTERNYLDIFTYKKWESSKSLPGFHEG 468
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ ++ + G T PP L++E +L++ MD GIGTDAT+ +HI K++ R Y K
Sbjct: 469 EKVKISSGLMKEGRTSPPQLMTEPELIALMDANGIGTDATIAEHIDKIMSRKYVTKMKRN 528
Query: 542 R---FAPTNIGEALVMGYDDM---GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+ P+ +G L+ G+D M G L KP LR +E+ ++++ G+K+K +V ++
Sbjct: 529 KIDYIEPSPLGIGLIEGFDKMEFNGISLSKPFLRKALENSLQDICNGSKTKTEV----VE 584
Query: 596 QMKACFLDAR---LKKVKLL 612
+MK + DA L+KV LL
Sbjct: 585 EMKRIYRDAYGICLQKVSLL 604
>gi|350290740|gb|EGZ71954.1| prokaryotic type I DNA topoisomerase [Neurospora tetrasperma FGSC
2509]
Length = 654
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/625 (39%), Positives = 345/625 (55%), Gaps = 62/625 (9%)
Query: 42 YNKIYEFNYSIRGQP---CHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVP 98
Y K Y F G P + MT+V GHL +LDF + ++KW P L+ APV+ P
Sbjct: 27 YTKNYVFTCDF-GPPWGRSTVTMTAVRGHLTQLDFHQEFKKWEYPPPGRLFDAPVQTIYP 85
Query: 99 EDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALID 158
D K I + +E +AR+ L +W DCDREGE+I E+ E R ++ + RARFS +
Sbjct: 86 HDMKTIAQNIENQARQADILYIWTDCDREGEHIGSEIREAARKGKRNIQVYRARFSNIER 145
Query: 159 REIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLS 218
I A + V + A+AV AR E+DLRIG++FTRF T+ L+ ++ D L+LS
Sbjct: 146 AHILSAARRPVALDDKQAEAVAARIELDLRIGSAFTRFLTLSLRPLG-GAMAD---LLLS 201
Query: 219 YGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIY 278
YG CQFPTLGFVV+RY+ ++ E FW+I H+ E F+W R LFD S +++Y
Sbjct: 202 YGSCQFPTLGFVVDRYFRVRNFVPEPFWSIKVMHEKEGVKVNFNWSRNRLFDRLSVLLLY 261
Query: 279 EMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFI 338
E C+ A VT+V++++ K+ P PL+T+EL+K A+R+ RM+ + M VAE LY GFI
Sbjct: 262 ERCLAAKIAKVTEVKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAEKLYNKGFI 321
Query: 339 SYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
SYPRTETD F G NL +VQ+Q WGP+AQ L+D G ++ P G +DDKAHPPI
Sbjct: 322 SYPRTETDRFDKGMNLRALVQKQTQDQRWGPFAQNLVD---GAFQQPRQGRNDDKAHPPI 378
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
HP +++ Q+ +LYE VVR FLAC S+ A GA T VEI E F G ++
Sbjct: 379 HPITYAAPTVLDDQEK-RLYEFVVRRFLACCSEDARGAATDVEITYGEEKFVAHGLIVHQ 437
Query: 459 KNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
+NYLDVY +E+W G +P + G+ F PT + G T P L+EADL++ MD GIG
Sbjct: 438 RNYLDVYPYENWTGTAELPKFTVGETFEPTEAMMTEGKTTAPSYLTEADLIALMDANGIG 497
Query: 518 TDATMHDHIKKLLDRFYA------------------------------------------ 535
TDATM HI+K+ +R Y
Sbjct: 498 TDATMAQHIEKIKERQYVQVVERGGNGGGGNDEDDGAAGGARGGRGGRGGRGRGGGRGGR 557
Query: 536 ----IKDANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADV 589
+ F PT++G AL+ G++ M +E L KP LR ME MK + G ++ +
Sbjct: 558 GGGGVGGGVKEFIPTSLGVALIEGFERMNFETSLGKPFLRKEMELKMKAICEGRLTRDAL 617
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
L + + + +R ++V LL+A
Sbjct: 618 LRESIASYRQVYDQSR-EEVNLLKA 641
>gi|403222791|dbj|BAM40922.1| DNA topoisomerase III [Theileria orientalis strain Shintoku]
Length = 619
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/626 (39%), Positives = 347/626 (55%), Gaps = 71/626 (11%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIRE-GRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
++V NVAEKPSVA ++ ILS G + RE SR N ++ F Y I + C M TSV G
Sbjct: 2 LSVFNVAEKPSVANNITEILS--NGRKNREFTHSRMNPVFSFQYYIESRMCKMYFTSVRG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HLM LDF+ YR W DL+ I K E R+
Sbjct: 60 HLMGLDFEPNYRNWSRTAIEDLFTGKFHTSTHSADDFIGKQRLEGNRK------------ 107
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD--------A 178
E IA LR S +I A+ NL +PN+ A+ A
Sbjct: 108 --EYIA---------------LRTLSRSKCAGSDIEHALNNLKEPNRNLANVSIKSEYGA 150
Query: 179 VDARQEIDLRIG----------ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLG 228
V+ RQEIDLRIG +S TRF T+ KN + +LSYG CQ PTLG
Sbjct: 151 VETRQEIDLRIGKCAQKTVELGSSITRFLTLKYKN-----AIRTQAKILSYGTCQLPTLG 205
Query: 229 FVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFD-YTSAVI---------IY 278
FVVERY +I+ + E +WTIN + E TF W R LFD Y A+I +Y
Sbjct: 206 FVVERYLQIENFQREPYWTINVNVTHESIPVTFLWSRKKLFDEYNRALITMCRLAVLTLY 265
Query: 279 EMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFI 338
E+C++ P + K+ ++E K+PP PL TIE+ K S++ R+SS M++AE LY G+I
Sbjct: 266 EVCLENPRGVIRKIIKKEVKKHPPLPLDTIEMNKDVSKFLRISSHKCMQLAEALYNKGYI 325
Query: 339 SYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
SYPRTET+ F S N+ I++ ++ YA LL+ G +R P G +D+AHPPI
Sbjct: 326 SYPRTETNCFPSSINVKTIIRMLSTVQEFSGYANTLLN---GGFREPIKGRKNDEAHPPI 382
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
HP K S S++H++LYE + R FLAC S+ ++G ++IV ++++GE+F+ G +I
Sbjct: 383 HPVKCLSRYEADSEEHWQLYEYIARRFLACCSKASIGHQSIVILDVSGEMFNLKGLIIHE 442
Query: 459 KNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
+N+L++Y + +W G +IP + QQ +P + L G T PP LLSEA+L+ M++ GIGT
Sbjct: 443 RNWLNIYTYSTWEGKLIPNFHENQQIMPDAILLKDGRTTPPSLLSEANLIDLMNRNGIGT 502
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY---ELWKPNLRSMMESD 575
DATMH+HI+K+ DR Y +KD N RF PTN+G+A+ G+ + Y +L KP LR+ ME D
Sbjct: 503 DATMHEHIQKIQDRHYCVKDQNLRFIPTNLGKAIYHGFKEYNYRNIDLTKPILRAKMEKD 562
Query: 576 MKEVSVGNKSKADVLANCLQQMKACF 601
M ++SVG K K V+ MK+ F
Sbjct: 563 MSDISVGIKDKNQVIVKYSNIMKSIF 588
>gi|126649179|ref|XP_001388262.1| DNA topoisomerase III [Cryptosporidium parvum Iowa II]
gi|126117184|gb|EAZ51284.1| DNA topoisomerase III, putative [Cryptosporidium parvum Iowa II]
Length = 814
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 260/690 (37%), Positives = 374/690 (54%), Gaps = 54/690 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKN-QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK SVAK +A IL Q + +S+ N F Y G C+M++TSV GHL
Sbjct: 47 ILCVAEKNSVAKEIANILCPEFQSPNKLKSKSKTNVALYFPYEFCGDECNMIVTSVRGHL 106
Query: 69 MELDFDERYRKWHSCDPADLY--HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+L F +Y W S +P L PV + D I L ++ +L+LWLDCDR
Sbjct: 107 KQLGFASKYSDWGSVNPVVLLDLSTPVISSILPDCMGIADNLTYFSKISSYLILWLDCDR 166
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENIAFEV+ +C N +L+ RA FSA+ EI+ A++ L PN+ +DAV+AR+EID
Sbjct: 167 EGENIAFEVLSICLNSNKNLITFRAHFSAITKFEINNAMKKLSFPNRALSDAVEARKEID 226
Query: 187 LRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
LR+G+SFTRF T+ F I T LSYG CQFPTLGFVV RY +I E+
Sbjct: 227 LRVGSSFTRFLTLRYSRLFPIPERT------LSYGTCQFPTLGFVVSRYKKIINFREEDE 280
Query: 246 WTINCSHK--------SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
WTI K E F W RG LFD IIYE C++ A + ++ +
Sbjct: 281 WTITLEVKMKIYEGNNKEMSNVIFEWERGKLFDNLFTFIIYETCIENSNARIKEIVNNKI 340
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
LK P PL+T+E+ K AS + S + +AE+LY+ G+ISYPRTET+SFS ++
Sbjct: 341 LKRKPLPLNTVEMTKIASDKLKFSPIKCINIAENLYRKGYISYPRTETNSFSDSIDISKY 400
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
++EQ +G +A LL + P G DD +HPPIHP K + E S + + L
Sbjct: 401 IKEQEKSSIFGSFANELL--YLNSFSVPRKGCKDDGSHPPIHPVKCLNKEQASSNEEWLL 458
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIP 476
YEL+ RHFL+ S+ AV ETIV+++I+GE F T G VI+ +N+L +Y FE ++P
Sbjct: 459 YELITRHFLSSCSEDAVIMETIVKVDISGETFKTKGTVIIEENWLKIYYPFERIKTKILP 518
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
+ G P L L T PP LLSEA+L+ MDK GIGTDATMH+HI+K+ R Y
Sbjct: 519 AFNLGNLAFPYKLFLRKSKTIPPTLLSEAELIDLMDKNGIGTDATMHEHIEKIQVRQYVK 578
Query: 537 KDANTRFAPTNIGEALVMGYD----DMGYELWKPNL----------------------RS 570
K++ + +PT +G AL G++ M ++ K L R
Sbjct: 579 KNSKSLLSPTALGVALYNGFELISRKMESKIDKAKLIGETKSLYLNNIPACNLMHFRIRQ 638
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE-AMGIFFERWSGG---E 626
++E +++++ G S++ V+ MK + + L+ + L+ A+ +F +W
Sbjct: 639 IIERSIEKITSGEYSRSYVVEQIAAFMKNIY-EKMLEFISYLDSALHAYFPKWDASIVMT 697
Query: 627 DQQAAGEVVRQCGICQESNMV--LKKSRDG 654
+ + + + +CG C S V ++KS +G
Sbjct: 698 NGKMVKQNISECGFCGSSINVYEVEKSLNG 727
>gi|343420008|emb|CCD19226.1| DNA topoisomerase III, putative, (fragment) [Trypanosoma vivax
Y486]
Length = 601
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/551 (43%), Positives = 324/551 (58%), Gaps = 23/551 (4%)
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
ML TSV HLM DF + + W S DL+ + KHV + + +K+ LE R+ L
Sbjct: 1 MLCTSVAWHLMNDDFPAQTKNWSSFPLLDLFTVGITKHVKPELEQVKRNLESLGRQFTTL 60
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA 178
LW+DCDREGENI FEV+ V + VN + + RA FSAL R++ AV NL PN+ +DA
Sbjct: 61 ALWMDCDREGENICFEVMSVVQTVNRQIEVCRAHFSALTRRDLFTAVHNLKTPNKALSDA 120
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
+ARQEIDLRIGA F+RFQT+ ++ D VLS+GPCQ PTLGFVV R WE +
Sbjct: 121 AEARQEIDLRIGAVFSRFQTIKFRDMF-----RDMPRVLSFGPCQIPTLGFVVRRSWEQR 175
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEM----CVQEPTATVTKVRQ 294
EE++T+ H G FS RG ++D +A ++ E ++P A V +V Q
Sbjct: 176 EFVPEEYFTLALHH----GQTVFSSCRGSMYDQIAATLVLEAMQESASEKPEAEVMEVVQ 231
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN- 353
+ ++PP PL+T+ L+K A+ + R+SSE M E LYQ G++SYPRTETD FS N
Sbjct: 232 RPNRRHPPVPLATVVLQKLAATHLRISSEQCMMWVESLYQEGYVSYPRTETDFFSLTDNE 291
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF--SSGESRWS 411
L I Q G+ + G Y +L +R P GGHDDKAHPPI+PTK SS + R
Sbjct: 292 LLEIAGLQSGNSEVGQYVSAMLGDRQNRFRRPLRGGHDDKAHPPIYPTKLMPSSNDPR-- 349
Query: 412 QDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG 471
LY L+V HFLACVS AV A T V E F+TSG +L + +L+VY +E W
Sbjct: 350 ---MPLYNLIVGHFLACVSPDAVAATTSVTAVFGEEKFTTSGTAVLERGWLEVYPYERWH 406
Query: 472 GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
IP Y G++F PT + L+ T PPP L+EA+L++ MDK GI TDAT+ HIK +LD
Sbjct: 407 STCIPAYKRGERFTPTVVNLERHRTTPPPNLTEANLIALMDKHGIVTDATIAQHIKTVLD 466
Query: 532 RFYAIKDANTRFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVL 590
R Y +K T PT++G +L Y+ +G L +P LR+ ME M +++ G +K +V+
Sbjct: 467 REY-VKREGTSLVPTSLGNSLASVYEAVGLVSLLQPQLRAQMELAMADIATGKATKEEVV 525
Query: 591 ANCLQQMKACF 601
+ + F
Sbjct: 526 GAAVHLYREIF 536
>gi|363751663|ref|XP_003646048.1| hypothetical protein Ecym_4154 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889683|gb|AET39231.1| hypothetical protein Ecym_4154 [Eremothecium cymbalariae
DBVPG#7215]
Length = 638
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/636 (39%), Positives = 360/636 (56%), Gaps = 35/636 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS---IRGQPCHMLMTSV 64
+ V+ VAEK S+AK+VA LS G R+R R +Y K Y+F Y + Q + MT+V
Sbjct: 1 MRVVCVAEKNSIAKAVAHTLSGG-GTRMRPSRCKYIKNYDFQYKFNWVGQQAVDVTMTAV 59
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL+ DF + Y W+ CDP +L+ A + V ++I + +E R Q+L++W DC
Sbjct: 60 AGHLVHQDFGQEY-SWNMCDPRELFRAEI---VEIPNREIADNIGQECRDAQYLMIWTDC 115
Query: 125 DREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DREGE I +E+ +V N L + RA FS L + +A N V ++ DAV A
Sbjct: 116 DREGEAIGWEIAQVAMRCNPQLDESRIHRAVFSHLGRDHVTRAANNPVRIDKNAVDAVKA 175
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSV-------TDDRNLVLSYGPCQFPTLGFVVERY 234
R EIDLR G +FTR T L+ +++ + ++SYG CQFPTLGFVV+RY
Sbjct: 176 RCEIDLRAGYAFTRLLTGTLQ-CKVEAGPGGAARGNSKKRALISYGTCQFPTLGFVVDRY 234
Query: 235 WEIQAHESEEFW----TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ--EPTAT 288
IQ +EEFW T+ S + G FSW RGHLFD + IYE C + E A
Sbjct: 235 ERIQRFVTEEFWLLQATLEESGSAGGGKVLFSWDRGHLFDRLCVLGIYETCSEHAENRAK 294
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF 348
V V +E KY P PL+T+EL+K S++ RMS++ ++ AE LYQ GFISYPRTETD F
Sbjct: 295 VVHVSSKETSKYRPLPLTTVELQKNCSKFLRMSAKQSLDAAEKLYQKGFISYPRTETDVF 354
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLDH----AAGLWRNPGSGGHDDKAHPPIHPTKFS 404
S +L +VQ+Q H WG YA LL + + ++ P +G HDD+AHPPIHP
Sbjct: 355 SKQMDLRALVQQQTAHQQWGAYASGLLSNENSSSGNGFQWPRAGNHDDQAHPPIHPVTCV 414
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV 464
+ D ++YE VVRHFLAC SQ G + V++ E FS +G +LA+N+L V
Sbjct: 415 QPGGDLNFDEKRVYEYVVRHFLACCSQDGKGRSSKVQLQWHTESFSATGLQVLAENFLQV 474
Query: 465 YRFESW-GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
Y ++ W +P G + + + + SG T PP ++E++L+ MD GIGTDAT+
Sbjct: 475 YTYQKWTSSAQLPILGLGDDILLSKVEMKSGKTLPPKYMTESELIMLMDANGIGTDATIA 534
Query: 524 DHIKKLLDRFYAIKDANTR---FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKE 578
+HI+K+ +R Y D + F PT +G +LV G++D+G E KP LR ME D+K
Sbjct: 535 EHIEKIQERQYIKADGTAKSKVFKPTVLGRSLVHGFEDIGLEESFAKPFLRRDMEVDLKS 594
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
+ G K ++ VL + + + + ++ KL++A
Sbjct: 595 ICEGKKDRSSVLKHIVGMYTDYYEQTQRQRDKLIQA 630
>gi|425769433|gb|EKV07926.1| DNA topoisomerase [Penicillium digitatum Pd1]
gi|425771095|gb|EKV09549.1| DNA topoisomerase [Penicillium digitatum PHI26]
Length = 571
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/567 (41%), Positives = 325/567 (57%), Gaps = 23/567 (4%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV GHL LDFD +Y+ W SC P L+ APV++ V +DK I + +A+ + L +
Sbjct: 1 MTSVVGHLTGLDFDRQYKGWMSCPPGSLFEAPVQEFVDKDKLPIADNIRNQAKYSKALFI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
W DCDREGE+I EV A N + ++RA+FS + +A V+ +++ A AV
Sbjct: 61 WTDCDREGEHIGSEVRSQALAGNSRIEVKRAKFSNTESAHVRRAALAPVNLDEYQASAVA 120
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
AR E+DLRIGA+FTR QT+ L+ V + V+SYG CQFPTLGFVV+RY +Q
Sbjct: 121 ARIELDLRIGAAFTRLQTLQLQTV----VAALKEKVISYGSCQFPTLGFVVDRYLRVQNF 176
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+ E FW I E F W R HLFD ++ E C+ A VTKV Q+ K+
Sbjct: 177 KPETFWGIKVILSREGKKVNFLWKRVHLFDRAVVTMMLERCLVAKQAKVTKVSQKPTSKW 236
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T++L+ SR+ R+ S+ MKVAE LY GFISYPRTETD F +L ++++
Sbjct: 237 RPLPLTTVDLQMMGSRFLRLDSQTIMKVAEALYTKGFISYPRTETDQFDKAIDLKKLIEK 296
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q WG YA+ L+D G +R P G H+DKAHPPIHP + S ++ + + K+YE
Sbjct: 297 QYPDSSWGQYARELVD---GKFRTPRFGRHNDKAHPPIHPVSWVS-PNQLNANEKKVYEF 352
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYV 479
VVR FLAC S A G T +EI E F T+G ++L +NYLDVY ++ W IP +
Sbjct: 353 VVRRFLACCSDDAKGQGTEIEIQYGEESFHTNGLIVLERNYLDVYVYDKWESSQQIPNFE 412
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--- 536
G+ F PT + G T P L+E +L+ MD GIGTDATM +HI K+ +R Y
Sbjct: 413 RGELFEPTEANIFEGKTTAPNYLTEPELIGLMDANGIGTDATMAEHIAKIKEREYVAINQ 472
Query: 537 ----KDANTRFAPTNIGEALVMGYDDM------GYELWKPNLRSMMESDMKEVSVGNKSK 586
+ A F PT +G ALV GYD++ L KP LR ME M E+ G K++
Sbjct: 473 RGSGRSAVQEFIPTRLGIALVEGYDNVVEGLPNSVSLSKPFLRKEMELRMIEICSGTKTR 532
Query: 587 ADVLANCLQQMKACFLDARLKKVKLLE 613
+V+ L + F+ + +++ +L+
Sbjct: 533 QEVVQQSLDMYREVFIHTQ-RRINMLK 558
>gi|397641070|gb|EJK74455.1| hypothetical protein THAOC_03864, partial [Thalassiosira oceanica]
Length = 948
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 282/748 (37%), Positives = 393/748 (52%), Gaps = 109/748 (14%)
Query: 1 MAGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSR-YNKIYEFNYSIRGQPC-- 57
MAG PI VLNVAEKPSVA+++A + + G + R + +I+E + ++R PC
Sbjct: 1 MAG---PI-VLNVAEKPSVARALADVFRSSPGAQQRNNHANGPTQIFECD-NVRF-PCLD 54
Query: 58 -----------------HMLMTSVTGHL--------------------------MELDFD 74
M+ T+V GHL + DF
Sbjct: 55 QQGSGRLASNNARVEGHTMITTAVRGHLASQVRVLVYELTAVTCCCKLIACSSPLRQDFP 114
Query: 75 ERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFE 134
Y W +P L+ AP+ ED + +++ L + ARR L+LWLDCDREGE I+ E
Sbjct: 115 SSY-GWRRVNPVALFDAPINTTYKEDMQPLERMLRDLARRASALILWLDCDREGEAISDE 173
Query: 135 VIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
V VC N L + RA+FS ++ EI +A++ L N+ AV+AR E DLR
Sbjct: 174 VRTVCLRGNARLGSQNRIFRAKFSTVMPGEIQRALRTLGRVNENLVKAVEARSEHDLRYW 233
Query: 191 ASFTRFQTMLLKNFHID-----------------SVTDDRNLVLSYGPCQFPTLGFVVER 233
R + N + ++T D+ V+SYGPCQFPTLGFVVER
Sbjct: 234 LCRGRSSVYAMVNVSVSKQVRWVCRLNLNMTSLHALTLDQ--VISYGPCQFPTLGFVVER 291
Query: 234 YWEIQAHESEEFWTI----------------------NCSHKSEEGTA-TFSWMRGHLFD 270
+ IQ E+FW + N + ++G A + +W R L+D
Sbjct: 292 WARIQTFVKEDFWFLEMTIRLNADGSVVNNIPAQGVNNVYNNQQQGRAISLTWKRVRLYD 351
Query: 271 YTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAE 330
T + IY+ C++ A VT V + K K+ P PL+T+EL+KRAS+Y R+ SE M+ AE
Sbjct: 352 RTMTLAIYDACLEAGEAVVTDVSGRPKNKWRPIPLATVELQKRASKYLRIGSEVLMQKAE 411
Query: 331 DLYQAGFISYPRTETDSFSSGTNLHGIVQE-QIGHPDWGPYAQRLLDHAAGLWRNPGSGG 389
LY G+ISYPRTET+ F N H ++Q + + G YAQ LL + ++NP +G
Sbjct: 412 SLYNNGYISYPRTETERFRPEFNHHDLIQSFHAVNGELGNYAQLLLSNNN--FQNPRAGP 469
Query: 390 HDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVF 449
+DD AHPPI P K + E +Y LVV+H+LAC S+ AVG ET + + IA E F
Sbjct: 470 NDDNAHPPITPAKAVNPEEIADPIERNIYSLVVKHYLACCSRDAVGRETELTLKIASEEF 529
Query: 450 STSGRVILAKNYLDVYR-FESW--GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEAD 506
S G +IL +N+L++Y +E W G V+P G + PT+L + G T PP L+SE +
Sbjct: 530 SAKGLMILERNWLEIYHPWEKWSTGQGVLPKARVGTRITPTSLMMRDGATAPPNLISEVE 589
Query: 507 LLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKP 566
L+S MDK GIGTDAT+ HI +LDR Y +KDA+ RF P +G ALV GY+ MG++L KP
Sbjct: 590 LISAMDKNGIGTDATIAQHITTILDRGYCVKDASQRFNPNPLGIALVEGYNSMGHQLNKP 649
Query: 567 NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGE 626
+LR ME++ ++ G K+K VL + + QM CF +A K KL EAM F R G
Sbjct: 650 DLRRSMEAECNAIADGRKTKEAVLGSVVLQMLQCFNEANAKAAKLDEAMERHFGRLGTGN 709
Query: 627 DQQAA--GEVVRQCGICQESNMVLKKSR 652
Q + G R CG C M LK+ R
Sbjct: 710 SQYSVLQGNFSR-CGNC-NGMMTLKQVR 735
>gi|261191759|ref|XP_002622287.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
gi|239589603|gb|EEQ72246.1| DNA topoisomerase III [Ajellomyces dermatitidis SLH14081]
Length = 649
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/626 (38%), Positives = 338/626 (53%), Gaps = 65/626 (10%)
Query: 42 YNKIYEFNYSIRG-QPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPED 100
Y K YEF+Y+ R C + MTSV GHL+ +F+ RY+ W SCDP+ L+ A + V +
Sbjct: 12 YVKNYEFDYTFRQWGHCSVTMTSVLGHLLSHEFEPRYKSWTSCDPSALFDARIEVFVGSN 71
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV----LRRARFSAL 156
+ I ++ ARR L +W DCDREGE+I E+ V N L RA FS +
Sbjct: 72 SEPIADNIKRHARRAGVLFIWTDCDREGEHIGTEIRSVAAQSNQALGRAGGTVRAHFSNI 131
Query: 157 IDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLV 216
I A D ++ A+AV +R E+DLR+GASFTR T+ L+ + + +
Sbjct: 132 ERTHIIHAAHRPADLDEAQANAVASRIELDLRVGASFTRHLTLSLRPVLQRGNLSEASQL 191
Query: 217 LSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVI 276
+SYG CQFPTLGF+VERYW ++ E FW+I H+ FSW R HLFD +AVI
Sbjct: 192 ISYGSCQFPTLGFIVERYWRVRNFIPEPFWSIKLMHRKAGTRVNFSWARKHLFDRRTAVI 251
Query: 277 IYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG 336
+YE C+ A V KV+ K+ P PL+T+EL+K SR+F M S+ +++AE LYQ G
Sbjct: 252 LYERCLTSQNAQVQKVKTTPTSKWKPLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQKG 311
Query: 337 FISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHP 396
+ISYPRTETD F G +L G+VQ+Q W YA L++ G + P +G +DDKAHP
Sbjct: 312 WISYPRTETDQFDRGMDLRGLVQKQAQGGRWADYATALVE---GGFSWPRNGHNDDKAHP 368
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
PIHP F + + S + +++E VVR FLAC S+ A G++T + I E F SG VI
Sbjct: 369 PIHPVNFVN-PTTLSHEEQRVHEFVVRRFLACCSKDAQGSKTDIIILYGPETFHASGLVI 427
Query: 457 LAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
L +NYLDVY ++ W +P ++ G+ F PT L G T PP L+E DLL+ M+ GI
Sbjct: 428 LERNYLDVYVYDRWSNQELPPFIKGEVFEPTEAILSEGKTSPPGYLTEPDLLALMNANGI 487
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTR---------------------------------- 542
GTDATM DHI ++DR Y A R
Sbjct: 488 GTDATMADHIVTIIDRQYVEARAQPRQARHGNDEEESEELPAQARGGNGRRGRTAVAPRR 547
Query: 543 ------------------FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVG 582
F PT +G ALV G+++MG+E L KP LR ME M + G
Sbjct: 548 GGRNSGAGRGGAITGVREFIPTTLGVALVEGHENMGFETNLMKPFLRKEMELKMNAICNG 607
Query: 583 NKSKADVLANCLQQMKACFLDARLKK 608
+K V+ ++Q + + AR+++
Sbjct: 608 QTTKTRVVNETIEQYRGVY--ARMQQ 631
>gi|449304688|gb|EMD00695.1| hypothetical protein BAUCODRAFT_60941 [Baudoinia compniacensis UAMH
10762]
Length = 675
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/534 (43%), Positives = 322/534 (60%), Gaps = 14/534 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTGH 67
VL VAEKPS+A++VA LS Q ++Y K YEF+ ++ C + MTSV GH
Sbjct: 4 KVLCVAEKPSIARAVANHLSGGQINSRNVQGNQYVKNYEFHCNLAAWGACSVTMTSVLGH 63
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ DF++RYRKW+SC+P+ L+ A + +V +DKK + +E +AR Q+L +W DCDRE
Sbjct: 64 LLSHDFEDRYRKWNSCEPSALFEARIETYVEDDKKAVAGNIERQARYAQYLYIWTDCDRE 123
Query: 128 GENIAFEVIEVCRAVNCHLVLR------RARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
GE+I E+ +V A + + LR RARFS + I A N V ++ A+AV +
Sbjct: 124 GEHIGTEIRQV--ATHGNQALRQPGKTVRARFSNVERAHILNAASNPVALDEAQANAVMS 181
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E+DLRIGA+FTR T+ ++ + V+SYG CQFPTLGFVVERY ++
Sbjct: 182 RIELDLRIGATFTRNLTLSIQPMLQGRFGAEERQVISYGSCQFPTLGFVVERYLRVRNFV 241
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E FWTI H+ F W R HLFD + ++++E C+ A VT V+ + K+
Sbjct: 242 PETFWTIKVMHEKHGIKVNFRWARDHLFDRVAVIVLFERCLTARVARVTGVQTKPASKWK 301
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T+EL+K SR+ RM S M+VAE LYQ G+ISYPRTETD F G +L +VQ+Q
Sbjct: 302 PLPLTTVELQKCGSRFLRMDSHRVMQVAEGLYQKGWISYPRTETDQFDRGMDLRALVQKQ 361
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
W +AQ L++ G + P G ++DKAHPPIHP F ++ S + +++E V
Sbjct: 362 TQGGAWAQFAQALVN---GGFSQPRQGRNNDKAHPPIHPVNFVL-PTQLSAEEQRVHEFV 417
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH 480
VR FLAC SQ A G++T + I E F T G +L +NYLDVY ++ W +P +
Sbjct: 418 VRRFLACCSQDARGSKTEISILYGPETFHTGGLAVLERNYLDVYPYDRWTSSQELPEFRE 477
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
G+ F PT + G T PP L+E +L++ MD GIGTDATM +HIKK+ DR Y
Sbjct: 478 GETFEPTEAMMRDGQTSPPGYLTEPELIALMDVNGIGTDATMAEHIKKIKDRQY 531
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G ALV GY++MG+E L KP LR ME MK + K+KADV+ ++Q +
Sbjct: 592 FIPTTLGVALVEGYENMGFETSLTKPFLRKEMELKMKAICESRKTKADVIHETIEQYRDV 651
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGED 627
++ +L+ L+A+ ++ GE+
Sbjct: 652 YVRTQLR----LDALRAAVRKYVFGEN 674
>gi|171686712|ref|XP_001908297.1| hypothetical protein [Podospora anserina S mat+]
gi|170943317|emb|CAP68970.1| unnamed protein product [Podospora anserina S mat+]
Length = 751
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/530 (42%), Positives = 314/530 (59%), Gaps = 11/530 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEF--NYSIRGQPCHMLMTSVTGH 67
VL VAEKPS+AK+VA LS Q + +Y K Y F N+ ++ MT+V GH
Sbjct: 89 VLCVAEKPSIAKAVAQHLSGGQ-YQTANTSDKYTKNYSFTFNFGPGLGDSNVTMTAVRGH 147
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L +F Y+ W P L+ AP+ D K I + +E AR L++W DCDRE
Sbjct: 148 LTTAEFPPTYKSWSHPPPDSLFDAPITTVTTPDCKAIARNIETLARSSSVLIIWTDCDRE 207
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ + N ++ +RRARFS + I A + LV +Q DAV AR E+DL
Sbjct: 208 GEHIGSEIRDAALKGNRNIQVRRARFSNVERGHILSAARRLVALDQRQVDAVAARIELDL 267
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIG +FTRF T L+ L++SYG CQFPTLGFVV+RY+ ++ E FW+
Sbjct: 268 RIGFAFTRFLTNNLRGLG----GPMGELMISYGSCQFPTLGFVVDRYFRVKNFVPEAFWS 323
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H+ E +F W R LFD + I+YE C++ A V KV+++ K+ P PL+T
Sbjct: 324 IKLVHEREGMKVSFGWARNRLFDRAAVTILYERCLRAREAVVKKVQEKPTKKWKPLPLTT 383
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL+K A+R+ RM+ + M VAE LY GFISYPRTETD F G NL G+V++Q W
Sbjct: 384 VELQKMATRFLRMTGQQAMTVAEKLYNKGFISYPRTETDRFDKGMNLRGLVEKQFPDGRW 443
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G +A+ L++ G + P G +DDKAHPPIHP + + + K+YELVVR FLA
Sbjct: 444 GAFARELIE--GGRFNQPRQGKNDDKAHPPIHPIT-CAAPTVLDEQERKVYELVVRRFLA 500
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQFIP 486
C S A G T VE+ E+F+ G ++L +NYLDVY +E+W G ++P + G++F P
Sbjct: 501 CCSDDAKGMATDVEVGYGEEMFAAHGVIVLERNYLDVYPYENWTGTAMLPKFEVGERFEP 560
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
T + G T PP L+EADL++ MD GIGTDATM +HI+K+ +R Y +
Sbjct: 561 TEAMMTEGKTSPPSYLTEADLIALMDANGIGTDATMAEHIEKIQERQYVV 610
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 538 DANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
D F PT++G AL+MG+D M +E L KP LR E MK + G +K + L + +
Sbjct: 667 DGVKEFIPTSLGVALIMGFDRMSFEISLGKPFLRKETELMMKAICEGRSTKQEFLQSNIH 726
Query: 596 QMKACFLDARLKKVKLLEAMGIF 618
Q + + + ++ L+A+ +F
Sbjct: 727 QYRTVYHQSS-AELNTLKAVSLF 748
>gi|406606993|emb|CCH41611.1| DNA topoisomerase III [Wickerhamomyces ciferrii]
Length = 623
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/605 (38%), Positives = 355/605 (58%), Gaps = 20/605 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-RGQPCHMLMTSVTG 66
+ VL VAEK S+AK VA IL + ++I +Y K Y+F ++ + C + MTSV G
Sbjct: 1 MKVLCVAEKNSIAKEVAKILGGGR-IQISNSPYKYVKNYQFTFNFPQLGNCDVTMTSVAG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL +DF + Y KW C P L+ AP+ + +D+K I + +E R Q L++W DCDR
Sbjct: 60 HLSGMDFPDAY-KWGRCSPGKLFEAPIVITMSDDQKKIAQNIERLGRTAQKLMIWTDCDR 118
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I E+++V R N ++ + RA+FS L + +A + + +Q +AV+ R
Sbjct: 119 EGEYIGKEILDVARKGNPNITIDNTLRAQFSHLERSHVLKAAREPIKLDQNAINAVETRM 178
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLR GASFTRF + + + ++ D V+SYG CQFPT+GFVV+R+ I+ E
Sbjct: 179 ELDLRTGASFTRFLCDVFQKYKNANLVD----VVSYGSCQFPTVGFVVDRFKRIKNFVPE 234
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
EFW ++ S + + T F+W + LFD +AV++Y+ C++ T+T ++ K+ P
Sbjct: 235 EFWYLDISVRKGKIT-RFTWKKNRLFDRLAAVVLYQKCMENEKGTITNIKSSPSTKWKPL 293
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K S YF+MS++ +++VAE LYQ GF+SYPRTET+ + +L ++ +Q
Sbjct: 294 PLTTVELQKGCSMYFKMSAKESLEVAEKLYQKGFLSYPRTETNVYPKTMDLKALIDKQRP 353
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES-RWSQDHYKLYELVV 422
WG YA LLD L+ P G +D+AHPPIHP + + S + K+YE VV
Sbjct: 354 DQVWGEYATGLLD--GDLFDTPRQGKKNDEAHPPIHPVNYLNIHSPDATATEKKVYEFVV 411
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHG 481
RHFLA S+ A GA T V++ E FS SG +L NYLD+Y+++SW +P +
Sbjct: 412 RHFLATCSKNAKGASTNVDLTWGTEKFSASGLQVLELNYLDIYKYQSWKSSAELPEFTMN 471
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+Q + L SG T PP ++E +L++ MD GIGTDAT+ DHI+K+ +R Y IK
Sbjct: 472 EQVKINSAELKSGKTSPPQHITETELIALMDANGIGTDATIADHIEKVCNRQYIIKKTER 531
Query: 542 R---FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
+ P+ +G ALV G++++ L KP LR ME ++K + G K K DV ++
Sbjct: 532 QKKFLVPSTLGMALVDGFEELNLRNSLTKPFLRKNMEEELKAICDGVKRKNDVSHEMVEL 591
Query: 597 MKACF 601
+ F
Sbjct: 592 YRESF 596
>gi|344229989|gb|EGV61874.1| hypothetical protein CANTEDRAFT_108430 [Candida tenuis ATCC 10573]
Length = 616
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/606 (38%), Positives = 337/606 (55%), Gaps = 21/606 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-CHMLMTSVTG 66
+ VL VAEKPS+AK V +LS + R R+ RS+YN ++F ++ G C + MTSVTG
Sbjct: 1 MKVLCVAEKPSIAKEVTSVLSGGRSTR-RDSRSKYNANFDFKFTFPGHGLCDVTMTSVTG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF Y W P L APV+ + K I + + EAR +L++W DCDR
Sbjct: 60 HITSMDFPAEY-AWGRVPPGRLLDAPVKIQPDKSKLAIHQNIANEARSANYLMIWTDCDR 118
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I +E++E + N L L R FS L I A +N + N +AV RQ
Sbjct: 119 EGEAIGYEILEAAKKGNTRLSLSSVWRPHFSHLEKNHILSAARNPQNLNMKTVEAVHCRQ 178
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLR+GASFTR T +L+ + D+ ++SYG CQFPTLGFVV+RY ++ E
Sbjct: 179 EVDLRVGASFTRLLTDILRR---SKLVDE---IVSYGTCQFPTLGFVVDRYKRVKNFVPE 232
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+FW I+ S + T +FSW + H FD V++YE C++ T+ V ++ + P+
Sbjct: 233 KFWYISTSVEKSNQTVSFSWAKTHFFDRLFVVMLYEECMKSTHGTIKGVTRKPTSNFKPF 292
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+ L+K + YF+MS++ + AE LYQ+G+ISYPRTETD F +L I+Q
Sbjct: 293 PLTTVSLQKDCATYFKMSAKEALDAAEKLYQSGWISYPRTETDMFPPEMDLRSIIQTHTQ 352
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG YA L+ G + P G ++DK+HPPIHP K+ + E+ + K+YE VVR
Sbjct: 353 DSRWGHYATSLMT-VDGKYGIPRKGRNNDKSHPPIHPVKYVNLETITNDKQRKVYEYVVR 411
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQ 482
FLAC S A G +T+ E+ E F SG + KNYLDVY + +W +P +V G+
Sbjct: 412 RFLACCSTDAKGFQTVAELQWGNETFRASGLEVTEKNYLDVYTYRTWSSTEQLPPFVAGE 471
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + G T PP ++E +L++ MD GIGTDAT+ +HI K+ R Y K +
Sbjct: 472 RVNLKSAEVKEGKTSPPNHMTETELIALMDANGIGTDATIAEHIHKIEQRSYITKKKTGK 531
Query: 543 ---FAPTNIGEALVMGYDDMGY----ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
PT +G L+ + + + L KP LR +ES +KE+ G +K L +
Sbjct: 532 SHIILPTELGMGLIEAFSSISFANNISLSKPFLRKRLESLLKEIEEGRATKEFSLRETIS 591
Query: 596 QMKACF 601
K F
Sbjct: 592 LYKNAF 597
>gi|255716548|ref|XP_002554555.1| KLTH0F08118p [Lachancea thermotolerans]
gi|238935938|emb|CAR24118.1| KLTH0F08118p [Lachancea thermotolerans CBS 6340]
Length = 627
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 245/619 (39%), Positives = 362/619 (58%), Gaps = 17/619 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHML-MTSVTGHL 68
V+ VAEK S+AK+VAGILS + R R+ ++Y K Y+F +S + MTSV GHL
Sbjct: 4 VVCVAEKNSIAKAVAGILSGGRCSR-RDSPNKYIKNYDFTFSFGFSGSSSVTMTSVAGHL 62
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LD D+ + W C ++ AP+ +D++ I +++E R +L++W DCDREG
Sbjct: 63 TGLDLDQAH-GWGKCPIPQVFDAPIVDTRTKDQQKIADNIKKECRNADYLMIWTDCDREG 121
Query: 129 ENIAFEVIEVCRAVNCHLV--LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
E I +E+++ N L + RA FS L I A +N +Q DAV R E+D
Sbjct: 122 EYIGWEIVQTAIQANQSLQANVYRAVFSHLESGHIMHAARNPKRLDQRAVDAVRTRMEVD 181
Query: 187 LRIGASFTRFQTMLL-KNFHIDSVT-DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
LR G +FTRF T LL DS + +D+ ++SYG CQFPTLGFVV+R+ I+ E+
Sbjct: 182 LRSGVAFTRFLTELLGSTVGRDSGSKNDQRPIISYGTCQFPTLGFVVDRFERIRKFVPEK 241
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEP--TATVTKVRQQEKLKYPP 302
FW I S ++ F W RGHLFD + +IYE+C++ A V ++ + K+ P
Sbjct: 242 FWFIQISIPNDSEKTVFQWERGHLFDRLAVAVIYELCLEASGNIAKVADLKSKPTTKWRP 301
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+K SR+ +MS++ ++ AE LYQ G+ISYPRTETD F +L +VQ+Q
Sbjct: 302 LPLTTVELQKNCSRFLKMSAKTSLDAAEKLYQKGYISYPRTETDIFPPNMDLQALVQQQT 361
Query: 363 GHPDWGPYAQRLLD-HAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
WG YAQ LL+ + ++ P +G +DDKAHPPIHP S GE +++ K+YE V
Sbjct: 362 NDRRWGEYAQNLLNGNGPNCFKWPRAGKNDDKAHPPIHPI-VSCGEGLDNENEKKVYEYV 420
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVH 480
RHFLAC S+ + G T + ++ E F+ +G V+L +N+LDVY + W +P
Sbjct: 421 TRHFLACCSEDSKGHSTTMVLHWGPEAFTANGIVVLERNFLDVYLWMKWETTKQLPNLNV 480
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--- 537
GQ+ T + G T PP ++E++L+ MD GIGTDAT+ +HI+K+ R Y K
Sbjct: 481 GQEVELLTYLMKDGQTSPPNQMTESELILLMDANGIGTDATIAEHIEKIQQRDYIKKKKV 540
Query: 538 DANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+ T PT +G +LV G++ +G E KP LR ME D+K + GNK++ADV+ + +
Sbjct: 541 NKQTYLIPTTLGISLVHGFEAIGLEDSFAKPFLRREMELDLKLICSGNKNRADVVKDLIN 600
Query: 596 QMKACFLDARLKKVKLLEA 614
+ + + K+VKL+E
Sbjct: 601 KYQNYYGLTSTKQVKLIET 619
>gi|241594082|ref|XP_002404244.1| DNA topoisomerase III, putative [Ixodes scapularis]
gi|215502316|gb|EEC11810.1| DNA topoisomerase III, putative [Ixodes scapularis]
Length = 670
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 250/662 (37%), Positives = 352/662 (53%), Gaps = 75/662 (11%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEK AK+++ I+S+ R R+G S YNKIYEF+Y++ C M+MTSV+GH
Sbjct: 47 MRVLNVAEKNDAAKNLSEIMSRG-SYRRRDGLSVYNKIYEFDYNLFNTNCKMVMTSVSGH 105
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHV-PEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
L+ L+F YRKWHSC P +L+HAPV ++ + IK+TLE+E R C LV+W DCDR
Sbjct: 106 LLTLEFVSDYRKWHSCSPVELFHAPVIMSCGDKNYEKIKETLEKEIRYCDALVIWTDCDR 165
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI F++I VCR V + + RARFS + + + +A QNL DP+ AV+ R+E+D
Sbjct: 166 EGENIGFQIISVCRKVKPRVRVYRARFSEITPQAVARACQNLADPDPKLNAAVEVRRELD 225
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR QT+ LK + D ++SYG CQFPTLGFVVERY +I E FW
Sbjct: 226 LRIGAAFTRLQTLRLKREFPQQLHDR---LVSYGSCQFPTLGFVVERYRQILNFVPEPFW 282
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I+ +HK ++ A FSW R LFDY ++Y+ C+Q + V +++ + K K+ P P+
Sbjct: 283 KIHLTHKKDDILADFSWKRHRLFDYQLCFLLYQRCLQGEVSVVVEMKCKPKSKWRPQPMD 342
Query: 307 TIELEKRASRYFRMSS-EHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+ + A Y SS + +V + + + RT +L V
Sbjct: 343 TV-VSGEAPFYLGASSLSNCWRVLRNPGTSDQLPGSRTTCGMIRRLRHLTRNVLTSALSS 401
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+A+RLL A GL P G D+AHPPIHP K +
Sbjct: 402 APADFARRLL--ADGL--TPRQGTKSDQAHPPIHPIKHA--------------------- 436
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
A F +G +I A+NYLDVY ++ W IP Y + F+
Sbjct: 437 -------------------ASLEFVATGLIIFARNYLDVYPYDKWSAKEIPNYEMNETFV 477
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
P L L G T PPPLL EADL++ M+K GIGTDAT DHI+ + +R Y + P
Sbjct: 478 PDQLKLVDGETSPPPLLKEADLIALMEKHGIGTDATHADHIETVKNRLYVALTGDGYLVP 537
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+G LV GYD MG E+ KP LR+ +E+D+K++ G K+ DVL ++ + F ++
Sbjct: 538 GELGMGLVEGYDSMGLEMSKPRLRAELEADLKKICDGTKNPKDVLRRQIELYEDVFSNSE 597
Query: 606 LKKVKLLEAMGIFF--------------------ERWSGGEDQQAAGEVV----RQCGIC 641
+ KL E++ + R GG D AG R+CG+C
Sbjct: 598 RQIKKLGESLKKYLGTGQRLAPPANGPRSNRTDQSRPGGGGDSTNAGASNRRGGRRCGLC 657
Query: 642 QE 643
+
Sbjct: 658 NQ 659
>gi|241953321|ref|XP_002419382.1| DNA topoisomerase III, putative [Candida dubliniensis CD36]
gi|223642722|emb|CAX42976.1| DNA topoisomerase III, putative [Candida dubliniensis CD36]
Length = 630
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/610 (38%), Positives = 350/610 (57%), Gaps = 28/610 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ +L VAEKPS+AK+VA IL + +R+ ++ K Y+F ++ + + PC + MTSV
Sbjct: 1 MKILCVAEKPSIAKAVANILGGGR-TSLRDSSEKFIKNYDFTFTFKPEDGPCQVTMTSVV 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ L+F+ + W C P L+ A + + KK + + + +EAR L++W DCD
Sbjct: 60 GHITNLEFESAF-AWGKCVPGRLFDADILTVIT--KKAVHENIAKEARNADKLMIWTDCD 116
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE I FE++ + N +L L RA+FS L I +A +N V+ + AV R
Sbjct: 117 REGEYIGFEIMNAAKKYNRNLELNNIWRAKFSHLERNHIIRAAKNPVNLDMSAVAAVSCR 176
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+D R+G SFTR T L+ I D V SYG CQFPTLGFVV+RY ++
Sbjct: 177 MEVDFRVGTSFTRLLTDQLRQKGII----DGTQVASYGTCQFPTLGFVVDRYKRVKNFIP 232
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYP 301
E FW I + E F+W+RGH FD V++YE C + ++K+ + K +
Sbjct: 233 EPFWHIEVETRKENKKTVFNWVRGHFFDKLYVVMLYEQCCKSGEYGIISKIESKRKPNFR 292
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P+PL+T+EL+K +R+F+MS++ ++ AE LY GF+SYPRTETD F+ T+ +++
Sbjct: 293 PFPLTTVELQKDCARFFKMSAKAALEAAEKLYNQGFLSYPRTETDRFAKETDFRSLLEVH 352
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
WG Y LL ++ P SG HDDKAHPPIHP K+ S ++ S + K+YE V
Sbjct: 353 KQDSRWGSYTTELLSQG---YQVPRSGSHDDKAHPPIHPIKYVSLDTLKSINEKKVYEYV 409
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH 480
VR F+AC S+ AVG +T+ + E F+ +G ++L KNYLDVY ++ W +P +
Sbjct: 410 VRRFIACCSKDAVGMQTVATLKWGDEFFTANGLMVLEKNYLDVYIYKKWESSKQLPKFTE 469
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD-- 538
G++ + L G T PP ++E +L++ MD GIGTDAT+ +HI K+ +R Y K
Sbjct: 470 GERIKLASGVLKEGKTSPPNHMTEPELIALMDANGIGTDATIAEHIHKIENRGYIAKSKK 529
Query: 539 -ANTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
N P+ +G L+ G D M +E L KP LR +E ++E++ G++SK DVL +
Sbjct: 530 GKNEFIVPSLLGMGLIDGLDKMEFEDISLSKPFLRKSLERSLEEIATGSRSKVDVLNTTI 589
Query: 595 QQMKACFLDA 604
+ +LDA
Sbjct: 590 ----SVYLDA 595
>gi|254565565|ref|XP_002489893.1| DNA Topoisomerase III, conserved protein that functions in a
complex with Sgs1p and Rmi1p [Komagataella pastoris
GS115]
gi|238029689|emb|CAY67612.1| DNA Topoisomerase III, conserved protein that functions in a
complex with Sgs1p and Rmi1p [Komagataella pastoris
GS115]
gi|328350304|emb|CCA36704.1| DNA topoisomerase III [Komagataella pastoris CBS 7435]
Length = 628
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/625 (37%), Positives = 354/625 (56%), Gaps = 24/625 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTG 66
+ +L VAEKPS+AKSVA L + + +R +Y K Y+F + G C + MTSV G
Sbjct: 1 MKILCVAEKPSIAKSVAYTLGGGK-VTVRNSSVKYVKNYDFTFEFPGVGRCSVTMTSVLG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPV-RKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
HL E+ D W C P +L+ + + K D K + + + EAR L++W DCD
Sbjct: 60 HLTEMTIDNNRYGWGKCLPINLFDSTIIVKENGNDSKKLVQNIANEARLSNQLMIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE+I +E++ N L L RA+FS L I A +N +++ DAV R
Sbjct: 120 REGEHIGWEILNAASKTNSSLTLENVWRAQFSHLERSHIISAAKNPKQLDRYAIDAVCTR 179
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLR G SFTRF T L K + + ++R L+ SYG CQFPTLGFVV+RY ++
Sbjct: 180 MELDLRAGFSFTRFLTDLFKT-NFQEIKEERRLI-SYGGCQFPTLGFVVDRYMRVKEFVP 237
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYE--MCVQEPTATVTKVRQQEKLKY 300
EEFW I+ K SW R HLFD +A+++YE + + + A + + + +
Sbjct: 238 EEFWYISIEVKKGNRKLPMSWSRPHLFDRLAAMLLYENSLDIAKDEAEIVHIISKPTSNF 297
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T++L+K S++F++S++ T+ AE LY GFISYPRTETD F T+L ++ +
Sbjct: 298 KPLPLTTVQLQKDCSKFFKLSAKETLDAAEKLYNQGFISYPRTETDRFDPKTDLKNLLSK 357
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q P WG Y Q LLD G R+P +G HDDKAHPPIHP ++ S++ +Y+
Sbjct: 358 QAESPQWGGYVQELLD---GKMRSPRAGKHDDKAHPPIHPICYTDFTKLKSRNEQLVYQY 414
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYV 479
V + F+AC S A G ++IV E F+ SG ++L KNYLD+Y + W +P +
Sbjct: 415 VTKRFIACCSDDAKGVKSIVTAKWGLETFTASGLMVLEKNYLDIYDYFKWTSTKELPEFT 474
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G++ L +G T PP +SE++L++ MD GIGTDAT+ +HI+K+L R YA K +
Sbjct: 475 LGEKVKLLKADLVTGKTSPPSYMSESELIALMDINGIGTDATIAEHIEKILAREYASKQS 534
Query: 540 -------NTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADV 589
PT +G ALV G++ +G++ L KP LR +E + +++ ++K +V
Sbjct: 535 LGESRSKKAYILPTELGCALVEGFNQIGFDNLSLSKPFLRKQLEESLAKITAKQETKNNV 594
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
L ++ + F+ + K+ L+++
Sbjct: 595 LDRFIELYRQAFMLSNQKQAILVKS 619
>gi|164428822|ref|XP_956391.2| hypothetical protein NCU00081 [Neurospora crassa OR74A]
gi|157072295|gb|EAA27155.2| hypothetical protein NCU00081 [Neurospora crassa OR74A]
Length = 638
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/500 (44%), Positives = 304/500 (60%), Gaps = 13/500 (2%)
Query: 39 RSRYNKIYEFNYSIRGQP---CHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRK 95
R Y K Y F G P + MT+V GHL +LDF + ++KW P L+ APV+
Sbjct: 3 RILYTKNYVFTCDF-GPPWGRSTVTMTAVRGHLTQLDFHQEFKKWEYPPPDRLFDAPVQT 61
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSA 155
P D K+I + +E +AR+ L +W DCDREGE+I E+ E R ++ + RARFS
Sbjct: 62 VYPHDMKNIAQNIENQARQADILYIWTDCDREGEHIGSEIREAARKGKRNIQVYRARFSN 121
Query: 156 LIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNL 215
+ I A + V + A+AV AR E+DLRIG++FTRF T+ L+ ++ D L
Sbjct: 122 IERAHILSAARRPVALDDKQAEAVAARIELDLRIGSAFTRFLTLSLRPLG-GAMAD---L 177
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAV 275
VLSYG CQFPTLGFVV+RY+ ++ E FW+I H+ E F+W R LFD S +
Sbjct: 178 VLSYGSCQFPTLGFVVDRYFRVRNFVPEPFWSIKVMHEKEGVKVNFNWSRNRLFDRLSVL 237
Query: 276 IIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA 335
++YE C+ A VT+V++++ K+ P PL+T+EL+K A+R+ RM+ + M VAE LY
Sbjct: 238 LLYERCLAAKIAKVTEVKEKQTKKWKPLPLTTVELQKMATRFLRMTGQEAMTVAEKLYNK 297
Query: 336 GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395
GFISYPRTETD F G NL +VQ+Q WGP+AQ L+D G ++ P G +DDKAH
Sbjct: 298 GFISYPRTETDRFDKGMNLRALVQKQTQDQRWGPFAQNLVD---GAFQQPRQGRNDDKAH 354
Query: 396 PPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRV 455
PPIHP +++ Q+ +LYE VVR FLAC S+ A GA T VEI E F G +
Sbjct: 355 PPIHPIIYAAPTVLDDQEK-RLYEFVVRRFLACCSEDARGAATDVEITYGEEKFVAHGLI 413
Query: 456 ILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+ +NYLDVY +E+W G +P + G+ F PT + G T P L+EADL++ MD
Sbjct: 414 VHQRNYLDVYPYENWTGTAGLPKFTVGETFEPTEAMMTEGKTTAPSYLTEADLIALMDAN 473
Query: 515 GIGTDATMHDHIKKLLDRFY 534
GIGTDATM HI+K+ +R Y
Sbjct: 474 GIGTDATMAQHIEKIKERQY 493
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT++G AL+ G++ M +E L KP LR ME MK + G ++ +L + +
Sbjct: 553 FIPTSLGVALIEGFERMNFETSLGKPFLRKEMELKMKAICEGRLTRDALLRESIASYRQV 612
Query: 601 FLDARLKKVKLLEA 614
+ +R ++V LL+A
Sbjct: 613 YDQSR-EEVNLLKA 625
>gi|303310917|ref|XP_003065470.1| DNA topoisomerase family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105132|gb|EER23325.1| DNA topoisomerase family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 618
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 235/622 (37%), Positives = 354/622 (56%), Gaps = 38/622 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKP++AK+VA LS + ++Y K YEF +S G P + MTSV G
Sbjct: 5 ILCVAEKPAIAKAVAQHLSGGALRTVAIRGNQYVKNYEFQFSF-GPPWGNSSVTMTSVIG 63
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL LDF+ +R W SC P L+ APV V +DK I + + +AR+ L +W DCDR
Sbjct: 64 HLTALDFESEWRHWQSCPPGQLFDAPVVNDVDKDKIGIAENIRNKARQADALFIWTDCDR 123
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV N + ++RA+FS + +A +N + ++ +AV AR E+D
Sbjct: 124 EGEHIGSEVRTQAVGANPRIEVKRAKFSNTERAHVLRAARNPIALDERQINAVAARIELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR T+ L + +R ++SYG + Y+ ++ + E +W
Sbjct: 184 LRIGAAFTRLLTLQLG--ALGGALSER--LISYGK----------KTYFRVKNFKPEPYW 229
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I +H + T F+W RG+LFD + V+I+E C+ TA VTKV ++ K+ P PL+
Sbjct: 230 SIKVTHARDGKTVNFTWSRGNLFDRAAVVMIFERCLTAKTAKVTKVNKKPTKKWRPLPLT 289
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L+ S++ RM S+ MKVAE LY GFISYPRTETD F G +L ++++QI
Sbjct: 290 TVDLQMMGSKFLRMDSQKVMKVAESLYTKGFISYPRTETDQFDKGIDLKKLIEKQIQDGV 349
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG Y+Q L+ AG ++ P SG H+D+AHPPIHP + + S + D ++YE VVR FL
Sbjct: 350 WGQYSQGLM---AGGFKQPRSGRHNDQAHPPIHPVTYVA-PSVLTADERRVYEFVVRRFL 405
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFI 485
AC S A G + V+I E F G ++L +NYLD+Y ++ W +P + G+ F
Sbjct: 406 ACCSDDAKGETSEVDIQYGDEKFHAQGLIVLERNYLDIYVYDKWESSQELPKFTVGEVFE 465
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--------K 537
P + G T PP L+E +L+ MD GIGTDATM +HI K+ DR Y +
Sbjct: 466 PKEAKITEGKTTPPNYLTEPELIGLMDANGIGTDATMAEHIFKIKDRQYVATRRRGGNGR 525
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELW------KPNLRSMMESDMKEVSVGNKSKADVLA 591
++ F PT +G ALV GYD++ +L KP LR ME M+++ G ++ V++
Sbjct: 526 NSVEEFIPTKLGVALVEGYDNLVLDLADCPSLCKPFLRKEMELRMRDICAGTTTRRQVVS 585
Query: 592 NCLQQMKACFLDARLKKVKLLE 613
L+ + F+ + +++++L+
Sbjct: 586 ENLEMYRRVFVHTQ-RRIEVLK 606
>gi|367016122|ref|XP_003682560.1| hypothetical protein TDEL_0F05380 [Torulaspora delbrueckii]
gi|359750222|emb|CCE93349.1| hypothetical protein TDEL_0F05380 [Torulaspora delbrueckii]
Length = 652
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 245/643 (38%), Positives = 355/643 (55%), Gaps = 38/643 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS---IRGQP--CHMLMT 62
+ VL VAEK S+AK+VA IL + R+ Y K Y+F+Y QP C + MT
Sbjct: 1 MKVLCVAEKNSIAKAVAQILGGGRST-ARDSTYMYVKNYDFHYDGFPFASQPGGCQVTMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL +DF W C+ +L+ APV + + ++++ I + +++EA++ +L++W
Sbjct: 60 SVAGHLSGVDFQSDRYGWGKCNVQELFDAPVSEVLDKNQRKIAENIKKEAQKADFLMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
DCDREGE I +E+ N L V+ RA FS L R I QA +N + +AV
Sbjct: 120 DCDREGEYIGWEIFREANRGNRRLTEAVVYRAVFSHLERRHILQAARNPQRLDMRSVNAV 179
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDR------------NLVLSYGPCQFPTL 227
R EIDLR G +FTR T ++N S R + V+SYG CQFPTL
Sbjct: 180 GTRMEIDLRAGVTFTRLLTETMRNKVGQSNGISRPANGSNANKKKDSTVISYGTCQFPTL 239
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEP-- 285
GFVV+R+ I+ SEEFW I SE+ + F W RGHLFD S + IYE C++
Sbjct: 240 GFVVDRFERIRNFVSEEFWYIQLQVVSEQASTIFQWERGHLFDRLSVLAIYEACIETAGN 299
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
A V+ +R + KY P PL+T+EL+K SR+F+++++ ++ AE LYQ GF+SYPRTET
Sbjct: 300 IAKVSDLRSKPTSKYRPLPLTTVELQKNCSRFFKLNAKQSLDAAEKLYQKGFLSYPRTET 359
Query: 346 DSFSSGTNLHGIV-------QEQIGHPDWGPYAQRLLDHAAG--LWRNPGSGGHDDKAHP 396
D+F +L G+V Q+ W YA LL G ++ P SG HDDKAHP
Sbjct: 360 DTFPDKMDLKGLVTNQAQLDQDNTSRSAWANYAANLLSDTPGSNKFKWPRSGSHDDKAHP 419
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
PIHP ++ + K+YE V RHFLAC S+ A G T + ++ GE F+ +G V+
Sbjct: 420 PIHPVISLGPQANVTPTERKIYEYVARHFLACCSEDAKGQSTTLTLDWGGEKFTATGLVV 479
Query: 457 LAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
+N+LDVY + W +P Q+ + SG T PP ++E++L+ MD G
Sbjct: 480 FERNFLDVYPWAKWETTKQVPRLELNQECRLEKCEMRSGSTSPPKPMTESELIMLMDVNG 539
Query: 516 IGTDATMHDHIKKLLDRFYAIKDAN---TRFAPTNIGEALVMGYDDMGYE--LWKPNLRS 570
IGTDAT+ +HI+K+ R Y + T PT +G ALV G++ +G E KP R
Sbjct: 540 IGTDATIAEHIEKIQVRNYIKSEKTGKETYLQPTILGVALVHGFEAIGLEDSFAKPFQRK 599
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
ME +++++ G ++K DV+ N + + + + K KLLE
Sbjct: 600 EMEDELRQICGGTRTKNDVIVNIMGKYRNYWAKTNSSKGKLLE 642
>gi|154412191|ref|XP_001579129.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121913332|gb|EAY18143.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 662
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/602 (38%), Positives = 338/602 (56%), Gaps = 22/602 (3%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
P +L VAEKPSVA+ A ILS N + ++G+S++N + F +G+ ++ TSV G
Sbjct: 2 PKKILCVAEKPSVAREAAKILS-NGHMETKKGKSKFNNNFVFQRDFQGEDVKVVFTSVAG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H++ F + W + L+ + + + + + L+ +A++ + LWLD DR
Sbjct: 61 HVLNYCFPPECKNWQTFGNTKLFDCQLNTCITANMEKVVGNLQTQAKKAFLVFLWLDNDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE I+ EV E+C+ VN + +RARFS L REI A N N+ A AV RQEID
Sbjct: 121 EGEGISEEVEEICKQVNENANYKRARFSGLSPREIIHAFNNPTPINRNDAAAVKLRQEID 180
Query: 187 LRIGASFTRFQTM---LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
LRIG++FTRFQ+ +L+N + +S+GPCQFPTLGFVVE ++ H E
Sbjct: 181 LRIGSAFTRFQSQFKGMLQNAEL----------ISFGPCQFPTLGFVVEAFFNHIKHVPE 230
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW I + T W R LF SA IY + P A V V ++E L P
Sbjct: 231 SFWKIEPLITKDNIKVTLKWDRKRLFCKLSAFAIYVDILDNPMAKVLTVDERESLSNKPL 290
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PLSTIEL++R S+Y ++S++ +M+ AE LYQ G ISYPRTETDSFS+ IV
Sbjct: 291 PLSTIELQRRCSKYLKISAQRSMEAAEKLYQNGCISYPRTETDSFSADFKFKDIVNALTR 350
Query: 364 HP-DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+ G Y+ ++L P +G H D AHPPI+P K + D K++E V
Sbjct: 351 FKGEIGQYSNKILQQIVP----PRAGKHSDNAHPPIYPIKVPDKFD--TPDQQKVFEFVC 404
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLAC S+ V T V +I GE F G +L +N+ ++Y + + G IP + +
Sbjct: 405 RHFLACCSKDGVSLATRVTFDINGEQFHLKGTRVLEENWHEIYPYIPFKGTKIPEFKVDE 464
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
PT + L+ G T PPLL+E DLL M++ GIGTDAT DHI K+++R Y +++ N
Sbjct: 465 LISPTNIELNEGKTTAPPLLTEPDLLKKMNQEGIGTDATYQDHIAKIMERKYIVQE-NNY 523
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
F PT +G AL GY+ MG++ KP LR+ ME ++++S G ++ V N ++Q + ++
Sbjct: 524 FKPTPLGLALNDGYEGMGFDFMKPRLRAEMEQGLQDISSGRQTYDAVRNNFIKQYRDAYV 583
Query: 603 DA 604
A
Sbjct: 584 TA 585
>gi|336273746|ref|XP_003351627.1| TOP3 protein [Sordaria macrospora k-hell]
gi|380095906|emb|CCC05953.1| putative TOP3 protein [Sordaria macrospora k-hell]
Length = 603
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/475 (45%), Positives = 292/475 (61%), Gaps = 9/475 (1%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MT+V GHL +LDF + ++KW P L+ APV+ P D K I + +E +AR+ L +
Sbjct: 1 MTAVRGHLTQLDFHQEFKKWEYPPPDRLFDAPVQTSYPNDMKVIAQNIESQARQADILYI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
W DCDREGE+I E+ E R ++ + RARFS + I A + V ++ A+AV
Sbjct: 61 WTDCDREGEHIGSEIREAARKGKRNIQVFRARFSNIERAHILSAARRPVPLDERQAEAVA 120
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
AR E+DLRIG++FTRF T+ L+ + D LVLSYG CQFPTLGFVV+RY+ ++
Sbjct: 121 ARIELDLRIGSAFTRFLTLSLQR--LGGPLD--GLVLSYGSCQFPTLGFVVDRYFRVRNF 176
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
E FW+I H+ E F+W R LFD S +I YE C+ A VT +++++ K+
Sbjct: 177 VPEPFWSIKVMHEKEGAKVHFNWSRNRLFDRLSVLIFYERCLAAKIAKVTDIKEKQTKKW 236
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T+EL+K A+R+ RM+ + M VAE LYQ GFISYPRTETD F G NL +VQ+
Sbjct: 237 KPLPLTTVELQKMATRFLRMTGQEAMTVAEKLYQKGFISYPRTETDRFDKGMNLRALVQK 296
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
WGP+A L+D G ++ P G +DDKAHPPIHP +++ Q+ KLYE
Sbjct: 297 HTQDHRWGPFAHNLVD---GAFQQPRQGKNDDKAHPPIHPITYAAPTVLDEQER-KLYEF 352
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYV 479
VVR FLAC S+ A GA T VEI E F G ++ +NYLDVY +E+W G +P +
Sbjct: 353 VVRRFLACCSEDARGATTDVEITYGEEKFVAHGLIVHQRNYLDVYPYENWTGTTELPRFT 412
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
G+ F PT + G T P L+EADL++ MD GIGTDATM HI+K+ +R Y
Sbjct: 413 VGETFEPTEAMMTEGKTTAPNYLTEADLIALMDANGIGTDATMAQHIEKIKERQY 467
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT++G AL+MG++ M +E L KP LR ME MK + G ++ VL + +
Sbjct: 528 FIPTSLGVALIMGFERMNFETSLGKPFLRKEMELKMKAICEGRLTRDAVLRESIASYRHV 587
Query: 601 FLDARLKKVKLLEAM 615
+ +R ++V LL+A+
Sbjct: 588 YDQSR-EEVNLLKAV 601
>gi|327293864|ref|XP_003231628.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
gi|326466256|gb|EGD91709.1| DNA topoisomerase III [Trichophyton rubrum CBS 118892]
Length = 632
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/600 (38%), Positives = 320/600 (53%), Gaps = 61/600 (10%)
Query: 60 LMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
+MTSV GHL+ +F+ RY+ W SCDP+ L+ AP+ V D + I ++ ARR L
Sbjct: 1 MMTSVLGHLLSYEFEPRYKSWTSCDPSVLFDAPIEVFVSSDSEPIADNIKRHARRADVLF 60
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWF 175
W DCDREGE+I E+ V N LV RA F + I AV V+ ++
Sbjct: 61 NWTDCDREGEHIDTEIRSVAAQSNQALVRASGTVRAYFFNIERTHIIHAVHCPVNLDEAQ 120
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A+AV +R E+DLR+GASFTR T+ L+ + ++SYG CQFPTLGF+ ERYW
Sbjct: 121 ANAVASRIELDLRVGASFTRHLTLSLRPILQRGNLSEACQLISYGSCQFPTLGFIAERYW 180
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQ 295
++ E FW+I H+ FSW R HLFD + A I+YE C+ A V KV+
Sbjct: 181 RVRNFIPEPFWSIKLMHQKAGARVNFSWARKHLFDRSIADILYERCLDSQNAQVQKVKTT 240
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLH 355
K+ P PL+T+EL+K SR+F M+S+ +++AE LYQ G+ISYPRTETD F G +L
Sbjct: 241 PTSKWKPLPLTTLELQKCGSRFFGMNSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLR 300
Query: 356 GIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY 415
G+VQ+Q W YA L++ W P +G ++DKAHPPIHP F + + S +
Sbjct: 301 GLVQKQAQGGRWADYATALVEGGGFSW--PRNGHNNDKAHPPIHPVNFVN-PATLSHEEQ 357
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
+++E ++R FLAC S+ A G++T + I E F SG VIL NYLDVY ++ W +
Sbjct: 358 RVHEFIIRRFLACCSKDAQGSKTDISILYGPEKFQASGLVILEHNYLDVYVYDRWSNQEL 417
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
PT++ G+ F PT L G PP L+E DLL+ M+ GIGTDATM DHI ++DR Y
Sbjct: 418 PTFIEGEVFEPTEAMLSEGKISPPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYV 477
Query: 536 IKDANTR----------------------------------------------------F 543
A R F
Sbjct: 478 EARAQPRQVQHGNDEEKSEELSAQARGGNGHRGRIAVAPRRGGRNSGAGCGGAITGVREF 537
Query: 544 APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
P +G ALV G+++MG+E L KP LR ME M + G +K V+ ++Q + +
Sbjct: 538 IPMTLGIALVEGHENMGFETNLMKPFLRREMELKMTAICNGQTTKTRVVNETIEQYRGVY 597
>gi|443926203|gb|ELU44921.1| DNA topoisomerase type I [Rhizoctonia solani AG-1 IA]
Length = 3005
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 249/605 (41%), Positives = 352/605 (58%), Gaps = 76/605 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+AKSV R +S Y+K Y+F Y+ G + MT+V+GH
Sbjct: 2073 MKVLCVAEKPSIAKSV------------RPTQSPYHKNYDFYYAKTGD--NYTMTAVSGH 2118
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L E DF R W+SCDP L+ AP+ V +D + I++ L EAR Q L++W DCDRE
Sbjct: 2119 LTEKDFGSALRSWNSCDPFQLFDAPIETRVSKDGERIERNLLSEARGAQMLMIWTDCDRE 2178
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALID-REIHQAVQNLVDPNQWFADAVDARQEID 186
GENI EV VC N + ++RARFSA+I R+IH A QN VD ++ ADAV+AR +D
Sbjct: 2179 GENIGAEVEAVCLRSNPRIRVKRARFSAIIPARQIHHAAQNPVDLDRAQADAVEARILLD 2238
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR GA+FTR QT+ L+ + ++SYGPCQFPTLGFVV RY ++QA E FW
Sbjct: 2239 LRYGAAFTRMQTLTLQ----PRFPQLQEGLISYGPCQFPTLGFVVSRYEQVQAFVPEPFW 2294
Query: 247 TINCSHKS-----EEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
I+ S S EE TA FSW R H+F++ A+ +YE V+ PTA VTKV ++ K+
Sbjct: 2295 YIHLSIVSPDADDEEETA-FSWRRHHVFEFDVALALYEGTVENPTARVTKVTKKPTKKWK 2353
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T+EL+K ASR M+ + + VAE LY GF+SYPRTETD F + ++ +Q
Sbjct: 2354 PLPLTTVELQKAASRLLHMTPKKALDVAEKLYNDGFLSYPRTETDQFDPAFDFDSLIAKQ 2413
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS---GESRWSQDHYKLY 418
PDWG +A L + G ++ P G +DKAHPPIHPT + GE++ K+Y
Sbjct: 2414 TVDPDWGGFAAGLQN---GGFQRPRDGKKNDKAHPPIHPTAHAGNLVGEAK------KVY 2464
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
E V R FLAC S+ A G +T V++ + E FS +G+ +NYL+VY+++ W G +P +
Sbjct: 2465 EYVARRFLACCSKDAEGFQTTVDVVVNDEEFSATGK----RNYLEVYKYDKWVGKHLPDF 2520
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI-- 536
GQ+F+P TDAT+ HI+ ++DR Y I
Sbjct: 2521 QEGQEFMPR------------------------------TDATIAQHIQTIIDRQYVIAR 2550
Query: 537 KDANTRF-APTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
++ +T++ P+ +G L+ GY+ +G++ L KP LR E M +V +KA+++A
Sbjct: 2551 QEGSTKYLVPSTLGIGLIEGYNRIGFDKSLSKPLLRRETERMMVQVCDRQTTKAEMMARS 2610
Query: 594 LQQMK 598
+ Q K
Sbjct: 2611 IDQYK 2615
>gi|448521188|ref|XP_003868447.1| Top3 protein [Candida orthopsilosis Co 90-125]
gi|380352787|emb|CCG25543.1| Top3 protein [Candida orthopsilosis]
Length = 617
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/609 (37%), Positives = 351/609 (57%), Gaps = 28/609 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI--RGQPCHMLMTSVT 65
+ +L VAEKPS+AK VA IL + + +R +++Y K Y+F ++ RG C + MTSV
Sbjct: 1 MKILCVAEKPSIAKEVANILGGGR-VSVRNSKNKYIKNYDFKFAFPDRGL-CDVTMTSVV 58
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ LDF +Y+ W C L+ A + + K+D+ + EAR L++W DCD
Sbjct: 59 GHITNLDFPPQYQ-WGKCAAERLFTAEIITKIT--KQDVFDNIAIEARNSDKLMIWTDCD 115
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE I E+ + + N + L R++FS L I +A ++ ++ + A AV R
Sbjct: 116 REGEFIGKEIFDAAKKGNSRISLSDVWRSKFSHLERNHILRAAKSPIELDMKAASAVSCR 175
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+D R+G SFTR T LK+ +I D+ + SYG CQFPTLGFVV+RY +++ +
Sbjct: 176 MELDFRVGTSFTRLLTDNLKSKNII----DKKDIASYGTCQFPTLGFVVDRYKRVKSFKP 231
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E FW I + E TF+W++GH+FD +++YE C++ +TK+ + Y P
Sbjct: 232 EPFWYIEPMLRKESKRTTFNWVKGHIFDRLYVLLMYERCLKHEQGEITKLETKPTSNYRP 291
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+EL+K ++YF+MS++ T++ AE LY GFISYPRTETD + + GI ++Q
Sbjct: 292 LPLTTVELQKDCAKYFKMSAKATLEAAEKLYNRGFISYPRTETDKYPPTMDFKGIFEKQK 351
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG Y+ LL + P +G HDD AHP IHP + S +S S + K+YE VV
Sbjct: 352 QDSRWGSYSGGLLSNGH---EQPRNGSHDDHAHPAIHPVNYVSIDSLGSANEKKVYEYVV 408
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHG 481
R FLAC S+ A G T + E F+ SG ++ +NYLD++ ++ W +P++ G
Sbjct: 409 RRFLACCSKDAKGMLTSATLKWGDEFFTASGLMVTERNYLDIFTYKKWESSKSLPSFHEG 468
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ ++ + G T PP L++E +L++ MD GIGTDAT+ +HI K+L R Y K
Sbjct: 469 EKVKISSGLMKEGKTSPPQLMTEPELIALMDANGIGTDATIAEHIDKILSRKYVTKVKRG 528
Query: 542 R---FAPTNIGEALVMGYDDM---GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+ P+ +G L+ G+D M G L KP LR +E+ ++++ G K+K +V ++
Sbjct: 529 KVEYIEPSPLGIGLIEGFDKMEFNGISLSKPFLRKALENSLQDICNGTKTKPEV----VE 584
Query: 596 QMKACFLDA 604
+MK + DA
Sbjct: 585 EMKRIYHDA 593
>gi|392512614|emb|CAD25295.2| DNA TOPOISOMERASE III [Encephalitozoon cuniculi GB-M1]
Length = 722
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/575 (39%), Positives = 336/575 (58%), Gaps = 25/575 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LNVAEKPSVA+S++ ILSK L +R G +Y F+Y M+ TSV GH
Sbjct: 1 MRILNVAEKPSVARSISSILSKE--LNVRRGLHQYCPNIHFDYG-----NQMVFTSVLGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ DF+E+ R W DP L+ + KHV + +K+ +E EA +C +++W DCDRE
Sbjct: 54 LLSSDFEEKSR-WDEVDPEVLFTDRIVKHVQPEFVKVKENIEREALKCDMVIIWTDCDRE 112
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI ++ ++ V + +RRARFS + R++ A++NL + N+ A+AV+ R E+DL
Sbjct: 113 GENIGRQIRDIVLKVK-KIDVRRARFSGITLRDVESALRNLGEINEAEAEAVEVRIELDL 171
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIG++FTR QT+ L +LS+GPCQ PTLGFVVER E ++ E FWT
Sbjct: 172 RIGSAFTRLQTLSLGR------ARQGKKILSFGPCQVPTLGFVVERARERESFVPEIFWT 225
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+ + F+W RG +FD V + E V++ +EK KY P PL T
Sbjct: 226 LKFKAMHKGFKDEFTWRRGPVFDRNCVVCFFNSLSGEDARIVSR-EVKEKTKYRPLPLRT 284
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL+K+ S YFR+S M++AE LY G+ISYPRTETD F + I+ +
Sbjct: 285 VELQKKCSSYFRLSGHKVMEIAEGLYNRGYISYPRTETDVFDRKFDFKHILGKLCKDSKV 344
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA +L+ G + +P +G ++D AH PI+P K SG S +D +Y+ V R FL
Sbjct: 345 GEYASKLM----GEFNHPRNGKNNDMAHLPIYPLKEGSGLSGSDRD---IYDFVSRRFLG 397
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C+++ A G ET E+ I E+F SG ++ +NYL+VY ++ W + + ++ +
Sbjct: 398 CIAKDAKGLETRYELKIGLEMFDLSGIRVIERNYLEVYYYDKWDDKEVGDFAV-EEIVSG 456
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L +D G T P LSEA+L+ MDK GIGTDAT+H+HI+K+ +R YA+K A P N
Sbjct: 457 DLEIDEGETSAPKYLSEAELIGLMDKNGIGTDATIHEHIQKIQERGYAVKVAE-EIRPLN 515
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
+G AL+ GY+ G + KP LR +E +K++S G
Sbjct: 516 LGTALIEGYERFGLNVGKPELRKSLEVSLKKISDG 550
>gi|50311957|ref|XP_456010.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645146|emb|CAG98718.1| KLLA0F20724p [Kluyveromyces lactis]
Length = 659
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 240/623 (38%), Positives = 348/623 (55%), Gaps = 46/623 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS---IRGQPCHMLMTSV 64
+ +L VAEK S+AK+VA ILS + +R S Y K Y+F Y + C++ MT+V
Sbjct: 2 VKILCVAEKNSIAKNVAQILSGGRS-SMRPSTSPYIKNYDFQYDFQWLNMGRCNVTMTAV 60
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHLM L F + W CDP L+ AP + E I K L+ E R L++W DC
Sbjct: 61 AGHLMNLAFSQNEYGWGKCDPNLLFDAPT---IDEMDDKIVKNLQNEGRHATHLMIWTDC 117
Query: 125 DREGENIAFEVIEVCRAVN-------CHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
DREGE I +E+++ AVN + RA FS L I + +Q D
Sbjct: 118 DREGECIGWEIVQ---AVNRSNSSLVSSDSVYRAVFSHLEPSHIIASANRPRKLDQRQVD 174
Query: 178 AVDARQEIDLRIGASFTR-----FQTMLLKNFHIDSVTD-DRNLVLSYGPCQFPTLGFVV 231
AV ARQEIDLR G +FTR ++++L + + D V+SYG CQFPTLGFVV
Sbjct: 175 AVRARQEIDLRAGLAFTRLLTGNYRSVLQSDLEYKQLAKKDDKPVISYGTCQFPTLGFVV 234
Query: 232 ERYWEIQAHESEEFWTINCSHKSEEGTAT---FSWMRGHLFDYTSAVIIYEMCVQ--EPT 286
+RY + E+FW I S K +G+ + F W RGHLFD + + IYE C+ E
Sbjct: 235 DRYERVINFIPEQFWHILLSVKDLDGSESKVKFQWERGHLFDRLAVLSIYEHCIGTCEDR 294
Query: 287 ATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD 346
A V V ++ K+ P PL+T+EL+K SR+F++S++ T+ AE LYQ G+ISYPRTETD
Sbjct: 295 AKVIHVSSKDTKKFRPLPLTTVELQKNCSRFFKLSAKKTLDAAEKLYQQGYISYPRTETD 354
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPYAQRLLDH---AAGLWRNPGSGGHDDKAHPPIHP--- 400
F + T+L ++ + GH +WGPY L++ + ++ P SG HDD+AHPPIHP
Sbjct: 355 KFPAKTDLKSLLNKHQGHSEWGPYVTNLMNENSTSTNKYQWPRSGNHDDQAHPPIHPILC 414
Query: 401 TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
+ ++R + D +Y VV+HFLAC S A G T ++++ GE F +G +L +N
Sbjct: 415 VDIAKTDNRMTSDEKTVYNYVVKHFLACCSTDARGRSTTLKLDWGGETFYANGIQVLERN 474
Query: 461 YLDVYRFESW-GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTD 519
+LD+Y++ W +P Y + + + SG T PP ++E++L+ MD GIGTD
Sbjct: 475 FLDIYQWADWKSNDTLPAYQMSDDVVVSKTEMKSGQTSPPKHMTESELIMLMDANGIGTD 534
Query: 520 ATMHDHIKKLLDRFY---------AIKDANTRFAPTNIGEALVMGYDDMGYE--LWKPNL 568
AT+ DHI+K+ R Y K + F PT++G +LV G++ +G E KP L
Sbjct: 535 ATIADHIEKIKSRNYIKVQTGSGSGAKKTASVFLPTSLGRSLVHGFEKIGLEESFSKPFL 594
Query: 569 RSMMESDMKEVSVGNKSKADVLA 591
R +E D++ + G K K DV++
Sbjct: 595 RRDLEKDLQLICGGTKDKKDVVS 617
>gi|260946535|ref|XP_002617565.1| hypothetical protein CLUG_03009 [Clavispora lusitaniae ATCC 42720]
gi|238849419|gb|EEQ38883.1| hypothetical protein CLUG_03009 [Clavispora lusitaniae ATCC 42720]
Length = 627
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/624 (38%), Positives = 349/624 (55%), Gaps = 25/624 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTG 66
+ VL VAEK S+AK VA ILS R R+ ++ K Y+F Y+ C++ MT+V+G
Sbjct: 1 MKVLCVAEKNSIAKEVANILSGGSS-RTRDSTYKFVKNYDFVYTFPALGRCNVTMTAVSG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDK----KDIKKTLEEEARRCQWLVLWL 122
H++ DF Y W C P L+ AP V +DK + I + +EAR L++W
Sbjct: 60 HILGTDFGPEY-AWGKCPPGRLFDAPFITKVSQDKDKRSQRIHDNIIKEARSADRLMIWT 118
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAV 179
DCDREGE I +E++ V + N + L RA+FS L + A N + + +AV
Sbjct: 119 DCDREGEYIGWEIMHVAQQRNPSITLANTWRAQFSHLEPSHVVHAACNPLQLDMKLVEAV 178
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
D R+E DLR+G SFTRF T L K+ S+ D+++V SYG CQFPTL FVV+RY ++
Sbjct: 179 DCRKEFDLRVGTSFTRFLTNLYKS---KSLVGDKDVV-SYGTCQFPTLSFVVDRYLRVRK 234
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTA-TVTKVRQQEKL 298
E FW I+ + +FSW RGHLFD ++Y ++ + V+ V +
Sbjct: 235 FRPEPFWFIDLVVDQKNQKVSFSWSRGHLFDKAFVYLLYAQIMRSNSPPIVSSVGTKPTS 294
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
Y P+PL+T+EL+K SRYFRMS++ + AE LY AGFISYPRTETDSF +L +
Sbjct: 295 HYRPFPLTTVELQKCCSRYFRMSAKQALDAAESLYTAGFISYPRTETDSFPENMDLKSYI 354
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
+Q WG YA L + +R+P G HDDKAHPPI+P K+++ +S D K+Y
Sbjct: 355 TKQAQDARWGSYANMLT--SENRYRHPRGGKHDDKAHPPIYPVKYANIDS-LRGDQKKVY 411
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPT 477
E VVR FLAC S A G +T VE+ E FS SG + +N+LDVY + W V +P
Sbjct: 412 EFVVRRFLACCSDDARGFQTKVEVQWTSEKFSASGVQVTERNFLDVYPYTDWKSSVQLPE 471
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ +G+ + L G T P ++E +L++ MD GIGTDAT+ +HI K++ R Y +
Sbjct: 472 FRNGETLKAHSCKLKEGKTTAPNYMTETELIALMDANGIGTDATIAEHIDKIITRNYISR 531
Query: 538 ---DANTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLA 591
N F PT++G +L+ +D + + L KP LR +E ++ ++ G +K V+
Sbjct: 532 RKQGKNEIFIPTSLGISLIQAFDAILIDRISLSKPFLRRALEGFLQRIARGETTKNLVIQ 591
Query: 592 NCLQQMKACFLDARLKKVKLLEAM 615
L K FL++ K +L+
Sbjct: 592 QLLPLYKEAFLESNQKSRVILDTF 615
>gi|300120095|emb|CBK19649.2| unnamed protein product [Blastocystis hominis]
Length = 770
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 253/705 (35%), Positives = 375/705 (53%), Gaps = 54/705 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LN+AEKPSVA+ V+ ILS+ Q LR R+G S+YN IYEF + Q M+ +S+TGH
Sbjct: 1 MRILNIAEKPSVAREVSNILSQGQ-LRARKGESQYNPIYEFRCHVLSQSDEMVFSSMTGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+MELDF + Y+ W + DPA L+ APV K V K I K ++ E R+CQ L LWLDCDRE
Sbjct: 60 MMELDFPDTYQSWRAVDPASLFQAPVFKSVNPKMKAIYKQIQNEGRKCQALCLWLDCDRE 119
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFS-ALIDREIHQAVQNLVDPNQWFAD-----AVDA 181
GENIAFEVI+ + VN +++ ++ A+I + +L +P + + A
Sbjct: 120 GENIAFEVIDCVKKVNASVMIYHILYTLAMI------FIPSLHEPTSPPSSLPTFGTLSA 173
Query: 182 RQEIDLRIGAS-FTRFQTMLLKNFHIDSVTDD--RNLVLSYGPCQFPTLGFVVERY---W 235
R + +RI TR + + ++ + L P Q PT+ R+ W
Sbjct: 174 RSPLPMRINPKPRTRARKSISESAASSLASKPCCSTTPLLRCPTQSPTVLASFRRWASSW 233
Query: 236 E-IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
I + ++ I+ + + W R HLFD ++ + E V ++ +
Sbjct: 234 NAICSDKTSSPSPIDHASQGTNQIVKLKWARNHLFDKLVVATLFSLIANEKKGVVLQMNE 293
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFI----------SYPRTE 344
++K K+ P PL+T+EL+KR +R+ ++SSE TMK+ E LYQ GFI SYPRTE
Sbjct: 294 RKKSKFKPLPLNTVELQKRVARHLKISSEETMKICEALYQKGFIRYEPNPPLIGSYPRTE 353
Query: 345 TDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF- 403
T F++GT+ ++Q Q G DWG YAQ+LL G + P +G DD AHPPIHPTK
Sbjct: 354 TAVFAAGTDFQSLIQVQSGASDWGTYAQKLL---GGDFAPPRAGKGDDHAHPPIHPTKLL 410
Query: 404 ------SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL 457
S G + + +YE + RHFLA S+ +V +ET +++ I E+FS G +I
Sbjct: 411 ERVNAGSIGGGFDASRVFAIYEYITRHFLASCSRDSVLSETELQVGIGTELFSAKGTIIR 470
Query: 458 AKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
+NYLDV+++E +P++V G+ +L ++ T P LLSE +L++ MDK GIG
Sbjct: 471 ERNYLDVFKYERLNENTLPSFVVGEAVEVASLGVEESTTAPE-LLSEPELIALMDKEGIG 529
Query: 518 TDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMK 577
TDAT+ +HI + +R YA K RF PTNIG ALV Y + Y L+KP LR+ ME +
Sbjct: 530 TDATISEHIATIQNRDYAKKTPANRFTPTNIGLALVETYMYLQYPLYKPYLRAHMERECT 589
Query: 578 EVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVR- 636
+S G +V+ +C+ +M + D KK + F + A
Sbjct: 590 AISEGKVHFQEVVDSCIGEMSLVYQDVNAKKDVFRDTFVQFLNKRIPELALPVASVAALV 649
Query: 637 --------QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
QCG ++ L + G +V L P C N++ LP
Sbjct: 650 TEHLIPCVQCG----GDLNLMAQKKGETVVRFLQCPTCGNSLSLP 690
>gi|294659706|ref|XP_002770630.1| DEHA2G13376p [Debaryomyces hansenii CBS767]
gi|199434172|emb|CAR65964.1| DEHA2G13376p [Debaryomyces hansenii CBS767]
Length = 624
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/605 (36%), Positives = 344/605 (56%), Gaps = 20/605 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-CHMLMTSVTG 66
+ +L VAEKPS++K+V+ +LS +R R +++Y K Y+F + G + MT+V G
Sbjct: 1 MKILCVAEKPSISKAVSQVLSGG-NVRTRNSKNKYIKNYDFKFDFPGYGLVDVTMTAVMG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF + W C+P L+ AP+ + KD+ + EAR L++W DCDR
Sbjct: 60 HITNMDFPNTF-SWGKCNPGRLFEAPLIDVI--SNKDVYNNISSEARSATKLMIWTDCDR 116
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I E+ N + + R++FS L + QA +N + + AV R
Sbjct: 117 EGEFIGHEIFLAAYKGNSSIKVEDIWRSQFSHLERSHVLQAAKNPIKLDMNSVYAVSCRM 176
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
EIDLR+GASFTRF T L + + + ++ +SYG CQFPTLGF+V+RY +++ +E
Sbjct: 177 EIDLRVGASFTRFLTELFRRSQV--IKMEKGSFISYGTCQFPTLGFIVDRYNRVKSFIAE 234
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+FW I+ K + FSW + HLFD ++Y+ C++ ++ + ++ + P
Sbjct: 235 DFWYISVEVKKDNQNVQFSWTKHHLFDRFYVTLLYQNCLENSEGKISNLTKKPTKNWRPL 294
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T++L+K S +F++S++ + AE LY GFISYPRTETD F +L I+++Q
Sbjct: 295 PLTTVQLQKDCSSFFKISAKRALDAAEKLYNKGFISYPRTETDKFPPTMDLRIIIEKQRQ 354
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG YA LLD +R P G +DDKAHPPIHP + + +S D K+YE VVR
Sbjct: 355 DSRWGTYASALLDQN---FRTPRGGNNDDKAHPPIHPVNYVNIDSLDKPDEKKVYEYVVR 411
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQ 482
+LAC S A G +T + E+F+ SG +L +NYLDVY + SW +P++ G+
Sbjct: 412 RYLACCSDDAKGEQTSATLQWGNEIFTASGLTVLERNYLDVYPYRSWESTRQLPSFTEGE 471
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--DAN 540
+ + G T P ++E +L++ MD GIGTDAT+ +HI K+L R Y +K +
Sbjct: 472 AIKISYSKMKEGRTGAPQHMTEPELIALMDVNGIGTDATIAEHIDKVLTRGYIVKIRQST 531
Query: 541 TRF-APTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
T + P+ +G L+ G++ M +E L KP LR +E+ ++E+ G +SK +VL+ +Q
Sbjct: 532 TEYIIPSELGMGLIEGFNQMEFENISLSKPFLRKRLENSLQEIVDGRRSKQNVLSEIVQL 591
Query: 597 MKACF 601
K +
Sbjct: 592 YKQAY 596
>gi|401826074|ref|XP_003887131.1| topoisomerase IA [Encephalitozoon hellem ATCC 50504]
gi|392998289|gb|AFM98150.1| topoisomerase IA [Encephalitozoon hellem ATCC 50504]
Length = 723
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/575 (39%), Positives = 338/575 (58%), Gaps = 25/575 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LNVAEKPSVA+S++ ILSK + +R G +Y +F+Y M+ TSV GH
Sbjct: 1 MRILNVAEKPSVARSISSILSKE--ISVRRGLHQYCPNIQFDYGD-----QMIFTSVLGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ DF ER +W DP L+ + K V D IK+ +E EA R +V+W DCDRE
Sbjct: 54 LLSSDF-ERKSRWDEIDPEMLFTERIVKFVHPDFAKIKENIEREALRSDMVVIWTDCDRE 112
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI ++ ++ V + ++RARFS + ++I A++NL + N+ ADAVD R E+DL
Sbjct: 113 GENIGRQIRDIVLKVK-KIDVKRARFSGITLKDIEGALKNLGEINEAEADAVDVRMELDL 171
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIG++FTR QT+ L ++ + ++S+GPCQ PTLGFVVER E + E FWT
Sbjct: 172 RIGSAFTRLQTLSL------GLSGEEKKIVSFGPCQVPTLGFVVERAKERERFVPEMFWT 225
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+ K+++ F+W RG +FD + VI + ++ +A + +E+ KY P PL T
Sbjct: 226 LKFKAKNKKLEDEFTWRRGSVFD-KNCVICFHRELEGESARIVLKEIKERTKYRPLPLRT 284
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL+K+ S YF++S M++AE LY G+ISYPRTETD F + I+ +
Sbjct: 285 VELQKKCSSYFKLSGHKVMEIAEGLYNRGYISYPRTETDVFDKKFDFKYILNKLSRDSKV 344
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA+RL A + P +G ++D AH PI+P K +G S +D +Y+ + R FL
Sbjct: 345 GEYAERL----ARGFNYPRNGKNNDMAHLPIYPLKEGTGLSGGDRD---IYDFICRRFLG 397
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
C+S+ A G ET E+ I EVF +G ++ +NYL+VY ++ W + + ++ +P
Sbjct: 398 CISKDAKGLETRYELKIGMEVFDLNGIRVVERNYLEVYYYDKWDNREVSDFAM-EELVPG 456
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L + G T P LSEA+L+S MDK GIGTDAT+H+HI+K+ +R YA K P
Sbjct: 457 DLYISEGETTAPKYLSEAELISLMDKNGIGTDATIHEHIQKIQERGYATK-VGEEIRPLG 515
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
+G AL+ GY+ G + KP LR +E ++K + G
Sbjct: 516 LGTALIDGYERFGLNVSKPELRKSLEINLKRICHG 550
>gi|308198103|ref|XP_001386841.2| DNA topoisomerase [Scheffersomyces stipitis CBS 6054]
gi|149388862|gb|EAZ62818.2| DNA topoisomerase [Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/605 (37%), Positives = 340/605 (56%), Gaps = 22/605 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-CHMLMTSVTG 66
+ +L VAEKPS+A+ V+ ILS + R R+++ K Y+F Y+ C + MTSV G
Sbjct: 1 MKILCVAEKPSIAREVSRILSGGR-FTTRNSRNKFIKNYDFTYNFTSLGICDVTMTSVVG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF Y +W C P L+ V + V K+D+ + EAR L++W DCDR
Sbjct: 60 HITNMDFPPAY-QWGRCVPGRLFDVEVIEKVT--KQDVFDNISNEARTASRLMIWTDCDR 116
Query: 127 EGENIAFEVIEVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I FE+ + N + + R++FS L I A + + +AV R
Sbjct: 117 EGEFIGFEIYKAAFKGNSAIQVGDIWRSQFSHLERSHIIDAASHPRSLDMNSVNAVACRM 176
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
EID R+G SFTR T LK I ++ + SYG CQFPTLGFVV+RY +++ E
Sbjct: 177 EIDFRVGTSFTRLLTDCLKQNRII----EKGGLASYGTCQFPTLGFVVDRYKRVKSFIPE 232
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+FW I + + ++F+W +G FD +Y+ C+Q T+T V + + P
Sbjct: 233 KFWYIAVDIRKQNQKSSFAWTKGRFFDRMFVTQLYQDCLQTEEGTITNVESKRTTNWRPL 292
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K +R+FRMS++ + AE LY GF+SYPRTETDSF + + G++ +Q G
Sbjct: 293 PLTTVELQKDCARFFRMSAKAALDAAERLYNKGFLSYPRTETDSFPATMDFAGVIAKQTG 352
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG YA L+ + + RN G HDDKAHP IHP + + +S S D K+YE VVR
Sbjct: 353 DGRWGAYANSLMANGHEMPRN---GSHDDKAHPAIHPVNYVAIDSLTSADEKKVYEYVVR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQ 482
FLAC S+ AVG +T + E F+ SG ++ KNYL++Y ++ W +P G+
Sbjct: 410 RFLACCSKDAVGHQTTATLQWGNETFTASGLIVTEKNYLEIYTYKKWETTKQLPPLEEGE 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK---DA 539
+ ++ + G T PP ++E +L++ MD GIGTDAT+ +HI+K++ R Y +K
Sbjct: 470 KVRISSGQMKEGETSPPNHMTETELIALMDANGIGTDATIAEHIEKIMQRDYIVKHKQGG 529
Query: 540 NTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
PT +G L+ G+D M ++ L KP LR ++E+ ++++ G ++KADVL Q
Sbjct: 530 KEYIVPTPLGMGLIEGFDQMEFDNISLSKPFLRKLLENSLQKIVDGERTKADVLEEVKQI 589
Query: 597 MKACF 601
+ +
Sbjct: 590 YRQAY 594
>gi|344301281|gb|EGW31593.1| DNA topoisomerase [Spathaspora passalidarum NRRL Y-27907]
Length = 613
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/605 (37%), Positives = 338/605 (55%), Gaps = 22/605 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-RGQPCHMLMTSVTG 66
+ VL VAEKPS+A++VA IL + +RE S+Y K Y+F+++ C + MTSV G
Sbjct: 1 MRVLCVAEKPSIARAVANILG-GGNVNMRESNSKYIKNYDFSFNFAEAGNCEVTMTSVVG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H++ L+ R W C L+ + + V DK+D+ + +EA L++W DCDR
Sbjct: 60 HIIRLETKPENR-WGMCSHGKLFDCDLVELV--DKQDVFDNISKEAATANKLMIWTDCDR 116
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE I FE+ + N + + R +FS L I +A N + + AV R
Sbjct: 117 EGEYIGFEIFKAANKGNRRIQIADIWRGKFSHLERNHIIRAANNPIRLDMKSVAAVACRM 176
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+D R+G SFTR T L+ ++ + V SYG CQFPTLGF+V+RY +++ E
Sbjct: 177 EVDFRVGTSFTRLLTESLRQHNLIESKE----VASYGTCQFPTLGFIVDRYKRVKSFVPE 232
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW I+ + + F+W +GH FD + +YE C++ T+ K+ + + P
Sbjct: 233 AFWFIDVEVMKDGTKSGFNWTKGHFFDRLYVLCLYERCLKHDFGTIVKLESKPTTNWRPL 292
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL+T+EL+K SRYF+MS++ + AE LY G+ISYPRTETD + + GI ++Q
Sbjct: 293 PLTTVELQKDCSRYFKMSAKRALDAAEKLYNNGYISYPRTETDKYPPTMDFRGIFEKQKQ 352
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG YA LL + RN G HDDKAHP IHP + + + +QD K+YE VVR
Sbjct: 353 DSRWGSYANDLLSSGHQMPRN---GSHDDKAHPAIHPVNYVNLAALDNQDQRKVYEYVVR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQ 482
FLAC S+ AVG T + E+F+ SG ++L +NYLDV+ ++ W +P++ G+
Sbjct: 410 RFLACCSKDAVGMSTTATLKWGDELFTASGLMVLERNYLDVFIYKKWESSKQLPSFTEGE 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD---A 539
Q ++ + G T PP ++E++L++ MD GIGTDAT+ +HI+K+L R Y K
Sbjct: 470 QIKISSGKMKEGKTAPPNHMTESELIALMDANGIGTDATIAEHIEKILTRRYIAKQKVGK 529
Query: 540 NTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
N P+ +G L+ G+D + +E L KP LR +E ++++ G K KA+V A +
Sbjct: 530 NEYIVPSKLGMGLIEGFDKLEFENISLSKPFLRRELEKSLQDIVNGTKIKAEVFAQVKEV 589
Query: 597 MKACF 601
K F
Sbjct: 590 YKKAF 594
>gi|302658516|ref|XP_003020961.1| hypothetical protein TRV_04955 [Trichophyton verrucosum HKI 0517]
gi|291184833|gb|EFE40343.1| hypothetical protein TRV_04955 [Trichophyton verrucosum HKI 0517]
Length = 573
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/569 (40%), Positives = 310/569 (54%), Gaps = 63/569 (11%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV GHL+ +F+ RY+ W SCDP+ L+ AP+ V D + + ++ ARR L +
Sbjct: 1 MTSVLGHLLGHEFEPRYKSWTSCDPSALFDAPIEVFVSSDGEPVADNIKRHARRADVLFI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFA 176
W DCDREGE+I E+ V N L RARFS + I A V+ ++ A
Sbjct: 61 WTDCDREGEHIGTEIRSVAAQSNQALGRAGGTVRARFSNIERTHIIHAAHRPVNLDEAQA 120
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
DAV +R E+DLR+GASFTR T+ L+ + + ++SYG CQFPTLGF+VERYW
Sbjct: 121 DAVASRIELDLRVGASFTRHLTLSLRPLLQRGNLSEASQLISYGSCQFPTLGFIVERYWR 180
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
++ E FW+I H+ FSW R HLFD +AVI+YE C+ A V KV+
Sbjct: 181 VRNFIPEPFWSIKLMHQKAGTWVNFSWARNHLFDRRTAVILYERCLTSQNARVQKVKTTP 240
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K+ P PL+T+EL+K SR+ M S+ +++AE LYQ G+ISYPRTETD F G +L G
Sbjct: 241 TSKWKPLPLTTLELQKCGSRFLGMDSQKVLQLAEKLYQKGWISYPRTETDQFDQGMDLRG 300
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGL-WRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY 415
+VQ+Q W YA L++ G W P +G ++DKAHPPIHP F + + S +
Sbjct: 301 LVQKQAQGGRWADYATALVEGGGGFSW--PRNGHNNDKAHPPIHPVNFVN-PATLSLEEQ 357
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
+++E VVR FLAC S+ A G++T + I E F SG VIL +NYLDVY ++ W +
Sbjct: 358 RVHEFVVRRFLACCSKDAQGSKTDISILYGPETFHASGLVILERNYLDVYVYDRWSNQEL 417
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P ++ G+ F PT L G T PP L+E DLL+ M+ GIGTD+TM DHI ++DR Y
Sbjct: 418 PPFIEGEVFEPTEAMLSEGKTSPPGYLTEPDLLALMNANGIGTDSTMADHIVTIIDRQYV 477
Query: 536 IKDANTR----------------------------------------------------- 542
A R
Sbjct: 478 EARAQPRQARHGHDEEEESEELPTQARGGNCRRGRTAVASRRGGRNSGAGRGGAITGVRE 537
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLR 569
F PT +G ALV G+++MG+E L KP LR
Sbjct: 538 FIPTTLGVALVEGHENMGFETDLMKPFLR 566
>gi|296814980|ref|XP_002847827.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
gi|238840852|gb|EEQ30514.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
Length = 631
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 243/639 (38%), Positives = 349/639 (54%), Gaps = 55/639 (8%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIR----EGRSRYNKIYEFNYSIRGQ--PCHMLMT 62
+L VAEKP++AK VA LS G R+R EG ++Y K YEF+++ C ++MT
Sbjct: 4 KILCVAEKPAIAKLVAQHLS---GGRLRTFNIEG-NQYVKNYEFDFTFDPPWGSCSVVMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPE----------DKKDIKKTLEEEA 112
SV GHL +F+ RYR W SC+P+ L+ A V V + +K I K ++ +A
Sbjct: 60 SVLGHLTTSEFEPRYRNWSSCNPSQLFDANVITSVDKVRILSRCAVHEKLGIAKNIKIQA 119
Query: 113 RRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPN 172
R + L +W DCDREGE I EV N + ++RA+FS + QA + + +
Sbjct: 120 RYSKALFIWTDCDREGEYIGSEVKAQAVLGNPRIEVKRAKFSNTERTHVLQAARGPIGLD 179
Query: 173 QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
+ DAV AR E+DLRIGA+FTR QT+ L+ + V ++ ++SYG CQFPTLGFVV+
Sbjct: 180 EQQVDAVAARIELDLRIGAAFTRLQTLQLQ--ALGGVLAEK--IISYGSCQFPTLGFVVD 235
Query: 233 RYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKV 292
RY ++ + E FW+I SH + T F+W RGHLFD V+++E C+ TATVTKV
Sbjct: 236 RYMRVKNFKPEAFWSIKVSHTRDSITVNFNWQRGHLFDRAVVVVLFERCIAAKTATVTKV 295
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGT 352
++ K+ P PL+T++L+ S+Y RM S+ M LY GF YP TETD F +
Sbjct: 296 NKKPTSKWRPLPLTTVDLQMMGSKYLRMDSQAIMS-RRSLYTRGFHQYPATETDQFDNEI 354
Query: 353 NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ 412
+L +V++Q WG G ++ P G ++DKAHPPIHP + +
Sbjct: 355 DLKKLVEKQYPSDIWG-----------GGFKQPRRGRNNDKAHPPIHPVAYVAPRV-LKA 402
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-G 471
D K+YE V R FLAC S+ A G T +EI E F T G V+L +NYLDVY ++ W
Sbjct: 403 DEKKVYEFVARRFLACCSEDAKGESTDIEIKYGDEQFHTRGLVVLERNYLDVYVYDKWES 462
Query: 472 GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
+P + + F P + G T P L+E +L+ MD GIGTDATM DHI K+
Sbjct: 463 SQPLPNFSLNETFEPREANITEGKTVAPGYLTEPELIGLMDANGIGTDATMADHISKIKQ 522
Query: 532 RFYAIKDANT----------RFAPTNIGEALVMGYDDMGY------ELWKPNLRSMMESD 575
R Y F PT +G ALV GYD++ L KP LR ME
Sbjct: 523 REYVATRPRGGGRGSGSSVEEFIPTKLGVALVEGYDNVVAGLPDCPSLTKPFLRKEMELR 582
Query: 576 MKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
M+++ G ++K +++ +Q + F + ++++LL+
Sbjct: 583 MRDICSGTRTKTEIVDQNVQMYREVFTHTQ-RRIELLKT 620
>gi|154315224|ref|XP_001556935.1| hypothetical protein BC1G_04651 [Botryotinia fuckeliana B05.10]
Length = 647
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 229/565 (40%), Positives = 313/565 (55%), Gaps = 59/565 (10%)
Query: 100 DKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDR 159
DKKDI + +E +AR + L +W DCDREGE+I EV N + ++RARFS +
Sbjct: 30 DKKDIAQNIEAQARDAKALFIWTDCDREGEHIGGEVRAQALKGNPRIEIKRARFSNIERA 89
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSY 219
+ QA +N V+ +Q DAV AR E+DLRIG +FTRFQT L+ T +LSY
Sbjct: 90 HVIQAAKNPVNLDQRQVDAVAARIELDLRIGYAFTRFQTTNLQKLGGPLATK----MLSY 145
Query: 220 GPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYE 279
G CQFPTLGFVV+RY++++ E FW+I +H E F+W R LFD +I++E
Sbjct: 146 GSCQFPTLGFVVDRYFKVKNFVPEPFWSIKVTHNRENMNVVFNWKRNRLFDRAVVIILFE 205
Query: 280 MCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFIS 339
C+ A VTKV+++ K+ P PL+T+EL+K ASR+ M+S+ M AE LY GFIS
Sbjct: 206 RCLAAKVAKVTKVQEKPTSKWKPLPLTTVELQKAASRWLNMNSQVAMTAAESLYTKGFIS 265
Query: 340 YPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIH 399
YPRTETD F G NL ++++Q+ WGP+AQ L++ G + P G +DDKAHPPIH
Sbjct: 266 YPRTETDRFDKGMNLRALIEKQVQDNRWGPFAQNLVN---GGFHWPREGRNDDKAHPPIH 322
Query: 400 PTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAK 459
P + + + + ++YE VVR FLAC S+ A G T VE+ E F T G V+LAK
Sbjct: 323 PVTYVASTA-LRPEEARVYEFVVRRFLACCSEDAKGQATDVELEYGEETFHTHGLVVLAK 381
Query: 460 NYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
NYLDVY +E W +P + G++F P + G T P L+E DL++ MD GIGT
Sbjct: 382 NYLDVYVYERWNSSTSLPKFTLGERFEPDEAMITDGKTTAPGFLTEPDLIALMDANGIGT 441
Query: 519 DATMHDHIKKLLDRFYAI------------KDANT------------------------- 541
DATM +HI K+ +R Y D NT
Sbjct: 442 DATMAEHIAKIKEREYVFTRPKVGGATARNNDDNTPAAGRGGRGGRGGRGGRGGRGGAAA 501
Query: 542 ----------RFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADV 589
F PT +G ALV GYD M +E L KP LR ME MK + G ++ +V
Sbjct: 502 ADAGGRGGVEEFIPTTLGVALVEGYDSMEFEVSLSKPFLRKQMELKMKAICEGQNTRQNV 561
Query: 590 LANCLQQMKACFLDARLKKVKLLEA 614
+ L Q FLD+ +++ +L+A
Sbjct: 562 VHESLTQYYRVFLDS-TERLSVLKA 585
>gi|356540116|ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max]
Length = 863
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 233/634 (36%), Positives = 362/634 (57%), Gaps = 23/634 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A S+A +LS Q + R G + +++EF+ G P H +TSV GH+
Sbjct: 7 KVLMVAEKPSIALSIASVLSHAQ-MFTRRGST---EVHEFDGKFLGSPAHFRVTSVIGHV 62
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+DF +Y+ W + DP DL+ A V K+ K I + L +EAR C++LVLWLDCDREG
Sbjct: 63 FSVDFPGKYQDWAATDPLDLFQAQVIKNESNPKAHICRHLSQEARGCRYLVLWLDCDREG 122
Query: 129 ENIAFEVIEVCRAVNCHLV-LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEVI ++ H+ RARFS++ ++++ +A+ NLV PN+ A AVDARQEIDL
Sbjct: 123 ENICFEVI---KSTGFHINDTYRARFSSVTEKDVVKALDNLVRPNRDEALAVDARQEIDL 179
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTRFQT + + + D R V+SYGPCQ PTLGF V+RY +I + E+FW+
Sbjct: 180 KVGVAFTRFQTSYFQGKYGN--LDSR--VISYGPCQTPTLGFCVQRYLQINTFKPEKFWS 235
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
++ W RG LFD A++ ++ ++ VT++ ++++ K P L+T
Sbjct: 236 LHPYIIQNGYEIQLEWQRGKLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNT 295
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ L K AS + M++AE LY GFISYPRTE+ ++ + G++ Q +P W
Sbjct: 296 VNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFRGVLSAQTNNPTW 355
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G Y Q LL + ++ P G D HPPI P + S+ E D +KLY+ + +HF+
Sbjct: 356 GNYVQGLLTNG---YQKP-RLGTDVGDHPPITPMR-SAAEDMLGNDAWKLYQYICQHFIG 410
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
VS VE +I GE F +G+ ++ K + + + + IP+++ GQ+ +
Sbjct: 411 TVSPDCKYIRRKVEFSIGGESFHCTGQHVVTKGFTAIMPWLAINDKNIPSFIKGQKIEVS 470
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L L G T PP L+E++L+S M+K GIGTDA++ HI + +R Y A + PT
Sbjct: 471 KLELYEGSTSPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTT 530
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G LV GY + +L P++RS +E + ++ G V+ + +QQ F +K
Sbjct: 531 LGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKGQVDHRHVVQHVIQQFTQKF-SYFVK 589
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
K++ ++A+ F ++S D +G ++ +CG C
Sbjct: 590 KIEDMDAL--FEAQFSTLTD---SGRILSKCGKC 618
>gi|156836960|ref|XP_001642518.1| hypothetical protein Kpol_340p7 [Vanderwaltozyma polyspora DSM
70294]
gi|156113057|gb|EDO14660.1| hypothetical protein Kpol_340p7 [Vanderwaltozyma polyspora DSM
70294]
Length = 650
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 241/643 (37%), Positives = 362/643 (56%), Gaps = 36/643 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS----IRGQPCHMLMTS 63
+ VL VAEK S+AK+V+ ILS R+ Y K Y+F ++ I + C + MTS
Sbjct: 1 MRVLCVAEKNSIAKAVSQILSGGNS-NARDSGYMYVKNYDFRFNGFPFINDRDCDVTMTS 59
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHLM +DF W C +L+ AP+ + +++K I +++EAR +L++W D
Sbjct: 60 VAGHLMGIDFPNDRYGWGKCPVHELFDAPLLQVYDKNQKKIADNIKKEARNADFLMIWTD 119
Query: 124 CDREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
CDREGE I +E+ + + N L + RA FS L I A +N + +AV+
Sbjct: 120 CDREGEYIGWEIFQEAKKGNRRLNEDQMFRANFSHLERSHILYAARNPRRLDMNSVNAVE 179
Query: 181 ARQEIDLRIGASFTRFQTMLLKN-----FHIDSVTDDR--NLVLSYGPCQFPTLGFVVER 233
R EIDLR G +FTR T +KN ++S + + N+V+SYG CQFPTLGFVV+R
Sbjct: 180 TRMEIDLRAGVTFTRLLTDTMKNKVSATIQMNSGPNAKKENVVISYGTCQFPTLGFVVDR 239
Query: 234 YWEIQAHESEEFWTINCSHKSEEGT----ATFSWMRGHLFDYTSAVIIYEMCVQEP--TA 287
Y I+ EEFW I ++++ TF W RGH+FD + + YE+C++ A
Sbjct: 240 YERIRHFIPEEFWHIQLQIENKDKNGGEFTTFQWERGHIFDRLTVLTFYEVCLELAGNQA 299
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDS 347
V ++ + KY P PL+T+EL+K +R+ R++++ ++ AE LYQ GFISYPRTETD
Sbjct: 300 KVIDLKSKPTSKYRPLPLTTVELQKNCARFLRLNAKQSLDAAEKLYQKGFISYPRTETDI 359
Query: 348 FSSGTNLHGIVQEQIG------HPDWGPYAQRLLDHAAGL--WRNPGSGGHDDKAHPPIH 399
F NL +V++Q W YA++L+ A G ++ P SG HDDKAHPPIH
Sbjct: 360 FPQTMNLKSLVEKQAQLDQGNHRSPWAAYAEQLISDAPGTNKFKFPRSGTHDDKAHPPIH 419
Query: 400 P-TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
P + + + +YE VVRHFLAC S+ A G T + ++ AGE F+ SG V+L
Sbjct: 420 PIISLGAKATNITPVERSVYEYVVRHFLACCSEDAKGLSTTLTLDWAGEKFTASGLVVLE 479
Query: 459 KNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
+N+LDVY + W +P + + SG T PP ++E++L+S MD GIG
Sbjct: 480 RNFLDVYPWAKWESTKQLPRLEMNEICTIGKAEMKSGKTSPPKPMTESELISLMDVNGIG 539
Query: 518 TDATMHDHIKKLLDRFYAIKDAN---TRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMM 572
TDAT+ +HI+K+ R Y + + T PT +G ALV G++++G E KP R M
Sbjct: 540 TDATIAEHIEKIQVRKYIKSEKSGKETYLQPTTLGIALVHGFEEIGLEDSFAKPFQRREM 599
Query: 573 ESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAM 615
E ++K++ GN++K +V+ + +++ K ++ K LLE
Sbjct: 600 EEELKKICEGNRTKNEVVVDIVEKYKKYWIKTNGSKNTLLEVF 642
>gi|343420183|emb|CCD19182.1| DNA topoisomerase, putative [Trypanosoma vivax Y486]
Length = 803
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 230/553 (41%), Positives = 317/553 (57%), Gaps = 26/553 (4%)
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
M+ TSV GHL DF + + W S P DL+ + KHV + + +K+ LE R+ L
Sbjct: 1 MVCTSVAGHLTNDDFPAQTKNWSSFPPLDLFTVGITKHVKPELEQVKRNLESLGRQSTTL 60
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA 178
LW+DCDREGENI FEV+ V + VN + + RA F L ++ AV NL + +DA
Sbjct: 61 ALWMDCDREGENICFEVMSVVQTVNRQIEVCRAHFPTLTRGDLFTAVHNLKTLKKALSDA 120
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
V+ARQEIDLRIGA F+RFQT+ ++ D VL++GPCQ PTLGFVV R W+ +
Sbjct: 121 VEARQEIDLRIGAVFSRFQTIKFRDMF-----RDMPRVLNFGPCQIPTLGFVVRRSWDQR 175
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-----PTATVTKVR 293
EE++T+ H+ FS G ++D +A ++ E +QE P A VT+
Sbjct: 176 GFVPEEYFTLALHHRQ----TVFSSCPGSMYDQIAATLVLE-AIQESASEKPEAEVTEGV 230
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMK-VAEDLYQAGFISYPRTETDSFSSGT 352
Q+ ++PP L+T+ L+K A+ + R+SSE M LYQ G++SYPRTETDSFS
Sbjct: 231 QRPNRRHPPVQLATVVLQKLAATHLRISSEKCMMWGGVSLYQEGYVSYPRTETDSFSLTD 290
Query: 353 N-LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF--SSGESR 409
N L Q G+ + G Y +L +R P GGHDDKAH PI+PTK SS + R
Sbjct: 291 NELLETAGLQSGNSEVGQYVSAMLGDRQNRFRRPLRGGHDDKAHLPIYPTKLMPSSNDPR 350
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFES 469
LY L+VRHFLACVS AV A T V E F+TSG +L + +L+VY +E
Sbjct: 351 M-----PLYNLIVRHFLACVSPDAVAATTSVTAVFGEEKFTTSGTAVLERGWLEVYPYER 405
Query: 470 WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKL 529
W IP Y G++F PT + L+ T PP +EA+L++ MDK GIGTDAT+ HIK +
Sbjct: 406 WHSTCIPAYKRGERFTPTAVNLERHRTTPPSNPTEANLIALMDKHGIGTDATIAQHIKTV 465
Query: 530 LDRFYAIKDANTRFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKAD 588
LDR Y +K T PT +G AL Y+ +G L +P LR+ ME M +++ G +K +
Sbjct: 466 LDREY-VKREGTSLVPTTLGNALASAYEAVGLVSLLQPQLRAQMELAMADIATGKATKEE 524
Query: 589 VLANCLQQMKACF 601
V+ + + F
Sbjct: 525 VVGAAVHLYREIF 537
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C ++M L++S++G + + C +P C +V LP + V C SC+
Sbjct: 691 IAQCRSCMGNDMPLRQSQNG-VFLSCRGYPSCTFSVNLPRAKRIRPVPEGRCASCS---A 746
Query: 695 YLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICG 733
L+QF+F + PG C+ CD L++ + + G
Sbjct: 747 LLLQFEFGGMQTVPGVMEGEHMCV-FCDVLLQEYVTVKG 784
>gi|359478029|ref|XP_002264970.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Vitis vinifera]
Length = 894
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 239/640 (37%), Positives = 358/640 (55%), Gaps = 27/640 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
++L VAEKPS+A S+A LS R G S +++EFN + RG +TSV GH
Sbjct: 30 FDILQVAEKPSIALSIASALSGGHMSTRRGGSS--TEVHEFNGTFRGSNAQYKVTSVIGH 87
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +DF +Y+ W DP DL+ AP+ K K I++ L +EAR C LVLWLDCDRE
Sbjct: 88 VFSVDFPAKYQDWTVTDPLDLFQAPILKAESNPKAHIRRHLSQEARDCGHLVLWLDCDRE 147
Query: 128 GENIAFEVIEVCRAVNCHLVLRR---ARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
GENI FEV+E C + + RR ARFS++ +++I +A+ NLV+PN+ A AVDARQE
Sbjct: 148 GENICFEVVE-CTGFHGNEARRRVYRARFSSVTEKDILKAMDNLVEPNEDEARAVDARQE 206
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
IDL++G +FTRFQT + + + D R V+SYGPCQ PTLGF V+RY +I + E+
Sbjct: 207 IDLKVGVAFTRFQTSYFQGKYGN--LDSR--VISYGPCQTPTLGFCVQRYLQINTFKPEK 262
Query: 245 FWTIN--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
FW ++ +H E W R LFD AV+ + +++ VT + ++++ K P
Sbjct: 263 FWALHPYITHNGYE--LQLEWERNKLFDLDVAVMFQNLVMEDGIVEVTDISEKQESKSRP 320
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+ L K AS + M++AE LY GFISYPRTE+ ++ S + + Q
Sbjct: 321 SGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKSTLGMQT 380
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+P WG Y Q+LLD + P SG D HPPI P + ++ E D +KLY+ V
Sbjct: 381 NNPTWGDYVQKLLDDG---FHRPRSGT-DAGDHPPITPMR-AANEDMLGNDAWKLYQYVC 435
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
+HF+ VS VE +I GE+F G+ ++ K + + + + +P + G+
Sbjct: 436 QHFIGTVSPDCKYVRNKVEFSIGGEIFRCIGQHVIVKGFTSIMPWLAVNEKNLPQFKKGE 495
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + L G T PP LSE++L+S M+K GIGTDA++ HI + +R + A +
Sbjct: 496 KIEVSKVELYEGETSPPDYLSESELISLMEKNGIGTDASIPVHINNICERNFVQVQAGRK 555
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G +L+ GY + +L P++RS +E + V+ G + V+ + LQQ K F
Sbjct: 556 LVPTALGISLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQVDHSRVVEHVLQQFKQKF- 614
Query: 603 DARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
+ VK +E M FE ++S D +G + +CG C
Sbjct: 615 ---IYFVKQIENMDALFEAQFSPLAD---SGRALSKCGKC 648
>gi|296089603|emb|CBI39422.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 239/640 (37%), Positives = 358/640 (55%), Gaps = 27/640 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
++L VAEKPS+A S+A LS R G S +++EFN + RG +TSV GH
Sbjct: 46 FDILQVAEKPSIALSIASALSGGHMSTRRGGSS--TEVHEFNGTFRGSNAQYKVTSVIGH 103
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +DF +Y+ W DP DL+ AP+ K K I++ L +EAR C LVLWLDCDRE
Sbjct: 104 VFSVDFPAKYQDWTVTDPLDLFQAPILKAESNPKAHIRRHLSQEARDCGHLVLWLDCDRE 163
Query: 128 GENIAFEVIEVCRAVNCHLVLRR---ARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
GENI FEV+E C + + RR ARFS++ +++I +A+ NLV+PN+ A AVDARQE
Sbjct: 164 GENICFEVVE-CTGFHGNEARRRVYRARFSSVTEKDILKAMDNLVEPNEDEARAVDARQE 222
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
IDL++G +FTRFQT + + + D R V+SYGPCQ PTLGF V+RY +I + E+
Sbjct: 223 IDLKVGVAFTRFQTSYFQGKYGN--LDSR--VISYGPCQTPTLGFCVQRYLQINTFKPEK 278
Query: 245 FWTIN--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
FW ++ +H E W R LFD AV+ + +++ VT + ++++ K P
Sbjct: 279 FWALHPYITHNGYE--LQLEWERNKLFDLDVAVMFQNLVMEDGIVEVTDISEKQESKSRP 336
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+ L K AS + M++AE LY GFISYPRTE+ ++ S + + Q
Sbjct: 337 SGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKSTLGMQT 396
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+P WG Y Q+LLD + P SG D HPPI P + ++ E D +KLY+ V
Sbjct: 397 NNPTWGDYVQKLLDDG---FHRPRSGT-DAGDHPPITPMR-AANEDMLGNDAWKLYQYVC 451
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
+HF+ VS VE +I GE+F G+ ++ K + + + + +P + G+
Sbjct: 452 QHFIGTVSPDCKYVRNKVEFSIGGEIFRCIGQHVIVKGFTSIMPWLAVNEKNLPQFKKGE 511
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + L G T PP LSE++L+S M+K GIGTDA++ HI + +R + A +
Sbjct: 512 KIEVSKVELYEGETSPPDYLSESELISLMEKNGIGTDASIPVHINNICERNFVQVQAGRK 571
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G +L+ GY + +L P++RS +E + V+ G + V+ + LQQ K F
Sbjct: 572 LVPTALGISLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQVDHSRVVEHVLQQFKQKF- 630
Query: 603 DARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
+ VK +E M FE ++S D +G + +CG C
Sbjct: 631 ---IYFVKQIENMDALFEAQFSPLAD---SGRALSKCGKC 664
>gi|148706738|gb|EDL38685.1| topoisomerase (DNA) III alpha [Mus musculus]
Length = 698
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/480 (43%), Positives = 294/480 (61%), Gaps = 22/480 (4%)
Query: 284 EPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRT 343
+P ATV +VR + K K+ P L T+ELEK ASR R++++ TM++AE LY G+ISYPRT
Sbjct: 1 DPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRT 60
Query: 344 ETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF 403
ET+ F NL +V++Q P WG +AQ +L+ RN G D+AHPPIHPTK+
Sbjct: 61 ETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRN---GSKSDQAHPPIHPTKY 117
Query: 404 SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLD 463
+SG D +LYE +VRHFLAC SQ A G ET VEI+IA E F G +ILA+NYLD
Sbjct: 118 TSG---LQGDDRRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLIILARNYLD 174
Query: 464 VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
VY ++ W ++P Y G F P+T+ + G T PP LL+EADL++ M+K GIGTDAT
Sbjct: 175 VYPYDHWSDKLLPVYEQGSHFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHA 234
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
+HI+ + R Y ++ RF P ++G LV GYD MGYE+ KP+LR+ +E+D+K + G
Sbjct: 235 EHIETIKARMYVGLTSDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGK 294
Query: 584 KSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCG 639
K K VL +Q+ K F++A K KL EA+ + ER + ++ A E VR+C
Sbjct: 295 KDKFQVLRQQVQKYKQVFIEAVAKAKKLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCP 354
Query: 640 ICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQF 699
C + +MVLK + G + C+ FP+CR+AVW P SV EA+ + C+ C P PVY ++
Sbjct: 355 QCNK-DMVLKTKKSGGFYLSCMGFPECRSAVWFPDSVLEASRDNSVCSVCQPPPVYRLKL 413
Query: 700 KFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
KF++ +PP + +GCIGGCDETL+++ + R P A Q S H Q
Sbjct: 414 KFKRGSLPPAMPLEFVGCIGGCDETLKEIFGL-----------RFPRALPRASQPSGHLQ 462
>gi|302497864|ref|XP_003010931.1| hypothetical protein ARB_02829 [Arthroderma benhamiae CBS 112371]
gi|291174477|gb|EFE30291.1| hypothetical protein ARB_02829 [Arthroderma benhamiae CBS 112371]
Length = 563
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 227/568 (39%), Positives = 305/568 (53%), Gaps = 71/568 (12%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV GHL+ +F+ RY+ W SCDP+ L+ AP+ V D + + ++ ARR L +
Sbjct: 1 MTSVLGHLLSHEFEPRYKSWTSCDPSALFDAPIEVFVSSDSQPVADNIKRHARRADVLFI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFA 176
W DCDREGE+I E+ V N L RARFS + I A V+ ++ A
Sbjct: 61 WTDCDREGEHIGTEIRSVAAQSNQALGRAGGTVRARFSNIERTHIIHAAHRPVNLDEAQA 120
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
DAV +R E+DLR+GASFTR T+ L+ + + ++SYG CQFPTLGFVVERYW
Sbjct: 121 DAVASRIELDLRVGASFTRHLTLSLRPILQRGNLSEASQLISYGSCQFPTLGFVVERYWR 180
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
++ E FW+I H+ FSW R HLFD +AVI+YE C+ A V KV+
Sbjct: 181 VRNFIPEPFWSIKLMHQKAGTWVNFSWARNHLFDRRTAVILYERCLASQNAQVQKVKTSP 240
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K+ P PL+T+EL+K SR+ M S+ +++AE LYQ G+ISYPRTETD F G +L G
Sbjct: 241 ASKWKPLPLTTLELQKCGSRFLGMDSQKVLQLAEKLYQKGWISYPRTETDQFDQGMDLRG 300
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
+VQ+Q W YA L+ G + P +G ++DKAHPPIHP FS +
Sbjct: 301 LVQKQTQGGRWADYATALV---GGGFSWPHNGHNNDKAHPPIHPVNFSK---------QR 348
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
++E VVR FLAC S+ A G++T + + E F SG VIL +NYLDVY ++ W +P
Sbjct: 349 VHEFVVRRFLACCSKDAQGSKTDISVLYGPETFHASGLVILERNYLDVYIYDRWSNQELP 408
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
++ G+ F PT L G T P L+E DLL+ M+ GIGTDATM DHI ++DR Y
Sbjct: 409 PFIEGEVFEPTEAMLSEGKTSSPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVE 468
Query: 537 KDANTR-----------------------------------------------------F 543
A R F
Sbjct: 469 ARAQPRQARHGNDEEEESEELPAQARGGNGRRGRTAIASRRGGRNSGAGRGSTITGVREF 528
Query: 544 APTNIGEALVMGYDDMGYE--LWKPNLR 569
PT +G ALV G+++MG+E L KP LR
Sbjct: 529 IPTTLGVALVEGHENMGFETDLMKPFLR 556
>gi|380486032|emb|CCF38971.1| DNA topoisomerase, partial [Colletotrichum higginsianum]
Length = 462
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/465 (45%), Positives = 284/465 (61%), Gaps = 11/465 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEKPS++K+VAG L+ + + R +Y K Y F++ PC + MT+V
Sbjct: 1 MKVLCVAEKPSISKAVAGHLA-GRNPEVHNTRLQYIKNYGFDFDFGAPWGPCSVTMTAVV 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL LDF + W P L+ APV VP+DKK + + +E +AR CQ L++W DCD
Sbjct: 60 GHLTGLDFTPENKNWSHPPPESLFTAPVVTFVPQDKKTVAENIERQARYCQLLIIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E++ R N + ++RA FS + I A + L D +Q DAVDAR E+
Sbjct: 120 REGEHIGKEIVNAARKGNSRIAVKRATFSNIERAHILTAARRLTDLDQKQVDAVDARIEL 179
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T L+ + +R +SYG CQFPTLGFVV+RY+ +Q E+F
Sbjct: 180 DLRIGYAFTRFLTNSLRP--LGGPLQER--TISYGSCQFPTLGFVVDRYFRVQNFVPEQF 235
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W+I H E F+W R LFD S +I+YE C++ ATVTKV+++ K+ P PL
Sbjct: 236 WSIKVMHSREGKKVNFNWSRNRLFDRMSVIILYERCIRANKATVTKVQEKPTRKWKPLPL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL+K A+R RMS + M VAE LY GFISYPRTETD F G +L +V++Q
Sbjct: 296 TTVELQKAATRLLRMSGQQAMTVAEGLYNKGFISYPRTETDRFDKGIDLKALVRKQTPDN 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG YAQ LLD G ++ P G HDDKAHPPIHP +++ + + D +LYE VVR F
Sbjct: 356 RWGEYAQGLLD---GNFQQPREGKHDDKAHPPIHPVTYAA-PTVLNADERQLYEYVVRRF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW 470
LAC S+ A G T VEI E F G V+L +NYLDV+ +E W
Sbjct: 412 LACCSEDAKGLATDVEILYGEETFHARGLVVLERNYLDVFVYEKW 456
>gi|50556688|ref|XP_505752.1| YALI0F22495p [Yarrowia lipolytica]
gi|49651622|emb|CAG78563.1| YALI0F22495p [Yarrowia lipolytica CLIB122]
Length = 620
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/625 (38%), Positives = 349/625 (55%), Gaps = 27/625 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTG 66
+ VL VAEKPSVAK+V IL G R +++ K Y+F Y G C MTSV G
Sbjct: 1 MKVLCVAEKPSVAKAVCNILGG--GFTTRHTANKFVKNYDFQYDFPGWGRCDCTMTSVLG 58
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL + +F + + A L+ P+ V D + + +EAR + L++W DCDR
Sbjct: 59 HLTDSEFVSEDARKFGYNAARLFTEPITTQVKADMRKCADNIVKEARHARKLLIWTDCDR 118
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE I +E+++ N ++ ++RA FS L +HQA ++L + + +AV AR EID
Sbjct: 119 EGEYIGWEIVQEAIKGNPNIEVKRAIFSDLEKTHVHQAARSLRELDMNAVNAVAARMEID 178
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
R G +FTR QT+ ++ V+SYG CQFPTLGF+V+RY + E FW
Sbjct: 179 YRTGFAFTRLQTLHIQR----KFAQLSKSVISYGSCQFPTLGFIVDRYLARENFVPEPFW 234
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIY-EMCVQEPTATVTKVRQQEKLKYPPYPL 305
+ K + RGH+FD SAV +Y +C VT + + KY P PL
Sbjct: 235 YMTLKCKVGRKQMALTSKRGHIFDRASAVALYARVCESGVLPKVTNLSSRPTSKYRPLPL 294
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL K S+ ++ S+ +K+AE+LYQ FISYPRTETD FS+ +L ++ +Q P
Sbjct: 295 TTVELLKLGSKSLKLPSKTVLKLAEELYQQSFISYPRTETDQFSNDIDLMPLLAKQKNSP 354
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG YA L+D A + P G H+DKAHPPIHP + S DH ++YEL+ RHF
Sbjct: 355 TWGDYASTLVDGDA--FSPPRWGRHNDKAHPPIHPIAHCANFK--SNDHKRVYELIARHF 410
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQF 484
+AC S+ A G ++ V+++ GE FS +G VIL N+LD+Y + W G +P + +
Sbjct: 411 MACCSKDAKGQQSNVDVDWYGEQFSATGLVILETNFLDIYPYVKWTGSGELPAGLEVGKE 470
Query: 485 IPTTLT-LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANTR 542
+P + L G T PP LL+E +LLS MD GIGTDATM +HI +++R Y ++ +A R
Sbjct: 471 LPIVESMLAEGTTTPPSLLTEPELLSLMDMNGIGTDATMAEHISTVVNREYILRCNAQGR 530
Query: 543 ----------FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVL 590
F P+ +G+ALV GYD +G + L KP +R +ES + +V+ G SK V+
Sbjct: 531 PVQGRAKAEYFTPSPLGQALVEGYDSIGLDRSLTKPFIRRDLESQLGQVAKGEASKDAVV 590
Query: 591 ANCLQQMKACFLDARLKKVKLLEAM 615
+ L K F + + VKL A+
Sbjct: 591 ESALIAFKDMFDLTKTEIVKLERAI 615
>gi|384486567|gb|EIE78747.1| DNA topoisomerase [Rhizopus delemar RA 99-880]
Length = 480
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/475 (44%), Positives = 292/475 (61%), Gaps = 19/475 (4%)
Query: 104 IKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQ 163
I ++ E R L +W DCDREGE I +V ++C++V ++ + RA+FS++ IH+
Sbjct: 4 IANNIKSEVRSADVLFIWTDCDREGEAIGGDVKDLCQSVKPNIQIWRAQFSSMQPAAIHR 63
Query: 164 AVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQ 223
A +N V+ + AV+ RQE+DLRIGA+FTR QT L++F + +LSYG CQ
Sbjct: 64 AARNHVELDMKQVYAVNTRQELDLRIGAAFTRLQTKNLRSFFEQF---GKKKMLSYGSCQ 120
Query: 224 FPTLGFVVERYWEIQAHESEEFWTINCSHK-------SEEGTATFSWMRGHLFDYTSAVI 276
FPTLGFVV+RY +++ EEFW I ++ + T F+W R HLFD + I
Sbjct: 121 FPTLGFVVDRYQQVKNFIPEEFWKITMTYSQSNVQPGEQRLTTEFNWKREHLFDQWACFI 180
Query: 277 IYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG 336
+YE CV++ ATVTKV+ ++ K+ P PL+T+EL+K R MS M++AE+LY AG
Sbjct: 181 LYEKCVEKRVATVTKVKSKQTSKWKPLPLTTVELQKVGCRALHMSGSRIMQIAEELYTAG 240
Query: 337 FISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHP 396
ISYPRTETD F S + ++ +Q P WG YA L D G + P +G ++DKAHP
Sbjct: 241 LISYPRTETDQFDSNFDFMSLINQQTNDPRWGQYATLLRD---GEFERPRNGKNNDKAHP 297
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
PIHPT + + S + K+YE + R FL + AVG ET VE I E F G VI
Sbjct: 298 PIHPTSY---DRNLSGEKLKVYEFIARRFLGACWKNAVGYETSVEAKIDEEYFDAKGLVI 354
Query: 457 LAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
L +NYL+VY ++ W G VIP + G +FIP TL + SG T PP LL+E DL+ M+K I
Sbjct: 355 LERNYLEVYIYDKWTGNVIPEFQEGHEFIPETLEMKSGKTSPPKLLTETDLIGLMEKNEI 414
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYE--LWKPNLR 569
GTDAT+ +HI+K+LDR Y K+ F P +G ALV+GY+++G E L KP LR
Sbjct: 415 GTDATIAEHIQKILDREYVYKEGQF-FKPLTLGIALVLGYNEIGLESSLNKPYLR 468
>gi|410082299|ref|XP_003958728.1| hypothetical protein KAFR_0H01830 [Kazachstania africana CBS 2517]
gi|372465317|emb|CCF59593.1| hypothetical protein KAFR_0H01830 [Kazachstania africana CBS 2517]
Length = 656
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 239/647 (36%), Positives = 355/647 (54%), Gaps = 42/647 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNY---SIRGQPCHMLMTSV 64
+ VL VAEK S+AKSV+ IL + G + Y K Y+FN+ + C + MTSV
Sbjct: 1 MKVLCVAEKNSIAKSVSQILGGGRSTSRASGYT-YVKNYDFNFYGFPFANRECQVTMTSV 59
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL LDFD W C+ +L+ AP+ + + ++++ I + ++ EAR +L++W DC
Sbjct: 60 AGHLSSLDFDNSQYGWGKCNIFELFDAPLSELMDKNQQKIAENIKREARNADYLMIWTDC 119
Query: 125 DREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DREGE I +EV + + N L ++ RA FS L I A +N + AV
Sbjct: 120 DREGEYIGWEVFQAAQKGNRRLTDGLVYRAIFSHLERSHILNAAKNPGKLDMRSVSAVGT 179
Query: 182 RQEIDLRIGASFTRF--QTMLLKNFHIDSVTDDRN------------LVLSYGPCQFPTL 227
R E+DLR G SFTR TM K +++++DR+ +++SYGPCQFPTL
Sbjct: 180 RIELDLRTGVSFTRLLTGTMGKKVQEANNISNDRSNGNSRAGNKNEKVIISYGPCQFPTL 239
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEG--TATFSWMRGHLFDYTSAVIIYEMCVQEP 285
GFVV+RY I+ EEFW I E + TF W RGHLFD S + +YE ++
Sbjct: 240 GFVVDRYERIKHFTPEEFWYIQLQLNDEANGLSTTFQWDRGHLFDRLSVLALYENSLEFA 299
Query: 286 --TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRT 343
A V ++ + KY P PL+T+EL+K +RY R++++ ++ AE LYQ GF+SYPRT
Sbjct: 300 GNKAKVIDLQSKPTSKYRPLPLTTVELQKNCARYLRLNAKQSLAAAEKLYQKGFLSYPRT 359
Query: 344 ETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLLDH---AAGLWRNPGSGGHDD 392
ETD F + +L +V++Q W YA L+ ++ P SG HDD
Sbjct: 360 ETDIFPATMDLRSLVEKQAQLDESTNSNKTAWASYAANLISENPETNNRFKFPRSGSHDD 419
Query: 393 KAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTS 452
KAHPPIHP + ++ ++YE V RHFLAC S+ A G + + ++ A E F+ S
Sbjct: 420 KAHPPIHPITSLAPNAQIDSIERRVYEYVARHFLACCSEDAKGQTSTLTLDWAEEKFTAS 479
Query: 453 GRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
G V+L +N+LDVY + W +P Q+ + + SG T PP ++E++L+ M
Sbjct: 480 GLVVLERNFLDVYPWAKWETTKQLPRLEINQECEISKAEMRSGSTSPPKPMTESELIMLM 539
Query: 512 DKAGIGTDATMHDHIKKLLDRFYAIKDAN---TRFAPTNIGEALVMGYDDMGYE--LWKP 566
D GIGTDAT+ +HI+K+ R Y + + T PT +G ALV G++ +G E KP
Sbjct: 540 DANGIGTDATIAEHIEKIKARNYIRSEKSGKETNLHPTVLGIALVHGFEAIGLEDSFAKP 599
Query: 567 NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
R ME D+K++ G +K +VLA+ +++ + + K LLE
Sbjct: 600 FQRREMEEDLKKICQGELTKREVLADIIEKYRGYWTKTNQSKNTLLE 646
>gi|42569543|ref|NP_180760.2| DNA topoisomerase III [Arabidopsis thaliana]
gi|330253525|gb|AEC08619.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 865
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/637 (36%), Positives = 359/637 (56%), Gaps = 23/637 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A S+A +LS Q + R G + +++EF+ RG H +TSV GH
Sbjct: 5 LRVLMVAEKPSIALSIASVLSHGQ-MSTRRGST---EVHEFDGMFRGFKAHYRVTSVIGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +DF E+Y+ W + DP DL+ AP+ K K I + L EAR C ++VLWLDCDRE
Sbjct: 61 VFSVDFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDRE 120
Query: 128 GENIAFEVIEVC--RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
GENI FEVIE + + RARFS++ +++I +A+ NLV+PN+ A AVDARQEI
Sbjct: 121 GENICFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEI 180
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DL++G +F+RFQT + + + D R V+SYGPCQ PTLGF V+RY I + E+F
Sbjct: 181 DLKVGVAFSRFQTSYFQGKYQN--LDCR--VISYGPCQTPTLGFCVQRYMHINTFKPEKF 236
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W + + + W R LFD +A + ++ V+ TA V V +++++K P L
Sbjct: 237 WALRPYIRKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+ L K AS + M +AE LY GFISYPRTE+ ++ S + ++ Q+ +P
Sbjct: 297 NTVNLLKVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNP 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG Y QRLL + P SG D HPPI P + ++ E D ++LY+ V +HF
Sbjct: 357 VWGGYVQRLLSDG---FHMPKSGT-DAGDHPPITPMR-AATEVMVGGDAWRLYQYVCQHF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
L VS T VE++I GE F +G+ + K + + + + +P+++ G++
Sbjct: 412 LGTVSPNCKYIRTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIE 471
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ L G T PP L+E++L+S M+K GIGTDA++ HI + +R Y + + P
Sbjct: 472 VLRVELYEGNTAPPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVP 531
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T +G L+ GY + +L P++RS +E + V+ G + V+ + +QQ + F
Sbjct: 532 TALGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQADHSHVVQHVIQQFRRKF---- 587
Query: 606 LKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
V+ +E M FE ++S D +G + +CG C
Sbjct: 588 SYFVQQIEHMDALFEAQFSPLAD---SGRALSKCGKC 621
>gi|300706240|ref|XP_002995407.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
gi|239604490|gb|EEQ81736.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
Length = 805
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 220/587 (37%), Positives = 342/587 (58%), Gaps = 31/587 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRY--NKIYEFNYSIRGQPCHMLMTSVT 65
+++LN+AEKPSVAKS++ ILS Q + GR +Y N +++N TSV
Sbjct: 1 MHILNIAEKPSVAKSISKILS--QSIVTSRGRHKYCPNITFKYNNDT------FTFTSVL 52
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ L+F ++Y W S DP L++ P+ K + ED +++K LEE++ + +++W DCD
Sbjct: 53 GHIYNLNFCKKYI-WESIDPKILFYEPLTKKIQEDFINLQKNLEEQSYKANKVIIWTDCD 111
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+IA ++ + ++ N ++ ++RARF+A+ ++ +A++NLV+ N ADAVD R E+
Sbjct: 112 REGEHIAQQIYNIIKSKN-NIEIKRARFNAISRNDVTRALENLVNININEADAVDCRMEM 170
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG+SFT QT+ LK+F V+S+GPCQ PTLGFV+ER+++I+ + E+F
Sbjct: 171 DLRIGSSFTILQTLTLKSFF------KSRHVISFGPCQIPTLGFVIERFFQIEKFKEEDF 224
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
+++ + KS+ T++W RG++FD Y M + + K K P PL
Sbjct: 225 YSLEINIKSD----TWTWKRGNIFDKNCVTYFYNMLINYNLLIIKK-EVSSVFKMKPLPL 279
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+EL+K S F++SS M++AE LY G+ISYPRTETD+F N I+ + I
Sbjct: 280 RTVELQKLCSSIFKISSHKIMEIAESLYNKGYISYPRTETDAFPKNFNYKNILDKIISD- 338
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
Y +L + P SG ++D AH PI+P K G + KLY+ + R F
Sbjct: 339 --STYTDIILSIKNNI-NLPRSGKNNDMAHSPIYPLK---GGGDLTGLDRKLYDFITRRF 392
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
L + A G ET E+ I E+F G I +NYLDVY F+ W I Y ++
Sbjct: 393 LGSLCADAKGLETYYELLINKEIFYIKGLKITERNYLDVYTFDKWNNKEIQDYELNKEIK 452
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
++ + +G T PP L+E++L++ MDK GIGTDAT+H+HI+K+ +R Y K N P
Sbjct: 453 EFSIEIKNGRTTPPYFLTESELITLMDKNGIGTDATIHEHIQKIQERGYVYKFKNY-IIP 511
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
+G L+ G+ + E+ KP LR +E ++K++ +G +K V+ N
Sbjct: 512 KKLGIGLIKGFIHLNMEVNKPFLRRDLEINLKKICLGEINKKSVIDN 558
>gi|297826655|ref|XP_002881210.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297327049|gb|EFH57469.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/635 (37%), Positives = 357/635 (56%), Gaps = 23/635 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A S+A +LS Q + R G + +++EF+ RG H +TSV GH+
Sbjct: 7 VLMVAEKPSIALSIASVLSHGQ-MSTRRGST---EVHEFDGMFRGFKAHYRVTSVIGHVF 62
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF E+Y+ W + DP DL+ AP+ K K I + L EAR C ++VLWLDCDREGE
Sbjct: 63 SVDFPEKYQNWATIDPQDLFDAPILKKESNPKAHICRHLSNEARGCSYMVLWLDCDREGE 122
Query: 130 NIAFEVIEVC--RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
NI FEVIE + + RARFS++ +++I +A+ NLV+PN+ A AVDARQEIDL
Sbjct: 123 NICFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDL 182
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +F+RFQT + + + D R V+SYGPCQ PTLGF V+RY I + E+FW
Sbjct: 183 KVGVAFSRFQTSYFQGKYQN--LDCR--VISYGPCQTPTLGFCVQRYMHINTFKPEKFWA 238
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+ + W R LFD +A + ++ V+ TA V V +++++K P L+T
Sbjct: 239 LRPYIIKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNT 298
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ L K AS + M +AE LY GFISYPRTE+ ++ S + ++ Q+ +P W
Sbjct: 299 VSLLKVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNPVW 358
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G Y QRLL + P SG D HPPI P + ++ E D ++LY+ V +HF+
Sbjct: 359 GGYVQRLLSDG---FHKPKSGT-DAGDHPPITPMR-AATEVMVGGDAWRLYQYVCQHFIG 413
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
VS T VE++I GE F +G+ + K + + + + +P+++ G++
Sbjct: 414 TVSPNCKYIRTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVI 473
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+ L G T PP L+E++L+S M+K GIGTDA++ HI + +R Y A + PT
Sbjct: 474 RVELYEGNTAPPDYLTESELISLMEKHGIGTDASIPVHINNIGERNYVQVQAGRKLVPTA 533
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G L+ GY + +L P++RS +E + V+ G + V+ + +QQ + F
Sbjct: 534 LGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQADHSHVVQHVIQQFRRKF----SY 589
Query: 608 KVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
V+ +E M FE ++S D +G + +CG C
Sbjct: 590 FVQQIEHMDALFEAQFSPLAD---SGRALSKCGKC 621
>gi|241721971|ref|XP_002404156.1| topoisomerase I, putative [Ixodes scapularis]
gi|215505336|gb|EEC14830.1| topoisomerase I, putative [Ixodes scapularis]
Length = 857
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/648 (36%), Positives = 347/648 (53%), Gaps = 38/648 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+VL VAEKP++A+S+A ILS N ++ R+G S +YE+ + +P MTSV GH+
Sbjct: 3 SVLMVAEKPALAQSLAAILS-NGTMKSRKGISSACTVYEYMGKFKNEPARFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M DF +Y W DPA+L+ AP K K + + LE+E + C +LVLWLDCD+EG
Sbjct: 62 MTTDFTGKYNSWDRVDPAELFSAPTEKKEANPKLQLPRFLEKEGQGCDYLVLWLDCDKEG 121
Query: 129 ENIAFEVIEVCR------AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
ENI FEVI + + A + RA+FSA+ D++I A+ LV+PN+ A +VDAR
Sbjct: 122 ENICFEVINIVKPVLKRPATYGQQFIFRAKFSAITDKDIKAAMNMLVEPNENEARSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
QE+DLRIG +FTRFQT K ++DS +S+GPCQ PTLGF V+R+ +IQ+
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGNLDSS------FISFGPCQTPTLGFCVDRHDKIQSF 235
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+ E +W + S E T T W RG +FD A++ A +T V Q+EK K
Sbjct: 236 KPEAYWVLQVK-VSNEQTFTLDWERGRIFDREVAMVFLTQISNCKEALITDVTQKEKSKP 294
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P L+T+EL + AS M H M+VAE LY G+ISYPRTET S+ +L G + +
Sbjct: 295 RPVALNTVELMRIASSGLGMGPHHAMQVAERLYIQGYISYPRTETTSYPENFDLRGTLHQ 354
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
PD Q LL N GHD HPPI PTK +S D ++LY+
Sbjct: 355 IQRVPDLSADVQELLSKGI----NRPKKGHDAGDHPPITPTKDAS-RGELDGDAWRLYDY 409
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV----IP 476
+ RHF+A +S+ + + E FS +G+ ++ + +F SW + +P
Sbjct: 410 IARHFVATLSEDMKFLQATASFTVGEERFSLTGKSVINPGFT---KFMSWHAVTPEEALP 466
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
G + L T PP L+E++L+S MDK GIGTDA++ HI + R Y
Sbjct: 467 QLKAGTTCPVVQMKLSEQKTSPPGYLTESELISLMDKHGIGTDASIPVHINNVCQRNYVT 526
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ- 595
D+ R PTN+G LV GY + +L P +R+ +E + ++VG VL++ L
Sbjct: 527 VDSGRRLIPTNLGIVLVHGYQKIDTDLILPTMRAAVEQQLNLIAVGKADYDAVLSHTLTV 586
Query: 596 -QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
Q+K C+ + +++ E + F S +G + +CG C+
Sbjct: 587 FQLKFCYFVTSI--LQMDELFEVTFTPLS------ESGRPLSRCGKCR 626
>gi|366991737|ref|XP_003675634.1| hypothetical protein NCAS_0C02780 [Naumovozyma castellii CBS 4309]
gi|342301499|emb|CCC69268.1| hypothetical protein NCAS_0C02780 [Naumovozyma castellii CBS 4309]
Length = 663
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 244/656 (37%), Positives = 355/656 (54%), Gaps = 49/656 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI----RGQPCHMLMTS 63
+ VL VAEK S+AKSV+ IL + IR+ Y K Y+F YS GQ C + MTS
Sbjct: 1 MKVLCVAEKNSIAKSVSQILGGGRST-IRDSTYTYVKNYDFQYSGFPFGNGQDCQVTMTS 59
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHL +DF W C +L+ AP+ + ++K I +++EAR +L++W D
Sbjct: 60 VAGHLTSVDFRGDIYGWGKCPIYELFDAPLSTEMDSNQKKIASNIQKEARNADFLMIWTD 119
Query: 124 CDREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
CDREGE I +E+++ N L + RA FS L R I A + + AV
Sbjct: 120 CDREGEYIGWEILQEAERGNRRLNEQQVYRANFSHLERRHILDAARRPQRLDMKSVSAVR 179
Query: 181 ARQEIDLRIGASFTRFQTMLLKN------FHIDSVT---------------DDRNLVLSY 219
R E+DLR G +FTR T +K +++ + D +++SY
Sbjct: 180 TRMELDLRTGVTFTRLLTDTMKQKVEASRLQVNNNSNNNNIQNNQNHHKKKKDSPVIVSY 239
Query: 220 GPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEE--GTATFSWMRGHLFDYTSAVII 277
G CQFPTLGFVV+R+ I+ SEEFW I K+ + + TF W RGHLFD S +
Sbjct: 240 GACQFPTLGFVVDRFERIENFVSEEFWYIQLQIKNADTGDSTTFQWDRGHLFDRLSVLTF 299
Query: 278 YEMCVQEP--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA 335
YE C++ A V ++ + KY P PL+T+EL++ +R+ RM+++ ++ AE LYQ
Sbjct: 300 YESCIETAGDKAKVVDLKSKPTSKYRPLPLTTVELQRNCARFLRMNAKKSLAAAEKLYQK 359
Query: 336 GFISYPRTETDSFSSGTNLHGIV--QEQIGHPD-----WGPYAQRLLDHAA---GLWRNP 385
GF+SYPRTETD+F +L +V Q Q+ P W YA+ L+ ++ +R P
Sbjct: 360 GFVSYPRTETDTFPQNMDLKSLVEKQAQLDQPGNNKTAWASYAESLISESSSSNNKFRFP 419
Query: 386 GSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
SG HDDKAHPPIHP SG + + D ++YE +VRHFLAC S+ A G T + ++ A
Sbjct: 420 RSGSHDDKAHPPIHPIVPVSGNANLNIDEKRVYEYIVRHFLACCSEDAKGQSTTLILDWA 479
Query: 446 GEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSE 504
GE FS SG ++L +N+LDVY + W +P ++ + + SG T PP ++E
Sbjct: 480 GEKFSASGLIVLERNFLDVYPWAKWETTKRLPRLEMNEECEISKADMLSGNTSPPKPMTE 539
Query: 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGY 561
++L+ MD GIGTDAT+ DHI K+ R Y + T PT +G ALV G++ +G
Sbjct: 540 SELIMLMDANGIGTDATIADHIDKIQVRQYIRSEKVGKETFLQPTILGVALVHGFETIGL 599
Query: 562 E--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAM 615
E KP R ME D+K++ G SK +V+ + + + + + K LLE
Sbjct: 600 EDSFAKPFQRREMEEDLKKICEGRLSKEEVIVDIVGKYRDYWQRTNSAKNTLLEVF 655
>gi|354481406|ref|XP_003502892.1| PREDICTED: DNA topoisomerase 3-beta-1 [Cricetulus griseus]
gi|344253468|gb|EGW09572.1| DNA topoisomerase 3-beta-1 [Cricetulus griseus]
Length = 862
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/642 (37%), Positives = 353/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-NMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV--NCH---LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ + V N H + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVQPVMNNAHSGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +S
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKS 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + H ++E + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVHNNKEESLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKTKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADSVKQLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ SG+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPEHFTCSGKTVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYHQVLGHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|254579749|ref|XP_002495860.1| ZYRO0C04642p [Zygosaccharomyces rouxii]
gi|238938751|emb|CAR26927.1| ZYRO0C04642p [Zygosaccharomyces rouxii]
Length = 650
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 234/644 (36%), Positives = 352/644 (54%), Gaps = 42/644 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-------CHML 60
+ VL VAEK S+AK+V+ L G S Y + +++S G P C +
Sbjct: 1 MKVLCVAEKNSIAKAVSQTLG---GGNCNARDSGYMYVKNYDFSFDGFPFAQGTGSCQVT 57
Query: 61 MTSVTGHLMELDF-DERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
MTSV GHL +DF +ERY W C +L+ AP+ + +++K I + +EAR +L+
Sbjct: 58 MTSVAGHLTGIDFPNERY-GWGKCRIDELFDAPINEVFDKNQKKIADNIRKEARNANFLM 116
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFA 176
+W DCDREGE I +E+ N L + RA FS L R I A + +
Sbjct: 117 IWTDCDREGEYIGWEISREASKNNSRLTSNQIYRAVFSHLERRHIIDAARRPQRLDMGSV 176
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKN-----------FHIDSVTDDRNLVLSYGPCQFP 225
+AV R EIDLR G +FTR T ++N + ++ D + V+SYG CQFP
Sbjct: 177 NAVGTRMEIDLRAGVTFTRLLTETMRNKVSANTMGNSQHNNNNRRKDVSTVISYGTCQFP 236
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE 284
TLGFVV+R+ I+ +EEFW I SE G F+W RG+LFD + YE C++
Sbjct: 237 TLGFVVDRFERIRNFIAEEFWYIQLEIESSENGMTAFAWERGNLFDRLTVFTFYENCIEL 296
Query: 285 P--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
A V V+ + KY P PL+T+EL+K +R+ +M+++ ++ AE LYQ GFISYPR
Sbjct: 297 AGNRAKVVDVKSRPTSKYRPLPLTTVELQKNCARFLKMNAKQSLDAAEKLYQKGFISYPR 356
Query: 343 TETDSFSSGTNLHGIVQEQI-----GHPDWGPYAQRLLDHAAG--LWRNPGSGGHDDKAH 395
TETD+F NL ++++Q G W YA++L+ + G ++ P SG HDDKAH
Sbjct: 357 TETDTFPKNMNLRSLIEKQAQLGQEGRSVWANYAEQLISSSPGSNKFKTPRSGSHDDKAH 416
Query: 396 PPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRV 455
PPIHP ++ S+ +++YE V RHFLAC S+ A G T + ++ GE F+ +G V
Sbjct: 417 PPIHPIISLGRQANLSRVEHQVYEYVTRHFLACCSEDAKGQSTTLTLDWGGERFTATGLV 476
Query: 456 ILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+L +N+L+VY + W +P Q+ + + SG T PP ++E++L+ MD
Sbjct: 477 VLERNFLEVYPWAKWETTKRLPQLEINQECQISKARMKSGSTSPPKPMTESELIMLMDAN 536
Query: 515 GIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LWKPNLR 569
GIGTDAT+ +HI+K+ R Y + T PT +G ALV G++ +G E KP R
Sbjct: 537 GIGTDATIAEHIEKIQTRNYVRSEKVGKETYLQPTTLGVALVHGFEAIGLEDSFAKPFQR 596
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
ME ++K++ G ++K V+ + + + + + K LL+
Sbjct: 597 REMEVELKQICEGLRTKNQVVDDIVNKYRRYWAKTNGSKTTLLQ 640
>gi|406701616|gb|EKD04732.1| hypothetical protein A1Q2_00962 [Trichosporon asahii var. asahii
CBS 8904]
Length = 1818
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 228/613 (37%), Positives = 339/613 (55%), Gaps = 86/613 (14%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR-----GQPCHMLMT 62
+ VL VAEKPS+AKS+ ILS+N R+ +Y + Y+F+Y++ G+ +T
Sbjct: 1 MKVLCVAEKPSIAKSITAILSENN-FTSRQSGHQYIRNYDFDYNLPPPLGGGRGTDFTVT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL LD K ++ L+ EARR Q L++W
Sbjct: 60 SVLGHLTSLDM----------------------------KRVETNLKNEARRAQILMIWT 91
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I E+ VCR N ++ ++RARFSA+I +IHQA + + ++ A AV+AR
Sbjct: 92 DCDREGEHIGSEIESVCRRSNPNITVKRARFSAIIAAQIHQACRQAGNLDENQAKAVEAR 151
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTRF T L+ + + D + ++SYGPCQFPTLGFVV++Y +Q+
Sbjct: 152 TELDLRIGAAFTRFLTQTLQ-IRVPELGDQK--LVSYGPCQFPTLGFVVDQYNRVQSFVP 208
Query: 243 EEFW--TINCSHKSEEG---TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
E+FW ++ C S++G F W R HLFD AV++ +
Sbjct: 209 EQFWYISVTCERDSDDGETFKVEFKWRRNHLFDLDVAVLLSDF----------------- 251
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
P PL+T++L++ SR M+ + + GF+SYPRTETD + + +
Sbjct: 252 --RKPLPLTTVDLQQSGSRLLGMTPKRIL-------DKGFLSYPRTETDQYDKAFDFMAL 302
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+++Q + LLD G ++ P +G +DKAHPPIHPT + G + K+
Sbjct: 303 IRKQ-------ELNRELLD---GAFQTPRNGRKNDKAHPPIHPTNGAQG---LEGEERKV 349
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YE V R FLA S+ A G +T VEI IAGE F SG ++ A+NYL+VY ++ W IP
Sbjct: 350 YEFVTRRFLASCSKNAEGMQTTVEIEIAGEYFHASGVIVKARNYLEVYPYDKWNSNPIPD 409
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ G+QF+P L GVT P L+EADL+ MDK GIGTDAT+ DHI K++DR Y +
Sbjct: 410 FQEGEQFVPDECMLKEGVTTAPNYLTEADLVGLMDKNGIGTDATIADHIAKIIDREYVLT 469
Query: 538 DANTR---FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
+ P+ +G LV G++ +G++ L KP+LR E M+ + G + K +V+
Sbjct: 470 KTQQKTKYLVPSMLGIGLVEGFNAIGFDRSLSKPHLRRETEHRMQLICDGQQRKGEVIDL 529
Query: 593 CLQQMKACFLDAR 605
L++ + ++ A+
Sbjct: 530 SLEEYREVYVKAK 542
>gi|298709983|emb|CBJ31703.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 759
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/456 (45%), Positives = 284/456 (62%), Gaps = 15/456 (3%)
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEE-------GTATFSWMRGHL 268
V+SYGPCQFPTLGF+V+RY IQA +SE FW+I + ++ A FSW RG L
Sbjct: 12 VISYGPCQFPTLGFIVDRYKRIQAFQSEAFWSIKMEYAEDDPRSPGGKARADFSWQRGRL 71
Query: 269 FDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKV 328
+D+ I+YEM V++ A VT V + K P P+ST+EL+KRASR+ +SSE TM V
Sbjct: 72 YDHACCAILYEMTVEDGVAVVTSVEARRVTKARPIPMSTVELQKRASRFCHISSERTMHV 131
Query: 329 AEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSG 388
AE LYQ G ISYPRTET+ F +++ ++ + +P +G Y LLD+ LW G G
Sbjct: 132 AEALYQRGIISYPRTETEKFKREFDINTLLGDFRDNPRFGNYVGGLLDNGGFLWPREGRG 191
Query: 389 GHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
DD AHPPIHPTK S + D K+YELV +HFLAC S+ AVG +T V N GE
Sbjct: 192 --DDSAHPPIHPTK-SVDPNSLQADEKKIYELVTKHFLACCSKDAVGHQTKVLANCGGED 248
Query: 449 FSTSGRVILAKNYLDVYR-FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
F+ +G ++ +N+LDVY FE W G IP + GQ+F+P+ L +D G T+ PPLLSE+DL
Sbjct: 249 FTATGLMVTERNWLDVYEPFERWTGRNIPEFFQGQEFVPSVLVMDEGRTQAPPLLSESDL 308
Query: 508 LSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPN 567
+ MD+ GIGTDAT+ +HI+K+ R YA+K+ RF PT +G ALV GYD++G+++ P
Sbjct: 309 IGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPT 368
Query: 568 LRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERW--SGG 625
LR+ ME D +S G +K V+ C+ +MK CF + KL +A+ + F SGG
Sbjct: 369 LRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGG 428
Query: 626 EDQQA-AGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
E + G +CG+C + M LKKS G ++ C
Sbjct: 429 ESRTVRGGRGFSRCGVCGTA-MDLKKSSSGRPLLFC 463
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 646 MVLKKSRDGNLMVGCLAFPQC-RNAVWLPGSVSEAAVTTNTCNSCTPGP-----VYLIQF 699
+ +K++R G +GC +P C + VWLP + + +VT TC C+ GP V + F
Sbjct: 571 LNIKRTRTGKYHLGCKGYPACSESTVWLPKNATNVSVTEETCARCS-GPTAADAVRRLDF 629
Query: 700 KFR 702
F+
Sbjct: 630 TFK 632
>gi|62319698|dbj|BAD95240.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 865
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 234/637 (36%), Positives = 358/637 (56%), Gaps = 23/637 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A S+A +LS Q + R G + +++EF+ RG H +TSV GH
Sbjct: 5 LRVLMVAEKPSIALSIASVLSHGQ-MSTRGGST---EVHEFDGMFRGFKAHYRVTSVIGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +DF E+Y+ W + DP DL+ AP+ K K I + L EAR C ++VLWLDCDRE
Sbjct: 61 VFSVDFPEKYQNWATIDPQDLFGAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDRE 120
Query: 128 GENIAFEVIEVC--RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
GENI FEVIE + + RARFS++ +++I +A+ NLV+PN+ A AVDARQEI
Sbjct: 121 GENICFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEI 180
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DL++G +F+RFQT + + + D R V+SYGPCQ PTLGF V+RY I + E+F
Sbjct: 181 DLKVGVAFSRFQTSYFQGKYQN--LDCR--VISYGPCQTPTLGFCVQRYMHINTFKPEKF 236
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W + + + W R LFD +A + ++ V+ TA V V +++++K P L
Sbjct: 237 WALRPCIRKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+ L K AS + M +AE LY GFISYPRTE+ ++ S + ++ Q+ +P
Sbjct: 297 NTVNLLKVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNP 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG Y QRLL + P SG D HPPI P + ++ E ++LY+ V +HF
Sbjct: 357 VWGGYVQRLLSDG---FHMPKSGT-DAGDHPPITPMR-AATEVMVGGVAWRLYQYVCQHF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
L VS T VE++I GE F +G+ + K + + + + +P+++ G++
Sbjct: 412 LGTVSPNCKYIRTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIE 471
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ L G T PP L+E++L+S M+K GIGTDA++ HI + +R Y + + P
Sbjct: 472 VLRVELYEGNTAPPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVP 531
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T +G L+ GY + +L P++RS +E + V+ G + V+ + +QQ + F
Sbjct: 532 TALGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQADHSHVVQHVIQQFRRKF---- 587
Query: 606 LKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
V+ +E M FE ++S D +G + +CG C
Sbjct: 588 SYFVQQIEHMDALFEAQFSPLAD---SGRALSKCGKC 621
>gi|148665014|gb|EDK97430.1| topoisomerase (DNA) III beta, isoform CRA_a [Mus musculus]
Length = 867
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 237/647 (36%), Positives = 351/647 (54%), Gaps = 24/647 (3%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
G R VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTS
Sbjct: 3 GARMKTVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHKYTGTFAGQPVHFKMTS 61
Query: 64 VTGHLMELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
V GH+M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWL
Sbjct: 62 VCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWL 121
Query: 123 DCDREGENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
DCD+EGENI FEV++ V N + RARFS++ D +I A+ L +P+ A
Sbjct: 122 DCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEAL 181
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
+VDARQE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +I
Sbjct: 182 SVDARQELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKI 237
Query: 238 QAHESEEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
Q+ + E +W + H +E + W R +FD+ A + M E A V ++E
Sbjct: 238 QSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQMFLNMTKLEKEAWVEATSRKE 297
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K K P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G
Sbjct: 298 KAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKG 357
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
+++Q HP W ++LL A G+ N GHD HPPI P K S+ E+ D ++
Sbjct: 358 SLRQQANHPYWADSVKQLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWR 412
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVI 475
LYE + RHF+A VS ++ + I E F+ G+ +++ + ++ ++S +
Sbjct: 413 LYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPGFTEIMPWQSVPLEESL 472
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
PT G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 473 PTCQKGDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYV 532
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
++ R PTN+G LV GY + EL P +RS +E + ++ G VL + L
Sbjct: 533 TVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYHQVLGHTLD 592
Query: 596 QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
K F + E M + F + A G+ + +CG C
Sbjct: 593 IFKRKFHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 633
>gi|157786738|ref|NP_001099331.1| DNA topoisomerase 3-beta-1 [Rattus norvegicus]
gi|149019716|gb|EDL77864.1| topoisomerase (DNA) III beta (predicted) [Rattus norvegicus]
Length = 862
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V N + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVLNNAHNGEKTVFRARFSSITDTDICNAMTRLTEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + H +E + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVHTDKEESLLLDWDRVRVFDREIAQMFLNMTKLEKEAWVEATSKKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+VAE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQVAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADSVKQLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y +
Sbjct: 473 GDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G + VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYHKIDAELVLPTIRSAVEKQLNLIAQGKANYHQVLGHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|151941072|gb|EDN59452.1| DNA topoisomerase III [Saccharomyces cerevisiae YJM789]
gi|349579943|dbj|GAA25104.1| K7_Top3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 656
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 241/649 (37%), Positives = 345/649 (53%), Gaps = 45/649 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS-----IRGQPCHMLMT 62
+ VL VAEK S+AK+V+ IL + R+ Y K Y+F +S G C + MT
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTS-RDSGYMYVKNYDFMFSGFPFARNGANCEVTMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL +DF W C +L+ AP+ + + ++K I ++ EAR +L++W
Sbjct: 60 SVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADA 178
DCDREGE I +E+ + + N L+ + RA FS L + I A +N + A
Sbjct: 120 DCDREGEYIGWEIWQEAKRGN-RLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVHA 178
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVT------------DDRNLVLSYGPCQFPT 226
V R EIDLR G +FTR T L+N + T + + V+SYG CQFPT
Sbjct: 179 VGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFPT 238
Query: 227 LGFVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE 284
LGFVV+R+ I+ EEFW I +K GT TF W RGHLFD S + YE C++
Sbjct: 239 LGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIET 298
Query: 285 P--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
A V ++ + KY P PL+T+EL+K +RY R++++ ++ AE LYQ GFISYPR
Sbjct: 299 AGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYPR 358
Query: 343 TETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLLD----HAAGLWRNPGSGGH 390
TETD+F +L +V++Q G W YA LL ++ P SG H
Sbjct: 359 TETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGSH 418
Query: 391 DDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450
DDKAHPPIHP E+ S ++YE V RHFLAC S+ A G T + ++ A E FS
Sbjct: 419 DDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSTTLVLDWAAERFS 478
Query: 451 TSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
SG V+L +N+LDVY + W +P + +G T PP ++E++L+
Sbjct: 479 ASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELIL 538
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LW 564
MD GIGTDAT+ +HI K+ R Y + T PT +G +LV G++ +G E
Sbjct: 539 LMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLEDSFA 598
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
KP R ME D+K++ G+ SK DV+ + +++ + + K LL+
Sbjct: 599 KPFQRREMEQDLKKICEGHASKTDVVKDIVEKYRKYWHKTNACKNTLLQ 647
>gi|6755851|ref|NP_035754.1| DNA topoisomerase 3-beta-1 [Mus musculus]
gi|6686042|sp|Q9Z321.1|TOP3B_MOUSE RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|3868800|dbj|BAA34227.1| topoisomerase III beta [Mus musculus]
gi|21594767|gb|AAH31723.1| Topoisomerase (DNA) III beta [Mus musculus]
gi|74138777|dbj|BAE27200.1| unnamed protein product [Mus musculus]
gi|74194881|dbj|BAE26026.1| unnamed protein product [Mus musculus]
gi|148665016|gb|EDK97432.1| topoisomerase (DNA) III beta, isoform CRA_c [Mus musculus]
Length = 862
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 235/642 (36%), Positives = 349/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V N + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + H +E + W R +FD+ A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQMFLNMTKLEKEAWVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADSVKQLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYHQVLGHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|255073139|ref|XP_002500244.1| predicted protein [Micromonas sp. RCC299]
gi|226515506|gb|ACO61502.1| predicted protein [Micromonas sp. RCC299]
Length = 861
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 236/647 (36%), Positives = 346/647 (53%), Gaps = 32/647 (4%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
G P+ VL VAEKPS+A S+AG LS+ + R G+ +++EF G CH +T+V
Sbjct: 3 GLPV-VLCVAEKPSLAASIAGFLSEGKHRSRRGGQ----EVHEFERDFNGARCHFKVTAV 57
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GH++ +DF +++ W DPA L+ APV+K K + + LE EA+ L+LWLDC
Sbjct: 58 IGHVLSIDFPAKFQSW-DLDPAILFDAPVQKKEATPKARVVEHLEREAKGASHLILWLDC 116
Query: 125 DREGENIAFEVIEVCRAV----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
DREGENI FEVI+ C V + RA+FSA+ I +A++ L PN+ A AVD
Sbjct: 117 DREGENICFEVIDACAPVMRPNRGDTFVHRAKFSAVSKESIERAMRTLGAPNRAEALAVD 176
Query: 181 ARQEIDLRIGASFTRFQTMLLKN--FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
ARQE+DL++G +FTRFQT + H+D+ V+SYGPCQ PTL F V+R+ EI
Sbjct: 177 ARQELDLKVGVAFTRFQTRFFQGRYSHLDAS------VISYGPCQTPTLNFAVQRHLEIV 230
Query: 239 AHESEEFWTINCSHKSEE--GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
+H E+FW+++ +S T W R +FD + M + A V V + E
Sbjct: 231 SHTPEDFWSLHVEVRSTSLGKTLVTRWERERVFDGDVGEMFRSMVAGDRHALVESVEETE 290
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
+ K P L+T++L K AS M + M+VAE LY GFISYPRTE+ ++ G +L G
Sbjct: 291 EFKRRPPGLNTVDLLKAASAGMGMGAHRAMQVAERLYIQGFISYPRTESTAYPPGFDLKG 350
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
++ Q GHPDWG + + LL AG P GG D+ HPPI P + ++ + + ++
Sbjct: 351 TLKAQRGHPDWGEWVEELL---AGSMTKP-RGGKDEGDHPPITPVRSATESAVGGGEAWR 406
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
LY+ V RHF+A VS + GE F SG+ ++A + V + +
Sbjct: 407 LYDFVARHFIASVSPDCAYVSRRATLVAGGERFRVSGQTVIAPGWTTVMPHRAVEDDPLG 466
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
G+ T+ L G T PPP LSEA+L+ M++ GIGTDA++ HI + R Y
Sbjct: 467 EIERGESLPIATVELRQGATSPPPYLSEAELIGLMERNGIGTDASIPTHINNIESRKYVT 526
Query: 537 --KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
R PT++G LV GY + EL P +RS +E + ++ G ++ + L
Sbjct: 527 IQSQGGRRVVPTDLGVTLVQGYHRIDPELALPAVRSHVEKQLDMIATGKADHESIVRHTL 586
Query: 595 QQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
Q A F + V +E M FE + + ++G+ +CG C
Sbjct: 587 AQFAAKFRNF----VDQIERMDTLFE--ASFDPTCSSGKPFSKCGRC 627
>gi|401624635|gb|EJS42690.1| top3p [Saccharomyces arboricola H-6]
Length = 655
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/647 (37%), Positives = 348/647 (53%), Gaps = 42/647 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-----RGQPCHMLMT 62
+ VL VAEK S+AK+V+ IL + R+ Y K Y+F YS G C + MT
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTS-RDSGYMYVKNYDFIYSGFPFAGNGVNCEVTMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL +DF W C +L+ AP+ + + ++K I ++ EA+ +L++W
Sbjct: 60 SVAGHLTGIDFSHEAYGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREAKNADYLMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
DCDREGE I +E+ + + N + + RA FS L + I A +N + +AV
Sbjct: 120 DCDREGEYIGWEIWQEAKRGNRRIQDSQVYRAVFSHLERQHILNAARNPNRLDMKSVNAV 179
Query: 180 DARQEIDLRIGASFTRFQTMLLKN-FHIDSVT-----------DDRNLVLSYGPCQFPTL 227
R EIDLR G +FTR T L+N S T + V+SYG CQFPTL
Sbjct: 180 GTRIEIDLRAGVTFTRLLTETLRNKLRGQSATTKDGGRPRGGSKSDSQVVSYGTCQFPTL 239
Query: 228 GFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEP 285
GFVV+R+ I+ +EEFW I + +K GT TF W RGHLFD S + IYE C++
Sbjct: 240 GFVVDRFERIRNFIAEEFWYIQLTVDNKDNGGTTTFQWDRGHLFDRLSVLTIYETCIETA 299
Query: 286 --TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRT 343
A V ++ + KY P PL+T+EL+K +RY R++++ ++ AE LYQ GFISYPRT
Sbjct: 300 GNVAKVVDLKSKPTSKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYPRT 359
Query: 344 ETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLL---DHAAGLWRNPGSGGHDD 392
ETD+F +L +V++Q G W YA LL + + SG HDD
Sbjct: 360 ETDTFPQAMDLKALVEKQAQLDQSSPAGKTAWASYAASLLTPESTSTNKFNFSRSGSHDD 419
Query: 393 KAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTS 452
KAHPPIHP + ++ S ++YE V RHFLAC S+ A G T + ++ A E F+ S
Sbjct: 420 KAHPPIHPITSLAPDANVSPVERRVYEYVARHFLACCSEDAKGLSTTLTLDWATERFTPS 479
Query: 453 GRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
G V+L +N+LDVY + W +P + +G T PP ++E++L+ M
Sbjct: 480 GLVVLERNFLDVYPWARWETTKQLPRLEINTLVDIAKAEMKTGSTAPPKPMTESELILLM 539
Query: 512 DKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LWKP 566
D GIGTDAT+ +HI K+ R Y + T PT +G +LV G++ +G E KP
Sbjct: 540 DANGIGTDATIAEHIDKIQVRNYVRTEKAGKETYLQPTTLGVSLVHGFEAIGLEDSFAKP 599
Query: 567 NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
R ME D+K++ G ++ADVL + +++ + +L K LL+
Sbjct: 600 FQRREMEQDLKKICDGQSTRADVLKDIVEKYRRYWLKTNGCKNTLLQ 646
>gi|190405298|gb|EDV08565.1| DNA topoisomerase III [Saccharomyces cerevisiae RM11-1a]
gi|256271738|gb|EEU06775.1| Top3p [Saccharomyces cerevisiae JAY291]
gi|259148217|emb|CAY81464.1| Top3p [Saccharomyces cerevisiae EC1118]
gi|323332349|gb|EGA73758.1| Top3p [Saccharomyces cerevisiae AWRI796]
gi|323336488|gb|EGA77755.1| Top3p [Saccharomyces cerevisiae Vin13]
gi|323347440|gb|EGA81711.1| Top3p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764070|gb|EHN05595.1| Top3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 656
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 241/649 (37%), Positives = 345/649 (53%), Gaps = 45/649 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS-----IRGQPCHMLMT 62
+ VL VAEK S+AK+V+ IL + R+ Y K Y+F +S G C + MT
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTS-RDSGYMYVKNYDFMFSGFPFARNGANCEVTMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL +DF W C +L+ AP+ + + ++K I ++ EAR +L++W
Sbjct: 60 SVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADA 178
DCDREGE I +E+ + + N L+ + RA FS L + I A +N + A
Sbjct: 120 DCDREGEYIGWEIWQEAKRGN-RLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVHA 178
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVT------------DDRNLVLSYGPCQFPT 226
V R EIDLR G +FTR T L+N + T + + V+SYG CQFPT
Sbjct: 179 VGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFPT 238
Query: 227 LGFVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE 284
LGFVV+R+ I+ EEFW I +K GT TF W RGHLFD S + YE C++
Sbjct: 239 LGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIET 298
Query: 285 P--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
A V ++ + KY P PL+T+EL+K +RY R++++ ++ AE LYQ GFISYPR
Sbjct: 299 AGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYPR 358
Query: 343 TETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLLD----HAAGLWRNPGSGGH 390
TETD+F +L +V++Q G W YA LL ++ P SG H
Sbjct: 359 TETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGSH 418
Query: 391 DDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450
DDKAHPPIHP E+ S ++YE V RHFLAC S+ A G T + ++ A E FS
Sbjct: 419 DDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSTTLVLDWAVERFS 478
Query: 451 TSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
SG V+L +N+LDVY + W +P + +G T PP ++E++L+
Sbjct: 479 ASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELIL 538
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LW 564
MD GIGTDAT+ +HI K+ R Y + T PT +G +LV G++ +G E
Sbjct: 539 LMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLEDSFA 598
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
KP R ME D+K++ G+ SK DV+ + +++ + + K LL+
Sbjct: 599 KPFQRREMEQDLKKICEGHASKTDVVKDIVEKYRKYWHKTNACKNTLLQ 647
>gi|348543165|ref|XP_003459054.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Oreochromis
niloticus]
Length = 856
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 242/642 (37%), Positives = 347/642 (54%), Gaps = 28/642 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+VL VAEKPS+A+++A ILSK R+G + ++E+ +GQ H MTSV GH+
Sbjct: 3 SVLMVAEKPSLAQAIAKILSKGNCTS-RKGLNGACSVHEYTGIFQGQTVHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K ++ K L+ EAR +VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEARGSDCVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
GENI FEV++ + V R RA+FS++ D +I A+ L +PN+ A +VDARQE
Sbjct: 122 GENICFEVLDAIQPVMNKGSARSVYRAKFSSITDTDIWNAMNRLGEPNRNEALSVDARQE 181
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 182 LDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPET 237
Query: 245 FWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+W I K +E T W R +FD + + A V V ++EK K P
Sbjct: 238 YWVIQTKVFKGKESPLTLDWNRVRVFDREVGQMFVNLAKTSREAQVELVSKKEKTKQRPQ 297
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 ALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPVNFDLKGTLKQQTN 357
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+P W + LL + G+ N G D HPPI P ++ E+ D ++LYE + R
Sbjct: 358 NPFWAEEVKVLL--STGI--NQPRKGTDAGDHPPITPM-CAATEAELGSDSWRLYEYITR 412
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTYV 479
HF+A VSQ +T +E +I E FS SGR +++ Y V W G+ IP
Sbjct: 413 HFIATVSQDCKYLQTTIEFSIGTEAFSCSGRTLISPGYTTVM---PWQGIPLEESIPVCE 469
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
HG F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 470 HGDTFSVDEIKLIEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVES 529
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
+ PTN+G LV GY + EL P +RS +E + ++ G + VL + L K
Sbjct: 530 GRKLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKANYQQVLQHALDIFKR 589
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
F + E M + F + A G+ + +CG C
Sbjct: 590 KFHYFVDSITNMDELMEVSFSPIA------ATGKPLSRCGKC 625
>gi|397472510|ref|XP_003807785.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan paniscus]
gi|397472512|ref|XP_003807786.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan paniscus]
Length = 862
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 238/642 (37%), Positives = 349/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++V +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDVVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + +V ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|242006813|ref|XP_002424239.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
gi|212507608|gb|EEB11501.1| DNA topoisomerase 3-beta, putative [Pediculus humanus corporis]
Length = 852
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 232/639 (36%), Positives = 341/639 (53%), Gaps = 23/639 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS + R+G + ++E+ + R +P MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILSNGKS-STRKGFNGACSVHEWVGTFRMEPVTFRMTSVCGHIMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
L+F +Y W DP +L P K K + L +EAR C +L+LWLDCD+EGEN
Sbjct: 64 LEFSGKYNNWDKVDPVELLSCPTEKKEANSKLKMPYFLSQEARGCDYLILWLDCDKEGEN 123
Query: 131 IAFEVIEVCR-----AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
I FEVI + V V+ RA+FSA+ +++I A NL PN+ A +VDARQE+
Sbjct: 124 ICFEVIHAVQHSLKADVRRGDVVYRAKFSAITEKDIKAAFANLGVPNENEARSVDARQEL 183
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLR+G +FTRFQT K FH D D ++SYGPCQ PTLGF V+R+ EIQ + E +
Sbjct: 184 DLRVGCAFTRFQT---KFFH-DKYGDLDAALISYGPCQIPTLGFCVQRHDEIQTFKPEPY 239
Query: 246 WTINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
W + S K+E G AT W R F+ A++ + A V+ V ++ P
Sbjct: 240 WVLQMSVKTESGQEATLEWERVRCFEKEVALMFLSQVKEFKEAKVSSVTSKQMTNSKPLA 299
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL + AS M H M++AE LY G+ISYPRTET + + G++++Q
Sbjct: 300 LNTVELMRTASSGLGMGPHHAMQIAERLYTQGYISYPRTETTQYPENFDFIGVLRQQQSS 359
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
+WG + + +L+ R G D HPPI P K + + + + +KLY+ +VRH
Sbjct: 360 SEWGSFVREILNEGISKPRK----GKDVGDHPPITPMKLAK-RNDFDAESWKLYDYIVRH 414
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQQ 483
FLA VS P T+V IA E F +G+ +L Y + +E++G +P +
Sbjct: 415 FLATVSGPCKYLHTVVTFKIASETFKITGKTLLEPGYTAIMPWEAFGKNETLPNFTVDAT 474
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ L T PP ++EA+L++ M+K GIGTDA++ HI + R Y ++ R
Sbjct: 475 VTINDVKLIECQTTPPGYMTEAELITQMEKHGIGTDASIPVHINNICQRNYVTVESGRRL 534
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT++G LV GY + EL P +RS +E + ++ G VL++ L+ + FL
Sbjct: 535 VPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIAQGQAHFDAVLSHSLEIFRQKFLY 594
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
VK +E M FE +G+ +CG C+
Sbjct: 595 F----VKNIEGMDQLFE--VSFSPLATSGKAHSRCGKCR 627
>gi|449459882|ref|XP_004147675.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 867
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/637 (36%), Positives = 360/637 (56%), Gaps = 25/637 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A S+A LS Q + R+G + +++EF+ G + +TSV GH+
Sbjct: 5 TVLMVAEKPSIALSIASALSHGQ-MSTRKGST---EVHEFDGRFLGHHAYYKVTSVIGHV 60
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+DF ++ W S DP DL+ A V K K I + L EAR C LVLWLDCDREG
Sbjct: 61 FSIDFQAGFQDWKSTDPLDLFQASVIKTESNPKAHICQHLSREARGCDCLVLWLDCDREG 120
Query: 129 ENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
ENI FEVIE C + + RARFS++ +++I +A+ NLV+PN+ A AVDARQEI
Sbjct: 121 ENICFEVIE-CTGFGGNGTRKKVYRARFSSVTEKDILKALDNLVEPNRNEALAVDARQEI 179
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DL++G +FTRFQT + + + D R ++SYGPCQ PTLGF V+R+ +I + E+F
Sbjct: 180 DLKVGVAFTRFQTTFFQGKYGN--LDSR--LISYGPCQTPTLGFCVQRHLQITTFKPEKF 235
Query: 246 WTINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
W++ C + + G W RG LFD + + +++ A VT++ ++++ K P
Sbjct: 236 WSV-CPYILQTGYELNLDWERGKLFDCDVTAMFQKRVIEDGIAEVTEISEKQENKVRPSG 294
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+ L K AS + M++AE LY GFISYPRTE+ ++ S + G + + +
Sbjct: 295 LNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLHTLVKN 354
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P+WG Y + LL + P SG D HPPI P ++ E +D ++LY+ V +H
Sbjct: 355 PEWGDYVRMLLSDG---YSKPRSGT-DVGDHPPITPMCLAT-EDMLGRDAWRLYQYVCQH 409
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
F+ +S T ++ +IAGE+F+ +G + K + + + + +P ++ G++
Sbjct: 410 FIGSLSSDCKYIRTKIQFSIAGEIFNCTGSRVTVKGFTSIMPWLAVNEKKLPQFLKGEKI 469
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ L G T PP LSE++L+S M+K GIGTDA++ HI + +R Y A R
Sbjct: 470 EVARVDLYQGNTTPPDYLSESELISLMEKHGIGTDASIPVHINNIGERNYVQVQAGRRLV 529
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PTN+G L+ GY + +L P++RS +E + V+ G + V+ + LQQ + +
Sbjct: 530 PTNLGITLIRGYQCIDPDLCLPDIRSFIEHQITLVAKGQADHSSVVQSVLQQFRQKY-SY 588
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+KK+ ++A+ F ++S D +G + +CG C
Sbjct: 589 FVKKIDHMDAL--FEAQFSPLAD---SGRALSKCGKC 620
>gi|296191436|ref|XP_002743624.1| PREDICTED: DNA topoisomerase 3-beta-1 [Callithrix jacchus]
Length = 862
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 235/642 (36%), Positives = 349/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGALRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P + S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADMVKRLL--AEGI--NRPRKGHDAGDHPPITPMR-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFTVSEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|209878332|ref|XP_002140607.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
gi|209556213|gb|EEA06258.1| DNA topoisomerase family protein [Cryptosporidium muris RN66]
Length = 857
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 237/640 (37%), Positives = 350/640 (54%), Gaps = 27/640 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A++VA +LS N L R+ ++ ++E+ + + +TSV+GH+
Sbjct: 31 VLMVAEKPSIAETVAKVLS-NGNLNTRQCKT---PVHEYTAYFQHKRALFKVTSVSGHVF 86
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
E DF +Y W S DP DL+ P K+ E + L EA+ C +LVLWLDCDREGE
Sbjct: 87 ETDFPSKYSNWESIDPVDLFDLPTVKN--ESSSKMIAHLLREAKNCDFLVLWLDCDREGE 144
Query: 130 NIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
NI FEVI V + V N L + RARFS++ +++ +A+ NL PN+ ADAVD RQE
Sbjct: 145 NICFEVISVVKDVMAKGRNESLWIFRARFSSVAPKDVIEAMNNLKSPNRDEADAVDVRQE 204
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DL+IG +F+RFQT LK + D N +LSYGPCQ PTL FVV+R +I E+
Sbjct: 205 LDLKIGVAFSRFQTTYLKTKY----GDFNNSILSYGPCQTPTLFFVVQRRDKILGFSPEK 260
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMC--VQEPTATVTKVRQQEKLKYPP 302
F+ +N + + ++ + +W R +FD S +Y A V ++++ P
Sbjct: 261 FYYLNVTIEYKDIILSPTWERKKIFDLQSIQCLYNTVNSTYPIIAKVIDIKKKADRISRP 320
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL+T+++ K AS +S M +AE LY +GFI+YPRTET + +
Sbjct: 321 LPLNTVQMLKLASNILGISPFQAMNIAEKLYLSGFITYPRTETTKYPKSFDTKEAASIHK 380
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP WG Y +L A + NP G D HPPI P + S + + D+++LYEL+
Sbjct: 381 DHPLWGQYTCDIL---ARNYTNPRQDGIDVGDHPPIVPIR-SVISNDLAGDNWRLYELIT 436
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLA +S V +I GE F+ GR I + +Y+ +S + IP G
Sbjct: 437 RHFLATISPDIKFTNEFVIFDINGEKFTLQGRRINEYGFSIIYKSKSINSISIPQLDLGM 496
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ ++ + +G T+PPPLLSE +LLS M+K GIGTDA+M HI+KL++R Y +
Sbjct: 497 KLNLKSIEICNGETKPPPLLSEGNLLSLMEKNGIGTDASMPVHIQKLIERKYVNIIDGRK 556
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G AL+ GY ++ EL P +RS ME + +S G + +VL + L K FL
Sbjct: 557 LEPTRLGNALIHGYMNIDIELVYPMIRSEMERYISLISQGKANAGNVLKHTLAIFKLKFL 616
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
VK + + F+ + ++G + +CG C+
Sbjct: 617 FF----VKNITSFESLFQL--SFTNLSSSGTRLSKCGQCK 650
>gi|402883653|ref|XP_003905324.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Papio anubis]
gi|402883655|ref|XP_003905325.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Papio anubis]
Length = 862
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAYGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|384249381|gb|EIE22863.1| prokaryotic type I DNA topoisomerase [Coccomyxa subellipsoidea
C-169]
Length = 866
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 247/682 (36%), Positives = 360/682 (52%), Gaps = 49/682 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A S+A LS++Q R Y ++E++ +G+ H MTSV GH++
Sbjct: 8 VLLVAEKPSLALSIATFLSQSQA----RYRKSYLDVHEWDGKFQGRAAHFRMTSVIGHVL 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF +Y+ W + DPA L+ AP K K + K L++EAR C +LVLWLDCDREGE
Sbjct: 64 SIDFPPKYQNWETTDPASLFDAPTVKTEATPKAHVCKHLQQEARGCSYLVLWLDCDREGE 123
Query: 130 NIAFEVIE-----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
NI FEV++ + R + RARFSA+ EI A++ L +PN+ A+AVDARQE
Sbjct: 124 NICFEVMDNTLKWMVRVPGQQVF--RARFSAISAPEILAAMERLGEPNRAEAEAVDARQE 181
Query: 185 IDLRIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
+DL++G +FTRFQT K ++D+ V+SYGPCQ PTL F V+R+ I A +
Sbjct: 182 LDLKVGVAFTRFQTRYFQGKYGNLDAS------VISYGPCQTPTLFFCVQRHQLITAFQP 235
Query: 243 EEFWTI--NCSHKSEEGTATF----SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
E++WTI NC G F W RG LFD A++ + + +V +E
Sbjct: 236 EDYWTIRPNC------GVCVFRIDVEWSRGRLFDRDVALLFQRIVTEARALRCVEVSAKE 289
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
+ + P L+T+EL K AS MS + M+ AE LY +G+ISYPRTE+ ++ G + H
Sbjct: 290 ERRQRPNGLNTVELMKTASSAMGMSPQQAMRCAEGLYTSGYISYPRTESTAYPPGFDFHE 349
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
++ E HP WG YA L+ H A P GGHD HPPI P ++ D ++
Sbjct: 350 VLVEMRRHPIWGEYAAGLMGHGA---FAPPKGGHDAGDHPPITPIASATEAELGGGDDWR 406
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
LY+ + RHFL +S V T E FS +G + + V +++ G +P
Sbjct: 407 LYDYIARHFLGSLSPDCVLRRTTAAFAAGNERFSATGVAPVRAGFTAVMPWKAVQGEPLP 466
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
G+ T + L G T PP L+E++L+ M+K GIGTDA++ HI K+ +R+ +I
Sbjct: 467 PLHEGEILPITEVELKQGKTSPPDYLTESELIGLMEKHGIGTDASISVHIAKVCERYVSI 526
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
+ R PT +G LV GY + +L P +RS +E + ++ G + V+A+ L Q
Sbjct: 527 QSGR-RLMPTELGVTLVRGYQLIDPDLCLPLVRSHVEKQIDLIAQGLAGREAVVAHTLDQ 585
Query: 597 MKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNL 656
F V +E M FE + ++G+ + +CG C M L R +
Sbjct: 586 FSRKF----RYFVGKIERMDALFE--ASFSPLASSGKPLSKCGKCAR-YMKLISVRPSRM 638
Query: 657 MVGCLAFPQCRNAVWLP--GSV 676
P C + LP GSV
Sbjct: 639 YC-----PTCEEVLNLPQGGSV 655
>gi|367006322|ref|XP_003687892.1| hypothetical protein TPHA_0L01010 [Tetrapisispora phaffii CBS 4417]
gi|357526198|emb|CCE65458.1| hypothetical protein TPHA_0L01010 [Tetrapisispora phaffii CBS 4417]
Length = 651
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 241/644 (37%), Positives = 354/644 (54%), Gaps = 39/644 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS----IRGQPCHMLMTS 63
+ VL VAEK S+AK+V+ IL + R+ Y K Y+FN+S + C + MTS
Sbjct: 1 MRVLCVAEKNSIAKAVSQILGGGSSI-ARDSGYMYVKNYDFNFSGFPFADSRDCQVTMTS 59
Query: 64 VTGHLMELDF-DERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
V GHL +DF +ERY W C +L+ AP+ + + +++K I ++ EAR L++W
Sbjct: 60 VAGHLTGVDFANERY-GWGKCAIHELFDAPLSQTLDKNQKKIADNIKREARNADALMIWT 118
Query: 123 DCDREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
DCDREGE I +E++ + N L + RA FS L I A +N + AV
Sbjct: 119 DCDREGEYIGWEILIEAKKGNGSLNESNIYRAVFSHLERSHILHAARNPKRLDMNSVHAV 178
Query: 180 DARQEIDLRIGASFTRFQTMLLK-NFHIDSVTDDR-----NLVLSYGPCQFPTLGFVVER 233
R EIDLR G SFTR T +K +V +R N+V+SYG CQFPTLGFVV+R
Sbjct: 179 GTRMEIDLRAGVSFTRLLTETMKPKICPPAVGPNRNKKKENIVISYGTCQFPTLGFVVDR 238
Query: 234 YWEIQAHESEEFWTINCSHKSEE----GTATFSWMRGHLFDYTSAVIIYEMCVQEP--TA 287
+ I+ EEFW I + + T F W +GHLFD S + YE+C++ A
Sbjct: 239 FERIRNFIPEEFWYIQLQIANPDPNITTTTPFQWEKGHLFDRLSVLTFYELCIETAGNKA 298
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDS 347
V ++ + KY P PL+T+EL+K +R+ +++++ ++ AE LYQ GF+SYPRTETD
Sbjct: 299 KVIDLKSKPTSKYRPLPLTTVELQKNCARFLKINAKQSLDAAEKLYQKGFLSYPRTETDI 358
Query: 348 FSSGTNLHGIVQEQI--------GHPDWGPYAQRLL-DHAAG--LWRNPGSGGHDDKAHP 396
F +L +V++Q W YA+ LL D+ G ++ P +G HDDKAHP
Sbjct: 359 FPKTMDLKKLVEKQAQLDQTNSSNRSPWADYAKNLLSDNIEGHSQFQTPRAGTHDDKAHP 418
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
PIHP + + ++YE VVRHFLAC S+ G T + ++ AGE F+ +G V+
Sbjct: 419 PIHPIIALGEHATITPVERRVYEYVVRHFLACCSEDGKGTSTTLILDWAGEKFTATGIVV 478
Query: 457 LAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
L +N+LDVY + W +P Q T + SG T PP ++E++L+ MD G
Sbjct: 479 LQRNFLDVYPWAKWETTKQLPRLEMNQLADIVTAEMRSGSTSPPKPMTESELIMLMDANG 538
Query: 516 IGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRS 570
IGTDAT+ +HI+K+ R Y + + PT +G ALV G+++MG E KP R
Sbjct: 539 IGTDATIAEHIEKIQARNYIRPEKVGKESYLQPTTLGIALVHGFEEMGLEDSFAKPFQRR 598
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
ME D+K++ G K++ +V +N + + + + K KLLE
Sbjct: 599 EMEEDLKKICDGIKTRQEVTSNIVTKYRNYYRRTNTSKNKLLEV 642
>gi|365992220|ref|XP_003672938.1| hypothetical protein NDAI_0L02110 [Naumovozyma dairenensis CBS 421]
gi|410730103|ref|XP_003671229.2| hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
gi|401780049|emb|CCD25986.2| hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
Length = 656
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 238/648 (36%), Positives = 346/648 (53%), Gaps = 42/648 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS----IRGQPCHMLMTS 63
+ VL VAEK S+AK+V+ IL R+ Y K Y+F + + C + MTS
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGG-SCNSRDSGYTYVKNYDFKFDGFPFVSTNDCDVTMTS 59
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHL +DF W+ C +L+ AP+ + ++K I ++ EAR +L++W D
Sbjct: 60 VAGHLTSVDFRPDIYGWNKCRIDELFTAPLSTEMDNNQKKIAANIKREARYADFLMIWTD 119
Query: 124 CDREGENIAFEVIEVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
CDREGE I +E+ + N L + RA FS L R + A + + DAV
Sbjct: 120 CDREGEYIGWEIFQEALKGNSRLTNSQVYRANFSHLERRHVLNAARRPQRLDLKSVDAVG 179
Query: 181 ARQEIDLRIGASFTRFQTMLLK------NFHIDSVTDDRNL---------VLSYGPCQFP 225
AR E+DLR G +FTR T +K N S++ + N+ ++SYG CQFP
Sbjct: 180 ARIELDLRTGVTFTRLLTNTMKAKVETWNRSQTSISSNGNMSSRAKEPPTIISYGACQFP 239
Query: 226 TLGFVVERYWEIQAHESEEFWTINCSHKSEEGTA--TFSWMRGHLFDYTSAVIIYEMCVQ 283
TLGFVV+RY I+ SEEFW I K E A TF W RGHLFD S + YE C++
Sbjct: 240 TLGFVVDRYERIKHFVSEEFWYIQLVIKDPESGASTTFQWDRGHLFDRLSVLAFYETCLE 299
Query: 284 EP--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
A V + + KY P PL+T+EL++ +R+ R++++ ++ AE LYQ GF+SYP
Sbjct: 300 TAGDKAKVVDLISKPTSKYRPLPLTTVELQRNCARFLRLNAKKSLAAAEKLYQKGFVSYP 359
Query: 342 RTETDSFSSGTNLHGIVQEQI------GHPDWGPYAQRLLDHAA---GLWRNPGSGGHDD 392
RTETD F +L +V+ + W YA+ LL A +R P SG HDD
Sbjct: 360 RTETDIFPQAMDLQSLVRNRAQLDQSNNRTAWASYAEGLLSDDASNTNKFRFPRSGTHDD 419
Query: 393 KAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTS 452
KAHPPIHP + + D ++YE +VRHFLAC S+ A G T + ++ A E F S
Sbjct: 420 KAHPPIHPVVSVGPNANLTPDEKRVYEYIVRHFLACCSEDAKGQSTTLTLDWADERFVAS 479
Query: 453 GRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
G ++L +N+LDVY + W +P Q+ ++ G T PP ++E++L+ M
Sbjct: 480 GLIVLERNFLDVYPWAKWETTKRLPRLEINQECEIGKAEMNFGHTSPPKPMTESELIMLM 539
Query: 512 DKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LWKP 566
D GIGTDAT+ DHI+K+ R Y + +T F PT +G ALV G++ +G E KP
Sbjct: 540 DANGIGTDATIADHIEKIQTRKYIKSEKVGKDTFFQPTVLGIALVHGFEAIGLEDSFAKP 599
Query: 567 NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
R ME D+K++ G +K +V+ + + + ++ + K LLE
Sbjct: 600 FQRREMEEDLKKICQGQLTKNEVVNDIVGKYQSYWQRTNESKRTLLEV 647
>gi|332859251|ref|XP_515006.3| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pan troglodytes]
gi|332859253|ref|XP_003317172.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Pan troglodytes]
gi|410207778|gb|JAA01108.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410256630|gb|JAA16282.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410290228|gb|JAA23714.1| topoisomerase (DNA) III beta [Pan troglodytes]
gi|410350957|gb|JAA42082.1| topoisomerase (DNA) III beta [Pan troglodytes]
Length = 862
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 237/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + +V ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|4507635|ref|NP_003926.1| DNA topoisomerase 3-beta-1 [Homo sapiens]
gi|6686033|sp|O95985.1|TOP3B_HUMAN RecName: Full=DNA topoisomerase 3-beta-1; AltName: Full=DNA
topoisomerase III beta-1
gi|4768877|gb|AAD29670.1|AF125216_1 DNA topoisomerase III beta [Homo sapiens]
gi|4102879|gb|AAD01614.1| DNA topoisomerase III beta [Homo sapiens]
gi|4321652|gb|AAD15791.1| DNA topoisomerase III beta [Homo sapiens]
gi|47678723|emb|CAG30482.1| TOP3B [Homo sapiens]
gi|109451532|emb|CAK54627.1| TOP3B [synthetic construct]
gi|109452128|emb|CAK54926.1| TOP3B [synthetic construct]
gi|119579891|gb|EAW59487.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579892|gb|EAW59488.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579894|gb|EAW59490.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|119579895|gb|EAW59491.1| topoisomerase (DNA) III beta, isoform CRA_a [Homo sapiens]
gi|208965626|dbj|BAG72827.1| topoisomerase (DNA) III beta [synthetic construct]
Length = 862
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 237/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + +V ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|12803239|gb|AAH02432.1| Topoisomerase (DNA) III beta [Homo sapiens]
Length = 862
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 237/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWANTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + +V ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|6323263|ref|NP_013335.1| DNA topoisomerase 3 [Saccharomyces cerevisiae S288c]
gi|136001|sp|P13099.1|TOP3_YEAST RecName: Full=DNA topoisomerase 3; AltName: Full=DNA topoisomerase
III
gi|173002|gb|AAA35161.1| DNA topoisomerase [Saccharomyces cerevisiae]
gi|609366|gb|AAB67406.1| Top3p: DNA Topoisomerase III [Saccharomyces cerevisiae]
gi|285813654|tpg|DAA09550.1| TPA: DNA topoisomerase 3 [Saccharomyces cerevisiae S288c]
gi|392297742|gb|EIW08841.1| Top3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 656
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 240/649 (36%), Positives = 344/649 (53%), Gaps = 45/649 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS-----IRGQPCHMLMT 62
+ VL VAEK S+AK+V+ IL + R+ Y K Y+F +S G C + MT
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTS-RDSGYMYVKNYDFMFSGFPFARNGANCEVTMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL +DF W C +L+ AP+ + + ++K I ++ EAR +L++W
Sbjct: 60 SVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADA 178
DCDREGE I +E+ + + N L+ + RA FS L + I A +N + A
Sbjct: 120 DCDREGEYIGWEIWQEAKRGN-RLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVHA 178
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVT------------DDRNLVLSYGPCQFPT 226
V R EIDLR G +FTR T L+N + T + + V+SYG CQFPT
Sbjct: 179 VGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFPT 238
Query: 227 LGFVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE 284
LGFVV+R+ I+ EEFW I +K GT TF W RGHLFD S + YE C++
Sbjct: 239 LGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIET 298
Query: 285 P--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
A V ++ + KY P PL+T+EL+K +RY R++++ ++ AE LYQ GFISYPR
Sbjct: 299 AGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYPR 358
Query: 343 TETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLLD----HAAGLWRNPGSGGH 390
TETD+F +L +V++Q G W YA LL ++ P SG H
Sbjct: 359 TETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGSH 418
Query: 391 DDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450
DDKAHPPIHP E+ S ++YE V RHFLAC S+ A G + ++ A E FS
Sbjct: 419 DDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSMTLVLDWAVERFS 478
Query: 451 TSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
SG V+L +N+LDVY + W +P + +G T PP ++E++L+
Sbjct: 479 ASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELIL 538
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LW 564
MD GIGTDAT+ +HI K+ R Y + T PT +G +LV G++ +G E
Sbjct: 539 LMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLEDSFA 598
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
KP R ME D+K++ G+ SK DV+ + +++ + + K LL+
Sbjct: 599 KPFQRREMEQDLKKICEGHASKTDVVKDIVEKYRKYWHKTNACKNTLLQ 647
>gi|388454142|ref|NP_001253336.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
gi|355784822|gb|EHH65673.1| hypothetical protein EGM_02484 [Macaca fascicularis]
gi|383412047|gb|AFH29237.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAYGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVSVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|380787141|gb|AFE65446.1| DNA topoisomerase 3-beta-1 [Macaca mulatta]
Length = 862
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAYGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVSVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGRCH 628
>gi|91081101|ref|XP_975504.1| PREDICTED: similar to prokaryotic DNA topoisomerase [Tribolium
castaneum]
gi|270005298|gb|EFA01746.1| hypothetical protein TcasGA2_TC007344 [Tribolium castaneum]
Length = 852
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/644 (35%), Positives = 343/644 (53%), Gaps = 29/644 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+V VAEKPS+A S+A ILS N R+G + ++E+N + +G P + MTSV GH+
Sbjct: 3 SVFMVAEKPSLAASLASILS-NGSNSTRKGSNGICSVHEWNGTFQGAPARLKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M +DF +Y W DP +L+ P+ K K + L EA+ C +LVLWLDCD+EG
Sbjct: 62 MGVDFISKYNNWDRVDPVELFSCPIEKKEATPKFKMPAFLSHEAKGCDYLVLWLDCDKEG 121
Query: 129 ENIAFEVI-EVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV+ V R++N + V RARFSA+ D++I A NL PN+ A +VDARQ
Sbjct: 122 ENICFEVMNSVARSMNGDVYSDKVTFRARFSAITDKDIKAAFNNLAHPNENEARSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQTKFFQGRYGDL---DSSLI-SYGPCQTPTLGFCVQRHDQIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTAT-FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W I + +++G W R FD A + + + A V V +EK K P
Sbjct: 238 AYWVIKATIVTKDGNDVHLDWKRVRCFDKEVANMFLQQIKDQKHAKVLNVSSKEKAKSRP 297
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+EL + AS M H M++AE LY G+ISYPRTET + +L G++++Q
Sbjct: 298 VALNTVELMRVASSGLGMGPHHAMQIAEKLYTQGYISYPRTETTRYPENFDLVGVLRQQQ 357
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+WG + +L N GHD HPPI P K S+ + + D +KLY+ +
Sbjct: 358 NSTEWGDEVREILSRGV----NRPKQGHDAGDHPPITPMK-SATRNEFDSDSWKLYDYIT 412
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTY 478
RHF+ +++ T I I E+F+ +G+ +L + V +W L ++P
Sbjct: 413 RHFIGTLARDCKYLSTTATIAINEEIFTVTGKTLLDPGFTSVM---TWQALDKNEIVPNL 469
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
+ + L T PP L+EA+L++ M+ GIGTDA++ HI + R Y
Sbjct: 470 TENESVPIKDMRLTEHQTSPPDYLTEAELITLMETHGIGTDASIPVHINNICQRNYVTVT 529
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
A + PT +G LV GY + EL P +RS +E + +++G + VL + ++ K
Sbjct: 530 AGRKLKPTTLGIVLVHGYQKIDAELVLPTMRSAVEEQLNLIALGKANFQAVLRHTVEIFK 589
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F VK ++ M FE A+G+ +CG C+
Sbjct: 590 LKFQYF----VKNIDGMDQLFE--VSFSPLSASGKAHSRCGKCR 627
>gi|410928142|ref|XP_003977460.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Takifugu rubripes]
Length = 713
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/601 (38%), Positives = 336/601 (55%), Gaps = 18/601 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILSK R+G + +YE+ S GQ H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSKG-NCSSRKGLNGACSVYEYTGSFLGQAAHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K ++ K L+ EA+ C ++VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMIKFLQVEAKGCCYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLR-----RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ + V R RA+FS++ D +I +A+ +L DPNQ A AVDAR
Sbjct: 122 GENICFEVLDAIQPVMNQGSTREKSVYRAKFSSITDTDICKAMNSLGDPNQNEALAVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ ++
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKA 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + K ++ T W R +FD + + A V V ++EK+K
Sbjct: 238 ETYWILQAKVFKGKDNPLTLDWSRVRVFDREVGQMFINLTKTSREAQVVSVSKKEKVKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS+ M +HTM++AE LY G+ISYPRTET + +L +++Q
Sbjct: 298 PQALNTVEMLRVASQALGMGPQHTMQIAERLYVQGYISYPRTETTHYPENFDLKAALKQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
W + LL + GL N G D HPPI P + S+ E+ D ++LYE +
Sbjct: 358 SNSSMWAEEVKALL--SGGL--NRPRKGSDAGDHPPITPMR-SASEAELGSDGWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VSQ +T ++ I E FS +G+ +++ + + ++S +P
Sbjct: 413 TRHFIATVSQDCRYLQTTIDFLIGTEAFSCTGKTLISAGFTALMPWQSIPLEESLPACER 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + L T+PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDVFTVDEIKLVEKQTKPPDYLTEAELITLMEKHGIGTDASIPVHINNICLRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY EL P +RS +E + +++G + VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKTDAELVLPTIRSAVEKQLNLIALGRANFQQVLQHTLDIFKRK 592
Query: 601 F 601
F
Sbjct: 593 F 593
>gi|156393418|ref|XP_001636325.1| predicted protein [Nematostella vectensis]
gi|156223427|gb|EDO44262.1| predicted protein [Nematostella vectensis]
Length = 856
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 350/642 (54%), Gaps = 28/642 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A LS N + R+G + ++E++ S R +P MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKFLS-NGRMNSRKGLNGACSVHEYSGSFRNEPVKFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF +Y W + DP +L+ A K +K + K L EA+ +LVLWLDCD+EG
Sbjct: 62 MSLDFHHKYNNWDAVDPLELFTATTLKKEATEKLQMPKFLSHEAKGVDYLVLWLDCDKEG 121
Query: 129 ENIAFEVIEVCR-AVN---CHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
ENI FEV+E R ++N + RA+FSA+ +++I A+Q L PN+ + +VDARQE
Sbjct: 122 ENICFEVMECVRNSMNKRPGEQTVFRAKFSAITEKDIAGAMQKLGQPNKNESLSVDARQE 181
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRFQT +N + D + ++SYGPCQ PTLGF VER+ +IQ+ + E
Sbjct: 182 LDLRIGCAFTRFQTKYFQNKY----GDLDSALISYGPCQTPTLGFCVERHDQIQSFKPEA 237
Query: 245 FWTINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+W I G + W R +FD A++ + + A VT + + +K K P
Sbjct: 238 YWVIKPKVVHSSGQSVVLDWDRVRVFDKEIALVFQKTIKESSNAQVTCISKTQKTKQRPQ 297
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q G
Sbjct: 298 ALNTVEMLRLASSGLGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGALKQQSG 357
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG + + LLD A R GHD HPPI P + +S ES D ++LY+ + R
Sbjct: 358 SAMWGSHVRELLDGAMTKPRK----GHDAGDHPPITPMRCAS-ESELGGDPWRLYDFITR 412
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV----IPTYV 479
HFLA +S +T V+ I E FS +G+ + + V +W + +P +
Sbjct: 413 HFLATLSPDCKYLQTTVKFKIGKEAFSFTGKAVTDPGFTSVM---TWQAISDDERMPPFN 469
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G + LD T PP L+E++L++ M+K GIGTDA++ HI + +R Y +
Sbjct: 470 KGDICQVAEVKLDERQTLPPDFLTESELITLMEKHGIGTDASISVHINNICERNYVQIQS 529
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
+ APT++G LV GY + EL P +RS +E + ++ G KAD A L
Sbjct: 530 GRKLAPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIAHG---KADFNA-VLHHAIG 585
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
F VK + +M FE +G+ + +CG C
Sbjct: 586 IFTQKFTYFVKTVSSMDELFE--VSFTPLSESGKPLSRCGKC 625
>gi|449498877|ref|XP_004160658.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus]
Length = 864
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 229/634 (36%), Positives = 358/634 (56%), Gaps = 25/634 (3%)
Query: 12 NVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
VAEKPS+A S+A LS Q + R+G + +++EF+ G + +TSV GH+ +
Sbjct: 5 TVAEKPSIALSIASALSHGQ-MSTRKGST---EVHEFDGRFLGHHAYYKVTSVIGHVFSI 60
Query: 72 DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENI 131
DF ++ W S DP DL+ A V K K I + L EAR C LVLWLDCDREGENI
Sbjct: 61 DFQAGFQDWKSTDPLDLFQASVIKTESNPKAHICQHLSREARGCDCLVLWLDCDREGENI 120
Query: 132 AFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
FEVIE C + + RARFS++ +++I +A+ NLV+PN+ A AVDARQEIDL+
Sbjct: 121 CFEVIE-CSGFGGNGTRKKVYRARFSSVTEKDILKALDNLVEPNRNEALAVDARQEIDLK 179
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
+G +FTRFQT + + + D R ++SYGPCQ PTLGF V+R+ +I + E+FW++
Sbjct: 180 VGVAFTRFQTTFFQGKYGN--LDSR--LISYGPCQTPTLGFCVQRHLQITTFKPEKFWSV 235
Query: 249 NCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
C + + G W RG LFD + + +++ A VT++ ++++ K P L+T
Sbjct: 236 -CPYILQTGYELNLDWERGKLFDCDVTAMFQKRVIEDGIAEVTEISEKQENKVRPSGLNT 294
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ L K AS + M++AE LY GFISYPRTE+ ++ S + G + + +P+W
Sbjct: 295 VNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLHTLVKNPEW 354
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G Y + LL + P SG D HPPI P ++ E +D ++LY+ V +HF+
Sbjct: 355 GDYVRMLLSDG---YSKPRSGT-DVGDHPPITPMCLAT-EDMLGRDAWRLYQYVCQHFIG 409
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
+S T ++ +IAGE+F+ +G + K + + + + +P ++ G++
Sbjct: 410 SLSSDCKYIRTKIQFSIAGEIFNCTGSRVTVKGFTSIMPWLAVNEKKLPQFLKGEKIEVA 469
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+ L G T PP LSE++L+S M+K GIGTDA++ HI + +R Y A R PTN
Sbjct: 470 RVDLYQGNTTPPDYLSESELISLMEKHGIGTDASIPVHINNIGERNYVQVQAGRRLVPTN 529
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G L+ GY + +L P++RS +E + V+ G + V+ + LQQ + + +K
Sbjct: 530 LGITLIRGYQCIDPDLCLPDIRSFIEHQITLVAKGQADHSSVVQSVLQQFRQKY-SYFVK 588
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
K+ ++A+ F ++S D +G + +CG C
Sbjct: 589 KIDHMDAL--FEAQFSPLAD---SGRALSKCGKC 617
>gi|355570227|gb|EHH25612.1| hypothetical protein EGK_21503 [Macaca mulatta]
Length = 862
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 347/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAYGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ L+ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTALSPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVSVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|348543167|ref|XP_003459055.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Oreochromis
niloticus]
Length = 858
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 241/644 (37%), Positives = 346/644 (53%), Gaps = 30/644 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+VL VAEKPS+A+++A ILSK R+G + ++E+ +GQ H MTSV GH+
Sbjct: 3 SVLMVAEKPSLAQAIAKILSKGNCTS-RKGLNGACSVHEYTGIFQGQTVHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K ++ K L+ EAR +VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEARGSDCVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
GENI FEV++ + V R RA+FS++ D +I A+ L +PN+ A +VDARQE
Sbjct: 122 GENICFEVLDAIQPVMNKGSARSVYRAKFSSITDTDIWNAMNRLGEPNRNEALSVDARQE 181
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 182 LDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPET 237
Query: 245 FWTINCSHKSE---EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+W I + E T W R +FD + + A V V ++EK K
Sbjct: 238 YWVIQTKVNHDLRKESPLTLDWNRVRVFDREVGQMFVNLAKTSREAQVELVSKKEKTKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PQALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPVNFDLKGTLKQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL + G+ N G D HPPI P ++ E+ D ++LYE +
Sbjct: 358 TNNPFWAEEVKVLL--STGI--NQPRKGTDAGDHPPITPM-CAATEAELGSDSWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPT 477
RHF+A VSQ +T +E +I E FS SGR +++ Y V W G+ IP
Sbjct: 413 TRHFIATVSQDCKYLQTTIEFSIGTEAFSCSGRTLISPGYTTVM---PWQGIPLEESIPV 469
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
HG F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 470 CEHGDTFSVDEIKLIEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTV 529
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
++ + PTN+G LV GY + EL P +RS +E + ++ G + VL + L
Sbjct: 530 ESGRKLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKANYQQVLQHALDIF 589
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
K F + E M + F + A G+ + +CG C
Sbjct: 590 KRKFHYFVDSITNMDELMEVSFSPIA------ATGKPLSRCGKC 627
>gi|395862158|ref|XP_003803330.1| PREDICTED: DNA topoisomerase 3-beta-1 [Otolemur garnettii]
Length = 862
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 234/642 (36%), Positives = 350/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ +L +P+ A +VDAR
Sbjct: 122 GENICFEVLDTVLPVMNKAHGGEKTVFRARFSSITDTDICNAMAHLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + + E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNLTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P + S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADSVKRLL--AEGI--NRPRKGHDAGDHPPITPMR-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SGR +++ + +V ++S +PT
Sbjct: 413 TRHFIATVSHDCRYLQSTISFRIGPELFTCSGRTVISPGFTEVMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GNTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNVCQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL++ L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVERQLNLIAQGKADYRQVLSHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|297716768|ref|XP_002834672.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 2 [Pongo abelii]
gi|297716770|ref|XP_002834673.1| PREDICTED: DNA topoisomerase 3-beta-1 isoform 3 [Pongo abelii]
Length = 862
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKQLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|302656146|ref|XP_003019829.1| hypothetical protein TRV_06117 [Trichophyton verrucosum HKI 0517]
gi|291183601|gb|EFE39205.1| hypothetical protein TRV_06117 [Trichophyton verrucosum HKI 0517]
Length = 622
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 232/638 (36%), Positives = 344/638 (53%), Gaps = 64/638 (10%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKP++AK I+ G+ EG ++Y K YEF+++ G P C ++MTSV G
Sbjct: 5 ILCVAEKPAIAKGQTNIVLYKSGI---EG-NQYVKNYEFDFTF-GPPWGSCSVVMTSVLG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL DF+ RYR W+SC+P+ L+ A V V ++K I + ++ +AR + L +W DCDR
Sbjct: 60 HLTASDFEPRYRNWNSCNPSQLFAANVIIAVDKEKLGIARNIKRQARDSRALFIWTDCDR 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE+I EV + N + ++RARFS + +A + ++ DAV AR E+D
Sbjct: 120 EGEHIGSEVRDQAVLGNPSIEIKRARFSNTERTHVLEAARRPTGLDERQVDAVAARIELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTR QT+ L+ + ++ ++SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 180 LRIGAAFTRLQTLQLQT--LGGALAEK--IISYGSCQFPTLGFVVDRYMRVKNFKPEAFW 235
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+I SH + T F+W RGHLFD + V+++E C+ ATVTKV ++ K+ P PL+
Sbjct: 236 SIKVSHTRDGITVNFNWQRGHLFDRAAVVVLFERCLAAKIATVTKVNKKPTSKWRPLPLT 295
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L+ S+Y R+ S+ MK F + +L +V++Q
Sbjct: 296 TVDLQMMGSKYLRIDSQAIMK--------------------FDNEIDLKKLVEKQYPSEA 335
Query: 367 WGPYAQRLL-------------DHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQD 413
WG YA+ + G ++ P G ++DKAHPPIHP + S + + +
Sbjct: 336 WGEYARGSVFSTNTILAEFHTNPSRCGGFKQPRRGRNNDKAHPPIHPVAYVS-PTVLNAN 394
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GG 472
K+YE V R FLAC S+ A G T +EI E F T G V+L +NYLDVY ++ W
Sbjct: 395 EEKVYEFVTRRFLACCSEDAEGESTDIEIQYGDEEFHTRGLVVLERNYLDVYVYDKWESS 454
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+P +V + F P + G T P L+E +L+ MD GIGTDATM +HI K+ R
Sbjct: 455 QPLPNFVLNESFEPKEANITEGKTVAPGYLTEPELIGLMDANGIGTDATMAEHISKIKAR 514
Query: 533 FYAIKDANT----------RFAPTNIGEALVMGYDDMGY------ELWKPNLRSMMESDM 576
Y F PT +G ALV GYD++ L KP LR ME M
Sbjct: 515 EYVATRPRGGGRGSGGRVDEFIPTKLGVALVEGYDNVVAGLPDCPSLTKPFLRKEMELRM 574
Query: 577 KEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
++ G K+KA+V+ + F + ++++LL+
Sbjct: 575 GDICSGTKTKAEVVRQNVGMYSEVFTHTQ-QRIELLKV 611
>gi|291190792|ref|NP_001167403.1| DNA topoisomerase 3-beta-1 [Salmo salar]
gi|223648214|gb|ACN10865.1| DNA topoisomerase 3-beta-1 [Salmo salar]
Length = 857
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 238/644 (36%), Positives = 340/644 (52%), Gaps = 30/644 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILSK R+G + ++E+ + GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSKG-SCSSRKGLNGACSVHEYMGTFSGQSVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFTKAPTEKKEANPKLNMVKFLQVEGKGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ R + RA+FS++ D +I A+ L +PN+ A +VDAR
Sbjct: 122 GENICFEVLDAIEPVMNRPYGSERTVYRAKFSSITDTDIWAAMNKLGEPNRNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W I K +E T W R +FD + M A V V ++EK K
Sbjct: 238 ETYWVIQAKVFKGKESPLTLDWDRVRVFDREVGQMFVNMTKTSREAKVESVSKKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +HTM++AE LY G+ISYPRTET+ + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHTMQIAERLYTQGYISYPRTETNHYHDNFDLKGTLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL R G D HPPI P + +S E D ++LYE +
Sbjct: 358 ANNPFWAQEVKALLSEGLNRPRK----GADAGDHPPITPMRAAS-EGELGSDGWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPT 477
VRHF+A VSQ +T + IA E FS SG+ +++ + +V W G+ +P
Sbjct: 413 VRHFIATVSQDCKYLQTTISFTIASEGFSCSGKTLISPGFTEVM---PWLGIPLEEAMPV 469
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G F + L T PP L+EADL++ M+K GIGTDA++ HI + R Y
Sbjct: 470 CERGDVFTVEEIKLVERQTCPPDYLTEADLITLMEKHGIGTDASIPVHINNISQRNYVTV 529
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
+ + PTN+G LV GY EL P +R +E + ++ G + VL + L
Sbjct: 530 ENGRKLKPTNLGIVLVHGYYKTDAELVLPTIRGAVEKQLNLIAQGKANYQQVLQHTLDIF 589
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
K F + E M + F + A G+ + +CG C
Sbjct: 590 KRKFHYFFDTIASMDELMEVTFSPIA------ATGKPLSRCGKC 627
>gi|325189814|emb|CCA24294.1| PREDICTED: DNA topoisomerase 3beta1like isoform 1 putative [Albugo
laibachii Nc14]
Length = 928
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 226/641 (35%), Positives = 349/641 (54%), Gaps = 28/641 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEKPS+A S+A LS ++ R G++ I+E N S + PC +TSVTGH+
Sbjct: 3 TILMVAEKPSIAASIAKALSDDRAYDTRSGKT---PIFELNSSFKSVPCLYKITSVTGHM 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF Y W + DP L+ A K + + K + + L++EAR L+LWLDCDREG
Sbjct: 60 YSCDFPSAYSNWDTVDPESLFQASTEKKL--ESKGLHQQLQKEARGADTLILWLDCDREG 117
Query: 129 ENIAFEVIEVCR-----AVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
ENI FEVIE R A + ++ RA+FSA+ ++I A++ LV PN + AVD
Sbjct: 118 ENICFEVIETVRDRMQNAASLKFKEPLILRAKFSAVTKKDIQHAMETLVAPNIHESWAVD 177
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
ARQE+DL++G +F+RFQT + + D D NLV SYGPCQ PTLGF V+R+ +IQ
Sbjct: 178 ARQELDLKVGVAFSRFQTRYFQGRYGDL---DSNLV-SYGPCQTPTLGFCVDRFDQIQQF 233
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+ E FWTI + T W RGH+FD+ + + E+ + V+ V++ E ++
Sbjct: 234 QPEPFWTIEVGITKDNQTIKLDWDRGHIFDHEAVCALNEVISDKNILLVSSVKESEVTRF 293
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P PL+T++L + AS+ M TM++AE LY G+ISYPRTE+ S+ ++ + +
Sbjct: 294 RPTPLNTVQLLQHASKQLSMGPFTTMQIAERLYLQGYISYPRTESTSYPDSFDVESTLLQ 353
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
+ WG Y + LL ++ P G D HPPI P + + + + +LY+
Sbjct: 354 HTRNSHWGTYVENLLHRG---YQRPKKGV-DVGDHPPITPVRAVELKD-LAGEMARLYDF 408
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
+ R+F+A VS+ A T V E FS +G +L K + ++ S ++P +
Sbjct: 409 IARYFIATVSRDARLLATSVSFTCQTEKFSLTGHRVLDKGFTEILTSTSLVDTIVPDFKV 468
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G+ + G T PP L+E++L+ M+K GIGTDA++ HI + +R Y +
Sbjct: 469 GEVLPIARQNVRQGQTSPPGFLTESELIGLMEKHGIGTDASIPAHINNICERNYVRLGSG 528
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
PTN+G LV GY + EL P +R+ +E ++ G SK +V+ + LQ +A
Sbjct: 529 RTLVPTNLGVVLVHGYYKVDPELVLPRVRAAIEEQCTLIAKGIASKEEVVEHSLQIFRAK 588
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
F ++K+ +++A+ FE + A G+ + +CG C
Sbjct: 589 FA-YFVRKISMMDAL---FE--ATFSPLAATGKPLSKCGKC 623
>gi|158255430|dbj|BAF83686.1| unnamed protein product [Homo sapiens]
Length = 862
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 347/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + +V ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GI TDA++ HI + R Y ++
Sbjct: 473 GDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGICTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|348585379|ref|XP_003478449.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cavia porcellus]
Length = 862
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 232/642 (36%), Positives = 343/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
V VAEKPS+A+S+A ILS+ G+ +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVFMVAEKPSLAQSIAKILSRG-GMSSHKGLNGACSVHEYMGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V N + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKTHNGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + E + + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNVEKDKSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGCLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL R GHD HPPI P + S+ E D ++LYE +
Sbjct: 358 ANHPYWADTVKQLLTEGINRPRK----GHDAGDHPPITPMR-SATEDELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVISPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVSVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|335301482|ref|XP_003359220.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sus scrofa]
Length = 859
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 230/642 (35%), Positives = 350/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E+ + GQP H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIARILSRGN-MSSHKGLNGTCSVHEYTGTFAGQPVHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ +L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNQAHGSEKTVFRARFSSITDTDICNAMAHLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDQDRSLLLDWDRVRVFDREIAQMFLNMTKPEKEAQVEATSKKEKTKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQTAERLYTQGYISYPRTETTHYPESFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P + S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKQLL--AEGI--NRPRKGHDAGDHPPITPMR-SATEAELGGEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCRYLQSTISFRIGPERFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y + ++
Sbjct: 473 GDTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVVVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|168067110|ref|XP_001785468.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662910|gb|EDQ49709.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 869
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 231/641 (36%), Positives = 348/641 (54%), Gaps = 31/641 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+VL VAEKPS+A S+A LS + R Y +++EF+ S RG +TSV GH+
Sbjct: 4 SVLMVAEKPSIALSIANFLSHGR----MSSRRSYLEVHEFDGSFRGTSVRFKVTSVIGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ +DF +Y+ W + DP +L+ AP K+ K + K L++EAR C +LVLWLDCDREG
Sbjct: 60 LSIDFPPKYQSWDTTDPFELFEAPTIKNESNPKAHVCKHLQQEARGCDYLVLWLDCDREG 119
Query: 129 ENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
ENI FEV+E V R + V R A+FSA+ ++++ A+ L +PN+ + +VDARQE
Sbjct: 120 ENICFEVMESAVPVLRKLPGQQVFR-AKFSAISEKDVRVAMNTLGEPNKDESLSVDARQE 178
Query: 185 IDLRIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
IDL++G +FTRFQT K ++DS V+SYGPCQ PTLGF VER+ I
Sbjct: 179 IDLKVGVAFTRFQTRYFQGKYGNLDSS------VISYGPCQTPTLGFCVERHLRITTFVP 232
Query: 243 EEFWTINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+ FW + H S+ G W R LFD A++ ++ + + V V ++E K
Sbjct: 233 QPFWVVR-PHLSKGGHQLMLEWDRNRLFDREVAMLFQKLVLDAKSVRVADVVKKEDRKTR 291
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P+ L+T+++ K AS M HTM++AE LY G++SYPRTE+ ++ + ++ +
Sbjct: 292 PHGLNTVDMLKVASSALNMGPHHTMQIAERLYTQGYLSYPRTESTAYPASYDIREALSIH 351
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP WG YA L+ L +P G D HPPI PT+ ++ D ++LYE V
Sbjct: 352 RNHPIWGDYASSLM----SLGPHPPKSGVDVGDHPPITPTRSATESELGGGDSWRLYEYV 407
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
RHFL VS T + GE F SGR + + + V + + +P G
Sbjct: 408 TRHFLGSVSPDCKYTRTKITFTAGGEKFFASGRTVTSAGFTAVMPWLAVSDESLPLISAG 467
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ T + L G T P L+E++L++ M+K GIGTDA++ HI + +R YA +
Sbjct: 468 ELIPMTDVELYQGRTSAPDYLTESELITLMEKHGIGTDASISVHINNICERNYAQVQSGR 527
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PT +G LV GY + +L P++R+ +E + ++ G + V+ + LQ+ A F
Sbjct: 528 RLVPTPLGITLVRGYQVIDVDLCLPDIRAFIEKQITLIAKGQAEYSRVVRHVLQEFAAKF 587
Query: 602 LDARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
V +E M FE ++S D +G+ + +CG C
Sbjct: 588 ----AYFVAQIEIMDTLFEAQFSPLAD---SGKPLSKCGKC 621
>gi|401409598|ref|XP_003884247.1| putative DNA topoisomerase III alpha [Neospora caninum Liverpool]
gi|325118665|emb|CBZ54216.1| putative DNA topoisomerase III alpha [Neospora caninum Liverpool]
Length = 870
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/447 (46%), Positives = 272/447 (60%), Gaps = 34/447 (7%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
G + VLNVAEKPSVAK + +L+ + +SR+N +++F +S++ + C ML TSV
Sbjct: 3 GDRLTVLNVAEKPSVAKEASRLLAG--AYQNAPSQSRFNPVHQFEFSLQNRSCTMLFTSV 60
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHLM L+F Y+ W++ P DLY APV K + +D D++K L + A++ QWLVLWLDC
Sbjct: 61 RGHLMSLEFASAYQNWNTTPPEDLYSAPVEKSISQDAGDVQKNLVDLAKKAQWLVLWLDC 120
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENIAFEV+ VC N L + RA FSAL ++ +A ++L P++ +DAVD R E
Sbjct: 121 DREGENIAFEVLSVCSKANSRLKVFRAVFSALTKADLERACRSLQAPDRNQSDAVDTRSE 180
Query: 185 IDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
IDLRIGASFTRF TM + + S T +SYGPCQ PTLGFVV R+ E++ E
Sbjct: 181 IDLRIGASFTRFLTMRYRTRVKLPSPT------ISYGPCQSPTLGFVVSRFVEVENFVRE 234
Query: 244 EFWTINCSHKS---EEG------TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
+WTI + E+G + F+W R LFD + +++YEMC++ P ATVT VR
Sbjct: 235 AYWTIRVTINKLDDEKGPNAPPLSVDFTWDRQRLFDQLAVLVLYEMCLENPVATVTDVRG 294
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
E+ K P PL T+EL K ASR RMSS M +AE LYQ G ISYPRTET+ FS +L
Sbjct: 295 TERTKPRPVPLCTVELHKMASRKLRMSSAQCMSIAESLYQRGIISYPRTETEVFSPTMDL 354
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
+++ G WG YAQ+L++ LW P G DDKAHPPIHP K +D
Sbjct: 355 LALIRVHTGSTAWGAYAQKLVE-GDFLW--PRDGARDDKAHPPIHPLKLMQRSEFEKEDE 411
Query: 415 YK-------------LYELVVRHFLAC 428
+K LYE + RHFLAC
Sbjct: 412 WKTKVNSGGLCTRLQLYEFITRHFLAC 438
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM----GYELWKPNLRS 570
GIGTDATMHDHI+ + DR Y K+ N +F PT++G AL G+ + G +L P+LR+
Sbjct: 531 GIGTDATMHDHIRTIQDRHYCYKNENMQFVPTDLGVALYQGFKRLAEVSGVDLSLPDLRA 590
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
ME+DM V+ G K+K +VL L +M+ FL
Sbjct: 591 RMEADMALVARGAKTKQEVLDIHLSEMRRVFL 622
>gi|326667668|ref|XP_003198651.1| PREDICTED: DNA topoisomerase 3-beta-1 [Danio rerio]
Length = 861
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 234/644 (36%), Positives = 345/644 (53%), Gaps = 30/644 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILSK R+G + ++E+ S GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSKG-SCSTRKGLNGACSVHEYMGSFTGQNVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K ++ K L+ EA+ C ++VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEAKGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ + V + RA+FS++ D +I A+ L +PN+ A +VDAR
Sbjct: 122 GENICFEVLDAIQPVMNKPYGNERTVYRAKFSSITDTDICNAMNRLGEPNKNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + K ++ T W R +FD + M A V V ++EK K
Sbjct: 238 EAYWVVQAKVFKGKDSPLTLDWDRVRVFDRDIGQMFVNMAKTAKEARVDSVTKKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLKQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
WG + LL R G D HPPI P + +S E+ D ++LY+ +
Sbjct: 358 ANSTFWGETVKALLSEGINRPRK----GADAGDHPPITPMRAAS-ENELGSDGWRLYDYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPT 477
RHF+A VS +T + +IA E F+ SG+ +++ Y +V W G+ +P
Sbjct: 413 TRHFIATVSPDCKYLQTTISFSIATEGFTCSGKTLISAGYTEVM---PWQGIAQEEALPV 469
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G+ F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 470 CERGEMFTVDEIKLLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTV 529
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
++ + PTN+G LV GY + +L P +RS +E + +++G + VL + L
Sbjct: 530 ESGRKLKPTNLGIVLVHGYYKIDADLVLPTIRSAVEKQLTLIALGKANFQQVLQHTLDIF 589
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
K F + E M + F + A G+ + +CG C
Sbjct: 590 KRKFHYFVDSIAGMDELMEVSFSPIA------ATGKPLSRCGKC 627
>gi|291406914|ref|XP_002719771.1| PREDICTED: topoisomerase (DNA) III beta [Oryctolagus cuniculus]
Length = 863
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 238/649 (36%), Positives = 347/649 (53%), Gaps = 37/649 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR-------GQPCHMLM 61
VL VAEKPS+A+S+A ILS R S + + +S R GQP M
Sbjct: 3 TVLMVAEKPSLAQSIAKILS-------RGNMSSHKGLNGACFSARVPLDTSAGQPVRFKM 55
Query: 62 TSVTGHLMELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
TSV GH+M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VL
Sbjct: 56 TSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVL 115
Query: 121 WLDCDREGENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWF 175
WLDCD+EGENI FEV++ +A + RARFS++ D +I A+ L +P+
Sbjct: 116 WLDCDKEGENICFEVLDAVVPVMNKAHGGEKTVFRARFSSITDTDICNAMARLGEPDHNE 175
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A +VDARQE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+
Sbjct: 176 ALSVDARQELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHD 231
Query: 236 EIQAHESEEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
+IQ+ + E +W + + ++ + W R +FD A + M QE A V +
Sbjct: 232 KIQSFKPEAYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQMFLNMTKQEKEAQVEATSR 291
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
+EK K P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L
Sbjct: 292 KEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDL 351
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
G +++Q HP W +RLL A G+ N GHD HPPI P + S+ E+ D
Sbjct: 352 KGCLRQQANHPYWADTVKRLL--AEGV--NRPRKGHDAGDHPPITPMR-SATEAELGGDA 406
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GL 473
++LYE + RHF+A VS +T + + I E+F+ SG+ +L+ + ++ ++S
Sbjct: 407 WRLYEYITRHFIATVSHDCKYLQTTISLRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEE 466
Query: 474 VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRF 533
+PT G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R
Sbjct: 467 SLPTCQRGDTFAVAEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRN 526
Query: 534 YAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
Y ++ R PTN+G LV GY + EL P +RS +E + ++ G VL +
Sbjct: 527 YVTVESGRRLKPTNLGVVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHT 586
Query: 594 LQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
L K F + E M + F + A G+ + +CG C
Sbjct: 587 LDIFKRKFHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 629
>gi|255550676|ref|XP_002516387.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
gi|223544485|gb|EEF46004.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
Length = 865
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 234/639 (36%), Positives = 351/639 (54%), Gaps = 25/639 (3%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
P VL VAEKPS+A S+A LS Q + G +++EF+ G H +TSV G
Sbjct: 3 PPVVLMVAEKPSIALSIASALSHGQMSSKKGG----TEVHEFDGMFLGFQAHYKVTSVIG 58
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF ++Y+ W + DP DL+ AP+ K K I++ L +EAR C LVLWLDCDR
Sbjct: 59 HIFSVDFPQKYQDWTANDPMDLFQAPIVKAESNPKVHIRRHLSQEARGCGHLVLWLDCDR 118
Query: 127 EGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGENI FEVIE C + + R RARFS++ +++I +A+ NLV PN+ A AVDARQ
Sbjct: 119 EGENICFEVIE-CTGFHLNDSRRRVYRARFSSVAEKDILKAMDNLVQPNRDEALAVDARQ 177
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
EIDL++G +FTRFQT + + + D R V+SYGPCQ PTLGF V+RY +I + E
Sbjct: 178 EIDLKVGVAFTRFQTSFFQGKYGN--LDSR--VISYGPCQTPTLGFCVQRYLQIATFKPE 233
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+FW++ + W R LFD A++ + +Q+ V + Q+++ K P
Sbjct: 234 KFWSLRPHLIIDGYQLQLEWERHRLFDLDVALMFQKQVLQDGILEVIDISQKQETKGRPS 293
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+ L K AS + M++AE LY GFISYPRTE+ ++ S + I+ +
Sbjct: 294 GLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKSILSTLLN 353
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+ WG +RLL + P G D HPPI P + ++ E +D ++LY+ V +
Sbjct: 354 NSIWGDSVRRLLVEG---YHKP-RLGTDAGDHPPITPIRLAT-EDMLGKDAWRLYQYVCQ 408
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HF+ VS T VE ++ GE F G+ ++ + + + + + +P V G++
Sbjct: 409 HFIGSVSPDCKYVRTKVEFSVGGEFFHCIGQHVIVEGFTSIMPWLAVTEKNLPQLVKGEK 468
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ L G T PP L+E++L+S M+K GIGTDA++ HI + +R Y A R
Sbjct: 469 IEVLRMELLEGKTTPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRRL 528
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
APT +G L+ GY + +L P++RS +E + V+ G + V+ + LQQ K F
Sbjct: 529 APTILGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQADHSRVVQHVLQQFKQKF-- 586
Query: 604 ARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
VK ++ M FE ++S D +G + +CG C
Sbjct: 587 --TYFVKQIDNMDALFEAQFSQLVD---SGRALSKCGKC 620
>gi|242045216|ref|XP_002460479.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
gi|241923856|gb|EER97000.1| hypothetical protein SORBIDRAFT_02g029000 [Sorghum bicolor]
Length = 866
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 223/634 (35%), Positives = 348/634 (54%), Gaps = 21/634 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A S+A LS + + R+G + ++EF+ + +G + +TSV GH+
Sbjct: 4 KVLMVAEKPSIALSIASALSGGR-MSTRKGST---DVHEFDGTFQGSYANFKVTSVIGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ +DF Y+ W + DP DL+ APV + K I++ L +EAR C +L+LWLDCDREG
Sbjct: 60 LSVDFPPAYQNWEATDPLDLFEAPVLRSECNPKAHIRRHLAQEARGCTYLILWLDCDREG 119
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI +EVIE + + RARFS++ +++I A+ NLV PN+ A +VDARQEIDL+
Sbjct: 120 ENICYEVIECTGIPDNGRRIFRARFSSVTEKDILTAMDNLVLPNKDEALSVDARQEIDLK 179
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
+G +FTRFQT + + + D R V+SYGPCQ PTLGF V+RY +I + E+FW++
Sbjct: 180 VGVAFTRFQTRYFQGKYGN--LDSR--VISYGPCQTPTLGFCVQRYQQITTFKPEKFWSL 235
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ W R LFD+ V+ +M + + + V V +E+ K P L+T+
Sbjct: 236 KTYIIKDSDEIQLEWDRKKLFDFDVTVMFQKMVISDGSLKVADVSVKEECKTRPSGLNTV 295
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
+ K AS + + M +AE LY GFISYPRTE+ ++ S + G + + +P W
Sbjct: 296 NMLKVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFRGALAALLNNPLWS 355
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+ LLD AG + GHD HPPI P + S+ E+ D ++LY+ + +HF+
Sbjct: 356 NDVRTLLD--AGFVKP--RQGHDAGDHPPITPMR-SATEAALGTDAWRLYQYICQHFIGT 410
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
VS T +E GE F G + +K + + + + +P + G
Sbjct: 411 VSPDCRYTRTAIEFTSGGETFHCVGYRVTSKGFTSIMPWLAISENSLPAFKKGDSVSIHK 470
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP L+E++L+S M+K GIGTDA++ HI + +R Y ++ R PT +
Sbjct: 471 VDIYEGSTTPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVNSGRRLVPTPL 530
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G L+ GY + +L P++RS +E + ++ G V+ + +QQ F+
Sbjct: 531 GTTLIRGYQCIDADLCLPDIRSFIEQQITLIAKGKADHLRVIQHVIQQ----FMKKYSYF 586
Query: 609 VKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
VK +E M FE ++S D +G ++ +CG C
Sbjct: 587 VKKIENMDALFEAQFSPLAD---SGRLLSKCGKC 617
>gi|260805074|ref|XP_002597412.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
gi|229282677|gb|EEN53424.1| hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae]
Length = 858
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 236/647 (36%), Positives = 344/647 (53%), Gaps = 35/647 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS L+ R+G + ++E+ G+ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAQILSGG-SLKSRKGINGACSVHEYTGKFHGESVKFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF Y W DPADL+ AP K + K LE E R LVLWLDCD+EG
Sbjct: 62 MSLDFQGVYNNWDRVDPADLFRAPTNKKEANPNLKMPKFLELEGRGADILVLWLDCDKEG 121
Query: 129 ENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEVI+ R + R++FSA+ + +I A+ L +PN+ A +VDARQ
Sbjct: 122 ENICFEVIDAVRPSMNRPRGREQYIYRSKFSAITETDIRGAMMRLGEPNENEAMSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF V+R+ +IQ+ + E
Sbjct: 182 ELDLRIGCAFTRFQTKFFQGKYGDL---DSSLI-SFGPCQTPTLGFCVDRHDQIQSFKPE 237
Query: 244 EFWTINCSHKSEEGTAT-FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W I + + W R LFD A + A V V ++EK K P
Sbjct: 238 TYWVIQTQVSGKNNSPLWLDWDRVRLFDREVAQTFLNIVKGAKEAKVVSVTKKEKAKQRP 297
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+EL + AS M+ +HTM+VAE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 IALNTVELLRVASSSLGMAPQHTMQVAERLYTQGYISYPRTETTHYPENFDLKGTLRQQT 357
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
G+ WGP + LLD R G D HPPI P + S+ ES + +++YE +
Sbjct: 358 GNSSWGPIVRELLDKGMQKPRK----GSDAGDHPPITPMR-SATESELGGEGWRVYEYIT 412
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTY 478
HF+A VS+ +T V+ ++AGE FS +G+ ++ Y V W G+ +P +
Sbjct: 413 SHFIATVSKDCKYLQTTVKFDVAGESFSVTGKTLIDAGYTAVMH---WQGISAEESVPHF 469
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G + L T PP L+EA+L+S M+K GIGTDA++ HI + R Y
Sbjct: 470 EKGDVCTVNEVKLAEKQTSPPDYLTEAELISLMEKHGIGTDASIPVHINNICQRNYVTVG 529
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
+ PT +G LV GY + EL P++RS +E+ + ++ G + VL + L +
Sbjct: 530 GGRKLIPTPLGIVLVHGYQKIDPELVLPHMRSAVETQLNLIAQGKANYNAVLQHALDIFR 589
Query: 599 A---CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F+D+ +L E + F + A+G+ + +CG C+
Sbjct: 590 LKFHYFVDSVSDMDQLFE---VTFSPLA------ASGKPLSRCGKCR 627
>gi|403213445|emb|CCK67947.1| hypothetical protein KNAG_0A02580 [Kazachstania naganishii CBS
8797]
Length = 650
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 242/643 (37%), Positives = 346/643 (53%), Gaps = 41/643 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-----CHMLMT 62
+ VL VAEK S+AK+VA IL G + Y K Y+F + G P C + MT
Sbjct: 1 MKVLCVAEKNSIAKAVAHILGGGSSTSRGSGYT-YVKNYDFQFG--GFPFAPGSCQVTMT 57
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL +DFD W C+ +L+ APV + + +++ I + +EAR +L++W
Sbjct: 58 SVAGHLRGMDFDNARYGWGKCNIFELFDAPVSETMDRNQQLIADNIRKEARNVDYLMVWT 117
Query: 123 DCDREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
DCDREGE I +E+ + + N L L RA FS + I QA ++ + +AV
Sbjct: 118 DCDREGEYIGWEIFQAAQKGNNRLDESKLYRAVFSHVERGHILQAARSPQRLDMCSVNAV 177
Query: 180 DARQEIDLRIGASFTRF-----------QTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLG 228
R E+DLR G SFTR QT K H +V+SYGPCQFP G
Sbjct: 178 GTRIELDLRTGVSFTRLLTDTMARRVQAQTAPGKTGHQSQNRKKDKVVISYGPCQFPHFG 237
Query: 229 FVVERYWE-IQAHESEEFWTINCSHKSEE-GTATFSWMRGHLFDYTSAVIIYEMCVQEP- 285
R +E I+ EEFW I E GT TF W RGHLFD S + YE C++
Sbjct: 238 VRGGRRFERIRNFIPEEFWYIQLQLAGENTGTTTFQWERGHLFDRLSVLTFYETCLETAG 297
Query: 286 -TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTE 344
A V+ +R + KY P PL+T+EL+K +R+ R++++ ++ AE LYQ GFISYPRTE
Sbjct: 298 DRAKVSNLRSKPTAKYRPLPLTTVELQKNCARFLRINAKQSLAAAEKLYQKGFISYPRTE 357
Query: 345 TDSF--SSGTNLHGIVQEQIGHPD----WGPYAQRLL--DHAAGLWRNPGSGGHDDKAHP 396
TD+F + + L IV +G D W YA LL ++ + ++ P G HDDKAHP
Sbjct: 358 TDTFPRTMESELKKIVG-NLGGSDSDNSWSSYANELLSVNNGSNKFKFPRGGSHDDKAHP 416
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
PIHP + + ++YE VVRHFLAC S+ A G T + ++ A E+F+ +G V+
Sbjct: 417 PIHPIISLGPNANVDANEKRVYEYVVRHFLACCSEDAKGQSTTLTLDWASELFTATGLVV 476
Query: 457 LAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
L +N+LDVY + W +P Q+ + + SG T P ++E++L+S MD G
Sbjct: 477 LERNFLDVYPYAKWETTKQLPRLEINQECLLDKAEMKSGTTSTPKPMTESELISLMDANG 536
Query: 516 IGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRS 570
IGTDAT+ +HI+K+ R Y + T PT +G ALV G++ +G E KP R
Sbjct: 537 IGTDATIAEHIEKIQARNYVKSEKVGKETYLQPTTLGVALVHGFEAIGLEDSFAKPFQRR 596
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
ME D+K++ +G +K V+ + L + K + K+KLLE
Sbjct: 597 EMEEDLKKICLGQLTKPAVVQDILTKYKNYWHRTNQHKMKLLE 639
>gi|344295392|ref|XP_003419396.1| PREDICTED: DNA topoisomerase 3-beta-1 [Loxodonta africana]
Length = 862
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 231/642 (35%), Positives = 347/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
V VAEKPS+A+S+A ILS+ + +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVFMVAEKPSLAQSIAKILSRG-SMSSHKGLNGACSVHEYTGTFTGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ T W R +FD A + + E A V ++EK K
Sbjct: 238 ETYWVLQAKVNADKDRTLLLDWDRVRVFDREIAQMFLNITKMEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P K ++ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKQLL--AEGI--NRPRKGHDAGDHPPITPMK-AATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVH 480
RHF+A VS ++ + I E F+ SG+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTITFRIGPEHFTCSGKTVISPGFTEIMPWQSVPPEDNLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFAISEMKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|332000010|ref|NP_001193635.1| DNA topoisomerase 3-beta-1 [Bos taurus]
Length = 861
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 347/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E++ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIARILSRG-SMSSRKGLNGTCSVHEYSGAFEGQPARFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C +VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNQARSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQTAERLYTQGYISYPRTETTHYPESFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ V I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCRYLQSSVSFRIGPERFTCTGKAVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y I ++
Sbjct: 473 GDTLAVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVIVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGRADFRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|296478358|tpg|DAA20473.1| TPA: topoisomerase (DNA) III beta [Bos taurus]
Length = 734
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 236/641 (36%), Positives = 347/641 (54%), Gaps = 24/641 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E++ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIARILSRG-SMSSRKGLNGTCSVHEYSGAFEGQPARFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C +VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNQARSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQTAERLYTQGYISYPRTETTHYPESFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ V I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCRYLQSSVSFRIGPERFTCTGKAVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y I ++
Sbjct: 473 GDTLAVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVIVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGRADFRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKC 627
>gi|410977257|ref|XP_003995024.1| PREDICTED: DNA topoisomerase 3-beta-1 [Felis catus]
Length = 862
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/642 (35%), Positives = 344/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-NMSSRKGLNGTCSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ + + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPIMNPTHGGEKTVFRARFSSITDMDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL R GHD HPPI P + S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKRLLTEGINRPRK----GHDAGDHPPITPMR-SATEAELGSEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSYDCKYLQSTISFRIGPEHFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFAVSEIKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|325089089|gb|EGC42399.1| DNA topoisomerase III [Ajellomyces capsulatus H88]
Length = 450
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/451 (45%), Positives = 280/451 (62%), Gaps = 12/451 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR---GQPCHMLMTSVT 65
+L VAEKP++A+ VA LS + + + K YEF+++ GQ C ++MTSV
Sbjct: 4 KILCVAEKPAIARVVAQHLSGGSSRVVSIRGNVFVKNYEFDFTFAPPWGQ-CSVIMTSVI 62
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL L+FD +YR W+SC P L+ APV V +D I + + AR + L +W DCD
Sbjct: 63 GHLTSLEFDSQYRGWNSCPPGRLFDAPVVDSVAKDNLTIAENIRTLARNSKALFIWTDCD 122
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I EV R N + ++RARFS I QA N ++ + A+AV AR E+
Sbjct: 123 REGEHIGTEVRYQARKSNPRIEIKRARFSNTERAHILQAATNPIELDDSQANAVAARIEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIGA+FTR QT+ LK+ + V +DR V+SYG CQFPTLGFVV+RY+ ++ + E+F
Sbjct: 183 DLRIGAAFTRLQTLQLKS--LGGVLEDR--VISYGSCQFPTLGFVVDRYFRVKNFKPEKF 238
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
WTI SH + T F W R HL+D + VI++E C+ TA VTKV ++ K+ P PL
Sbjct: 239 WTIKVSHVRDGKTVNFLWRRVHLYDRAAVVILFERCLTSKTAKVTKVHKKPTRKWRPLPL 298
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T++L+ SRY RM S+ MK+AE LY GFISYPRTETD F G +L ++++QI
Sbjct: 299 TTVDLQMMGSRYLRMDSQKVMKIAETLYTKGFISYPRTETDQFDKGIDLKKLIEKQIPSE 358
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG YAQRL++ G + P +G H+DKAHPPIHP F++ + S D +YE V R F
Sbjct: 359 NWGQYAQRLIN---GSFTQPRAGHHNDKAHPPIHPVIFAA-PTVLSNDERLVYEFVTRRF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
LAC S+ A G T VEI E+F T G ++
Sbjct: 415 LACCSEDAKGESTEVEIKYGDEIFHTHGLLV 445
>gi|449281995|gb|EMC88926.1| DNA topoisomerase 3-beta-1 [Columba livia]
Length = 862
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/642 (36%), Positives = 345/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E+ S GQ H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSRKGLNGACSVHEYTGSFIGQSAHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K + K L+ E R C +VLWLDCD+E
Sbjct: 62 MTLDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDCIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + + RA+FS++ D +I A+ +L +PN+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKPRSTERTVYRAKFSSITDTDICNAMNHLGEPNRNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + E E + T W R +FD A + + A V V ++EK+K
Sbjct: 238 ETYWVLQAKVNPEKESSLTLDWDRVRVFDREIAQMFLNITKTAKEAKVESVSKKEKVKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASAALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGCLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL R GHD HPPI P + ++ E+ D ++LYE +
Sbjct: 358 ANNPYWAETVKALLSEGINRPRK----GHDAGDHPPITPMR-AATEAELGGDGWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS +T + +I E F+ G+V+ + + ++ + S +P
Sbjct: 413 TRHFIATVSADCKYLQTTIAFSIGPERFTCVGKVVTSPGFTEIMPWHSIALEESLPHCEK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDLFPISEIKLLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + +++G + VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIALGKANYHQVLEHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|440895796|gb|ELR47898.1| DNA topoisomerase 3-beta-1, partial [Bos grunniens mutus]
Length = 816
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 236/642 (36%), Positives = 346/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E++ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIARILSRG-SMSSRKGLNGTCSVHEYSGAFAGQPARFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C +VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNQAHSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQTAERLYTQGYISYPRTETTHYPESFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ V I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCRYLQSSVSFRIGPERFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y I ++
Sbjct: 473 GDTLAVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVIVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGRADFRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|351706851|gb|EHB09770.1| DNA topoisomerase 3-beta-1 [Heterocephalus glaber]
Length = 862
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/642 (35%), Positives = 344/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E+ + QP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SMSSHKGLNGACSVHEYTGTFDSQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHSGEKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNADKDKSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL R GHD HPPI P + S+ E D ++LYE +
Sbjct: 358 ANHPYWADTVKQLLTEGINRPRK----GHDAGDHPPITPMR-SATEDELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFQIGPELFTCSGKTVISPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|57525152|ref|NP_001006181.1| DNA topoisomerase 3-beta-1 [Gallus gallus]
gi|53132094|emb|CAG31872.1| hypothetical protein RCJMB04_12m15 [Gallus gallus]
gi|66796187|dbj|BAD99111.1| topoisomerase III beta [Gallus gallus]
Length = 862
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 234/642 (36%), Positives = 344/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E+ S GQ H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSRKGLNGVCSVHEYTGSFIGQSAHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K + K L+ E R C +VLWLDCD+E
Sbjct: 62 MTLDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDSIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + ++ RA+FS++ D +I A+ +L +PN A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKSPSTERMIYRAKFSSITDTDICNAMNHLGEPNLNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + E E + T W R +FD A + + A V V ++EK+K
Sbjct: 238 ETYWVLQAKVNPEKESSLTLDWDRVRVFDREIAQMFLNITKMAKEAKVESVSKKEKVKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASAALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGCLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL R GHD HPPI P K ++ E D ++LYE +
Sbjct: 358 ANNPYWAETVKALLSEGINRPRK----GHDAGDHPPITPMK-AATEVELGGDSWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS +T + +I E F+ G+V+ + + ++ + S +P+
Sbjct: 413 TRHFIATVSADCKYLQTNISFSIGPERFNCVGKVVTSPGFTEIMPWHSIALEESLPSCEK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + +++G + VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIALGKANYHQVLEHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|291227018|ref|XP_002733487.1| PREDICTED: topoisomerase (DNA) III beta-like [Saccoglossus
kowalevskii]
Length = 3134
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 230/641 (35%), Positives = 345/641 (53%), Gaps = 24/641 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
V VAEKP +A S+A ILS Q L R+G + ++E+ +G+P MTSV GH+M
Sbjct: 4 VFMVAEKPQLAHSLAKILSNGQ-LNSRKGFNGACSVHEYTGKFQGEPARFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDFD Y W DPA+L+ APVR+ ++K + L E++ C +L+LWLDCD+EGE
Sbjct: 63 GLDFDGSYNNWDKVDPAELFSAPVRRIEAQEKLRMPAFLSTESKGCDYLILWLDCDKEGE 122
Query: 130 NIAFEVIEVCRAVNCHLVLR-----RARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
NI FEVI+ + V R RA+FSA+ D++I A+ LV+P++ A +VDARQ+
Sbjct: 123 NICFEVIDFVQPVMNRPYGREQTVFRAKFSAITDKDIKAAMNKLVEPDKNQALSVDARQQ 182
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTR+QT + + D + ++SYGPCQ PTLGF V+R+ +IQ+ + E
Sbjct: 183 LDLRIGCAFTRYQTKFFQGKYADLDS----TLISYGPCQTPTLGFCVDRHDKIQSFKPET 238
Query: 245 FWTINCSHKSEEGTATFS--WMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + + S TFS W R LFD A + + A V + Q+EK K P
Sbjct: 239 YWVLQ-TQVSGYNNKTFSLDWERVRLFDKEVAQMFINIVKAANEAEVVNISQKEKSKQRP 297
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+EL + AS M H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 QALNTVELMRVASSGLGMGPHHAMQIAERLYIQGYISYPRTETSQYPESFDLRGTLRQQA 357
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
DWG ++LL R G+D HPPI P K +S D+++LY+ +
Sbjct: 358 SSSDWGSEVRQLLSEGISKPRK----GNDAGDHPPITPMKGASESELGGGDNWRLYDYIT 413
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG-LVIPTYVHG 481
RHF+A +S +T V+ I E FS +G+ ++ + V +++ G +P + G
Sbjct: 414 RHFIATISPECKYLQTTVKFTIGTESFSLTGKTLIDAGFTKVMPWQAIGADEKLPQFNKG 473
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ + L T PP L+E++L++ M+K GIGTDA++ HI + R Y +
Sbjct: 474 DKCAIKEVKLTERQTTPPDYLTESELITLMEKHGIGTDASIPVHINNICQRNYVSVGSGR 533
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PT +G LV GY + +L P++RS +E + ++VG K D L+ F
Sbjct: 534 RLIPTTLGIVLVHGYQKIDPDLSLPSMRSAVEEQLNLIAVG---KVD-FNTVLKHTVDIF 589
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V + M FE A+G+ + +CG C+
Sbjct: 590 TRKFQYFVTQINGMDELFE--VSFSPLAASGKPLSRCGKCR 628
>gi|387592248|gb|EIJ87272.1| hypothetical protein NEQG_02607 [Nematocida parisii ERTm3]
gi|387597411|gb|EIJ95031.1| hypothetical protein NEPG_00556 [Nematocida parisii ERTm1]
Length = 853
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 225/595 (37%), Positives = 329/595 (55%), Gaps = 21/595 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LNVAEKPSVAKS+A ILS N + +G ++Y ++ FN+ I G PC M+ TSV GH
Sbjct: 1 MRILNVAEKPSVAKSLADILS-NGRAQFSKGYNKYCSVFRFNHCIEGIPCEMVFTSVLGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L L+F ++ W DP +L+ +R +P++ D+ +TL ++ C L++W DCDRE
Sbjct: 60 LYSLEFAKK-TSWTEIDPIELFEEDIRWIIPKEMADVSRTLVHLSKDCDMLIIWTDCDRE 118
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +V + R + ++RARFS L ++ AV+NL N + + AV++R EIDL
Sbjct: 119 GENIGMQVANLVR--DRIREVKRARFSGLSKYDVMHAVENLCRLNAYESKAVESRIEIDL 176
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+ TR QT+ L+N +DS + V+SYG CQ PTLGFV ER I+ E+ WT
Sbjct: 177 RIGAALTRLQTLQLQNI-LDSKS-----VISYGSCQIPTLGFVCEREESIEEFVEEKNWT 230
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I ++ F W RG ++D A I E V KV +++ K P+PL T
Sbjct: 231 IEAEVQNNGERGVFKWERGVVYDEDYAGIKLRTISGEELV-VNKVEIKKRHKSRPWPLRT 289
Query: 308 IELEKRASRYFRMSSEHT-MKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
+EL+K +R +SS H M +AE LY +G+ISYPRTETD FSS N + G
Sbjct: 290 VELQKFFARGHGVSSSHELMNIAESLYTSGYISYPRTETDVFSSQFNYKDPLAALKGDSV 349
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
YA++L+ P +G H+D+AH PI+P K SG +YE + R FL
Sbjct: 350 LSEYAKKLVPG------RPSAGRHNDQAHTPIYPLKAGSG---LKGKERAVYEYIARRFL 400
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
AC S A G E ++E + E F ++ KNYL+++ +E WG I + Q +
Sbjct: 401 ACYSADAEGEEELIECQVKEEKFIRKMLKVIKKNYLEIFIYEKWGDTEIDLALKEGQTVK 460
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
T P LL+EA+L++ MD GIGTDAT+HDHI+++ R Y T
Sbjct: 461 WAPNKKESHTNKPHLLTEAELIAKMDSNGIGTDATIHDHIERIKTRMYIEMINKNSIRST 520
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+G +L+ GY +G + +P LR E ++K V G +D++A + + K +
Sbjct: 521 WLGRSLINGYKSIGLTINQPYLRKEFECNLKRVCSGEFPSSDLIAQEIIKYKEIY 575
>gi|357159190|ref|XP_003578369.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Brachypodium
distachyon]
Length = 868
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 224/636 (35%), Positives = 350/636 (55%), Gaps = 25/636 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A S+A +S + + R+G + ++EF+ + +G +TSV GH+
Sbjct: 5 VLMVAEKPSIALSIASAISGGR-MSTRKGST---DVHEFDGTFQGSQAFFRVTSVIGHVF 60
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF Y+ W DP DL++APV + K I++ L +EAR C +L+LWLDCDREGE
Sbjct: 61 SVDFPPAYQNWEGTDPVDLFNAPVLRSECNPKVHIRRHLAQEARGCTYLILWLDCDREGE 120
Query: 130 NIAFEVIEVCRAVNCHLVLRR---ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
NI +EVI C + + V RR A+FS++ +++I A+ NLV PN+ A +VDARQEID
Sbjct: 121 NICYEVIN-CTGIPENEVGRRIFRAKFSSVTEKDISNAMDNLVLPNKDEALSVDARQEID 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L++G +FTRFQT + + + D R V+SYGPCQ PTLGF V+RY +I + E+FW
Sbjct: 180 LKVGVAFTRFQTRYFQGKYGN--LDSR--VISYGPCQTPTLGFCVQRYQQINTFKPEKFW 235
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
++ + W R LFD+ V+ +M + T VT + +E+ K P L+
Sbjct: 236 SLRTYVIKDGDEIQLEWDRKKLFDFDVTVMFQKMVANDGTLIVTDISVKEECKARPSGLN 295
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+ L K AS + + M +AE LY G+ISYPRTE+ ++ + + ++ + +P
Sbjct: 296 TVNLLKVASSALGIGPQTAMHMAERLYTQGYISYPRTESTAYPASFDFRSVLSALVHNPL 355
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
W + L+D AG + GHD HPPI P + S+ E D ++LY+ + +HF+
Sbjct: 356 WSNNIRTLMD--AGFVK--PRQGHDAGDHPPITPMR-SASEEALETDAWRLYQYICQHFI 410
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
VS T VE GE+F G + +K + + + + +PT+ +G
Sbjct: 411 GTVSPDCRYTRTAVEFTSGGEIFRCVGHRVTSKGFTSIMPWLAVAENNLPTFKNGDTVSI 470
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ + G T PP LSE++L+S M+K GIGTDA++ HI + +R Y ++ R PT
Sbjct: 471 HKVDIYEGSTTPPDYLSESELISLMEKNGIGTDASIPVHINNISERNYVQVNSGRRLVPT 530
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G L+ GY + +L P++RS +E + ++ G V+ + +QQ F+
Sbjct: 531 ALGTTLIRGYQCIDADLCLPDIRSFIEQQITLIAKGKADHLQVIQHVIQQ----FMKKYS 586
Query: 607 KKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
VK +E M FE ++S D +G ++ +CG C
Sbjct: 587 YFVKKIENMDALFEAQFSPLAD---SGRLLSKCGKC 619
>gi|326929518|ref|XP_003210910.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Meleagris gallopavo]
Length = 862
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 235/642 (36%), Positives = 343/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E+ S GQ H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSRKGLNGACSVHEYTGSFIGQSAHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K + K L+ E R C +VLWLDCD+E
Sbjct: 62 MTLDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDCIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + + RA+FS++ D +I A+ +L +PN+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKPPSTERTIYRAKFSSITDTDICNAMNHLGEPNRNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + E E + T W R +FD A + + A V V ++EK+K
Sbjct: 238 ETYWVLQAKVNPEKESSLTLDWDRVRVFDREIAQMFLNITKTAREAKVESVSKKEKVKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASAALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGCLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL R GHD HPPI P K ++ E D ++LYE +
Sbjct: 358 ANNPYWAETVKALLSEGINRPRK----GHDAGDHPPITPMK-AATEVELGGDGWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS +T + +I E FS G+V+ + + ++ + S +P
Sbjct: 413 TRHFIATVSADCKYLQTNISFSIGPERFSCVGKVVTSPGFTEIMPWHSIPLEESLPCCEK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + +++G + VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIALGKANYHQVLEHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|73995957|ref|XP_534771.2| PREDICTED: DNA topoisomerase 3-beta-1 isoform 1 [Canis lupus
familiaris]
Length = 862
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 231/642 (35%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E++ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-NMSSHKGLNGTCSVHEYSGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNPTHSGEKTVFRARFSSITDTDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P + S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMR-SATEAELGSEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSYDCKYLQSTISFRIGPEHFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDCFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|307184245|gb|EFN70718.1| DNA topoisomerase 3-beta-1 [Camponotus floridanus]
Length = 851
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 232/639 (36%), Positives = 346/639 (54%), Gaps = 24/639 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS N R+G + ++E+ + + + MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILS-NGRCSTRKGLNGSCSVHEWVGQFKSETVNFKMTSVCGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+L+ P K K I L +E C +L+LWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPKLKIPYFLAKEGSHCDYLILWLDCDKEGEN 123
Query: 131 IAFEVIEVCRAVNCHLVLR-----RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
I FEVI + H L RARFSA+ +++I A+ NL+ PN+ A +VDARQE+
Sbjct: 124 ICFEVINAVQQ-GMHRKLHINDIWRARFSAITEKDIKSALSNLIKPNENEAKSVDARQEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTR+QT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +
Sbjct: 183 DLRIGCAFTRYQTKFFQGKYGDL---DVSLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPY 238
Query: 246 WTINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
W + + K +G +W R FD A + + ATV V+ EK K P
Sbjct: 239 WVLQVTIKCSDGQDIVLNWSRVRSFDKEVANMFLSHVKEHDRATVVSVQSTEKSKSRPIA 298
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL + AS M +H M++AE LY G+ISYPRTET S+ +L +++Q
Sbjct: 299 LNTVELMRIASSGLGMGPQHAMQIAERLYTQGYISYPRTETTSYPENFDLLSTLKQQQNS 358
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
PDWG ++++ AAG+ N GHD HPPI P K ++ + D ++LY+ + RH
Sbjct: 359 PDWGEEVRKIV--AAGI--NRPKKGHDAGDHPPITPMKHAT-RNELDGDSWRLYDYITRH 413
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQ 483
F+A +++ T ++ I E F+ +G +L+ Y + +++ G +P + ++
Sbjct: 414 FIATLARDCKYMSTTIKFEIGIETFTATGHSLLSPGYTSILTWQALGNNDTLPKFTLDEK 473
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
L T+PP L+EA+L++ M+K GIGTDA++ HI + R Y A +
Sbjct: 474 VNIQEAKLIECYTQPPDYLTEAELITLMEKHGIGTDASIPVHINNICIRNYVTVAAGRKL 533
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT++G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 534 VPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQ 589
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ +EAM FE A+G+ +CG C+
Sbjct: 590 KFHYFVQSIEAMDQLFE--VSFSPLSASGKAHSRCGKCR 626
>gi|355725619|gb|AES08614.1| topoisomerase III beta [Mustela putorius furo]
Length = 861
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/642 (35%), Positives = 347/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E++ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGTCSVHEYSGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNPAHGGEKTVFRARFSSITDTDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P + S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMR-SATEAELGGEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSYDCKYLQSTIAFRIGSEHFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFPVSEIKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|71026270|ref|XP_762816.1| DNA topoisomerase III [Theileria parva strain Muguga]
gi|68349768|gb|EAN30533.1| DNA topoisomerase III, putative [Theileria parva]
Length = 531
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/497 (39%), Positives = 289/497 (58%), Gaps = 66/497 (13%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDR----------EIHQAVQN 167
++LWLDCDREGE IAFEV+EVC V +L++RRA FS++ + +I A N
Sbjct: 57 IILWLDCDREGEAIAFEVLEVCYKVKKNLIVRRAIFSSVTSQFTFHNWNSEPDIEHACVN 116
Query: 168 LVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTL 227
L +PN+ A+AV+ RQEIDLRIG++ TR+ T+ K + + + +LSYG CQ PTL
Sbjct: 117 LKEPNKNLANAVETRQEIDLRIGSAITRYLTLKYK-----TQINTKAAILSYGTCQLPTL 171
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTA 287
GFVVER+ I+ SE FWTIN + TF W R +FD
Sbjct: 172 GFVVERFILIENFISEPFWTINVEVTHDNIPVTFLWHRKRIFDEL--------------- 216
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDS 347
+ K SR+ R+SS M++AE LY G+ISYPRTET++
Sbjct: 217 ----------------------MNKDVSRFLRISSHRCMQLAESLYNKGYISYPRTETNA 254
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
F S NL I+ P++ Y LL+ G ++ P G ++D+AHPPIHP + +
Sbjct: 255 FPSSINLKSIIHNLSSVPEFSQYTHNLLNE--GGFKEPTKGKNNDEAHPPIHPVNSLTRD 312
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
S+ H+ LYE + R FLAC S+ A+G ++ + + I+GE+F+ G VI +N+L++Y++
Sbjct: 313 RAESEQHWLLYEYITRRFLACCSKDAIGHQSNIILEISGELFNLKGLVIKERNWLNIYKY 372
Query: 468 ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
SW G ++P + Q+ G TRPP LLSE++L+ M+K GIGTDATMH+HI+
Sbjct: 373 SSWEGKIVPEFQENQE---------DGATRPPDLLSESNLIDLMNKNGIGTDATMHEHIQ 423
Query: 528 KLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY---ELWKPNLRSMMESDMKEVSVGNK 584
K+ DR Y +KD RF PTN+G+A+ G+ + Y +L KP+LR+ ME DM ++SVG K
Sbjct: 424 KIQDRHYCVKDDKLRFVPTNLGKAIYYGFKEYNYHNIDLTKPSLRANMEKDMSDISVGIK 483
Query: 585 SKADVLANCLQQMKACF 601
K V+ N + +++ +
Sbjct: 484 RKEQVVLNYVNLLRSIY 500
>gi|301792373|ref|XP_002931153.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Ailuropoda melanoleuca]
Length = 862
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/642 (35%), Positives = 347/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E++ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SMSSHKGLNGTCSVHEYSGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNPTHGGEKTVFRARFSSITDTDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P + S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMR-SATEAELGSEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSYDCRYLQSTISFRIGPEHFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLRPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|326432311|gb|EGD77881.1| DNA topoisomerase [Salpingoeca sp. ATCC 50818]
Length = 855
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/610 (35%), Positives = 329/610 (53%), Gaps = 22/610 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVL VAEKP++AKS+A ILS N R+ + E++ +GQ H TSV GH
Sbjct: 3 VNVLQVAEKPALAKSLAAILS-NGSCSYGNTRTAGLPLLEYDGVFKGQKAHFKFTSVRGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ME+ F +Y W DP DL+ V + K++ L EA+ C +LVLWLDCD E
Sbjct: 62 VMEVQFPAKYNNWDRTDPGDLFTVDVEMQEADSSKNVVHALRSEAKGCDFLVLWLDCDPE 121
Query: 128 GENIAFEVIEVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
GENI FEVI+ R H + RA+FSA+ ++I A+Q+L +P++ + +VDAR+E
Sbjct: 122 GENICFEVIDAVRPAMNHRPGQQIFRAKFSAITAKDIKHAMQHLGEPDKNVSLSVDARRE 181
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLR+G +FTRFQ+ + + D + VLS+GPCQ PTL V+R+ IQ + E
Sbjct: 182 LDLRMGVAFTRFQSRFFQGKY----GDLDSQVLSFGPCQTPTLALCVQRHDLIQTFQPET 237
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+WT++ + W R +FD T A + A V +V+ +EK K P
Sbjct: 238 YWTLDVRALINDSPVKLQWDRVRVFDKTVASLFLHRIQDVRAAKVLRVQSKEKAKPRPTA 297
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL + S + + M VAE LY G+ISYPRTET ++ + + ++ E G
Sbjct: 298 LNTVELLRICSAGLGIGPQQAMVVAERLYIQGYISYPRTETTAYPANFDTAAVLHELKGS 357
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
PDWG A+ LLD G P GG D HPPI P + ++ ++ S D +++Y+LV RH
Sbjct: 358 PDWGKEARVLLD---GALVKP-KGGVDKGDHPPITPARLAT-DNELSGDMWRVYDLVCRH 412
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV-YRFESWGGLVIPTYVHGQQ 483
++A +S + T V + + E+FS SG+ +++ + V Y V+P GQ+
Sbjct: 413 YIATLSPDCRYSVTNVSLAVGSEMFSLSGQRLISPGFTSVLYWMSPESSTVVPDMQEGQE 472
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
I +++ T PP L+E+DL+S M+K GIGTDA++ HI + +R Y
Sbjct: 473 CIIKNVSISEKQTAPPGYLTESDLISLMEKHGIGTDASIPKHINTICERNYVTVQGGRTL 532
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PTN+G +V GY + ++L P +R+ +E ++ G DVL F+D
Sbjct: 533 VPTNLGVVVVHGYQRIDHDLCLPTMRAAVEKQFSLIACGQAEYEDVLFY--------FID 584
Query: 604 ARLKKVKLLE 613
+K K E
Sbjct: 585 TYKRKFKFFE 594
>gi|383857261|ref|XP_003704123.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Megachile rotundata]
Length = 851
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 238/638 (37%), Positives = 344/638 (53%), Gaps = 22/638 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS N R+G + ++E+ R + + MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILS-NGRCTSRKGLNGSCSVHEWVGQFRSETVNFKMTSVCGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+L+ P K K I L +E C +LVLWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPKLKIPYFLAKEGAHCDYLVLWLDCDKEGEN 123
Query: 131 IAFEVI-EVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
I FEVI V + +N L + RARFSA+ +++I A+ NL+ PN+ A +VDARQE+D
Sbjct: 124 ICFEVIYAVQQGMNRRLNPNDIWRARFSAITEKDIKSALANLIKPNENEAKSVDARQELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +W
Sbjct: 184 LRIGCAFTRFQTKFFQGKYGDL---DASLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPYW 239
Query: 247 TINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
+ + KS +G SW R FD A + + ATV V EK K P L
Sbjct: 240 VLQVTVKSSDGQDIILSWSRVRSFDKEIANMFLSHIKEYDQATVLSVESSEKTKSRPIAL 299
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL + AS M H M++AE LY G+ISYPRTET + +L +++Q +P
Sbjct: 300 NTVELMRVASSGLGMGPHHAMQIAERLYTQGYISYPRTETTLYPENFDLPAALKQQQNNP 359
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +++L G+ N GH+ HPPI P K ++ S D ++LY+ + RHF
Sbjct: 360 DWGDQVRKIL--MTGI--NRPKKGHNAGDHPPITPMKHAT-RSELDGDSWRLYDYITRHF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQF 484
+A ++ T V+ I E F+ +G ++ Y + +++ G +P + ++
Sbjct: 415 IATLAADCKYLSTTVKFEIGMETFTANGHSLIDPGYTSILTWQTLGSNDTLPRFTVNEKV 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
L T+PP L+EA+L+S M+K GIGTDA++ HI + R Y A +
Sbjct: 475 NIQETKLLECYTQPPDYLTEAELISLMEKHGIGTDASIPVHINNICMRNYVNVAAGRKLV 534
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PT++G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 535 PTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQK 590
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
VK +EAM FE A+G+ +CG C+
Sbjct: 591 FHYFVKSIEAMDQLFE--VSFSPLSASGKAHSRCGKCR 626
>gi|149720154|ref|XP_001493576.1| PREDICTED: DNA topoisomerase 3-beta-1 [Equus caballus]
Length = 862
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/642 (35%), Positives = 346/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E+ + GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SMSSHKGLNGTCSVHEYTGTFAGQAVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNQAHGGEKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P + S+ E+ + ++LYE +
Sbjct: 358 ANHPAWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMR-SATEAELGSEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSYDCKYLQSSISFRIGPEHFCCTGKTVISPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y + ++
Sbjct: 473 GDTFAVSEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVVVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|444322976|ref|XP_004182129.1| hypothetical protein TBLA_0H03290 [Tetrapisispora blattae CBS 6284]
gi|387515175|emb|CCH62610.1| hypothetical protein TBLA_0H03290 [Tetrapisispora blattae CBS 6284]
Length = 659
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 233/653 (35%), Positives = 349/653 (53%), Gaps = 47/653 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS----IRGQPCHMLMTS 63
+ VL VAEK S+AK+VA IL + R+ Y K Y+F YS G C + MTS
Sbjct: 1 MKVLCVAEKNSIAKAVANILGGGRS-SSRDSGYMYVKNYDFQYSGFSFANGNDCQVTMTS 59
Query: 64 VTGHLMELDF-DERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
V GHL +DF +ERY W C +L+ AP+ +++K I + ++ EAR +L++W
Sbjct: 60 VAGHLTGIDFSNERY-GWGKCKIEELFDAPLSNVFDKNQKKITENIKREARYADYLMIWT 118
Query: 123 DCDREGENIAFEVIEVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
DCDREGE I +E+ + N L + RA FS L R I A +N + +AV
Sbjct: 119 DCDREGEYIGWEIYQEALKGNRRLTDSQVFRAVFSHLERRHILSAARNPQRLDMNSVNAV 178
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSV-------------------TDDRNLVLSYG 220
R EIDLR G +FTR T ++N I ++ ++V+SYG
Sbjct: 179 GTRIEIDLRAGVTFTRLLTDTMRNKVIAAMGPSATSGRSSSDNNNNTNSKKKDSVVISYG 238
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTI--NCSHKSEEGTATFSWMRGHLFDYTSAVIIY 278
CQFPTLGFVV+R+ I+ SEEFWTI + +K F W RG+LFD S + Y
Sbjct: 239 TCQFPTLGFVVDRFERIRNFISEEFWTIQLHIENKDANTPTVFRWQRGNLFDRLSCLAFY 298
Query: 279 EMCVQEP--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG 336
E C++ A V ++ + KY P PL+T+EL+K +++ +++++ ++ AE LYQ G
Sbjct: 299 ESCIEIAGNKAKVIDLKSKPTSKYRPLPLTTVELQKNCAKFLKLNAKQSLDAAEKLYQKG 358
Query: 337 FISYPRTETDSFSSGTNLHGIVQEQI-----GHPDWGPYAQRLLD---HAAGLWRNPGSG 388
F+SYPRTETD F +L +V+ Q G W YA+ LL +A ++ P +G
Sbjct: 359 FVSYPRTETDIFPKVMDLRALVENQAQIGQQGRSPWAEYAEGLLSDDPYAPNKYQFPRNG 418
Query: 389 GHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
HDDKAHPPIHP + + ++YE + RHFLA S A G T + ++ A E
Sbjct: 419 THDDKAHPPIHPVISLGATANITPVERRVYEYISRHFLASCSTDAKGQSTSLTLDWADEK 478
Query: 449 FSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
F G V+L +N+L+VY + W +P ++ + SG T PP ++E++L
Sbjct: 479 FLADGLVVLERNFLNVYPWAKWETTKQLPRLEMNEECTIMKSEMKSGKTSPPKPMTESEL 538
Query: 508 LSCMDKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE-- 562
+ MD GIGTDAT+ +HI+K+ R Y + T PT +G ALV G++ +G E
Sbjct: 539 IMLMDANGIGTDATIAEHIEKIQIRNYVKSEKAGKETYLQPTKLGVALVHGFEAIGLEDS 598
Query: 563 LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAM 615
KP R ME ++K++ G +++ +V+ N + + ++ F+ K LL+
Sbjct: 599 FAKPFQRREMEEELKKICEGQQTRNNVVNNIVGKYRSYFMKTNNSKNVLLQVF 651
>gi|164657941|ref|XP_001730096.1| hypothetical protein MGL_2478 [Malassezia globosa CBS 7966]
gi|159103991|gb|EDP42882.1| hypothetical protein MGL_2478 [Malassezia globosa CBS 7966]
Length = 694
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/567 (37%), Positives = 314/567 (55%), Gaps = 40/567 (7%)
Query: 99 EDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALID 158
++ + I + L EAR L++W DCDREGE I FE+ + C+ L+++RARFSA+I
Sbjct: 2 QESESIARNLTIEARSTDMLIIWTDCDREGEAIGFEIAQHCQKAQRRLIVKRARFSAVIA 61
Query: 159 REIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNF-HIDSVTDDRNLVL 217
+IH A NLVD + DAVDARQE+DLR GA+FTR QTM L +DS ++L
Sbjct: 62 DQIHHACMNLVDLDLHAVDAVDARQEVDLRAGAAFTRLQTMRLGPLLKLDS------MLL 115
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHK-SEEG-----TATFSWMRGHLFDY 271
SYGPCQFPTLGFVV+ Y ++ EEFW+I+ H S++G F W R HLFD
Sbjct: 116 SYGPCQFPTLGFVVDHYKRVETFVPEEFWSIDLRHAVSQQGQDRRTNVEFLWDRNHLFDK 175
Query: 272 TSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAED 331
I+++ C A V +V ++ K P PL+T+EL+K SR M+ + + VAE
Sbjct: 176 RIVHILHKRCKDAEEAEVKQVVRRTTWKRKPTPLTTVELQKNLSRLSGMAPKRILDVAES 235
Query: 332 LYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG---------LW 382
LYQ G +SYPRTET+ + + ++ +Q WG +A + A G +
Sbjct: 236 LYQRGLLSYPRTETNQYDKDFDFVSLLDKQRSDCIWGAHATEIFASATGNGSDSLHSLQY 295
Query: 383 RNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
P G +DKAHPPIHPT ++ D ++Y+ V R FLA + A+G ET + I
Sbjct: 296 ERPRDGQKNDKAHPPIHPTAHAND---LKADEKQVYDYVTRRFLASCTTDAMGEETKIFI 352
Query: 443 NIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLL 502
+ GE F TSG ++ +L ++ +E W +P Y Q+F P+++++ SG T PP LL
Sbjct: 353 EMGGESFHTSGLLVKTLGFLTIFPYEKWTSKFVPEYQERQRFRPSSISVKSGSTSPPNLL 412
Query: 503 SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI--KDANTRF-APTNIGEALVMGYD-- 557
+EADL+ MDK GIGTDAT+ +HIKK++DR Y + K T++ P+ +G LV GY+
Sbjct: 413 TEADLVHLMDKHGIGTDATIAEHIKKVIDRQYVVITKQGKTKYLVPSTLGMGLVEGYERL 472
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGI 617
+ +L KP LR E+ + ++ ++K + ++ L + K + ++ +A+
Sbjct: 473 ETSLQLCKPKLRHDTETQLGLIATAQRTKQETVSENLTEYKRIYDIVERDFEQIRDAVCT 532
Query: 618 FFE----------RWSGGEDQQAAGEV 634
+F RW +Q E
Sbjct: 533 YFRTLPQDEVQGPRWQHARREQRQAEA 559
>gi|157871822|ref|XP_001684460.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
gi|68127529|emb|CAJ05541.1| putative DNA topoisomerase III [Leishmania major strain Friedlin]
Length = 866
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 233/637 (36%), Positives = 337/637 (52%), Gaps = 26/637 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
NVL VAEKPS+A+S+A ILS R R+R +YE+ + G P + +TS TGH+
Sbjct: 4 NVLMVAEKPSLAESIATILSNGSCSR----RTRALPVYEYPGNFMGSPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W D L+ AP+ K + LE EA+ C LVLWLDCDREG
Sbjct: 60 FSCDFTSQHQNWDRTDEEQLFTAPITWKDTSGK--VTHHLEHEAQGCDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R + H + RA FSA+ EI QA +NL PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRREIYSHHNIFRAHFSAITAEEIFQAFRNLGKPNKNISDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTRFQT + + D V+SYGPCQ PTLGF V+R+ EI + E FW
Sbjct: 178 KVGVAFTRFQTKYFQGKYGDLDAS----VISYGPCQTPTLGFCVQRHDEILNFKPENFWR 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
+ F W RG LFD T A +I + + ATV V + P L+
Sbjct: 234 LVPVASRGGALLQFEWDRGRLFDETMARLILQRITKNGKVATVVNVSVSNDTRPRPTGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L K ASR + + M +AE+LY G+ISYPRTE+ ++ S NL G + +Q H
Sbjct: 294 TVDLMKIASRALGIGPHYVMSIAENLYIRGYISYPRTESTAYPSSFNLAGTLAQQKNHSM 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG Y LL + G D HPPI P + S+ S D ++++E + RHF+
Sbjct: 354 WGAYVTTLLQQGHARPK----AGKDAGDHPPITPMR-SASPGELSGDEWRIFEYITRHFI 408
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFI 485
A VS +T + I + GE+FS SG+V+ + ++ +PT VH G F
Sbjct: 409 ASVSPDCRLIKTKITIELGGELFSISGKVVEDPGFTEIMPHARVEDDRMPTGVHKGDSFQ 468
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + L +G T+PP L+E+DL+ M+K GIGTDA++ H+ +++R Y A P
Sbjct: 469 LSDVRLQAGQTQPPSYLTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKP 528
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+ +G L+ G + EL P +RS +E + ++ G DVL+ L +
Sbjct: 529 SKLGIVLIHGIKAIDPELVLPLVRSRVEEYVTHIAEGRAQLDDVLSYSL-DLFFAKFKFF 587
Query: 606 LKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ + + +A MG F S AAG+ + +CG C
Sbjct: 588 KEHIDVFDALMGASFSAIS------AAGKPITRCGNC 618
>gi|159478116|ref|XP_001697150.1| hypothetical protein CHLREDRAFT_138607 [Chlamydomonas reinhardtii]
gi|158274624|gb|EDP00405.1| predicted protein [Chlamydomonas reinhardtii]
Length = 644
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 229/648 (35%), Positives = 337/648 (52%), Gaps = 33/648 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
++VL VAEKPS+A S+A ILS R+ R+ + ++E+ RGQP MTSV GH
Sbjct: 3 LSVLMVAEKPSLAGSIAQILSDG---RVASRRAALD-VHEWEGRFRGQPARFKMTSVIGH 58
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +DF + W DP+ LY AP K K + + L+ E R C LVLWLDCDRE
Sbjct: 59 VYSIDFTAAFNSWDKVDPSQLYDAPTVKQEANPKAHVCEHLQREGRGCDVLVLWLDCDRE 118
Query: 128 GENIAFEVIE-----------VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
GENI FEV++ + RARFSA+ EI A+ NLV PN+ A
Sbjct: 119 GENICFEVMDNVVPYMSRRGGGGGGSGGQQTVFRARFSAITAPEIRAAMNNLVSPNEAEA 178
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFH--IDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
AVDARQE+DLR+G SFTRFQT + + +D+ V+SYGPCQ PTL F VER+
Sbjct: 179 LAVDARQELDLRVGVSFTRFQTRFFQGRYGNLDAS------VISYGPCQTPTLNFCVERH 232
Query: 235 WEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
I + + E FW + W RG +FD + + V V +
Sbjct: 233 QAITSFQPEPFWAVRPRASKAGVPLELEWERGRVFDQDVGGMYAALVRDAKRLRVVDVGE 292
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
+E K P+ L+T+EL K AS + H M+VAE LY +G++SYPRTE+ ++ ++
Sbjct: 293 KEDRKSRPHGLNTVELLKYASASLGLGPAHAMQVAERLYTSGYLSYPRTESSAYPPNFDI 352
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
+G V HP +G YA LL ++P GG D HPPI P + ++ D
Sbjct: 353 NGNVAALRNHPVFGGYASALLQQGI---KHP-QGGTDVGDHPPITPVRSATETELGGGDA 408
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
+++Y+ V RHFL VS AV +T GE+F+ +G V++ + + + +
Sbjct: 409 WRVYDYVARHFLGSVSPDAVYRKTKAVFEAGGEMFTATGCVVVKPGFTSIMPWRATQSDS 468
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
+P G+ + + L G T PP L+E+DL+ M+K GIGTDA++ HI + +R Y
Sbjct: 469 LPPLSPGEHLTCSEVELYQGRTSPPDYLTESDLIGLMEKYGIGTDASIPVHINNICERNY 528
Query: 535 AIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
A + PT +G L+ GY + EL KP +R+ +E + ++ G K V+A+ +
Sbjct: 529 VSIQAGRKVVPTELGITLIRGYQLIDPELCKPQVRAHVEQQLDLIAKGKADKEAVVAHTV 588
Query: 595 QQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+Q +A FL V + M FE + ++G+ + +CG C+
Sbjct: 589 EQFRAKFLFF----VSHVTRMDSLFE--ASFSPLASSGKPLSKCGKCR 630
>gi|126324756|ref|XP_001363870.1| PREDICTED: DNA topoisomerase 3-beta-1 [Monodelphis domestica]
Length = 862
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 230/642 (35%), Positives = 343/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E++ S GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHEYSGSFSGQTVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K + K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFTGKYNHWDRVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKPRGTEKTVFRARFSSITDTDICNAMSRLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + + E A V ++EK K
Sbjct: 238 ELYWVLQAKINPDKDSSVLLDWDRVRVFDREIAHMFLNITRMEKEAKVEGTSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL + R GHD HPPI P + S+ E+ D ++LYE +
Sbjct: 358 ANHPYWAQTVKQLLADSINRPRK----GHDAGDHPPITPMR-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG-LVIPTYVH 480
RHF+A VS + + I E F+ SG+ +L+ + ++ ++S +PT
Sbjct: 413 TRHFIATVSYDCKYLQNTISFQIGPERFTCSGKTLLSPGFTEIMPWQSIPPEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFPLSEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + +++G VL + L K
Sbjct: 533 RRLRPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLSLIALGKADYHQVLEHTLNIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|307203099|gb|EFN82279.1| DNA topoisomerase 3-beta-1 [Harpegnathos saltator]
Length = 851
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/639 (36%), Positives = 347/639 (54%), Gaps = 24/639 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS + + R+G + ++E+ + + MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILSNGRCV-TRKGLNGTCPVHEWVDQFKYETVTFKMTSVCGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+L+ P K K I L +E C +L+LWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEALPKLKIPYILAKEGSHCDYLILWLDCDKEGEN 123
Query: 131 IAFEVIEVCRAVNCHLVLR-----RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
I FEVI + H L RARFSA+ +++I A++NL+ PN+ A +VDARQE+
Sbjct: 124 ICFEVINAVQQ-GMHRKLHPNDIWRARFSAITEKDIKSALENLIKPNENEAKSVDARQEL 182
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTR+QT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +
Sbjct: 183 DLRIGCAFTRYQTKFFQGKYGDL---DVSLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPY 238
Query: 246 WTINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
W + + K +G +W R FD A + + ATV ++ EK K P
Sbjct: 239 WVLQVTIKCADGQDIILNWSRVRSFDKEVANMFLSHVKEYERATVVSIQSTEKSKSRPIA 298
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL + AS M +H M++AE LY G+ISYPRTET S+ +L +++Q +
Sbjct: 299 LNTVELMRVASSGLGMGPQHAMQIAERLYTQGYISYPRTETTSYPENFDLLSTLKQQQNN 358
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P+WG +++L AAG+ N GHD HPPI P K ++ + D ++LY+ + RH
Sbjct: 359 PEWGEDVRKIL--AAGI--NRPKKGHDAGDHPPITPMKHAT-RNELDGDSWRLYDYITRH 413
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQ 483
F+A +++ T V+ I E+F+ +G +L Y + +++ G +P + ++
Sbjct: 414 FIATLARDCKYLSTTVKFEIGMEIFTATGHSLLDAGYTSILTWQALGSSDTLPKFTAEEK 473
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
L T+PP L+EA+L+S M+K GIGTDA++ HI + R Y R
Sbjct: 474 VNIQEAKLLECYTQPPDYLTEAELISLMEKHGIGTDASIPVHINNICIRNYVNVTVGRRL 533
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT++G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 534 VPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQ 589
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ +EAM FE A+G+ +CG C+
Sbjct: 590 KFHYFVQSIEAMDQLFE--VSFSPLSASGKAHSRCGKCR 626
>gi|332027377|gb|EGI67460.1| DNA topoisomerase 3-beta-1 [Acromyrmex echinatior]
Length = 848
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 230/635 (36%), Positives = 346/635 (54%), Gaps = 19/635 (2%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS + R+G + ++E+ R + + MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILSSGR-CSTRKGLNGSCSVHEWVGQFRSETVNFKMTSVCGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+L+ K K I L +E C +LVLWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCSTEKKEAVPKLKIPYFLAKEGAHCDYLVLWLDCDKEGEN 123
Query: 131 IAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
I FEVI V + ++ L + RFSA+ +++I A+ NL+ PN+ A +VDARQE+DLRI
Sbjct: 124 ICFEVINAVQQGMHRKLHINATRFSAITEKDIKSALANLIKPNENEAKSVDARQELDLRI 183
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
G +FTR+QT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +W +
Sbjct: 184 GCAFTRYQTKFFQGKYGDL---DVSLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPYWVLQ 239
Query: 250 CSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ KS +G SW R FD A + + ATV ++ EK K P L+T+
Sbjct: 240 VTVKSPDGQDIVLSWSRVRSFDKEVASMFLSHVKEYDQATVVSIQSTEKCKSRPIALNTV 299
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
EL + AS M +H M++AE LY G+ISYPRTET S+ +L +++Q +WG
Sbjct: 300 ELMRVASSGLGMGPQHAMQIAERLYTQGYISYPRTETTSYPENFDLLSTLKQQQNSSEWG 359
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
++++ A G+ N GHD HPPI P K ++ + D ++LY+ + RHF+A
Sbjct: 360 EEVRKII--ATGI--NRPKKGHDAGDHPPITPMKHAT-RNELDGDLWRLYDYITRHFIAT 414
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQFIPT 487
+++ T V+ I E+F+ +G +L+ Y + +++ G +P + ++
Sbjct: 415 LARDCRYLSTTVKFEIGMEIFTATGHSLLSPGYTSILTWQALGNNDTLPKFTSDEKVNIQ 474
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L T+PP L+EA+L+S M+K GIGTDA++ HI + R Y A + PT+
Sbjct: 475 EAKLVECYTQPPDYLTEAELISLMEKHGIGTDASIPVHINNICIRNYVTVAAGRKLIPTS 534
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 535 LGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQKFHY 590
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ +EAM FE A+G+ +CG C+
Sbjct: 591 FVQSIEAMDQLFE--VSFSPLSASGKAHSRCGKCR 623
>gi|398018216|ref|XP_003862289.1| DNA topoisomerase III, putative [Leishmania donovani]
gi|322500518|emb|CBZ35595.1| DNA topoisomerase III, putative [Leishmania donovani]
Length = 867
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/637 (36%), Positives = 337/637 (52%), Gaps = 26/637 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
NVL VAEKPS+A+S+A ILS R R+R +YE+ + G P + +TS TGH+
Sbjct: 4 NVLMVAEKPSLAESIATILSNGSCSR----RTRALPVYEYTGNFMGSPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W D L+ AP+ + + + LE EA+ C LVLWLDCDREG
Sbjct: 60 FSCDFTSQHQNWDRTDEEQLFTAPITWK--DTSGKVSRHLEHEAQGCDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R + H + RA FSA+ EI A +NL PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRREIYNHHSIFRAHFSAITAEEIFHAFRNLGKPNKNISDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTRFQT + + D V+SYGPCQ PTLGF V+R+ EI + E FW
Sbjct: 178 KVGVAFTRFQTKYFQGKYGDLDAS----VISYGPCQTPTLGFCVQRHDEILNFKPENFWR 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
+ F W RG LFD T A +I + + ATV V + P L+
Sbjct: 234 LVPVASRGGALLQFEWDRGRLFDETMARLILQRITKSGKVATVVNVSVSNDTRPRPTGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L K ASR + + M +AE+LY G+ISYPRTE+ ++ NL G + +Q H
Sbjct: 294 TVDLMKIASRALGIGPHYVMSIAENLYIRGYISYPRTESTAYPPSFNLAGALAQQKNHSM 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG Y LL + G D HPPI P + S+ S S D ++++E + RHF+
Sbjct: 354 WGAYVTALLQQGHARPK----AGKDAGDHPPITPMR-SASPSELSGDEWRIFEYITRHFI 408
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFI 485
A VS +T + I + GE+FS SG+V+ + ++ +PT VH G F
Sbjct: 409 ASVSPDCRLIKTKITIELGGELFSISGKVVEDPGFTEIMPHARVEDDRMPTGVHKGDSFQ 468
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + L +G T+PP L+E+DL+ M+K GIGTDA++ H+ +++R Y A P
Sbjct: 469 LSDVRLQAGQTQPPSYLTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKP 528
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+ +G L+ G + EL P +RS +E + ++ G DVL+ L +
Sbjct: 529 SKLGIVLIHGIKAIDPELVLPLVRSRVEEYVTHIAEGRAQLDDVLSYSL-DLFFAKFKFF 587
Query: 606 LKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ + + +A MG F S AAG+ + +CG C
Sbjct: 588 KEHIDVFDALMGASFSAIS------AAGKPITRCGNC 618
>gi|327280844|ref|XP_003225161.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Anolis
carolinensis]
Length = 862
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/642 (36%), Positives = 347/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E+ S GQ H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSRKGLNGACSVHEYTGSFIGQSSHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ + V+ RA+FS++ D +I A+ +L +PN A +VDAR
Sbjct: 122 GENICFEVLDAIVPIMNKPRGSERVVYRAKFSSITDTDICNAMNHLGEPNHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCSHKSEEGTA-TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + E+ + T W R +FD A + + A V V ++EK K
Sbjct: 238 EMYWVLQAKVSHEKDSCLTLDWDRVRIFDREIAQLFLNITKAVKDAKVESVSRKEKSKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASAALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL A G+ N GHD HPPI P + +S E+ D ++L+E +
Sbjct: 358 ANNPYWAETVKALL--AEGI--NKPRKGHDAGDHPPITPMRAAS-EAELGGDGWRLFEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG-LVIPTYVH 480
RHF+A VS +T + ++ E F+ G+ ++ + ++ ++S +P+
Sbjct: 413 TRHFIATVSADCKYLQTTITCSVGTERFTCIGKTVILPGFTEIMPWQSIPPEESLPSCER 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y +
Sbjct: 473 GDVFPVSEIKLLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G + VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKANYHQVLEHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|429961669|gb|ELA41214.1| hypothetical protein VICG_01703 [Vittaforma corneae ATCC 50505]
Length = 791
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/605 (36%), Positives = 331/605 (54%), Gaps = 47/605 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VLNVAEKPSVA S++ ILS G +Y F + M+ TSV GHL
Sbjct: 3 VLNVAEKPSVANSISKILS--TSCNKTRGMHKYCPNIYFQTKFNSENSQMVFTSVLGHLF 60
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
E F+++ KW+ +P DL+ + + + K + +++ + R +V+W DCDREGE
Sbjct: 61 EFSFEDQ-GKWNESNPKDLFKEEIIGRINPEHKLAAENIKKLSERASLVVIWTDCDREGE 119
Query: 130 NIAFEV---IEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
NIA ++ IE R V ++RARFSA+ EI A++NL + N ADAVDAR E+D
Sbjct: 120 NIARQIKTIIETHRKV----CIKRARFSAISRNEIECALENLTEINFLEADAVDARIELD 175
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG++FTR QT ++ + V+S+GPCQ PTL FVV+R+ +I+ SE+++
Sbjct: 176 LRIGSAFTRIQT----------ISHNNGNVISFGPCQIPTLNFVVQRHIQIENFISEKYF 225
Query: 247 TI--------NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
++ N +++ F+W R HLFD + Y + ++ A ++ + K
Sbjct: 226 SLQNTVLTDQNSKKQNDTIKNVFAWERKHLFDKNCIIYFYNV-LRNSKAVISDKKVSNKE 284
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
KY P PL T+E +K S ++++ S M +AE LY G+ISYPRTETDSF I+
Sbjct: 285 KYRPLPLRTVEFQKICSSFYKIDSHRLMSIAEKLYNNGYISYPRTETDSFPKSFGFKNII 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
+ P G YA A ++ P SG ++D+AH PI+P K S D K++
Sbjct: 345 NKLKNDPRLGEYASNF----AFVY--PRSGSNNDQAHSPIYPLKDGSD---LQGDERKIF 395
Query: 419 ELVVRHFLACVSQPAVGAETIVEINI-------AGEVFSTSGRVILAKNYLDVYRFESWG 471
E + R FL CVS+ A G ET +NI E F G I+ +NYLDVY ++ W
Sbjct: 396 EFISRRFLGCVSKNAKGVETEYTMNIFFNDGLSQHETFKCKGLNIVERNYLDVYIYDKWE 455
Query: 472 GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
+ + + + + + G T P L+E+DL+S MDK GIGTDAT+H+HI K+
Sbjct: 456 SSQVGDF-RINEVVENNVEIIEGNTTKPEHLTESDLISLMDKNGIGTDATIHEHIHKIQT 514
Query: 532 RFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
R Y +K +F P +G L+ Y+ +G + +P LR +E ++K++ G K+K +++
Sbjct: 515 RGY-VKKEKFKFIPLKLGLNLIKAYNSIGLPISEPTLRKNLEENLKKICEGTKNKNEIVK 573
Query: 592 NCLQQ 596
N +Q+
Sbjct: 574 NEIQE 578
>gi|237838573|ref|XP_002368584.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
gi|211966248|gb|EEB01444.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii ME49]
Length = 841
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 234/643 (36%), Positives = 343/643 (53%), Gaps = 30/643 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+++A ILS R+G S ++EF+ S RG+ +TS GH+
Sbjct: 5 VLMVAEKPSIAETIARILSGGN-FHKRKGISPVTSVWEFSGSFRGEAVLFKVTSTAGHIY 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+ DF ++ W +P +L+ APV K K + L++EA C+ LVLWLDCDREGE
Sbjct: 64 QTDFPRQFNDWEKTNPIELFDAPVVKVEANAKHRLPAHLQKEAHGCKHLVLWLDCDREGE 123
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+ RA+FSAL +I QA++ L PN+ AD+VDARQE+DL++
Sbjct: 124 NICFEIW-------------RAKFSALAPADIQQAMRTLGTPNKNEADSVDARQELDLKV 170
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
G +FTRFQT + + D D +LV SYGPCQ PTL F V+RY +I A + E F+T++
Sbjct: 171 GCAFTRFQTQYFQGKYGDL---DASLV-SYGPCQTPTLQFCVQRYDDIHAFQPETFYTLD 226
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMC-VQEPTATVTKVRQQEKLKYPPYPLSTI 308
S + E W RG +FD +A ++ + A V V ++E+ P L+T+
Sbjct: 227 TSIRVGEQELFLEWERGQVFDSVTAHTYKDIVSARGAVAVVVDVTEKEEKMPRPQALNTV 286
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
+ K AS+ M + M+ AE LY +G ++YPRTET + +L G Q +P WG
Sbjct: 287 NMLKLASQRLGMGPQQAMQTAERLYLSGKVTYPRTETCKYPESFDLRGTAAAQASNPYWG 346
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
Y + LL ++GL R G D HPPI P ++ D + LYEL+ RHFLA
Sbjct: 347 GYVKELL--SSGLARP--RDGVDAGDHPPITPVCSATEADVGGGDAWALYELITRHFLAS 402
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
+S + V + E+FS SGR +L + + R + + IP + Q
Sbjct: 403 ISPDCRFLKRKVTFCVNEEIFSLSGRHMLDGGFTRIMRGDGMKDVSIPDFRKADQVPLHK 462
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+++ SG T PPP LSE+DLL M+K GIGTDA+M HI + +R Y +N R PT +
Sbjct: 463 ISVGSGQTHPPPFLSESDLLGLMEKHGIGTDASMATHINNICERNYVSLVSNRRLEPTKL 522
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GY + +L P++R+ +E+ + ++ G V+ + L K F
Sbjct: 523 GVCLVHGYMQIDPDLVLPSVRASIEALVDVIAQGKADITAVVTHSLYMFKLKF----AYF 578
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE-SNMVLKK 650
+K +E M + FE Q G + +CG C N++ K+
Sbjct: 579 LKQIERMDMLFEASFTMLAQ--TGNALSRCGRCNRYMNLITKR 619
>gi|50288605|ref|XP_446732.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526040|emb|CAG59659.1| unnamed protein product [Candida glabrata]
Length = 650
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 239/644 (37%), Positives = 349/644 (54%), Gaps = 39/644 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS----IRGQPCHMLMTS 63
+ VL VAEK S+AK+V+GIL + L +R+ Y K Y+FNYS G + MTS
Sbjct: 1 MKVLCVAEKNSIAKAVSGILGGGR-LSVRDSGYTYIKNYDFNYSGFSFAGGNDVQVTMTS 59
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHL +DF W +C L+ AP+ + + ++++ I + EA+ L++W D
Sbjct: 60 VAGHLTGVDFAHEQYGWGNCRIEQLFDAPLNEVMDKNQQKIAANIRREAKFADVLMIWTD 119
Query: 124 CDREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
CDREGE I +EV + N L + RA FS L I QA + +AV
Sbjct: 120 CDREGEYIGWEVYMEAQKSNRRLNDNQVYRAVFSHLERSHILQAAHRPHRLDMRSVNAVR 179
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTD--DRN-----LVLSYGPCQFPTLGFVVER 233
R EIDLR G +FTR T ++N S ++ RN V+SYG CQFPTLGFVV+R
Sbjct: 180 TRIEIDLRAGVTFTRLLTETMRNKVASSQSEGPSRNNRRDMPVISYGTCQFPTLGFVVDR 239
Query: 234 YWEIQAHESEEFWTINCSHKSEEGTAT---FSWMRGHLFDYTSAVIIYEMCVQEP--TAT 288
+ I+ EEFW I + K EEG + F W RG LFD S + IYEMC+++ +A
Sbjct: 240 FERIRHFIPEEFWYIQLNIKGEEGESKPIQFQWDRGRLFDRFSVLSIYEMCLEQDGDSAR 299
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF 348
V+ ++ + KY P PL+T+EL+K +R+ R++++ ++ AE LYQ GFISYPRTET+ F
Sbjct: 300 VSDIKSKPTSKYKPLPLTTVELQKNCARFLRINAKQSLDAAEKLYQRGFISYPRTETNVF 359
Query: 349 SSGTNLHGIVQEQI-------GHPDWGPYAQRLLDHA---AGLWRNPGSGGHDDKAHPPI 398
S +L +V++Q G DW YA LL+ + + P SG DDKAHPPI
Sbjct: 360 PSTMDLKSLVEKQAQLDQPAQGRSDWAEYAANLLNGSGSNGNRFMFPRSGNRDDKAHPPI 419
Query: 399 HPTKFSSGESRWSQD--HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
HP S G S + ++YE + RHFLA S+ A G +T + ++ +GE F +G ++
Sbjct: 420 HPI-VSVGRDVTSLNPTEKRVYEYICRHFLASCSEDAKGQQTTISLDWSGERFYANGLMV 478
Query: 457 LAKNYLDVYRFESWGGL-VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
+N+LDVY + W +P QQ + +G T PP ++E++L+ MD G
Sbjct: 479 TERNFLDVYPWARWETTRQLPRLEINQQCKILKAEMKNGSTSPPKPMTESELIVLMDANG 538
Query: 516 IGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LWKPNLRS 570
IGTDAT+ +HI+K+ R Y T PT +G ALV G++ +G E KP R
Sbjct: 539 IGTDATIAEHIEKIQMRSYVQSQKVGKETYLQPTILGRALVHGFEAIGLEDSFAKPFQRR 598
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
ME ++++ G + V+++ L + + + K LLE
Sbjct: 599 EMEEMLRQICDGATDRPRVVSDILSKFRRYWNKTNGSKNTLLEV 642
>gi|169806308|ref|XP_001827899.1| DNA topoisomerase III [Enterocytozoon bieneusi H348]
gi|161779347|gb|EDQ31370.1| DNA topoisomerase III [Enterocytozoon bieneusi H348]
Length = 722
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 224/688 (32%), Positives = 363/688 (52%), Gaps = 53/688 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
++NVAEKPSVAKS+A I S + + +G+++Y N+ + +M+ TSV GH+
Sbjct: 3 IVNVAEKPSVAKSIANIFS--NSVEVYKGQNKYC----LNHKFIFKNNNMIFTSVLGHMY 56
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
E +F Y+ W++ +P +L+ A + K + + IKK +E+ + +V+W DCDREGE
Sbjct: 57 EFEFPSEYKNWNTINPKNLFTAKIYKKLKTESIYIKKNIEDLSINADLVVIWTDCDREGE 116
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI ++ +++ + ++RARFSA+ EI +A NL D NQ+ +DAV+ARQEIDLRI
Sbjct: 117 NIGKQI----QSLVYNKKVKRARFSAISKHEILKAFDNLCDINQYESDAVEARQEIDLRI 172
Query: 190 GASFTRFQTMLL-KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
G +FT QT+ L K +S++ + ++SYG CQ PTL FVV+R+ EI + E+F++I
Sbjct: 173 GCAFTVLQTLALQKTLFFNSLSAHK--IISYGQCQIPTLNFVVQRHKEIVSFIPEKFYSI 230
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ +KS E F W RGH+FD + Y + VT + ++ K+KY P PL T+
Sbjct: 231 SIINKSNE----FLWNRGHIFDKNCVLHFYNQLI-SANFIVTDIIRENKVKYKPLPLRTV 285
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
EL+K + Y+++SS M +AE LY G+ISYPRTETD F + + + I+ + +
Sbjct: 286 ELQKVCTTYYKISSHEIMDIAEKLYNQGYISYPRTETDVFPNNFDFNRIIGKLRNDIQFK 345
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
Y ++ + P +G ++D+AH PI+P K G ++ +Y+ + R F+AC
Sbjct: 346 EYLEKF------TLKFPRNGNNNDQAHSPIYPLK--DGNMLKDKER-NIYDFIARRFIAC 396
Query: 429 VSQPAVGAETIVEI-------------NIAGEVFSTSGRVILAKNYLDVYRFESWGGL-V 474
A G E +++I NI E F G +IL +NYL++Y ++ W +
Sbjct: 397 CDDNAKGVEVVIKIRPFVPKSSNILQKNIEQENFYCKGLIILERNYLNIYFYDKWNAKEI 456
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
I Y + + G+T P L+E DL++ MDK IGTDAT+H+HI+K+ R Y
Sbjct: 457 IGKYNVNDIIQEANIEIKDGMTTCPEYLTEKDLITLMDKNEIGTDATIHEHIEKIQIRNY 516
Query: 535 AIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSK-------A 587
AIK PT +G L+ Y + L + ++R ME ++K + G SK
Sbjct: 517 AIKQK-QYIKPTIVGINLINAYSQLKLPLSECSIRKDMEKNLKRICSGQLSKNALVKEQI 575
Query: 588 DVLANCLQQMKACFLD-ARLKKVKLLEAMGIFFERWSGGED--QQAAGEVVRQCGICQES 644
D+ + + + D + + + + + ++S + + ++ C
Sbjct: 576 DIYSRMFDKFQQNINDFVNIMQTNVEKNTSELYNKYSLASNHTNNTSSNILCWCKQIAVK 635
Query: 645 NMVLKKSRDGNLMVGCLAFP-QCRNAVW 671
V K G C FP +C +W
Sbjct: 636 KQVSKGKNRGKWFYSCYTFPIKCDFFIW 663
>gi|350424370|ref|XP_003493773.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus impatiens]
Length = 851
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 238/638 (37%), Positives = 346/638 (54%), Gaps = 22/638 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS N R+G + I+E+ R + + MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILS-NGRCTSRKGLNGSCSIHEWIGQFRSENINFKMTSVFGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+L+ P K + I L +E C +L+LWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPRLKIPFLLAKEGAHCDYLILWLDCDKEGEN 123
Query: 131 IAFEVIE-VCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
I FEVI V + +N L + RARFSA+ +++I A+ NLV PN+ A +VDARQEID
Sbjct: 124 ICFEVIHAVQQGMNRRLNPNDIWRARFSAITEKDIKAALANLVRPNENEAKSVDARQEID 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +W
Sbjct: 184 LRIGCAFTRFQTKFFQGKYGDL---DVSLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPYW 239
Query: 247 TINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
+ + KS +G SW R FD A + + ATV V EK K P L
Sbjct: 240 VLQVTVKSSDGQDIILSWSRVRSFDKEIANMFLSHVKEYDQATVISVESTEKTKSRPIAL 299
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL + AS M H M++AE LY G+ISYPRTET + +L +++Q +P
Sbjct: 300 NTVELMRIASSGLGMGPHHAMQIAERLYTQGYISYPRTETTLYPENFDLLAALKQQQNNP 359
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +++L A G+ N G + HPPI P K ++ + D ++LY+ + RHF
Sbjct: 360 DWGDQVRKIL--ATGI--NRPKKGLNVGDHPPITPMKHAT-RNDLDGDTWRLYDYITRHF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQF 484
+A ++ T V+ I EVF+ +G + Y ++ +++ G +P + G++
Sbjct: 415 IATLAHDCKYLSTTVKFEIGMEVFTANGHSSIDPGYTNILTWQALGSNDTLPRFTPGEKV 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ L T+PP L+E++L+S M+K GIGTDA++ HI + R Y +
Sbjct: 475 NIQEMKLVECYTQPPDYLTESELISLMEKHGIGTDASIPVHINNICMRNYVNVTTGRKLV 534
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PT++G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 535 PTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQK 590
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
VK +EAM FE A+G+ +CG C+
Sbjct: 591 FHYFVKSIEAMDQLFE--VSFSPLSASGKAHSRCGKCR 626
>gi|432094881|gb|ELK26289.1| DNA topoisomerase 3-beta-1 [Myotis davidii]
Length = 836
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 229/642 (35%), Positives = 345/642 (53%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGTCSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNPGRGGEKTVFRARFSSITDTDICSAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSKKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGALRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P + S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKQLL--AEGI--NRPRKGHDAGDHPPITPMR-SATEAELGSEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS + + I E F+ + + +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSYDCKYLQNTISFRIGPEHFTCTVKTVISPGFTEIMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y + ++
Sbjct: 473 GDTFPVGEVKLLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVVVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADFRQVLGHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|146092141|ref|XP_001470217.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
gi|134085011|emb|CAM69411.1| putative DNA topoisomerase III [Leishmania infantum JPCM5]
Length = 867
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 230/637 (36%), Positives = 336/637 (52%), Gaps = 26/637 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
NVL VAEKPS+A+S+A ILS R R+R +YE+ + G P + +TS TGH+
Sbjct: 4 NVLMVAEKPSLAESIATILSNGSCSR----RTRALPVYEYTGNFMGSPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W D L+ AP+ + + LE E++ C LVLWLDCDREG
Sbjct: 60 FSCDFTSQHQNWDRTDEEQLFTAPITWK--DTSGKVSHHLEHESQGCDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R + H + RA FSA+ EI A +NL PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRREIYNHHSIFRAHFSAITAEEIFHAFRNLGKPNKNISDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTRFQT + + D V+SYGPCQ PTLGF V+R+ EI + E FW
Sbjct: 178 KVGVAFTRFQTKYFQGKYGDLDAS----VISYGPCQTPTLGFCVQRHDEILNFKPENFWR 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
+ F W RG LFD T A +I + + ATV V + P L+
Sbjct: 234 LVPVASRGGALLQFEWDRGRLFDETMARLILQRITKSGKVATVVNVSVSNDTRPRPTGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L K ASR + + M +AE+LY G+ISYPRTE+ ++ NL G + +Q H
Sbjct: 294 TVDLMKIASRALGIGPHYVMSIAENLYIRGYISYPRTESTAYPPSFNLAGALAQQKNHSM 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG Y LL + G D HPPI P + S+ S S D ++++E + RHF+
Sbjct: 354 WGAYVTALLQQGHARPK----AGKDAGDHPPITPMR-SASPSELSGDEWRIFEYITRHFI 408
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFI 485
A VS +T + I + GE+FS SG+V+ + ++ +PT VH G F
Sbjct: 409 ASVSPDCRLIKTKITIELGGELFSISGKVVEDPGFTEIMPHARVEDDRMPTGVHKGDSFQ 468
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + L +G T+PP L+E+DL+ M+K GIGTDA++ H+ +++R Y A P
Sbjct: 469 LSDVRLQAGQTQPPSYLTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKP 528
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+ +G L+ G + EL P +RS +E + ++ G DVL+ L +
Sbjct: 529 SKLGIVLIHGIKAIDPELVLPLVRSRVEEYVTHIAEGRAQLDDVLSYSL-DLFFAKFKFF 587
Query: 606 LKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ + + +A MG F S AAG+ + +CG C
Sbjct: 588 KEHIDVFDALMGASFSAIS------AAGKPITRCGNC 618
>gi|422293447|gb|EKU20747.1| DNA topoisomerase III [Nannochloropsis gaditana CCMP526]
Length = 870
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 231/639 (36%), Positives = 342/639 (53%), Gaps = 30/639 (4%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
VAEKPS+ ++A L + R GRS ++EF+ GQ + +TSVTGH+ D
Sbjct: 2 VAEKPSICNAIANALCAGAEMSTR-GRS--PPVHEFHGRFEGQSARIRVTSVTGHVFSTD 58
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIA 132
F +Y W + DP DL+ AP RK K I L E + LVLWLDCDREGENI
Sbjct: 59 FPGQYSNWEAVDPVDLFKAPTRKE--PTSKFITHHLASEGKGADILVLWLDCDREGENIC 116
Query: 133 FEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGA 191
FEVIE + H + RA FSA+ ++IH+A+Q L PN+ A +VDARQE+DL++G
Sbjct: 117 FEVIECMQPGFKAHTRILRAHFSAITPKDIHRALQKLGVPNKDEALSVDARQELDLKVGV 176
Query: 192 SFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCS 251
+F+RFQT + + D D LV SYGPCQ PTLGF V+R+ EIQ+ E+FW + +
Sbjct: 177 AFSRFQTRYFQGKYGDL---DATLV-SYGPCQTPTLGFCVQRHDEIQSFSPEKFWYLAAA 232
Query: 252 HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELE 311
+ W RG +FD+ A + + + + V KV++ E+ + P L+T+EL
Sbjct: 233 VAKDGANVALEWGRGRVFDHEVAHVFLHLVGEAGSVAVDKVQKSEQRRTKPTALNTVELL 292
Query: 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYA 371
K AS+ M TM VAE LY +G++SYPRTE+ ++ ++ G + Q+ HP WG YA
Sbjct: 293 KEASKVLGMGPAQTMSVAERLYLSGYLSYPRTESTAYPESFDVRGALSLQVSHPTWGDYA 352
Query: 372 QRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQ 431
+ LL R G D HPPI P + + + + D +LY+LV RHFLA +S
Sbjct: 353 KGLLQEGVSRPR----AGVDAGDHPPITPVR-ALDPTEFPGDMGRLYDLVTRHFLASLSH 407
Query: 432 PAVGAETIVEINI-AGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
A +T V + GE FS SG++++ YL V +S +P + G F ++L
Sbjct: 408 DARFLQTKVLFSSECGESFSASGKIMIDPGYLAVLA-QSKDESKLPDFQEGDHFTFSSLG 466
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
L G T PP L+E++L+ M+K GIGTDA++ HI +++R Y P +G+
Sbjct: 467 LGDGHTSPPGYLTESELIERMEKHGIGTDASISSHINNIVERNYVHVGDGRTLIPNPLGD 526
Query: 551 -------ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
LV GY + +L P +R+ +ES+ ++ G V+ + L+ +A F
Sbjct: 527 CGNILGIVLVHGYLRIDADLVLPKVRAQIESECTLIAKGQADMQSVVDHSLRNFEAKF-- 584
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ ++ M FE + A G+ + +CG C+
Sbjct: 585 --RYFAEHIDLMDSLFE--ATFSPLAATGKPLSRCGKCR 619
>gi|320587954|gb|EFX00429.1| DNA topoisomerase [Grosmannia clavigera kw1407]
Length = 636
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 213/531 (40%), Positives = 292/531 (54%), Gaps = 50/531 (9%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVT 65
+L VAEKPS++K+VAG LS Q Y K Y F + G P C + MT VT
Sbjct: 3 KILCVAEKPSISKAVAGHLSGGQ-------YQTYIKNYAFTFDF-GPPYGSCEVTMTCVT 54
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ ++ ++ W P L+ APV+ VP+DKK I + +E +AR + + +W DCD
Sbjct: 55 GHMTAMELSSEFKDWKYPPPERLFDAPVQTIVPDDKKTIAENIERQARYSRAVFIWTDCD 114
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E+ + R + +RRA FS + I A ++LV ++ DAV E+
Sbjct: 115 REGEHIGSEIRDAARKGKPTIEVRRAHFSNIERAHILNAARSLVALDERQVDAVSTHIEL 174
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DLRIG +FTRF T NL GP L +V
Sbjct: 175 DLRIGFAFTRFLT--------------NNLRALGGPLAELVLSYV--------------- 205
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
H ++ TA+F+W RGHLFD S +++YE C++ A V KV+++ + P PL
Sbjct: 206 -----KHTKDKATASFTWARGHLFDRASVIVLYERCLKAKKAEVVKVQEKPIKRMRPLPL 260
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+ L+ A+R+ ++ + M +AE LY GFISYPRTETD F G NL +VQ+Q P
Sbjct: 261 TTVTLQSMATRFLHVTGQQAMTMAETLYNKGFISYPRTETDRFDKGMNLRALVQKQTQDP 320
Query: 366 D-WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
WG +A+ LLD W P SG HDDKAHPPIHP +++ S D +LYELVVR
Sbjct: 321 QRWGAFARGLLDEGKFQW--PRSGQHDDKAHPPIHPITYAA-PSVLGPDEGRLYELVVRR 377
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQ 483
FLAC + A G + VEI E F G +L +NYLDVY +E+W +P +V G+
Sbjct: 378 FLACCADDAKGMASDVEIAYGSERFKAHGVHVLERNYLDVYPYENWTDTAELPPFVVGEI 437
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
F PT + G T P L+EADL++ MD GIGTDATM +HI+K+ DR Y
Sbjct: 438 FTPTEAVMAEGKTAAPGYLTEADLIALMDANGIGTDATMAEHIQKIQDRNY 488
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT +G AL+ G+D M +E L KP LR ME MK + G ++A VL L+Q +
Sbjct: 549 FVPTQLGVALIEGFDRMNFETSLGKPFLRKEMELQMKAICEGRTTRAAVLQENLRQYRRV 608
Query: 601 F 601
F
Sbjct: 609 F 609
>gi|260101066|gb|ACX31684.1| DNA topoisomerase III beta [Leishmania donovani]
Length = 866
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 231/637 (36%), Positives = 335/637 (52%), Gaps = 26/637 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
NVL VAEKPS+A+S+A ILS R R+R +YE+ + G P + +TS TGH+
Sbjct: 4 NVLMVAEKPSLAESIATILSNGSCSR----RTRALPVYEYTGNFMGSPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W D L+ AP+ K + LE EA+ C LVLWLDCDREG
Sbjct: 60 FSCDFTSQHQNWDRTDEEQLFTAPITWKDTSGK--VTHHLEHEAQGCDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R + H + RA FSA+ EI QA +NL PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRREIYNHHNIFRAHFSAITAEEIFQAFRNLGKPNKNISDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTRFQT + + D V+SYGPCQ PTLGF V+R+ EI + E FW
Sbjct: 178 KVGVAFTRFQTKYFQGKYGDLDAS----VISYGPCQTPTLGFCVQRHDEILNFKPENFWR 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
+ F W RG LFD T A +I + + ATV V + P L+
Sbjct: 234 LVPVASRGGALLQFEWDRGRLFDETMARLILQRITKNGKVATVVNVSVSNDTRPRPTGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L K ASR + + M +AE+LY G+ISYPRTE+ ++ NL G + +Q H
Sbjct: 294 TVDLMKIASRALGIGPHYVMSIAENLYIRGYISYPRTESTAYPPSFNLAGTLAQQKNHSM 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG Y LL + G D HPPI P + S+ S D ++++E + RHF+
Sbjct: 354 WGAYVTALLQQGHARPK----AGKDAGDHPPITPMR-SASPGELSGDEWRIFEYITRHFI 408
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFI 485
A VS +T + I + GE+F SG+V+ + ++ +PT VH G F
Sbjct: 409 ASVSPDCRLIKTKITIELGGELFGISGKVVEDPGFTEIMPHARVEDDRMPTGVHKGDSFQ 468
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + L +G T+PP L+E+DL+ M+K GIGTDA++ H+ +++R Y A P
Sbjct: 469 LSDVRLQAGQTQPPSYLTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKP 528
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+ +G L+ G + EL P +RS +E + ++ G DVL+ L +
Sbjct: 529 SKLGIVLIHGIKAIDPELVLPLVRSRVEEYVTHIAEGRAQLDDVLSYSL-DLFFAKFKFF 587
Query: 606 LKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ + + +A MG F S AAG+ + +CG C
Sbjct: 588 KEHIDVFDALMGASFSAIS------AAGKPITRCGNC 618
>gi|195996011|ref|XP_002107874.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
gi|190588650|gb|EDV28672.1| hypothetical protein TRIADDRAFT_49643 [Trichoplax adhaerens]
Length = 841
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/588 (36%), Positives = 328/588 (55%), Gaps = 17/588 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPS+A+S+A ILS+ ++ R+G ++ ++YE++ + GQ +TSV GH
Sbjct: 2 VVVLMIAEKPSLAQSIAKILSRGT-MKTRKGIAKPCQVYEYSGTFHGQQARFSVTSVCGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ LDF +Y W + DP DLY A V+K ++I K L+ E + +LVLWLDCDRE
Sbjct: 61 VYSLDFLPQYNNWDAVDPVDLYDAEVKKKDANPDQNIVKFLKHEGQGIDYLVLWLDCDRE 120
Query: 128 GENIAFEVIEVCRAV---NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
GENI FEVI++ + V + + RA+FSA+ D++I +A++ L+ PN+ A +VDARQE
Sbjct: 121 GENICFEVIDIVKPVMRNSSSQNIFRAKFSAITDKDIFRAMETLITPNKNEALSVDARQE 180
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF VER+ +I + E E+
Sbjct: 181 LDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SYGPCQTPTLGFCVERHDKINSFEPEK 236
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I+ + T W R +FD A + E + KV +K K P
Sbjct: 237 YWKIDVKVRHNNSTFALQWNRVRIFDKNVASMFCEDIKAVTRTKILKVTTTQKSKQKPIA 296
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+E+ ++AS + HTM +AE LY G+ISYPRTET ++ + ++ + H
Sbjct: 297 LNTVEMLRKASSGLNIGPHHTMALAERLYIQGYISYPRTETTTYPQNFDFRDLLGKLSSH 356
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
D G + LL + P G D HPPI P K +G + S D ++LY+ +VRH
Sbjct: 357 EDLGDTVKSLLKDG---YSKP-KKGQDAGDHPPITPMKV-AGRNELSGDSWRLYDYIVRH 411
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPTYVHGQQ 483
+L V + +T + I+ E F+ SG V+ + +L V + G +P G
Sbjct: 412 YLGSVMEDCRYTQTTYMVEISKESFTCSGAVVTSPGFLSVMNWLQQDEGQNLPNLDRGAV 471
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
T L T PP L+E++L++ M+K GIGTDA++ HI + +R Y + R
Sbjct: 472 LEITEAKLSEHQTSPPDYLTESELITLMEKHGIGTDASIPVHINNICERNYVKITGSRRL 531
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
PT +G L+ GY + +L P +R+ +E + ++ G KAD A
Sbjct: 532 QPTQLGIVLIHGYHKIDSDLALPTMRADVEKQLNLIAAG---KADFKA 576
>gi|156551898|ref|XP_001606777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Nasonia vitripennis]
Length = 852
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 232/639 (36%), Positives = 343/639 (53%), Gaps = 28/639 (4%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
VAEKPS+A S+A ILS N R+G + ++E+ R + + MTSV GH+M LD
Sbjct: 7 VAEKPSLAASLANILS-NGRCTTRKGSNGSCSVHEWLGQFRSETVNFKMTSVCGHVMSLD 65
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIA 132
F +Y W DPA+L+ P K K I L +E C +LVLWLDCD+EGENI
Sbjct: 66 FIGKYNNWDKVDPAELFSCPTEKKEAVPKLKIPSFLAKEGGYCDYLVLWLDCDKEGENIC 125
Query: 133 FEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
FEVI+ + + + + RA+FSA+ D++I A+ NL PN+ A +VDARQE+DLR
Sbjct: 126 FEVIQAVQQGSTRRLNPNDIWRAKFSAITDKDIKAALANLAKPNENEARSVDARQELDLR 185
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +W +
Sbjct: 186 IGCAFTRFQTKFFQGKYGDL---DASLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPYWVL 241
Query: 249 NCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+ K+ +G SW R FD A I + ATVT ++ EK K P L+T
Sbjct: 242 QVTVKTADGLDVVLSWSRVRSFDKEVANIFLSHVKEHDHATVTSIQSTEKSKARPIALNT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL + AS M H M++AE LY G+ISYPRTET S+ +L +++Q DW
Sbjct: 302 VELMRVASSGLGMGPHHAMQIAERLYTQGYISYPRTETTSYPENFDLVSTLKQQQNSSDW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G +R+L ++G+ + GHD HPPI P K S+ + D ++LY+ + RHF+A
Sbjct: 362 GDEVRRIL--SSGISK--PKKGHDAGDHPPITPMK-SASRNELDGDSWRLYDYITRHFIA 416
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTYVHGQQ 483
+++ T + I E FS +G ++ Y + +W L +P + G++
Sbjct: 417 TLAKDCKYLSTTAKFEIGMETFSVTGHSLIDPGYTSLL---TWQALSNNESLPRFSIGER 473
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
L T+PP L+E++L++ M+K GIGTDA++ HI + R Y +
Sbjct: 474 VKIQESKLLECFTQPPDYLTESELITLMEKHGIGTDASIPVHINNICIRNYVNVATGRKL 533
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT++G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 534 VPTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQ 589
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ ++AM FE A+G+ +CG C+
Sbjct: 590 KFHYFVQSIDAMDQLFE--VSFSPLSASGKSHSRCGKCR 626
>gi|307105927|gb|EFN54174.1| hypothetical protein CHLNCDRAFT_53167 [Chlorella variabilis]
Length = 860
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 240/664 (36%), Positives = 352/664 (53%), Gaps = 39/664 (5%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
P+ VL VAEKPS+AKS+A LS G R+ + + ++ F+ + RG+P MTSV G
Sbjct: 4 PVTVLMVAEKPSLAKSIAEFLS---GGRMSSRHTNLD-VHTFDATFRGRPAQFKMTSVIG 59
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H++ +DF Y+ W DP L+ AP K K + + L+ EA+ +LVLWLDCDR
Sbjct: 60 HVLSIDFPAEYQSWDKTDPGTLFDAPTIKCEANPKARVCRHLQGEAKGADYLVLWLDCDR 119
Query: 127 EGENIAFEVIE-VCRAVN--CHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGENI FEV++ R +N + RARFSA+ EI QA+ +LV+PN+ A AVDARQ
Sbjct: 120 EGENICFEVMDNTVRWMNRVADQQVYRARFSAISAPEIRQAMASLVEPNRAEALAVDARQ 179
Query: 184 EIDLRIGASFTR---FQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
E+DL++G +FTR FQ+ K ++DS V+SYGPCQ PTL F VER+ I
Sbjct: 180 ELDLKVGVAFTRGCRFQSRFFQAKYGNLDSA------VISYGPCQTPTLNFCVERHQAIV 233
Query: 239 AHESEEFWTINCSHKSEEGTA-TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+ + E FW + S+ G A W RG +FD + ++ V E V+ +
Sbjct: 234 SFQPEPFWVVR-PRASQAGHALNLEWGRGRVFDGEVGAV-FQRLVHE-AKQVSMILTPVD 290
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
+ PP L +EL K AS + + M+VAE LY G++SYPRTE+ ++ + H +
Sbjct: 291 PRDPPC-LCAVELLKTASSSLGIGPAYAMQVAERLYTQGYLSYPRTESTAYPPNFDFHTL 349
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ Q HP WG YA L+ G + P GG D HPPI P + +S D ++L
Sbjct: 350 LAAQRAHPVWGEYAASLM----GAFAAP-KGGVDVGDHPPITPVRCASEAELGGGDTWRL 404
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
Y+ V RHFL +S V +T + E F+ SG ++L Y + +++ +P
Sbjct: 405 YDFVARHFLGSLSPDCVVRKTRASLAAGTESFAASGTLVLRPGYAAIMPWKAVQNEPLPP 464
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G + + L G T PP L+EA+L+ M+K GIGTDA++ HI + +R Y
Sbjct: 465 MKAGDTIPMSEVELHQGKTSPPDYLTEAELIERMEKHGIGTDASIPTHINNICERNYVSI 524
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
+ R PT +G LV GY + EL +P +R+ +E + V+ G K V+A+CL++
Sbjct: 525 QSGRRVVPTELGITLVRGYQLIDPELCRPQVRAHVEHQLDLVAKGQADKEAVVAHCLEEF 584
Query: 598 --KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
K F A +++ M FE + ++G+V+ +CG C M L SR
Sbjct: 585 RQKFAFFVAHIQR------MDALFE--ASFSPLASSGKVLSKCGKCNRF-MRLIASRPSR 635
Query: 656 LMVG 659
L G
Sbjct: 636 LYCG 639
>gi|357611732|gb|EHJ67631.1| putative prokaryotic DNA topoisomerase [Danaus plexippus]
Length = 848
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 227/651 (34%), Positives = 347/651 (53%), Gaps = 43/651 (6%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
L VAEKPS+A+++A ILS N +G + ++E+ + + +P MTSV GH+
Sbjct: 3 TALMVAEKPSLAQNLANILS-NGKCNTNKGSNSACAVHEWTGTFKNEPVKFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF +Y W DP +L+ P K + I L +EAR C +L+LWLDCD+EG
Sbjct: 62 MSLDFTGKYNNWDKVDPVELFICPTEKKEAMPRLRIPAFLAQEARGCDYLILWLDCDKEG 121
Query: 129 ENIAFEVIEVCRA-----VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV+ + V V RARFSA+ D++I A+ NLV PN+ + +VDARQ
Sbjct: 122 ENICFEVMSCVQNYMKGDVYSPAVTFRARFSAITDKDIKTAMMNLVRPNESESRSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQTKYFQGRYGDL---DASLI-SYGPCQTPTLGFCVQRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTAT-FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + + + EG W R F+ A + + ATV ++ +EK+K P
Sbjct: 238 TYWVLRVTASTSEGRELPLEWKRVRSFEKDIANMFLVGIKEFKEATVVNIQAKEKIKSRP 297
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+EL + AS M H M++AE LY G+ISYPRTET S+ +L G +++Q
Sbjct: 298 TALNTVELMRVASAGLGMGPHHAMQIAERLYTQGYISYPRTETTSYGENFDLIGSLRQQQ 357
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG + LL A G+ N GHD HPPI P K +S ES D +++Y+ +
Sbjct: 358 NSNKWGSEVRALL--ANGI--NKPKKGHDAGDHPPITPMKPAS-ESELEGDMWRIYDYIT 412
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHF+A +S+ T + ++ E F +G ++ Y ++ ++++G
Sbjct: 413 RHFIATLSRDCRYLSTTLTFSVGSETFYYTGNTLVDAGYTEIMHWQAFG---------KD 463
Query: 483 QFIPTTLTLDSGV-----------TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
+F+P L +D + T PP L+E+++++ M+K GIGTDA++ HI +
Sbjct: 464 EFVP-VLKVDEVLRAHDHRLVECQTSPPDYLTESEVITLMEKHGIGTDASIPVHINNICQ 522
Query: 532 RFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
R Y + R PT++G LV GY + EL P +RS +E + +++G VL
Sbjct: 523 RNYVSVGSGRRLVPTSLGVVLVHGYQKIDPELVLPTMRSAVEEQLNLIAIGRADFHAVLT 582
Query: 592 NCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ + + F V+ +EAM FE + +G+ + +CG C+
Sbjct: 583 HTTEIFRRKF----QYFVRSIEAMDQLFE--VSFSSLKTSGKALSRCGKCR 627
>gi|340722711|ref|XP_003399746.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Bombus terrestris]
Length = 851
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 236/638 (36%), Positives = 345/638 (54%), Gaps = 22/638 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS N R+G + I+E+ R + + MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILS-NGRCTSRKGLNGSCSIHEWIGQFRSENINFKMTSVFGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+L+ P K + I L +E C +L+LWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPRLKIPFLLAKEGAHCDYLILWLDCDKEGEN 123
Query: 131 IAFEVIE-VCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
I FEVI V + +N L + RARFSA+ +++I A+ NLV PN+ A +VDARQEID
Sbjct: 124 ICFEVIHAVQQGMNKRLNPNDIWRARFSAITEKDIKAALANLVRPNENEAKSVDARQEID 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +W
Sbjct: 184 LRIGCAFTRFQTKFFQGKYGDL---DVSLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPYW 239
Query: 247 TINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
+ + K+ +G SW R FD A + + ATV V EK K P L
Sbjct: 240 VLQVTVKTSDGQDIILSWSRVRSFDKEIANMFLSHVKEYDQATVISVESTEKTKSRPIAL 299
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL + AS M H M++AE LY G+ISYPRTET + +L +++Q +P
Sbjct: 300 NTVELMRIASSGLGMGPHHAMQIAERLYTQGYISYPRTETTLYPENFDLLAALKQQQNNP 359
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +++L A G+ N G + HPPI P K ++ + D ++LY+ + RHF
Sbjct: 360 DWGDQVRKIL--ATGI--NRPKKGLNVGDHPPITPMKHAT-RNDLDGDTWRLYDYITRHF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQF 484
+A ++ T V+ I E+F +G + Y ++ +++ G +P + G++
Sbjct: 415 IATLAHDCKYLSTTVKFEIGMEMFMANGHSSIDPGYTNILTWQALGSNDTLPKFTPGEKV 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ L T+PP L+E++L+S M+K GIGTDA++ HI + R Y +
Sbjct: 475 NIQEMKLVECYTQPPDYLTESELISLMEKHGIGTDASIPVHINNICMRNYVNVTTGRKLV 534
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PT++G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 535 PTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQK 590
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
VK +EAM FE A+G+ +CG C+
Sbjct: 591 FHYFVKSIEAMDQLFE--VSFSPLSASGKAHSRCGKCR 626
>gi|380025214|ref|XP_003696372.1| PREDICTED: DNA topoisomerase 3-beta-1 [Apis florea]
Length = 851
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 233/638 (36%), Positives = 345/638 (54%), Gaps = 22/638 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS N R+G + ++E+ R + + MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILS-NGRCTSRKGLNGSCSVHEWIGQFRSETVNFKMTSVFGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+L+ P K + I L +E C +LVLWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPRLKIPYFLAKEGAHCDYLVLWLDCDKEGEN 123
Query: 131 IAFEVI-EVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
I FEVI V + +N L + RARFSA+ +++I A+ NL+ PN+ A +VDARQE+D
Sbjct: 124 ICFEVIYAVQQGMNKRLNPNDIWRARFSAITEKDIKSALVNLIKPNENEAKSVDARQELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +W
Sbjct: 184 LRIGCAFTRFQTKFFQGKYGDL---DVSLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPYW 239
Query: 247 TINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
+ + KS +G +W R FD A + + AT+ V EK K P L
Sbjct: 240 VLQVTVKSSDGQDIILNWTRVRSFDKEIANMFLSHVKEYDQATIISVESTEKTKSRPIAL 299
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL + AS M H M++AE LY G+ISYPRTET + +L +++Q +P
Sbjct: 300 NTVELMRVASSGLGMGPHHAMQIAERLYTQGYISYPRTETTLYPENFDLLAALKQQQNNP 359
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +++L G+ N G + HPPI P K ++ + D ++LY+ + RHF
Sbjct: 360 DWGDQVRKIL--TTGI--NRPKKGCNVGDHPPITPMKHAT-RNELDGDTWRLYDYITRHF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQF 484
+A ++ T V+ I E+F+ +G +L Y + +++ G +P + G++
Sbjct: 415 IATLAHDCKYLSTTVKFEIGMEIFTANGHSLLDPGYTSILTWQTLGSNDNLPRFTPGEKV 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ L T+PP L+E++L+S M+K GIGTDA++ HI + R Y +
Sbjct: 475 NIQEIKLVECYTQPPDYLTESELISLMEKHGIGTDASIPVHINNICMRNYVNVATGRKLV 534
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PT++G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 535 PTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQK 590
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
VK +EAM FE A+G+ +CG C+
Sbjct: 591 FHYFVKNIEAMDQLFE--VSFSPLSASGKAHSRCGKCR 626
>gi|148228452|ref|NP_001082554.1| topoisomerase (DNA) III beta [Xenopus laevis]
gi|28422192|gb|AAH46848.1| MGC53016 protein [Xenopus laevis]
Length = 858
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 232/646 (35%), Positives = 348/646 (53%), Gaps = 32/646 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ R+G + ++E+ S GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGNA-SSRKGLNGACSVHEYTGSFMGQNVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEGRSCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RA+FS++ D +I A+ L +PN+ A +VDAR
Sbjct: 122 GENICFEVLDAIHPVMNKAHGGERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWT--INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
E +W + SH +E + W R +FD A + + A V V ++EK K
Sbjct: 238 ETYWVLQVKVSH-GQEHPLSLDWDRVRVFDREIAQMFINITKTAKEAQVESVSKKEKAKQ 296
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++
Sbjct: 297 RPQALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLKQ 356
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q +P W + LL A G+ N G D HPPI P + S+ ES D ++LYE
Sbjct: 357 QANNPFWADTVKTLL--AEGI--NRPRKGADAGDHPPITPMR-SATESELGGDAWRLYEY 411
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIP 476
+ RHF+A +S +T + ++ E+F+T+ + +++ + ++ W G+
Sbjct: 412 ITRHFIATISHDCKYLQTSIAFSVGPEMFTTTCKEVISPGFTEIM---PWQGIPKEESFE 468
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
+ G +F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 469 SCQRGDKFSVDEMKLVEKQTCPPDYLTEAELITLMEKHGIGTDASIPVHINNVCQRNYVT 528
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
++ R PT++G LV GY + EL P +RS +E + ++ G + VL + L
Sbjct: 529 VESGRRLKPTSLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKANFQQVLDHTLDI 588
Query: 597 MKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
K F + E M + F + A G+ + +CG C
Sbjct: 589 FKRKFHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|66509929|ref|XP_625165.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Apis
mellifera]
Length = 851
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 232/638 (36%), Positives = 345/638 (54%), Gaps = 22/638 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS N R+G + ++E+ R + + MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLANILS-NGRCTSRKGLNGSCSVHEWIGQFRSETVNFKMTSVFGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+L+ P K + I L +E C +LVLWLDCD+EGEN
Sbjct: 64 LDFIGKYNNWDKVDPAELFSCPTEKKEAVPRLKIPYFLAKEGAHCDYLVLWLDCDKEGEN 123
Query: 131 IAFEVI-EVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
I FEVI V + +N L + RARFSA+ +++I A+ NL+ PN+ A +VDARQE+D
Sbjct: 124 ICFEVIYAVQQGMNKRLNPNDIWRARFSAITEKDIKSALVNLIKPNENEAKSVDARQELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + + +W
Sbjct: 184 LRIGCAFTRFQTKFFQGKYGDL---DVSLI-SYGPCQTPTLGFCVQRHDEIQTFKPDPYW 239
Query: 247 TINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
+ + KS +G +W R FD A + + AT+ V EK K P L
Sbjct: 240 VLQVTVKSSDGQDIILNWTRVRSFDKEIANMFLSHVKEYDQATIISVESTEKTKSRPIAL 299
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL + AS M H M++AE LY G+ISYPRTET + +L +++Q +P
Sbjct: 300 NTVELMRVASSGLGMGPHHAMQIAERLYTQGYISYPRTETTLYPENFDLLAALKQQQNNP 359
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
DWG +++L G+ N G + HPPI P K ++ + D ++LY+ + RHF
Sbjct: 360 DWGDQVRKIL--TTGI--NRPKKGCNVGDHPPITPMKHAT-RNELDGDTWRLYDYITRHF 414
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQQF 484
+A ++ T ++ I E+F+ +G +L Y + +++ G +P + G++
Sbjct: 415 IATLAHDCKYLSTTIKFEIGMEIFTANGHSLLDPGYTSILTWQALGSNDNLPRFTPGEKV 474
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ L T+PP L+E++L+S M+K GIGTDA++ HI + R Y +
Sbjct: 475 NIQEIKLVECYTQPPDYLTESELISLMEKHGIGTDASIPVHINNICMRNYVNVATGRKLV 534
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PT++G LV GY + EL P +RS +E + +++G +AD A LQ F
Sbjct: 535 PTSLGIVLVHGYQKIDPELVLPTMRSAVEEQLNLIALG---RADFHA-VLQHTVEIFKQK 590
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
VK +EAM FE A+G+ +CG C+
Sbjct: 591 FHYFVKNIEAMDQLFE--VSFSPLSASGKAHSRCGKCR 626
>gi|115479969|ref|NP_001063578.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|113631811|dbj|BAF25492.1| Os09g0500600 [Oryza sativa Japonica Group]
gi|215695029|dbj|BAG90220.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 866
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 225/637 (35%), Positives = 342/637 (53%), Gaps = 25/637 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A S+A LS + + R+G + ++EF+ +G +TSV GH+
Sbjct: 4 TVLMVAEKPSIALSIASALSGGR-MSTRKGST---DVHEFDGMFQGSHAFFKVTSVIGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ +DF Y+ W DP DL+ APV + K I++ L +EAR C +LVLWLDCDREG
Sbjct: 60 LSVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREG 119
Query: 129 ENIAFEVIEVCRAVNCHLVLRR---ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
ENI +EVI+ C + V RR A+FS++ +++I A+ NLV P++ A AVDARQEI
Sbjct: 120 ENICYEVID-CTGIPKSEVGRRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEI 178
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DL++G +FTRFQT + + + D R V+SYGPCQ PTLGF V+RY +I + E+F
Sbjct: 179 DLKVGVAFTRFQTRYFQGKYGN--LDSR--VISYGPCQTPTLGFCVQRYQQITTFKPEKF 234
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W++ + W R LFD+ V+ +M + VT + +E+ K P L
Sbjct: 235 WSLKTYVIKDGNEIQLEWDRKKLFDFDVTVMFQKMVASDGILKVTDISVKEECKARPPGL 294
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+ L K AS + + M +AE LY GFISYPRTE+ ++ S + + +P
Sbjct: 295 NTVNLLKVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNP 354
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
W + LLD + P GHD HPPI P + ++ E+ D ++LY+ + +HF
Sbjct: 355 LWSNDVRTLLDTG---FVKPKQ-GHDAGDHPPITPMRLATEEA-LGTDAWRLYQYICQHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
+ VS T +E GE F G + +K + + + + IP Y G
Sbjct: 410 IGTVSPDCRYTRTSIEFTSGGETFHCVGNRVTSKGFTSIMPWLAVSENNIPAYKKGDAVS 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + G T PP LSE++L+S M+K GIGTDA++ H+ + +R Y ++ R P
Sbjct: 470 IHKVDIYEGSTTPPDYLSESELISLMEKNGIGTDASIPVHVNNICERNYVQVNSGRRLVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T +G L+ GY + +L P++R +E + ++ G V+ + LQQ F+
Sbjct: 530 TPLGTTLIRGYQCIDADLCLPDIRRFIEQQITLIAKGEADHLQVVQHVLQQ----FMKKY 585
Query: 606 LKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
VK +E M FE ++S D +G ++ +CG C
Sbjct: 586 SYFVKKIENMDALFEAQFSPLAD---SGRLLSKCGKC 619
>gi|221505540|gb|EEE31185.1| DNA topoisomerase III beta-1, putative [Toxoplasma gondii VEG]
Length = 842
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 234/644 (36%), Positives = 341/644 (52%), Gaps = 31/644 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+++A ILS R+G S ++EF+ S RG+ +TS GH+
Sbjct: 5 VLMVAEKPSIAETIARILSGGN-FHKRKGISPVTSVWEFSGSFRGEAVLFKVTSTAGHIY 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+ DF ++ W +P +L+ APV K K + L++EA C+ LVLWLDCDREGE
Sbjct: 64 QTDFPRQFNDWEKTNPIELFDAPVVKVEANAKHRLPAHLQKEAHGCKHLVLWLDCDREGE 123
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+ RA+FSAL +I QA++ L PN+ AD+VDARQE+DL++
Sbjct: 124 NICFEIW-------------RAKFSALAPADIQQAMRTLGTPNKNEADSVDARQELDLKV 170
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
G +FTRFQT + + D D +LV SYGPCQ PTL F V+RY +I A + E F+T+
Sbjct: 171 GCAFTRFQTQYFQGKYGDL---DASLV-SYGPCQTPTLQFCVQRYDDIHAFQPETFYTVC 226
Query: 250 CS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMC-VQEPTATVTKVRQQEKLKYPPYPLST 307
S E W RG +FD +A ++ + A V V ++E+ P L+T
Sbjct: 227 KSVFDLREQELFLEWERGQVFDSVTAHTYKDIVSARGAVAVVVDVTEKEEKMPRPQALNT 286
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ + K AS+ M + M+ AE LY +G ++YPRTET + +L G Q +P W
Sbjct: 287 VNMLKLASQRLGMGPQQAMQTAERLYLSGKVTYPRTETCKYPESFDLRGTAAAQASNPYW 346
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G Y + LL ++GL R G D HPPI P ++ D + LYEL+ RHFLA
Sbjct: 347 GGYVKELL--SSGLARP--RDGVDAGDHPPITPVCSATEADVGGGDAWALYELITRHFLA 402
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
+S + V + E+FS SGR +L + + R + + IP + Q
Sbjct: 403 SISPDCRFLKRKVTFCVNEEIFSLSGRHMLDGGFTRIMRGDGMKDVSIPDFRKADQVPLH 462
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+++ SG T PPP LSE+DLL M+K GIGTDA+M HI + +R Y +N R PT
Sbjct: 463 KISVGSGQTHPPPFLSESDLLGLMEKHGIGTDASMATHINNICERNYVSLVSNRRLEPTK 522
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G LV GY + +L P++R+ +E+ + ++ G V+ + L K F
Sbjct: 523 LGVCLVHGYMQIDPDLVLPSVRASIEALVDVIAQGKADITAVVTHSLYMFKLKF----AY 578
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE-SNMVLKK 650
+K +E M + FE Q G + +CG C N++ K+
Sbjct: 579 FLKQIERMDMLFEASFTMLAQ--TGSALSRCGRCNRYMNLITKR 620
>gi|417405013|gb|JAA49232.1| Putative dna topoisomerase iii alpha [Desmodus rotundus]
Length = 862
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 226/642 (35%), Positives = 339/642 (52%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E+ + GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SMSSHKGLNGTCSVHEYTGTFAGQTVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNPAHGGDKTVFRARFSSITDTDICNAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDRIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL R GHD HPPI P + S+ E+ + ++LYE +
Sbjct: 358 ANHPYWAETVKRLLVEGINRPRK----GHDAGDHPPITPMR-SATEAELGSEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS + + I E F+ + + +++ + ++ ++S +P
Sbjct: 413 TRHFIATVSYDCKYLQNTISFRIGPEHFTCTVKTVISPGFTEIMPWQSVPLEESLPPCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y + ++
Sbjct: 473 GDTFPVAEVKLLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVVVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|296810820|ref|XP_002845748.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
gi|238843136|gb|EEQ32798.1| DNA topoisomerase III [Arthroderma otae CBS 113480]
Length = 637
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 233/653 (35%), Positives = 338/653 (51%), Gaps = 86/653 (13%)
Query: 10 VLNVAEKPSVAKSVAG-----ILSKNQGLRIREG--RSRYNKIYEFNYSI-RGQPCHMLM 61
VL VAEKPS+AK++A +++ + + ++ + Y K YEF+Y+ + C + M
Sbjct: 6 VLCVAEKPSIAKAIANHLGDRVITVLELMDVQHNIQGNPYVKNYEFDYTFPQWGHCSVTM 65
Query: 62 TSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLW 121
TSV GHL+ +F+ RY+ W SCDP+ L+ A + V + + I ++ ARR L +W
Sbjct: 66 TSVLGHLLSHEFEPRYKSWTSCDPSALFDARIEVFVGSNSEPIADNIKRHARRADVLFIW 125
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DC E ++A + + + RA FS + I A D ++ A++V +
Sbjct: 126 TDCT-EIRSVAAQSNQALGRAGGTV---RAHFSNIERTHIIHAAHRPADLDEAQANSVAS 181
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E+DLR+GASFTR T+ L+ + + ++SYG CQFPTLGF+VERYW ++
Sbjct: 182 RIELDLRVGASFTRHLTLSLRPILQRGNLSEASQLISYGSCQFPTLGFIVERYWRVRNFI 241
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E FW+I H+ FSW R HLFD +AVI+YE C+ A V KV+ + K+
Sbjct: 242 PEPFWSIKLMHRKAGKRVNFSWARKHLFDRRTAVILYERCLTSQNAQVQKVKTRPTSKWK 301
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL+T+EL+K SR+F M S+ +++AE LYQ G+ISYPRTETD F G +L G+VQ+Q
Sbjct: 302 PLPLTTLELQKCGSRFFGMDSQKVLQLAEKLYQKGWISYPRTETDQFDRGMDLRGLVQKQ 361
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
W YA L++ G + P +G ++DKAHPPIHP F + + S + ++E V
Sbjct: 362 AQGGRWADYATALVE---GGFSWPRNGHNNDKAHPPIHPVNFVN-PTTLSHEEQCIHEFV 417
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR FLAC S+ A G++T + I E F SG VIL L + F G
Sbjct: 418 VRRFLACCSKDAQGSKTDISILHGPETFHASGLVILE---LSMSTFTIGGAT-------- 466
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ F ++ TL PP L+E DLL+ M+ GIGTDATM DHI ++DR Y A
Sbjct: 467 KNFPRSSKTL------PPGYLTEPDLLALMNANGIGTDATMADHIVTIIDRQYVEARAQP 520
Query: 542 R---------------------------------------------------FAPTNIGE 550
R F PT +G
Sbjct: 521 RQARHGNDEEEPEELPAQARGRNGRRGRTAVAPRGGRNSGAGRGGAITGVREFIPTTLGV 580
Query: 551 ALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
ALV G+++MG+E L KP LR ME M + G +K V+ ++Q + +
Sbjct: 581 ALVEGHENMGFETNLMKPFLRKEMELKMNAICNGQTTKTQVVNETIEQYRGVY 633
>gi|342186003|emb|CCC95488.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 838
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 217/588 (36%), Positives = 327/588 (55%), Gaps = 17/588 (2%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A LS + +R R+R ++E++ G P H +TS TGH+
Sbjct: 4 TVLMVAEKPSIAESIAHHLSNGRAVR----RTRALPVFEYDGHFHGGPAHFRVTSTTGHI 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W + L+ APV E+ + + L EA C LVLWLDCDREG
Sbjct: 60 FSCDFTPQHQSWDRTEEEVLFGAPVVWR--EESGRVSRHLAHEAEGCATLVLWLDCDREG 117
Query: 129 ENIAFEVIEVC-RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R++ + RA+FSA+ I A NL PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVERSIRDMRNIWRAKFSAITQEAITYAFMNLCKPNKNLSDAVSCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G FTR+QT + + D D N+V SYGPCQ PTL F V+R+ EI + E +W
Sbjct: 178 KVGVVFTRYQTKYFQGKYGDL---DANVV-SYGPCQTPTLAFCVQRHDEILNFKPENYWK 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+ + TF W+RG +FD A +I++ + TA V V + P L+T
Sbjct: 234 LVPTTNRFGAPVTFEWVRGRVFDELIARLIHQRLSRLRTAKVIDVSVAPDTRARPVALNT 293
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL K AS+ + H M++AE+LY AG+ISYPRTE+ ++ + +L G + Q HP W
Sbjct: 294 VELMKVASKLLGIGPHHAMQLAENLYIAGYISYPRTESTAYPASFDLRGALATQERHPLW 353
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G + Q LL G P G D HPPI P + ++ S S + +KLYE + RHF+A
Sbjct: 354 GDHVQGLLK---GRHTRP-KAGKDAGDHPPITPMRAATA-SDMSSESWKLYEYITRHFIA 408
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFIP 486
VS A T V +++ GE+F+ +G+V+ + V + +PT + G F
Sbjct: 409 TVSSDCKLARTRVVLDLGGEIFTYTGKVVEDPGFTAVLTHLAVKDDKVPTNIEVGSDFPI 468
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ + L +G T+PP L+EADL+ M+K GIGTDA++ H+ +++R Y + PT
Sbjct: 469 SDVRLQAGQTQPPGYLTEADLIGLMEKNGIGTDASISQHVNNVVERGYCVVKPGRVMEPT 528
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
+G L+ G + EL P +RS +E + ++ G ++ +VL++ L
Sbjct: 529 KLGVVLIHGIKSIDPELVLPLVRSKVEEYVTCIAEGQATREEVLSSVL 576
>gi|343424117|emb|CCD17943.1| DNA topoisomerase III, putative [Trypanosoma vivax Y486]
Length = 726
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 208/488 (42%), Positives = 284/488 (58%), Gaps = 22/488 (4%)
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
+DCDREGENI FEV+ V + VN + + RA F+AL R++ AV NL PN+ +DAV+A
Sbjct: 1 MDCDREGENICFEVMSVVQTVNRQIEVCRAHFNALTRRDLFTAVHNLKTPNKALSDAVEA 60
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
RQEIDL IGA F+RFQT+ ++ D VLS+GPCQ PTLGFVV R WE +
Sbjct: 61 RQEIDLGIGAVFSRFQTIKFRDMF-----RDMPRVLSFGPCQIPTLGFVVRRSWEQRGFV 115
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEM----CVQEPTATVTKVRQQEK 297
EE++T+ H G FS RG ++D +A ++ E ++P A VT+V Q+
Sbjct: 116 PEEYFTLALHH----GQTVFSSCRGSMYDQIAATLVLEAMQESASEKPEAEVTEVVQRPN 171
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN-LHG 356
++P PL+T+ L+K A+ + R+SSE M AE LYQ G++SYPRTETDSFS N L
Sbjct: 172 RRHPSVPLATVVLQKLAATHLRISSEQCMMWAESLYQEGYVSYPRTETDSFSLTDNELLE 231
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF--SSGESRWSQDH 414
I Q G+ + G Y +L +R P GHDDKA P I+PTK SS + R
Sbjct: 232 IAGLQSGNSEVGQYVSAMLGDRQNRFRRPLRCGHDDKAFPQIYPTKLMPSSNDPRM---- 287
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
LY L+VRHFLACVS V A T V E F+TSG +L + +L+VY +E W
Sbjct: 288 -PLYNLIVRHFLACVSPDNVAATTSVNAVFGEEKFTTSGTAVLERGWLEVYPYERWHSTC 346
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
IP Y ++F PT + L+ T PP L+EA+L++ M+K GIGTDAT+ +IK +LDR
Sbjct: 347 IPAYKRVERFTPTAVNLERHRTTPPSTLTEANLIALMNKHGIGTDATVAQYIKTVLDREC 406
Query: 535 AIKDANTRFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
K T T G AL Y+ +G L +P LR+ ME M +++ G +K +V+
Sbjct: 407 VKKREGTSLVLTTFGNALASAYEAVGLVSLLQPQLRAQMELAMADIATGKATKEEVVGAA 466
Query: 594 LQQMKACF 601
+ + F
Sbjct: 467 VHLYREIF 474
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C ++M L++S++G + + C +P C +V LP + V C SC+
Sbjct: 628 IAQCRSCMGNDMRLRQSQNG-VFLSCRGYPSCTFSVNLPRAKRIRPVPEGRCASCS---A 683
Query: 695 YLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSR 737
L+QF+F + PG C+ CD ++ + + G ++
Sbjct: 684 LLLQFEFGGMQTVPGVMEGDHMCV-FCDVRFQEYVTVKGRNTQ 725
>gi|307219265|ref|NP_001182501.1| topoisomerase (DNA) III beta isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 858
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 230/645 (35%), Positives = 343/645 (53%), Gaps = 30/645 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ R+G + ++E+ S GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGSA-SSRKGLNGACSVHEYTGSFMGQTVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K + K L+ E R C ++VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ RA + RA+FS++ D +I A+ L +PN+ A +VDAR
Sbjct: 122 GENICFEVLDAIHPVMNRAHGGERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + +E W R +FD A + + A V V ++EK K
Sbjct: 238 ETYWVLQVKVSRGQENPLILDWDRVRVFDREIAQMFINITKTAKEAQVESVSKKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PQALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL A G+ N G D HPPI P + S+ E+ D ++LYE +
Sbjct: 358 ANNPFWADMVKTLL--AEGI--NRPRKGTDAGDHPPITPMR-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH- 480
RHF+A +S +T + ++ E F+T+ + +++ + ++ W G+
Sbjct: 413 TRHFIATISHDCKYLQTSIAFSVGPEKFTTTCKEVISPGFTEIM---PWQGIPKEESFQP 469
Query: 481 ---GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G +F + L T PP L+EA+L+S M++ GIGTDA++ HI + R Y
Sbjct: 470 CERGDKFSVDEMKLMEKQTCPPDYLTEAELISLMERHGIGTDASIPVHINNICQRNYVTV 529
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
++ R PT++G LV GY + EL P +RS +E + ++ G + VL + L
Sbjct: 530 ESGRRLKPTSLGIVLVHGYYKIDPELVLPTIRSAVEKQLNLIAQGKANFQQVLDHTLDIF 589
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
K F + E M + F + A G+ + +CG C
Sbjct: 590 KRKFHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
>gi|195041892|ref|XP_001991334.1| GH12112 [Drosophila grimshawi]
gi|193901092|gb|EDV99958.1| GH12112 [Drosophila grimshawi]
Length = 862
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 228/640 (35%), Positives = 343/640 (53%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
NVL VAEKPS+A S+A ILS + + G + + YE++ + R + H MTSV GH
Sbjct: 3 NVLMVAEKPSLAASLAAILSNGRCTAAKRGINSCS-TYEWSGNFRNEGTVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF +Y W DP +L+ P K K+ ++ L +EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFISKYTSWDKVDPVELFGCPTEKKECNPKQQMRTFLSQEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ V V H V RA FSA+ D++I A+ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVQHVIHNVYSHNVTYRAHFSAITDKDIKGAMDKLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQTKFFQGRYGDL---DSSLI-SYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E + P
Sbjct: 238 TFWYLQLLAGQPE--FTLEWARGRVFKKDIAIMLLNRVKEHKEATVESVSSKESFRSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M+ AE LY G+ISYPRTET+ + +LH +++
Sbjct: 296 ALNTVELMRICSSGLGIGPYQAMQFAERLYTQGYISYPRTETNQYPENFDLHAVLRVLQP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ + A ++ P G D HPPI P K ++ + + +D +++YE + R
Sbjct: 356 SSDFGEEARAI----AADFQTP-RKGKDAGDHPPITPMKLAN-RNEFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HFL +S+ T ++ E FS + V+L Y V + ++G +P +V G
Sbjct: 410 HFLGTISRDLKYRTTTAKLRAGIESFSCTANVLLDAGYTKVMTWLAFGKDEPMPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP L+EA+L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 QVAINDVRLAESQTGPPDYLTEAELITLMEQHGIGTDASIPVHINNICQRNYVRIETGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +RS +E + ++ G+ + DVL + + K F+
Sbjct: 530 LIPTTLGIVLVHGYQKIDPELVLPTMRSEVERMLTLIAKGSANFNDVLRHAIIIFKLKFM 589
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ + +M + FE S +G+ +CG C+
Sbjct: 590 FF----VQNIASMDMLFE--SSFSPLAESGKAHSRCGKCR 623
>gi|218202402|gb|EEC84829.1| hypothetical protein OsI_31918 [Oryza sativa Indica Group]
Length = 866
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 224/637 (35%), Positives = 341/637 (53%), Gaps = 25/637 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A S+A LS + + R+G + ++EF+ +G +TSV GH+
Sbjct: 4 TVLMVAEKPSIALSIASALSGGR-MSTRKGST---DVHEFDGMFQGSHAFFKVTSVIGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ +DF Y+ W DP DL+ APV + K I++ L +EAR C +LVLWLDCDREG
Sbjct: 60 LSVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREG 119
Query: 129 ENIAFEVIEVCRAVNCHLVLRR---ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
ENI +EVI+ C + V RR A+FS++ +++I A+ NLV P++ A AVDARQEI
Sbjct: 120 ENICYEVID-CTGIPKSEVGRRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEI 178
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DL++G +FTRFQT + + + D R V+SYGPCQ PTLGF V+RY +I + E+F
Sbjct: 179 DLKVGVAFTRFQTRYFQGKYGN--LDSR--VISYGPCQTPTLGFCVQRYQQITTFKPEKF 234
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W++ + W R LFD+ V+ +M VT + +E+ K P L
Sbjct: 235 WSLKTYVIKDGNEIQLEWDRKKLFDFDVTVMFQKMVASYGILKVTDISVKEECKARPPGL 294
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+ L K AS + + M +AE LY GFISYPRTE+ ++ S + + +P
Sbjct: 295 NTVNLLKVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNP 354
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
W + LLD + P GHD HPPI P + ++ E+ D ++LY+ + +HF
Sbjct: 355 LWSNDVRTLLDTG---FVKPKQ-GHDAGDHPPITPMRLATEEA-LGTDAWRLYQYICQHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
+ VS T +E GE F G + ++ + + + + IP Y G
Sbjct: 410 IGTVSPDCRYTRTSIEFTSGGETFHCVGNRVTSEGFTSIMPWLAVSENNIPAYKKGDAVS 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + G T PP LSE++L+S M+K GIGTDA++ H+ + +R Y ++ R P
Sbjct: 470 IHKVDIYEGSTTPPDYLSESELISLMEKNGIGTDASIPVHVNNICERNYVQVNSGRRLVP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T +G L+ GY + +L P++R +E + ++ G V+ + LQQ F+
Sbjct: 530 TPLGTTLIRGYQCIDADLCLPDIRRFIEQQITLIAKGEADHLQVVQHVLQQ----FMKKY 585
Query: 606 LKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
VK +E M FE ++S D +G ++ +CG C
Sbjct: 586 SYFVKKIENMDALFEAQFSPLAD---SGRLLSKCGKC 619
>gi|302765975|ref|XP_002966408.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
gi|300165828|gb|EFJ32435.1| hypothetical protein SELMODRAFT_168492 [Selaginella moellendorffii]
Length = 871
Score = 369 bits (946), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 227/623 (36%), Positives = 338/623 (54%), Gaps = 31/623 (4%)
Query: 39 RSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVP 98
R Y ++EF+ + RG H +TSV GH+ +DF +Y+ W DP DL+ AP K+
Sbjct: 14 RKSYLDVHEFDGTFRGFQAHYKVTSVIGHVYGIDFPPKYQNWELTDPLDLFGAPTLKNEA 73
Query: 99 EDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIE----VCRAVNCHLVLRRARFS 154
K + K L +EAR C LVLWLDCDREGENI FEV+E V + + V R ARFS
Sbjct: 74 NPKAHVCKHLRQEARGCDSLVLWLDCDREGENICFEVMENALPVMKKRSGQQVFR-ARFS 132
Query: 155 ALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLL--KNFHIDSVTDD 212
A+ ++++ A+ +LV+PNQ A AVDARQEIDL++G +FTRFQT K ++DS
Sbjct: 133 AVSEKDVKTAMSSLVEPNQNEALAVDARQEIDLKVGVAFTRFQTRFFQGKYGNLDSS--- 189
Query: 213 RNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYT 272
V+S+GPCQ PTLGF VER+ +I + FWT++ + W RG +F+
Sbjct: 190 ---VISFGPCQTPTLGFCVERHTQIITFVPKPFWTLHPRLSKGGHSLQLDWERGRVFEQA 246
Query: 273 SAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDL 332
+A++ + ++ + V V Q+E+ K P L+T+ + K AS M H M++AE L
Sbjct: 247 TALVPQKAVLKSGSLKVLDVSQKEERKARPTGLNTVNMLKVASTALGMGPHHAMQIAERL 306
Query: 333 YQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDD 392
Y G+ISYPRTE+ ++ + ++ + HP +G YA+ L+ AAG+ R P SG D
Sbjct: 307 YVQGYISYPRTESTAYPASFDVKESLLPLGNHPVFGDYARSLI--AAGV-RAPKSGT-DA 362
Query: 393 KAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTS 452
HPPI P + S ES D ++LY+ + RHFL VS T V + GEVF+ S
Sbjct: 363 GDHPPITPMR-SGTESELGGDAWRLYDYISRHFLGSVSPDCKYKRTKVTFSGGGEVFTCS 421
Query: 453 GRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD 512
G+V+ + + + + +P + G+ + + L G T PP L+E+DL+S M+
Sbjct: 422 GKVVTSPGFTIAMPWMAVTDENLPAFTIGESLPCSEVELYQGRTSPPDYLTESDLISLME 481
Query: 513 KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMM 572
K GIGTDA++ HI + R Y R PT +G L+ GY + +L P++RS +
Sbjct: 482 KHGIGTDASIPVHINNICQRNYVQVQTGRRLVPTALGITLIRGYQTIDADLCLPDIRSFI 541
Query: 573 ESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE-RWSGGEDQQAA 631
E + ++ G V+ N L + A F + +E M FE +S D +
Sbjct: 542 EQQITLIAKGQVDHETVVRNSLDKFVAKFKN-------FIEKMDALFEAHFSPLAD---S 591
Query: 632 GEVVRQCGICQE--SNMVLKKSR 652
G + +CG C+ + L+ SR
Sbjct: 592 GRPLSKCGKCKRYMKYITLRPSR 614
>gi|401425068|ref|XP_003877019.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493263|emb|CBZ28548.1| putative DNA topoisomerase III [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 866
Score = 369 bits (946), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 228/637 (35%), Positives = 333/637 (52%), Gaps = 26/637 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
NVL VAEKPS+A+S+A ILS R R+R +YE+ + G P + +TS TGH+
Sbjct: 4 NVLMVAEKPSLAESIATILSNGSCSR----RTRALPVYEYMGNFMGSPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W D L+ AP+ K + LE EA+ C LVLWLDCDREG
Sbjct: 60 FSCDFTSQHQNWDRTDEEQLFTAPITWKDTSGK--VTHHLEHEAQGCDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R + H + RA FSA+ EI A +NL PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRREIYNHNNIFRAHFSAITAEEIFHAFRNLGKPNKNVSDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTRFQT + + D V+SYGPCQ PTLGF V+R+ EI + E FW
Sbjct: 178 KVGVAFTRFQTKYFQGKYGDLDAS----VISYGPCQTPTLGFCVQRHDEILNFKPENFWR 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
+ F W RG LFD T A +I + + ATV V + P L+
Sbjct: 234 LVPVATRGGALLQFEWDRGRLFDETMARLILQRITKNGKVATVANVSVSNDTRPRPTGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L K ASR + + M +AE+LY G+ISYPRTE+ ++ NL G + +Q H
Sbjct: 294 TVDLMKIASRALGIGPHYVMSIAENLYIRGYISYPRTESTAYPPSFNLAGTLAQQKNHSM 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG Y LL + G D HPPI P + S+ S D ++++E + RHF+
Sbjct: 354 WGAYVTALLQQGHARPK----AGKDAGDHPPITPMR-SASPGELSGDEWRIFEYITRHFI 408
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFI 485
A VS +T + I + GE FS SG+V+ + ++ +PT ++ G F
Sbjct: 409 ASVSPDCRLIKTKITIELGGEFFSISGKVVEDPGFTEIMPHARVEDDRMPTGINKGDSFQ 468
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + L +G T+PP L+E+DL+ M+K GIGTDA++ H+ +++R Y A P
Sbjct: 469 LSDVRLQAGQTQPPSYLTESDLIGLMEKNGIGTDASISTHVNNIVERGYCSVQAGRVMKP 528
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+ +G L+ G + EL P +RS +E + ++ G DVL+ L +
Sbjct: 529 SKLGIVLIHGIKAIDPELVLPLVRSRVEEYVTHIAEGRAQLDDVLSYSL-DLFFSKFKFF 587
Query: 606 LKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ + + +A MG F S A G+ + +CG C
Sbjct: 588 KEHIDVFDALMGASFSAIS------ATGKPITRCGNC 618
>gi|224131522|ref|XP_002321105.1| predicted protein [Populus trichocarpa]
gi|222861878|gb|EEE99420.1| predicted protein [Populus trichocarpa]
Length = 837
Score = 369 bits (946), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 227/638 (35%), Positives = 341/638 (53%), Gaps = 25/638 (3%)
Query: 39 RSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVP 98
R +++EF G + +TSV GH+ +DF +Y+ W + DPADL+ AP+ K
Sbjct: 4 RKGTTEVHEFEGMFNGFRAYFKVTSVIGHVFSVDFPAKYQDWAATDPADLFQAPIHKAEA 63
Query: 99 EDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC--RAVNCHLVLRRARFSAL 156
K I + L +EAR C LVLWLDCDREGENI FEVI+ +A + + RARFS++
Sbjct: 64 NPKAHICRHLSQEARGCNHLVLWLDCDREGENICFEVIQCTGFQANDDRRKVYRARFSSV 123
Query: 157 IDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLV 216
+++I +A+ LV+PN++ A AVDARQEIDL++G +FTRFQT + + + D R V
Sbjct: 124 TEKDILKAMNCLVEPNEYEALAVDARQEIDLKVGVAFTRFQTSFFQGKYGN--LDSR--V 179
Query: 217 LSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVI 276
+SYGPCQ PTLGF V+RY +I + E+FW + + W R LFD A++
Sbjct: 180 ISYGPCQTPTLGFCVQRYLQITTFKPEKFWALRPHVMVDGYELQLEWERHKLFDLDVALM 239
Query: 277 IYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG 336
++ +Q+ VT + ++++ K P L+T+ L K AS + TM++AE LY G
Sbjct: 240 FQKLVLQDRILEVTDMSEKQESKGRPPGLNTVNLLKIASSALGFGPQVTMQLAERLYIQG 299
Query: 337 FISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHP 396
FISYPRTE+ ++ S + G + +P WG Y Q LL +G + P SG D HP
Sbjct: 300 FISYPRTESTAYPSSFDFKGTLGALANNPMWGDYVQGLL---SGGYHKPQSG-KDAGDHP 355
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
PI P + S+ E +D ++LY+ V +HFL VS T VE +I GE F G +
Sbjct: 356 PITPMR-SANEDMLGRDAWRLYQYVCQHFLGTVSPDCKYTRTKVEFSIGGEFFHCIGLHV 414
Query: 457 LAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
K + + + + +P + G + + + L G T PP LSE++L+S M+K GI
Sbjct: 415 TVKGFTSIMPWLAVSEKNLPQFAKGDKIEVSKVELFEGQTVPPDYLSESELISLMEKNGI 474
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDM 576
GTDA++ HI + +R Y A + PT +G L+ GY + +L P++R +E +
Sbjct: 475 GTDASISVHINNICERNYVQVQAGRKLVPTALGITLIRGYQCIDPDLCLPDIRGFIEQQI 534
Query: 577 KEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVV 635
V+ G + V+ + L+Q K + VK ++ M FE ++S D +G
Sbjct: 535 TLVAKGEADHSCVVQHVLEQFKRKY----SYFVKQIDNMDALFEAQFSPLAD---SGRAF 587
Query: 636 RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
+CG C M S+ L G C +LP
Sbjct: 588 SKCGKCLRY-MKYISSQPSRLYCG-----TCEEVYYLP 619
>gi|195164959|ref|XP_002023313.1| GL20281 [Drosophila persimilis]
gi|198468405|ref|XP_001354695.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
gi|194105418|gb|EDW27461.1| GL20281 [Drosophila persimilis]
gi|198146398|gb|EAL31750.2| GA17464 [Drosophila pseudoobscura pseudoobscura]
Length = 875
Score = 368 bits (945), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 226/640 (35%), Positives = 339/640 (52%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
NVL VAEKPS+A S+A ILS N ++ G +E+ + R + H MTSV GH
Sbjct: 3 NVLMVAEKPSLAASLATILS-NGRCTVKRGTGNGCSTHEWTGTFRNEGTVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF +Y W DP L+ P K K+ ++ L EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFISKYNSWDKVDPVQLFGCPTEKKETSPKQHMRTFLAHEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ + V ++ V RA FSA+ D++I A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVQGVISNVYSKQVTYRAHFSAITDKDIKGAMETLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 238 SFWYLQMLAGQPE--FTLEWGRGRVFKKDIAIMLLNRVKEHKEATVESVSSKEAFKSKPL 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G++SYPRTET+ + +L +++
Sbjct: 296 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYVSYPRTETNQYPENFDLPAVLRVLQP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ +L G + P G D HPPI P K ++ S + +D +++YE + R
Sbjct: 356 SGDFGDEARSIL----GDIQAP-RKGKDAGDHPPITPMKLAN-RSDFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ +S+ T ++ + E FS + V+L + Y V + ++G +P +V G
Sbjct: 410 HFMGTLSRDLKYRTTTAKLKVGMETFSCTANVLLDQGYTKVMTWLAFGRDEPMPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP L+EA+L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 QVAINDVRLAESQTGPPDYLTEAELITLMEQHGIGTDASIPVHINNICQRNYVRIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +RS +E + ++ G+ DVL + + K F
Sbjct: 530 LIPTTLGIVLVHGYTKIDPELVLPTMRSEVERMLTLIAKGSADFQDVLQHAITIFKLKF- 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ VK + +M FE +G+ +CG C+
Sbjct: 589 ---MYYVKNIASMDALFE--VSFSPLAESGKAHSRCGKCR 623
>gi|71756135|ref|XP_828982.1| DNA topoisomerase III [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834368|gb|EAN79870.1| DNA topoisomerase III, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|144583730|gb|ABP01567.1| topoisomerase IIIbeta [Trypanosoma brucei brucei]
gi|261334912|emb|CBH17906.1| DNA topoisomerase III, putative [Trypanosoma brucei gambiense
DAL972]
Length = 841
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 219/637 (34%), Positives = 340/637 (53%), Gaps = 27/637 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A LS + + SR ++E++ +G P H +TS TGH+
Sbjct: 4 TVLMVAEKPSIAESIAHHLSNGRTAK----HSRALPVFEYDGYFQGAPAHFRVTSTTGHI 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +Y+ W D L+ APV E+ + + LE EA+ C LVLWLDCDREG
Sbjct: 60 FSCDFTPQYQSWDRTDEESLFGAPVVWR--EESGRVSRHLEHEAKGCATLVLWLDCDREG 117
Query: 129 ENIAFEVIEVC-RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R+++ + RA+FSA+ I +A NL PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVSRSIHDIRCIWRAKFSAITREAITEAFVNLGKPNKNLSDAVSCRQELDL 177
Query: 188 RIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
++G FTR+QT K ++D+ V+SYGPCQ PTL F V+R+ EI + E +
Sbjct: 178 KVGVVFTRYQTKYFQGKYGNLDAS------VVSYGPCQTPTLAFCVQRHDEILNFKPENY 231
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W + + TF W RG +FD A ++++ + A V V + P L
Sbjct: 232 WKLVPTCNRYGSPITFEWARGRVFDELIARLLHQRVSRSKVAKVVDVSVGADTRARPTAL 291
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL K AS++ + H M++AE+LY +G+ISYPRTE+ ++ +L + Q GHP
Sbjct: 292 NTVELMKIASKFLGIGPHHAMQIAENLYISGYISYPRTESTAYPVSFDLKAALATQQGHP 351
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG Y Q LL G + P G D HPPI P + ++ S D ++LYE + RHF
Sbjct: 352 VWGEYVQELLK---GRYTRP-KAGKDAGDHPPITPMRAATA-GELSSDSWRLYEYITRHF 406
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQF 484
+A VS + T + + ++GE+F+ +G+V++ + + + +PT + G F
Sbjct: 407 IATVSPDCKLSRTKLVLELSGELFTFTGKVVVDPGFTTILAHLAVKDDKVPTNIEVGSDF 466
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ L +G T+ P L+EADL+ M+K GIGTDA++ H+ +++R Y
Sbjct: 467 PINDVRLQAGQTQAPGYLTEADLIGLMEKNGIGTDASISQHVNNIVERGYCAVKPGRVME 526
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PT +G L+ G + EL P +RS +E + ++ G +VL++ L F
Sbjct: 527 PTKLGVVLIHGIKSIDPELVLPLVRSKVEEYVTCIAEGQARLDEVLSSVLDLFFGKFRYF 586
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ + MG F + ++G+ + +CG C
Sbjct: 587 KENIERFDALMGASFSPLT------SSGKPITRCGNC 617
>gi|391327272|ref|XP_003738127.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Metaseiulus
occidentalis]
Length = 851
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 239/677 (35%), Positives = 357/677 (52%), Gaps = 36/677 (5%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
R +V VAEKPS+A+S+A ILS N + R+ + ++E+N + + MTSV
Sbjct: 2 SRTFSVFMVAEKPSLAQSLANILS-NDNCKSRKAMNGACSVHEWNGNFQKSSARFKMTSV 60
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GH+M DF +Y W DPA+L+ AP+ K K + K L EA +VLWLDC
Sbjct: 61 CGHVMTADFTGKYNNWDRVDPAELFLAPIEKKEAIPKLHMPKMLSIEAEGSDAVVLWLDC 120
Query: 125 DREGENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
D+EGENI FEVI R ++ + + RA+FS++ +++I A+ LV PN+ A +VDARQ
Sbjct: 121 DKEGENICFEVINAIRHSIKKNAQILRAKFSSITEKDIKAAMNCLVSPNENEALSVDARQ 180
Query: 184 EIDLRIGASFTRFQTMLLKNFH--IDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
+DLRIG +FTRFQT +N + +DS ++S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 181 ALDLRIGCAFTRFQTKYFQNKYGNLDSS------LISFGPCQTPTLGFCVERHDKIQSFK 234
Query: 242 SEEFWTINCSHK-SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
E +W +N K T W +G +FD A + M A V ++ +E K
Sbjct: 235 PENYWVLNAQIKLPNNNIVTPEWDKGSIFDQEVASVCLAMAKGANHARVLSIQDKEMSKS 294
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P L+T+EL + AS M +H M++AE LY GFISYPRTET S+S +L G VQ
Sbjct: 295 RPLALNTVELMRAASAGLGMGPQHAMQIAEKLYTQGFISYPRTETTSYSENMDLRGTVQM 354
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
P+ +A +LL A GL G+ D HPPI PTK +S ++ D ++LYE
Sbjct: 355 LKNIPEASNFANKLL--ANGLKPKKGTDVGD---HPPITPTKAAS-RAQLDGDSWRLYEY 408
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV--YRFESWGGLVIPTY 478
+V HFL + + V + I E F+ + R + + + +R S +
Sbjct: 409 IVAHFLGSLGGDLKYRQMQVALLIGNEPFTLTTRKTIDPGFTAIMTWRAVSSNSESLNLT 468
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
V G Q ++ LD T PP L+E++L++ MDK GIGTDA++ HI + R Y +
Sbjct: 469 V-GTQLEVVSMKLDERQTSPPDYLTESELIALMDKHGIGTDASIPVHINNICQRNYVTVE 527
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ--Q 596
R PTN+G L+ GY + +L P +R+ +E + ++ GN + VL + L Q
Sbjct: 528 NGRRLKPTNLGIVLIHGYQAIDKDLCLPWMRAAVEKQLNLIATGNANYDAVLKHTLTVFQ 587
Query: 597 MKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNL 656
+K + A + + G+F +S D +G+ + +CG C+ M + S+ L
Sbjct: 588 LKFHYFVATVAAMD-----GLFECTFSSLSD---SGKPMSRCGKCRRY-MKIVNSKPTRL 638
Query: 657 MVGCLAFPQCRNAVWLP 673
P C + LP
Sbjct: 639 HC-----PNCDETLSLP 650
>gi|302830151|ref|XP_002946642.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
gi|300268388|gb|EFJ52569.1| hypothetical protein VOLCADRAFT_79203 [Volvox carteri f.
nagariensis]
Length = 896
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 222/573 (38%), Positives = 307/573 (53%), Gaps = 27/573 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
++V VAEKPS+A+S+A ILS R+ R+ + ++EF RGQP MTSV GH
Sbjct: 3 LSVFMVAEKPSLAQSIAQILSDG---RLSSRRAALD-VHEFEGRFRGQPARFKMTSVIGH 58
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +DF + W DPA LY AP K K + + L+ E R C LVLWLDCDRE
Sbjct: 59 VYSIDFTAAFNSWDKVDPAQLYDAPTVKLEANPKAHVCEHLQREGRGCDVLVLWLDCDRE 118
Query: 128 GENIAFEV------IEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
GENI FEV E + + RARFSA+ EI A+ NLV PN+ A AVDA
Sbjct: 119 GENICFEVGGWGVRREGKDEPSERQSVLRARFSAITAPEIRAAMSNLVLPNEAEALAVDA 178
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDR--NL---VLSYGPCQFPTLGFVVERYWE 236
RQE+DLR+G SFTRFQT + D R NL V+SYGPCQ PTL F VER+
Sbjct: 179 RQELDLRVGVSFTRFQTRFFQ------ARDGRYGNLDASVISYGPCQTPTLNFCVERHQA 232
Query: 237 IQAHESEEFWTINCSHKSEEGTAT-FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQ 295
I + + E FW++ S+ GT W +G +FD + + + V V ++
Sbjct: 233 IVSFQPEPFWSVR-PRASKAGTPLELEWDKGRVFDQDVGALFASLVREAKRLRVVDVVEK 291
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLH 355
E K P+ L+T+EL K AS M H M++AE LY AG++SYPRTE+ ++ ++
Sbjct: 292 EDRKQRPHGLNTVELLKVASASLGMGPAHAMQIAERLYTAGYLSYPRTESSAYPPNFDIT 351
Query: 356 GIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY 415
G V HP +G YA LL ++P GG D HPPI P + ++ + D +
Sbjct: 352 GTVAALRNHPVFGGYASALLQQGV---KHP-QGGTDVGDHPPITPVRAATEDDLGGGDAW 407
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
++Y+ V RHFL VS AV +T GE FS SG V++ + + + + + +
Sbjct: 408 RVYDFVTRHFLGSVSPDAVYRKTKATFEGDGETFSASGSVVVRQGFTAIMPWRATQSEPL 467
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P G+ + L L G T PP L+E+DL+ M+K GIGTDA++ HI + +R Y
Sbjct: 468 PPLTPGEYLPLSDLELYQGRTSPPDYLTESDLIGLMEKHGIGTDASIPVHINNICERNYV 527
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNL 568
+ R PT +G L+ GY + EL KP +
Sbjct: 528 TIQSGRRVVPTELGITLIRGYQLIDPELCKPQV 560
>gi|365759377|gb|EHN01167.1| Top3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 601
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 220/577 (38%), Positives = 314/577 (54%), Gaps = 39/577 (6%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV GHL +DF W C +L+ AP+ + + ++K I ++ EA+ +L++
Sbjct: 1 MTSVAGHLTGIDFSHDSHGWGKCAIQELFDAPLDEIMNNNQKKIASNIKREAKNADYLMI 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLV---LRRARFSALIDREIHQAVQNLVDPNQWFAD 177
W DCDREGE I +EV + + N + + RA FS L + I A +N +
Sbjct: 61 WTDCDREGEYIGWEVWQEAKRGNRRIQDDQVYRAVFSHLERQHILHAARNPSRLDMKSVQ 120
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDR-----------NLVLSYGPCQFP 225
AV R EIDLR G +FTR T L++ + T + + V+SYG CQFP
Sbjct: 121 AVGTRIEIDLRAGVTFTRLLTETLRSKLRTQNATANGGGKNRGGGKNDSQVVSYGTCQFP 180
Query: 226 TLGFVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ 283
TLGFVV+R+ I+ EEFW I +K GT TF W RGHLFD S + YE C++
Sbjct: 181 TLGFVVDRFERIRNFVPEEFWYIQLVVDNKDSGGTTTFQWDRGHLFDRQSVLTFYETCIE 240
Query: 284 EP--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
A V ++ + KY P PL+T+EL+K SRY R++++ ++ AE LYQ GFISYP
Sbjct: 241 TAGGVAKVVDLKSKPTSKYRPLPLTTVELQKNCSRYLRLNAKQSLDAAEKLYQKGFISYP 300
Query: 342 RTETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLL--DHAAGLWRN----PGS 387
RTETD+F +L +V++Q G W YA LL + A+G N P
Sbjct: 301 RTETDTFPQAMHLKSLVEKQAQLDQPGAGGKTAWASYAASLLLPESASGNNTNRFQLPRG 360
Query: 388 GGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGE 447
G HDDKAHPPIHP ++ S ++YE V RHFLAC S+ A G T + ++ AGE
Sbjct: 361 GSHDDKAHPPIHPIVSLGPDANVSPVERRVYEYVARHFLACCSEDAKGQSTTLVLDWAGE 420
Query: 448 VFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEAD 506
FS+SG V+L +N+LDVY + W +P + G T PP ++E++
Sbjct: 421 RFSSSGLVVLQRNFLDVYPWARWETTKQLPRLDMDALVDIAKAEMKVGTTAPPKPMTESE 480
Query: 507 LLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE- 562
L+ MD GIGTDAT+ +HI K+ R Y + T PT +G +LV G++ +G E
Sbjct: 481 LIILMDANGIGTDATIAEHIDKIQVRNYVRSEKAGKETYLLPTTLGVSLVHGFEAIGLED 540
Query: 563 -LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
KP R ME D+K++ G+ SKADV+ + +++ +
Sbjct: 541 SFAKPFQRREMEEDLKKICDGHASKADVVKDIVEKYR 577
>gi|195399043|ref|XP_002058130.1| GJ15664 [Drosophila virilis]
gi|194150554|gb|EDW66238.1| GJ15664 [Drosophila virilis]
Length = 858
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 224/639 (35%), Positives = 337/639 (52%), Gaps = 24/639 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
NVL VAEKPS+A S+AGILS + R + ++ G H MTSV GH+
Sbjct: 3 NVLMVAEKPSLAASLAGILSNGRCTAKRGNNGCSTHEWTGHFRNEGS-VHFRMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF +Y W DP +L+ K K+ ++ L EAR C +LVLWLDCD+EG
Sbjct: 62 MSLDFTSKYTSWDKVDPVELFGCTTEKKECNPKQQMRSFLAHEARGCDYLVLWLDCDKEG 121
Query: 129 ENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
ENI FEV++ V V V RA FSA+ D++I A++ L PN+ A +VDARQE
Sbjct: 122 ENICFEVMDAVQHVIHNVYSRNVTYRAHFSAITDKDIKGAMETLGHPNENEAKSVDARQE 181
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 LDLRIGCAFTRFQTKFFQGRYGDL---DSSLI-SYGPCQTPTLGFCVKRHDDIQTFKPET 237
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 238 FWYLQLMAGQPE--YTLEWARGRVFKKDIAIMLLNRVKEHKEATVESVSSKESFKSKPQA 295
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL + S + M++AE LY G+ISYPRTET+ + +LH +++
Sbjct: 296 LNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPENFDLHAVLRVLQPS 355
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
D+G A+ + AG ++ P G D HPPI P K + +D +++YE + RH
Sbjct: 356 GDFGDEARAI----AGDFQTP-RKGKDAGDHPPITPMKLGH-RGDFDRDTWRVYEFICRH 409
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQQ 483
F+ +S+ T ++ + E F+ + V+L + V ++++G +P +V G Q
Sbjct: 410 FMGTISRDLKYRTTTAKLRVGLECFTCTANVLLDAGFTKVMTWQAFGKDEAMPPFVQGSQ 469
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ L T PP L+EA+L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 VAINDVRLAESQTGPPDYLTEAELITLMEQHGIGTDASIPVHINNICQRNYVRIETGRKL 529
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT +G LV GY + EL P +RS +E + ++ G+ DVL + ++ K F+
Sbjct: 530 IPTTLGIVLVHGYQKIDPELVLPTMRSEVERMLTLIAKGSADFNDVLRHAIKIFKLKFMF 589
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ + +M + FE S +G+ +CG C+
Sbjct: 590 F----VQNIASMDMLFE--SSFSPLAESGKAHSRCGKCR 622
>gi|294948596|ref|XP_002785799.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239899907|gb|EER17595.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 850
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 233/645 (36%), Positives = 350/645 (54%), Gaps = 25/645 (3%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+++A L K + R G S +++EFN +G P + +TSV GH+
Sbjct: 5 VLMVAEKPSIAEALAKSLCKGK-YNSRRGVSPVGQVHEFNGEFQGSPAWLKITSVAGHVY 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF W DPA L+ + + K+ + + L E++ C LVLWLDCDREGE
Sbjct: 64 SIDFPPELNNWDRVDPAKLFESKTVQKEANPKQRMPQHLRSESKGCDHLVLWLDCDREGE 123
Query: 130 NIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
NI +EV++ V ++ + RA+FS+L+ +++ A +NL PNQ A +VDARQEIDL+
Sbjct: 124 NICYEVMQNVAPNLSDRKNVWRAKFSSLVAKDLQHAYRNLGYPNQNEALSVDARQEIDLK 183
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
G +FTRFQT + + D D +LV SYGPCQ PTL F V R+ +IQ + E ++TI
Sbjct: 184 TGVAFTRFQTRYFQGKYGDL---DSSLV-SYGPCQTPTLWFCVRRHNDIQTFQPETYYTI 239
Query: 249 NCSHKSEEGTAT--FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + + + W RG LFD +A M ATVT V ++E+ + P ++
Sbjct: 240 DVKLEGSQLASPLWLEWSRGQLFDLQAATTFKSMIDAYQWATVTDVSEKEERRSRPGAMN 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+ + K AS+ M + M+VAE LY +G+I+YPRTET + +L V Q +P
Sbjct: 300 TVLMLKLASQQLGMGPQQAMQVAERLYLSGYITYPRTETTKYPPAFDLREAVSFQSRNPY 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +A LL GL N G+D HPPI P + ++ S D ++L++++ RHFL
Sbjct: 360 WGEFATELL--TTGL--NRPKEGYDAGDHPPITPVRSATEGDFGSSDSWRLFDMLTRHFL 415
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A + T V + GE STS A +Y +R + +V+P G++
Sbjct: 416 ASLGHDCKFTRTKVHF-VIGEEVSTSSNSHRAGHY---WRLVT--RMVLPQLKIGEKLQI 469
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ ++ S T+PPP LSE+DLL M+K GIGTDA+M HI + +R Y R PT
Sbjct: 470 ASKSISSAKTKPPPYLSESDLLGLMEKNGIGTDASMATHINNICERNYVSLTDGRRLVPT 529
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LV GY + EL P +R+ +ES+ ++ G K +V A+ L + F +
Sbjct: 530 KLGITLVHGYQAIDNELVIPRVRANIESECTLIANGKARKDEVTAHALTIFQQKF----M 585
Query: 607 KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE-SNMVLKK 650
V ++ M FE S A G+++ +CG C+ N++ KK
Sbjct: 586 YFVSHVDLMDHLFE--STFTSLAATGKLMSRCGKCRTYMNLIDKK 628
>gi|194762590|ref|XP_001963417.1| GF20299 [Drosophila ananassae]
gi|190629076|gb|EDV44493.1| GF20299 [Drosophila ananassae]
Length = 878
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 226/640 (35%), Positives = 337/640 (52%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
NVL VAEKPS+A S+A ILS N + G +E+ + R + H MTSV GH
Sbjct: 3 NVLMVAEKPSLAASLAAILS-NGRCTAKRGTGNGCSTHEWTGTFRNEGSVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF +Y W DP +L+ P K K+ ++ L EA+ C +LVLWLDCD+E
Sbjct: 62 VMSLDFISKYNSWDKVDPVELFSCPTEKKETNPKQHMRTFLAHEAKGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ V V V RA FSA+ +++I A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVQNVIHNVYSRQVTYRAHFSAITEKDIKGAMETLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+ + ++ ATV V +E K P
Sbjct: 238 SFWYLQLLAGQPE--FTLEWARGRVFKKDIAITLLNRVKEQKEATVESVSSKEAFKSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G+ISYPRTET+ + + +L +++
Sbjct: 296 ALNTVELMRICSSGLSIGPFQAMQIAERLYTQGYISYPRTETNQYPANFDLPAVLRVLQP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
++G A+ +L G + P G D HPPI P K S S + +D +++YE + R
Sbjct: 356 SGEFGDEARSIL----GDLQTP-RKGKDAGDHPPITPMKLGS-RSDFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ VS+ T ++ + E FS + V+L + V ++++G +P +V G
Sbjct: 410 HFMGTVSRDLKYRTTTAKLRVGLETFSCTANVLLDAGFTKVMTWQAFGRDEPMPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP L+EA+L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 QVAINDVRLAESQTGPPDYLTEAELITLMEQHGIGTDASIPVHINNICQRNYVRIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +RS +E + ++ G+ DVL + ++ K F
Sbjct: 530 LIPTTLGIVLVHGYQKIDPELVLPTMRSEVERMLTLIAQGSADFQDVLRHAIKIFKLKF- 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ VK + M FE +G+ +CG C+
Sbjct: 589 ---MYFVKNIANMDALFE--VSFSPLAESGKAHSRCGKCR 623
>gi|195133228|ref|XP_002011041.1| GI16324 [Drosophila mojavensis]
gi|193907016|gb|EDW05883.1| GI16324 [Drosophila mojavensis]
Length = 858
Score = 365 bits (937), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 224/640 (35%), Positives = 340/640 (53%), Gaps = 26/640 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
+VL VAEKPS+A S+AGILS + R +E+ R + H MTSV GH
Sbjct: 3 SVLMVAEKPSLAASLAGILSNGRCTAKRGNNG--CSTHEWTGPFRNEGNVHFRMTSVCGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF +Y W DP L+ P K K+ ++ L EAR C +LVLWLDCD+E
Sbjct: 61 VMSLDFISKYTSWDKVDPVQLFDCPTEKKECNPKQQMRSFLAHEARGCDYLVLWLDCDKE 120
Query: 128 GENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ V V V RA FSA+ D++I A+++L PN+ A +VDARQ
Sbjct: 121 GENICFEVMDAVQHVIHNVYSTFVTYRAHFSAITDKDIKGAMESLGHPNKNEAKSVDARQ 180
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 181 ELDLRIGCAFTRFQTKFFQGRYGDL---DSSLI-SYGPCQTPTLGFCVKRHDDIQLFKPE 236
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 237 TFWYLQLVAGQPE--VTLEWARGRVFKKNIAIMLLNRVKEHKEATVESVSSKESFKSKPQ 294
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G+ISYPRTET+ + +LH +++
Sbjct: 295 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPENFDLHAVLRLLQP 354
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ + + ++ P G D HPPI P K + + +D +++YE + R
Sbjct: 355 SGDFGDEARAI----SSDFQTP-RKGKDAGDHPPITPMKLGH-RNDFDRDTWRVYEFICR 408
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ +S+ T ++ + E F+ + V+L + V ++++G +P +V G
Sbjct: 409 HFMGTISRDLKYRTTTAKLKVGLETFTCTANVLLDAGFTKVMTWQAFGKDEAMPPFVQGT 468
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q T + L T PP L+EA+L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 469 QVPITDVRLAESQTGPPDYLTEAELITLMEQHGIGTDASIPVHINNICQRNYVKIETGRK 528
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +RS +E + ++ G+ DVL + ++ K F+
Sbjct: 529 LIPTTLGIVLVHGYQKIDPELVLPTMRSEVERMLTLIAKGSADFNDVLRHAIKIFKLKFV 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ + +M + FE S +G+ +CG C+
Sbjct: 589 YF----VQNIASMDMLFE--SSFSPLAESGKAHSRCGKCR 622
>gi|389601917|ref|XP_001566225.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505240|emb|CAM39725.2| putative DNA topoisomerase III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 866
Score = 365 bits (937), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 228/637 (35%), Positives = 337/637 (52%), Gaps = 26/637 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
NVL VAEKPS+A+S+A ILS R R+R +YE+ S G P + +TS TGH+
Sbjct: 4 NVLMVAEKPSLAESIATILSSGSCSR----RTRALPVYEYMGSFMGSPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W + L+ AP+ +K + LE EA+ C LVLWLDCDREG
Sbjct: 60 FSCDFTSQHQNWDRTEEEQLFTAPIVWKDTSEK--VTHHLEHEAKGCDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R + + + RA FSA+ EI A +L PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRREIYNNNSIFRAHFSAITAEEIFHAFCSLGRPNKSISDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTRFQT + + D V+SYGPCQ PTLGF V+R+ EI + E FW
Sbjct: 178 KVGVAFTRFQTKYFQGKYGDLDAS----VVSYGPCQTPTLGFCVQRHDEILNFKPENFWR 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE-PTATVTKVRQQEKLKYPPYPLS 306
+ F W RG +FD T A +I + + ATVT + + P L+
Sbjct: 234 LVPVASRSGAVLQFDWDRGRVFDETMARLILQRITKNGKVATVTNMSVSSDTRPRPTGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L K AS+ + + M +AE+LY G+ISYPRTE+ ++ NL G + +Q HP
Sbjct: 294 TVDLMKIASKALGIGPHYVMTIAENLYIRGYISYPRTESTAYPPSFNLVGALAQQKNHPI 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG Y LL G +P G D HPPI P + S+ S D ++++E + RHF+
Sbjct: 354 WGGYVTALLQ---GGHVHP-KAGKDAGDHPPITPMR-SASPGELSGDEWRIFEYITRHFI 408
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFI 485
A VS +T + I + GE+FS SG+V+ + ++ +PT V+ G F
Sbjct: 409 ASVSPDCRLIKTKITIELGGELFSISGKVVEDPGFTEIMPHARVEDDRMPTGVNKGDSFQ 468
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + L +G T+PP L+E+DL+ M+K GIGTDA++ HI +++R Y A P
Sbjct: 469 LSDVRLQAGQTQPPSYLTESDLIGLMEKNGIGTDASISTHINNIVERGYCSVQAGRVMKP 528
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+ +G L+ G + EL P +RS +E + ++ G DVL+ L +
Sbjct: 529 SKLGIVLIHGIKAIDPELVLPLVRSRVEEYVTHIAEGRARLEDVLSYSL-DLFFSKFKFF 587
Query: 606 LKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ + + + MG F S A G+ + +CG C
Sbjct: 588 KEHIDIFDGLMGASFSAIS------ATGKPITRCGNC 618
>gi|328697671|ref|XP_003240406.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Acyrthosiphon
pisum]
Length = 853
Score = 365 bits (937), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 227/644 (35%), Positives = 345/644 (53%), Gaps = 34/644 (5%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS + R+ + ++E++ ++ G+P MTSV GH+M
Sbjct: 5 LMVAEKPSLASSLASILSNGRS-NSRKSMNSACPVHEWSGTLFGEPVIFKMTSVCGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF+ ++ W DP +L+ P K K I L EAR +L+LWLDCD+EGEN
Sbjct: 64 LDFNSKFNNWDKVDPEELFSCPTEKKEASPKLRIPAMLASEARGVDFLILWLDCDKEGEN 123
Query: 131 IAFEVIEVCRA-------VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
I FEVI+ ++ VN + RA+FSA+ ++I A++ L PN+ A +VDARQ
Sbjct: 124 ICFEVIDAVKSSMKRSGDVN---RIWRAKFSAITAKDIKGAMERLDFPNRNEAMSVDARQ 180
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG SFTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EI+ + E
Sbjct: 181 ELDLRIGCSFTRFQTKYFQGKYGDL---DSSLI-SYGPCQTPTLGFCVQRHDEIRRFKPE 236
Query: 244 EFWTINCSHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W I + +S++G +W +G F+ ++ + + ++ ATV + QQEK K P
Sbjct: 237 PYWVIQVTIQSKDGQDVVLNWEKGRCFERDASNSLLQALKKQQIATVVSITQQEKSKQRP 296
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+++EL + AS M H M++AE LY G+ISYPRTET +S L ++
Sbjct: 297 LALNSVELMRAASTGLGMGPHHAMQLAERLYIQGYISYPRTETSHYSDNFELLPAMRTLQ 356
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+WG +++L++ RN G D HPPI PT +S + D +KLY+ +V
Sbjct: 357 KSNEWGQEIRQVLNNGLTRPRN----GKDCGDHPPITPTMLAS-RNDLDGDSWKLYDFIV 411
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTY 478
RHF+A +S+ V I E+F+ + R ++ + + W L + +
Sbjct: 412 RHFIATISKDCRYYSKTVTFKIGSEMFTYNWRTLIDAGFTAI---TPWKALPKNELAVNF 468
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
++ L +T PP L+E++L+S M+K GIGTDA++ HI + R Y
Sbjct: 469 ERDEKLNIKDARLTDHMTSPPGYLTESELISMMEKHGIGTDASIPVHINNISQRNYVTVA 528
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
R PTN+G LV GY + +L +P +RS +E + ++ G + V L+Q
Sbjct: 529 TGRRLVPTNLGIVLVHGYQKIDKQLVEPTMRSTIEDQLNLIAKGEANYDRV----LRQTI 584
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F L VK +EAM FE A+G+ + +CG C+
Sbjct: 585 EAFRQKYLYFVKSIEAMDSLFE--VSFTTLAASGKALSRCGKCR 626
>gi|378755338|gb|EHY65365.1| hypothetical protein NERG_01811 [Nematocida sp. 1 ERTm2]
Length = 772
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 218/597 (36%), Positives = 328/597 (54%), Gaps = 25/597 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LNVAEKPSVAKS+A ILS R +G ++Y ++ F+ + G C M+ TSV GH
Sbjct: 1 MRILNVAEKPSVAKSLADILS-GGAARPTKGLNKYCSVFRFDGEVEGARCQMVFTSVLGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L L+F ER W DP++L+ ++ +P + + KT+++ + C L++W DCDRE
Sbjct: 60 LYSLEF-ERKTSWTEIDPSELFEDKLKWSIPSTMEGVFKTIKQLSTECDMLIIWTDCDRE 118
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI +V V + + ++RARFS L ++ A++NL N + AV++R EIDL
Sbjct: 119 GENIGMQVANVVK--DRIQRVKRARFSGLSRYDVMHAMENLGALNINESKAVESRIEIDL 176
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+ TR QT+ L+N I++ + V+SYG CQ PTLGF+ R I+ E+ WT
Sbjct: 177 RIGAALTRLQTLQLQNI-IEAKS-----VISYGSCQIPTLGFICAREESIENFVEEKNWT 230
Query: 248 I--NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
I + H E+G F W RG ++D V I V V+K+ +++ K P+PL
Sbjct: 231 IQADVQHNGEKGV--FKWERGLVYD-EEYVNIKLGAVSGADLIVSKIETKKRYKSRPWPL 287
Query: 306 STIELEKRASRYFRMSSEHT-MKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
T+EL+K +R +++ H M +AE LY +G+ISYPRTETD+F S N + G
Sbjct: 288 RTVELQKFFARGKSVANSHELMNIAESLYTSGYISYPRTETDAFPSNFNSKDPMAALKGD 347
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
G YA+ L G+ P G H+D+AH PI+P K S + +YE + R
Sbjct: 348 SVLGEYAKNL---KPGV---PSKGNHNDQAHTPIYPLKSGSA---LNGKERSVYEYIARR 398
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
FLAC S A G E ++E GE F + KNYL+V+ +E WG + Q
Sbjct: 399 FLACYSANAEGEEELIECQANGETFIRKTLKVTKKNYLEVFIYEKWGDTEGDLGLKKGQK 458
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+P T + T P L+EA+L++ MD GIGTDAT+HDHI+++ +R Y
Sbjct: 459 VPWTPSKKDSHTEKPHFLTEAELIAKMDGNGIGTDATIHDHIERIKERKYVEVVNKNSIK 518
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T +G +L+ GY +G + +P LR E ++K+V G S ++ + + + +
Sbjct: 519 STWLGRSLIKGYKSIGLTISEPQLRKEFECNLKKVCSGELSAKSLIDQEITKYREIY 575
>gi|24640096|ref|NP_511059.2| topoisomerase 3beta [Drosophila melanogaster]
gi|14286175|sp|O96651.2|TOP3B_DROME RecName: Full=DNA topoisomerase 3-beta; AltName: Full=DNA
topoisomerase III beta
gi|7290697|gb|AAF46144.1| topoisomerase 3beta [Drosophila melanogaster]
gi|54650844|gb|AAV37001.1| LD10035p [Drosophila melanogaster]
gi|220950396|gb|ACL87741.1| Top3beta-PA [synthetic construct]
Length = 875
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 223/640 (34%), Positives = 344/640 (53%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
+VL VAEKPS+A S+AGILS N + G +E+ + R + H MTSV GH
Sbjct: 3 SVLMVAEKPSLAASLAGILS-NGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF+++Y W DP L+ K K++++K L EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ + V ++ V RA FSA+ +++I +A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVKHVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 238 SFWHLQLLAGQPE--VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G+ISYPRTET+ + + +L ++
Sbjct: 296 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVLHVLKP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ +L G + P G D HPPI P K + S + +D +++YE + R
Sbjct: 356 SADFGEEARSIL----GDIQTP-RKGKDAGDHPPITPMKLGN-RSDFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ VS+ T ++++ E FS + V++ + V + ++G P +V G
Sbjct: 410 HFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKVMTWSAFGKDEPQPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP L+E++L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 QVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNICQRNYVHIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +R+ +E + ++ G+ + DVL + ++ K F
Sbjct: 530 LMPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKF- 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ VK +++M FE +G+ +CG C+
Sbjct: 589 ---MYFVKNIDSMDALFE--VSFSPLAESGKAHSRCGKCR 623
>gi|4235475|gb|AAD13219.1| topoisomerase III [Drosophila melanogaster]
Length = 875
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 223/640 (34%), Positives = 344/640 (53%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
+VL VAEKPS+A S+AGILS N + G +E+ + R + H MTSV GH
Sbjct: 3 SVLMVAEKPSLAASLAGILS-NGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF+++Y W DP L+ K K++++K L EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ + V ++ V RA FSA+ +++I +A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVKHVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 238 SFWHLQLLAGQPE--VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G+ISYPRTET+ + + +L ++
Sbjct: 296 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVLHVLKP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ +L G + P G D HPPI P K + S + +D +++YE + R
Sbjct: 356 SADFGEEARSIL----GDIQTP-RKGKDAGDHPPITPMKLGN-RSDFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ VS+ T ++++ E FS + V++ + V + ++G P +V G
Sbjct: 410 HFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKVMTWSAFGKDEPQPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP L+E++L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 QVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNICQRNYVHIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +R+ +E + ++ G+ + DVL + ++ K F
Sbjct: 530 LMPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKF- 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ VK +++M FE +G+ +CG C+
Sbjct: 589 ---MYFVKNIDSMDALFE--VSFSPLAESGKAHSRCGKCR 623
>gi|302792781|ref|XP_002978156.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
gi|300154177|gb|EFJ20813.1| hypothetical protein SELMODRAFT_233065 [Selaginella moellendorffii]
Length = 877
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 235/661 (35%), Positives = 352/661 (53%), Gaps = 44/661 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A +A LS + R Y ++EF+ + RG H +TSV GH+
Sbjct: 5 VLMVAEKPSIAGMLASFLSSGR----MSTRKSYLDVHEFDGTFRGFQAHYKVTSVIGHVY 60
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDK-----KDIKKTLEEEARRCQWLVLWLDC 124
+DF +Y+ W DP DL+ AP K+ K ++ T++E AR C LVLWLDC
Sbjct: 61 GIDFPPKYQNWELTDPLDLFGAPTLKNEANPKVTSLGNELILTVQE-ARGCDSLVLWLDC 119
Query: 125 DREGENIAFE------VIEVCRAV--NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
DREGENI FE + + R + + RARFSA+ ++++ A+ +LV+PNQ A
Sbjct: 120 DREGENICFEGSYYWFSLFLSRDIFKRSGQQVFRARFSAVSEKDVKTAMSSLVEPNQNEA 179
Query: 177 DAVDARQEIDLRIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
AVDARQEIDL++G +FTRFQT K ++DS V+S+GPCQ PTLGF VER+
Sbjct: 180 LAVDARQEIDLKVGVAFTRFQTRFFQGKYGNLDSS------VISFGPCQTPTLGFCVERH 233
Query: 235 WEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
+I + FWT++ + W RG +F+ +A++ + ++ + V V Q
Sbjct: 234 TQIITFVPKPFWTLHPRLSKGGHSLQLDWERGRVFEQATALVPQKAVLKSGSLKVLDVSQ 293
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
+E+ K P L+T+ + K AS M H M++AE LY G+ISYPRTE+ ++ + ++
Sbjct: 294 KEERKARPTGLNTVNMLKVASTALGMGPHHAMQIAERLYVQGYISYPRTESTAYPASFDV 353
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
+ HP +G YA+ L+ AAG+ R P SG D HPPI P + S ES D
Sbjct: 354 KESLLPLGNHPVFGDYARSLI--AAGV-RAPKSGT-DAGDHPPITPMR-SGTESELGGDA 408
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
++LY+ + RHFL VS T V + GEVF+ SG+V+ + + + +
Sbjct: 409 WRLYDYISRHFLGSVSPDCKYKRTKVTFSGGGEVFTCSGKVVTSPGFTIAMPWMAVTDEN 468
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
+P + G+ + + L G T PP L+E+DL+S M+K GIGTDA++ HI + R Y
Sbjct: 469 LPAFTIGESLPCSEVELYQGRTSPPDYLTESDLISLMEKHGIGTDASIPVHINNICQRNY 528
Query: 535 AIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
R PT +G L+ GY + +L P++RS +E + ++ G V+ N L
Sbjct: 529 VQVQTGRRLVPTALGITLIRGYQTIDADLCLPDIRSFIEQQITLIAKGQVDHETVVRNSL 588
Query: 595 QQMKACFLDARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGICQE--SNMVLKKS 651
+ A F + +E M FE +S D +G + +CG C+ + L+ S
Sbjct: 589 DKFVAKFKN-------FIEKMDALFEAHFSPLAD---SGRPLSKCGKCKRYMKYITLRPS 638
Query: 652 R 652
R
Sbjct: 639 R 639
>gi|256052775|ref|XP_002569927.1| prokaryotic DNA topoisomerase [Schistosoma mansoni]
gi|360043203|emb|CCD78615.1| putative prokaryotic DNA topoisomerase [Schistosoma mansoni]
Length = 1159
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 224/638 (35%), Positives = 352/638 (55%), Gaps = 27/638 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
V VAEKPS+A+S+A LS N+ R G + I+E+ + MTSV GH+M
Sbjct: 318 VFMVAEKPSLAESIAKSLS-NKRNSSRRGFNGACSIHEWTGQFMSEQVRFKMTSVCGHVM 376
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF RY W DPA+L+ AP+ K K + L EA+ L+LWLDCD+EGE
Sbjct: 377 NVDFLSRYNSWDKVDPAELFVAPIEKKEANPKLKMVDFLRHEAKNAGILILWLDCDKEGE 436
Query: 130 NIAFEVIEVCRAVNCH-LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
NI FEVI +V H + RA FSA+ D+E+H A++NL +PN+ A +VDARQE+DLR
Sbjct: 437 NICFEVINCVHSVMIHPKRILRAHFSAVTDQELHGAMKNLREPNKHEALSVDARQELDLR 496
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IG +FTRFQT + + D + NLV S+GPCQ PTLGF V+R+ +IQ+ + E FW I
Sbjct: 497 IGCAFTRFQTKFFQGKYGDL---NSNLV-SFGPCQTPTLGFCVKRHDQIQSFKPETFWRI 552
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+E W+ F + I + + TV +V ++K+K P L+T+
Sbjct: 553 ------KECLFAIKWISVGTFFSCRKLFISQFLMGRIVLTVVQVSVKQKIKPRPQGLNTV 606
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
E+ + AS + M +AE LY +G+I+YPRTET ++ + +L G++Q+Q+ +P WG
Sbjct: 607 EMLRVASAGLGIGPHSAMAIAERLYTSGYINYPRTETTAYPNTFDLRGLLQQQVNNPLWG 666
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
A+ +L +GL P GHD HPPI P +F+S + + Y+LYE + +HF+A
Sbjct: 667 DLAREILH--SGL--TPPRAGHDAGDHPPIAPMRFASSQ-ELGHEAYRLYEYITQHFIAT 721
Query: 429 VSQPAVGAETIVEINIA-GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
+ +T V +++ GE+F+ SG ++ + + +++ +P + Q +
Sbjct: 722 IMPDCCYEQTQVIVSVGDGELFTISGLKVVEPGFTRILTWQAVEDKSLPKSLLNQGYQFN 781
Query: 488 TL---TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
L +L G T PP L+E++L++ M++ GIGTDA++ HI+ ++ R Y + +
Sbjct: 782 LLEEPSLIEGQTGPPDYLTESELITAMERHGIGTDASIPTHIENIVQRGYVQLLSGRKLQ 841
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PT +G LV GY + EL P++R +E + ++ G+ +K D++ LQ + A F
Sbjct: 842 PTPLGIVLVHGYQTIDAELVLPHMRRAVEEQLNHIARGH-AKYDLV---LQFVLAIFAAK 897
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ + M FE ++G+ + +CG C
Sbjct: 898 YRYFVEHINGMDQLFE--VSFTTLASSGKPLSRCGKCH 933
>gi|116192151|ref|XP_001221888.1| hypothetical protein CHGG_05793 [Chaetomium globosum CBS 148.51]
gi|88181706|gb|EAQ89174.1| hypothetical protein CHGG_05793 [Chaetomium globosum CBS 148.51]
Length = 680
Score = 362 bits (929), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 214/540 (39%), Positives = 292/540 (54%), Gaps = 67/540 (12%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP---CHMLMTSVTG 66
+L VAEKPS++K+VAG LS Q + R+ Y K Y F+Y G P C + MT+V G
Sbjct: 4 ILCVAEKPSISKAVAGHLSGGQ-YQTNNTRNTYIKNYTFDYDF-GPPWGHCSVTMTAVKG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL ++F Y++W P L+ APV +P D K I K +E++ARR +W DR
Sbjct: 62 HLTTVEFPSDYKQWEYPPPDRLFDAPVLTVIPPDNKSIAKNIEDQARRARWAC---HLDR 118
Query: 127 EGENIAFEVIEVCRAV---------NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
A E E R N ++ ++RARFS + ++ D
Sbjct: 119 ----FAIEKGETHRKARSGLPRGKGNSNIQIKRARFSNIEKSQV---------------D 159
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AV AR E+DLRIG +FTRF T+ L+ L LSYG CQFPTLGFVV+RY+ +
Sbjct: 160 AVSARIELDLRIGYAFTRFLTLNLRPLG----GPLSKLTLSYGSCQFPTLGFVVDRYFRV 215
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+ E FW I H+ ++ F+W R LFD S VI YE C+ TA VTKV+++
Sbjct: 216 KNFVPETFWGIKMMHERDDIKVNFNWSRHRLFDRMSVVIFYERCLAARTAKVTKVQEKPT 275
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K+ P PL+T+E++K A+R+ RM+ + M VAE LY GFISYPRTETD F G +L +
Sbjct: 276 KKWKPLPLTTVEMQKMATRFLRMTGQQAMTVAEKLYNKGFISYPRTETDRFDKGMDLRAL 335
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
V++Q WG +AQ L+D G ++ P G HDDKAHPPIHP +++ + ++
Sbjct: 336 VRKQTQDNRWGAFAQNLVD---GGFQQPRQGRHDDKAHPPIHPITYAAAGA-LDDSERRV 391
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YELV E F G ++LA+NYLDVY +E+W G
Sbjct: 392 YELVA---------------------YGDEAFHAHGVIVLARNYLDVYPYENWTGTAQLP 430
Query: 478 YVHGQQFI--PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
+H P G T PP L+EADL++ MD GIGTDATM +HI+K+ +R YA
Sbjct: 431 RLHASASASSPPRPCSTEGKTGPPGYLTEADLIALMDANGIGTDATMAEHIEKIQERQYA 490
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 543 FAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
F PT++G AL+ G+D M +E L KP LR ME MK + G +K VL L + +
Sbjct: 554 FIPTSLGVALIEGFDRMRFETSLGKPFLRKEMELKMKAICDGRTTKQAVLHESLSEYRQV 613
Query: 601 FLDARLKKVKLLEA-----------------MGIFFERWSGGEDQQAAGEVVRQC 638
+ +R ++ +L+A +G +RW+G Q + R
Sbjct: 614 YDQSR-AELNILKAGTNAGRSRVVGERDVMWIGGGADRWTGTRSSQGRQSIDRMA 667
>gi|195469926|ref|XP_002099887.1| GE16470 [Drosophila yakuba]
gi|194187411|gb|EDX00995.1| GE16470 [Drosophila yakuba]
Length = 878
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 224/640 (35%), Positives = 338/640 (52%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
+VL VAEKPS+A S+AGILS N + G +E+ + R + H MTSV GH
Sbjct: 3 SVLMVAEKPSLAASLAGILS-NGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF +Y W DP +L+ P K K+ ++ L EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFISKYNSWDKVDPVELFGCPTEKKETNPKQHMRTFLAHEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ V V V RA FSA+ +++I A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVQHVIHNVYSKQVTYRAHFSAITEKDIKGAMETLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 238 SFWHLQLLAGQPE--FTLEWARGRVFKKDIAIMLLGRVKEHKEATVESVASKEAFKSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G+ISYPRTET+ + + +L ++
Sbjct: 296 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVLHVLKP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ +L G + P G D HPPI P K + S + +D +++YE + R
Sbjct: 356 SGDFGEEARSIL----GDMQTP-RKGKDAGDHPPITPMKLGN-RSDFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ VS+ T ++ + E FS + V++ + V ++++G +P +V G
Sbjct: 410 HFMGTVSRDLKYRVTTAKLRVGLETFSCTANVLIDAGFTKVMTWQAFGRDEPMPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP L+E++L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 QVAINDVRLTESQTGPPDYLTESELITLMEQHGIGTDASIPVHINNICQRNYVHIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +R+ +E + ++ G+ + DVL + ++ K F
Sbjct: 530 LIPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKF- 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ VK + M FE +G+ +CG C+
Sbjct: 589 ---MYFVKNIANMDSLFE--VSFSPLAESGKAHSRCGKCR 623
>gi|71664077|ref|XP_819023.1| DNA topoisomerase III [Trypanosoma cruzi strain CL Brener]
gi|70884306|gb|EAN97172.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 362 bits (928), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 223/635 (35%), Positives = 330/635 (51%), Gaps = 23/635 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A LS Q + RSR +YE++ P + +TS TGH+
Sbjct: 4 TVLMVAEKPSLAESIAFHLSNGQAAK----RSRALPVYEYSGYFFNTPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W + DL+ APV ++ + + L EA C LVLWLDCDREG
Sbjct: 60 FSCDFTPQHQSWDRTEEEDLFSAPVVWK--DEAGKVSRHLAHEAEGCDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R +++ + RA+FSA+ EI A +L PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRRSIHDMRDIWRAKFSAITREEITHAFLHLGKPNKNVSDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTR+QT + + D + V+SYGPCQ PTL F V+R+ EI + E +W
Sbjct: 178 KVGVAFTRYQTKYFQGKYGDLDSS----VVSYGPCQTPTLAFCVQRHDEILNFKPENYWK 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+ TF W RG +FD A ++++ A VT V + P L+T
Sbjct: 234 LVPVSNRFGSLMTFDWARGRVFDDLMARLLHQKVSHHRAAKVTDVSVGVDTRARPTALNT 293
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL K AS+ M H M++AE+LY G+ISYPRTE+ ++ S N + Q P W
Sbjct: 294 VELMKVASKALGMGPHHAMQIAENLYIGGYISYPRTESTAYPSSFNFMAALTAQERSPIW 353
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G Y Q LL H G D HPPI P + ++ + S D ++LYE + RHF+A
Sbjct: 354 GNYVQELLAHG----HTRPKAGKDAGDHPPITPMRLATPQ-ELSGDSWRLYEYIARHFIA 408
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFIP 486
+S T + I I GE+FS +G+V+ + V + +PT + G F
Sbjct: 409 SLSPDCKLTRTKLLIEIGGELFSFTGKVVEDPGFTTVLPQFAVKDDKVPTNIQVGSDFPI 468
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ + L +G T+PP L+EADL+ M+K GIGTDA++ H+ +++R Y PT
Sbjct: 469 SDVRLQAGQTQPPGYLTEADLIGLMEKHGIGTDASISQHVNNIVERGYCAVKPGRVMEPT 528
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G L+ G + EL P +RS +E + ++ G S +VL+ L F +
Sbjct: 529 KLGVVLIHGIKSIDPELVLPLVRSKVEEYVTCIAEGRASLDEVLSYSLDLFFGKFRFFKQ 588
Query: 607 KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ MG F S A G+ + +CG C
Sbjct: 589 NIERFDALMGASFSSLS------ALGKPITRCGNC 617
>gi|449477313|ref|XP_002199057.2| PREDICTED: DNA topoisomerase 3-beta-1 [Taeniopygia guttata]
Length = 1002
Score = 361 bits (927), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 219/615 (35%), Positives = 324/615 (52%), Gaps = 23/615 (3%)
Query: 36 REGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLY-HAPVR 94
R+G + ++E+ S GQ H MTSV GH+M LDF +Y W DPA+L+ AP
Sbjct: 169 RKGLNGACSVHEYTGSFIGQSAHFKMTSVCGHVMTLDFIGKYNSWDKVDPAELFSKAPTE 228
Query: 95 KHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAV-----NCHLVLR 149
K K + K L+ E R C +VLWLDCD+EGENI FEV++ V +
Sbjct: 229 KKEANPKLTMVKFLQVEGRGCDCIVLWLDCDKEGENICFEVLDAVLPVMNKPRGTERTIY 288
Query: 150 RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSV 209
RA+FS++ D +I A+ +L +PN+ A +VDARQE+DLRIG +FTRFQT K F
Sbjct: 289 RAKFSSITDTDICNAMNHLGEPNRNEALSVDARQELDLRIGCAFTRFQT---KYFQGKYG 345
Query: 210 TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSE-EGTATFSWMRGHL 268
D +L+ S+GPCQ PTLGF VER+ +IQ+ + E +W + E E + T W R +
Sbjct: 346 NLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNPEKESSLTLDWDRVRV 404
Query: 269 FDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKV 328
FD A + + A V V ++EK+K P L+T+E+ + AS M +H M++
Sbjct: 405 FDREVAQMFLNITKMAKEAKVESVSKKEKVKQRPLALNTVEMLRVASAALGMGPQHAMQI 464
Query: 329 AEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSG 388
AE LY G+ISYPRTET + +L G +++Q +P W + LL R
Sbjct: 465 AERLYTQGYISYPRTETTHYPENFDLKGCLRQQANNPYWAETVKVLLSEGINRPRK---- 520
Query: 389 GHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
GHD HPPI P + ++ E+ D ++LYE + RHF+A VS +T + +I E
Sbjct: 521 GHDAGDHPPITPMR-AATEAELGGDGWRLYEYITRHFIATVSADCKYLQTTISFSIGPER 579
Query: 449 FSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
F+ G+V+ + + ++ + S +P G F + L T PP L+EA+L
Sbjct: 580 FTCVGKVVTSPGFTEIMPWHSIPLEESLPHCEKGDLFPIGEIKLLEKQTSPPDYLTEAEL 639
Query: 508 LSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPN 567
++ M+K GIGTDA++ HI + R Y ++ R PTN+G LV GY + EL P
Sbjct: 640 ITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPT 699
Query: 568 LRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGED 627
+RS +E + +++G + VL + L K F + E M + F +
Sbjct: 700 IRSAVEKQLNLIALGKANYHQVLEHTLDIFKRKFHYFVDSIAGMDELMEVSFSPLA---- 755
Query: 628 QQAAGEVVRQCGICQ 642
A G+ + +CG C
Sbjct: 756 --ATGKPLSRCGKCH 768
>gi|126649305|ref|XP_001388324.1| DNA topoisomerase III beta-1 [Cryptosporidium parvum Iowa II]
gi|32398820|emb|CAD98530.1| DNA topoisomerase III beta-1, probable [Cryptosporidium parvum]
gi|126117418|gb|EAZ51518.1| DNA topoisomerase III beta-1, putative [Cryptosporidium parvum Iowa
II]
Length = 835
Score = 361 bits (927), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 217/644 (33%), Positives = 343/644 (53%), Gaps = 27/644 (4%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
PI VL VAEKPS++ +++ ILS N L R G++ ++EFN + G +TSV G
Sbjct: 3 PIKVLMVAEKPSISDTISRILS-NGKLDTRRGKT---PVHEFNGTFMGMNVQFRVTSVAG 58
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ E+DF + Y W DP L+ AP+ K+ E + LE+E++ C +LVLWLDCDR
Sbjct: 59 HVFEIDFPQSYSNWEKTDPVSLFDAPIIKN--ESSSKMVSHLEKESKGCSYLVLWLDCDR 116
Query: 127 EGENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
EGENI FEVI V + + + RA+FS++ +I A++NL PN+ +DAVD
Sbjct: 117 EGENICFEVINVVSNNMSKGRDQRDWIFRAKFSSISPGDIFFAMKNLTFPNKNESDAVDV 176
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
RQE+DL+IG +F+R QT LK+ D +++ ++SYGPCQ PTL F V+R I +
Sbjct: 177 RQELDLKIGVAFSRLQTKYLKSKFGDF---NKSSIISYGPCQTPTLFFTVQRRDSINSFI 233
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEP--TATVTKVRQQEKLK 299
E+++TI+ + + W R +F+ A ++ + +A V + + +
Sbjct: 234 PEKYYTISATLSKDSQDINLIWSRSRVFELQVANCFLQLIQNKKPLSARVVDITSKNSRR 293
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
P PL+T+ + K +S + T+ +AE LY +GF +YPRTET + ++ +
Sbjct: 294 IRPLPLNTVSMLKLSSTILGIGPFQTLNIAEKLYLSGFTTYPRTETSRYPKNFDIKSTIA 353
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+ WG Y+ LL L P G D HPPI P + S+ ++ D ++LY+
Sbjct: 354 MFKNNSVWGSYSSDLLQKGFNL---PRKDGLDLGDHPPITPVR-SATQNDLDGDSWRLYD 409
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTY 478
L+ RHF A +S ++ ++ GE+F SG ++ + + R +IP +
Sbjct: 410 LITRHFFATISNDIKMINRTIKFDLNGEIFIISGNQVIDHGFSVIQGRAACHESNIIPDF 469
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
+ + + S T+PPP+LSE+DLLS M+K GIGTDA+M HI+K+ +R Y
Sbjct: 470 TLNEVVPIKNIEILSKETKPPPILSESDLLSLMEKHGIGTDASMPTHIQKIQEREYVKLA 529
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
+ R PT +G ALV G ++ +EL P +RS ME + ++ G + VL + L K
Sbjct: 530 SGRRLEPTKLGIALVHGIMNIDHELVLPKIRSEMEKYVDLIAKGKYNHKAVLKHSLSVFK 589
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
FL + + L E++ G + A+ + +CG C+
Sbjct: 590 LKFL-YFAENISLFESLFRL-----GFTNITASCSRISRCGQCK 627
>gi|407420057|gb|EKF38435.1| DNA topoisomerase III, putative [Trypanosoma cruzi marinkellei]
Length = 851
Score = 361 bits (927), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 225/635 (35%), Positives = 333/635 (52%), Gaps = 23/635 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A LS Q + RSR +YE++ P + +TS TGH+
Sbjct: 4 TVLMVAEKPSLAESIAFHLSNGQAAK----RSRALPVYEYSGHFFNTPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W + DL+ APV ++ + + L EA C LVLWLDCDREG
Sbjct: 60 FSCDFTPQHQNWDRTEEEDLFSAPVVWK--DEAGKVSRHLAHEAEGCDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R ++ + RA+FSA+ EI A NL PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRRSIYDMRDIWRAKFSAITREEITHAFLNLGKPNKNVSDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTR+QT + + D + V+SYGPCQ PTL F V+R+ EI + E +W
Sbjct: 178 KVGVAFTRYQTKYFQGKYGDLDSS----VVSYGPCQTPTLAFCVQRHDEILNFKPENYWK 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+ TF W+RG +FD A ++++ +A V V + P L+T
Sbjct: 234 LVPVSNRFGSLMTFDWVRGRVFDDLMARLLHQKVSHHRSAKVVDVSVGVDTRARPTALNT 293
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL K AS+ M H M+VAE+LY G+ISYPRTE+ ++ S N + Q P W
Sbjct: 294 VELMKVASKALGMGPHHAMQVAENLYIGGYISYPRTESTAYPSSFNFMAALAAQERSPIW 353
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G Y Q LL A G R G D HPPI P + ++ + S D ++LYE + RHF+A
Sbjct: 354 GNYVQELL--ARGHTRP--KAGKDAGDHPPITPMRLATPQ-ELSGDSWRLYEYIARHFIA 408
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFIP 486
+S T + I I GE+F+ +G+V+ + V + +PT + G F
Sbjct: 409 SLSPDCKLTRTKLLIEIGGELFNFTGKVVEDPGFTTVLPQFAVKDDKVPTNIQVGSDFPI 468
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ + L +G T+PP L+EADL+ M+K GIGTDA++ H+ +++R Y PT
Sbjct: 469 SDVRLQAGQTQPPGYLTEADLIGLMEKNGIGTDASISQHVNNIVERGYCAVKPGRVMEPT 528
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G L+ G + EL P +RS +E + ++ G S +VL+ L F +
Sbjct: 529 KLGVVLIHGIKSIDPELVLPLVRSKVEEYVTFIAEGRASLDEVLSYSLDLFFGKFRFFKQ 588
Query: 607 KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ MG F S A+G+ + +CG C
Sbjct: 589 NIERFDALMGASFSSLS------ASGKPITRCGNC 617
>gi|195448334|ref|XP_002071612.1| GK10076 [Drosophila willistoni]
gi|194167697|gb|EDW82598.1| GK10076 [Drosophila willistoni]
Length = 884
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 226/640 (35%), Positives = 337/640 (52%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
VL VAEKPS+A S+A ILS N + G + +E+ + R + H MTSV GH
Sbjct: 3 TVLMVAEKPSLAASLANILS-NGRCTAKRGTNNGCSTHEWTGNFRNEGSVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF +Y W DP +L+ P K K+ ++ L EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFISKYNSWDKVDPVELFGCPTEKKETNPKQHMRTFLAHEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ V R V V RA FSA+ +++I A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVQHVIRNVYTPQVTYRAHFSAITEKDIKGAMEKLGFPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W R +F A+++ + ++ A V V +E K P
Sbjct: 238 SFWYLQLLAGQPE--FTLEWARVRVFKKDIAIMLMQKVKEQKEAMVESVTSKETFKSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY GFISYPRTET+ + + +L +V+
Sbjct: 296 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGFISYPRTETNQYPANFDLPAVVRVLQP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
++G A+ + A + P G D HPPI P K + + +D +++YE + R
Sbjct: 356 SNEFGDDAREI----ATDMQTP-RKGKDAGDHPPITPMKLAQ-RGEFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HFL VS+ T ++ + E FS S V++ + V ++++G IP +V G
Sbjct: 410 HFLGTVSRDLKYRVTTAKLKVGLECFSCSANVLMDAGFTKVMTWQAFGRDEAIPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + L T PP L+EA+L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 KVAINDVRLAESQTGPPDYLTEAELITLMEQHGIGTDASIPVHINNICQRNYVRIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +RS +E + ++ G+ + DVL + +Q K F
Sbjct: 530 LIPTTLGIVLVHGYQKIDPELVLPTMRSEVERMLTLIAKGSANFNDVLRHAIQIFKLKF- 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ VK + M FE +G+ +CG C+
Sbjct: 589 ---MYFVKNIANMDALFE--VSFSPLAESGKAHSRCGKCR 623
>gi|157129809|ref|XP_001655482.1| prokaryotic DNA topoisomerase [Aedes aegypti]
gi|108872077|gb|EAT36302.1| AAEL011603-PA [Aedes aegypti]
Length = 856
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 220/639 (34%), Positives = 339/639 (53%), Gaps = 22/639 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+ L VAEKPS+A S+A ILS N R+G + ++E+ + RG+ MTSV GH+
Sbjct: 3 SALMVAEKPSLAASLATILS-NGKCSSRKGSNNACSVHEWFGNFRGEQVKFKMTSVCGHI 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M L+F ++ W DPA+L+ P K + L +EA+ C++L+LWLDCD+EG
Sbjct: 62 MGLEFVGKFNSWDKVDPAELFSCPTEKKESTPNLRMPAFLSQEAKGCEYLILWLDCDKEG 121
Query: 129 ENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
ENI FEV+ V R V + V RA+FSA+ D++I A+ NL+ PN+ A +VDARQE
Sbjct: 122 ENICFEVMAAVSGVMRNVFSNRVTYRAKFSAITDKDIKYAMDNLIHPNENEAKSVDARQE 181
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DLRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + E
Sbjct: 182 LDLRIGCAFTRFQTKFFQGKYADL---DASLI-SYGPCQTPTLGFCVQRHDEIQTFKPES 237
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
FW + + E W R +F+ A + + A V V +E + P
Sbjct: 238 FWYVQVT-VGENPEIKLEWSRVRIFEKEVACMFLNKVKDQKEALVESVTSKETFRSRPQA 296
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+T+EL + AS + M++AE LY G+ISYPRTET + + +L G+V+
Sbjct: 297 LNTVELMRAASAGLGIGPHTAMQIAEKLYTRGYISYPRTETTQYPTNFDLVGVVKLLQPS 356
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
++G A+ +L + + G+D HPPI P K +S D ++LY+ + RH
Sbjct: 357 SEFGEEARDILRDMSSPRK-----GNDAGDHPPITPMKLASRNELDGGDTWRLYDYICRH 411
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQQ 483
FL +S+ T + I E+F+ + V++ Y V ++++ VI + ++
Sbjct: 412 FLGTISRDLKYRLTTTKFKINNELFTNTSSVLIDPGYTKVMTWQAFNKNEVITPFTVNEK 471
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ L T PP L+E++L+S M+K GIGTDA++ HI + R Y
Sbjct: 472 VKINDVRLVESQTGPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVAIGGGRTL 531
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PTN+G LV GY + EL P +RS +E + ++ G+ VL + ++ + FL
Sbjct: 532 TPTNLGIVLVHGYRKIDPELVLPTMRSAVEQQLNLIAHGSADYRLVLKHAVEIFRLKFLY 591
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ + M I FE + ++G+ + +CG C+
Sbjct: 592 F----VQNISNMDILFE--ATFSSLCSSGKALSRCGKCR 624
>gi|260801485|ref|XP_002595626.1| hypothetical protein BRAFLDRAFT_64736 [Branchiostoma floridae]
gi|229280873|gb|EEN51638.1| hypothetical protein BRAFLDRAFT_64736 [Branchiostoma floridae]
Length = 684
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 184/404 (45%), Positives = 249/404 (61%), Gaps = 22/404 (5%)
Query: 337 FISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHP 396
FISYPRTET+ FS T+L G+VQ Q PDWG +A +L NP +G D AHP
Sbjct: 1 FISYPRTETNKFSKDTDLQGLVQLQTVDPDWGGFAAGVLQRGP----NPRNGNKTDNAHP 56
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
PIHPTK++ + +LYE +VRHFLAC+SQ A G ET VEI+I GE F+ G +I
Sbjct: 57 PIHPTKYTD---NLQGNEKRLYEFIVRHFLACLSQDAQGQETTVEIDINGEKFTAQGLMI 113
Query: 457 LAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
+A+NYLDVY ++ W VIP + G+ F P+ + + G T PPPLL+EADL++ MDK GI
Sbjct: 114 IARNYLDVYPYDKWNAKVIPVFNQGETFQPSAIEMLQGQTSPPPLLTEADLIALMDKHGI 173
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDM 576
GTDAT +HI+ + R Y + RF P +G LV GYD MGYE+ KP+LR+ +E+D+
Sbjct: 174 GTDATHAEHIETIKSRMYVGVQQDGRFVPGELGMGLVEGYDAMGYEMSKPHLRAELEADL 233
Query: 577 KEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGE--- 633
K + G K VLA +Q+ K F++A + +KL EA+G +F GE Q A +
Sbjct: 234 KLICEGRKDPKVVLAEQVQKYKQVFIEACAQALKLDEALGTYF-----GEAQPFAEQDMN 288
Query: 634 ------VVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
VR C C ES MV+K +DG LM+ C+ +P CR W P +V EA C
Sbjct: 289 PVQVSPPVRPCPQCGES-MVIKTRKDGGLMLSCMGYPDCRAVAWFPANVLEATRDEAICT 347
Query: 688 SCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEI 731
C PGPV+ I+FKF++ +PP +++LGCIGGCDET+ +L +
Sbjct: 348 RCQPGPVHKIKFKFKRGSVPPIIPLDYLGCIGGCDETVCELFNL 391
>gi|407853208|gb|EKG06290.1| DNA topoisomerase III, putative [Trypanosoma cruzi]
Length = 852
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 225/635 (35%), Positives = 333/635 (52%), Gaps = 23/635 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A LS Q + RSR +YE++ P + +TS TGH+
Sbjct: 4 TVLMVAEKPSLAESIAFHLSNGQAAK----RSRALPVYEYSGYFFNTPAYFKVTSTTGHV 59
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
DF +++ W + DL+ APV ++ + + L EA C LVLWLDCDREG
Sbjct: 60 FSCDFTPQHQSWDRTEEEDLFSAPVVWK--DEAGKVSRHLAHEAEECDTLVLWLDCDREG 117
Query: 129 ENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEV++V R +++ + RA+FSA+ EI A +L PN+ +DAV RQE+DL
Sbjct: 118 ENICFEVMQVVRRSIHDMRDIWRAKFSAITREEITHAFLHLGKPNKNVSDAVTCRQELDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++G +FTR+QT + + D + V+SYGPCQ PTL F V+R+ EI + E +W
Sbjct: 178 KVGVAFTRYQTKYFQGKYGDLDSS----VVSYGPCQTPTLAFCVQRHDEILNFKPENYWK 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
+ TF W RG +FD A ++++ A VT V + P L+T
Sbjct: 234 LVPVSNRFGSLMTFDWARGRVFDDLMARLLHQKVSHHRAAKVTDVSVGVDTRARPTALNT 293
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+EL K AS+ M H M++AE+LY G+ISYPRTE+ ++ S N + Q P W
Sbjct: 294 VELMKVASKALGMGPHHAMQIAENLYIGGYISYPRTESTAYPSSFNFMTALTAQERSPIW 353
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G Y Q LL A G R G D HPPI P + ++ + S D ++LYE + RHF+A
Sbjct: 354 GNYVQELL--ARGHTRP--KAGKDAGDHPPITPMRLATPQ-ELSGDSWRLYEYIARHFIA 408
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFIP 486
+S T + I I GE+FS +G+V+ + V + +PT + G F
Sbjct: 409 SLSPDCKLTRTKLLIEIGGELFSFTGKVVEDPGFTTVLPQFAVKDDKVPTNIQVGSDFPI 468
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ + L +G T+PP L+EADL+ M+K GIGTDA++ H+ +++R Y PT
Sbjct: 469 SDVRLQAGQTQPPGYLTEADLIGLMEKYGIGTDASISQHVNNIVERGYCAVKPGRVMEPT 528
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G L+ G + EL P +RS +E + ++ G S +VL+ L F +
Sbjct: 529 KLGVVLIHGIKSIDPELVLPLVRSKVEEYVTCIAEGRASLDEVLSYSLDLFFGKFRFFKQ 588
Query: 607 KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ MG F S A+G+ + +CG C
Sbjct: 589 NIERFDALMGASFSSLS------ASGKPITRCGNC 617
>gi|303285318|ref|XP_003061949.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456360|gb|EEH53661.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 862
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 217/607 (35%), Positives = 324/607 (53%), Gaps = 28/607 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A S+AG LS R G+ ++EF GQ C +T+V GH+
Sbjct: 3 TVLCVAEKPSLAASIAGFLSDGTHKTRRGGQD----VHEFVRVYDGQRCDFKVTAVCGHV 58
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ +DF ++Y+ W DP L+ APV K + LE+EA+ LVLWLDCDREG
Sbjct: 59 LSIDFPDKYQDW-DVDPGALFDAPVVKKEASPGARVVSHLEQEAKGATHLVLWLDCDREG 117
Query: 129 ENIAFEVIEVC-------RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
ENI +EV++ C ++RA+FSA+ I +A+ L PN+ A AVDA
Sbjct: 118 ENICYEVVDACVPRMRPPPGAARDDYVKRAKFSAVSKESIERAMATLGTPNRHEAMAVDA 177
Query: 182 RQEIDLRIGASFTRFQTMLLKNFH--IDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
RQE+DL++G +FTRFQT + + +D+ V+SYGPCQ PTL F VER+ +I
Sbjct: 178 RQELDLKLGVAFTRFQTRYFRGKYAALDAS------VVSYGPCQTPTLNFAVERHLDIAK 231
Query: 240 HESEEFWTINCSHKSEEG--TATFSWMRGHLFDYTSAVIIYEMCVQEPTA---TVTKVRQ 294
H E++W + + +S E W R +FD +A + + V + A +T +
Sbjct: 232 HVPEDYWVLCVTARSTETDEVVALRWNRERVFDRDAAELFKRLVVDDARANGVALTAFTR 291
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
E+ + P L+T+E+ K AS M + M+VAE LY +GFISYPRTE+ ++ G +L
Sbjct: 292 TEEKRPRPSGLNTVEMLKAASAGLGMGAHAAMQVAERLYISGFISYPRTESTAYPPGFDL 351
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
G + Q HP WG + LLD G P GG D+ HPPI PT+ ++ E D
Sbjct: 352 RGTLSAQRHHPAWGEHVAELLD--GGAMTRP-RGGKDEGDHPPIAPTRSATSERVGGGDA 408
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
++LY+ + RHF+A +S GE F+ G+ ++ + + + +
Sbjct: 409 WRLYDFIARHFIASLSPDCAYDVQRASFACGGEGFAVVGQSVIEPGWTKMMPWRAIEEDP 468
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
+P G + + L + T PPP LSE+DL+S M+K GIGTDA++ HI + R Y
Sbjct: 469 LPELTPGAKLAIAGVELTTSQTSPPPYLSESDLISLMEKNGIGTDASIPAHINNVEKRGY 528
Query: 535 AIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
A R PT++G L GY + +L P++R+ +E + ++ G + A V+A+ L
Sbjct: 529 VKIGAGRRVVPTDLGVTLTRGYHAIDPDLALPSMRASVEKQLDLIASGEATHAAVVAHAL 588
Query: 595 QQMKACF 601
+Q A F
Sbjct: 589 KQFAAKF 595
>gi|449664547|ref|XP_002159450.2| PREDICTED: DNA topoisomerase 3-alpha-like [Hydra magnipapillata]
Length = 772
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/446 (42%), Positives = 266/446 (59%), Gaps = 12/446 (2%)
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
+ P ATVT + + K K+ P L T+ELEK ASR +++++ TMK+AE LY G ISYP
Sbjct: 7 LSNPRATVTNMISKPKSKWRPVALDTVELEKLASRKLKINAKETMKIAEKLYTQGIISYP 66
Query: 342 RTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT 401
RTET+ F G NL +V+ Q P WG +A +L A NP G D AHPPIHP
Sbjct: 67 RTETNIFPKGLNLTPLVENQTVDPQWGGFASNIL---ANNGPNPRQGKKTDNAHPPIHPI 123
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY 461
K+ + ++YE +VRHFLACVS+ AVG ET+ EI I+GE F+ G VI +NY
Sbjct: 124 KYIDS---LQGNEKRIYEFIVRHFLACVSKDAVGHETVFEIEISGEYFTVHGLVITERNY 180
Query: 462 LDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDAT 521
LDVY +E W IP Y G+ F P ++ L SG T PPPLL+EADL++ MDK GIGTDAT
Sbjct: 181 LDVYPYEQWNTKNIPIYQLGEVFFPDSIELVSGETCPPPLLTEADLITLMDKHGIGTDAT 240
Query: 522 MHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSV 581
+HI+ + R Y + F P +G ALV GYD MG+ + KP+LR+ +E+D+ +
Sbjct: 241 HAEHIETIKSRNYVGVQHDGTFLPGQLGMALVEGYDAMGFAMSKPHLRASLEADLVLICQ 300
Query: 582 GNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQ--QAAGEVVRQCG 639
G K++ +VL +Q K F A + KL +++ +F S D + VR+C
Sbjct: 301 GLKNEKEVLTQQIQSYKNVFEQAVAQVHKLDDSLSKYFGEASDVTDDIFNEMSDPVRKCP 360
Query: 640 ICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQF 699
C +NM L R + +GC+ +P CRN+++ P + A + TC C P PV+ I+F
Sbjct: 361 KCG-NNMTL---RYFSFFLGCMGYPNCRNSLFFPKFLLNAVRSDTTCLHCKPHPVHKIEF 416
Query: 700 KFRQHEIPPGFNVNHLGCIGGCDETL 725
F++ +PPGF +++GCIGGCDE L
Sbjct: 417 HFKRGSMPPGFGEHYIGCIGGCDEML 442
>gi|194896190|ref|XP_001978430.1| GG17682 [Drosophila erecta]
gi|190650079|gb|EDV47357.1| GG17682 [Drosophila erecta]
Length = 878
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 223/640 (34%), Positives = 337/640 (52%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
+VL VAEKPS+A S+AGILS N + G +E+ + R + H MTSV GH
Sbjct: 3 SVLMVAEKPSLAASLAGILS-NGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF +Y W DP L+ P K K+ ++ L EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFISKYNSWDKVDPVQLFGCPTEKKETNPKQHMRTFLAHEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIE----VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ V V V RA FSA+ +++I A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVQHVIHNVYSKQVTYRAHFSAITEKDIKGAMETLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 238 SFWHLQLLAGQPE--FTLEWARGRVFKKDIAIMLLGRVKEHKKATVESVASKEAFKSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G+ISYPRTET+ + + +L ++
Sbjct: 296 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLAAVLHVLKP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ +L G + P G D HPPI P K + S + +D +++YE + R
Sbjct: 356 SGDFGEEARSIL----GDMQTP-RKGKDAGDHPPITPMKLGN-RSDFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ VS+ T ++ + E FS + V++ + V ++++G +P +V G
Sbjct: 410 HFMGTVSRDLKYRVTTAKLRVGLETFSCTANVLIDAGFTKVMTWQAFGKDEPMPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + L T PP L+E++L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 EVAINDVRLTESQTGPPDYLTESELITLMEQHGIGTDASIPVHINNICQRNYVHIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +R+ +E + ++ G+ + DVL + ++ K F
Sbjct: 530 LIPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKF- 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ VK + M FE +G+ +CG C+
Sbjct: 589 ---MYFVKNIANMDSLFE--VSFSPLAESGKAHSRCGKCR 623
>gi|281337636|gb|EFB13220.1| hypothetical protein PANDA_021957 [Ailuropoda melanoleuca]
Length = 839
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 216/606 (35%), Positives = 325/606 (53%), Gaps = 23/606 (3%)
Query: 45 IYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKD 103
++E++ + GQP MTSV GH+M LDF +Y KW DPA+L+ AP K K +
Sbjct: 15 VHEYSGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLN 74
Query: 104 IKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAV-----NCHLVLRRARFSALID 158
+ K L+ E + C ++VLWLDCD+EGENI FEV++ V + RARFS++ D
Sbjct: 75 MVKFLQVEGKGCDYIVLWLDCDKEGENICFEVLDAVLPVMNPTHGGEKTVFRARFSSITD 134
Query: 159 REIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLS 218
+I A+ L +P+ A +VDARQE+DLRIG +FTRFQT K F D +L+ S
Sbjct: 135 TDICAAMARLGEPDHNEALSVDARQELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-S 190
Query: 219 YGPCQFPTLGFVVERYWEIQAHESEEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVII 277
+GPCQ PTLGF VER+ +IQ+ + E +W + + ++ + W R +FD A +
Sbjct: 191 FGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNVDKDRSLLLDWDRVRVFDREIAQMF 250
Query: 278 YEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 337
M E A V ++EK K P L+T+E+ + AS M +H M+ AE LY G+
Sbjct: 251 LNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGY 310
Query: 338 ISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPP 397
ISYPRTET + +L G +++Q HP W +RLL A G+ N GHD HPP
Sbjct: 311 ISYPRTETTHYPENFDLKGPLRQQANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPP 366
Query: 398 IHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL 457
I P + S+ E+ + ++LYE + RHF+A VS ++ + I E F+ +G+ ++
Sbjct: 367 ITPMR-SATEAELGSEAWRLYEYITRHFIATVSYDCRYLQSTISFRIGPEHFTCTGKTVI 425
Query: 458 AKNYLDVYRFESWG-GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
+ + ++ ++S +PT G F + + + T PP L+EA+L++ M+K GI
Sbjct: 426 SPGFTEIMPWQSVPLEESLPTCQRGDTFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGI 485
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDM 576
GTDA++ HI + R Y ++ R PTN+G LV GY + EL P +RS +E +
Sbjct: 486 GTDASIPVHINNICQRNYVTVESGRRLRPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQL 545
Query: 577 KEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVR 636
++ G VL + L K F + E M + F + A G+ +
Sbjct: 546 NLIAQGKADYRQVLGHTLDVFKRKFHYFVDSIAGMDELMEVSFSPLA------ATGKPLS 599
Query: 637 QCGICQ 642
+CG C
Sbjct: 600 RCGKCH 605
>gi|118385846|ref|XP_001026048.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89307815|gb|EAS05803.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1374
Score = 359 bits (922), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 220/674 (32%), Positives = 364/674 (54%), Gaps = 34/674 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
V+ +AEKPS+AKS+A LS N ++ G S+Y ++EF +G +TSV GH+
Sbjct: 537 VVMIAEKPSIAKSIADALSNNSSKSVK-GYSKYLPVHEFEGQFKGNRVLFKVTSVAGHVY 595
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDF + Y +W+ +P +L+ A K + + K LE+EA+ +L+LWLD DREGE
Sbjct: 596 SLDFQKEYDQWNKVNPINLFSAKTIKVEANPSQGVVKHLEKEAQDASYLILWLDNDREGE 655
Query: 130 NIAFEVIEVCRAVNCH----LVLRRARFSALIDREIHQAVQNLVD-PNQWFADAVDARQE 184
NI FEV +C A C + RA+FS+L ++ QA +N+ D PN + AVDARQ
Sbjct: 656 NICFEVKSICEAFMCKEQNTQQILRAKFSSLTKSDLVQAFKNVRDPPNMNESKAVDARQI 715
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
IDL+IGA+FTR+QT+ +N + + + ++S+GPCQ PTLGF VER EI+ +
Sbjct: 716 IDLKIGAAFTRYQTLFFRNRYPELNEN----IISFGPCQTPTLGFCVEREDEIKNFKPRL 771
Query: 245 FWTINCSHKSEEGTATFSWM-RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
++ I + +E+G S+ +GH++D + I++ + + +T+V K P
Sbjct: 772 YFRIRATFVTEDGMEVVSYCDKGHIYDQGESNKIFKDVLNQQHIQITQVSSDFGTKQRPE 831
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T++L K AS Y MS TM VAE LY G+I+YPRTE+ ++ I+
Sbjct: 832 GLNTVQLLKIASSYLHMSPMETMHVAERLYLNGYITYPRTESTAYPKAFQFREILNSLQS 891
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G +A LL ++ P SG D HPPI PT ++ + D KLY+ + +
Sbjct: 892 DSDYGKFASNLLQD----YKQPRSGV-DMGDHPPITPT--TNYPNSLGGDERKLYDYISK 944
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV-HGQ 482
HF+A +S+ + ++ +I F G ++ K + +V S G I + + G+
Sbjct: 945 HFIASLSEDCKYKKITIQGSICNYNFIARGIQMVNKGFTEVQDHISLGENTIASNLQQGK 1004
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA-IKDANT 541
Q T++ + T P ++E++L+S M+K IGTDA+M HI+ +++R Y I +N
Sbjct: 1005 QLKVTSINQEQEYTSAPGYITESELISLMEKNSIGTDASMATHIQNIVNRNYVQINGSNR 1064
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G +LV GY + EL +P +RS +E+ + +++ GNK ADV+ + ++ +A +
Sbjct: 1065 SLVPTELGRSLVHGYQKIDPELVQPQIRSKIENMVDQIAKGNKQFADVINDSMRIFQAKY 1124
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
L +K+ G F + + +CG+C +++K+ G +
Sbjct: 1125 LTFVENILKIDSLFGQFCNTLE-------SAKPFSKCGVCNRFMKIIEKA-------GKI 1170
Query: 662 AFPQCRNAVWLPGS 675
+C ++++P +
Sbjct: 1171 ICEKCDVSLFIPSN 1184
>gi|193591899|ref|XP_001951574.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 854
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 227/645 (35%), Positives = 343/645 (53%), Gaps = 35/645 (5%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+A ILS + R+ + ++E++ ++ G+P MTSV GH+M
Sbjct: 5 LMVAEKPSLASSLASILSNGRS-NSRKSMNSACPVHEWSGTLFGEPVIFKMTSVCGHVMT 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF+ ++ W DP +L+ P K K I L EAR +L+LWLDCD+EGEN
Sbjct: 64 LDFNSKFNNWDKVDPEELFSCPTEKKEASPKLRIPAMLASEARGVDFLILWLDCDKEGEN 123
Query: 131 IAFEVIEVCRA-------VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
I FEVI+ ++ VN + RA+FSA+ ++I A++ L PN+ A +VDARQ
Sbjct: 124 ICFEVIDAVKSSMKRSGDVN---RIWRAKFSAITAKDIKGAMERLDFPNRNEAMSVDARQ 180
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG SFTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EI+ + E
Sbjct: 181 ELDLRIGCSFTRFQTKYFQGKYGDL---DSSLI-SYGPCQTPTLGFCVQRHDEIRRFKPE 236
Query: 244 EFWTINC-SHKSEEGT-ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+W I +K +G +W +G F+ ++ + + ++ ATV + QQEK K
Sbjct: 237 PYWVIQVRKYKYLDGQDVVLNWEKGRCFERDASNSLLQALKKQQIATVVSITQQEKSKQR 296
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+++EL + AS M H M++AE LY G+ISYPRTET +S L ++
Sbjct: 297 PLALNSVELMRAASTGLGMGPHHAMQLAERLYIQGYISYPRTETSHYSDNFELLPAMRTL 356
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+WG +++L++ RN G D HPPI PT +S + D +KLY+ +
Sbjct: 357 QKSNEWGQEIRQVLNNGLTRPRN----GKDCGDHPPITPTMLAS-RNDLDGDSWKLYDFI 411
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPT 477
VRHF+A +S+ V I E+F+ + R ++ + + W L +
Sbjct: 412 VRHFIATISKDCRYYSKTVTFKIGSEMFTYNWRTLIDAGFTAI---TPWKALPKNELAVN 468
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ ++ L +T PP L+E++L+S M+K GIGTDA++ HI + R Y
Sbjct: 469 FERDEKLNIKDARLTDHMTSPPGYLTESELISMMEKHGIGTDASIPVHINNISQRNYVTV 528
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
R PTN+G LV GY + +L +P +RS +E + ++ G + V L+Q
Sbjct: 529 ATGRRLVPTNLGIVLVHGYQKIDKQLVEPTMRSTIEDQLNLIAKGEANYDRV----LRQT 584
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F L VK +EAM FE A+G+ + +CG C+
Sbjct: 585 IEAFRQKYLYFVKSIEAMDSLFE--VSFTTLAASGKALSRCGKCR 627
>gi|405959918|gb|EKC25894.1| DNA topoisomerase 3-beta-1 [Crassostrea gigas]
Length = 851
Score = 358 bits (920), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 230/644 (35%), Positives = 333/644 (51%), Gaps = 34/644 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFN--YSIRGQPCHMLMTSVTG 66
VL VAEKPS+A+S+A ILS Q L R+G + I+E+ + G+ MTSV G
Sbjct: 3 TVLMVAEKPSLAQSIAKILSGGQ-LNSRKGSNGACSIHEYKGKFPPTGESVSYKMTSVCG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ LDF +Y W DP +L+ AP K +K + LE+EAR +LVLWLDCD+
Sbjct: 62 HVFGLDFTGKYNSWDRVDPVELFTAPTLKKEATEKLRMPNFLEKEARGVDYLVLWLDCDK 121
Query: 127 EGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGENI FEVI+ + + RA+FSA+ D++I A+ L+ PN+ A +VDARQ
Sbjct: 122 EGENICFEVIDCAKPSMNRFSDQCVYRAKFSAITDKDIKSAMTKLIAPNKNEALSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D + ++SYGPCQ PTLG V+R+ +IQ+ + E
Sbjct: 182 ELDLRIGCAFTRFQTKYFQGKY----GDLDSTLISYGPCQTPTLGLCVDRHDKIQSFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+W E T W R +FD A + M +A V KV Q K K P
Sbjct: 238 PYWLA----LPEGRTVDIDWDRIRVFDKEVAQMFVNMIKSSDSARVLKVTQDVKSKARPQ 293
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 294 ALNTVEMLRAASSGLGMGPQHAMQMAERLYIQGYISYPRTETTQYPENFDLVGTLRQQAS 353
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
WG Y Q LL + P G D HPPI P + + E+ D ++LY+ + R
Sbjct: 354 SSMWGDYVQNLLREGI---QKPKKGT-DVGDHPPITPMR-PATEAELGHDAWRLYDFITR 408
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTYV 479
HF+ +S +T I E F+ +G + + V SW L +P +
Sbjct: 409 HFIGTISPDCKYLQTTAFFEIGAERFTCTGYRVTDPGFTAVM---SWKSLEDEWTLPEFK 465
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
+ T + + T PP L+E++L+S M+K GIGTDA++ HI + +R Y +
Sbjct: 466 KDMDYNITEVKMVEKHTSPPDYLTESELISLMEKHGIGTDASIPVHINNICERNYVTVTS 525
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
R PT +G LV GY + EL P +RS +E + ++ G DVL + L
Sbjct: 526 GRRLKPTPLGIVLVHGYQKIDIELVLPTMRSAVEKQLNLIAAGKAYFEDVLKHALNIF-- 583
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAA-GEVVRQCGICQ 642
C LK +E +G E + AA G+ + +CG C+
Sbjct: 584 C-----LKFKYFVENIGGMDELFEVTFSPLAATGKPLSRCGKCR 622
>gi|79323918|ref|NP_001031463.1| DNA topoisomerase III [Arabidopsis thaliana]
gi|51969720|dbj|BAD43552.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|51969988|dbj|BAD43686.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
gi|330253526|gb|AEC08620.1| DNA topoisomerase III [Arabidopsis thaliana]
Length = 838
Score = 358 bits (919), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 216/600 (36%), Positives = 330/600 (55%), Gaps = 29/600 (4%)
Query: 55 QPCHMLMT--SVTGHLMEL--------DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDI 104
Q C LM + H++EL DF E+Y+ W + DP DL+ AP+ K K I
Sbjct: 11 QRCMNLMACFEASKHIIELHLLSVMFSDFPEKYQNWATIDPQDLFDAPIIKKESNPKAHI 70
Query: 105 KKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC--RAVNCHLVLRRARFSALIDREIH 162
+ L EAR C ++VLWLDCDREGENI FEVIE + + RARFS++ +++I
Sbjct: 71 CRHLSNEARGCSYMVLWLDCDREGENICFEVIESTGFDMKDSKRKVYRARFSSVTEKDIS 130
Query: 163 QAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPC 222
+A+ NLV+PN+ A AVDARQEIDL++G +F+RFQT + + + D R V+SYGPC
Sbjct: 131 KAMDNLVEPNRDEALAVDARQEIDLKVGVAFSRFQTSYFQGKYQN--LDCR--VISYGPC 186
Query: 223 QFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCV 282
Q PTLGF V+RY I + E+FW + + + W R LFD +A + ++ V
Sbjct: 187 QTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAATVFQKLVV 246
Query: 283 QEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
+ TA V V +++++K P L+T+ L K AS + M +AE LY GFISYPR
Sbjct: 247 EGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLYTQGFISYPR 306
Query: 343 TETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK 402
TE+ ++ S + ++ Q+ +P WG Y QRLL + P SG D HPPI P +
Sbjct: 307 TESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDG---FHMPKSGT-DAGDHPPITPMR 362
Query: 403 FSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462
++ E D ++LY+ V +HFL VS T VE++I GE F +G+ + K +
Sbjct: 363 -AATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYIRTKVELSIGGETFHCTGQRVTEKGFT 421
Query: 463 DVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
+ + + +P+++ G++ + L G T PP L+E++L+S M+K GIGTDA++
Sbjct: 422 AIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNTAPPDYLTESELISLMEKHGIGTDASI 481
Query: 523 HDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
HI + +R Y + + PT +G L+ GY + +L P++RS +E + V+ G
Sbjct: 482 AVHINNIGERNYVQVQSGRKMVPTALGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKG 541
Query: 583 NKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
+ V+ + +QQ + F V+ +E M FE ++S D +G + +CG C
Sbjct: 542 QADHSHVVQHVIQQFRRKF----SYFVQQIEHMDALFEAQFSPLAD---SGRALSKCGKC 594
>gi|170047094|ref|XP_001851071.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
gi|167869634|gb|EDS33017.1| DNA topoisomerase 3-beta [Culex quinquefasciatus]
Length = 855
Score = 358 bits (918), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 224/638 (35%), Positives = 335/638 (52%), Gaps = 24/638 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A+S+A ILS N R+G + ++E+ + GQ MTSV GH+M
Sbjct: 5 LMVAEKPSLAQSLAQILS-NGKCSSRKGSNNACSVHEWVGNFHGQQTRFKMTSVCGHIMG 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
L+F +Y W DPADL+ K + L EA+ C +LVLWLDCD+EGEN
Sbjct: 64 LEFVGKYNSWDKVDPADLFTCATEKKESTPNLRMPAFLSHEAKGCDYLVLWLDCDKEGEN 123
Query: 131 IAFEVI----EVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
I FEV+ V + V RA+FSA+ +++I A++NL+ PN+ A +VDARQE+D
Sbjct: 124 ICFEVMASVANTIPNVYSNRVTYRAKFSAITEKDIKYAMENLIQPNENEAKSVDARQELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D +L+ SYGPCQ PTL V+R+ EIQ + E FW
Sbjct: 184 LRIGCAFTRFQTKFFQGKYADL---DASLI-SYGPCQTPTLTLCVQRHDEIQTFKPESFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + E W R +F+ A + A V V +E K P L+
Sbjct: 240 YVQVT-VGENPEIKLDWSRVRIFEKEVACMFLNKVKDHKEAIVENVSSKEAFKGRPQALN 298
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL + AS + M++AE LY G+ISYPRTET + + +L G+V+ +
Sbjct: 299 TVELMRAASAGLGIGPHSAMQIAEKLYTRGYISYPRTETTQYPTNFDLVGVVKLLQHSSE 358
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+G A+ +L N G+D HPPI P K +S D +++Y+ + RHFL
Sbjct: 359 FGDEAKSILHDM-----NSPRKGNDAGDHPPITPMKLASRNELDGGDTFRVYDYICRHFL 413
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG--LVIPTYVHGQQF 484
A VS+ +T + I E FS + V++ Y V ++++ LV+P V+ +
Sbjct: 414 ATVSRDLKYRQTSTKFKIGSEHFSNTSNVLIDPGYTKVMTWQAFAKNELVVPFIVNEKVK 473
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
I ++S T PP L+E++L+S M+K GIGTDA++ HI + R Y
Sbjct: 474 INDVRLVESQ-TGPPDYLTESELISLMEKHGIGTDASIPVHINNICQRNYVAIGGGRTLT 532
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
PTN+G LV GY + EL P +RS +E + ++ G+ VL + ++ + F
Sbjct: 533 PTNLGIVLVHGYQKIDPELVLPTMRSAVEQQLSLIAHGSADYRSVLKHAVEIFRLKF--- 589
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
L V+ + M I FE + ++G+ + +CG C+
Sbjct: 590 -LYFVQNISNMDILFE--ATFSSLSSSGKALSRCGKCR 624
>gi|392892249|ref|NP_001254381.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
gi|371571205|emb|CCF23416.1| Protein Y48C3A.14, isoform a [Caenorhabditis elegans]
Length = 869
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 220/607 (36%), Positives = 329/607 (54%), Gaps = 28/607 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKP +A S+A +LS Q + R+G + + E++ G+ +TS GH+
Sbjct: 4 TVLMVAEKPLLADSIANLLSNGQAKK-RKGWNGVCSVSEYDGQFNGRAARFKVTSTCGHV 62
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF ++ W DPA+LY AP ++ K + + L EA+ +LVLWLDCD+EG
Sbjct: 63 MSLDFPPKFNNWERVDPAELYSAPTQRIEANPKMKMNEFLASEAKNADFLVLWLDCDKEG 122
Query: 129 ENIAFEVIEVCRAVNCHLV---------LRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
ENI FEVI+ AV C + + RA FSA+ +++I A++NL P+Q + +V
Sbjct: 123 ENICFEVID---AVKCAMFKNRQDFMSDVYRAHFSAITEKDIKAAMRNLGRPDQNMSHSV 179
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
DARQE+DLRIG SFTRFQT + + D D N V+SYGPCQ PTLGF V R+ +I
Sbjct: 180 DARQELDLRIGCSFTRFQTKFFQGKYGDL---DSN-VISYGPCQTPTLGFCVTRHDQIVQ 235
Query: 240 HESEEFWTINCSHKSEEGTATFS--WMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+ E++W + + + + FS W RG +FD A + + + T V V ++E
Sbjct: 236 FKPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEVARVFVDRIKKCHTGLVLDVSKKEA 295
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K P L+T+EL + AS MS TM VAE LY G+ISYPRTET ++S+ +L G
Sbjct: 296 RKERPCALNTVELMRVASSSLGMSPSTTMHVAEALYTQGYISYPRTETTAYSANFDLTGT 355
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
++ G WG ++L A G+ R P S G D HPPI P + + G S D ++
Sbjct: 356 LKILAGDRKWGSVVSQVL--ADGIKR-PKS-GVDKGDHPPITPMRPNHGG--LSGDMSRI 409
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIP 476
YE V +HF+A + + V T V+++ E F+ G+ ++ + V + S +P
Sbjct: 410 YEYVSQHFVATLMKQCVYEVTTVKMSCGDEQFTLQGKNVVEPGFTAVMPWLSVEEECSVP 469
Query: 477 TYVH--GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
+ G + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 470 KSLQQIGAKIELQNAEIQARETTPPGYLTEAELITLMEKHGIGTDASIPVHINTITQRNY 529
Query: 535 AIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
++ R PT +G+ LV GY + EL P +R+ +E + V+ G DV + L
Sbjct: 530 VTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQLNLVASGKADYLDVKNHAL 589
Query: 595 QQMKACF 601
+ + F
Sbjct: 590 KMFEMKF 596
>gi|308480547|ref|XP_003102480.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
gi|308261212|gb|EFP05165.1| hypothetical protein CRE_04022 [Caenorhabditis remanei]
Length = 867
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 231/677 (34%), Positives = 353/677 (52%), Gaps = 36/677 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKP +A S+A +LS Q R R+G + + E++ G+ +TS GH
Sbjct: 3 LTVLMVAEKPMLADSIAHLLSNGQA-RKRKGWNGVCSVSEYDGQFNGKNAKFKVTSTCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF ++ W DPA+LY AP K K + + L EA+ +LVLWLDCD+E
Sbjct: 62 VMSLDFPAKFNNWERVDPAELYSAPAVKIEANPKMKMNEFLASEAKNADYLVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV------NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
GENI FEV++ ++ + + RA FSA+ +++I A++NL P+Q A +VDA
Sbjct: 122 GENICFEVVDAVKSAMFKNRPDYMSDVYRAHFSAITEKDIKAAMKNLSRPDQNMALSVDA 181
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
RQE+DLRIG SFTRFQT + + D D N V+SYGPCQ PTLGF V R+ +I +
Sbjct: 182 RQELDLRIGCSFTRFQTKFFQGKYGDL---DSN-VISYGPCQTPTLGFCVTRHDQIVQFK 237
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + + T + W RG +FD A + + + + V V ++E K
Sbjct: 238 PEAYWVLKTTFSCDSQTFSPEWQRGRIFDAEIARLFVDRIKKSHSGVVVDVSKKEARKER 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+EL + AS +S TM VAE LY G+ISYPRTET ++ + +L+G ++
Sbjct: 298 PCALNTVELMRVASSSLGLSPSTTMHVAESLYTQGYISYPRTETTAYPANFDLNGTLKIL 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
G WG ++L A G+ R P S G D HPPI P + ++G S D ++YE V
Sbjct: 358 SGDRKWGSVVSQVL--AEGIKR-PKS-GVDKGDHPPITPMRANTG--NLSGDMARIYEYV 411
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH 480
+HF+A + + V T V++ E F+ G+ ++ + V + S +P +
Sbjct: 412 SQHFVATLMKQCVYEVTTVKMECGEEQFTIQGKNVIDPGFTAVMPWLSVEEECSVPKSLQ 471
Query: 481 --GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G + + + T PP L+E++L++ M+K GIGTDA++ HI + R Y +
Sbjct: 472 QIGARIELQDAQIQARETTPPGYLTESELITLMEKHGIGTDASIPVHINTITQRNYVTVE 531
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ--Q 596
+ R PT +G+ LV GY + EL P +RS +E + V+ G DV + L+ +
Sbjct: 532 SGRRLVPTRLGQCLVRGYWKVDPELVLPTMRSELEEQLNLVASGKADYHDVKNHALKMFE 591
Query: 597 MKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNL 656
MK F V + A+ FE + G+ +CG C+ M L +++ L
Sbjct: 592 MKFQFF------VNNIPAVDTLFE--ASFTTLSDTGKPFSRCGKCRRY-MKLVQTKPQRL 642
Query: 657 MVGCLAFPQCRNAVWLP 673
P C+ +P
Sbjct: 643 FC-----PTCQETYSVP 654
>gi|396081254|gb|AFN82872.1| DNA topoisomerase II [Encephalitozoon romaleae SJ-2008]
Length = 622
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 294/501 (58%), Gaps = 20/501 (3%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
+V+W DCDREGENI ++ ++ V ++ ++RARFS + ++I +A++NL + N+ A+
Sbjct: 2 VVIWTDCDREGENIGRQIRDIVLKVK-NVNVKRARFSGITLKDIEEALRNLGEINEAEAE 60
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AVD R E+DLRIG++FTR QT+ L V ++ +LS+GPCQ PTLGFVVER E
Sbjct: 61 AVDVRMELDLRIGSAFTRLQTLSL-----GKVGQEKK-ILSFGPCQVPTLGFVVERARER 114
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
++ E FWT+ ++++ F+W RG +FD + ++ V E V K +E+
Sbjct: 115 ESFVPEMFWTLKFKVRNKKLEDEFTWRRGSVFDKNCVIYFHKGLVGEKAKIVLK-EMKER 173
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
+KY P PL T+EL+K+ S YFR+S M+VAE LY G+ISYPRTETD F + I
Sbjct: 174 IKYRPLPLRTVELQKKCSSYFRLSGHKVMEVAEGLYNRGYISYPRTETDVFDKKFDFKYI 233
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ + G YA+RL +++ P +G ++D AH PI+P K G S +D +
Sbjct: 234 LNKLSKDSKVGEYAERL----GRVFKYPRNGKNNDMAHLPIYPLKEGVGLSGSDRD---I 286
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
Y+ + R FL C+S+ A G ET E+ + E F SG ++ KNYL+VY ++ W +
Sbjct: 287 YDFICRRFLGCISEDAKGLETRYELKVGMETFDLSGIRVVEKNYLEVYYYDKWDNKEVSD 346
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+V ++ + L + G T P LSEA+L+S MDK GIGTDAT+H+HI+K+ +R YAIK
Sbjct: 347 FVM-EEIVSGDLHISEGKTTAPKYLSEAELISLMDKNGIGTDATIHEHIQKIQERGYAIK 405
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
P +G AL+ GY+ G + KP+LR +E ++K +S G V+ +
Sbjct: 406 -VGEEIRPLGLGMALIDGYERFGLNVSKPSLRKNLEINLKRISHGEIDGRSVVYEGILAY 464
Query: 598 KACFLDARLKKVKLLEAMGIF 618
K ++ L K + E +GI
Sbjct: 465 KDIYV---LLKRNIKEFVGIL 482
>gi|303389042|ref|XP_003072754.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
gi|303301896|gb|ADM11394.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
Length = 622
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 188/473 (39%), Positives = 285/473 (60%), Gaps = 17/473 (3%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
+V+W DCDREGENI ++ ++ V + ++RARFS + R+I A+ NL + N+ A+
Sbjct: 2 VVIWTDCDREGENIGRQIRDIVLGVK-KVEVKRARFSGITLRDIEGALGNLGEINEAEAE 60
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AV+ R E+DLRIG++FTR QT+ L ++ + R VLS+GPCQ PTLGFVVER E
Sbjct: 61 AVEVRMELDLRIGSAFTRLQTLSLGR----TIQEKR--VLSFGPCQVPTLGFVVERARER 114
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
++ E FWT+ KS++ F+W RG +FD + VI + + +A + +E+
Sbjct: 115 ESFVPEMFWTLMFKTKSKKLGDEFTWRRGSVFD-KNCVICFHRSLSGESARIVLKEVRER 173
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
KY P PL T+EL+K+ S YF++S M++AE LY G+ISYPRTETD+F + I
Sbjct: 174 TKYKPLPLRTVELQKKCSSYFKLSGHKVMEIAEGLYNKGYISYPRTETDAFDRKFDFKYI 233
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ + G +A++L+ G + P +G ++D AH PI+P K +G S +D +
Sbjct: 234 LGKLCKDSKVGEHAEKLI----GGFDYPRNGRNNDMAHSPIYPLKEGTGLSGKDRD---I 286
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
Y+ + R FL C+S+ A G ET E+ I E+F G ++ KNYL+VY ++ W +
Sbjct: 287 YDFICRRFLGCISKDAKGLETRYELKIGSEMFDLKGIRVVEKNYLEVYYYDKWDDKEVSD 346
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ G + + L + G T PP L+EA+L+S MDK GIGTDAT+H+HI+K+ +R YAIK
Sbjct: 347 FQMG-EMVSGDLCISEGKTTPPNYLTEAELISLMDKNGIGTDATIHEHIQKIQERGYAIK 405
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
P +G AL+ GY+ G + KP LR +E ++K++S G S +V+
Sbjct: 406 -VGEEIRPLELGAALIGGYERFGLNVGKPELRKSLEGNLKKISEGRMSGREVV 457
>gi|449669651|ref|XP_002153907.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 818
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 212/566 (37%), Positives = 308/566 (54%), Gaps = 25/566 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A S++ ILS + ++G S I+EFN S G+ MTSV GH+M
Sbjct: 4 VLMVAEKPSLALSISKILSGGN-INTKKGVSSACPIHEFNGSFLGENIKFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDF + W + +P +L+ A +K ++K +I K L+ + +LVLWLDCD+EGE
Sbjct: 63 SLDFKGYFNNWDAVEPIELFSAATQKIEAQEKLNIVKHLKVAGKEVDFLVLWLDCDKEGE 122
Query: 130 NIAFEVIEVCRAV---NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
NI FEVI+ + + ++ RA FSA+ D++I A+ NL DPN+ + +VDARQE+D
Sbjct: 123 NICFEVIDCVKPFMKQSNKQMIYRAHFSAITDKDIKNAMHNLKDPNKNESLSVDARQELD 182
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+G +FTRFQT K F D +L+ SYGPCQ PTL F V R+ IQ+ + E +W
Sbjct: 183 LRVGCAFTRFQT---KYFQGKYGNLDSSLI-SYGPCQTPTLAFCVARHDIIQSFQPETYW 238
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I S K W R +FD A + + + ATV +++ EK K PP L+
Sbjct: 239 KIQASLKP---NIILDWERVRIFDREIANLFFNLVKGAKEATVVSIQEVEKKKAPPIALN 295
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL + AS + + TM +AE LY GFISYPRTET ++ +L G ++ Q G+
Sbjct: 296 TVELLRVASSGLGIGPQQTMHIAEKLYTQGFISYPRTETTNYPKSFDLIGPLKLQCGNRS 355
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+G Y +LL N G D HPPI P + +S + S D +K+Y+ +V+HF+
Sbjct: 356 FGEYVSQLLSKGI----NKPRKGLDAGDHPPITPMRLAS-PNDLSSDMWKVYDYIVKHFI 410
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTYVHGQ 482
+ VS + +I EVFS +G+ ++ + V W + +P++ Q
Sbjct: 411 STVSYECCYKVKTITFSINKEVFSCTGKTVIDPGFTYVM---DWQAIPKEESLPSFEINQ 467
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
L L +T PP L+E++L+S M+K GIGTDA++ HI + R Y +
Sbjct: 468 SLETKDLKLVECLTTPPDYLTESELISLMEKHGIGTDASISVHINNICQRNYVTVTTGRK 527
Query: 543 FAPTNIGEALVMGYDD--MGYELWKP 566
PT +G LV GY M Y KP
Sbjct: 528 LIPTPLGIVLVHGYHKLYMKYITTKP 553
>gi|327280846|ref|XP_003225162.1| PREDICTED: DNA topoisomerase 3-beta-1-like isoform 2 [Anolis
carolinensis]
Length = 851
Score = 352 bits (902), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 224/641 (34%), Positives = 337/641 (52%), Gaps = 35/641 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ + R+G + ++E+ S GQ H MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGN-MSSRKGLNGACSVHEYTGSFIGQSSHFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y W DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EG
Sbjct: 63 TLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEG 122
Query: 129 ENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ + V+ RA+FS++ D +I A+ +L +PN A +VDARQ
Sbjct: 123 ENICFEVLDAIVPIMNKPRGSERVVYRAKFSSITDTDICNAMNHLGEPNHNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E FQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 E-----------FQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 227
Query: 244 EFWTINCSHKSEEGTA-TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + E+ + T W R +FD A + + A V V ++EK K P
Sbjct: 228 MYWVLQAKVSHEKDSCLTLDWDRVRIFDREIAQLFLNITKAVKDAKVESVSRKEKSKQRP 287
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 288 LALNTVEMLRVASAALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLRQQA 347
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+P W + LL A G+ N GHD HPPI P + +S E+ D ++L+E +
Sbjct: 348 NNPYWAETVKALL--AEGI--NKPRKGHDAGDHPPITPMRAAS-EAELGGDGWRLFEYIT 402
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG-LVIPTYVHG 481
RHF+A VS +T + ++ E F+ G+ ++ + ++ ++S +P+ G
Sbjct: 403 RHFIATVSADCKYLQTTITCSVGTERFTCIGKTVILPGFTEIMPWQSIPPEESLPSCERG 462
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
F + + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y +
Sbjct: 463 DVFPVSEIKLLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENGR 522
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PTN+G LV GY + EL P +RS +E + ++ G + VL + L K F
Sbjct: 523 RLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKANYHQVLEHTLDIFKRKF 582
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ E M + F + A G+ + +CG C
Sbjct: 583 HYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 617
>gi|443731127|gb|ELU16364.1| hypothetical protein CAPTEDRAFT_182010 [Capitella teleta]
Length = 856
Score = 351 bits (901), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 223/643 (34%), Positives = 341/643 (53%), Gaps = 30/643 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFN--YSIRGQPCHMLMTSVTG 66
+ + VAEKPS+A+S+A ILS Q + R+G + I+EF + G+ TSV G
Sbjct: 3 SAIMVAEKPSLAQSLAKILSGGQ-MSSRKGSNGACSIHEFTGRFPPTGETVRFKFTSVCG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H++ LDF ++ W DP +L+ AP +K +K + + LE+EAR +LVLWLDCD+
Sbjct: 62 HVLSLDFLGKFNNWDRVDPVELFDAPTQKKETTEKLRMPQFLEKEARGADYLVLWLDCDK 121
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FEVI+ + + + + RA FSA+ D ++ +A L PN+ A +VDARQE+D
Sbjct: 122 EGENICFEVIDSVKH-SMNRSIFRAHFSAITDTDVKKAFNTLGVPNENEAMSVDARQELD 180
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTR+QT F D + ++SYGPCQ PTLGF V+R+ IQ+ + E FW
Sbjct: 181 LRIGCAFTRYQT----KFFQGKYGDLDSTLISYGPCQTPTLGFCVDRHDRIQSFKPETFW 236
Query: 247 TINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
I G + W R +FD A + M A + V+++EK K P L
Sbjct: 237 VIQMQVVHPSGKMMSLDWERVRIFDNEVARMFLSMIKANDKAVIVDVQKKEKSKARPMAL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+E+ + AS + M +AE LY G+ISYPRTET + +L G ++ Q +
Sbjct: 297 NTVEMLRTASSGLGIGPSTCMMIAERLYTQGYISYPRTETTHYPENFDLKGTLRIQQNNH 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG + LL+ + P G D HPPI P + S+ E+ D ++LY + RHF
Sbjct: 357 EWGAEVKALLNEGI---QKPKKGS-DAGDHPPITPMR-SATEAELGHDAWRLYSFITRHF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV----IPTYVHG 481
+ +S +T + + E FS +G+ +++ + V +W L +P G
Sbjct: 412 IGTISPDCKYLQTTISFKVGNEEFSCTGKTLISAGFTSVM---TWQALAADENLPKCTVG 468
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ + + L T PP L+EA+L++ M+K GIGTDA++ HI + +R Y A
Sbjct: 469 EKCEISNVKLAERQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICERNYVNVTATG 528
Query: 542 R-FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PT +G LV GY + +L KP +R+ +E + ++ G KAD A LQ
Sbjct: 529 RKLKPTTLGIVLVHGYVKIDADLIKPTMRAAVEQQLNLIAQG---KADFNA-VLQHAIDI 584
Query: 601 FLDARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGICQ 642
F V+ + +M FE +S D +G+ + +CG C+
Sbjct: 585 FKRKFKYFVENINSMDELFEVSFSPLAD---SGKPMSRCGKCR 624
>gi|313224215|emb|CBY32300.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 351 bits (901), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 230/675 (34%), Positives = 347/675 (51%), Gaps = 34/675 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYN-KIYEFNYSIRGQPCHMLMTSVTG 66
+NVL VAEKPS+A S+A ILS N+ + R ++ K++E+ +G+P +TSV G
Sbjct: 2 VNVLMVAEKPSLAHSIAEILS-NRSMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF+ ++ W DPA+L+ A K K ++K L+ E+ C LVLWLDCDR
Sbjct: 61 HVFSIDFEAQFNNWDKTDPAELFSAGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FEV+ + + V RRA FSA+ D++I +A+ NL PN+ + AVDARQE+D
Sbjct: 121 EGENICFEVMSCIPHIRGNNV-RRAHFSAITDKDIKKAMNNLGSPNKLESLAVDARQELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D N + SYGPCQ PTLGF VER+ +I + E+FW
Sbjct: 180 LRIGCAFTRFQTKFFQGQYGDL---DSNCI-SYGPCQTPTLGFCVERHDQITKFKPEKFW 235
Query: 247 TINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
++ + ++E G W RG +FD A +++ +A V V ++ K K P L
Sbjct: 236 RMSLAVQTENSGNLYADWQRGRIFDQGVANMLHGKIKNIKSAVVQSVSKKAKAKQRPVAL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL + S + M AE LY GFISYPRTET S+S + ++
Sbjct: 296 NTVELLRVCSAKLGIGPAQAMVSAERLYTQGFISYPRTETTSYSENFDFRPVISMLQHST 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
AQ L+ + NP G D HPPI P + S E+ + Y++Y V HF
Sbjct: 356 PHSIAAQELMKSSP----NP-RKGEDKGDHPPITPQRNCS-ETEVGGEAYRVYNYVASHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LA + + +T + + + EVF + K Y V+P G
Sbjct: 410 LASLMKDYKYEQTEITVKVGNEVFHLTANREKEKGYALALTNVGVEESVLPDVQKGSSLN 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
T+ L+ T PP L+E+DL++ M+K GIGTDA++ HI ++ R Y + + P
Sbjct: 470 VTSCQLEEKYTGPPDYLTESDLITLMEKHGIGTDASIPVHINNIVQRNYVQLVSGRKLEP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN---KSKADVLANCLQQMKACFL 602
T +G LV GY + +L KP +R+ +E + ++ G K D + N + + F+
Sbjct: 530 TELGVVLVHGYKKIDPDLVKPQMRASVEKQLDLIAAGKTEFKIMVDYVLNIMLRKFHYFV 589
Query: 603 DARLKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
D + ++++ M F S +AG+ +CG C N +K + + C
Sbjct: 590 D----HINMMDSLMETKFTSLS------SAGKPFSKCGKC---NRFMKLIEAKPVRLYC- 635
Query: 662 AFPQCRNAVWLPGSV 676
P C + LP +
Sbjct: 636 --PTCSDTYSLPSGL 648
>gi|324504807|gb|ADY42072.1| DNA topoisomerase 3-beta-1 [Ascaris suum]
Length = 858
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 217/647 (33%), Positives = 338/647 (52%), Gaps = 34/647 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
V+ VAEKP +A+S+A +LS + + R+GR+ + E++ G+ +TS GH+
Sbjct: 3 TVIMVAEKPMLAESIAKLLSNGKAQK-RKGRNGVCSVSEYDGEFMGRSVRFKVTSTCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF ++ W DP L+ AP K K + + L EAR C++LVLWLDCD+EG
Sbjct: 62 MSLDFLPKFNNWERTDPVQLFAAPTEKKEANPKLKMNEFLAFEARGCEYLVLWLDCDKEG 121
Query: 129 ENIAFEVIEVC-------RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
ENI FEVIE R+ N ++ RA FSA+ +++I A++NL+ PN+ + +VDA
Sbjct: 122 ENICFEVIEAVKRSLKAPRSGNLMDIVYRAHFSAITEKDIKGAMRNLIRPNENESLSVDA 181
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
RQE+DLRIG +FTRFQT + + D + +S+GPCQ PTLGF V R+ I +
Sbjct: 182 RQELDLRIGCAFTRFQTRYFQGKY----GDLDSTCISFGPCQTPTLGFCVTRHDLITQFK 237
Query: 242 SEEFWTINCSHKSEEGTATF-SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
E +W + ++++G + RG +FD + E +E V+ V +E K
Sbjct: 238 PEPYWLVQVVLETKDGKELRPEFSRGRIFDRDVCQLFLERVKKENIGMVSDVFTKEGRKD 297
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
P L+T+E+ + AS MS + M AE LY GFISYPRTET+++ +L G +++
Sbjct: 298 RPQALNTVEMMRVASSGLGMSPSNAMSTAEYLYTRGFISYPRTETNTYPVNFDLIGPLRQ 357
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
Q P WG +++L R GG D HPPI P + S + S D +LY+
Sbjct: 358 QQNDPRWGNIVKQVLSEGITKPR----GGEDKGDHPPITPMR--SDDGSLSGDALRLYQY 411
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYV 479
V +HF+A + +P T +I EVF+ SG+ +L + + +++ G +P
Sbjct: 412 VTQHFIATLMRPCTYLVTTAKICFGEEVFTISGKRLLDAGFTSILTWQAIGEDTELPELR 471
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G + T P L+E++L+S M+K GIGTDA++ HI + R Y ++
Sbjct: 472 RGDFLSLKDARIVERATTAPDHLTESELISLMEKHGIGTDASIPVHINTICQRNYVTVES 531
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
R PT +G ALV GY + EL P +R+ +E+ + ++ G AN
Sbjct: 532 GRRLVPTKLGIALVHGYWKIDPELVLPTMRAEVEAQLNLIAKGQ-------ANFFAVKNH 584
Query: 600 CFLDARLKKVKLLEAM----GIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ RLK + +E + +F + ++ D G+ +CG C+
Sbjct: 585 ALDNFRLKFIYFVENILSVDSLFEDSFTTLAD---TGKPFSRCGKCR 628
>gi|428178584|gb|EKX47459.1| hypothetical protein GUITHDRAFT_69656 [Guillardia theta CCMP2712]
Length = 807
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 222/653 (33%), Positives = 335/653 (51%), Gaps = 41/653 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ V+ VAEKPS+ ++A LS E + ++ F + G +TSV GH
Sbjct: 2 VTVVMVAEKPSICNAIAIALSGGN----HETKGGTPPVHTFRSNFMGSSALFKVTSVVGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ DF Y+ W DP L+ APV K +KK + L+ E + +LVLWLDCDRE
Sbjct: 58 VFSTDFPSAYQSWDKVDPVTLFDAPVEKKA--EKKGVVHLLQNEGKGADYLVLWLDCDRE 115
Query: 128 GENIAFEVIEVC----------RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
GENI FEVI R + RA+FSA+ +I A+ L PN+ +
Sbjct: 116 GENICFEVISCIMPEALSRKELRTPGPKQRIFRAKFSAINPNDIKNAMMTLGAPNENESL 175
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
+V+ARQE+DL++G +F+R+QT + + D D R ++SYGPCQ PTLGF VER+ I
Sbjct: 176 SVEARQELDLKVGVAFSRYQTRYFQGKYSD--LDSR--IVSYGPCQTPTLGFCVERHILI 231
Query: 238 QAHESEEFWTINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
Q E +W + + K E G F W RG +FD A + + +++ + +V Q+E
Sbjct: 232 QNFVPEPYWVLCPTIKIEGYGAVKFEWERGRIFDKRVASVFRSIMLEDSRLKILRVNQKE 291
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K P PL+T+ + K S+ + M AE+LY G+ISYPRTE+ ++ N+
Sbjct: 292 VKKGRPTPLNTVAMLKACSKALGIGPASAMHTAENLYLQGYISYPRTESTAYPKSMNIEE 351
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
+++ H WG + LL W P S G D HPPI P + + S D +
Sbjct: 352 TLRQFSRHAIWGGFVDDLLPRN---WVTPKS-GVDVGDHPPITPCRLAQ-PGDLSSDQGR 406
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF-------ES 469
+Y+L+ +HF+A VS AV +T +E I E F+TSGR + +L +Y+ E+
Sbjct: 407 VYDLIAKHFIATVSPDAVYLQTKIEAQIGTENFTTSGRQLKRPGWLGLYQMRSEYEDEEN 466
Query: 470 WGGLVIPTYVHGQQFIPT--TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
+ +P++ G+ F T TL + T PP L+E++L++ M+K GIGTDA+M HI+
Sbjct: 467 YEIRNLPSFKGGETFQMTSETLPMVEKKTSPPGYLTESELIALMEKNGIGTDASMATHIE 526
Query: 528 KLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKA 587
+ R Y ++ R PT +G LV GY + +L P +RS +E ++ G K
Sbjct: 527 NICQRNYVNVESGRRLVPTQLGTVLVQGYYRIDADLVLPIVRSNIEKQCDLIAKGMADKD 586
Query: 588 DVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGI 640
DV+A+ L + F VK +E M FE + A G+ +CG+
Sbjct: 587 DVVAHSLSNFQKKF----SYFVKNIEMMDTLFE--ASFSPLTAGGKPWSKCGL 633
>gi|313229708|emb|CBY18523.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 230/675 (34%), Positives = 346/675 (51%), Gaps = 34/675 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYN-KIYEFNYSIRGQPCHMLMTSVTG 66
+NVL VAEKPS+A S+A ILS N+ + R ++ K++E+ +G+P +TSV G
Sbjct: 2 VNVLMVAEKPSLAHSIAEILS-NRSMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF+ ++ W DPA+L+ A K K ++K L+ E+ C LVLWLDCDR
Sbjct: 61 HVFSIDFEAQFNNWDKTDPAELFSAGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FEV+ + + V RRA FSA+ D++I +A+ NL PN+ + AVDARQE+D
Sbjct: 121 EGENICFEVMSCIPHIRGNNV-RRAHFSAITDKDIKKAMANLGSPNKLESLAVDARQELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D N + SYGPCQ PTLGF VER+ +I + E+FW
Sbjct: 180 LRIGCAFTRFQTKFFQGQYGDL---DSNCI-SYGPCQTPTLGFCVERHDQITKFKPEKFW 235
Query: 247 TINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
++ + ++E G W RG +FD A +++ +A V V ++ K K P L
Sbjct: 236 RMSLAVQTENSGNLYADWQRGRIFDQGVANMLHGKIKNIKSAVVQSVSKKAKAKQRPVAL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL + S + M AE LY GFISYPRTET S+S + ++
Sbjct: 296 NTVELLRVCSAKLGIGPAQAMVSAERLYTQGFISYPRTETTSYSENFDFRPVISMLQHST 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
AQ L+ + NP G D HPPI P + S E+ + Y++Y V HF
Sbjct: 356 PHSIAAQELMKSSP----NP-RKGEDKGDHPPITPQRNCS-ETEVGGEAYRVYNYVASHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LA + + +T + I + EVF + K Y V+P G
Sbjct: 410 LASLMKDYKYEQTEITIKVGNEVFHLTANREKEKGYALALTNVGVEESVLPDVQKGSSLN 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ L+ T PP L+E+DL++ M+K GIGTDA++ HI ++ R Y + + P
Sbjct: 470 VASCQLEEKYTGPPDYLTESDLITLMEKHGIGTDASIPVHINNIVQRNYVQLVSGRKLEP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN---KSKADVLANCLQQMKACFL 602
T +G LV GY + +L KP +R+ +E + ++ G K D + N + + F+
Sbjct: 530 TELGVVLVHGYKKIDPDLVKPQMRASVEKQLDLIAAGKTEFKIMVDYVLNIMLRKFHYFV 589
Query: 603 DARLKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
D + ++++ M F S +AG+ +CG C N +K + + C
Sbjct: 590 D----HINMMDSLMETKFTSLS------SAGKPFSKCGKC---NRFMKLIEAKPVRLYC- 635
Query: 662 AFPQCRNAVWLPGSV 676
P C + LP +
Sbjct: 636 --PTCSDTYSLPSGL 648
>gi|341892314|gb|EGT48249.1| hypothetical protein CAEBREN_32330 [Caenorhabditis brenneri]
Length = 1276
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 235/680 (34%), Positives = 351/680 (51%), Gaps = 41/680 (6%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKP +A S+A +LS Q R R+G + + E++ G+ +TS GH+
Sbjct: 548 TVLMVAEKPMLADSIAQLLSNGQA-RKRKGWNNVCSVSEYDGQFNGRNAKFKVTSTCGHV 606
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF ++ W DPA+LY AP K K + L EA+ +LVLWLDCD+EG
Sbjct: 607 MSLDFPAKFNNWERVDPAELYSAPAVKIEANPKMKMNDFLASEAKTADYLVLWLDCDKEG 666
Query: 129 ENIAFEVIEVCRAVNCHLV---------LRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
ENI FEV V AV + + RA FSA+ +++I A+++L P+Q A +V
Sbjct: 667 ENICFEV--VIDAVKSAMFKNRPDFMNDVYRAHFSAITEKDIKAAMKSLGRPDQNMALSV 724
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
DARQE+DLRIG SFTRFQT + + D D N V+SYGPCQ PTLGF V R+ +I
Sbjct: 725 DARQELDLRIGCSFTRFQTKFFQGKYGDL---DSN-VISYGPCQTPTLGFCVTRHDQIVQ 780
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+ E +W + + + T + W RG +FD A + + + + VT V ++E K
Sbjct: 781 FKPEAYWVLKTTFSCDSQTFSPEWQRGRIFDAEIARLFVDRIKKSHSGVVTDVSKKEARK 840
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
P L+T+EL + AS MS TM VAE LY G+ISYPRTET ++ + +L+G ++
Sbjct: 841 ERPCALNTVELMRVASSSLGMSPSTTMHVAESLYTQGYISYPRTETTAYPANFDLNGTLK 900
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
G WG ++L A G+ R P SG D HPPI P + ++G S D ++YE
Sbjct: 901 ILSGDRKWGSVVSQVL--AEGIKR-PKSGV-DKGDHPPITPMRANTG--GLSGDMARIYE 954
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTY 478
V +HF+A + + V T V++ E F+ G+ ++ + V + S +P
Sbjct: 955 YVSQHFVATLMKQCVYEVTTVKMACGDEQFTIQGKNVIDPGFTAVMPWLSVEDECSVPKS 1014
Query: 479 VH--GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
+ G + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 1015 LQQVGAKIELQDAQILARETTPPGYLTEAELITLMEKHGIGTDASIPVHINTITQRNYVT 1074
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ- 595
++ R PT +G+ LV GY + EL P +R+ +E + V+ G DV + L+
Sbjct: 1075 VESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQLNLVASGKADYHDVKNHALKM 1134
Query: 596 -QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDG 654
+MK F V + A+ FE + G+ +CG C+ M L +++
Sbjct: 1135 FEMKFQFF------VNNIPAVDTLFE--ASFTTLSDTGKPFSRCGKCRRY-MKLVQTKPQ 1185
Query: 655 NLMVGCLAFPQCRNAVWLPG 674
L P C+ +P
Sbjct: 1186 RLFC-----PTCQETYSVPN 1200
>gi|313239950|emb|CBY32313.1| unnamed protein product [Oikopleura dioica]
Length = 856
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 229/675 (33%), Positives = 347/675 (51%), Gaps = 34/675 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYN-KIYEFNYSIRGQPCHMLMTSVTG 66
+NVL VAEKPS+A S+A ILS N+ + R ++ K++E+ +G+P +TSV G
Sbjct: 2 VNVLMVAEKPSLAHSIAEILS-NRSMATRPAKTGGPCKVHEYKGQYKGKPATFKVTSVCG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ +DF+ ++ W DPA+L+ A K K ++K L+ E+ C LVLWLDCDR
Sbjct: 61 HVFSIDFEAQFNNWDKTDPAELFSAGTVKDEANPKMHMRKHLKTESASCDELVLWLDCDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FEV+ + + V RRA FSA+ D++I +A+ NL PN+ + AVDARQE+D
Sbjct: 121 EGENICFEVMSCIPHIRGNNV-RRAHFSAITDKDIKKAMANLGSPNKLESLAVDARQELD 179
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D N + SYGPCQ PTLGF VER+ +I + E+FW
Sbjct: 180 LRIGCAFTRFQTKFFQGQYGDL---DSNCI-SYGPCQTPTLGFCVERHDQITKFKPEKFW 235
Query: 247 TINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
++ + ++E G W RG +FD A +++ +A V V ++ K K P L
Sbjct: 236 RMSLAVQTENSGNLYADWQRGRIFDQGVANMLHGKIKNIKSAVVQSVSKKAKAKQRPVAL 295
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+EL + S + M AE LY G+ISYPRTET S+S + ++
Sbjct: 296 NTVELLRVCSAKLGIGPAQAMVSAERLYTQGYISYPRTETTSYSENFDFRPVISMLQHST 355
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
AQ L+ + NP G D HPPI P + S E+ + Y++Y V HF
Sbjct: 356 PHSIAAQELMKSSP----NP-RKGEDKGDHPPITPQRNCS-ETEVGGEAYRVYYYVASHF 409
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LA + + +T + + + EVF + K Y V+P G
Sbjct: 410 LASLMKDYKYEQTEITVKVGNEVFHLTANREKEKGYALALTNVGVEESVLPDVQKGSSLN 469
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
T+ L+ T PP L+E+DL++ M+K GIGTDA++ HI ++ R Y + + P
Sbjct: 470 VTSCQLEEKYTGPPDYLTESDLITLMEKHGIGTDASIPVHINNIVQRNYVQLVSGRKLEP 529
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN---KSKADVLANCLQQMKACFL 602
T +G LV GY + +L KP +R+ +E + ++ G K D + N + + F+
Sbjct: 530 TELGVVLVHGYKKIDPDLVKPQMRASVEKQLDLIAAGKTEFKIMVDYVLNIMLRKFHYFV 589
Query: 603 DARLKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
D + ++++ M F S +AG+ +CG C N +K + + C
Sbjct: 590 D----HINMMDSLMETKFTSLS------SAGKPFSKCGKC---NRFMKLIEAKPVRLYC- 635
Query: 662 AFPQCRNAVWLPGSV 676
P C + LP +
Sbjct: 636 --PTCSDTYSLPSGL 648
>gi|198435562|ref|XP_002121520.1| PREDICTED: similar to topoisomerase (DNA) III beta, partial [Ciona
intestinalis]
Length = 827
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 208/608 (34%), Positives = 319/608 (52%), Gaps = 27/608 (4%)
Query: 45 IYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDI 104
++EF +G+ +TSV GH+M +DF+ +Y W DP +L+ AP K K +I
Sbjct: 11 VHEFTGKFKGETVRFKVTSVCGHVMSIDFEGKYNNWEKVDPGELFSAPTIKKEANPKLNI 70
Query: 105 KKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC-----RAVNCHLVLRRARFSALIDR 159
K LE+EAR ++VLWLDCDREGENI FEV+++ R+ N V+ RA FSA+ D+
Sbjct: 71 IKFLEKEARDADYIVLWLDCDREGENICFEVLDIVLPVMRRSGNRQDVVFRAHFSAITDK 130
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSY 219
+I+ A+ ++ PN+ + VDARQ++DLR+G +FTRFQT + + D D +L+ SY
Sbjct: 131 DINAALNSVGKPNENESQCVDARQDLDLRLGCAFTRFQTKYFQGKYGDL---DSSLI-SY 186
Query: 220 GPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG--TATFSWMRGHLFDYTSAVII 277
GPCQ PTLGF V+R+ +IQ+ + E FW I+ S K + T W RG +F+ A +
Sbjct: 187 GPCQTPTLGFCVDRHDKIQSFKPEPFWMIDVSVKCPNNGPSITLEWARGRIFEQPVAKMY 246
Query: 278 YEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 337
+ + A + + ++EK K P L+T+E+ + AS + + M+ AE LY G+
Sbjct: 247 LSIIKENKIAVIENILKKEKTKQRPQALNTVEMLRVASASLGIGPQQAMQSAEHLYTRGY 306
Query: 338 ISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPP 397
ISYPRTET + + + +Q WG A LL R G D HPP
Sbjct: 307 ISYPRTETTHYPENFDFRSSLSQQTKSRSWGDSASTLLSQGITKPRK----GSDAGDHPP 362
Query: 398 IHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL 457
I P + E D+++LYE +VRHF+A +S T++ +A E FS +G L
Sbjct: 363 ITPM-LCATEQEVGHDNWRLYEYIVRHFIASLSPDCTYLHTVINFKLAEESFSCTGNSPL 421
Query: 458 AKNYLDVYRFESWGG-LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
+ +V + S +PT G + L T PP L+E++L+ M+K GI
Sbjct: 422 KPGFTEVMPWHSINDQQTLPTLTEGGKCEVEKTNLLERKTSPPDYLTESELIMLMEKHGI 481
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDM 576
GTDA++ HI + R Y + + PTN+G LV GY + +L P +RS +E +
Sbjct: 482 GTDASIPTHINNIGQRNYVTVISGRKLQPTNLGIMLVHGYKKIDPDLALPTMRSAVEKQL 541
Query: 577 KEVSVGNKSKADVLANCLQ--QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEV 634
+++G DVL + + Q K + A + + L + F S +G+
Sbjct: 542 NLIALGKAKYTDVLKHAVTIFQQKFHYFVAHVTSMDSL--FEVTFTPLS------ESGKP 593
Query: 635 VRQCGICQ 642
+ +CG C+
Sbjct: 594 MSRCGKCR 601
>gi|238578791|ref|XP_002388836.1| hypothetical protein MPER_12103 [Moniliophthora perniciosa FA553]
gi|215450488|gb|EEB89766.1| hypothetical protein MPER_12103 [Moniliophthora perniciosa FA553]
Length = 421
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 181/438 (41%), Positives = 272/438 (62%), Gaps = 21/438 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+AKS+ ILS + + R +Y K Y+F+Y H +T+V GH
Sbjct: 1 MRVLCVAEKPSIAKSITQILSGGR-FQTRNTAVKYIKDYDFDYP--QTRSHFTVTAVAGH 57
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L ELDF + +RKW SCDP DL+ AP V +D K +++ + EA++ L++W DCDRE
Sbjct: 58 LTELDFTDTHRKWGSCDPFDLFDAPTVSRVKDDNKGMERNIFNEAKQAATLMIWTDCDRE 117
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I E+ +V + N +++++RARF+A++ ++IH A Q+ VD + DAV++R IDL
Sbjct: 118 GEHIGSEIAKVAKRANRNIIVKRARFNAIVAQQIHHAAQHPVDLDIRLVDAVESRIVIDL 177
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
+IG++FTR+QT +KN ++D + SYGPCQFP LGFVV R+ ++Q + FW
Sbjct: 178 KIGSAFTRYQTTNIKNRL--GLSDG---LYSYGPCQFPCLGFVVARFKDVQNFRPDPFWY 232
Query: 248 INCSHKSEEGTAT-FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I + + + T F+W R +F A++IYE + P A V KV ++E K+ P PL+
Sbjct: 233 IYLAVTTADDQETPFNWKRDRIFSEDEALVIYEHVMTNPLARVIKVEKKETKKWKPLPLT 292
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+E++K SR +++ + + +AE LYQ GF+SYPRTETD F S + ++++Q P
Sbjct: 293 TVEMQKAGSRLLKLAPKKILDIAEKLYQQGFLSYPRTETDQFDSQFDFQSLIEKQRADPS 352
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS---GESRWSQDHYKLYELVVR 423
WG +A L + G + P G ++DKAHPPIHPT ++ GE + ++YE + R
Sbjct: 353 WGAFATSLQE---GGFSAPRKGKNNDKAHPPIHPTAYAGNLHGEEK------RVYEYITR 403
Query: 424 HFLACVSQPAVGAETIVE 441
FLAC S A G +TIVE
Sbjct: 404 RFLACCSTDAKGWQTIVE 421
>gi|449016179|dbj|BAM79581.1| DNA topoisomerase III alpha [Cyanidioschyzon merolae strain 10D]
Length = 784
Score = 348 bits (894), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 247/753 (32%), Positives = 354/753 (47%), Gaps = 143/753 (18%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNK------IYEFNYS--IRGQPCHM 59
+ L+VAEKPSVA+ A +L + R + S Y+ ++EF+ R
Sbjct: 1 MKALHVAEKPSVARQAAAVLGHGRAER-KCSCSPYHPNWFWSGVFEFSAKDGTRFVVDEQ 59
Query: 60 LMTSVTGHLMELDFDERYRKWHSCDPADLYH---APVRKHVPEDKKDIKKTLEEEARRCQ 116
+ TSV+GH+ ELDF Y KW +C+P D++ R+ VPE + + L + AR CQ
Sbjct: 60 VFTSVSGHVEELDFVTPYHKWSACEPVDIFRRDLVQTRRFVPERNAKVAQNLGQLARTCQ 119
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
+LVLWLD D EGE I+ EV +C+ + RARFSA+ R++ +A L N
Sbjct: 120 YLVLWLDGDSEGEAISDEVQRICKLPPSMVF--RARFSAVTPRDLFRACATLDRVNAKVV 177
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDS---------------------------- 208
+AV RQEIDLR GA+FTR+ T ++ + +
Sbjct: 178 EAVWIRQEIDLRAGAAFTRWLTRHIQRHYPQALICTSAIVASRRKGASGTSNLGRNERLQ 237
Query: 209 ---VTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTAT----- 260
V+ V+SYGPCQFPTLG VV+RY E + +++ FWTI ++ A+
Sbjct: 238 GSGVSSADAAVVSYGPCQFPTLGLVVDRYRERREFQTKPFWTIRMRIQTTGDRASGNQVE 297
Query: 261 FSWMRGHLFDYTSAVIIYEM---CVQEPTAT-VTKVRQQEKLKYPPYPLSTIELEKRASR 316
W R +FD A ++++ V+ P A + +Q + P PLST+EL+K ASR
Sbjct: 298 LCWDRARIFDRFIAYVLFQRLHDAVRLPGALRMIACEKQPAHRSRPLPLSTVELQKEASR 357
Query: 317 YFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSG----TNLHGIVQEQIGHPDWGPYAQ 372
++SS TM++AE LYQ G+ISYPRTETD F + +NL ++ Q W A+
Sbjct: 358 KLKLSSAQTMEIAEQLYQQGYISYPRTETDRFPTDDRGISNLKALITLQSEDQRWSLLAK 417
Query: 373 RLL---DHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
RLL D + G ++ P +G HDD AHPPIHPT ++ S D +LYE + R FLA
Sbjct: 418 RLLETDDVSRGGFKAPRAGSHDDHAHPPIHPTS-AAPPGTLSGDAARLYEYIARRFLASC 476
Query: 430 SQPAVGAETI----------------------VEINIAGEVFSTSGRVILAKNYLDVYR- 466
S A G TI N E F++ G I YL+V+
Sbjct: 477 SADASGERTIWRFAVFSGASEARTEAPQETCMFPANTVLETFTSKGLRITNLGYLEVFSP 536
Query: 467 FESWGGLVIPTYVH-----GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDAT 521
+E W +P + + F T L L+ +T PP LLSEADL++ MD+ GIGTDAT
Sbjct: 537 YEKWLESTLPGDLECGAAAPEHFWLTELRLEESITEPPALLSEADLIAAMDRHGIGTDAT 596
Query: 522 MHDHIKKLLDRFYAIKD---------------------ANT------------------- 541
+ +HIKK+ +R Y +K AN+
Sbjct: 597 IAEHIKKIQERHYVVKQIIAEERRRQSHRAGTQVHDAAANSSDECDASQVTSRAHSATRT 656
Query: 542 -------------RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKAD 588
RF P +G+ALV ++ L +PNLR+ E K V+ G S ++
Sbjct: 657 RERCGLVSRSSVQRFVPMKLGQALVEAFESCHVHLARPNLRAEQERRQKLVAKGEASGSE 716
Query: 589 VLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
L L F L++ K FF +
Sbjct: 717 ALDELLTSFAEAFRRLVLERSKFDATFCKFFPK 749
>gi|323456344|gb|EGB12211.1| hypothetical protein AURANDRAFT_19616, partial [Aureococcus
anophagefferens]
Length = 696
Score = 348 bits (892), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 239/695 (34%), Positives = 357/695 (51%), Gaps = 47/695 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
V+ VAEKPS+A ++A L+K+ + R G R +EF G C +TSV GH
Sbjct: 4 VMCVAEKPSIADAIAKALAKST-VSTRGGSPR---THEFRGRFGGASCEYRVTSVLGHCF 59
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDF YR W CDP++L+ APV + VP + + + L E A+ C LVL+LDCDREGE
Sbjct: 60 NLDFAPAYRDWDGCDPSELWDAPVVR-VPSNGS-VLRNLRETAKDCDALVLFLDCDREGE 117
Query: 130 NIAFEVIEVCRA-VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
IAF+V++V ++ + + RA+FSA+ +I +A+ L +P++ ++AV ARQE+DLR
Sbjct: 118 AIAFQVMDVTQSELRPGATVHRAKFSAVTPADIEKAMATLGEPDERLSEAVIARQELDLR 177
Query: 189 IGASFTRFQTMLLKNFH--IDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
+G +FTRF T ++ + +D+ T LSYGPCQ PTLGFVV R EI E E +W
Sbjct: 178 VGVAFTRFTTRHFQSKYAGLDART------LSYGPCQTPTLGFVVRREDEIATFEPEPYW 231
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + + + A +W RG FD + A + ATV + K PP P +
Sbjct: 232 FPDAALEVDGAFADATWARGRCFDRSVAAALCRGAAAAGVATVVESTAGTSTKAPPLPFN 291
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T++L K ASR R+S MK AE LY GF+SYPRTET+ F +L +++Q G
Sbjct: 292 TVDLLKAASRVLRLSPAMAMKHAEHLYLDGFLSYPRTETNKFPPSMDLRAAIEQQAGDAR 351
Query: 367 WGPYAQRLLDHAAGLWRNP----GSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
WG +A LL+ +A WR P +G H P +G++ LY+LV
Sbjct: 352 WGAHAADLLERSA--WRRPKRGLDAGDHPPITPTAPAPPGVLNGKA------AALYDLVT 403
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY---- 478
R FLA VS+ A A+ V +++AGE F R ++A +LDV R P +
Sbjct: 404 RRFLASVSEDAAYADQRVAVDLAGERFVVERRALVAPGFLDVLRPHRDDDAGPPLFLELP 463
Query: 479 -VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
V + TRPP LSEAD ++ M+K GIGTDA++ HI+ + R Y
Sbjct: 464 AVGARPRAKCAAAPREATTRPPERLSEADCVALMEKHGIGTDASIPSHIENVCKRLYVAV 523
Query: 538 DANT-RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
D + R PT +G + G+ + L P +R+ +E+ ++ G + V+A+C+
Sbjct: 524 DGKSRRLRPTELGTVVCRGFLRVDASLVLPEVRAAIEAACDLIAGGEAPREAVVAHCVAN 583
Query: 597 MKACFLDARLKKVKLLEAMGIFFER-WSGGEDQQAAGEVVRQCGICQES-NMVLKKSRDG 654
A + A L ++AM F+ ++ + A+ +CG+ ++V + R
Sbjct: 584 FAAKY--AHL--AAHVDAMEQLFDAVYAERPEDDASRSAFSRCGLTGHYLHLVPRPQR-- 637
Query: 655 NLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
L P ++ V LP S AA C +C
Sbjct: 638 ------LYDPATKDVVDLPRPGSVAASNGRRCPAC 666
>gi|268532954|ref|XP_002631605.1| Hypothetical protein CBG20786 [Caenorhabditis briggsae]
Length = 591
Score = 346 bits (887), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 215/606 (35%), Positives = 321/606 (52%), Gaps = 30/606 (4%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKP +A S+A +LS Q R R+G + + E++ G+ +TS GH+M
Sbjct: 1 LMVAEKPMLADSIANLLSNGQA-RKRKGWNGVCSVSEYDGQFNGRNAKFKVTSTCGHVMS 59
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF +Y W DPA+LY AP K K + + L EA+ LVLWLDCD+EGEN
Sbjct: 60 LDFPSKYNNWERVDPAELYSAPAVKIEANAKMKMNEFLASEAKTADILVLWLDCDKEGEN 119
Query: 131 IAFEVIEVCRAVNCHLVLR--------RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
I FEV +N R RA FSA+ ++++ A++NL P+Q A +VDAR
Sbjct: 120 ICFEV-----GLNPMFKNRPDFMSDVYRAHFSAITEKDLKAAMKNLGRPDQNMALSVDAR 174
Query: 183 QEIDLRIGASFTRFQTMLLKNFHID-SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
QE+DLRIG SFTRFQT I + ++ V+SYGPCQ PTLGF V R+ +I +
Sbjct: 175 QELDLRIGCSFTRFQTKFNCKSSIKWASKKTKSTVISYGPCQTPTLGFCVTRHDQIVQFK 234
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + + T + W RG +FD A + + + T V V ++E K
Sbjct: 235 PESYWVLKTTFSCDSQTFSPEWQRGRIFDAEIAKLFVDRIKKSHTGVVVDVSKKEARKER 294
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+EL + AS +S TM VAE LY G+ISYPRTET ++ + +L+G ++
Sbjct: 295 PCALNTVELMRVASSSLGLSPSTTMHVAESLYTQGYISYPRTETTAYPANFDLNGTLKIL 354
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
G WG ++L A G+ R P S G D HPPI P + ++G S D ++YE V
Sbjct: 355 SGDRKWGSVVSQVL--AEGIKR-PKS-GVDKGDHPPITPMRANTGG--LSGDMARIYEYV 408
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPT 477
+HF+A + +P + T V++ E F+ G+ ++ + + W G+ +P
Sbjct: 409 SQHFVATLMKPCIYEVTTVKMMCGEEQFTIQGKNVVDPGFTAIM---PWLGVEEECSVPK 465
Query: 478 YVH--GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
+ G + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 466 SLQQVGAKIELQDAQIQARETTPPGYLTEAELITLMEKHGIGTDASIPVHINTITQRNYV 525
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
++ R PT +G+ LV GY + EL P +R+ +E + V+ G DV + L+
Sbjct: 526 TVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQLNLVASGKADYHDVKNHALK 585
Query: 596 QMKACF 601
+ F
Sbjct: 586 MFEMKF 591
>gi|219111227|ref|XP_002177365.1| DNA topoisomerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411900|gb|EEC51828.1| DNA topoisomerase, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 868
Score = 345 bits (886), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 225/656 (34%), Positives = 351/656 (53%), Gaps = 41/656 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREG-RSRYNKIYEFNYSI------RGQPCHML 60
I +L+VAEKPS+A+++A L+ +G RS+ +YE + I +
Sbjct: 1 ITILHVAEKPSIAQAIAHGLASAEGKSSNPSMRSKSLPVYELSNGISFPKAPHAKHFQHK 60
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAP-VRKHVPEDKKDIKKTLEEEARRCQWLV 119
+TSV GH+ +DF E+Y+ W S DPA+L+ AP VRK K + + LE+EAR ++V
Sbjct: 61 ITSVAGHVFNVDFPEKYQSWDSVDPAELFEAPIVRKPC---KSSVVRHLEDEARGVHFIV 117
Query: 120 LWLDCDREGENIAFEVIEVCRAV-------NCHLVLRRARFSALIDREIHQAVQNLVDPN 172
LW+DCDREGENI FEV++ C V N V R A FSA+ +I +A +L P+
Sbjct: 118 LWMDCDREGENINFEVLDCCMHVMKSGGSSNFDRVYR-AYFSAINPSDIQKAYNSLGKPD 176
Query: 173 QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
+ A +VDARQE+DL++G +F+R+QT + + D + VLSYGPCQ PTLGF V+
Sbjct: 177 KNQALSVDARQELDLKVGIAFSRYQTRYFQGRY----GDLNSAVLSYGPCQTPTLGFCVQ 232
Query: 233 RYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSA-VIIYEMCVQEPTATVTK 291
RY +IQ + E +W + + + W G F+ ++ E P A VT
Sbjct: 233 RYIDIQTFKPEPYWVLELAVMKRGRSLRALWGSGRSFNKNKVEKLLLEALESGPFAKVTS 292
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSG 351
V ++K + P PL+T+ L K S+ + T++ AE LY +G++SYPRTE+ ++
Sbjct: 293 VVAKDKKQGRPIPLNTVALLKACSKALGIGPHATLQTAERLYLSGYLSYPRTESSAYPKS 352
Query: 352 TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFS-SGESRW 410
+++G +Q+Q WG Y + LL N GG D HPPI P + + +GE
Sbjct: 353 FDIYGTLQQQSSDVRWGSYVRELLREGP----NKSRGGIDMGDHPPITPCRATRAGE--L 406
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA--GE--VFSTSGRVILAKNYLDVYR 466
S D ++Y+LVVRHF+A VSQ AV T ++ I GE VF+ G+ ++ +L V
Sbjct: 407 SGDMARVYDLVVRHFIASVSQDAVWRSTQIDFAIEALGEKGVFTLRGKEPVSPGFLAVLL 466
Query: 467 FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHI 526
+G I V + L + +T PP L+E++L+S M+K GIGTDA++ HI
Sbjct: 467 HTEYGEENIEVSVVPGTTVRANLGIKEKMTTPPTYLTESELISLMEKNGIGTDASISTHI 526
Query: 527 KKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+ + R Y ++ R P+ +G L GY + L P +RS +E + +++ G SK
Sbjct: 527 ENVQKRNYVALESGRRLVPSKLGIVLAQGYHQIDSSLVLPRVRSDIEDECNKIAKGLLSK 586
Query: 587 ADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
V+ + + F D+ + + ++ + F +S ED G+ +CG+ +
Sbjct: 587 DIVVQKAIDLFRNKF-DSFVNNISKMDVL--FSTSFSKLED---VGKPFTRCGLTR 636
>gi|340372491|ref|XP_003384777.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Amphimedon
queenslandica]
Length = 849
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 222/650 (34%), Positives = 339/650 (52%), Gaps = 32/650 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI-------RGQPCHML 60
+ VL VAEKPS+AKS++ ILS+ R + S + ++EF + G
Sbjct: 1 MRVLMVAEKPSLAKSLSEILSRGSSSRRKSSCSACD-VHEFQGKLAVPGGGGPGLAAMFK 59
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV GH+M LDF +Y W + DP LY A K I L +E + +LVL
Sbjct: 60 MTSVCGHVMSLDFQPKYNNWETTDPLLLYDAETMKKEAIPSLRIPSFLRQEGKGVDYLVL 119
Query: 121 WLDCDREGENIAFEVIEVCRAVNC------HLVLRRARFSALIDREIHQAVQNLVDPNQW 174
WLDCD+EGENI +EVI V + RA+FSA+ + I A NL PN
Sbjct: 120 WLDCDKEGENICYEVINEVEPVMKPPKTPRTQTIFRAKFSAVTEAAILHAFNNLGFPNWN 179
Query: 175 FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
+ +VDARQE+DLR+G SFTRFQT L ++ + + N V+SYGPCQ PTLGF VER+
Sbjct: 180 ESRSVDARQELDLRVGCSFTRFQTKLFQSLY----SGLNNSVISYGPCQTPTLGFCVERH 235
Query: 235 WEIQAHESEEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVR 293
EIQ + E++W ++CS S + W + +FD+ + + M A+V V
Sbjct: 236 DEIQHFKPEKYWKLDCSVSHSSSNPLSLQWDKERIFDHEVIKLFHLMLTHHKIASVESVS 295
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
++ + K PP PL T+E+ + S +S + M +AE LY G+ISYPRTET + +G +
Sbjct: 296 EKSRSKAPPLPLHTVEMLRACSSRLHISPKQAMDIAERLYTEGYISYPRTETTKYPAGFD 355
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQD 413
IV + + + + +LL G+ P S G D HPPI P + + E+ S
Sbjct: 356 FKSIVSDLNKNEHFKEFTSQLL--TGGI--RPPSVGKDVGDHPPITPLRNAPREAV-SDT 410
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL 473
+K+YE++ HFLA + +T V ++ GE FS +G ++ + + +++ G +
Sbjct: 411 QWKVYEMITCHFLATLFPDCKYKQTDVVFSLGGESFSWAGHTLIDPGFTLINTWQAIGSV 470
Query: 474 VIPT--YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
T + GQ++ L + +T PP L+E++L+S M+K IGTDA++ HI+ +
Sbjct: 471 PQTTAQFCKGQKWDIVQLGVSEHMTTPPGYLTESELISLMEKHAIGTDASIPVHIENICT 530
Query: 532 RFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
R Y + + R PT +G LV GY + EL KP +RS +E + E+++G VL+
Sbjct: 531 RNYVLIQSGRRLVPTQLGIVLVHGYQKIDPELVKPTMRSEIEKQLNEIALGKADYDQVLS 590
Query: 592 NCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ L + F R + M FE + + +++ +CG C
Sbjct: 591 HTLDIFRRKFSYFRDN----VSGMNELFE--ATFSSVASTAKLLSRCGKC 634
>gi|401401464|ref|XP_003881018.1| DNA topoisomerase, related [Neospora caninum Liverpool]
gi|325115430|emb|CBZ50985.1| DNA topoisomerase, related [Neospora caninum Liverpool]
Length = 924
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 217/610 (35%), Positives = 311/610 (50%), Gaps = 62/610 (10%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+++A ILS R+G S ++EF + RG+ H +TS GH+
Sbjct: 5 VLMVAEKPSIAETIAKILSGGD-FHKRKGISPVTSVWEFPGTFRGEAVHFKVTSTAGHIF 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR--- 126
+ DF +Y W +P +L+ APV K K + L++EA C++LVLWLDCDR
Sbjct: 64 QTDFPRQYNDWEKTNPVELFDAPVVKVEANPKHRLPAHLQKEAHGCKFLVLWLDCDREGE 123
Query: 127 -----------------------------------EGENIAF-------EVIEVCRAVNC 144
EGE A E +E +
Sbjct: 124 NICFEVIGIVAPHLPKLPGGQQQARRARLRKHTSREGETPATGSNRQAQESLEQTLSAVA 183
Query: 145 HLV-------LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQ 197
+V + RA+FSAL +I +A++ L PN+ +D+VDARQE+DL++G +FTRFQ
Sbjct: 184 GMVPPKRCKKIWRAKFSALAHADIQKAMRTLGSPNKNESDSVDARQELDLKVGCAFTRFQ 243
Query: 198 TMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG 257
T + + D D +LV SYGPCQ PTL F V+RY +I A + E F+T++ S + E
Sbjct: 244 TQYFQGKYGDL---DASLV-SYGPCQTPTLQFCVQRYDDIHAFQPETFYTLDTSIRVGEQ 299
Query: 258 TATFSWMRGHLFDYTSAVIIYEMC-VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASR 316
W RG +FD A ++ Q A V V ++E+ P L+T+ + K AS+
Sbjct: 300 ELFLDWERGQVFDSVVAHTYKDVVSAQGGVAVVVDVSEKEEKLPRPQALNTVNMLKLASQ 359
Query: 317 YFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLD 376
M + M+ AE LY +G ++YPRTET + +L G Q +P WG Y + LL
Sbjct: 360 RLGMGPQQAMQTAERLYLSGIVTYPRTETCKYPDSFDLRGTAAAQTSNPYWGGYVKELL- 418
Query: 377 HAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGA 436
++GL R G D HPPI P + ++ D + LYEL+ RHFLA +S
Sbjct: 419 -SSGLARP--RDGVDAGDHPPITPVRSATEADVGGGDAWALYELITRHFLASISPDCRFL 475
Query: 437 ETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVT 496
+ V ++ E+FS SGR +L + V R + + IP + G Q + + SG T
Sbjct: 476 KRKVTFSVNDEIFSLSGRHMLDGGFTRVMRGDGMKDVSIPDFRKGDQVPLHKVAVGSGQT 535
Query: 497 RPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY 556
PPP LSE+DLL M+K GIGTDA+M HI + +R Y +N R PT +G LV GY
Sbjct: 536 HPPPFLSESDLLGLMEKHGIGTDASMATHINNICERNYVSLVSNRRLEPTKLGVCLVHGY 595
Query: 557 DDMGYELWKP 566
+ +L P
Sbjct: 596 MAIDPDLVLP 605
>gi|67624339|ref|XP_668452.1| DNA topoisomerase III [Cryptosporidium hominis TU502]
gi|54659676|gb|EAL38243.1| DNA topoisomerase III [Cryptosporidium hominis]
Length = 498
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 195/458 (42%), Positives = 260/458 (56%), Gaps = 20/458 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKN-QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L VAEK SVAK +A IL Q + +S N F Y G+ C+M++TSV GHL
Sbjct: 48 ILCVAEKNSVAKEIANILCPEFQSPNRLKSKSTTNVALYFPYKFCGEECNMIVTSVRGHL 107
Query: 69 MELDFDERYRKWHSCDPADLY--HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+L F +Y W S +P L PV + D I L ++ +L+LWLDCDR
Sbjct: 108 KQLGFASKYSDWGSVNPVVLLDLSTPVISSILPDCMGIADNLTYFSKISSYLILWLDCDR 167
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENIAFEV+ +C N +L+ RA FSA+ EI+ A++ L PN+ +DAV+AR+EID
Sbjct: 168 EGENIAFEVLSICLNSNKNLITFRAHFSAITKFEINNAMKKLSFPNRALSDAVEARKEID 227
Query: 187 LRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
LR+G+SFTRF T+ F I T LSYG CQFPTLGFVV RY +I E+
Sbjct: 228 LRVGSSFTRFLTLRYSRLFPIPERT------LSYGTCQFPTLGFVVSRYKKIINFREEDE 281
Query: 246 WTINCSHK--------SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
WTI K E F W RG LFD IIYE C++ A V ++
Sbjct: 282 WTITLEVKMKIYEGNNKEMSNVIFEWERGKLFDNLFTFIIYETCIENSNARVKEIVNNRI 341
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
LK P PL+T+E+ K AS ++S + +AE+LY+ G+ISYPRTET+SFS ++
Sbjct: 342 LKRKPLPLNTVEMTKIASDKLKISPIKCINIAENLYRKGYISYPRTETNSFSDSIDISKY 401
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
++EQ +G +A LL + P G DD +HPPIHP K + E S + + L
Sbjct: 402 IKEQEKSSIFGSFANELL--YLNSFSVPRKGCKDDGSHPPIHPVKCLNKEQASSNEEWLL 459
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRV 455
YEL+ RHFL+ S+ AV ETIV+I+I+GE F T G V
Sbjct: 460 YELITRHFLSSCSEDAVIMETIVKIDISGETFKTKGTV 497
>gi|357464741|ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula]
gi|355491700|gb|AES72903.1| DNA topoisomerase [Medicago truncatula]
Length = 432
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/254 (64%), Positives = 196/254 (77%), Gaps = 16/254 (6%)
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
Y+LWKP+LR++ME DMK VS GNKSKA+VL LQQMK CFLDARL KVKLLEAM IFFE
Sbjct: 36 YKLWKPDLRAVMERDMKSVSEGNKSKAEVLDTSLQQMKTCFLDARLNKVKLLEAMAIFFE 95
Query: 621 RWS--GGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
R + G ++Q G VVR+C +CQES+MVLKK+RDGN MVGC ++PQCR+ VWLPGS+SE
Sbjct: 96 RLNRVGSDEQNGTGVVVRRCRLCQESDMVLKKNRDGNFMVGCRSYPQCRSVVWLPGSISE 155
Query: 679 AAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRI 738
A VTTN CN+CTPGPVYLIQFKF+Q +IPP +NVNHLGCIGGCDE L QL EICGTGSR+
Sbjct: 156 AVVTTNACNNCTPGPVYLIQFKFQQLKIPPSYNVNHLGCIGGCDEILTQLTEICGTGSRM 215
Query: 739 PARGRGP--------------TASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRN 784
PARGRGP TAS++N +N RQ C +CQ+ GHSS+DCPSQ SRN
Sbjct: 216 PARGRGPTASTSNVHHTNPRSTASTSNAHHTNPRQAVCSHCQETGHSSNDCPSQTRRSRN 275
Query: 785 ARANGMNPQSGMTA 798
+ GMN Q+G ++
Sbjct: 276 PQYPGMNQQNGESS 289
>gi|260801483|ref|XP_002595625.1| hypothetical protein BRAFLDRAFT_56938 [Branchiostoma floridae]
gi|229280872|gb|EEN51637.1| hypothetical protein BRAFLDRAFT_56938 [Branchiostoma floridae]
Length = 346
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 171/337 (50%), Positives = 229/337 (67%), Gaps = 4/337 (1%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GR VLNVAEK AK++A +LS N R REG S++NKIYEF ++I + M MTS
Sbjct: 2 AGRTQKVLNVAEKNDAAKAIADVLS-NGRYRRREGFSKFNKIYEFEFNILNKQSSMSMTS 60
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V+GHL+ELDF Y+KWHSC P L+ A V KH P+ KDIK+TLE EAR+CQ LV+W D
Sbjct: 61 VSGHLLELDFKGSYQKWHSCQPVALFDAGVEKHCPDQFKDIKRTLEREARQCQVLVIWTD 120
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
CDREGENI EVI+VC+AV ++ + RARFS + I A NLV P+ +DAV+ R
Sbjct: 121 CDREGENIGTEVIDVCKAVKPNIRIYRARFSDFTPQSIISACCNLVQPDYRSSDAVNVRS 180
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIGA+FTRFQT+ L+ + ++D V+SYG CQFPTLGFVVERY IQ E
Sbjct: 181 ELDLRIGAAFTRFQTLRLQKIFPNVLSDQ---VISYGSCQFPTLGFVVERYKAIQNFIPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
F + SH++E+G F+W R LF++T+ +++Y++ ++ P A V V + K K+ P
Sbjct: 238 MFHKLKVSHETEDGRVDFNWKRNRLFNHTACLVLYQIVMENPIARVISVNSRPKSKWRPQ 297
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISY 340
PL T+ELEK ASR R++++ TMK+AE LY G + +
Sbjct: 298 PLETVELEKLASRKLRINAKETMKIAEKLYNQGLVFF 334
>gi|19074185|ref|NP_584791.1| DNA TOPOISOMERASE III [Encephalitozoon cuniculi GB-M1]
Length = 621
Score = 342 bits (878), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 185/465 (39%), Positives = 273/465 (58%), Gaps = 17/465 (3%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
+++W DCDREGENI ++ ++ V + +RRARFS + R++ A++NL + N+ A+
Sbjct: 2 VIIWTDCDREGENIGRQIRDIVLKVK-KIDVRRARFSGITLRDVESALRNLGEINEAEAE 60
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AV+ R E+DLRIG++FTR QT+ L +LS+GPCQ PTLGFVVER E
Sbjct: 61 AVEVRIELDLRIGSAFTRLQTLSLGR------ARQGKKILSFGPCQVPTLGFVVERARER 114
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
++ E FWT+ + F+W RG +FD V + E V++ +EK
Sbjct: 115 ESFVPEIFWTLKFKAMHKGFKDEFTWRRGPVFDRNCVVCFFNSLSGEDARIVSR-EVKEK 173
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
KY P PL T+EL+K+ S YFR+S M++AE LY G+ISYPRTETD F + I
Sbjct: 174 TKYRPLPLRTVELQKKCSSYFRLSGHKVMEIAEGLYNRGYISYPRTETDVFDRKFDFKHI 233
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ + G YA +L+ G + +P +G ++D AH PI+P K SG S +D +
Sbjct: 234 LGKLCKDSKVGEYASKLM----GEFNHPRNGKNNDMAHLPIYPLKEGSGLSGSDRD---I 286
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
Y+ V R FL C+++ A G ET E+ I E+F SG ++ +NYL+VY ++ W +
Sbjct: 287 YDFVSRRFLGCIAKDAKGLETRYELKIGLEMFDLSGIRVIERNYLEVYYYDKWDDKEVGD 346
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ ++ + L +D G T P LSEA+L+ MDK GIGTDAT+H+HI+K+ +R YA+K
Sbjct: 347 FAV-EEIVSGDLEIDEGETSAPKYLSEAELIGLMDKNGIGTDATIHEHIQKIQERGYAVK 405
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
A P N+G AL+ GY+ G + KP LR +E +K++S G
Sbjct: 406 VAE-EIRPLNLGTALIEGYERFGLNVGKPELRKSLEVSLKKISDG 449
>gi|449328939|gb|AGE95214.1| DNA topoisomerase III [Encephalitozoon cuniculi]
Length = 621
Score = 342 bits (877), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 185/465 (39%), Positives = 273/465 (58%), Gaps = 17/465 (3%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
+++W DCDREGENI ++ ++ V + +RRARFS + R++ A++NL + N+ A+
Sbjct: 2 VIIWTDCDREGENIGRQIRDIVLKVK-KIDVRRARFSGITLRDVESALRNLGEINEAEAE 60
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AV+ R E+DLRIG++FTR QT+ L +LS+GPCQ PTLGFVVER E
Sbjct: 61 AVEVRIELDLRIGSAFTRLQTLSLGR------ARQGKKILSFGPCQVPTLGFVVERARER 114
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
++ E FWT+ + F+W RG +FD V + E V++ +EK
Sbjct: 115 ESFVPEIFWTLKFKVMHKGFKDEFTWRRGPVFDRNCVVCFFNSLSGEDARIVSR-EVKEK 173
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
KY P PL T+EL+K+ S YFR+S M++AE LY G+ISYPRTETD F + I
Sbjct: 174 TKYRPLPLRTVELQKKCSSYFRLSGHKVMEIAEGLYNRGYISYPRTETDVFDRKFDFKHI 233
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ + G YA +L+ G + +P +G ++D AH PI+P K SG S +D +
Sbjct: 234 LGKLCKDSKVGEYASKLM----GEFNHPRNGKNNDMAHLPIYPLKEGSGLSGSDRD---I 286
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
Y+ V R FL C+++ A G ET E+ I E+F SG ++ +NYL+VY ++ W +
Sbjct: 287 YDFVSRRFLGCIAKDAKGLETRYELKIGLEMFDLSGIRVIERNYLEVYYYDKWDDKEVGD 346
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ ++ + L +D G T P LSEA+L+ MDK GIGTDAT+H+HI+K+ +R YA+K
Sbjct: 347 FAV-EEIVSGDLEIDEGETSAPKYLSEAELIGLMDKNGIGTDATIHEHIQKIQERGYAVK 405
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
A P N+G AL+ GY+ G + KP LR +E +K++S G
Sbjct: 406 VAE-EIRPLNLGTALIEGYERFGLNVGKPELRKSLEVSLKKISDG 449
>gi|441620017|ref|XP_004088632.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1
[Nomascus leucogenys]
Length = 803
Score = 341 bits (875), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 219/652 (33%), Positives = 329/652 (50%), Gaps = 68/652 (10%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-------------------------------------- 24
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 25 -------KYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 77
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + +ARFS+++D +I A+ L +P+ A +VDAR
Sbjct: 78 GENICFEVLDAVLPVMNKAHGGEKTVFQARFSSIMDTDICNAMACLGEPDHNEALSVDAR 137
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 138 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 193
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 194 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 253
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 254 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 313
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++L E +
Sbjct: 314 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLXEYI 368
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + ++ ++S +PT
Sbjct: 369 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLPTCQR 428
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 429 GDTFPVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 488
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 489 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 548
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSR 652
F + E M + F + A G+ + +CG C ++K +
Sbjct: 549 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCHRFMKYIQKPK 594
>gi|452823186|gb|EME30198.1| DNA topoisomerase III alpha [Galdieria sulphuraria]
Length = 853
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 228/669 (34%), Positives = 344/669 (51%), Gaps = 34/669 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL V EKPS+A++VA LS++ R R R +++EF RGQ ++ +TSV GH+
Sbjct: 4 VLIVTEKPSIAETVANALSQD-SYRTRAARKSPCRVHEFRGYFRGQMANIKVTSVLGHVY 62
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF + Y W+ + +L+ A VRK V + + + L EA +LVLWLDCDREGE
Sbjct: 63 SFDFTKEYNDWNLVEAEELFFAGVRKVVADSGSKVVRHLATEAIGVDYLVLWLDCDREGE 122
Query: 130 NIAFEVIEVCR--AVNCHLV------LRRARFSALIDREIHQAVQNL--VDPNQWFADAV 179
NIAFEVI + N ++ + RA+FSAL ++I +A++NL VD NQ A AV
Sbjct: 123 NIAFEVISCVKHSLQNVPVIYGNRANVFRAKFSALTTKDICRAMENLTYVDTNQ--ASAV 180
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
D R EIDL++G +FTRFQT + FH + D LV SYGPCQ PTLGF V R EI
Sbjct: 181 DVRAEIDLKVGVAFTRFQT---RYFHDKFSSLDSKLV-SYGPCQTPTLGFCVGRLDEISK 236
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKV---RQQE 296
E F+ + + + T + RG +F+ A I E + K+ +
Sbjct: 237 FSPETFFLVVVNVRKNNRTTNWYSSRGKIFERKVASAIVERINSYSSGISGKIIDRTTSK 296
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
+ ++ P PL+T+EL K AS+ +MS +VAE LY G ISYPRTE+ + S ++
Sbjct: 297 ERRHRPLPLNTVELLKLASKRLKMSPHQVAQVAESLYTQGLISYPRTESSKYPSSFDIEA 356
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPG-SGGHDDKAHPPIHPTKFSSGESRWSQDHY 415
++ E W P + + G + N GG D HPPI P + + S + +H
Sbjct: 357 VLSELEKTSTWFPIVKIFRE---GKYLNKSRQGGVDKGDHPPITPVRGAERGSLRNAEHE 413
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR----FESWG 471
++YEL+V FLA VS+ AV + ++GE F S R ++ +L+ ES
Sbjct: 414 RVYELIVYSFLASVSEDAVIMSQQYWMLLSGEKFVFSQRKLVVPGWLEFSNSSNHMESLN 473
Query: 472 GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
+ + T++L+ T PP LSE+DL+ M+K GIGTDA++ HI ++
Sbjct: 474 MNSEIFFEQNESIEDFTVSLEEMQTEPPEYLSESDLVGLMEKYGIGTDASIPTHINNIIT 533
Query: 532 RFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
R Y + R PT +G L GY + +L P +RS +E ++ +V+ G V+
Sbjct: 534 RGYVRLSSERRLIPTQLGILLYRGYQKIDPQLVSPVVRSHIEQEIAQVASGQVDAMSVVE 593
Query: 592 NCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKS 651
+CL F+ R K ++AM FE + + + G+ CG C ++++
Sbjct: 594 HCLSVFWKKFIYFR----KHIDAMDDLFE--TVFTNMHSRGKKFSLCGRCNRYMKLIEEK 647
Query: 652 RDGNLMVGC 660
++ + C
Sbjct: 648 QNRLFCMNC 656
>gi|195340394|ref|XP_002036798.1| GM12581 [Drosophila sechellia]
gi|194130914|gb|EDW52957.1| GM12581 [Drosophila sechellia]
Length = 921
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 202/590 (34%), Positives = 316/590 (53%), Gaps = 23/590 (3%)
Query: 58 HMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQW 117
H MTSV GH+M LDF++++ W DP L+ K K++++K L EAR C +
Sbjct: 98 HFRMTSVCGHVMSLDFNKKFNCWDKVDPIQLFGCATEKKETNPKQNMRKFLANEARGCDY 157
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQ 173
LVLWLDCD+EGENI FEV++ + V ++ V RA FSA+ +++I +A++ L PN+
Sbjct: 158 LVLWLDCDKEGENICFEVMDAVKQVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNE 217
Query: 174 WFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER 233
A +VDARQE+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R
Sbjct: 218 NEAKSVDARQELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKR 273
Query: 234 YWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVR 293
+ +IQ + E FW + E T W RG +F A+++ + ATV V
Sbjct: 274 HDDIQTFKPESFWHLQLLAGQPE--VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVA 331
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+E K P L+T+EL + S + M++AE LY G+ISYPRTET+ + + +
Sbjct: 332 SKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFD 391
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQD 413
L ++ D+G A+ +L G + P G D HPPI P K + S + +D
Sbjct: 392 LPAVLHVLKPSADFGEEARSIL----GDIQTP-RKGKDAGDHPPITPMKLGN-RSDFDRD 445
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-G 472
+++YE + RHF+ VS+ T ++ + E FS + V++ + V + ++G
Sbjct: 446 TWRVYEFICRHFMGTVSRDLKYRVTTAKLRVGMETFSCTASVLIDAGFTKVMTWSAFGKD 505
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
P +V G + + L T PP L+E++L++ M++ GIGTDA++ HI + R
Sbjct: 506 EPQPPFVQGTEVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNICQR 565
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y + + PT +G LV GY + EL P +R+ +E + ++ G+ + DVL +
Sbjct: 566 NYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDVLRH 625
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
++ K F+ VK +++M FE +G+ +CG C+
Sbjct: 626 AIKIFKLKFMYF----VKNIDSMDALFE--VSFSPLAESGKAHSRCGKCR 669
>gi|7510001|pir||T31599 hypothetical protein Y48C3A.q - Caenorhabditis elegans
Length = 646
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 224/652 (34%), Positives = 333/652 (51%), Gaps = 66/652 (10%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKP +A S+A +LS Q + R+G + + E++ G+ +TS GH+M
Sbjct: 5 VLMVAEKPLLADSIANLLSNGQAKK-RKGWNGVCSVSEYDGQFNGRAARFKVTSTCGHVM 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDF ++ W DPA+LY AP ++ K + + L EA+ +LVLWLDCD+EGE
Sbjct: 64 SLDFPPKFNNWERVDPAELYSAPTQRIEANPKMKMNEFLASEAKNADFLVLWLDCDKEGE 123
Query: 130 NIAFEVIEVCRAVNCHLV---------LRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
NI FEVI+ AV C + + RA FSA+ +++I A++NL P+Q + +VD
Sbjct: 124 NICFEVID---AVKCAMFKNRQDFMSDVYRAHFSAITEKDIKAAMRNLGRPDQNMSHSVD 180
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
ARQE+DLRIG SFTRFQT + + D D N V+SYGPCQ PTLGF V R+ +I
Sbjct: 181 ARQELDLRIGCSFTRFQTKFFQGKYGDL---DSN-VISYGPCQTPTLGFCVTRHDQIVQF 236
Query: 241 ESEEFWTINCSHKSEEGTATFS--WMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
+ E++W + + + + FS W RG +FD A + + + T V V ++E
Sbjct: 237 KPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEVARVFVDRIKKCHTGLVLDVSKKEAR 296
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
K P L+T+EL + AS MS TM VAE LY G+ISYPRTET ++S+ +L G +
Sbjct: 297 KERPCALNTVELMRVASSSLGMSPSTTMHVAEALYTQGYISYPRTETTAYSANFDLTGTL 356
Query: 359 QEQIGHPDWGPYAQ-------------------------RLLDHAAGLWRNPGSGGHDDK 393
+ G WG R A + P S G D
Sbjct: 357 KILAGDRKWGSVVSQASGNGKIFDFFSIFFDFFDFFDFFRCFSVLADGIKRPKS-GVDKG 415
Query: 394 AHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSG 453
HPPI P + + G S D ++YE V +HF+A + + V T V+++ E F+ G
Sbjct: 416 DHPPITPMRPNHGG--LSGDMSRIYEYVSQHFVATLMKQCVYEVTTVKMSCGDEQFTLQG 473
Query: 454 RVILAKNYLDVYRFESW-GGLVIPTYVH--GQQFIPTTLTLDSGVTRPPPLLSEADLLSC 510
+ ++ + V + S +P + G + + + T PP L+EA+L++
Sbjct: 474 KNVVEPGFTAVMPWLSVEEECSVPKSLQQIGAKIELQNAEIQARETTPPGYLTEAELITL 533
Query: 511 MDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRS 570
M+K GIGTDA++ HI + R Y ++ R PT +G+ LV GY + EL P +R+
Sbjct: 534 MEKHGIGTDASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRA 593
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERW 622
+E + V+ G KA +LD +K L+E IFF+ +
Sbjct: 594 ELEEQLNLVASG---------------KADYLDRNFEKKFLIENF-IFFKTF 629
>gi|226496175|ref|NP_001141472.1| uncharacterized protein LOC100273582 [Zea mays]
gi|194704716|gb|ACF86442.1| unknown [Zea mays]
gi|414864984|tpg|DAA43541.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 404
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 164/242 (67%), Positives = 188/242 (77%), Gaps = 5/242 (2%)
Query: 511 MDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRS 570
MDKAGIGTDATMHDHIKKLLDR YA KD NTRF+PTN+GEALVMGYD+MGYELWKP LRS
Sbjct: 1 MDKAGIGTDATMHDHIKKLLDRCYATKDENTRFSPTNLGEALVMGYDEMGYELWKPYLRS 60
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGG-EDQQ 629
MME+DMK VSVG KSK++VL +CLQQMKACFLDAR+KK KLL+AMG FF R + + Q
Sbjct: 61 MMEADMKSVSVGTKSKSEVLESCLQQMKACFLDARVKKAKLLDAMGTFFARSNRPINETQ 120
Query: 630 AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
EVVR CG C S M+LK+ G MVGC ++PQCRN VWLPGS+SEAAVT C C
Sbjct: 121 NPVEVVRPCGACNGSEMLLKRRASGEFMVGCRSYPQCRNVVWLPGSLSEAAVTNQVCPIC 180
Query: 690 TPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSR----IPARGRGP 745
PGPVY IQFKFR+ +IPP F+V+HLGC+GGCD+ L+ L+EI GSR PARG P
Sbjct: 181 APGPVYKIQFKFRRRDIPPNFDVDHLGCVGGCDDILKDLMEISRFGSRSQAATPARGPTP 240
Query: 746 TA 747
Sbjct: 241 NG 242
>gi|307133770|ref|NP_001120391.2| topoisomerase (DNA) III beta isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 845
Score = 339 bits (869), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 220/645 (34%), Positives = 331/645 (51%), Gaps = 43/645 (6%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ R+G + ++E+ S GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGSA-SSRKGLNGACSVHEYTGSFMGQTVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K + K L+ E R C ++VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ RA + RA+FS++ D +I A+ L +PN+ A +VDAR
Sbjct: 122 GENICFEVLDAIHPVMNRAHGGERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
FQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 -------------FQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 224
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + +E W R +FD A + + A V V ++EK K
Sbjct: 225 ETYWVLQVKVSRGQENPLILDWDRVRVFDREIAQMFINITKTAKEAQVESVSKKEKAKQR 284
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 285 PQALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLRQQ 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL A G+ N G D HPPI P + S+ E+ D ++LYE +
Sbjct: 345 ANNPFWADMVKTLL--AEGI--NRPRKGTDAGDHPPITPMR-SATEAELGGDAWRLYEYI 399
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH- 480
RHF+A +S +T + ++ E F+T+ + +++ + ++ W G+
Sbjct: 400 TRHFIATISHDCKYLQTSIAFSVGPEKFTTTCKEVISPGFTEIM---PWQGIPKEESFQP 456
Query: 481 ---GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G +F + L T PP L+EA+L+S M++ GIGTDA++ HI + R Y
Sbjct: 457 CERGDKFSVDEMKLMEKQTCPPDYLTEAELISLMERHGIGTDASIPVHINNICQRNYVTV 516
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
++ R PT++G LV GY + EL P +RS +E + ++ G + VL + L
Sbjct: 517 ESGRRLKPTSLGIVLVHGYYKIDPELVLPTIRSAVEKQLNLIAQGKANFQQVLDHTLDIF 576
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
K F + E M + F + A G+ + +CG C
Sbjct: 577 KRKFHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 615
>gi|195565409|ref|XP_002106294.1| GD16199 [Drosophila simulans]
gi|194203668|gb|EDX17244.1| GD16199 [Drosophila simulans]
Length = 821
Score = 339 bits (869), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 202/587 (34%), Positives = 314/587 (53%), Gaps = 23/587 (3%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTSV GH+M LDF+++Y W DP L+ K K++++K L EAR C +LVL
Sbjct: 1 MTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLANEARGCDYLVL 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFA 176
WLDCD+EGENI FEV++ + V ++ V RA FSA+ +++I +A++ L PN+ A
Sbjct: 61 WLDCDKEGENICFEVMDAVKQVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEA 120
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
+VDARQE+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +
Sbjct: 121 KSVDARQELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDD 176
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
IQ + E FW + E T W RG +F A+++ + ATV V +E
Sbjct: 177 IQTFKPESFWHLQLLAGQPE--VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKE 234
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K P L+T+EL + S + M++AE LY G+ISYPRTET+ + + +L
Sbjct: 235 AFKSKPQALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPA 294
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
++ D+G A+ +L G + P G D HPPI P K + S + +D ++
Sbjct: 295 VLHVLKPSADFGEEARSIL----GDIQTP-RKGKDAGDHPPITPMKLGN-RSDFDRDTWR 348
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVI 475
+YE + RHF+ VS+ T ++ + E FS + V++ + V + ++G
Sbjct: 349 VYEFICRHFMGTVSRDLKYRVTTAKLRVGMETFSCTASVLIDAGFTKVMTWSAFGKDEPQ 408
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P +V G + + L T PP L+E++L++ M++ GIGTDA++ HI + R Y
Sbjct: 409 PPFVQGTEVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNICQRNYV 468
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+ + PT +G LV GY + EL P +R+ +E + ++ G+ + DVL + ++
Sbjct: 469 HIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDVLRHAIK 528
Query: 596 QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
K F + VK ++ M FE +G+ +CG C+
Sbjct: 529 IFKLKF----MYFVKNIDNMDALFE--VSFSPLAESGKAHSRCGKCR 569
>gi|395517223|ref|XP_003762778.1| PREDICTED: DNA topoisomerase 3-beta-1 [Sarcophilus harrisii]
Length = 801
Score = 339 bits (869), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 206/582 (35%), Positives = 308/582 (52%), Gaps = 23/582 (3%)
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K + K L+ E R C ++VLWLDCD+E
Sbjct: 1 MTLDFTGKYNHWDRVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRSCDYIVLWLDCDKE 60
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 61 GENICFEVLDAVLPVMNKPRGTEKTVFRARFSSITDTDICNAMGRLGEPDHNEALSVDAR 120
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 121 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 176
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + +E + W R +FD A + + E A V ++EK K
Sbjct: 177 ELYWVLQAKINPDKESSVLLDWDRVRVFDREIAQMFLNITRTEKEAKVEGTSRKEKAKQR 236
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 237 PLALNTVEMLRVASSSLGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLKQQ 296
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P + S+ E+ D ++LYE +
Sbjct: 297 ANHPYWAQTVKQLL--ADGI--NRPRKGHDAGDHPPITPMR-SATEAELGGDAWRLYEYI 351
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG-LVIPTYVH 480
RHF+A VS + + I E F+ SG+ +++ + ++ ++S +PT
Sbjct: 352 TRHFIATVSYDCKYLQNTISFQIGPERFTCSGKTLISPGFTEIMPWQSIPPEESLPTCQK 411
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + + T PP L+EA+L++ M++ GIGTDA++ HI + R Y ++
Sbjct: 412 GDTFALSEVKMLEKQTSPPDYLTEAELITLMERHGIGTDASIPVHINNICQRNYVTVESG 471
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + +++G VL + L K
Sbjct: 472 RRLRPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLSLIALGKADYHQVLEHTLNIFKRK 531
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 532 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 567
>gi|170583127|ref|XP_001896443.1| DNA topoisomerase III beta-1 [Brugia malayi]
gi|158596370|gb|EDP34727.1| DNA topoisomerase III beta-1, putative [Brugia malayi]
Length = 858
Score = 338 bits (867), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 227/684 (33%), Positives = 339/684 (49%), Gaps = 44/684 (6%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
P+ V+ VAEKP +A+S+A IL+ + + R+G + + E+ +GQ +TS G
Sbjct: 3 PLTVMMVAEKPMLAESIAKILADGK-VEKRKGWNNVCSVSEYCGQFQGQSAIFKVTSTCG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M LDF + W DP L+ + K K + + L EA+ C +LVLWLDCD+
Sbjct: 62 HIMSLDFPPKMNNWEKVDPVMLFSSSTAKKEANPKMRMNEYLASEAKGCDFLVLWLDCDK 121
Query: 127 EGENIAFEVIEVCR-------AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
EGENI FEVIE R + + RA FSA+ ++I A++NL PN + +V
Sbjct: 122 EGENICFEVIEAVRNSIKKSKTGDIMGNVYRAHFSAITAKDIKSAMRNLGRPNINESLSV 181
Query: 180 DARQEIDLRIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
DARQE+DLRIG +FTRFQT K ++DS T +S+GPCQ PTLGF V R+ I
Sbjct: 182 DARQELDLRIGCAFTRFQTRYFQGKYGNLDSTT------ISFGPCQTPTLGFCVTRHDLI 235
Query: 238 QAHESEEFWTINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
+ E +W + ++ G T + +RG +FD + ++ ++ V V E
Sbjct: 236 TQFKPEPYWILVAIFETSAGDTLKPTHVRGRIFDKDVCQLFFDRIKKQNQGVVVDVISSE 295
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K P L+T+EL K AS +S TM AE LY GFISYPRTET ++ S +
Sbjct: 296 LRKERPQALNTVELLKVASSGLGLSPTQTMSTAEYLYTRGFISYPRTETTAYPSNFDFSE 355
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
++ Q W ++LL RN G D HPPI P + + G + D K
Sbjct: 356 ALRHQQNDSRWKDIVKKLLSEGITKPRN----GEDKGDHPPISPLRGNDGS--LTGDALK 409
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
+Y+ V +HF+A + QP + ++INIA E+F + ++ Y ++ W +
Sbjct: 410 IYDYVTQHFIATLMQPCIYLVKSIKINIANEIFIAKSKCVINLGYTEIM---VWQKIEED 466
Query: 477 T----YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
T V G + + T PP L+E++L+S M+K GIGTDA++ HI + R
Sbjct: 467 TQNYNIVKGSKLNLKDAKICEYATTPPDYLTESELISLMEKHGIGTDASIPVHISNICQR 526
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y ++ R PT +G ALV GY + EL P +RS +ES + ++ G V +
Sbjct: 527 NYVTVESKRRLKPTKLGIALVHGYWRIDSELVLPTMRSEVESQLNLIAKGYADFCSVKNH 586
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAA-GEVVRQCGICQESNMVLKKS 651
L+ RLK + E + + + AA G+ +CG C+ M L S
Sbjct: 587 VLENF-------RLKFIYFAENISLVDSLFEDSFTSLAASGKPFSRCGKCRRF-MKLVAS 638
Query: 652 RDGNLMVGCLAFPQCRNAVWLPGS 675
+ L P C++ LP +
Sbjct: 639 KPQRLHC-----PNCQDTYSLPSA 657
>gi|109490882|ref|XP_001077625.1| PREDICTED: DNA topoisomerase 3-alpha [Rattus norvegicus]
Length = 735
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 229/329 (69%), Gaps = 4/329 (1%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E + CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A ++L +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGF 337
ELEK ASR R++++ TM++AE LY G
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGL 359
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 572 MESDMKEV-SVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ- 629
ME M V V +K K+ L ++ L +R ++ E M I + ++ G D+
Sbjct: 304 MEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGLDEAL 363
Query: 630 ------------------AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVW 671
A E VR+C C + +MVLK + G + C FP+CR+AVW
Sbjct: 364 SQYLGERTEVAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCTGFPECRSAVW 422
Query: 672 LPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEI 731
P SV EA+ ++ C+ C P PVY ++ KF++ +PP + +GCIGGCDETL+++ +
Sbjct: 423 FPDSVLEASRDSSVCSVCQPAPVYRLKLKFKRGSLPPSMPLEFVGCIGGCDETLKEIFGL 482
Query: 732 CGTGSRIPARGRGPTASSNNGQQSN 756
SR P R P+ Q N
Sbjct: 483 --RFSRAPPRASQPSGHLQASQALN 505
>gi|2114264|dbj|BAA20009.1| topoisomerase-III [Homo sapiens]
Length = 753
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 225/679 (33%), Positives = 328/679 (48%), Gaps = 93/679 (13%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGS-LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FT + ++S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFT-------------------SSLISFGPCQTPTLGFCVERHDKIQSFKP 222
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 223 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 282
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ RM +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 283 PLALNTVEM-------LRMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 335
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK-----------------FS 404
HP W +RLL A G+ N GHD HPPI P K F
Sbjct: 336 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMKSATEAELGTALIPYPVCFQ 391
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL-- 462
G+ Q HF+A VS ++ + I E+F+ SG+ +L+ +
Sbjct: 392 GGKGELRQ-----------HFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGHTTG 440
Query: 463 -----------DVYRFESWGGL--------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLS 503
+ S G +PT G F + + T PP L+
Sbjct: 441 PAFLLCAFMGRQTFYIVSGDGRPRSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLT 500
Query: 504 EADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYEL 563
EA+L++ M+K GIGTDA++ HI + R Y ++ R PTN+G LV GY + EL
Sbjct: 501 EAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAEL 560
Query: 564 WKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWS 623
P +RS +E + ++ G VL + L K F + E M + F +
Sbjct: 561 VLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVDSIAGMDELMEVSFSPLA 620
Query: 624 GGEDQQAAGEVVRQCGICQ 642
A G+ + +CG C
Sbjct: 621 ------ATGKPLSRCGKCH 633
>gi|156084162|ref|XP_001609564.1| DNA topoisomerase [Babesia bovis T2Bo]
gi|154796816|gb|EDO05996.1| DNA topoisomerase, putative [Babesia bovis]
Length = 878
Score = 335 bits (858), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 219/675 (32%), Positives = 334/675 (49%), Gaps = 52/675 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPC------------ 57
VL VAEKP +A+++A L +Q ++ + + + I C
Sbjct: 6 VLVVAEKPKIAETLAAHLCTDQRTLLKRKGVSEDIMCDLGIHIISNTCITWECRGKFLST 65
Query: 58 --HMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRC 115
+TS GH+ + F RY W+S +P +L++ + I + L EA+ C
Sbjct: 66 TVDFKVTSTAGHIYSVAFAPRYNCWNSTNPVELFNGEIILEEASPDSKIPRHLASEAKGC 125
Query: 116 QWLVLWLDCDREGENIAFEVIEVCRAVNCHLV------LRRARFSALIDREIHQAVQNLV 169
+L+L LD DREGENIAFEVI VC HLV + RARFSAL +I +AV NL
Sbjct: 126 SYLLLCLDNDREGENIAFEVIRVCHQ---HLVKIGSKQIFRARFSALTRADILRAVDNLC 182
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
DPN+ +DAV ARQ IDLR+G +FTRFQT + + D + +SYGPCQ PTL F
Sbjct: 183 DPNKLESDAVRARQTIDLRVGCAFTRFQTTFFQGKY----GDLDSTCISYGPCQTPTLFF 238
Query: 230 VVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEP---- 285
V+RY I + E ++ + C E F+W RG +FD + A I ++ E
Sbjct: 239 CVDRYNAIARFQEEPYYKLICDISYEGQYIPFTWNRGRIFDKSVARIFQQLVRCEKYYNI 298
Query: 286 -------TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFI 338
+T + + + P L+T+ + K AS F M TM+ AE LY G+I
Sbjct: 299 LQLMGANKGVLTDIVTKRSINSSPKALNTVTMLKEASSRFGMGPHKTMQTAEHLYLNGYI 358
Query: 339 SYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
SYPRTETD + + + ++++ P++ L+ L GGHD HPPI
Sbjct: 359 SYPRTETDCYPTSFDWAELLKKLHTVPEYTNLVDLLMQSGNTLG---PQGGHDVGDHPPI 415
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
P + S + + D +KLY+L+VRHFLA V+ P T ++++ E F S ++
Sbjct: 416 IPVRCVS-QGTLTGDDWKLYDLIVRHFLASVAGPCTTETTTYDLDVGSETFQFSNTRVVR 474
Query: 459 KNYLDVY-RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
+ Y + + +++ + + G+ ++ G T PPPLLSE+DLL M+ GIG
Sbjct: 475 QGYTALLPKSQNYVSIAL-KLTKGEGCDVAKFRVEEGTTSPPPLLSESDLLDHMESKGIG 533
Query: 518 TDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMK 577
TDA+M HI + R Y N R PT +G+ALV GY + EL P++R +E
Sbjct: 534 TDASMATHIHNIFTRNYVRLLGNRRIEPTKLGKALVDGYMQVDPELVLPSVRGAIEGYCN 593
Query: 578 EVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVR 636
++ G V+ + + + F K ++++ FFE +++ ED G +
Sbjct: 594 LIADGKADCESVIDHVCRMFRMKFEHYITK----IDSINTFFETQFTPIED---FGVPMS 646
Query: 637 QCGICQESNMVLKKS 651
+CG C + L ++
Sbjct: 647 RCGTCNRYMLYLNRA 661
>gi|294889461|ref|XP_002772824.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
gi|239877374|gb|EER04640.1| DNA topoisomerase 3-beta-1, putative [Perkinsus marinus ATCC 50983]
Length = 813
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 196/525 (37%), Positives = 291/525 (55%), Gaps = 12/525 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+++A L K + R G S +++EFN +G P + +TSV GH+
Sbjct: 5 VLMVAEKPSIAEALAKSLCKGK-YNSRRGVSPVGQVHEFNGEFQGSPAWLKITSVAGHVY 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF W DPA L+ + + K+ + + L E++ C LVLWLDCDREGE
Sbjct: 64 SIDFPPELNNWDRVDPAKLFESKTVQKEANPKQRMPQHLRSESKGCDHLVLWLDCDREGE 123
Query: 130 NIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
NI +EV++ V ++ + RA+FS+L+ +++ A +NL PNQ A +VDARQEIDL+
Sbjct: 124 NICYEVMQNVVPNLSDRKNVWRAKFSSLVAKDLQHAYRNLGYPNQNEALSVDARQEIDLK 183
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
G +FTRFQT + + D D +LV SYGPCQ PTL F V R+ +IQ + E ++TI
Sbjct: 184 TGVAFTRFQTRYFQGKYGDL---DSSLV-SYGPCQTPTLWFCVRRHNDIQTFQPETYYTI 239
Query: 249 NCSHKSEEGTATF--SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + + + W RG LFD +A M ATVT V ++E+ + P ++
Sbjct: 240 DVKLEGSQLASPLWLEWSRGQLFDLQAATTFKSMIDAYQWATVTDVSEKEERRSRPGAMN 299
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+ + K AS+ M + M+VAE LY +G+I+YPRTET + +L V Q +P
Sbjct: 300 TVLMLKLASQQLGMGPQQAMQVAERLYLSGYITYPRTETTKYPPAFDLREAVSFQSRNPY 359
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG +A LL GL N G+D HPPI P + ++ S D ++L++++ RHFL
Sbjct: 360 WGEFATELL--TTGL--NRPKEGYDAGDHPPITPVRSATEGDFGSSDSWRLFDMLTRHFL 415
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A + T V I E FS GR + + + V + +P G++
Sbjct: 416 ASLGHDCKFTRTKVHFVIGDEKFSVGGRRMKSPGFTRVQYTGEMQDIYVPPLKIGEKLQI 475
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
+ ++ S T+PPP LSE+DLL M+K GIGTDA+M HI + +
Sbjct: 476 ASKSISSAKTKPPPYLSESDLLGLMEKNGIGTDASMATHINNICE 520
>gi|403352748|gb|EJY75891.1| DNA topoisomerase [Oxytricha trifallax]
Length = 1342
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 235/760 (30%), Positives = 376/760 (49%), Gaps = 64/760 (8%)
Query: 3 GGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMT 62
G P V+ VAEKPS+A S+A LS N ++G +R +Y F + +G+ H +T
Sbjct: 512 GVSSPCVVMMVAEKPSIALSIAESLSNN--YEQKKGIARQIPVYTFKGNFQGKTAHFRVT 569
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GH+ DF Y+ DP L+ AP + + + I K L+ + ++VLWL
Sbjct: 570 SVAGHVYNRDFPLDYQD-RRMDPLALFDAPTVRKLDGSSRTIAKHLQTVSSGIDFMVLWL 628
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLR----RARFSALIDREIHQAVQNL-VDPNQWFAD 177
DCD+EGENI FEV+++CR N R RA+FS++ ++I A + +P+ +
Sbjct: 629 DCDKEGENICFEVLDICRK-NIPKSKRQRVFRAKFSSIAKKDIQTAFDTVKAEPSYNESV 687
Query: 178 AVDARQEIDLRIGASFTRFQTM----LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER 233
+VDARQ +DL+IG +F+RFQT LL+ H +++YGPCQ PTLGF V++
Sbjct: 688 SVDARQVMDLKIGVAFSRFQTQYFQYLLRGQH-------EIRMITYGPCQTPTLGFCVDQ 740
Query: 234 YWEIQAHESEEFWTINC--SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTK 291
+I+ E +W+I + K + + W RG ++D T I++ +A V
Sbjct: 741 AEKIKKFIPEPYWSIETVIADKDRGKSYSLKWGRGKIYDRTVTTIVHSRIACFDSAEVID 800
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSG 351
V++ + ++ P L+T+++ K AS+ + MS+ TMK AE LY G+I+YPRTE+ ++S+
Sbjct: 801 VQKSKAVQGKPQGLNTVKMLKVASKTYGMSAHDTMKTAEHLYLRGYITYPRTESTTYSAN 860
Query: 352 TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS----GE 407
N I+Q+ + +WG YA RLL+ G+ P G D HPPI P K +S GE
Sbjct: 861 FNFDEILQQHQQNSEWGSYATRLLN---GMMVKP-KKGVDAGDHPPITPVKSASRASLGE 916
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG-----EVFSTSGRVILAKNYL 462
W KLY + R+F +S A + V + E F G +++ +L
Sbjct: 917 REW-----KLYNFITRNFFGSISPDASYDQVKVLFQVGNKESIIENFKLKGNILVEHGFL 971
Query: 463 DVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
++ + IP + GQQ + + G T+ P L+EA L+S M+K GIGTDA++
Sbjct: 972 EIMPWLLAADKEIPVFKIGQQVEVRQIKITEGKTQAPGYLTEAKLISRMEKNGIGTDASI 1031
Query: 523 HDHIKKLLDR-FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSV 581
HI +++R F + D + PT +G ALV GY + EL P++R +E + ++
Sbjct: 1032 PTHINNIIERKFVTVLDPGRQLVPTPLGSALVKGYCQIDPELVLPSIRQNIEKSCELIAK 1091
Query: 582 GNKSKADVLANCLQ--QMKACFLDARLKKVKLLEAMGIFFERWSGGE----------DQQ 629
G A +LA+ L + K F A + ++ + +M + ++ G+ D +
Sbjct: 1092 GKADFAKILAHVLTCFRKKFEFFRANISSMEKILSMMLRHQQGRLGKELMLTNQIQLDDE 1151
Query: 630 AAGEVVRQCGICQES--NMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+ + C C N+ S+ L +C + + G +S AA
Sbjct: 1152 SKRTAINFCIRCFTGYLNIQYHNSKGWGL--------KCDSCTFRVGVLSGAARVVKEDT 1203
Query: 688 SCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQ 727
C Y + + + PG H GC+ CD L Q
Sbjct: 1204 KCEECDSYQVSATYMKDSPFPGKRSEHTGCL-FCDSLLNQ 1242
>gi|145347645|ref|XP_001418273.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578502|gb|ABO96566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 863
Score = 332 bits (850), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 211/618 (34%), Positives = 312/618 (50%), Gaps = 39/618 (6%)
Query: 7 PINVLNVAEKPSVAKSVAGILS-----------KNQGL--RIREGRSRYNKIYEFNYSIR 53
P +L VAEKPS+A ++A L+ +GL + E + + F R
Sbjct: 2 PTRILCVAEKPSLASAIARTLARGGDGGDRGVVARRGLATEVHEFATAREGSWAFASGTR 61
Query: 54 GQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEAR 113
+TS TGH+ ++F RY+ W C+P +L+ A V K D + + LE EAR
Sbjct: 62 DGRAEWRVTSTTGHVASVEFSARYQAWEGCEPGELFAADVVKRA--DGRMVGH-LEREAR 118
Query: 114 RCQWLVLWLDCDREGENIAFEVIEVCR-----------AVNCHLVLRRARFSALIDREIH 162
C +LVL+LDCDREGENI FEV+E C A + ++ RA+FSA+ I
Sbjct: 119 GCDYLVLFLDCDREGENICFEVMEACAGGLKTGATEPGAPSARIL--RAKFSAVTRESIE 176
Query: 163 QAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPC 222
+A++ L +PN+ A AVDARQE+DL++G +FTRFQT N + D R V+SYGPC
Sbjct: 177 RAMRTLGEPNRNEALAVDARQELDLKMGVAFTRFQTQYFLNKY--DRLDAR--VVSYGPC 232
Query: 223 QFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFS--WMRGHLFDYTSAVIIYEM 280
Q PTLGF V+R+ EI H E +W ++ S T + W R LFD + ++
Sbjct: 233 QTPTLGFAVQRHLEIIRHVPEPYWALDASFDDAATGDTIAPAWRRTRLFDEETTRAFLQL 292
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISY 340
VT + + + P L+T+E+ K AS M + M+VAE LY AG ISY
Sbjct: 293 VNDANEFRVTSIEVNAEKRGRPSGLNTVEMLKAASAGLGMGAHRAMQVAERLYMAGHISY 352
Query: 341 PRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHP 400
PRTE+ ++ G L + Q HP WG + RLLD ++ G D HPPI P
Sbjct: 353 PRTESTAYPRGFELKQTLTIQKSHPTWGAFVSRLLDESSMTSPKRGVDAGD---HPPITP 409
Query: 401 TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
+ S+ + + ++LY+ + RHF+A VS ++ GE F+ G+ ++
Sbjct: 410 MRASTEDQVGGGEAWRLYDFISRHFIASVSPDCEYETQTATLDAGGEEFTLQGKRVIEHG 469
Query: 461 YLDVYRFESWGGLVIPT-YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTD 519
+ ++ +P V G + ++ L S T PP L+E++L+ M+K GIGTD
Sbjct: 470 WTEIMPHRMIEDSSLPVCVVQGARIPLKSVRLRSESTSPPEYLTESELIGLMEKNGIGTD 529
Query: 520 ATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEV 579
A++ HI + R Y R P+ +G LV GY + EL P +R +E + V
Sbjct: 530 ASIPTHINNIQVRKYVDVAKGRRIVPSQLGITLVQGYHAIDSELVLPTVRRHVERQLDLV 589
Query: 580 SVGNKSKADVLANCLQQM 597
+ G V+A+ L QM
Sbjct: 590 AKGQAPYEGVVAHILAQM 607
>gi|432876346|ref|XP_004073003.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1-like
[Oryzias latipes]
Length = 751
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 212/568 (37%), Positives = 300/568 (52%), Gaps = 52/568 (9%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILSK R+G + ++E+ + +GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIARILSKGSCTS-RKGLNGACSVHEYTGTFQGQSVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF C ++ EAR C ++VLWLDCD+EG
Sbjct: 62 MSLDFI-------GCG----------------------CVQVEARGCDFVVLWLDCDKEG 92
Query: 129 ENIAFEVIEVCRAVNCHLVLR-----RARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ + V +R RA+FS++ D +I A+ L PN+ A +VDARQ
Sbjct: 93 ENICFEVLDAVQPVMNKGGVREQTVFRAKFSSITDTDIWNAMNRLEKPNKNEALSVDARQ 152
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 153 ELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 208
Query: 244 EFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + K ++G T W R +FD + + A V V Q+EK K P
Sbjct: 209 TYWILQAKVFKGKDGPLTLDWSRVRVFDREVGQMFVNLAKMSKEAKVEAVSQKEKTKQRP 268
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 269 QALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTQYPENFDLKGTLRQQA 328
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
P W + LL +AGL N G+D HPP + S S D ++LYE +
Sbjct: 329 NSPMWAEEVKALL--SAGL--NRPRKGNDVGNHPPQDLIRIVLCCSAGS-DGWRLYEYIT 383
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTY 478
RHF+A VSQ ++ +E +I E FS G+ ++ Y + W G+ +PT
Sbjct: 384 RHFIATVSQDCRYLQSTIEFSIGTERFSCGGKTPISPGYTALM---PWQGVPLEEALPTC 440
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G F L L T PP L+EA+L++ M+K GIGTDA++ HI + R Y +
Sbjct: 441 QPGDAFTVDELRLVERQTGPPDYLTEAELITLMEKHGIGTDASIPVHINNVCQRNYVTVE 500
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKP 566
R PTN+G LV GY + + L +P
Sbjct: 501 TGRRLKPTNLGVVLVHGYYKIVFVLIEP 528
>gi|393909566|gb|EFO21893.2| DNA topoisomerase III beta-1 [Loa loa]
Length = 859
Score = 329 bits (843), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 223/684 (32%), Positives = 336/684 (49%), Gaps = 46/684 (6%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
P+ V+ VAEKP +A+S+A IL+ + + R+G + + E+ +GQ +TS G
Sbjct: 3 PLTVMMVAEKPMLAESIAKILADGK-VEKRKGWNNVCSVSEYCGQFQGQSALFKVTSTCG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M LDF + W DP L+ + K K + + L EA+ C +LVLWLDCD+
Sbjct: 62 HIMSLDFPSKMNNWEKVDPVQLFSSSTVKREANPKMRMNEYLASEAKGCDFLVLWLDCDK 121
Query: 127 EGENIAFE-----VIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
EGENI FE ++ + RA FSA+ ++I A++NL PN + +VDA
Sbjct: 122 EGENICFEPLSTLILGSIQMGGGRGGEGRAHFSAITAKDIKSAMRNLGRPNINESLSVDA 181
Query: 182 RQEIDLRIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
RQE+DLRIG +FTRFQT K ++DS T +S+GPCQ PTLGF V R+ I
Sbjct: 182 RQELDLRIGCAFTRFQTQYFQGKYGNLDSTT------ISFGPCQTPTLGFCVTRHDLITQ 235
Query: 240 HESEEFWTINCSHKSEEGTATFSW-MRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
E E +W + ++ G +G +FD + ++ ++ V V E
Sbjct: 236 FEPESYWVLETVFETSAGDNLKPIHAKGRIFDKDVCQLFFDRIKKQNQGVVVDVDSSEFR 295
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
K P L+T+EL + AS +S TM AE LY GFISYPRTET ++ S + +
Sbjct: 296 KERPQALNTVELLRVASSGLGLSPAQTMNTAEYLYTRGFISYPRTETTAYPSNFDFSEAL 355
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
+ Q W ++LL RN G D HPPI P + + G + D K+Y
Sbjct: 356 RHQQNDIRWKDIVKKLLSEGITTPRN----GEDKGDHPPISPLRGNDGS--LTGDALKVY 409
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
+ + +HF+A + +P T V+I+IA EVF + I+ Y ++ ++ I
Sbjct: 410 DYIAQHFIATLMKPCTYLVTSVKIDIANEVFIAKSKCIINLGYTEIMVWQK-----IEED 464
Query: 479 VHGQQFIP-TTLTLDSG-----VTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+ T + L G T PP L+E++L+S M+K GIGTDA++ HI + R
Sbjct: 465 PQNYNIVKGTKVNLKDGKICEYATTPPDYLTESELISLMEKHGIGTDASIPVHISNICQR 524
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y ++ R PT +G ALV GY + EL P +RS +ES + ++ G V +
Sbjct: 525 NYVTVESRRRLKPTKLGIALVHGYWKIDSELVLPTMRSEVESQLNLIAKGYADFCSVKNH 584
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAA-GEVVRQCGICQESNMVLKKS 651
L+ RLK + +E +G+ + AA G+ +CG C+ M L S
Sbjct: 585 VLENF-------RLKFIYFVENIGLVDSLFEDSFTSLAASGKPFSRCGKCRRF-MKLVAS 636
Query: 652 RDGNLMVGCLAFPQCRNAVWLPGS 675
+ L P C++ LP +
Sbjct: 637 KPQRLHC-----PNCQDTYSLPSA 655
>gi|294495508|ref|YP_003542001.1| DNA topoisomerase [Methanohalophilus mahii DSM 5219]
gi|292666507|gb|ADE36356.1| DNA topoisomerase [Methanohalophilus mahii DSM 5219]
Length = 776
Score = 328 bits (841), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 227/690 (32%), Positives = 356/690 (51%), Gaps = 44/690 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ ++ AEK A +A ILS R + +++ +G ++ + GH
Sbjct: 1 MTIVVFAEKNKAAAKLATILSGGNSTR-----EHVADLPVYSFVAKGDEYKII--GLAGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ DFD YR W + DPA L A K++ KK+ ++ + + A++ +VL D DRE
Sbjct: 54 ITSYDFDPAYRDWKAIDPAVLLTADPIKNI--TKKNYERAVRQLAKQADSIVLACDYDRE 111
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI FE ++ V + ++RARFS+L E+ +A NLV+P+ A + D RQ +DL
Sbjct: 112 GENIGFEARDIALQVK-KVPVKRARFSSLSANEVQKAFNNLVEPDTNLALSADTRQILDL 170
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+GA+FTRF T+ ++ ++ T + +LS GPCQ PT GFV ER I+ + E+FW
Sbjct: 171 RMGAAFTRFMTLAVRE---EAYTKN---ILSIGPCQTPTCGFVYEREKTIRDFQPEDFWK 224
Query: 248 INCSHKSEEGTATFSWM--RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
I ++ G++ F + +G++ D A IYE A V ++ +EK PPYPL
Sbjct: 225 IEAVFQA--GSSEFEGVHRKGNIRDVELAKKIYEKLQGTREAIVFRLNIKEKQINPPYPL 282
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T E KRAS++ +S E +++AE LY AGFISYPRTET+ + + +++ +
Sbjct: 283 NTNEFLKRASKFLDISPEKALEIAEQLYLAGFISYPRTETNRYPEDHDFKSMLKNLLRID 342
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWS----QDHYKLYELV 421
++ P+A+ LL RN GHD HPPIHP K S + + + +K+Y+L+
Sbjct: 343 EYAPFAENLLKTTVS-PRNGKKDGHD---HPPIHPIKAVSEKQIKNAVKLDNSWKVYDLI 398
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VRHFLA + PA+ +T +E+++ E F G V+ ++ + VY FE ++P G
Sbjct: 399 VRHFLANLMDPALFEKTHMEVHVKDEPFDCKGSVMKSEGWKQVYPFEISKEKLLPHVQEG 458
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR-FYAIKDAN 540
+ LT T PP L+EA+LL+ MDK GIGT AT HI+ R ++ IK
Sbjct: 459 DKVAVNKLTNTKSQTTPPKRLTEAELLTLMDKHGIGTKATAPSHIETNKKRGYFEIKGKT 518
Query: 541 TRFAPT--NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
T N+ +AL + L +P +R+ +E +++V G KS + ++ ++
Sbjct: 519 ISMLDTGFNLMDALGVSVPI----LIQPEIRAKIEGLIEDVEKGIKSFDEAISEGTVLIQ 574
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGG-EDQQAAGEVVRQCGICQESNMVLKKSR-DGNL 656
+ RLK K G R +G +D++ A + G C + L R D
Sbjct: 575 KMY--TRLKSGK-----GDIVLRIAGSIKDEKLAEDKKNHIGKCDKCGRTLSIIRTDKGR 627
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
VGC +PQCRN LP S + + C
Sbjct: 628 FVGCSGYPQCRNTYPLPRKGSLDVMRSREC 657
>gi|429966189|gb|ELA48186.1| hypothetical protein VCUG_00424 [Vavraia culicis 'floridensis']
Length = 849
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 204/630 (32%), Positives = 322/630 (51%), Gaps = 82/630 (13%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LN+AEKPSVAKS+ + + +Y +++F Y+ + TSV GH
Sbjct: 1 MKILNIAEKPSVAKSITRTIVNTSS--TGHTKYKYTPVHKFVYNSDAH----VFTSVLGH 54
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L +F E RKW CDP L+ + +++ ++ + +K+ L+ + +V+W DCDRE
Sbjct: 55 LYTQEFTEN-RKWTECDPIALFTTNITEYIKDEFRALKENLQHLSASADKVVIWTDCDRE 113
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE IA E+ ++ C RARFSA+ EI +A+++ + + D+V AR E+DL
Sbjct: 114 GEYIALEIQKLL-GRQCW----RARFSAITRDEIIRAMESYREIDTKQCDSVAARMELDL 168
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGASFTR QT+ ++ D+N V+SYG CQ PTLGFVVER E + +E+F+T
Sbjct: 169 RIGASFTRLQTL--------NLAADKN-VISYGSCQIPTLGFVVERALERKDFVAEKFFT 219
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT-ATVTKVRQQEKLKYPPYPLS 306
+ S + FSW+RG++FD + + E + A VT V + ++ P PL
Sbjct: 220 LKISIVKDRMVNIFSWVRGNIFDKNCVLYFFRYLTDETSKAVVTNVNKGNVTRFRPLPLR 279
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+++++ S+ M S M+VAE LYQ G ISYPRTETDSF + + + + E +
Sbjct: 280 TVDMQRVLSK--SMPSHKVMQVAEALYQRGIISYPRTETDSFPANFDYNKVKTEILKGNR 337
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ ++ P +G ++D AH PI+P K S + D +Y + F+
Sbjct: 338 YNV--------QNTTFKGPRNGRNNDFAHLPIYPLKHPSN---LAVDEKMVYNFIADRFI 386
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ---- 482
A +S A+ E +V +++ E F+ G I+ +L Y + I + G+
Sbjct: 387 ASISDDALLEEHVVHLSMKDENFTLKGTKIVKHGFLKFYHHDRVSEKNIGVFREGERFEI 446
Query: 483 ------------------------------------------QFIPTTLTLDSGVTRPPP 500
QF ++ ++ G+T+PP
Sbjct: 447 SRMDSIYPLGEDSRTKPDNEHDNTSGNADMVDRLQNMSKCEPQFKQNSIFVNEGLTKPPN 506
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
L+E++L++ MDK GIGTDAT+H+HIKK+LDR Y K A F PTN+G L+ Y +
Sbjct: 507 YLTESELIALMDKNGIGTDATIHEHIKKILDRKYTFKKAKY-FIPTNLGHGLICCYKTLD 565
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVL 590
L KP+ R +E +K++ +GN K V+
Sbjct: 566 LNLDKPDYRRELEKSLKDIELGNIDKESVI 595
>gi|426247933|ref|XP_004017724.1| PREDICTED: DNA topoisomerase 3-beta-1 [Ovis aries]
Length = 709
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 198/513 (38%), Positives = 286/513 (55%), Gaps = 18/513 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E++ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIARILSRG-SMSSRKGLNGACSVHEYSGAFEGQPARFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K + K L+ E R C +VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDRVDPAELFSQAPTEKKEANPKLSMVKFLQVEGRGCDCIVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V + + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMKQTHSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + +S + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVRSSCLRSLLLDWDRVRVFDREVAQMFLNMTRLEEEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQTAERLYTQGYISYPRTETTHYPESFDLKGPLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A GL N GHD HPPI P K S+ E+ + ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGL--NRPRKGHDAGDHPPITPMK-SATEAELGGEAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ V I E F+ +G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSSVSFRIGPERFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK 513
G + L T PP L+EA+L++ M+K
Sbjct: 473 GDTLAVAEVKLLEKQTSPPDYLTEAELITLMEK 505
>gi|118383692|ref|XP_001025000.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89306767|gb|EAS04755.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 1386
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 225/697 (32%), Positives = 343/697 (49%), Gaps = 56/697 (8%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A+S+A L G R+G +++ ++ F I G+ + +TSV GH
Sbjct: 242 VTVLMVAEKPSIARSIAEALG-GAGFTTRKGICKFSNVFTFYGHIFGKKALIKVTSVIGH 300
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ DF + Y+ W DP L++A K I + L++EA +L+LWLD DRE
Sbjct: 301 IYTSDFTQEYQDWRRVDPYKLFNATTLKKETNPNSQIIQHLQKEAMGASYLILWLDNDRE 360
Query: 128 GENIAFEVIEVCRAVNCHLV------LRRARFSALIDREIHQAVQNL-VDPNQWFADAVD 180
GENI FEV+ +C+ L+ + RA+FS++ +I +A L + PN + AVD
Sbjct: 361 GENICFEVLTICKP---ELIKEDFQQIFRAKFSSITPIDIRKAFDELSIGPNFNESQAVD 417
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
ARQ IDL++G +F+RFQT L + D N +++GPCQ PTL F V+R EI+
Sbjct: 418 ARQIIDLKVGVAFSRFQTRYL----VRKYEDLNNKKITFGPCQTPTLSFCVQRDDEIKDF 473
Query: 241 ESEEFWTI--NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
S+ F+ I S E W + +D A+ + + +V KV +E
Sbjct: 474 ISKPFYRIIPKISLVPNE-LINLEWTKERTYDQQEALDVKQELESIGQTSVVKVDNKETQ 532
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET----DSFSSGTNL 354
K P L+T+ K AS+ + + ++ M+VAE LY GFI+YPRTE+ D F + L
Sbjct: 533 KIKPVALNTVNFLKMASKQYGLGPQNAMQVAEKLYLGGFITYPRTESTKYPDKFDFNSVL 592
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
H + Q + YAQ+L + R G D HPPI PT + S+D
Sbjct: 593 HAVCQYHQNQ-NISIYAQKLQQNGIHKSR----LGKDVGDHPPITPTN-KIMRQQLSRDE 646
Query: 415 YKLYELVVRHFLACVSQP-----------------AVGAETIVEINIAGEVFSTSGRVIL 457
+YELV RHFLA VS V + FS G ++
Sbjct: 647 QNIYELVCRHFLATVSSDCRLYKKKVNFYCKIYFYQTKKNNKVLFQTGNQTFSLIGTAVI 706
Query: 458 AKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
K YL+ ++ IP + G Q ++ + SG T+PP L+E+DL+S M++ GIG
Sbjct: 707 DKGYLEALPWQKIYENEIPNFSEGDQIYLHSVDIHSGKTQPPDHLTESDLISLMEQNGIG 766
Query: 518 TDATMHDHIKKLLDRFYA-IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDM 576
TDA+M HI+ + DR Y + R PT +G +L+ Y ++ EL PNLRS +E +
Sbjct: 767 TDASMAQHIQNICDREYVQVVGQARRLVPTELGSSLIHAYAEIDPELVAPNLRSSIERSV 826
Query: 577 KEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVR 636
+S G K VL + ++ K +L + KV +L+ F + E + +
Sbjct: 827 DLISQGELDKDQVLQSVIELFKNKYL-YFVSKVGVLDKY--FDPIYQSIETTISQAQYFT 883
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
+CG C+ + +L K +G + +C+ LP
Sbjct: 884 KCGRCKCNMKILDK-------IGKIFCERCKFMYGLP 913
>gi|440494418|gb|ELQ76798.1| DNA topoisomerase III alpha [Trachipleistophora hominis]
Length = 848
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 217/645 (33%), Positives = 326/645 (50%), Gaps = 88/645 (13%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +LN+AEKPSVAKS+ ++ + + +Y +++F Y+ L TSV GH
Sbjct: 1 MKILNIAEKPSVAKSITRTIASSAS--AARTKYKYTPVHKFTYNSDAH----LFTSVLGH 54
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L +F + RKW CDP L+ A + +++ ++ K +K+ L + +V+W DCDRE
Sbjct: 55 LYTQEFTDN-RKWTECDPLTLFTADITEYIKDEFKALKENLLHLSTGVDKVVIWTDCDRE 113
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE IA E+ ++ C RARFSA+ EI +A++N + + D+V AR E+DL
Sbjct: 114 GEYIALEIQKLLNR-KCW----RARFSAITRDEIVRAMENFQEIDMRQCDSVAARMELDL 168
Query: 188 RIGASFTRFQTMLL---KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
RIGASFTR QT+ L KN V+SYG CQ PTLGFVVER E + +E+
Sbjct: 169 RIGASFTRLQTLNLAAHKN------------VVSYGSCQIPTLGFVVERALEHKKFVAEK 216
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT-VTKVRQQEKLKYPPY 303
F+T+ + T FSW RG++FD + + E T VT V ++ +Y P
Sbjct: 217 FFTLKICIVKDRHTNIFSWTRGNVFDKNCVLYFFRYLTDELAGTVVTGVEKKSVTRYRPL 276
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL T++++K SR M S M+VAE LYQ G ISYPRTETD F + I E +
Sbjct: 277 PLRTVDMQKILSR--SMPSHRIMQVAETLYQRGIISYPRTETDCFPRNFEYNRIKTEILK 334
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
A R + A +R P SG ++D AH PI+P K + + D K+Y +
Sbjct: 335 -------AGR-HNVANTAFRGPRSGRNNDFAHLPIYPLK---NPANLTADEKKVYNFIAD 383
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F+A VS+ A+ E +V + + E F G ++ +L Y + G I + G++
Sbjct: 384 RFIASVSEDALLEEHVVHLRMKDEHFVLKGTKVVKHGFLKFYHHDRVGEKDISVFREGER 443
Query: 484 F-----------------------------------IPTTLT-----------LDSGVTR 497
F P TL ++ G T+
Sbjct: 444 FELSKIERICSLGEDEKDKPGNDRDDASEDVIIVNEAPGTLRDEHRMNKNCIFVNDGTTK 503
Query: 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
PP L+E++L++ MD+ GIGTDAT+H+HIKK+LDR Y K PTN+G +L+ Y
Sbjct: 504 PPNYLTESELIALMDRNGIGTDATIHEHIKKILDRKYVSKRTKY-LVPTNLGYSLICCYK 562
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
+G L +P+ R +E +K++ G + +V+ L+ K +L
Sbjct: 563 TLGLNLERPHYRRDLEKSLKDIEQGVVDRMNVVERELECYKRFYL 607
>gi|340508777|gb|EGR34411.1| hypothetical protein IMG5_012580 [Ichthyophthirius multifiliis]
Length = 789
Score = 326 bits (836), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 206/628 (32%), Positives = 328/628 (52%), Gaps = 29/628 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL V EKPS+AK++A LS R R+G S+Y ++EF +I Q + +TSV GH+
Sbjct: 56 VLMVTEKPSIAKTLAEALSDGSS-RQRQGYSKYLPVHEFQGNIFNQNAFIRITSVAGHVY 114
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDF Y W DP +L+ A +K ++ + K LE+E++ C +LVLWLD DREGE
Sbjct: 115 SLDFTRDYSNWDRTDPIELFKAKTQKIESNPQQKVIKHLEQESKDCSYLVLWLDNDREGE 174
Query: 130 NIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVD-PNQWFADAVDARQ 183
NI FEV +C + L RA+FS+L +++ +A Q ++D PN AVDARQ
Sbjct: 175 NICFEVKRICEPQMIKENTNKLQTLRAKFSSLTKKDLKEAYQKIIDPPNLNDCLAVDARQ 234
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
IDL++G +F+RFQT + + D +++YGPCQ PTLGF V R EI++ + +
Sbjct: 235 IIDLKVGVAFSRFQTTYFRKKY----PDLNEKMITYGPCQTPTLGFCVRREDEIKSFKPK 290
Query: 244 EFW--TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
F+ I K E+ + G++F+ A + +++ V V ++ +K
Sbjct: 291 LFYRLLIQFRKKDEQIDTQAVFENGNIFNQQEANSLLTKIIKQKEGQVFDVFSEKGIKGR 350
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE- 360
P L+T++L K S Y +S + TM VAE LY GFI+YPRTE+ S++ I +
Sbjct: 351 PEGLNTVQLLKMGSSYLHLSPQQTMHVAEKLYLQGFITYPRTESTSYAKNFPFEDICRSL 410
Query: 361 -QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
Q+ + AQ L + G+++ G D HPPI PT + ++ + LYE
Sbjct: 411 CQLKNSQVSQDAQLLFRN--GIYK--PKQGVDIGDHPPITPTNYVPSNNQLRNEESNLYE 466
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT-Y 478
V +HF+A +S ++ + IN+ G F +G I+ K ++++ + S +P
Sbjct: 467 YVCKHFMASISADCSFMKSQISINVNGLNFKCTGVQIINKGFIEIMDWISISENNLPIGI 526
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA-IK 537
+ G + TT L+ PP L+E +L++ M+K IGTDA++ HI + +R Y I
Sbjct: 527 LKGNKVEITTTRLEQEYQTPPGYLTETELINLMEKNKIGTDASLATHINTICEREYVKIS 586
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
N + P+++G L+ GY + L P +RS +E+ + +++ G + N Q+
Sbjct: 587 GNNRQLIPSDMGRCLIKGYQLIDESLVLPEIRSQIENQVDQIAKGYSLFSSYYKNVEDQL 646
Query: 598 ------KACFLDARLKKVKLLEAMGIFF 619
C R +K++E G FF
Sbjct: 647 VQAKPFSKCGQCKRF--MKIIEKAGKFF 672
>gi|444732291|gb|ELW72593.1| DNA topoisomerase 3-beta-1 [Tupaia chinensis]
Length = 946
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 228/729 (31%), Positives = 342/729 (46%), Gaps = 114/729 (15%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGT-MSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 ME----------------------------------------------------LDFDER 76
M L +
Sbjct: 62 MTLDFIAVKGECSECRRACPQRSLSSCPCVTDNSSDNGVTKLGCVAKHVDPTLYLQLAGK 121
Query: 77 YRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEV 135
Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EGENI FEV
Sbjct: 122 YNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEV 181
Query: 136 IEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
++ +A + RARFS++ D +I A+ L +P+ A +VDARQE+DLRIG
Sbjct: 182 LDAVLPVMNKAHGSEKTVFRARFSSITDTDICNAMSRLGEPDHNEALSVDARQELDLRIG 241
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
FQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ + E +W +
Sbjct: 242 RG---FQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKPETYWVLQA 294
Query: 251 S-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVR---------------- 293
+ ++ + W R +FD A + + E A V R
Sbjct: 295 KVNADKDRSLLLDWDRVRVFDREIAQMFLNLTKSEKEAQVRLPRRAFFGVGTGLGDLCLE 354
Query: 294 -----------QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY--------Q 334
++EK K P L+T+E+ + AS M +H M+ AE LY
Sbjct: 355 EQLVPKVEAASRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQTAERLYTQGGPTTHT 414
Query: 335 AGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA 394
G+ISYPRTET + +L +++Q HP W +RLL A G+ N GHD
Sbjct: 415 QGYISYPRTETTHYPENFDLKASLRQQANHPHWADTVKRLL--AEGI--NRPRKGHDAGD 470
Query: 395 HPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGR 454
HPPI P + S+ E+ D ++LYE + RHF+A VS ++ + I E+FS SG+
Sbjct: 471 HPPITPMR-SATEAELGGDAWRLYEYITRHFIATVSYDCKYLQSSISFRIGPELFSCSGK 529
Query: 455 VILAKNYLDVYRFESWG-GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK 513
+++ + ++ ++S +PT G F + + T PP L+EA+L++ M+K
Sbjct: 530 TVISPGFTEIMPWQSVPLEESLPTCQRGDTFAVGEVKMLEKQTSPPDYLTEAELITLMEK 589
Query: 514 AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMME 573
GIGTDA++ HI + R Y ++ R PTN+G LV GY + EL P +RS +E
Sbjct: 590 HGIGTDASIPVHINNVCQRNYVTVESGRRLRPTNLGIVLVHGYYKIDAELVLPTIRSAVE 649
Query: 574 SDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGE 633
+ ++ G VL + L K F + E M + F + A G+
Sbjct: 650 KQLSLIAQGKADYRQVLGHTLDIFKRKFHYFVSSIAGMDELMEVSFSPLA------ATGK 703
Query: 634 VVRQCGICQ 642
+ +CG C
Sbjct: 704 PLSRCGKCH 712
>gi|167525962|ref|XP_001747315.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774150|gb|EDQ87782.1| predicted protein [Monosiga brevicollis MX1]
Length = 803
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 214/640 (33%), Positives = 315/640 (49%), Gaps = 70/640 (10%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+AKS+A ILS N R RS+ ++E++ GQ TSV GH+
Sbjct: 5 TVLMVAEKPSLAKSLAWILS-NHSATSRPSRSKSCTVHEYSGDFMGQQAQFKFTSVMGHV 63
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
M LDF +Y W P +L+ A K K +++ L E + +LVLWLDCDREG
Sbjct: 64 MSLDFLPQYNNWERTPPRELFDAETEKKDANPKAHVREALRSEGKGVDYLVLWLDCDREG 123
Query: 129 ENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV+++ R+V V RA+FSA+ +++I A++ LV PN+ + AVDARQ
Sbjct: 124 ENICFEVMDIVLPVMNRSVRGQTVF-RAKFSAITEKDIKAAMRTLVAPNENESLAVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLR+G +FTRFQT + F E
Sbjct: 183 ELDLRMGCAFTRFQTRFFQTF------------------------------------TPE 206
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+WTI+ + + G W R +FD + + +A V V ++EK K P
Sbjct: 207 RYWTIDLQLEHDSGFLRAQWERVRVFDQELGRVFTNRVQEASSARVVSVSEKEKKKPRPN 266
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S M ++ M +AE LY G+ISYPRTET ++ +L +++EQ
Sbjct: 267 ALNTVELMRVCSAGLGMGPQYAMAIAERLYMQGYISYPRTETTAYPENFDLVSVLKEQQN 326
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
P+WG + LL AG P GG D HPPI P + + ES D +++Y+LV R
Sbjct: 327 SPNWGKEVKELL---AGAMVQP-KGGKDVGDHPPITPMRVAQ-ESDLGGDDWRVYDLVTR 381
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HF+A +S T + ++ GEVF+ G L+ + V W G QQ
Sbjct: 382 HFIATLSPDCKYLTTTIVLDAGGEVFTIQGSRTLSPGFTAVMH---WVGSA------EQQ 432
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+P +L G T + +DL+S M+K GIGTDA++ HI + +R Y A
Sbjct: 433 TVP---SLPEGATLRIKSATLSDLISLMEKHGIGTDASIPVHINNICERNYVQIQAGRTL 489
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN--CLQQMKACF 601
PTN+G ++ GY + +L P +R+ +E + ++ G DVLA+ L Q K F
Sbjct: 490 VPTNLGIVMIHGYKTIDPDLCLPTMRAAVEKQLDLIAKGQAPFDDVLAHFKLLFQRKFEF 549
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+A + M FE ++ G+ + +CG C
Sbjct: 550 FEA------FISNMDQLFE--VTFTPLKSTGKQLSRCGKC 581
>gi|449678511|ref|XP_002155556.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Hydra magnipapillata]
Length = 843
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 208/639 (32%), Positives = 330/639 (51%), Gaps = 52/639 (8%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFN--YSIRGQPCHMLMTSVTGH 67
VL VAEKPSVAK +A LS R R G+SR N+I+EF + Q C +++TSV GH
Sbjct: 40 VLIVAEKPSVAKMIAEQLSGGH-FRTRRGKSRANQIFEFIKWFGPAQQKCKLMVTSVVGH 98
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKK--DIKKTLEEEARRCQWLVLWLDCD 125
+ L F R + D + L+ A V K + + K +I + L+E + ++L LWLDCD
Sbjct: 99 IFGLGFAGRPDR----DISKLFDASVEKQLADSTKKLNIVEHLQELGQESEYLFLWLDCD 154
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGENI FEVI + + + + RARFSAL E+ QA N V P+++ A +VDARQE+
Sbjct: 155 REGENIGFEVISLTQQWIPYDNVYRARFSALTKTELSQAYDNPVRPDKYAAMSVDARQEL 214
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DL+IG +F+R T + + V+SYGPCQ PTL F V+R+ EIQ +S F
Sbjct: 215 DLKIGVAFSRLMTRAFLDMAKEKFRLKDQKVVSYGPCQTPTLWFCVQRHKEIQNFKSTPF 274
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
+ ++ + T W+ + + + + + P A + V++ +K+ Y P L
Sbjct: 275 YVVSVVVNIQGQNITLKWVNDTVKNAEDLRQMESIIQRNPVAHIVDVKEDKKVVYKPIGL 334
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+ L K S+ F +S M +AE LY +G+ISYPRTET + +L G ++EQ+ +P
Sbjct: 335 NTVTLLKSCSKGFGISPTQAMNIAEHLYTSGYISYPRTETTRYPPTFDLVGTLEEQVNNP 394
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+WG A +L+ NP G D HPPI P + S+ + + +++Y+ V RHF
Sbjct: 395 NWGRIAAYILESGR---MNPSQKGFDVGDHPPITPMR-SANRDEFKPNEWRIYDYVTRHF 450
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY---VHGQ 482
+ + E + +++ G F I K ++ ++ G + +Y ++
Sbjct: 451 IGTLHDNMEYIEKKMLVDVNGFQFEYVWHEITDKGFMWAMPWKLKGLKLNESYMPPINML 510
Query: 483 QFIPT---TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA---- 535
Q + T D T+PP L E++L+S MDK GIGTDA++ HIK + DR Y
Sbjct: 511 QGLTTGVLNFLKDEKYTQPPDYLQESELISLMDKHGIGTDASIPTHIKNVQDRHYVDVCG 570
Query: 536 ----------IKD-----ANTR--------------FAPTNIGEALVMGYDDMGYELWKP 566
I++ N+R P G A + ++D+ EL +P
Sbjct: 571 PSEGGQRGQLIQENKFFGKNSRGKGQKQQPKALSRHMVPRGFGLAFLSCFEDLDKELCEP 630
Query: 567 NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
++R+ ME + +++ G K +V+++ L+ + F+ R
Sbjct: 631 SIRAYMEQQVSKIATGETDKNEVVSSNLKLFQQKFIYYR 669
>gi|118389870|ref|XP_001027980.1| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|89309750|gb|EAS07738.1| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 916
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 221/714 (30%), Positives = 360/714 (50%), Gaps = 48/714 (6%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
G+ VL VAEKPSVA+ +A LS N+ + R+G+ RY +Y + +GQ +TSV
Sbjct: 202 GQIQEVLLVAEKPSVARKIASALS-NKTSKKRQGKVRYLPVYVYEGRFKGQKTIFKVTSV 260
Query: 65 TGHLMELDFDERYRK-WHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
TGH+ +LDF ++ ++ W+ +P L+ + K +P K +I + LE EAR C +L+LWLD
Sbjct: 261 TGHVYDLDFPQKLKENWNEINPVQLFSSDTLK-IP-SKHNIVRHLESEARNCSYLLLWLD 318
Query: 124 CDREGENIAFEVIEVCRAVNC------HLVLRRARFSALIDREIHQAVQNLVDP-NQWFA 176
D+EGENI FEV ++C V C VLR RFS+L ++I +A DP N +
Sbjct: 319 NDKEGENICFEVKQICEKVMCFKGDNVQQVLR-TRFSSLTKQDIIKAFNGTTDPPNVNES 377
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
AVDAR+ IDL+IGASFTR+QT+ +N + D +S+GPCQ PTLGF VER +
Sbjct: 378 KAVDARRIIDLKIGASFTRYQTLFFRNKY----PDLNKRTISFGPCQTPTLGFCVEREDQ 433
Query: 237 IQAHESEEFWTINCSHK-SEEGTATFSWM-RGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
I+ + + + + S+ T ++ + A I++ E + V
Sbjct: 434 IKKFIPSLLYKVKLTLQGSDNKTQMLAYSEQKETLSKEKAQYIFQSIKLEKHIQIVSVSS 493
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
+ ++ P L+T+E+ K AS MS + TM AE+LY GFI+YPRTE+ ++SS N
Sbjct: 494 ETLVEECPVGLNTVEMLKAASSSLNMSPQQTMDAAENLYLKGFITYPRTESTAYSSSFNF 553
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF---SSGESRWS 411
++ ++G +AQ LL+ + + G+D + HPPI PT E S
Sbjct: 554 KKVLSSLQQDIEYGKFAQNLLNDGYIIPQ----KGNDTEDHPPITPTSNYPRPENEGLIS 609
Query: 412 QDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG 471
+LY+ + +HF+A + + + + F + + + Y V +
Sbjct: 610 PQEKQLYDYISKHFIASLYDDYEYKKLNITCQVKNYQFISEAIRVEKQGYTKVIKSTQLD 669
Query: 472 GLVIPTYV-HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLL 530
+I V +F ++++ + PP LSE++L+ M K IGTDA++ HI+ ++
Sbjct: 670 QNIIQIDVKQSSKFQIKNISIEEEYSSPPRYLSESELIDLMSKNSIGTDASIPTHIQNIV 729
Query: 531 DRFYA-IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV 589
DR Y I N PT +G +++ GY + EL P +R+ +E+ + +++ G+K + V
Sbjct: 730 DRKYVEIDQKNRTLIPTQLGRSIIDGYRKIDEELVSPQIRAQIENSVNQIAKGDKEFSQV 789
Query: 590 LANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK 649
L L + +++ + +G+F + + E Q A + + CG CQ ++
Sbjct: 790 LNESLGLFQNKYINFVYNIKNMDNLVGLFCKTYK--EVLQTAKPLSK-CGFCQSIMKFIE 846
Query: 650 KSRDGNLMVGCLAFPQCRNAVWLPGS----VSEAAVTTNTCNSCTPGPVYLIQF 699
+S V C +C +LP S +SE + C +IQF
Sbjct: 847 QSE----QVVC---QKCDIKFYLPKSGDLKISEDKI-------CLKDNFQIIQF 886
>gi|148665015|gb|EDK97431.1| topoisomerase (DNA) III beta, isoform CRA_b [Mus musculus]
Length = 469
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 184/462 (39%), Positives = 266/462 (57%), Gaps = 17/462 (3%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
G R VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTS
Sbjct: 3 GARMKTVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHKYTGTFAGQPVHFKMTS 61
Query: 64 VTGHLMELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
V GH+M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWL
Sbjct: 62 VCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWL 121
Query: 123 DCDREGENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
DCD+EGENI FEV++ V N + RARFS++ D +I A+ L +P+ A
Sbjct: 122 DCDKEGENICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEAL 181
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
+VDARQE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +I
Sbjct: 182 SVDARQELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKI 237
Query: 238 QAHESEEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
Q+ + E +W + H +E + W R +FD+ A + M E A V ++E
Sbjct: 238 QSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQMFLNMTKLEKEAWVEATSRKE 297
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K K P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G
Sbjct: 298 KAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKG 357
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
+++Q HP W ++LL A G+ N GHD HPPI P K S+ E+ D ++
Sbjct: 358 SLRQQANHPYWADSVKQLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWR 412
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
LYE + RHF+A VS ++ + I E F+ G+ +++
Sbjct: 413 LYEYITRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVIS 454
>gi|21226285|ref|NP_632207.1| DNA topoisomerase III [Methanosarcina mazei Go1]
gi|20904529|gb|AAM29879.1| DNA topoisomerase III [Methanosarcina mazei Go1]
Length = 832
Score = 322 bits (825), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 220/686 (32%), Positives = 346/686 (50%), Gaps = 34/686 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIR-EGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+ V+ AEK A +A IL + + +I EG YEF + +G+ L+ ++G
Sbjct: 1 MTVVAFAEKNKAAAQIASILGEGEVDKISVEGLP----AYEFKW--KGE--EWLVMGLSG 52
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M DF E+Y KW DP L K V +K+ + ++ A+R ++L D DR
Sbjct: 53 HIMNYDFPEKYNKWSEVDPGTLLGVDPEKFV--TRKEYEAAIKNLAKRADKIILACDYDR 110
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE + V + + RARFSAL +E+ +A +N VDP+ A A +ARQ +D
Sbjct: 111 EGENIGFEAKTLAEEVT-DVPVARARFSALSPKEVRKAFENPVDPDHNLAMAAEARQILD 169
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L++GA+FTRF T+ ++ + T D VLS GPCQ PT GFV ER I+A E+++FW
Sbjct: 170 LKMGAAFTRFVTLSVRE---KARTKD---VLSIGPCQTPTCGFVYEREKAIRAFEAKDFW 223
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I ++ G + G++ D A I++ V K +E PP PL+
Sbjct: 224 KITAVFAAKGGEFEGTHRAGNIHDKEKAAEIFKRLKGAKEGLVVKKTVKEAKTSPPNPLN 283
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T E KRAS++ +S E ++ AE LY AGF SYPRTET+ ++ + +V + +
Sbjct: 284 TTEFLKRASKFLGISPEVALETAEQLYLAGFTSYPRTETNKYADDFDFKSLVFDFARQKE 343
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GESRWSQD---HYKLYELVV 422
+ P+A+ +L P +G D HPPIHP + ++ GE + + ++Y+L+
Sbjct: 344 YKPFAESILSAPI----VPKNGEKDAHDHPPIHPIRAAARGEVSSAVNIPQAAEVYDLIA 399
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLA + AV +T + + + E F +SG V+ +L+VY FE+ ++P +
Sbjct: 400 RHFLANLMPAAVFEKTHLHLQVKEEPFDSSGTVLKEPGWLEVYPFENKKDKLLPFVEEKE 459
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ L+ T PP L+EA+LL+ MD+ GIGT AT HI+ R Y ++
Sbjct: 460 RVDVKKLSNTKSKTSPPKKLTEAELLTLMDRHGIGTKATAPTHIETNKKRGY-FENKGKT 518
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
+ + G L+ G L KP++RS +E+ ++EV G K LA+ +K +
Sbjct: 519 ISILDTGFTLMEGLSLSVPILVKPDIRSKIEALIQEVEDGKKEFEAALADGTVLIKEMYA 578
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK-KSRDGNLMVGCL 661
K +L + + + ED++ G C+ VL+ D VGC
Sbjct: 579 QLEANKKELTSNIAGTIKDEAALEDKK------NYIGTCKACGHVLRIIQTDSGRFVGCT 632
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCN 687
+P CRN+ LP + + + + C
Sbjct: 633 GYPDCRNSFSLPKTGALTVLRSKECK 658
>gi|452208804|ref|YP_007488918.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
gi|452098706|gb|AGF95646.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
Length = 832
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 219/686 (31%), Positives = 346/686 (50%), Gaps = 34/686 (4%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIR-EGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+ V+ AEK A +A IL + + +I EG YEF + +G+ L+ ++G
Sbjct: 1 MTVVAFAEKNKAAAQIASILGEGEVDKISVEGLP----AYEFKW--KGE--EWLVMGLSG 52
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M DF E+Y KW DP L K V +K+ + ++ A+R ++L D DR
Sbjct: 53 HIMNYDFPEKYNKWSEVDPGTLLGVDPEKFV--TRKEYEAAIKNLAKRADKIILACDYDR 110
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE + V + + RARFSAL +E+ +A +N VDP+ A A +ARQ +D
Sbjct: 111 EGENIGFEAKTLAEEVT-DVPVARARFSALSPKEVRKAFENPVDPDHNLAMAAEARQILD 169
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L++GA+FTRF T+ ++ + T D VLS GPCQ PT GFV ER I+A E+++FW
Sbjct: 170 LKMGAAFTRFVTLSVRE---KARTKD---VLSIGPCQTPTCGFVYEREKAIRAFEAKDFW 223
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I ++ G + G++ D A I++ V K +E PP PL+
Sbjct: 224 KITAVFAAKGGEFEGTHRAGNIHDKEKAAEIFKRLKGAKEGLVVKKTVKEAKTSPPNPLN 283
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T E KRAS++ +S E ++ AE LY AGF SYPRTET+ ++ + +V + +
Sbjct: 284 TTEFLKRASKFLGISPEVALETAEQLYLAGFTSYPRTETNKYADDFDFKSLVFDFARQKE 343
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GESRWSQD---HYKLYELVV 422
+ P+A+ +L P +G D HPPIHP + ++ GE + + ++Y+L+
Sbjct: 344 YKPFAESILSAPI----VPKNGEKDAHDHPPIHPIRAAARGEVSSAVNIPQAAEVYDLIA 399
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLA + AV +T + + + E F +SG V+ +L+VY FE+ ++P +
Sbjct: 400 RHFLANLMPAAVFEKTHLHLQVKEEPFDSSGTVLKDPGWLEVYPFENKKDKLLPFVEEKE 459
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ L+ T PP L+EA+LL+ MD+ GIGT AT HI+ R Y ++
Sbjct: 460 KVDVKKLSNTKSKTSPPKKLTEAELLTLMDRHGIGTKATAPTHIETNKKRGY-FENKGKT 518
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
+ + G L+ G L +P++RS +E+ ++EV G K LA+ +K +
Sbjct: 519 ISILDTGFTLMEGLSLSVPILVRPDIRSKIEALIQEVEDGKKEFEAALADGTVLIKEMYA 578
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK-KSRDGNLMVGCL 661
K +L + + + ED++ G C+ VL+ D VGC
Sbjct: 579 QLEANKKELTSNIAGTIKDEAALEDKK------NYIGTCKACGHVLRIIQTDSGRFVGCT 632
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCN 687
+P CRN+ LP + + + + C
Sbjct: 633 GYPDCRNSFSLPKTGALTVLRSKECK 658
>gi|312079442|ref|XP_003142175.1| DNA topoisomerase III beta-1 [Loa loa]
Length = 871
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 224/697 (32%), Positives = 337/697 (48%), Gaps = 60/697 (8%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
P+ V+ VAEKP +A+S+A IL+ + + R+G + + E+ +GQ +TS G
Sbjct: 3 PLTVMMVAEKPMLAESIAKILADGK-VEKRKGWNNVCSVSEYCGQFQGQSALFKVTSTCG 61
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M LDF + W DP L+ + K K + + L EA+ C +LVLWLDCD+
Sbjct: 62 HIMSLDFPSKMNNWEKVDPVQLFSSSTVKREANPKMRMNEYLASEAKGCDFLVLWLDCDK 121
Query: 127 EGENIAFE-----VIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
EGENI FE ++ + RA FSA+ ++I A++NL PN + +VDA
Sbjct: 122 EGENICFEPLSTLILGSIQMGGGRGGEGRAHFSAITAKDIKSAMRNLGRPNINESLSVDA 181
Query: 182 RQEIDLRIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
RQE+DLRIG +FTRFQT K ++DS T +S+GPCQ PTLGF V R+ I
Sbjct: 182 RQELDLRIGCAFTRFQTQYFQGKYGNLDSTT------ISFGPCQTPTLGFCVTRHDLITQ 235
Query: 240 HESEEFWTINCSHKSEEGTATFSW-MRGHLFDYTSAVIIYEMCVQEP------------- 285
E E +W + ++ G +G +FD + ++ ++ P
Sbjct: 236 FEPESYWVLETVFETSAGDNLKPIHAKGRIFDKDVCQLFFDR-IKAPYHDSYCSGFQKQN 294
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
V V E K P L+T+EL + AS +S TM AE LY GFISYPRTET
Sbjct: 295 QGVVVDVDSSEFRKERPQALNTVELLRVASSGLGLSPAQTMNTAEYLYTRGFISYPRTET 354
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS 405
++ S + ++ Q W ++LL RN G D HPPI P + +
Sbjct: 355 TAYPSNFDFSEALRHQQNDIRWKDIVKKLLSEGITTPRN----GEDKGDHPPISPLRGND 410
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
G + D K+Y+ + +HF+A + +P T V+I+IA EVF + I+ Y ++
Sbjct: 411 GS--LTGDALKVYDYIAQHFIATLMKPCTYLVTSVKIDIANEVFIAKSKCIINLGYTEIM 468
Query: 466 RFESWGGLVIPTYVHGQQFIP-TTLTLDSG-----VTRPPPLLSEADLLSCMDKAGIGTD 519
++ I + T + L G T PP L+E++L+S M+K GIGTD
Sbjct: 469 VWQK-----IEEDPQNYNIVKGTKVNLKDGKICEYATTPPDYLTESELISLMEKHGIGTD 523
Query: 520 ATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEV 579
A++ HI + R Y ++ R PT +G ALV GY + EL P +RS +ES + +
Sbjct: 524 ASIPVHISNICQRNYVTVESRRRLKPTKLGIALVHGYWKIDSELVLPTMRSEVESQLNLI 583
Query: 580 SVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAA-GEVVRQC 638
+ G V + L+ RLK + +E +G+ + AA G+ +C
Sbjct: 584 AKGYADFCSVKNHVLENF-------RLKFIYFVENIGLVDSLFEDSFTSLAASGKPFSRC 636
Query: 639 GICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
G C+ M L S+ L P C++ LP +
Sbjct: 637 GKCRRF-MKLVASKPQRLHC-----PNCQDTYSLPSA 667
>gi|390351189|ref|XP_795949.3| PREDICTED: DNA topoisomerase 3-beta-1 [Strongylocentrotus
purpuratus]
Length = 954
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 202/564 (35%), Positives = 294/564 (52%), Gaps = 29/564 (5%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIE-----VCRAV 142
L+ AP + + K L E + C +LVLWLDCD+EGENI FEVI + R V
Sbjct: 175 LFAAPTERKEANPNLHMPKFLAIEGKGCDYLVLWLDCDKEGENICFEVISCVQGVMTRPV 234
Query: 143 NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLK 202
V+ RA+FSA+ D++I QA+ LV+PN+ A +VDARQE+DLRIG +FTRFQT +
Sbjct: 235 GREQVIFRAKFSAITDKDIRQAMNTLVEPNENEALSVDARQELDLRIGCAFTRFQTKYFQ 294
Query: 203 NFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG-TATF 261
+ D + ++SYGPCQ PTLGF V R+ +IQ+ + E FW I E G
Sbjct: 295 GKY----GDLDSTLISYGPCQTPTLGFCVNRHDKIQSFKPEPFWVIQIQVTHESGRKLNL 350
Query: 262 SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMS 321
W R +FD A + + + A +T V Q+EK K P L+T+EL + AS MS
Sbjct: 351 DWDRVRVFDREVAQMFLNIIKTQKDARITSVSQKEKAKQRPQALNTVELMRVASSSLGMS 410
Query: 322 SEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
H M++AE LY G+ISYPRTET S+ +L G +++Q+ P W + LLD G
Sbjct: 411 PHHAMQIAERLYIQGYISYPRTETTSYPESFDLKGTLRQQMSAP-WRSEVKVLLD---GE 466
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVE 441
+ P G D HPPI P + ++ ES + ++LYE + RHF+A VS T +
Sbjct: 467 FTKPRKGT-DVGDHPPITPMR-AANESEVGGEAWRLYEYIARHFIATVSPDCRYLLTTIR 524
Query: 442 INIAGEVFSTSGRVILAKNYLDVYRFESWGGLV----IPTYVHGQQFIPTTLTLDSGVTR 497
+ I E FS +G+ +++ + V W + +P G L T
Sbjct: 525 LMIGEEGFSCTGKTLISDGFTAVM---PWQAIQDEENLPNVTKGDMCSIEEAKLSERQTS 581
Query: 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
PP L+E++L+S M+K G+GTDA++ HI+ + R Y ++ R PT +G LV GY
Sbjct: 582 PPDYLTESELISLMEKHGVGTDASIPVHIENICQRNYVKVESGRRLVPTRLGIVLVHGYQ 641
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGI 617
+ +L P +RS +E + ++ G VL + + F L V ++AM
Sbjct: 642 KIDPDLSLPTMRSAVEEQLNLIAHGQADFNSVLIHTID----IFTRKFLYFVDHIQAMDD 697
Query: 618 FFERWSGGEDQQAAGEVVRQCGIC 641
FE A G+ + +CG C
Sbjct: 698 LFE--VSFSPLAATGKPMSRCGKC 719
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 113/200 (56%), Gaps = 32/200 (16%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKP +A+S+A ILS+ LR R G + ++E+ + RGQ MTSV GH+
Sbjct: 4 VLMVAEKPQLAQSLAKILSQG-SLRSRRGMNGACSVHEYTGTFRGQQAKFKMTSVCGHVH 62
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDF R+ W DP + C +LVLWLDCD+EGE
Sbjct: 63 GLDFHPRFNNWDKVDPG--------------------------KGCDYLVLWLDCDKEGE 96
Query: 130 NIAFEVIEVCRAVNC-----HLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
NI FEVI + V V+ RA+FSA+ D++I QA+ LV+PN+ A +VDARQE
Sbjct: 97 NICFEVISCVQGVMTRPTGREQVIFRAKFSAITDKDIRQAMNTLVEPNENEALSVDARQE 156
Query: 185 IDLRIGASFTRFQTMLLKNF 204
+DLRIG +FTRFQT + F
Sbjct: 157 LDLRIGCAFTRFQTKYFQLF 176
>gi|339245323|ref|XP_003378587.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
gi|316972491|gb|EFV56168.1| DNA topoisomerase 3-beta-1 protein [Trichinella spiralis]
Length = 819
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 211/628 (33%), Positives = 320/628 (50%), Gaps = 39/628 (6%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
MTS GH+M ++F ++Y W DPA L+HA V K K + L E R +LVL
Sbjct: 1 MTSTCGHVMTMNFPKKYNDWDRVDPATLFHADVIKEEANPKLKMVNFLASEGRGVDYLVL 60
Query: 121 WLDCDREGENIAFEVIEVCRAVNCH----LVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
WLDCD+EGENI FEVI++ + + H + RA+FS+L ++I +A+ L PN+ A
Sbjct: 61 WLDCDKEGENICFEVIDIVQPMMRHPYDQRAIYRAQFSSLAPQDILKAMSKLGRPNKLQA 120
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
+VD RQE+DLRIG +FTRFQT + FH D L+ SYGPCQ PTLGF V R E
Sbjct: 121 VSVDTRQELDLRIGCAFTRFQT---RFFHEKYGNVDSKLI-SYGPCQTPTLGFCVARLDE 176
Query: 237 IQAHESEEFWTINCSHKSEEG--TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
++ + E +W++ S+ G T T SW R LFD +++ ++ ATV V
Sbjct: 177 MKNFKPEPYWSMRAVVTSDGGGSTMTASWARQQLFDQEVFNVLFSRAKRQRFATVVSVTT 236
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
+K K P L+T+EL + S + + TM +AE LY G ISYPRTET ++S +
Sbjct: 237 TKKQKQKPAALNTVELLRVGSSRLHLGPQQTMHLAEHLYTNGLISYPRTETTRYASNFDF 296
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
H ++ + AQ +LD R P S G D HPPI P S
Sbjct: 297 HSVLGPLAKSGQFASVAQAILDRGV---RMPKS-GQDAGDHPPITPLGHVGEPKFTSTSE 352
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
+LYE VV HFLA + V +++++AGE F+ + + + +V+ +W +
Sbjct: 353 ARLYEYVVCHFLATLMGNCVYELRTIQLDLAGERFTLTSSRPIDPGFTEVF---TWQQVT 409
Query: 475 -----IPTYVH-GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKK 528
+P V+ G ++ L +D G T PP L+E +L++ M++ GIGTDA++ HI
Sbjct: 410 ANENSLPATVNVGDRWNVVDLLMDQGQTSPPDHLTETELITLMERHGIGTDASIPVHINN 469
Query: 529 LLDRFYA-IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKA 587
+ R Y +++++ R PT +G LV GY + +L + +RS +E + ++ G + A
Sbjct: 470 ICQRNYVTVQESSRRLVPTQLGVILVHGYWKIDCQLVEAEMRSAIEHQLMLIADGQANPA 529
Query: 588 DVLANCLQQMKACFLDARLKK----VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE 643
MK LD KK V+ + M FE + +G+ +CG C+
Sbjct: 530 S--------MKEHILDIFTKKFHYFVENVALMDALFE--DTFQTLADSGKPFSRCGRCRR 579
Query: 644 SNMVLKKSRDGNLMVGC-LAFPQCRNAV 670
++ + + C L +P R +
Sbjct: 580 YMKIVLQGKKRLFCATCQLTYPLPRGST 607
>gi|91772728|ref|YP_565420.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
gi|91711743|gb|ABE51670.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
Length = 780
Score = 318 bits (816), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 226/683 (33%), Positives = 332/683 (48%), Gaps = 42/683 (6%)
Query: 15 EKPSVAKSVAGILSKNQGLR-IREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDF 73
EK A ++ ILS R I +G S +YEF R +M + GH+M D+
Sbjct: 8 EKNKAAAQISTILSGGSAKRSIVDGVS----VYEFQ---RDGSLWKIM-GLAGHIMGYDY 59
Query: 74 DERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAF 133
E + W DPA L K + +K + + ++ LVL D DREGENI F
Sbjct: 60 PEEFHNWRDVDPAALLDTDPVKQI--NKASFGSAILKISKGADLLVLACDFDREGENIGF 117
Query: 134 EVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASF 193
E + V+ ++RARFS+L EI +A +LV+P++ A + +ARQ +DL++GASF
Sbjct: 118 EAKSIAEKVS-DATVKRARFSSLSKSEIEKAFNDLVEPDENMAMSAEARQILDLKMGASF 176
Query: 194 TRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHK 253
TRF T+ ++ VLS GPCQ PT GFV ER I+ +S +FW I
Sbjct: 177 TRFVTLSVRE------RARTKGVLSIGPCQTPTCGFVYERELAIRKFDSRDFWKIEGVFT 230
Query: 254 SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKR 313
+ GH++D A I++ TA ++K +E PP+PL+T E KR
Sbjct: 231 GKGADIIGVHRGGHIYDKEKAAAIFKKLKGCKTAVISKKTVKEMNTNPPFPLNTNEFLKR 290
Query: 314 ASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQR 373
AS+Y +S + +++AE LY +GF SYPRTET+ ++ + I++ D+ +A
Sbjct: 291 ASKYLGVSPDQALEIAEQLYLSGFTSYPRTETNMYADDMDFASILK-GFTKGDYQDFALL 349
Query: 374 LLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH-------YKLYELVVRHFL 426
LL A + RN GHD HPPIHP K SR + + +Y+L+VRHF+
Sbjct: 350 LLSQKAIVPRNGKKDGHD---HPPIHPIK---AGSRMEVERAIKMPRAWDVYDLIVRHFI 403
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A + PAV +T EI + E+F ++G + +L VY FE ++P G+
Sbjct: 404 ANLLPPAVFEKTRFEITMEDELFDSTGSIQKNAGWLAVYPFEKPQDKILPALDLGEVLDV 463
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+T T PP L+EA+LL+ MDK GIGT AT HI+ R Y T A
Sbjct: 464 KKITNIKSQTTPPKRLTEAELLTLMDKHGIGTKATAPSHIETNKKRGYFEVKGKT-IAIL 522
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+ G L+ + L KP++RS +ES +++V GNK L +K +
Sbjct: 523 DTGFTLMDALNSSVPILVKPDIRSSIESLIQDVEDGNKKFELALEEGTSLIKEMY----- 577
Query: 607 KKVKLLEAMGIFFERWSGG-EDQQAAGEVVRQCGICQESNMVLK-KSRDGNLMVGCLAFP 664
+LL + R +G D+ + G C E VL+ S D VGC +P
Sbjct: 578 --SQLLSNRDLMVTRIAGTITDEAVEADKKSHIGKCNECERVLRIVSTDKGRFVGCTGYP 635
Query: 665 QCRNAVWLPGSVSEAAVTTNTCN 687
QC+N LP + + A + TC
Sbjct: 636 QCKNTFPLPKTGALAVQRSRTCK 658
>gi|410669965|ref|YP_006922336.1| DNA topoisomerase [Methanolobus psychrophilus R15]
gi|409169093|gb|AFV22968.1| DNA topoisomerase [Methanolobus psychrophilus R15]
Length = 774
Score = 318 bits (816), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 222/688 (32%), Positives = 338/688 (49%), Gaps = 38/688 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
++++ EK A +AGILS+ G R+ I +++ G+ ++ ++GH
Sbjct: 1 MSIVVFTEKNKAAAQIAGILSEG-GF----NRASIEGIPVYDFKKDGKEWRIM--GLSGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M DF W CDPA L P K+V K+ + ++ ++L D DRE
Sbjct: 54 IMGYDFPPELNNWRGCDPAVLLDTPPVKNV--TKQPYAAAIALVSKGADEIILACDFDRE 111
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GENI FE + V+ V +RARFS+L + EI QA NLV+P+ A + +ARQ +DL
Sbjct: 112 GENIGFEAKSLAEKVSKSPV-KRARFSSLSESEIRQAFSNLVEPDFNLAMSAEARQILDL 170
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
++GA+FTRF T+ ++ + T D ++S GPCQ PT GFV ER I +S++FW
Sbjct: 171 KMGAAFTRFLTLAVQQ---RARTKD---IISIGPCQTPTCGFVYEREKLILDFKSKDFWK 224
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I + T + GH+ D A I+ T + K +E + PPYPL+T
Sbjct: 225 IEGTFSHSNIDFTGTHRSGHIHDKAKADEIFSRIKGSKTGILAKKSVKESITSPPYPLNT 284
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
E KRAS++ +S E+ +++AE LY +GF SYPRTET+ ++ + V ++
Sbjct: 285 TEFLKRASKFLGISPENALEIAEQLYLSGFTSYPRTETNKYADDFDFKMKVL-GFASGEY 343
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHP----TKFSSGESRWSQDHYKLYELVVR 423
YA +L RN GHD HPPIHP TK +S D +K+Y+LV R
Sbjct: 344 REYAMAILSRLPITCRNGTRDGHD---HPPIHPIRAATKADVEKSVRMPDAWKVYDLVAR 400
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HFLA + QPA+ +T +EI++ E+F +G V+ +L VY FE+ +P ++
Sbjct: 401 HFLANLMQPAIFEKTHLEISVKEEIFDATGSVMKNAGWLAVYPFETKNDKFLPDIAVKEE 460
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
L+ T PP L+EA+LL+ MDK GIGT AT HI+ R Y T
Sbjct: 461 IAIKKLSNTKSQTTPPKRLTEAELLTLMDKYGIGTKATAPSHIETNKKRGYFETKGKT-I 519
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN---CLQQMKAC 600
+ + G L+ D L KP++RS +E+ +++V G K L ++ M +
Sbjct: 520 SILDTGFTLMEALDSTVPILVKPDVRSRIEALIQDVEDGKKGFEGALEEGSVLIRDMYSH 579
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSR-DGNLMVG 659
+ R + V+ + D+Q A + G C E +L+ + D VG
Sbjct: 580 LITNREQIVRKMAGTIT---------DEQVAADKKNFIGQCPECGRMLRIVKTDKGRFVG 630
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
C +P CR LP + + CN
Sbjct: 631 CSGYPDCRKTYPLPKEGALVIARSKQCN 658
>gi|8918930|dbj|BAA97984.1| unnamed protein product [Mus musculus]
Length = 464
Score = 318 bits (815), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 182/457 (39%), Positives = 264/457 (57%), Gaps = 17/457 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V N + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + H +E + W R +FD+ A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQMFLNMTKLEKEAWVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADSVKQLL--AEGI--NRPWKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
RHF+A VS ++ + I E F+ G+ +++
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVIS 449
>gi|431914329|gb|ELK15587.1| DNA topoisomerase 3-beta-1 [Pteropus alecto]
Length = 779
Score = 318 bits (815), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 198/590 (33%), Positives = 300/590 (50%), Gaps = 53/590 (8%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
MTSV GH+M LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++V
Sbjct: 1 MTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIV 60
Query: 120 LWLDCDREGENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQW 174
LWLDCD+EGENI FEV++ V + RARFS++ D +I A+ L +P+
Sbjct: 61 LWLDCDKEGENICFEVLDAVLPVMNPAHGSEKTVFRARFSSITDTDICNAMARLGEPDHN 120
Query: 175 FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
A +VDARQE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+
Sbjct: 121 EALSVDARQELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERH 176
Query: 235 WEIQAHESEEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVR 293
+IQ+ + E +W + + ++ + W R +FD A + M E A V
Sbjct: 177 DKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKMEKEAQVEATS 236
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
++EK K P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +
Sbjct: 237 KKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFD 296
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQD 413
L G++++Q HP W ++LL GE+ W
Sbjct: 297 LKGLLRQQANHPYWADTVKQLLSEG---------------------------GEAWW--- 326
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-G 472
LYE + RHF+A VS ++ + I E F+ +G+ +++ + ++ ++S
Sbjct: 327 ---LYEYITRHFIATVSYDCKYLQSTISFRIGPEHFTCTGKTVISPGFTEIMPWQSIPLE 383
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+PT G F + + T PP L+EA+L++ M+K GI DA++ HI + R
Sbjct: 384 ESLPTCQRGDTFPVGEMKMLEKQTSPPDYLTEAELITLMEKHGI--DASIPVHINNICQR 441
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y + ++ R PTN+G LV GY + EL P +RS +E + ++ G VL +
Sbjct: 442 NYVVVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGH 501
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
L K F + E M + F + A G+ + +CG C
Sbjct: 502 TLDVFKRKFHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 545
>gi|119719794|ref|YP_920289.1| DNA topoisomerase [Thermofilum pendens Hrk 5]
gi|119524914|gb|ABL78286.1| DNA topoisomerase [Thermofilum pendens Hrk 5]
Length = 631
Score = 318 bits (814), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 216/634 (34%), Positives = 325/634 (51%), Gaps = 38/634 (5%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
VAEK SVA+++A L G +R R YEF + + L V+GH+++ D
Sbjct: 8 VAEKNSVARAIASFLG---GSSVRRFRVERVPAYEFLW----EGGKHLSIGVSGHILDFD 60
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIA 132
F E Y KW S DP L+ E + L+ AR+ ++L LD D EGE IA
Sbjct: 61 FPEEYNKWESVDPRVLFFTNPVLVTREGAYIYVRALKTLARQTSTVILALDADVEGEAIA 120
Query: 133 FEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGAS 192
FEV+ + ++VN L RRA FSA+ +I +A + L +PN+ A+ AR +DL IGAS
Sbjct: 121 FEVMRIMKSVNPELEFRRAWFSAVTKSDILEAFRKLREPNENLANKAFARMVVDLTIGAS 180
Query: 193 FTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSH 252
FTR T+ + + R LSYGPCQ P L VV+R E + + ++++ +
Sbjct: 181 FTRILTLSARR---NGGVMPRGSFLSYGPCQTPVLYLVVKRELEREQFKKKKYYVLRVRF 237
Query: 253 KSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEK 312
+S+EG T S D A + + V PP PL+T+ LE
Sbjct: 238 RSQEGVFTAS---ATFEDQEKAKSALDSVKRTGVGVVVSAEFNAVEVEPPVPLNTVYLES 294
Query: 313 RASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQ 372
RAS + + + T+ +AE LY G+ISYPRTET + NL GI D G Y
Sbjct: 295 RASLFLNLRPKETLSIAEKLYSFGYISYPRTETTIYPPTLNLRGIASMFTRWEDAGWYVA 354
Query: 373 RLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES---RWSQDHYKLYELVVRHFLACV 429
++L A G P G DDKAHPPI+PT+ +S E R+ + +K+YE VVRHFLA +
Sbjct: 355 KVL--AKGF--TPTRGREDDKAHPPIYPTRSASREEITRRFGEKAWKVYEYVVRHFLATI 410
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
S+ AV V + + + GR ++ + +VY++ +P V G++
Sbjct: 411 SENAVVERQRVVVKVGELSLQSEGRKLVYAGFYNVYKYSVPKDEPLPYVVEGEEVEVEDA 470
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+++ T+PPP LSE++LL+ M K GIGTDATM +HI ++R Y + N R PT +G
Sbjct: 471 KIEARTTQPPPYLSESELLALMKKYGIGTDATMQEHIHTNIERRYFVVK-NKRCIPTPLG 529
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD------ 603
L + + EL P +R ME+ + +++ G ++ +V + +M++ FL+
Sbjct: 530 RTLALALYETVPELVLPEVRGKMEASLSKIATGERTPEEV----VNEMRSEFLEYYDRLV 585
Query: 604 ARLKKV--KLLEAMGIFFERWSGGEDQQA-AGEV 634
R+ V K++E + + F+ E QQA AG V
Sbjct: 586 ERIDYVSKKIVEGLKMVFQ----DEKQQARAGSV 615
>gi|167393819|ref|XP_001740725.1| DNA topoisomerase 3-beta-1 [Entamoeba dispar SAW760]
gi|165895052|gb|EDR22857.1| DNA topoisomerase 3-beta-1, putative [Entamoeba dispar SAW760]
Length = 840
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 227/712 (31%), Positives = 350/712 (49%), Gaps = 37/712 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +L VAEKP +A+S+A LS ++ R+G + ++EFN +G+ MTSV GH
Sbjct: 1 MTLLMVAEKPLLAESIANFLSLGP-VKTRKGIAPSCPVHEFNCKFKGKITKAKMTSVAGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +F+ ++ W S DP DL++ V K K I L EA+ C LVLWLDCDRE
Sbjct: 60 VYTCEFERAFQNW-SVDPRDLFNCKVIKVEANPKTHIPSHLRNEAKGCNGLVLWLDCDRE 118
Query: 128 GENIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
GENI FEV+E + + RA FS++ ++I +A +L P++ A+AVD RQEID
Sbjct: 119 GENICFEVMENTVDYMTKTCKIYRALFSSITKKDITEAFNHLGQPDERLAEAVDCRQEID 178
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+G +FTR QT LK + D ++S+GPCQ PTLGF V+R EI S+ F+
Sbjct: 179 LRVGVAFTRLQTKFLKE-RFPKLGDS---LISFGPCQTPTLGFCVDRQKEIDNFVSKPFY 234
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
T+ + EG + FD S V + V K+ E K P L+
Sbjct: 235 TLKVILEDHEGRNK-TLKLDKCFDNKSDVDDIVKSCKGVQGKVIKMNVNELKKSRPIGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+E+ K AS + + TM++AE LY G+ISYPRTE+ +SS N I+
Sbjct: 294 TVEMLKAASIKLGLGPQDTMRIAEKLYTRGYISYPRTESTKYSSYFNFDDILNNLQETNQ 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ Q + + + RN G D HPPI P + + + KL++ + FL
Sbjct: 354 FREKVQLVKQNGINIPRN----GEDKGDHPPITPLNYPN--EYLNDSEKKLFDFITNTFL 407
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFE-----SWGGLVIPT-YV 479
A + + ++ + V I I F+ SG+V+ + + R++ L+ PT ++
Sbjct: 408 ASIYKDSIFQKVNVSIQIGNYTFNGSGKVLKDPGFKKIISRYDEDEEIKDSDLIKPTSFI 467
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G IP+ + G+T P L+E +L+S M+K GIGTDA++ HI+ ++ R Y D
Sbjct: 468 EGDIVIPSMFDIVKGMTTCPDYLTEYELISLMEKNGIGTDASIPVHIQNIITREYVSLDT 527
Query: 540 NTR-FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
+ R PT IG AL + + L P +R+ +ES + ++ G +VL L +
Sbjct: 528 SKRTLRPTKIGLALAKTLETVDKNLITPQIRAHIESMVSRIAEGKAQYENVLEEALDTFE 587
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMV 658
+L + + +K+LE E ++ Q + +CG C ++LK D
Sbjct: 588 QNYLIYK-QNLKVLE------ENFAPLYQVQEQSRLFSKCGKC--GRILLKVIGDQTY-- 636
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHE-IPPG 709
L+ P C LP +VS + T C C + K + E + PG
Sbjct: 637 --LSCPNCSLKFNLPQNVSYSQ-QTKCCPICKFETIMTSSLKSTKKEMVCPG 685
>gi|307103756|gb|EFN52014.1| hypothetical protein CHLNCDRAFT_27302 [Chlorella variabilis]
Length = 307
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/312 (52%), Positives = 212/312 (67%), Gaps = 11/312 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRS--RYNKIYEFNYSIRGQPCHMLMTSVT 65
+ VLNVAEK VA +V+ +LS R R+ S Y KIYEF +++ G+ M+ TSV
Sbjct: 3 MRVLNVAEKNKVAATVSQLLSNG---RCRQSNSCATYCKIYEFPFTVAGRQADMVFTSVA 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL+EL+F+ R R WHSC P +LY A V K VP+++K +K+ L++ AR C WLVLWLDCD
Sbjct: 60 GHLLELEFEGRVRGWHSCAPRELYDAQVFKGVPKNEK-MKRNLQQLARSCDWLVLWLDCD 118
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGENIAFEV C VN LV++RARFSALI ++ +A+ NLV PN+ A AVDARQEI
Sbjct: 119 REGENIAFEV---CTEVNPRLVIKRARFSALIYADVARAMANLVPPNEHEAQAVDARQEI 175
Query: 186 DLRIGASFTRFQTMLLKN-FHIDSVT-DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
DLRIGASFTR QT+LL+N F + D+ ++LSYGPCQFPTLG +V+R WEIQAH E
Sbjct: 176 DLRIGASFTRLQTLLLQNKFDWGEMAGDNGRVLLSYGPCQFPTLGLIVQRAWEIQAHIPE 235
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW I ++ F W RG L+D A +++E+C P ATV V K K+ P
Sbjct: 236 NFWYIQVLYRDGPKACEFRWHRGRLYDAAVAGMLHELCAASPLATVAAVEGARKTKWAPA 295
Query: 304 PLSTIELEKRAS 315
PLST+E++KR S
Sbjct: 296 PLSTLEMQKRGS 307
>gi|403373519|gb|EJY86679.1| DNA topoisomerase [Oxytricha trifallax]
Length = 1033
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 217/342 (63%), Gaps = 6/342 (1%)
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
F W R +FD I+ E ATVTKV + K K P PL+TI+ +K SR R+
Sbjct: 371 FDWARYRIFDQQMCEILLENIQDGEVATVTKVISKRKTKIKPIPLNTIDFQKLVSRKLRI 430
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
S M++AE LYQ G+ISYPRTET+ F + NL IV++ + +G YA+++L +
Sbjct: 431 GSHKAMEIAEKLYQRGYISYPRTETNIFPA-MNLQEIVKDLTKNTTFGGYAKKIL--SGN 487
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
L+ P G DDKAHPPIHP K ++ + D +++YE++ +HFLAC+S+ A G ET +
Sbjct: 488 LYGTPRKGKQDDKAHPPIHPVK-NANKMDLKHDEWRIYEIICKHFLACLSKDATGNETKI 546
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPP 499
E+ I GE F T G VI+ N+L++Y+ +E W +P + G QF P+ + + T+PP
Sbjct: 547 EVEIGGETFKTRGLVIVESNWLEIYQPYEKWADNTLPNFQEGDQFTPSLIQMQESQTQPP 606
Query: 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
LLSEADL+S MDK GIGTDAT+H+HIK + DR YA+K F PT +G LV YD +
Sbjct: 607 KLLSEADLISRMDKNGIGTDATIHEHIKTIQDRGYALKQGQ-HFIPTQLGLNLVNAYDHV 665
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
G EL+KPNLRS +E +KE+ GN++K +VL CL++M+ F
Sbjct: 666 GIELFKPNLRSQVERQLKEIEYGNRNKKEVLKECLREMRRIF 707
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 125/191 (65%), Gaps = 5/191 (2%)
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
M++TSV GH++E F ++ + W +LY + K DI K L E A+ L
Sbjct: 4 MIVTSVCGHIIEYKFPQKCKDWAKTPYKELYKCKLEKQPSVQNLDIVKNLHEYAKNADML 63
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQN-LVDPNQWFAD 177
+LWLDCDREGE IAFEVIE+ R + + ++RA FSAL ++I +A+ L +PN+ AD
Sbjct: 64 ILWLDCDREGEAIAFEVIEIVREIKPDIEIKRAHFSALTKQDIFRAITTRLTEPNKNQAD 123
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AV ARQEIDLRIGASFTR Q+M K D + ++ VLSYGPCQFPTLGFVVER+ ++
Sbjct: 124 AVFARQEIDLRIGASFTRLQSMKFK----DVIGANQKQVLSYGPCQFPTLGFVVERFTKV 179
Query: 238 QAHESEEFWTI 248
E E++WTI
Sbjct: 180 SKFEPEKYWTI 190
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 638 CGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPG----P 693
C C+++ + +K + G L C +P+C+N+ +LP +V AVT C +CT
Sbjct: 806 CDKCRQNPVYIKMANSGFLFATCAGYPKCKNSQFLPKNVKNLAVTDENCPACTEARENEE 865
Query: 694 VYLIQFKF------RQHEIPPGF-NVNHLGCI-GGCDETLRQLIEICGTGSRIPAR 741
V ++ F Q E+ N + CI G CDE +++ + C G +IP +
Sbjct: 866 VKKLKISFYTSCAQNQEELQQAIQNSQSIYCILGTCDENFQKVKQFC-KGIKIPPK 920
>gi|73669624|ref|YP_305639.1| DNA topoisomerase, type I [Methanosarcina barkeri str. Fusaro]
gi|72396786|gb|AAZ71059.1| DNA topoisomerase, type I [Methanosarcina barkeri str. Fusaro]
Length = 855
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 224/717 (31%), Positives = 351/717 (48%), Gaps = 57/717 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIR-EGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+ ++ AEK A +A IL + + RI EG +YEF + +G+ L+ ++G
Sbjct: 1 MTIVAFAEKNKAASQIASILGEGEVERITVEGLP----VYEFKW--KGE--EWLVMGLSG 52
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M DF E+Y KW +P L +K V + D ++ A+R +VL D DR
Sbjct: 53 HIMNYDFPEQYNKWKEVNPGVLLEIDPQKLV--TRTDYAAAVKNLAKRANKIVLACDYDR 110
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE + V ++ + RARFS+L +E+ +A ++L++P+ A A +ARQ +D
Sbjct: 111 EGENIGFEAKTLAEKVT-NVPIERARFSSLSPKEVKKAFESLINPDYNMAMAAEARQILD 169
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L++GA+FTRF T+ ++ + T D +LS GPCQ PT GFV ER I+A ++++FW
Sbjct: 170 LKMGAAFTRFVTLSVRE---RARTKD---ILSIGPCQTPTCGFVYEREKAIRAFQAKDFW 223
Query: 247 TINCSHKSEEGTATFSWMR--------------------GHLFDYTSAVIIYEMCVQEPT 286
I +E G R G++ D A I++
Sbjct: 224 KITAIFSAESGKEGGKEGRKEGRKEGKKERGDFEGTHRAGNIHDKEKAAEIFKRLKGTKE 283
Query: 287 ATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD 346
V K +E PP PL+T E KRAS++ +S E ++VAE LY AGF SYPRTET+
Sbjct: 284 GLVAKKTVKETKTSPPNPLNTTEFLKRASKFLGISPELALEVAEQLYLAGFTSYPRTETN 343
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS- 405
++ + +V + ++ P+A+ +L P +G D HPPIHP + +S
Sbjct: 344 KYAEDFDFKSLVFDFARQKEYKPFAESILIAPI----VPKNGEKDAHDHPPIHPIRAASR 399
Query: 406 GESRWSQD---HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462
GE + + ++Y L+ RHFLA + AV +T + + + E F +SG V+ +L
Sbjct: 400 GEVSSAVNIPQAPEVYNLIARHFLANLMPAAVFEKTHLHLLVNEEPFDSSGTVLKDSGWL 459
Query: 463 DVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
+ Y FE+ ++P GQ+ L+ T PP L+EA+LL+ MDK GIGT AT
Sbjct: 460 EAYPFENKKDKLLPFVEEGQKVGVKKLSNTKSKTSPPKKLTEAELLTLMDKNGIGTKATA 519
Query: 523 HDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
HI+ R Y T + + G L+ G L KP +R+ +E+ ++EV G
Sbjct: 520 PTHIETNKKRGYLETKGKT-ISILDTGFTLMDGLSLTVPILVKPEIRAKIEALIQEVEDG 578
Query: 583 NKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
K L +K + K +L ++ + + ED++ G C+
Sbjct: 579 KKEFEAALYEGTTLIKEMYAQLEANKKELTSSIAGTIKDEAALEDKK------NYIGTCK 632
Query: 643 ESNMVLKKSR-DGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
VL+ + D VGC +P CRN+ LP + A+T C G V +++
Sbjct: 633 ACGHVLRIVQTDSGRFVGCTGYPDCRNSYPLPKA---GALTVLRSKECKKGGVAVLK 686
>gi|412993300|emb|CCO16833.1| predicted protein [Bathycoccus prasinos]
Length = 949
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 219/705 (31%), Positives = 347/705 (49%), Gaps = 93/705 (13%)
Query: 11 LNVAEKPSVAKSVAGIL-------------------SKNQGLRIREGRSRYNKIYEFNYS 51
L+VAEKPS+AKS+A +L + GL+ ++ +I+EF
Sbjct: 20 LHVAEKPSLAKSIAQLLSSSSSSSLDDCDEKSSLGNKRGTGLKTKKTTVGSIEIHEFYRP 79
Query: 52 IRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEE 111
+ C TSV GH+ +DF ++++ W DP L+ K V + I+ +LE E
Sbjct: 80 FLRKKCLHRFTSVAGHVCSIDFPDKFQDW-DLDPKLLFDCKTEKKVTAGR--IRGSLERE 136
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVC---------RAVNCHLVLRRARFSALIDREIH 162
AR C LVLWLDCDREGENI FEV++ R N + RA+FSA+ +
Sbjct: 137 ARTCDALVLWLDCDREGENICFEVMDAVVPRMRGGGGRYENVY----RAKFSAISKPSVE 192
Query: 163 QAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPC 222
A++NL PN+ +DAVDARQE+DL++G +FTRFQT + D + + +SYGPC
Sbjct: 193 NAMKNLTKPNKNESDAVDARQELDLKMGVAFTRFQTKYFQ----DKFSGFDSRCVSYGPC 248
Query: 223 QFPTLGFVVERYWEIQAHESEEFWTINCS------------------HKSEEGTAT---- 260
Q PTLGF V+R+ EI E FW + + + G AT
Sbjct: 249 QTPTLGFCVKRHLEIIRFVPESFWRLKLNLPTVAAASLKQSDDDVVIVDDDNGMATKTTS 308
Query: 261 -----FSWMRGHLFDYTSAVIIYEMCV-----QEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+ W R +FD +SA+ + +C ++ T+ + ++ K PP ++T+E+
Sbjct: 309 YEIAEWKWHRERVFDESSAISLEALCSDFLKKKDKKGTLVGTIRSKQSKRPPPGMNTVEM 368
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
K S+ + + M++AE LY GFISYPRTE+ ++ G + IV Q + +WG
Sbjct: 369 LKTCSK-MGIGAHRAMQIAERLYLDGFISYPRTESSAYPPGFDFKSIVASQTSNDEWGDV 427
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
A+++L ++ R P SGG D HPPI P + + + +++YEL+ RHFLA +
Sbjct: 428 AKKILSFSS--IRKP-SGGQDAGDHPPITPAGRFGNRNSMNGEMFRVYELISRHFLATLL 484
Query: 431 QPAVGAETIVEINIA-GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH--------- 480
V EI IA E + G IL + + + +IP
Sbjct: 485 PDLVLENIESEIVIAESERWKAKGVKILDFGWTEALPRRAPKLKIIPDAYQLSDNESKNN 544
Query: 481 -GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA--IK 537
+ ++T++ G T+PP L+E++L+ M+K GIGTDA++ HI + R Y +
Sbjct: 545 KSRDVDVISVTIERGETQPPNYLTESELIGTMEKNGIGTDASIPTHINTVEARKYCEIVP 604
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
R PT++G L Y + EL P +R+ +E + ++ G K V++ L Q+
Sbjct: 605 RDGRRVIPTDLGITLCRAYASIDEELALPTVRAHIEKQLDLIAEGKADKNAVVSQALMQI 664
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
KA F+ K + +++ +F ++ ++ Q+ V CG C+
Sbjct: 665 KAKFIHFE-KNIAIVD--NLFEASFASPKELQSTPHTV--CGRCR 704
>gi|307596564|ref|YP_003902881.1| DNA topoisomerase [Vulcanisaeta distributa DSM 14429]
gi|307551765|gb|ADN51830.1| DNA topoisomerase [Vulcanisaeta distributa DSM 14429]
Length = 618
Score = 308 bits (790), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 205/599 (34%), Positives = 304/599 (50%), Gaps = 22/599 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEF-NYSIRGQPCHMLMTSVTG 66
I+ L VAEK SVAK++A L+ +G K+Y +Y + + G
Sbjct: 3 IDSLVVAEKDSVAKAIAKYLA--------QGSISVKKVYGVKSYWFTRGGRQWVSIGLKG 54
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M++DF E KWHS +P+ L+ A + ED + L + L LD D
Sbjct: 55 HMMDVDFPEELNKWHSVEPSKLFDAEPILVIREDTISYVRALSRLGASASVVYLALDADS 114
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE IA+E + V R N V +R FSA+ +I +A + N A V R +D
Sbjct: 115 EGEAIAYEAMLVIRNANPRAVFKRVLFSAVTKSDIIEAFNSPTSLNPGLAKRVFTRMILD 174
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L +GA FTR T+ ++ +++ R LSYGPCQ P L VV+R E + + E+++
Sbjct: 175 LTLGAVFTRALTLSVEKTDKNALA--RGSFLSYGPCQTPVLNLVVQRALERENFKPEKYY 232
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
T++ T + G D A + + + A V +E PP PL
Sbjct: 233 TLHIIVNVNGVRVTLNH-DGTFKDKQEAERVLSLVRGKARAMVIIANYKEDFIEPPVPLD 291
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
TIELE+RASR+ + + + +AE+LY+ G+ISYPRTET + +L I+ E + H +
Sbjct: 292 TIELERRASRFLNIRPKAALDIAEELYRHGYISYPRTETTIYPPTLSLRQILLE-LTHGE 350
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES--RW--SQDHYKLYELVV 422
G YA+ LL G+ P G +D AHPPI+PT+ + + R+ ++ ++K+Y+LVV
Sbjct: 351 HGDYAKTLL----GMSIKPTHGDSNDGAHPPIYPTRGVTRQEILRYFKNEKYWKIYDLVV 406
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLA +S PA + + I+G FS G I+ K YL +Y FES V+P
Sbjct: 407 RHFLATLSPPARVERQKIVVEISGHRFSVDGLKIIDKGYLTIYPFESPSEKVLPRVRVSD 466
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ ++ T PPP LSE++LL M K GIGTDATM DHI + R Y K N +
Sbjct: 467 ELSIVKAWIEERETEPPPYLSESELLRLMKKYGIGTDATMQDHIHTNVIRGY-FKIRNKQ 525
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G+A++ G EL P RS ME + E++ G+ DVL + + +
Sbjct: 526 CIPTPLGKAVISVLSKTGNELIDPLFRSRMEKALMEITSGSLKPDDVLFTFKNEARKIY 584
>gi|358334208|dbj|GAA52642.1| DNA topoisomerase III [Clonorchis sinensis]
Length = 887
Score = 308 bits (788), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 197/517 (38%), Positives = 283/517 (54%), Gaps = 21/517 (4%)
Query: 111 EARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCH-LVLRRARFSALIDREIHQAVQNLV 169
+A+ L+LWLDCD+EGENI FEVI+ +V H + RA FSA+ D E+ A++NL
Sbjct: 2 QAKNSDTLILWLDCDKEGENICFEVIDCVYSVMIHPKRIFRAHFSAITDEELSNALRNLR 61
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
PN+ + +VDARQE+DLRIG +FTRFQT K F + NLV S+GPCQ PTLGF
Sbjct: 62 QPNKNESLSVDARQELDLRIGCAFTRFQT---KFFQGKYGNLNSNLV-SFGPCQTPTLGF 117
Query: 230 VVERYWEIQAHESEEFWTINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTAT 288
V+R+ IQ+ + E FW I S + G T W R LFD +A++ TA
Sbjct: 118 CVKRHDRIQSFKPESFWRIKASLSVKGGATMDLVWTRDRLFDKEAAMVFLTKVKSCCTAE 177
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF 348
V +V +EK+K P L+T+E+ + AS + M VAE LY +G+I+YPRTET ++
Sbjct: 178 VMQVTTKEKVKPRPQGLNTVEMLRVASACLGIGPHAAMAVAERLYTSGYINYPRTETTTY 237
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GE 407
S +L G+VQ+Q HP WG A+ LL A+GL P GHD HPPI P + ++ GE
Sbjct: 238 PSTFDLRGLVQQQAKHPQWGDVARDLL--ASGL--TPPRKGHDAGDHPPIAPMRMATPGE 293
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA-GEVFSTSGRVILAKNYLDVYR 466
D +LYE + +HFLA V T V ++I GE+F+ +G +L + +
Sbjct: 294 --LGHDAARLYEFIAQHFLATVMPDCRYESTQVTLSIGDGELFTLTGIRVLEPGFTRILT 351
Query: 467 FESWGGLVIP--TYVHGQQF-IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
++ +P V G + + TL G T PP L+EA+L++ M++ GIGTDA++
Sbjct: 352 RQALTDQTLPDEILVRGAKIPLAGEPTLVEGQTGPPDYLTEAELITAMERHGIGTDASIP 411
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
HI+ ++ R Y R PT +G LV GY + EL P++R +E + ++ G
Sbjct: 412 THIENIVQRAYVQLLPGRRLQPTPLGIVLVHGYQAIDPELVLPHMRRAVEEQLNHIANGR 471
Query: 584 KSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
LQ + A F ++ + AM FE
Sbjct: 472 AQ----FEQVLQFVVAIFAAKYRYFIEHILAMDQLFE 504
>gi|20090640|ref|NP_616715.1| DNA topoisomerase [Methanosarcina acetivorans C2A]
gi|19915684|gb|AAM05195.1| DNA topoisomerase, type I [Methanosarcina acetivorans C2A]
Length = 843
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 217/697 (31%), Positives = 346/697 (49%), Gaps = 37/697 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIR-EGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+ V+ AEK A +A IL + +I EG YEF + +G+ L+ ++G
Sbjct: 1 MTVVAFAEKNKAAAQIASILGDGEVDKISVEGLP----AYEFKW--KGE--EWLVMGLSG 52
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M DF E+Y KW +P L K V + + +++ A+R ++L D DR
Sbjct: 53 HIMNYDFPEQYNKWSEVNPGTLLGVDPEKFV--TRAEYATAIKKLAKRADKIILACDYDR 110
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE + V + + RARFSAL +E+ +A ++ VDP+ A A + RQ +D
Sbjct: 111 EGENIGFEAKTLAEEVT-DVPVARARFSALSPKEVRKAFESPVDPDHNLAMAAETRQILD 169
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L++GA+FTRF T+ ++ + T D +LS GPCQ PT GFV ER I+A ++++FW
Sbjct: 170 LKMGAAFTRFVTLSVRE---KARTKD---ILSIGPCQTPTCGFVYEREKAIRAFKAKDFW 223
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I ++ G + G++ D A I++ V K +E PP PL+
Sbjct: 224 KITAIFGAKGGDFEGTHRAGNIHDKEKAAEIFKRLKGAKEGFVVKKTVKEAKTSPPNPLN 283
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T E KRAS++ +S E ++VAE LY AGF SYPRTET+ ++ + ++ + +
Sbjct: 284 TTEFLKRASKFLGISPEVALEVAEQLYLAGFTSYPRTETNKYADDFDFKTLLFDFARQKE 343
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GESRWS---QDHYKLYELVV 422
+ P+A+ +L P +G D HPPIHP + ++ GE + ++Y+L+
Sbjct: 344 YKPFAESILSAPI----VPKNGDKDAHDHPPIHPIRVAAKGEISAAVTIPHAAEVYDLIA 399
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLA + AV +T + + + E F +SG V+ +L+VY FE+ ++P +
Sbjct: 400 RHFLANLMPAAVFEKTHLHLQVREEPFDSSGTVLKDAGWLEVYPFENKKDKLLPFVEEKE 459
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ L+ T PP L+EA+LL+ MDK GIGT AT HI+ R Y T
Sbjct: 460 KVDVKKLSNTKSKTSPPKKLTEAELLTLMDKHGIGTKATAPTHIETNKKRGYFETKGKT- 518
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
+ + G L+ G L +P++R+ +E+ ++EV G K LA +K +
Sbjct: 519 VSILDTGFTLMDGLSLTVPILVRPDIRAKIEALIQEVEDGKKEFEAALAEGTALIKEMYA 578
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSR-DGNLMVGCL 661
K +L + + + ED++ G C+ VL+ + D VGC
Sbjct: 579 QLEANKKELTSNIAGTIKDEAALEDKK------NYIGTCKACGHVLRIVQTDTGRFVGCT 632
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
+P CRN+ LP + A+T C G +++
Sbjct: 633 GYPDCRNSFPLPKT---GALTVLRSKECKKGGAAVLK 666
>gi|440291485|gb|ELP84754.1| DNA topoisomerase 3-beta-1, putative [Entamoeba invadens IP1]
Length = 853
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 228/701 (32%), Positives = 344/701 (49%), Gaps = 61/701 (8%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L VAEKP +A+S++ L+ + R G S + ++EF + RG+P MT+V GH+
Sbjct: 3 ILMVAEKPLLAESISKFLATGP-INTRRGISGF--VHEFMCNFRGRPQKAKMTAVAGHVY 59
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+F+ ++KW S DP L+ V+K K I L+ EA+ C +VLWLDCDREGE
Sbjct: 60 TCEFEADFQKW-SVDPEALFSCKVKKEEANPKTHIPAHLKNEAKGCSAIVLWLDCDREGE 118
Query: 130 NIAFEVIEV--------CRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
NI FEV++ CR + RA FS++ EI +A NL P+ A+AVDA
Sbjct: 119 NICFEVLDNTVDYMQKGCR-------IYRAIFSSITKNEIVKAFNNLGSPDPRLAEAVDA 171
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
RQEIDLR+GA+FTR QT LK + + ++S+GPCQ PTLGF V+RY +I
Sbjct: 172 RQEIDLRVGAAFTRLQTTFLK----EKFPRMGDALVSFGPCQTPTLGFCVQRYKDILNFV 227
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+ ++ + + G + + D A + E C + + V K+ E K
Sbjct: 228 PKAYYIVKVNVNDLSGRSKKLKLENRFDDKAKADAVLEEC-RSCSGIVKKMNVTESRKSR 286
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ K AS MS TM +AE LY G+ISYPRTE+ FS I+ E
Sbjct: 287 PTGLNTVEMLKGASLRLGMSPSDTMHIAEKLYTQGYISYPRTESTKFSQHFGFDSILAEL 346
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT---KFSSGESRWSQDHYKLY 418
+ Q L A G+ N GG D HPPI P +F+ G+ +LY
Sbjct: 347 GSSTQFAEKVQ--LVRANGI--NVPKGGEDKGDHPPITPLTYPQFALGDGEM-----RLY 397
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV------YRFESWGG 472
+ + FLA + + AV + V I FS SG+++ +L + E
Sbjct: 398 QYICNSFLASLYKDAVFQKASVSIEFGKYSFSGSGKILKDPGFLKMTTKLDDDDDEEDDA 457
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
++ ++ ++ ++ G+T P L+E +L++ M+K GIGTDA++ HI +++R
Sbjct: 458 IMPDSFKLNEKIEGGKFEINKGMTTCPDYLTEYELITLMEKNGIGTDASIPVHIGNIINR 517
Query: 533 FYA-IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
Y + A PT G AL YD + +L P +R+ +ES++ ++ G V++
Sbjct: 518 GYVTLNGAKRTLQPTKHGLALTKTYDAIEKKLVSPEIRAHIESNVCRIAEGKADMDSVIS 577
Query: 592 NCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKK- 650
L+ + FL R K +K+LE F +DQ + CG C M++K
Sbjct: 578 EALEVFENTFLKLR-KNLKVLEDN---FGELYQVQDQSRS---FSNCGKC--GRMLMKVI 628
Query: 651 SRDGNLMVGCLA----FPQ----CRNAVWLPGSVSEAAVTT 683
S D LM A PQ +N+V P E +TT
Sbjct: 629 STDTYLMCNTCAKKYELPQKCTYTQNSVSCPICNFETVMTT 669
>gi|207342920|gb|EDZ70541.1| YLR234Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 478
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 177/454 (38%), Positives = 248/454 (54%), Gaps = 34/454 (7%)
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVT------------DDRNLVLSYGPCQFPT 226
V R EIDLR G +FTR T L+N + T + + V+SYG CQFPT
Sbjct: 1 VGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFPT 60
Query: 227 LGFVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE 284
LGFVV+R+ I+ EEFW I +K GT TF W RGHLFD S + YE C++
Sbjct: 61 LGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIET 120
Query: 285 P--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
A V ++ + KY P PL+T+EL+K +RY R++++ ++ AE LYQ GFISYPR
Sbjct: 121 AGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYPR 180
Query: 343 TETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLLD----HAAGLWRNPGSGGH 390
TETD+F +L +V++Q G W YA LL ++ P SG H
Sbjct: 181 TETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGSH 240
Query: 391 DDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450
DDKAHPPIHP E+ S ++YE V RHFLAC S+ A G T + ++ A E FS
Sbjct: 241 DDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSTTLVLDWAVERFS 300
Query: 451 TSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
SG V+L +N+LDVY + W +P + +G T PP ++E++L+
Sbjct: 301 ASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELIL 360
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LW 564
MD GIGTDAT+ +HI K+ R Y + T PT +G +LV G++ +G E
Sbjct: 361 LMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLEDSFA 420
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
KP R ME D+K++ G+ SK DV+ + +++ +
Sbjct: 421 KPFQRREMEQDLKKICEGHASKTDVVKDIVEKYR 454
>gi|298674695|ref|YP_003726445.1| DNA topoisomerase [Methanohalobium evestigatum Z-7303]
gi|298287683|gb|ADI73649.1| DNA topoisomerase [Methanohalobium evestigatum Z-7303]
Length = 772
Score = 306 bits (783), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 211/704 (29%), Positives = 338/704 (48%), Gaps = 37/704 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIR-EGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
++++ AEK A +A ILS+ R EG + +YEF + + ++G
Sbjct: 1 MSIVAFAEKNKAAAQIASILSEGNFERTTLEGVN----VYEFKKDGK----QWRIMGLSG 52
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+M D+ + Y W DP L + + K+ + A+ ++L D DR
Sbjct: 53 HIMTYDYPQEYNNWKDVDPGVLIDTMPEQFIT--KQAFANAISRLAKDSDEIILACDYDR 110
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGENI FE + V C+ ++RARFS+L EI +A QN V+P+ A++ ARQ +D
Sbjct: 111 EGENIGFEAKSIAEKV-CNSPIKRARFSSLSTGEIKKAFQNPVEPDVNLANSAKARQILD 169
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L++G +FTR+ T+ ++ VLS GPCQ PT GFV ER I+ E +FW
Sbjct: 170 LKMGVAFTRYITLSVQQ------KARTKGVLSIGPCQTPTCGFVYEREKAIKEFEPRDFW 223
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I + + G FD A +Y T VT + +E PPYPL+
Sbjct: 224 KIEAVFTHNDIDFQGTHRTGKFFDKQKADAVYNKISDCKTGQVTNKKVKETKSSPPYPLN 283
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T E KRAS++ ++S+ +++AE LY +GF SYPRTET+ +++ + V E
Sbjct: 284 TNEFLKRASKFLGLNSDRALEIAEQLYLSGFTSYPRTETNKYANDFDFQSRVAELTKKAH 343
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GESRWSQDHYK---LYELVV 422
+ + G NP +G D + HPPIHP K ++ G+ + + K +Y+L+V
Sbjct: 344 KELALEVFKNSEDGF--NPRNGTKDAQDHPPIHPIKSANKGDINNAVNDSKGWDVYDLIV 401
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
RHFLA + QPAV +T +EI++ E+F +G V ++ VY FE+ ++P +
Sbjct: 402 RHFLANLMQPAVFEKTRIEISVNDEIFDATGTVKKESGWIWVYPFEAKNDKILPEIEINE 461
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ +T + T PP L+E++LL+ MDK GIGT AT HI+ R Y +
Sbjct: 462 KLKINKITNTNSQTTPPKRLTESELLTLMDKNGIGTKATAPTHIETNKKRGY-FETKGKS 520
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
+ + G L+ D + KP +R+ +E +++V G KS + +K +
Sbjct: 521 ISILDTGFTLMDALDKSVPLIVKPEIRARVEQLIQDVEDGKKSLDGAINEGTALIKQMYS 580
Query: 603 DARLKKVKLLEAM-GIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK-KSRDGNLMVGC 660
K +++ + G + D+ A + G C E + VL+ + D VGC
Sbjct: 581 QLTSNKDEMVSQIAGTIY-------DESVAADSDNYIGKCSECSRVLRIVTTDNGRFVGC 633
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQH 704
+P+C+N LP + A+ C G +I+ + H
Sbjct: 634 TGYPECKNTYPLP---KKGALNIMKSRECKKGAPAVIKVGNKYH 674
>gi|407034342|gb|EKE37171.1| DNA topoisomerase domain containing protein [Entamoeba nuttalli
P19]
Length = 840
Score = 305 bits (782), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 216/684 (31%), Positives = 333/684 (48%), Gaps = 35/684 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +L VAEKP +A+S+A LS + R+G + ++EFN +G+ MTSV GH
Sbjct: 1 MTLLMVAEKPLLAESIAKFLSLGP-IHTRKGIAPSCPVHEFNCKFKGKITKAKMTSVAGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +F+ ++ W S DP DL++ V K K I L EA C LVLWLDCDRE
Sbjct: 60 VYTCEFERAFQNW-SVDPRDLFNCKVIKVEANPKTRIPAHLRNEANGCDGLVLWLDCDRE 118
Query: 128 GENIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
GENI FEV++ + + RA FS++ ++I +A +L P+ A+AVD RQEID
Sbjct: 119 GENICFEVMDNTVSYMTKTCKIYRALFSSITKKDIIEAFNHLGHPDDRLAEAVDCRQEID 178
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+G +FTR QT LK + D ++S+GPCQ PTLGF V+R EI S+ F+
Sbjct: 179 LRVGVAFTRLQTKFLKE-RFPKLGDS---LISFGPCQTPTLGFCVDRQKEIDNFVSKPFY 234
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
T+ + EG + H FD S V + V K+ E K P L+
Sbjct: 235 TLKVIIEDHEGRNKTLKLDKH-FDNKSEVEDIVKSCKGIQGKVIKMNVNELKKSRPVGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+E+ K AS + + TM +AE LY G+ISYPRTE+ +SS N I+
Sbjct: 294 TVEMLKVASVKLGLGPQETMSIAEKLYTRGYISYPRTESTKYSSHFNFTDILNNLQQTNQ 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ Q + + + N G D HPPI P + + + +L++ + FL
Sbjct: 354 FREKVQLIKQNGINIPYN----GEDKGDHPPITPLNYPN--EYLNDSEKRLFDFITNTFL 407
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW------GGLVIPT-YV 479
A + + + V + I F+ SG+V+ ++ + L+ PT ++
Sbjct: 408 ASIYKDSTFQRVSVSVQIGNYTFNGSGKVLKDPGFMKITNHYDEDEELKDSDLIKPTSFI 467
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G IP+ + G+T+ P L+E +L+S M+K GIGTDA++ HI+ ++ R Y D
Sbjct: 468 EGNIVIPSMFDIVKGMTKCPDYLTEYELISLMEKNGIGTDASIPVHIQNIISREYVSLDT 527
Query: 540 NTR-FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
+ R PT IG AL + + L P +R+ +ES + ++ G +VL L +
Sbjct: 528 SKRTLRPTKIGLALARTLETVDKNLITPQIRAHIESMVSRIAEGKAQYENVLEEALDTFE 587
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMV 658
+L + K +K+LE + ++ Q + +CG C ++LK D
Sbjct: 588 QNYLIYK-KNLKVLE------DNFAPLYQVQEQSRLFSKCGKC--GRILLKVIGDQTY-- 636
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVT 682
L+ P C LP + S + T
Sbjct: 637 --LSCPTCSLKFNLPQNASYSQQT 658
>gi|336476470|ref|YP_004615611.1| DNA topoisomerase [Methanosalsum zhilinae DSM 4017]
gi|335929851|gb|AEH60392.1| DNA topoisomerase [Methanosalsum zhilinae DSM 4017]
Length = 772
Score = 305 bits (780), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 216/705 (30%), Positives = 356/705 (50%), Gaps = 53/705 (7%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+ EK A+ +A ILS + RIR +YEF+ G +M + GH+M D
Sbjct: 6 ITEKNRAAEQIARILSNGKYKRIR---IESIPVYEFS---SGNQSWKIM-GLAGHIMGYD 58
Query: 73 FDERYRKWHSCDPADLYH-APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENI 131
+ Y+ W + DP L P +K + E+ + + L EA ++L D DREGENI
Sbjct: 59 YPSAYKDWRAVDPGTLLDIEPEKKVLKEEYASVIRKLANEASE---IILACDYDREGENI 115
Query: 132 AFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGA 191
FE ++ V+ + +RA+FS+L EI++A +LV+P+ A A +ARQ +DL++G
Sbjct: 116 GFEAKDIASKVS-DVSFKRAKFSSLSPEEINRAFNSLVEPDVNMAMAAEARQILDLKMGV 174
Query: 192 SFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCS 251
+FTRF T+ ++ + V + +LS GPCQ PT GFV ER I+ + +FW I
Sbjct: 175 AFTRFITLSVREY----VRTKK--ILSVGPCQSPTCGFVYERERTIRDFKPTDFWKIEAL 228
Query: 252 HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELE 311
S E S +G +F+ A+ +Y + ++ + +E PP PL+T EL
Sbjct: 229 FNSGETNFPGSHRKGKIFNKDEAMSVYRKIKDCSSGSICERNVKESSVNPPNPLNTNELL 288
Query: 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE-QIGHPDWGPY 370
KR S + +S E+T+K+AEDLY AGFISYPRTET+ +S I+ E + GH +
Sbjct: 289 KRGSNFLGISPENTLKIAEDLYLAGFISYPRTETNKYSKEFKFAEIIDEFRNGHYN---- 344
Query: 371 AQRLLDHAAGLWRN--PGSGGHDDKAHPPIHPTKFSSGES--RWSQ--DHYKLYELVVRH 424
D + L + P +G D HPPI+P K +S + + S+ D++ +Y+L+VRH
Sbjct: 345 -----DCVSLLPGDIHPKNGKKDSHDHPPIYPIKSASKKDVMKLSENPDYWNIYDLIVRH 399
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
F A + PA+ +T + + + E+F + G V+ ++ VY FE ++P G
Sbjct: 400 FFANLMPPAIFEKTHLAVLVKDEIFDSKGSVMKDAGWMQVYPFEKSSDKLLPRLQMGDGV 459
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
++ + T PP L+EA+LL+ M+ GIGT AT HI+ R Y ++ +
Sbjct: 460 NIEEISCNMSQTTPPKKLTEAELLTLMEHNGIGTKATASGHIETNKKRGY-FENRGKTVS 518
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL---ANCLQQMKACF 601
+ G L+ ++ + KP +R+ +ES +++V GN + + +++M +C
Sbjct: 519 IMDRGFVLMDALNESVPSVIKPEVRARIESLIQDVESGNMDIDSAVLEGTDLIKKMYSCL 578
Query: 602 LDARLKKV-KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSR-DGNLMVG 659
+ + + K++ A+ D+ A + G C + N +LK + D VG
Sbjct: 579 SEGKDRLASKVVAAIS----------DEAAQEDKKNFIGYCSQCNRILKIIKTDNGRFVG 628
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQH 704
C +PQC+N LP + A++ + C G +I+ + H
Sbjct: 629 CTGYPQCKNTYPLP---RKGALSILRSSECRRGGAAVIKVGKKYH 670
>gi|325968322|ref|YP_004244514.1| DNA topoisomerase [Vulcanisaeta moutnovskia 768-28]
gi|323707525|gb|ADY01012.1| DNA topoisomerase [Vulcanisaeta moutnovskia 768-28]
Length = 618
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 206/598 (34%), Positives = 305/598 (51%), Gaps = 20/598 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
I+ L VAEK SVA+++A L++ + IR R K Y F R + + GH
Sbjct: 3 IDSLVVAEKDSVARAIAKYLAQG-SISIR--RIYGIKAYWFTRDNR----QWVSIGLKGH 55
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M +DF E KWHS +P+ L+ + D + + L + L LD D E
Sbjct: 56 IMNVDFSEELNKWHSVEPSKLFDVEPILVIRGDDLNYVRALTHLGASANTVYLALDADPE 115
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE IA+E + V R VN V +R FSA+ I +A + + N A V R +DL
Sbjct: 116 GEAIAYEAMFVIRNVNPGAVFKRVLFSAVTRNAIIEAFNSPTNLNPGLAKRVFTRMVLDL 175
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
+GA FTR T+ ++ ID R LSYGPCQ P L VV+R E + + E+++T
Sbjct: 176 TLGAVFTRALTLSVEK--IDRKALSRGSFLSYGPCQTPVLNLVVQRALERENFKPEKYYT 233
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
++ ++ G G D A I + A V +E PP PL T
Sbjct: 234 LHIIVDAD-GKRIMLDHDGVFKDRQEAEKILNLVRSMAKAKVIIASYKEDFLGPPVPLDT 292
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
IELE+RASR+ + + + +AE+LY+ G+ISYPRTET + +L ++ E + H +
Sbjct: 293 IELERRASRFLNIRPKAALDIAEELYRHGYISYPRTETTIYPPTLSLKQVLLE-LTHGEH 351
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES--RW--SQDHYKLYELVVR 423
G YA+ LL G+ P G +D AHPPI+PT+ S + R+ ++ ++K+Y+LVVR
Sbjct: 352 GDYAKTLL----GMTIKPTRGNSNDGAHPPIYPTRGVSRQELLRYFKNERYWKIYDLVVR 407
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HF+A +S PA + + + FST G ++ K YL +Y FES V+P G +
Sbjct: 408 HFMATLSPPARIERQRIVVEVVDHRFSTDGLRMIDKGYLVIYPFESPSEKVLPRVKLGDE 467
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
++ T PPP LSE++LL M K GIGTDATM DHI + R Y + N +
Sbjct: 468 LSIIKAWVEERETEPPPYLSESELLRLMRKYGIGTDATMQDHIHTNIIRGY-FRVRNKQC 526
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G+A++ + G EL P RS ME + E++ G+ DVL + + +
Sbjct: 527 IPTPLGKAVINVFSKTGGELIDPWFRSRMEKALMEITSGSLRPTDVLFTFKSEARKIY 584
>gi|67473767|ref|XP_652633.1| DNA topoisomerase III [Entamoeba histolytica HM-1:IMSS]
gi|56469504|gb|EAL47247.1| DNA topoisomerase III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707795|gb|EMD47388.1| DNA topoisomerasebeta-1, putative [Entamoeba histolytica KU27]
Length = 840
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 214/684 (31%), Positives = 332/684 (48%), Gaps = 35/684 (5%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ +L VAEKP +A+S+A LS + R+G + ++EFN +G+ MTSV GH
Sbjct: 1 MTLLMVAEKPFLAESIAKFLSLGP-IHTRKGIAPSCLVHEFNCKFKGKITKAKMTSVAGH 59
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +F+ ++ W S DP DL+ V K K I L EA C LVLWLDCDRE
Sbjct: 60 VYTCEFERAFQNW-SVDPRDLFSCNVIKVEANPKTRIPAHLRNEANGCNGLVLWLDCDRE 118
Query: 128 GENIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
GENI FEV++ + + RA FS++ ++I +A +L P+ A+AVD RQEID
Sbjct: 119 GENICFEVMDNTVSYMTKTCKIYRALFSSITKKDIIEAFNHLGHPDDRLAEAVDCRQEID 178
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LR+G +FTR QT LK + D ++S+GPCQ PTLGF V+R EI S+ F+
Sbjct: 179 LRVGVAFTRLQTKFLKE-RFPKLGDS---LISFGPCQTPTLGFCVDRQKEIDNFVSKPFY 234
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
T+ + EG + FD S V + V K+ E K P L+
Sbjct: 235 TLKVIIEDHEGRNK-TLKLDKRFDNKSEVEDIVKSCKGVQGKVIKMSVNELKKSRPVGLN 293
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+E+ K AS + + TM +AE LY G+ISYPRTE+ +SS N I+
Sbjct: 294 TVEMLKVASVKLGLGPQDTMSIAEKLYTRGYISYPRTESTKYSSYFNFTDILNNLQQTNQ 353
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ Q + + + N G D HPPI P + + + KL++ + FL
Sbjct: 354 FREKVQLIKQNGINIPYN----GEDKGDHPPITPLNYPN--EYLNDSEKKLFDFITNTFL 407
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW------GGLVIPT-YV 479
A + + + + V + I F+ SG+++ ++ + L+ PT ++
Sbjct: 408 ASIYKDSTFQKVSVSVQIGNYTFNGSGKILKDPGFMKITNHYDEDDELKDSDLIKPTSFI 467
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G IP+ + G+T+ P L+E +L+S M+K GIGTDA++ HI+ ++ R Y D
Sbjct: 468 EGNTVIPSMFDIVKGMTKCPDYLTEYELISLMEKNGIGTDASIPVHIQNIISREYVSLDT 527
Query: 540 NTR-FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
+ R PT IG AL + + L P +R+ +ES + ++ G +VL L +
Sbjct: 528 SKRTLRPTKIGLALARTLETVDKNLITPQIRAHIESMVSRIAEGKAQYENVLEEALDTFE 587
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMV 658
+L + + +K+LE + ++ Q + +CG C ++LK D
Sbjct: 588 QNYLIYK-QNLKVLE------DNFAPLYQVQEQSRLFSKCGKC--GRILLKVIGDQTY-- 636
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVT 682
L+ P C LP + S + T
Sbjct: 637 --LSCPTCSLKFNLPQNASYSQQT 658
>gi|146182668|ref|XP_001024996.2| DNA topoisomerase family protein [Tetrahymena thermophila]
gi|146143729|gb|EAS04751.2| DNA topoisomerase family protein [Tetrahymena thermophila SB210]
Length = 858
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 196/609 (32%), Positives = 310/609 (50%), Gaps = 35/609 (5%)
Query: 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
P+ VL VAEKPS+A+++A LS+ ++ R ++++ F PC + +TSV G
Sbjct: 5 PVQVLMVAEKPSIARTIAQALSQ----QVHTQRRNNHEVHFFPSYFFQMPCLIKVTSVVG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
H+ DF Y + DP L+ AP K I + L+ EA+ C +LVLWLD DR
Sbjct: 61 HIFSTDFSPEYN-GNDVDPIKLFDAPTIKKFSSPSSTIIQHLKNEAQGCNFLVLWLDNDR 119
Query: 127 EGENIAFEVIEVCRAV------NCHLVLRRARFSALIDREIHQAVQNLV-DPNQWFADAV 179
EGENI FEVI+VC + N + RA+FS++ +I +A + L+ +P+ + AV
Sbjct: 120 EGENICFEVIQVCDSFLNVFDRNSKYIF-RAKFSSITQVDIIKAYEQLIAEPDLNQSLAV 178
Query: 180 DARQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
DARQ +DL++G SF++FQT L+N ++I +SYGPCQ PTL F VER+ EI+
Sbjct: 179 DARQILDLKLGLSFSKFQTRYLQNKYNIQGKKK-----ISYGPCQTPTLAFCVERHDEIE 233
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
+ + ++T+ + SE TA W + FD A + Q V + + +
Sbjct: 234 NFKPQTYYTVEVN-LSEYATA--KWSKEQTFDQEEAKKVLSEVQQSNQLMVKSISTVQAI 290
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
K P L+T+ + + AS+ + + + +AE LY GFI+YPRTET + + ++
Sbjct: 291 KSRPVGLNTVNMLRIASKKYEIGPHDAIHIAESLYLLGFITYPRTETTKYPGEFDFKSVL 350
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGS---GGHDDKAHPPIHPTKFSSGESRWSQDHY 415
H + ++A GL P + G D HPPI PT+ + +
Sbjct: 351 -----HAISNSKFNNMANYAKGLLSEPLNKPYKGVDSGDHPPITPTQ--NAPQSLNPQQM 403
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFES--WGGL 473
K+YELV ++FL +SQ A T ++ F ++L YLD+ +ES
Sbjct: 404 KIYELVCKNFLGSLSQDAQIENTTYILSSGQNEFEMKKSILLHSGYLDIVPWESVCLSNP 463
Query: 474 VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRF 533
I G + + +T+PP LSE+DL+ M++ GIGTDA+M HI ++ R
Sbjct: 464 KIEKIEEGVAIKYEQAEVLTLLTQPPSYLSESDLIGLMEQNGIGTDASMPQHINNIILRN 523
Query: 534 YAIKDANTR-FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y + R PT +G AL+ Y D+ +L P LR ME + +++ G +K +++
Sbjct: 524 YVYVNIKERQLIPTQLGIALIHAYKDIDNQLVAPELRRNMEEQISQIAKGQMTKDELVET 583
Query: 593 CLQQMKACF 601
++ K +
Sbjct: 584 QIKIFKQKY 592
>gi|4263718|gb|AAD15404.1| putative DNA topoisomerase III beta [Arabidopsis thaliana]
Length = 836
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 207/640 (32%), Positives = 320/640 (50%), Gaps = 96/640 (15%)
Query: 12 NVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
VAEKPS+A S+A +LS Q + R G + +++EF+ RG H +TSV GH+ +
Sbjct: 39 QVAEKPSIALSIASVLSHGQ-MSTRRGST---EVHEFDGMFRGFKAHYRVTSVIGHVFSV 94
Query: 72 DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKT-------LEEEARRCQWLVLWLDC 124
DF E+Y+ W + DP DL+ AP+ K K +I K+ L EAR C ++VLWLDC
Sbjct: 95 DFPEKYQNWATIDPQDLFDAPIIKKESNPKVNIFKSQAHICRHLSNEARGCSYMVLWLDC 154
Query: 125 DREGENIAFEVIEVC--RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DREGENI FEVIE + + RARFS++ +++I +A+ NLV+PN+ A AVDAR
Sbjct: 155 DREGENICFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDAR 214
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QEIDL+I LL N+ YGPCQ PTLGF V+RY I +
Sbjct: 215 QEIDLKI----------LL------------NVYFRYGPCQTPTLGFCVQRYMHINTFKP 252
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E+FW + + + W R LFD +A + ++ V+ TA V V +++++K P
Sbjct: 253 EKFWALRPYIRKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRP 312
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+ L K SR + +D ++S IV +
Sbjct: 313 AGLNTVNLLK-CSRVW-------------------------ASDGYAS---CRAIVYSRF 343
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H +G D HPPI P + ++ E D ++LY+ V
Sbjct: 344 --------------HQSGT---------DAGDHPPITPMR-AATEVMVGGDAWRLYQYVC 379
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
+HFL VS T VE++I GE F +G+ + K + + + + +P+++ G+
Sbjct: 380 QHFLGTVSPNCKYIRTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGE 439
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + L G T PP L+E++L+S M+K GIGTDA++ HI + +R Y + +
Sbjct: 440 RIEVLRVELYEGNTAPPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRK 499
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G L+ GY + +L P++RS +E + V+ G + V+ + +QQ + F
Sbjct: 500 MVPTALGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQADHSHVVQHVIQQFRRKF- 558
Query: 603 DARLKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
V+ +E M FE ++S D +G + +CG C
Sbjct: 559 ---SYFVQQIEHMDALFEAQFSPLAD---SGRALSKCGKC 592
>gi|124513658|ref|XP_001350185.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
gi|23615602|emb|CAD52594.1| DNA topoisomerase III, putative [Plasmodium falciparum 3D7]
Length = 710
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 212/344 (61%), Gaps = 5/344 (1%)
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
F+W R LFD+ + ++IYE ++ P +T V + E KY PYPL+T+++ K S YF++
Sbjct: 342 FTWSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPLNTLQMTKLVSIYFKI 401
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
SS+ M +AE LY G+ISYPRTET+ F NLH I+ E + ++G YA +L +
Sbjct: 402 SSKECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKNDNFGWYANKLCEEHK- 460
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
++ P G +DKAHPPIHP K + + + +KLYE + +HFLA S A+G T V
Sbjct: 461 -YQKPRKGKMNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHFLAVCSNDAIGYNTKV 519
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
I E F G I KNYL++Y +E W +IP++ +F PT+L ++ G+T+PP
Sbjct: 520 TAKIQEEQFFCKGLKIKEKNYLEIYTYEKWNDKIIPSFQVDDEFYPTSLLIEEGITQPPK 579
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY---D 557
LSE++LL+ MDK IGTDATMH+HI+ + R Y IK++ + F PTN+G ALV Y
Sbjct: 580 YLSESNLLTLMDKFSIGTDATMHEHIENIQKRNYVIKNSKSLFIPTNLGIALVQSYKKFK 639
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
D+G +L P+LR+ ME DM V+ G K K +++ N + MK +
Sbjct: 640 DIGIDLTDPSLRAKMEKDMSLVASGVKQKNEIIRNYIDIMKYIY 683
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 174/245 (71%), Gaps = 6/245 (2%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEKPSVA S+A ILSK + +I+ S+YN ++ F+Y I+ +M +TSVTGH
Sbjct: 4 LKVLNVAEKPSVASSIAEILSKGRPNKIKSC-SKYNPVFTFDYKIKNDIWYMYVTSVTGH 62
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L + FD+RY+ WH+ DP +L+ A + +V +DKK+I+ L++ ++ C L+LWLDCDRE
Sbjct: 63 LTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSKECNMLILWLDCDRE 122
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I FEVI CR N L++ RA+FSA+ +++I A+ NL +PN+ A +VD R+EIDL
Sbjct: 123 GEHICFEVINACRITNRKLIIHRAQFSAVTEKDIIHAINNLKEPNKNLAYSVDVRREIDL 182
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+G+ FTRF T+ +I+ V + + ++SYGPCQFPTLGFVV RY +I+ ++E +W+
Sbjct: 183 RMGSIFTRFMTIR----YIELVKHETS-IISYGPCQFPTLGFVVNRYLDIKNFKNEYYWS 237
Query: 248 INCSH 252
I +
Sbjct: 238 IKMKY 242
>gi|302497521|ref|XP_003010761.1| hypothetical protein ARB_03463 [Arthroderma benhamiae CBS 112371]
gi|291174304|gb|EFE30121.1| hypothetical protein ARB_03463 [Arthroderma benhamiae CBS 112371]
Length = 473
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 256/476 (53%), Gaps = 46/476 (9%)
Query: 156 LIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNL 215
I R + +A + + ++ DAV AR E+DLRIGA+FTR QT+ L+ + +R +
Sbjct: 16 FIYRHVLEAARRPIGLDERQVDAVAARIELDLRIGAAFTRLQTLQLQT--LGGALAERTI 73
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAV 275
SYG CQFPTLGFVV+RY ++ + E FW+I SH + T F+W RGHLFD + V
Sbjct: 74 --SYGSCQFPTLGFVVDRYMRVKNFKPEAFWSIKVSHTRDGITVNFNWQRGHLFDRAAVV 131
Query: 276 IIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA 335
+++E C+ TATVTKV ++ K+ P PL+T++L+ S+Y R+ S+ MK
Sbjct: 132 VLFERCLAAKTATVTKVNKKPTSKWRPLPLTTVDLQMMGSKYLRIDSQAIMK-------- 183
Query: 336 GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395
F + +L +V++Q WG YA+ L+ G ++ P G ++DKAH
Sbjct: 184 ------------FDNEIDLKKLVEKQYPSEAWGEYARGLI---GGGFKQPRRGRNNDKAH 228
Query: 396 PPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRV 455
PPIHP + S + + + K+YE V R FLAC S+ A G T +EI E F T G +
Sbjct: 229 PPIHPVVYVS-PTVLNTNEKKVYEFVTRRFLACCSEDAKGESTDIEIQYGDEEFHTRGLI 287
Query: 456 ILAKNYLDVYRFESW-GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+L +NYLDVY ++ W +P +V + F P + G T P L+E +L+ MD
Sbjct: 288 VLERNYLDVYVYDKWESSQPLPNFVLNESFEPKEANITEGKTVAPGYLTEPELIGLMDAN 347
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANT----------RFAPTNIGEALVMGYDDMGY--- 561
GIGTDATM +HI K+ R Y F PT +G ALV GYD++
Sbjct: 348 GIGTDATMAEHISKIKAREYVATRPRGGGRGSGGRVDEFIPTKLGVALVEGYDNVVAGLP 407
Query: 562 ---ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEA 614
L KP LR ME M ++ G K+KA+V+ + F + ++++LL+
Sbjct: 408 DCPSLTKPFLRKEMELRMGDICSGTKTKAEVVRQNVDMYSEVFTHTQ-QRIELLKV 462
>gi|352682630|ref|YP_004893154.1| topoisomerase (DNA) III alpha [Thermoproteus tenax Kra 1]
gi|350275429|emb|CCC82076.1| topoisomerase (DNA) III alpha [Thermoproteus tenax Kra 1]
Length = 606
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 197/602 (32%), Positives = 303/602 (50%), Gaps = 36/602 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKI-----YEFNYSIRGQPCHMLMTSV 64
+L VAEK SVA+++A L+ + Y KI Y F Y R + +
Sbjct: 1 MLIVAEKRSVAQAIAKYLATSYS---------YFKISGVMAYRFKYKDR----QAVSLGL 47
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK--TLEEEARRCQWLVLWL 122
+GH+++ DF + KW++ +P +L+ + VP D+ IK L AR + L L
Sbjct: 48 SGHILDFDFPQELNKWNALEPVELFDK-ITVLVPRDE-TIKYLYALRALARDEDEVYLAL 105
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
D D EGE IA+EV+ RAVN +R RF+A+ ++I QA + V+ + + V AR
Sbjct: 106 DADSEGEAIAYEVVLQVRAVNPRARFKRVRFNAVTKKDIVQAFERPVELDLKVVEKVFAR 165
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
DL IGA+FTR T+ ++ +D+ LSYGPCQ P LG VV R E +
Sbjct: 166 MVSDLTIGAAFTRLLTLAVR--EVDNKALPFGKFLSYGPCQTPVLGLVVSRELERLNFKP 223
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
EE++ + ++E G+ R F + V + R +E PP
Sbjct: 224 EEYYVVKGIVETEAGSFE---ARSRPFKAREEAEAAVRAARVSLGKVIEARFEETRVKPP 280
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL T+ELE+RAS++ + ++ + AE+LY+ G+ISYPRTET + +L +++E +
Sbjct: 281 APLDTVELERRASKWLNIRAKAALDTAEELYRRGYISYPRTETTIYPPTLDLRAVLEE-L 339
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSG---ESRWSQDHYKLYE 419
+ +G YA+RLL +P G DD+AHPPI+PT+ ++ E +KLYE
Sbjct: 340 TNTQFGQYAERLLRGPI----SPTRGNSDDRAHPPIYPTRGATKAEVERALGTRAWKLYE 395
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
VVRHFLA +S PA+ + + V GR I+ + Y ++Y +E +P
Sbjct: 396 FVVRHFLATLSPPAIVERQRIAVAFGPLVLEAEGRRIIERGYWEIYPYEEEEDRRLPRVQ 455
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G + ++ T PPP +SE++LL M K GIGTDATM DHI + R Y ++
Sbjct: 456 AGVWARMVSAKIEKKKTEPPPRMSESELLRLMKKYGIGTDATMQDHIHTNVIRGY-MRIV 514
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
R PT +G L + + P +RS ME+ +++++VG VL + K
Sbjct: 515 GGRCVPTKLGMTLASSLMNHARPIIDPTVRSKMEAALQDIAVGRADVKKVLETIRGEFKT 574
Query: 600 CF 601
+
Sbjct: 575 FY 576
>gi|435851915|ref|YP_007313501.1| topoisomerase IA [Methanomethylovorans hollandica DSM 15978]
gi|433662545|gb|AGB49971.1| topoisomerase IA [Methanomethylovorans hollandica DSM 15978]
Length = 791
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 224/708 (31%), Positives = 344/708 (48%), Gaps = 45/708 (6%)
Query: 1 MAGGGRPINVLNVAEKPSVAKSVAGILSKNQGLR-IREGRSRYNKIYEFNYSIRGQPCHM 59
+ G G + V+ EK A +A ILS + R + EG +Y F + GQ +
Sbjct: 7 LQGAGYIMTVVVFTEKNKAASQIANILSGGKPDRKLVEGVP----VYMFRRN--GQEWQV 60
Query: 60 LMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
+ ++GH+M DF + W S DPA L K V KK + AR ++
Sbjct: 61 M--GLSGHIMGYDFPQELNNWRSVDPAILIDTRPIKTV--TKKPFADAIISLAREADAII 116
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
L D DREGENI FE E+ V+ ++RARFS+L D EI +A N V+P+ A +
Sbjct: 117 LACDFDREGENIGFEAKELASRVS-RAPVKRARFSSLSDSEIIKAFDNPVEPDAAMAMSA 175
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
+ARQ +DL++GA+FTR+ T+ ++ + T + +LS GPCQ PT GFV ER I+
Sbjct: 176 EARQILDLKMGAAFTRYLTLAVRE---RARTKE---ILSIGPCQTPTCGFVYERDKAIKE 229
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
E+FW I +++ G++ D A I++ T VTK E
Sbjct: 230 FNPEDFWKIEALFHAKDMDFKGVHRAGNIKDKAKAAEIFDRIRAGKTGLVTKKSVTEIKT 289
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
PYPL+T E KRAS++ +S E +++AE LY GF SYPRTET+ ++ + V
Sbjct: 290 NAPYPLNTTEFLKRASKFLNISPESALEIAEQLYLNGFTSYPRTETNKYADDFDFKSKVI 349
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS----GESRWSQDHY 415
++ +A +L + RN GHD HPPIHP K + ++ ++
Sbjct: 350 -AFTSTEYRDHALAILSGGDIVVRNGIKDGHD---HPPIHPIKAVAVKEVEKAVKTEGAG 405
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
K+Y+L+ RHFLA + A+ +T +EI + E+F +SG ++ + ++ VY FE+ ++
Sbjct: 406 KIYDLIARHFLANLMPAALFEKTHLEITVEKELFDSSGSIMKNEGWMVVYPFETKNDKLL 465
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P + L + T PP L+EA+LL+ MDK GIGT AT HI+ R Y
Sbjct: 466 PDIKEQDEVKVKKLENIASKTTPPKHLTEAELLTLMDKHGIGTKATAPSHIETNKKRGY- 524
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYEL---WKPNLRSMMESDMKEVSVGNKSKADVLAN 592
T+ I E + D + + KP +R+ +ES ++EV G+K +A
Sbjct: 525 ---FETKGKTIVIQETGFILMDALSTSIPVVVKPEIRASIESLVQEVEDGSKDLEHAVAE 581
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGG-EDQQAAGEVVRQCGICQESNMVLK-K 650
+ +K + +L E+ R +G D A + G C + VL+
Sbjct: 582 GTELIKMMY-------SRLTESRDSIVSRLAGSINDGTATDDKKNYIGKCPDCGRVLRII 634
Query: 651 SRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
S + VGC +PQCRN+ LP E A++ +C G +I+
Sbjct: 635 STEKGRFVGCTGYPQCRNSYPLP---REGALSVLRSKNCKKGGAAVIK 679
>gi|300175415|emb|CBK20726.2| unnamed protein product [Blastocystis hominis]
Length = 891
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 219/659 (33%), Positives = 314/659 (47%), Gaps = 50/659 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A SVA ILSK ++ I+ F+ G+ +TSV GH+
Sbjct: 6 VLMVAEKPSIAGSVANILSKGT----HTTKTGKLPIHIFDGEFLGKQVTFKVTSVVGHVF 61
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDF Y+ W D DL+ A E + L ++VLWLDCD EGE
Sbjct: 62 NLDFAPEYQNWEKTDCLDLFSAKTIHK--EASGGVIHHLRSVGANVDYVVLWLDCDNEGE 119
Query: 130 NIAFEVIEVCRAV--NCHLVLR--RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
NI FEV+ + V N R RA +SA+ +IH+A++ L DPN+ A AVDARQE+
Sbjct: 120 NICFEVLNCVKPVMKNWRETKRIYRAYYSAITAPDIHKAMRTLKDPNENEAHAVDARQEL 179
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DL++G +F+RFQT +N + +D + V+SYGPCQ PTLGF V+R+ IQ + E F
Sbjct: 180 DLKVGVAFSRFQTQFFRNKY----SDLDSSVISYGPCQIPTLGFCVDRFDLIQNFKGEAF 235
Query: 246 WTINCS---------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
+ S H+ E+ + + + S + + TV VR+
Sbjct: 236 PRFHFSPAALLDAERHRQEKLPRSPALLGARP---ASFFVFSRKLASVSSLTVLSVRESN 292
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
+ P P++T+ + K ASR M + AE LY G+ISYPRTET ++ NL G
Sbjct: 293 GARVRPVPMNTVTMLKLASRSLGMGPKEATVYAERLYLKGYISYPRTETTAYPEHYNLLG 352
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
V++ +P WG Y L+ AG R P G D HPPI P S S
Sbjct: 353 AVEQHRTNPRWGGYVNALI---AGGLRVP-RKGVDAGDHPPITPV-VSVDPSTLPSGESA 407
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY--RFE------ 468
LY+L+ HFLA VS T V E FS S R + + +Y +FE
Sbjct: 408 LYDLIATHFLATVSDDCKFVTTFVRFGGGDETFSYSYRRVTQPGFTALYHSQFEDESDDE 467
Query: 469 ---SWGGLVIPTYV--HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
S L + Y G+ + G T P L+E++L+S M+K GIGTDA++
Sbjct: 468 NDASEAELAMEAYSFQKGEVVEVDRIAERDGYTSAPGYLTESELISLMEKNGIGTDASIP 527
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
HI +L+R Y PT +G L+ G + EL P +R +E + ++ G
Sbjct: 528 VHIANILERNYVSLGPKRTLIPTKLGIVLIHGIYSIDPELVLPIVRGNIEKECALIAKGK 587
Query: 584 KSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
DV+ + L K F+ K + + +F +S D +G+ + +CGIC+
Sbjct: 588 AKMDDVVDHALLVFKQKFI---YFKEHIADMDALFESEFSLLVD---SGKPLSRCGICK 640
>gi|312381313|gb|EFR27087.1| hypothetical protein AND_06414 [Anopheles darlingi]
Length = 1456
Score = 295 bits (754), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 189/518 (36%), Positives = 264/518 (50%), Gaps = 40/518 (7%)
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF 348
V V ++ K K+ P P+ T+ELEK SR +M+++H M +AE LY G ISYPRTET+ F
Sbjct: 734 VVNVTEKPKNKWRPTPMDTVELEKLGSRKLKMNAKHVMTIAEKLYTQGIISYPRTETNMF 793
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES 408
+S NL +VQ Q+ + WG +A+++L+ NP +G D+AHPPIHPTK +
Sbjct: 794 TSDMNLVPLVQAQVANQQWGSFAEKVLEWGV----NPRNGKKSDQAHPPIHPTKLPTN-- 847
Query: 409 RWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV-FSTSGRVILAKNYLDVYRF 467
S D +++YEL+ RHFLACVS+ A G+ETIV + +A E F+ SG I +NYL+VY +
Sbjct: 848 -LSGDEWRVYELIARHFLACVSRDATGSETIVNVVVADEEEFTASGLCIYERNYLEVYPY 906
Query: 468 ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
+ W I Y G F PT L L G T P +L+EADL++ M+K GIGTDAT +HI
Sbjct: 907 DRWNAKEIHVYRVGHTFEPTELGLHEGSTTAPNMLTEADLIALMEKHGIGTDATHAEHIN 966
Query: 528 KLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKA 587
+ +R Y + P +G LV GY+ M L P LR+ +E+D+K + G K A
Sbjct: 967 TIKERGYIGERDRGFLVPGTLGMGLVEGYEMMELRLAHPELRAGLEADLKLICEGRKDPA 1026
Query: 588 DVLANCLQQMKACFLDARLKKVKLLEAMGIFFER------------WSGGEDQQAAGEVV 635
VLA + + K + K L A+G + A+ + V
Sbjct: 1027 AVLAEQVSKYKEVYRIMSRKAQALDRALGQRLNQTPRDPPPDGGGGGGAIAIGGASLKEV 1086
Query: 636 RQCGICQESNMVLKKSRDGN-LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+C C E M L++ RDGN +GC+AFP C+N+VW S+ EA VT + C C
Sbjct: 1087 CKCPKCGE-KMCLRQKRDGNGYHLGCVAFPNCKNSVWFDDSIREATVTDDACARCGSKK- 1144
Query: 695 YLIQFKFRQHE----IPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSN 750
I KFR + + CI CD R L+ I R A R P +N
Sbjct: 1145 --ITVKFRNMHYYGLLQSTSMTEYRTCI-VCDSKFRGLLNINEASVRQVAPPRAPI--TN 1199
Query: 751 NGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRNARAN 788
+ N R G + SG R+A N
Sbjct: 1200 GWEAVNQTNRVPTPANSSGST--------SGVRSASGN 1229
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 145/214 (67%), Gaps = 3/214 (1%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
G + LNVAEK AK+++G+LS+ R REG S YNKIYEF+Y++ GQ M+MTSV
Sbjct: 526 GEKMKYLNVAEKNDAAKTISGLLSRGTSNR-REGFSPYNKIYEFDYNLHGQSIKMVMTSV 584
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
+GHL+ +F +R W SC P DL+ APVRK PE IK+TLE E R C L++W DC
Sbjct: 585 SGHLLNHEFLPSFRGWQSCSPEDLFDAPVRKSCPESYDKIKRTLEREVRGCTALIIWTDC 644
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGENI FE+IEVC+A+ L + RA+FS + I +A++NL+ P+ AV+ R E
Sbjct: 645 DREGENIGFEIIEVCKAIKPQLKVLRAKFSEITGPSIKRAIENLIQPDARQNAAVNVRSE 704
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLS 218
+DLRIGA+FTR+QT+ L+ ++D NLV++
Sbjct: 705 LDLRIGAAFTRYQTLRLQKVFPQDISD--NLVVN 736
>gi|327310010|ref|YP_004336907.1| DNA topoisomerase [Thermoproteus uzoniensis 768-20]
gi|326946489|gb|AEA11595.1| DNA topoisomerase [Thermoproteus uzoniensis 768-20]
Length = 602
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 201/596 (33%), Positives = 295/596 (49%), Gaps = 24/596 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L VAEK SVA+++A L G S Y F Y + ++GH++
Sbjct: 1 MLIVAEKRSVAQAIAKYLGGTYSSFKVSGVS----AYRFKYD----GASAVSLGLSGHIL 52
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF + +W + DPA L+ A V PE K + L AR + L LD D EG
Sbjct: 53 DFDFPQEMNRWGAVDPARLFDEAVVLTPRPETLKYLY-ALRSLARGQDVVYLALDADSEG 111
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E IA+EV+ R VN +R RF+A+ EI +A VD + + V AR DL
Sbjct: 112 EAIAYEVVLQVRVVNPAARFKRVRFNAVTKAEITRAFARPVDLDLKVVEKVFARMASDLT 171
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTR T+ ++ DS LSYGPCQ P LG VV R E + EE++ +
Sbjct: 172 IGAAFTRLLTLSVRRE--DSSALPFGKFLSYGPCQTPVLGLVVSRELERLNFKPEEYFVV 229
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ G MR F ++ + + R ++ PP PL T+
Sbjct: 230 RAVVGTGGGEVE---MRSKPFKRREEAEAALAAARKAEGRIAEARYEKAEVRPPVPLETV 286
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELE+RASR+ + ++ + +AE+LY+ G+ISYPRTET + +L I++E P +G
Sbjct: 287 ELERRASRWLNIRAKAALDIAEELYRLGYISYPRTETTIYPPTLDLRAILEELRNTP-FG 345
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSG---ESRWSQDHYKLYELVVRHF 425
YA+ LL P G DD AHPPIHPT+ + E+R Q +K+YELVVRHF
Sbjct: 346 QYAEDLLRRPF----TPTRGRSDDGAHPPIHPTRGAGRGEIEARLGQRGWKIYELVVRHF 401
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LA +S PAV + V GR +++K Y VY +E +P G
Sbjct: 402 LATLSPPAVVERQRIAAAFGPLVLEAEGRKVISKGYWTVYPYEEEEEEPLPYVKRGDPAE 461
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ ++ +T PPP ++E++LL M K GIGTDATM DHI + R Y ++ A + P
Sbjct: 462 LLSAKIERRLTEPPPRMTESELLKLMRKYGIGTDATMQDHIHTNVLRGY-MRIAGGKCIP 520
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T +G +L + P +RS ME+ ++E++ G + V+A ++ K +
Sbjct: 521 TPLGMSLATALMKHARPIIDPEVRSKMEAALQEIAAGRMDPSKVVAAIREEFKKYY 576
>gi|171186180|ref|YP_001795099.1| DNA topoisomerase type IA central domain-containing protein
[Pyrobaculum neutrophilum V24Sta]
gi|170935392|gb|ACB40653.1| DNA topoisomerase type IA central domain protein [Pyrobaculum
neutrophilum V24Sta]
Length = 604
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 204/603 (33%), Positives = 306/603 (50%), Gaps = 46/603 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK SVA+++A L G + GR Y F Y G+ L ++GH+M+
Sbjct: 3 LIVAEKRSVAQAIARYL----GGSYKSGRLYGVPFYSFTYL--GREAAAL--GLSGHIMD 54
Query: 71 LDFDERYRKWHSCDPADLYHA-PVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF R W P +L+ A PV PE +K L A++ + + L LD D EGE
Sbjct: 55 YDFTARENVWTWIPPEELFRATPVLVFRPETANYVK-ALRSLAKKAERVYLALDADVEGE 113
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
IA+E V + VN + R RF+A+ R++ A Q + + V R +IDL +
Sbjct: 114 AIAYEAALVVKLVNRRAEIYRVRFNAVTYRDVRSAFQKPTKLDLRQVEKVFTRMQIDLTL 173
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA FTRF T+ ++N + +R LSYGPCQ P LG VV R + + + E+++ I
Sbjct: 174 GAVFTRFLTLTVRN------SLERGRFLSYGPCQTPVLGIVVTRELQRRNFKPEKYYVIK 227
Query: 250 C-----SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
H E A+ + T+A + V+ T V +Q ++ PP P
Sbjct: 228 ALVEIGGHAVE--MASTERFKTRREAETAAASVKRGVVK------TAVYRQHAVQ-PPEP 278
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L T+ELE+RASR+ +SS+ + AE+LY+AG+ISYPRTET + S +L +++E G
Sbjct: 279 LETVELERRASRWLGISSKKALDTAEELYRAGYISYPRTETTIYPSTLDLREVLKELAGG 338
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GE-----SRWSQDHYKLY 418
+ GPYA+ LL P G DD AHPPI+PT+ ++ GE + + + +Y
Sbjct: 339 -EHGPYAEELLKRGF----KPTRGDSDDGAHPPIYPTRGATQGEIYKVFGKLGRQAWAIY 393
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
+LVVRHFLA +S PA+ + + G G+ + + Y +Y +E +P
Sbjct: 394 DLVVRHFLATLSPPALVEKQRIVATFGGVELEAEGQRTIEEGYWRIYPWERQRDKPLPRV 453
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + T PPP +SE++LL+ M K GIGTDATM DHI + R Y ++
Sbjct: 454 EAGEAAKAIRVEVVERETEPPPQMSESELLALMKKYGIGTDATMQDHIHTNVKRGY-MRL 512
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
+ PT +GEAL EL +P +R+ ME +++V G A +Q++K
Sbjct: 513 QRGKCIPTKLGEALATALFQYAPELIEPTVRAKMEKALQDVVRG----AAAPTRLIQEIK 568
Query: 599 ACF 601
F
Sbjct: 569 DEF 571
>gi|379003817|ref|YP_005259489.1| Topoisomerase IA [Pyrobaculum oguniense TE7]
gi|375159270|gb|AFA38882.1| Topoisomerase IA [Pyrobaculum oguniense TE7]
Length = 602
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 198/617 (32%), Positives = 312/617 (50%), Gaps = 48/617 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L VAEK SVA ++A L L +G + Y FNY R + ++GHLM
Sbjct: 2 ILIVAEKRSVAHAIAKFLGGGYKLEKIQGVA----AYRFNYGGR----EAVALGLSGHLM 53
Query: 70 ELDFDERYRKWHSCDPADLYHA-PVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF R W P +L+ + P+ + PE K +K L A R + L LD D EG
Sbjct: 54 DFDFAARQNVWTWIPPEELFASQPLIVYRPETMKYVK-ALRTLAARTHEVYLALDADVEG 112
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E IA+E + R +N + R RF+A+ REI A +N N + V R ++DL
Sbjct: 113 EAIAYEAALLVRLMNPRAKIYRVRFNAVTQREITNAFRNPTHINLRMVEKVFTRMQVDLT 172
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
+GA FTRF T+ +++ + DR LSYGPCQ P LG VV R + + + E+++ +
Sbjct: 173 LGAVFTRFITLAVRH------SLDRGQFLSYGPCQTPVLGIVVTRELQRRNFKPEKYYVV 226
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAV-IIYEMCVQEPTATVTK-VRQQEKLK----YPP 302
+ GH + ++ V +E AT+++ V + K PP
Sbjct: 227 KA----------LVEIDGHRIEMSADVRFKTRKEAEEAAATISRGVVKAAVYKPHHVNPP 276
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
PL T+ELEKRASR+ ++S+ T+ +AE+LY+ G+ISYPRTET + +L ++QE
Sbjct: 277 VPLETVELEKRASRWLGINSKRTLDIAEELYRGGYISYPRTETTIYPPTLDLREVLQELA 336
Query: 363 -GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GE-----SRWSQDHY 415
GH G YA L+ P G DD+AHPPI+PT+ ++ GE + + +
Sbjct: 337 SGH--LGYYADELMSRGF----RPTRGDSDDRAHPPIYPTRGATKGEIAKTFGKLAPQAW 390
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
+Y+ VVRHFLA +S PAV + + ++ G++++ + Y +Y +E +
Sbjct: 391 AIYDFVVRHFLATLSPPAVVEKQKIVVSFGKLEMEAEGQIVVDEGYWRIYPWERQSSKPL 450
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P G+ + + T PPP ++E++LL+ M K GIGTDATM DHI + R Y
Sbjct: 451 PRVSPGEPARAVKVYVVERETEPPPQMTESELLALMKKYGIGTDATMQDHIHTNVRRGY- 509
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+K + PT++G AL +L +P +R+ ME + + A ++ +
Sbjct: 510 MKITKGKCIPTDLGIALATSLFQFAPQLIEPTVRAKMEKALNSIVTDGTPPARLIYEIKK 569
Query: 596 QMKACF--LDARLKKVK 610
+ + + L AR +++K
Sbjct: 570 EFEEYYKALKARKEEIK 586
>gi|448613477|ref|ZP_21663357.1| DNA topoisomerase I [Haloferax mucosum ATCC BAA-1512]
gi|445740374|gb|ELZ91880.1| DNA topoisomerase I [Haloferax mucosum ATCC BAA-1512]
Length = 840
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 204/689 (29%), Positives = 330/689 (47%), Gaps = 52/689 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETATA-----ERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L AR+ + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELISAPVEKHPT--QENIVAALRRLARKAGNVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ +RE+ +A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D +A YE + TA VT V+++ +
Sbjct: 226 KLTKDADGAAESFEAQYFYLDDDGTEAERIWDEEAAESAYETVLDVETAEVTAVKRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DKPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S S+D + +Y
Sbjct: 345 GAFEGDRRFKDDAKSLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLSEDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V AG +G+ +L Y +VY + + +P
Sbjct: 402 ELVVRRFFATVAENAVWEHLRVVAEAAGLSLKANGKRLLEPGYHEVYPYFNSTESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGESLVLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + L N ++ K
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEAT----LENVTEESK 574
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMV 658
A D ++ E +G +D A + V C C ++V++KSR G+ +
Sbjct: 575 AMLEDVFEGLMESREELGTQL------QDSLKADKTVGTCPDCG-GDLVVRKSRRGSYFI 627
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
GC ++P C + + LP S + + + C
Sbjct: 628 GCDSYPDCTHTLPLP-STGKPLIMEDACE 655
>gi|448589917|ref|ZP_21649976.1| DNA topoisomerase I [Haloferax elongans ATCC BAA-1513]
gi|445735032|gb|ELZ86585.1| DNA topoisomerase I [Haloferax elongans ATCC BAA-1513]
Length = 855
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 203/691 (29%), Positives = 328/691 (47%), Gaps = 56/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L AR+ + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELISAPVEKHPT--QENIVAALRRLARKAGNVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ RE+ +A +N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVPVDRVRFSSITKREVTEAFENPDELDFDLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D +A YE + A VT V+++ +
Sbjct: 226 KLTKDADGAAESFEAQYFYLDDDGTEAERIWDEDAAQAAYEDLLSVDAAEVTAVKRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DKPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S S+D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLSEDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V AG +G+ +L Y VY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAEAAGRTLKANGKRLLEPGYHAVYPYFNSTESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G++ + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGEELQLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G S DV + ++
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMMAIARGEASLEDVTEESKEILE 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C E ++V++KSR G+
Sbjct: 579 DVF-------------EGLMESREELGKQLQDSLKADKTVGPCPECGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+GC ++P C N + LP S + + +TC+
Sbjct: 626 FIGCDSYPDCTNTLPLP-STGKPLIMEDTCD 655
>gi|159040701|ref|YP_001539953.1| DNA topoisomerase type IA central domain-containing protein
[Caldivirga maquilingensis IC-167]
gi|157919536|gb|ABW00963.1| DNA topoisomerase type IA central domain protein [Caldivirga
maquilingensis IC-167]
Length = 610
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 200/592 (33%), Positives = 295/592 (49%), Gaps = 41/592 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
++ L VAEK SVAK++A L++ G +R R + + + + G+ + + GH
Sbjct: 1 MDKLIVAEKNSVAKAIAQYLAEG-GYTLR----RIGIVPVYFFKVNGE--YWASMGLRGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYH-APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+++ DF+ Y W+ +P L PV D+ + L E +++ + ++L LD D
Sbjct: 54 ILDFDFEHSYNNWNRVEPGKLLDLEPVMVIRGWDRPYVT-ALVELSKQAREIILALDSDV 112
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE IA+EV+ V R L RRA FSA+ +I +A L N A V R ID
Sbjct: 113 EGEAIAYEVMLVTRLRKPTLRFRRALFSAVTRDDIRRAFSKLTTINVNLARKVFTRMVID 172
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L+ GA+FTR T+ K+ +R LSYGPCQ P L VV+R E + + E ++
Sbjct: 173 LKYGATFTRLLTLSAKS---SKAPLNRGEFLSYGPCQTPVLNLVVQRALERENFKPEVYY 229
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMC--------VQEPTATVTKVRQQEKL 298
I ++ G L + S + V+ A V + +
Sbjct: 230 KIKLIIEAN----------GELIELESIDKFKNLKEAQEALSRVKAGKAVVKNIEAKRVH 279
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP PL T+ELE+RASR+ + S+ T+ AE+LY+ G+ISYPRTET+ + +L GI+
Sbjct: 280 VNPPKPLETVELERRASRFLNIRSKQTLDAAEELYRQGYISYPRTETNIYPPTLDLRGIL 339
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ----DH 414
+ +G YA+ LL AG R P +G +D AHPPIHP K + ++ +
Sbjct: 340 RNLTSTSTYGQYARHLL---AGELR-PTAGKDNDNAHPPIHPVKAADKPELMARFRDFKY 395
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
+ +Y+LVVRHFLA +S PA+ E + ++ G +F SG I+ Y +Y FE
Sbjct: 396 WLIYDLVVRHFLATLSPPALIEEQRLTVDAGGVLFEASGLRIINDGYFTIYPFERPRANP 455
Query: 475 IPTYVH--GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+P G Q + T PPP LSE++LL M K GIGTDATM DHI + R
Sbjct: 456 LPLSALRIGMQVTVKDAKVVKRKTTPPPYLSESELLRLMRKYGIGTDATMQDHIHTNVKR 515
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNK 584
Y K + PT +G+AL+ L PN RS MES + + G +
Sbjct: 516 RY-FKIIKGQCVPTPLGKALITSLSKYAPTLIDPNFRSRMESMLSLIGSGKE 566
>gi|357489371|ref|XP_003614973.1| DNA topoisomerase [Medicago truncatula]
gi|355516308|gb|AES97931.1| DNA topoisomerase [Medicago truncatula]
Length = 438
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 172/438 (39%), Positives = 238/438 (54%), Gaps = 22/438 (5%)
Query: 167 NLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPT 226
+L D N DAV R+E+D + G +T FQ+ L + + + NL LSYG CQ
Sbjct: 9 SLDDLNPCLLDAVAYRKEVDFKTGRVWTWFQSFLARK----QIPNATNLTLSYGLCQSAL 64
Query: 227 LGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFS---WMRGHLFDYTSAVIIYEMCVQ 283
LG VVER+ ++ +++++ I+ + + TF+ W +D S
Sbjct: 65 LGIVVERFNQVAKPKAQKY-NISFNDRGYGPKVTFTSPVW-----YDAKSKASKKLQSCS 118
Query: 284 EPTATVTKVRQQ--EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
+ AT+ +V + K PP PL+T+ELEK A++YF+M+ + TM AEDLY FISYP
Sbjct: 119 DEKATIVEVFVEITNKFHSPPVPLTTMELEKFAAKYFKMTPKQTMDTAEDLYTQRFISYP 178
Query: 342 RTETDSFSSGTN-LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHP 400
RTETD FS T L IV +Q H WG YA LLD GLWR+P + H D +HPPIHP
Sbjct: 179 RTETDGFSMNTKELRSIVSKQTKHEKWGSYASDLLDSNKGLWRDPRACKHTDHSHPPIHP 238
Query: 401 TKFSS-GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAK 459
KFS+ ES W LYEL+VRHFLAC+S+ A+ +T VE+++AG+ F +
Sbjct: 239 IKFSNRKESGWKDHQCVLYELIVRHFLACLSEDALVQKTTVEVDLAGQQFFAMTMTLYKL 298
Query: 460 NYLDVYRFES--WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
Y +Y +ES G P Y G + P L + P LS+ DLLS M + IG
Sbjct: 299 GYRKMYHYESLFLGFSKFPPYTAGGELTPMDLIVKGSTYSSPQNLSDEDLLSRMQQERIG 358
Query: 518 TDATMHDHIKKLLDRFYAIK--DANT-RFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
TD+T H I ++ R Y + D NT R+ PT +G AL GYD M LWKP +R+ ME
Sbjct: 359 TDSTWHLLINTVIGRKYVERKFDGNTWRYEPTKLGLALFNGYDQMKLPLWKPEMRAKMEK 418
Query: 575 DMKEVSVGNKSKADVLAN 592
+ + G +K D L +
Sbjct: 419 QITMIKNGTATKKDCLRD 436
>gi|145591572|ref|YP_001153574.1| DNA topoisomerase [Pyrobaculum arsenaticum DSM 13514]
gi|145283340|gb|ABP50922.1| DNA topoisomerase [Pyrobaculum arsenaticum DSM 13514]
Length = 602
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 198/622 (31%), Positives = 311/622 (50%), Gaps = 58/622 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKI-----YEFNYSIRGQPCHMLMTSV 64
+L VAEK SVA ++A L GR + KI Y FNY R + +
Sbjct: 2 ILIVAEKRSVAHAIAKFLG---------GRYKLEKIQGVAAYRFNYGGR----EAVALGL 48
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHA-PVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
+GHLM+ DF R W P +L+ + P+ + PE K I+ L A R + L LD
Sbjct: 49 SGHLMDFDFTARQNVWTWIPPEELFASQPLIVYRPETMKYIR-ALRTLAARAHEVYLALD 107
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
D EGE IA+E + R VN + R RF+A+ REI A +N N + V R
Sbjct: 108 ADVEGEAIAYEAALLVRLVNPRAKIYRVRFNAVTQREITNAFRNPTHINLRMVEKVFTRM 167
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
++DL +GA FTRF T+ +++ + DR LSYGPCQ P LG VV R + + + E
Sbjct: 168 QVDLTLGAVFTRFITLAVRH------SLDRGQFLSYGPCQTPVLGIVVTRELQRRNFKPE 221
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAV-IIYEMCVQEPTATVTKVRQQEKLKYP- 301
+++ + + GH + ++ V +E AT+ + + + P
Sbjct: 222 KYYVVKA----------LVEIGGHRIEMSADVRFKTRKEAEEAAATINRGVVKAAVYRPH 271
Query: 302 ----PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
P PL T+ELE+RASR+ ++S+ T+ +AE+LY+AG+ISYPRTET + +L +
Sbjct: 272 HVNPPVPLETVELERRASRWLGINSKRTLDIAEELYRAGYISYPRTETTIYPPTLDLREV 331
Query: 358 VQEQI-GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GE-----SRW 410
+QE GH G YA L+ P G DD+AHPPI+PT+ ++ GE +
Sbjct: 332 LQELASGH--LGSYADELMRRGF----RPTRGDSDDRAHPPIYPTRAATKGEVAKAFGKL 385
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW 470
+ + +Y+ VVRHFLA +S PAV + + ++ G++++ + Y +Y +E
Sbjct: 386 APQAWAIYDFVVRHFLATLSPPAVVEKQKIIVSFGKLEMEAEGQLVVDEGYWRIYPWERQ 445
Query: 471 GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLL 530
+P G + + T PPP ++E++LL+ M K GIGTDATM DHI +
Sbjct: 446 SSKPLPRVSPGDPARAVKVDVVERETEPPPQMTESELLALMKKYGIGTDATMQDHIHTNV 505
Query: 531 DRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
R Y +K + PT++G AL +L +P +R+ +E + + A ++
Sbjct: 506 RRGY-MKITKGKCIPTDLGIALATSLFQFAPQLIEPTVRAKIEKALNSIVTDGTPPARLI 564
Query: 591 ANCLQQMKACF--LDARLKKVK 610
++ + + L AR +++K
Sbjct: 565 YEIKKEFEEYYKALKARKEEIK 586
>gi|308158051|gb|EFO60919.1| DNA topoisomerase III [Giardia lamblia P15]
Length = 973
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 209/657 (31%), Positives = 312/657 (47%), Gaps = 76/657 (11%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKPS+A+ ++S+N G ++ S Y F S G + TSV GH+
Sbjct: 2 ILLIAEKPSIAE----MISRNYGEGAKKLDSMSFPTYTFVQSFEGSKETFMCTSVAGHVF 57
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
E+DFD + V + + K L+ + L+L LD DREGE
Sbjct: 58 EIDFDAEFNGSSVPQERLFERGHVHYSFTDSGSTVAKHLKSIGGKATQLILCLDNDREGE 117
Query: 130 NIAFEVIEVCRAV---NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
NI FEV++V + NC + RRARFSA+ EIH A NL P+Q +DAV+ARQE+D
Sbjct: 118 NICFEVLKVLKPTLRSNCRI--RRARFSAVTKAEIHNAFCNLDKPDQNLSDAVEARQELD 175
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L+IG +FTRFQT L D ++ V+SYGPCQ PTL F V R+ EIQ ++ +
Sbjct: 176 LKIGVAFTRFQTAHLHA----QFADLQSSVISYGPCQTPTLSFCVSRHDEIQRFRPKQIF 231
Query: 247 TINCSHKSEEGTATFSWM-------------RGHLFDYTSAVIIYEMCVQEPTATVTKVR 293
+++ + W R L + ++ + + + +T+ +
Sbjct: 232 SLDVCALIGDQLCPLRWQGVPSESREVIEEKRARLLEKSATKCLKVLSFKSSKSTLPR-- 289
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
P P++T+ L K AS +S M +AE LY AG+ISYPRTE+ ++ SG N
Sbjct: 290 --------PLPMNTVALLKAASTVLGLSPNSAMALAERLYIAGYISYPRTESTTYPSGYN 341
Query: 354 LHGIV--QEQIGHPDWGPYAQRLLDHAAG------LWRNPGSGGHDDKAHPPIHPTKFSS 405
L IV ++ AQ LL + + NP G D HPPI PT
Sbjct: 342 LREIVLALKESSSTRISQSAQNLLPSSKKSVDENVRYTNPRKGT-DQGDHPPIMPTGLI- 399
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAV---GAETIVEINIAGEVFSTSGRVILAKNYL 462
S D LY L+ +HFLA VS AV + T+ +++ E F S ++ + +
Sbjct: 400 -PHGVSGDELSLYNLITKHFLATVSPDAVYGHSSLTLQSVDVPSETFLFSVTEVIDQGWK 458
Query: 463 DVYRFESWGGL--------------------VIPTYVHGQQFIPTTLTLDSGVTRPPPLL 502
+Y + + + G + + +G+TRPP L
Sbjct: 459 ALYSTTEFTSMQDNDLSDDLADENLLLDKETLQAISATGATLTIASAAIKAGMTRPPAYL 518
Query: 503 SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR---FAPTNIGEALVMGYDDM 559
SE+DLL M+K GIGTDA+M HI ++ R Y R PT++G +L+ GY +
Sbjct: 519 SESDLLGLMEKHGIGTDASMATHIGNIVTRAYVELRVTGRRRCLVPTSMGISLIHGYQLI 578
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLAN-CLQQMKACFLDARLKKVKLLEAM 615
+L P LR+ +E D+ ++ G K K DVL N L + FL+ + + + LEA+
Sbjct: 579 DGDLSSPQLRASIERDVTRIAEG-KIKKDVLVNQVLSKFLTKFLNFK-QNISKLEAL 633
>gi|448579765|ref|ZP_21644759.1| DNA topoisomerase I [Haloferax larsenii JCM 13917]
gi|445723101|gb|ELZ74751.1| DNA topoisomerase I [Haloferax larsenii JCM 13917]
Length = 852
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 202/691 (29%), Positives = 327/691 (47%), Gaps = 56/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L AR+ + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELISAPVEKHPT--QENIVAALRRLARKAGNVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ RE+ +A +N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVPVDRVRFSSITKREVTEAFENPDELDFDLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D +A YE + A VT V+++ +
Sbjct: 226 ELTKDADGAAESFEAQYFYLDDDGTEAERIWDEDAAQEAYEDLLGVDAAEVTAVKRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DKPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S +D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLDEDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V AG +G+ +L Y VY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAEAAGRTLKANGKRLLEPGYHAVYPYFNSTESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G++ + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGEELQLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G S DV + ++
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMMAIARGEASLEDVTEESKEILE 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C E ++V++KSR G+
Sbjct: 579 DVF-------------EGLMESREELGKQLQDSLKADKTVGPCPECDGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+GC ++P C N + LP S + + +TC+
Sbjct: 626 FIGCDSYPDCTNTLPLP-STGKPLIMEDTCD 655
>gi|426393714|ref|XP_004063158.1| PREDICTED: DNA topoisomerase 3-beta-1 [Gorilla gorilla gorilla]
Length = 653
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 168/415 (40%), Positives = 236/415 (56%), Gaps = 20/415 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES----RWSQ 412
HP W +RLL A G+ N GHD HPPI P K ++ RW Q
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMKSATEAELAGLRWYQ 408
>gi|384490193|gb|EIE81415.1| hypothetical protein RO3G_06120 [Rhizopus delemar RA 99-880]
Length = 761
Score = 282 bits (721), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 200/640 (31%), Positives = 297/640 (46%), Gaps = 95/640 (14%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
VAEKPS+A+S++ +L+ +G I R+ ++E+ R Q TSVTGH+ LD
Sbjct: 14 VAEKPSLAESLSKLLAP-KGQFITHKRT--TPVHEWTGQFRDQSAEFQFTSVTGHVYGLD 70
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIA 132
F + + W DP L+ A K K + L+ A+ +LVLWLDCDREGENI
Sbjct: 71 FTKEHNSW-DIDPLQLFDAKTIKLESNPKMKMTYHLQNMAKGIDYLVLWLDCDREGENIC 129
Query: 133 FEVIEVCRAV-------NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
FEVI+ C N + RA+FSA VDARQE+
Sbjct: 130 FEVIDNCLQYMKQPSTGNKMSHVLRAKFSA-----------------------VDARQEL 166
Query: 186 DLRIGASFTRFQTMLL--KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
DL++G +FTRFQT K ++DS V+SYGPCQ PTL F VER+ IQ + E
Sbjct: 167 DLKVGVAFTRFQTRFFQGKYGNLDST------VISYGPCQTPTLSFCVERHDRIQGFQPE 220
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW+I + K+ + + +W R +FD + ++M
Sbjct: 221 SFWSIKVTVKNSDTSTNLTWNRERVFDRQVGHLFFKM----------------------- 257
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
E K +S M +AE LY G+ISYPRTET + +++ ++ +Q
Sbjct: 258 ----TEEAKGNGASLGISPSEAMSIAERLYTQGYISYPRTETSKYPETFDINSVLVQQAN 313
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
HP WG Y LL + + P SGG D HPPI PT+ + ES D +++Y+ V R
Sbjct: 314 HPHWGHYCDDLLKNG---YDRP-SGGVDVGDHPPITPTRVAL-ESDLHGDTWRVYDFVAR 368
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
+F+ +S T V I E FS G + + + V + IP + G
Sbjct: 369 NFIGSISAGLKYTTTTVNFLIGKEEFSCKGSSVTSLGFASVMHWMGRADEHIPEFKKGDV 428
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA-IKDANTR 542
++++ G T PP L+EA+L+ M+ GIGTDA++ HI + R Y + ++ +
Sbjct: 429 LHIESVSITEGKTSPPDYLTEAELIGLMEHHGIGTDASIPVHINNICQRNYVQVSGSSRK 488
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PTN+G L+ G D +E + ++ G S DVL L+ + F
Sbjct: 489 LVPTNLGIVLIHGSD--------------VEQQLNLIASGKASHKDVLDYFLKMFERKF- 533
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
K +++M FE + A G + +CG C+
Sbjct: 534 ---EYFTKSIDSMDELFE--ATFSPLAATGRPLSKCGKCK 568
>gi|336255063|ref|YP_004598170.1| DNA topoisomerase [Halopiger xanaduensis SH-6]
gi|335339052|gb|AEH38291.1| DNA topoisomerase [Halopiger xanaduensis SH-6]
Length = 826
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 195/673 (28%), Positives = 325/673 (48%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF + Y W +PA+L A V K K++I TL AR+ + + D DREGE
Sbjct: 52 VDFPDEYSDWRDVEPAELIDADVEKTAT--KENIVATLRIFARKATSVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + +RR RFS++ + E+ +A +N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVRDVNEDVPIRRVRFSSITENEVQEAFENPDDLDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N +S G Q PTL +V+R EIQA + E++W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPEDYWELFA 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
++ T + +++ +A +Y+ Q +ATV V ++ + PP
Sbjct: 222 DLAKDDTTFESQYFYRDEDDNEAERVWEEAAAEEVYDTLSQRDSATVVDVNRRTRTDAPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ + +
Sbjct: 282 TPFNTTQF-IRAAGALGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GHP G A+ LL+ P G + HPPIHPT S D ++++ELVV
Sbjct: 341 GHPTLGESAEDLLEADE---IQPTEGDEETTDHPPIHPTGEIPARGDVSDDEWEIFELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V++ AV V + +G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFYATVAEAAVWEHLKVVSEVEDYRLKANGKRLVEPGYHDVYPYFSTAENYVPDVEEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + L+ T+PP ++ L+ M+ GIGT +T H+ ++KL DR Y D
Sbjct: 458 ELALSDVELEEKQTQPPRRYGQSRLIETMEDMGIGTKSTRHNTLEKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E+DM ++ G DV + ++ F
Sbjct: 517 --PTKLAMAVVDAAENYADRVVSEEMTAQLEADMDAIASGEAGLEDVTDESREMLEEIF- 573
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
A L + + E +G R S +D++ + C C E +++++ SR G+ +GC
Sbjct: 574 -ANLAESR--EEIGDHL-RKSLKDDKR-----LGPCPECGE-DLLVRNSRHGSYFIGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C N + LP +
Sbjct: 624 YPDCENTLPLPST 636
>gi|389846116|ref|YP_006348355.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|448616266|ref|ZP_21664976.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|388243422|gb|AFK18368.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
gi|445750921|gb|EMA02358.1| DNA topoisomerase I [Haloferax mediterranei ATCC 33500]
Length = 855
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 199/691 (28%), Positives = 325/691 (47%), Gaps = 56/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L AR+ + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELISAPVEKHPT--QENIVAALRRLARKAGNVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ RE+ +A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITKREVTEAFENPDDLDFDLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D +A YE + A VT V+++ +
Sbjct: 226 KLTKDADGAAESFEAQYFYLDDDGTEAERIWDEEAAESAYETLLDVDAAEVTAVKRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DKPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S ++D + +Y
Sbjct: 345 GAFEGDRRFKEDAKSLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLTEDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V AG +G+ +L Y +VY + + +P
Sbjct: 402 ELVVRRFFATVAENAVWEHLRVVAEAAGLSLKANGKRLLEPGYHEVYPYFNSTESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGEALVLSETHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + DV + +
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLG 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C + ++V++KSR G+
Sbjct: 579 DVF-------------EGLMESREELGKQLQDSLKADKTVGTCPDCGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+GC ++P C + LP S + + + C
Sbjct: 626 FIGCDSYPDCTYTLPLP-STGKPLIMEDACE 655
>gi|119579893|gb|EAW59489.1| topoisomerase (DNA) III beta, isoform CRA_b [Homo sapiens]
Length = 516
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/454 (36%), Positives = 248/454 (54%), Gaps = 11/454 (2%)
Query: 150 RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSV 209
RARFS++ D +I A+ L +P+ A +VDARQE+DLRIG +FTRFQT + + D
Sbjct: 13 RARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDL- 71
Query: 210 TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCS-HKSEEGTATFSWMRGHL 268
D +L+ S+GPCQ PTLGF VER+ +IQ+ + E +W + + ++ + W R +
Sbjct: 72 --DSSLI-SFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRV 128
Query: 269 FDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKV 328
FD A + M E A V ++EK K P L+T+E+ + AS M +H M+
Sbjct: 129 FDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQT 188
Query: 329 AEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSG 388
AE LY G+ISYPRTET + +L G +++Q HP W +RLL A G+ N
Sbjct: 189 AERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLL--AEGI--NRPRK 244
Query: 389 GHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
GHD HPPI P K S+ E+ D ++LYE + RHF+A VS ++ + I E+
Sbjct: 245 GHDAGDHPPITPMK-SATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPEL 303
Query: 449 FSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
F+ SG+ +L+ + +V ++S +PT G F + + T PP L+EA+L
Sbjct: 304 FTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAEL 363
Query: 508 LSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPN 567
++ M+K GIGTDA++ HI + R Y ++ R PTN+G LV GY + EL P
Sbjct: 364 ITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPT 423
Query: 568 LRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+RS +E + ++ G VL + L K F
Sbjct: 424 IRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKF 457
>gi|402468347|gb|EJW03513.1| hypothetical protein EDEG_00195 [Edhazardia aedis USNM 41457]
Length = 1086
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 252/498 (50%), Gaps = 86/498 (17%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+LNVAEKPSVAK+++ +LS N + I + ++ +F + + M+ TSV GHL
Sbjct: 3 ILNVAEKPSVAKTISSLLSNN--VHITKSDCKFTPNLKFVF----KNNDMIFTSVLGHLF 56
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF Y W + +P L A +++ V ++ +I K L++ A++ L++W DCDREGE
Sbjct: 57 NNDFGSEYNDWANVNPKSLLSADIQRKVVKENINICKNLKKLAQKADLLIIWTDCDREGE 116
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI E+ ++ V L +RA FS + REI + +NL + N+ ++AV+AR E+DLRI
Sbjct: 117 NIGCEIRDIVYQVR-KLNTKRAVFSGITLREIKNSFENLKNLNELASEAVNARIELDLRI 175
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT-- 247
G++FTR QT+ +R V+SYGPCQ PTLGFVV+R E + E F+T
Sbjct: 176 GSAFTRLQTLSF----------NRGSVISYGPCQIPTLGFVVDRMLEKENFIGENFFTLN 225
Query: 248 ---------------------------------INCS----HKSEEGTAT---------- 260
I+C+ HK+E+ T
Sbjct: 226 LIITKENVPIKCIAKKKSRFSDKLVNTENLIPGISCASDTLHKNEDFLHTQLYVNKELNN 285
Query: 261 --------------FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
F W RG+LFD + +++ V V ++ K P PL
Sbjct: 286 PKNKKTHSGHQHDIFKWKRGNLFDKNFVLFMFKAISDASVCYVKSVEKKRVEKIRPLPLR 345
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+EL+K + F++SS M VAE LY G+ISYPRTETDSFS G I+ E
Sbjct: 346 TVELQKACASIFKISSHEVMNVAEKLYNNGYISYPRTETDSFSPGFKFVDIINELSKDNH 405
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ Y ++L G+ NP G ++D AH PI+P K SG S S K+YE V R FL
Sbjct: 406 FTNYCKKL---ENGMMCNPRKGKNNDMAHAPIYPLK--SG-SNLSGVERKIYEYVSRRFL 459
Query: 427 ACVSQPAVGAETIVEINI 444
C+S+ A G ET VEI I
Sbjct: 460 GCISKNATGFETKVEIII 477
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 42/218 (19%)
Query: 435 GAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY---------------- 478
E +E + E+F +G ++ KNYL+V+ ++ W I Y
Sbjct: 623 NKENTIESLLNEEIFHLTGFEVVEKNYLEVFTYDKWDEKHIFEYTPNDTLTLLRNGYITI 682
Query: 479 ---------------VH-------GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
+H G + + LT+D G T+PP L+E DL++ MDK GI
Sbjct: 683 DLKYNSLFKESTNSSIHISKSSGVGTSMLYSKLTIDEGKTKPPDYLTEPDLINLMDKNGI 742
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESD 575
GTDAT+ +HI K+ DR Y K F TN+G+ L++G+ +G ++ P LRS +E
Sbjct: 743 GTDATIAEHIHKIQDRNYC-KKKGKFFIATNLGKGLILGFRQIGLIKMTNPKLRSSLEKS 801
Query: 576 MKEVSVGNKSKADVLANCLQQMKACF--LDARLKKVKL 611
+ +SVG K DVLA L + + L++++ +V L
Sbjct: 802 LCAISVGECIKGDVLARELAIYENIYDVLNSKIDQVHL 839
>gi|221508293|gb|EEE33880.1| prokaryotic DNA topoisomerase, putative [Toxoplasma gondii VEG]
Length = 291
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 139/273 (50%), Positives = 179/273 (65%), Gaps = 4/273 (1%)
Query: 280 MCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFIS 339
MC++ P ATVT VR E+ K P PL T+EL K ASR RMSS M +AE LYQ G IS
Sbjct: 1 MCLENPEATVTDVRGTERTKQRPVPLCTVELHKMASRKLRMSSARCMSIAESLYQRGIIS 60
Query: 340 YPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIH 399
YPRTET+ FS +L +++ IG WG YAQ+L+D LW P G DDKAHPPIH
Sbjct: 61 YPRTETEVFSPTMDLLSLIRVHIGSTAWGTYAQKLVD-GDFLW--PSDGARDDKAHPPIH 117
Query: 400 PTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAK 459
P K S ++ +KLYE V RHFLAC S+ A G ET VEI+IAGE F +G +L +
Sbjct: 118 PLKLMQ-RSELEEEEWKLYEFVTRHFLACCSEDAFGFETRVEIDIAGEGFYATGLTVLER 176
Query: 460 NYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTD 519
+LDVY +E W G +P ++ ++ +P+++ + T PPPLL+EADL+ MDK GIGTD
Sbjct: 177 RWLDVYPYEQWSGNRLPRFLVNERVMPSSILMSERQTEPPPLLTEADLIDLMDKNGIGTD 236
Query: 520 ATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
ATMHDHI+ + DR Y K+ N +F PT++G AL
Sbjct: 237 ATMHDHIRTIQDRHYCYKNENMQFVPTDLGVAL 269
>gi|145527750|ref|XP_001449675.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417263|emb|CAK82278.1| unnamed protein product [Paramecium tetraurelia]
Length = 949
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 205/684 (29%), Positives = 334/684 (48%), Gaps = 50/684 (7%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
G + +L VAEK S+A++VA + +R ++GR + Y F+ +GQ + +T+
Sbjct: 27 GSNLKILMVAEKNSIAEAVAYAIGNK--VRAKKGRQAF---YYFSGMFKGQQANFTVTAT 81
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL DF + Y W+SCDP DL+ A K P +K I L + + +L+LWLD
Sbjct: 82 NGHLFSRDFPKEYENWNSCDPIDLFQAKTIKK-PANKAGIG-LLRKCSSGIDYLILWLDN 139
Query: 125 DREGENIAFEVIEV-CRAVNCHLVLR--RARFSALIDREIHQAVQNL-VDPNQWFADAVD 180
DREGENI FEV EV + +N ++R RA+FS++ ++ A L PN +++VD
Sbjct: 140 DREGENICFEVDEVKSKVINLGNLIRKLRAKFSSITQTDLKYAYNQLNTGPNILESESVD 199
Query: 181 ARQEIDLRIGASFTRFQTM-LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
ARQ IDL++G +F+RFQT+ K + +D + +++GPCQ PTLGF VER+ EI
Sbjct: 200 ARQIIDLKVGVAFSRFQTLHFQKKYSMDQM-------VTFGPCQTPTLGFCVERHEEIVN 252
Query: 240 HESEEFWTINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
F+TI S + G W+ ++ A + + + V + ++K
Sbjct: 253 FVPRAFYTIKLSILNNVGYKQEVEWLGQQIWKEPEAKQVVQQLQKFKQGDVISQQVEQKS 312
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
K P ++T+ L K AS Y + + M VAE LY G+ISYPRTET ++ I+
Sbjct: 313 KPRPEGINTVSLLKFASSYLGLGPQQAMHVAERLYLNGYISYPRTETTAYPHEFPTPKII 372
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSG---GHDDKAHPPIHPTKFSSGESRWSQDHY 415
+ D + +H+ L N S G D HPPI PT+ + + ++
Sbjct: 373 NNLQKYKD-----PLISEHSKYLKTNGHSNPKQGVDVGDHPPITPTENVPQNNLYGEEK- 426
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV- 474
+YE VV+ FLA S+ ++ + F + IL + V +W +
Sbjct: 427 TMYEYVVKMFLAAHSKDCKYENHTLKFFVGDHQFKFQSKYILDPGFTKV---ATWLAITE 483
Query: 475 ----IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLL 530
+ +V + + G T PP L+E +L++ MDK IGTDA+M HI +
Sbjct: 484 NKSDLTKFVTNNKVQIGFVEYQQGQTSPPDHLTETELITLMDKFKIGTDASMATHINNIC 543
Query: 531 DRFYA-IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV 589
+R Y ++ ++ + PT++G +LV GY + +L P LRS +ES + +++ G V
Sbjct: 544 ERQYVKVEGSSRKLKPTDLGLSLVRGYKRIDPDLVAPQLRSSIESQVDQIAKGKLKCQQV 603
Query: 590 LANCLQ--QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMV 647
+ + +Q K R+ +L++ R D++ ++ +CG C N
Sbjct: 604 IQDVIQIFTKKYIHFRERINDFQLVQYHQQGINRQIKQSDEEI---ILSRCGDC---NRY 657
Query: 648 LKKSRDGNLMVGCLA----FPQCR 667
L +S + + C+ P C+
Sbjct: 658 LVQSNNSAICKQCIKTYPLLPDCK 681
>gi|374327011|ref|YP_005085211.1| DNA topoisomerase [Pyrobaculum sp. 1860]
gi|356642280|gb|AET32959.1| DNA topoisomerase (topA) [Pyrobaculum sp. 1860]
Length = 598
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 200/622 (32%), Positives = 313/622 (50%), Gaps = 46/622 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L VAEK SVA+++A L ++ R R +Y F+Y G+ L ++GH+M
Sbjct: 2 ILIVAEKRSVAQAIAKYLGRS----YRVQRIHGVPVYSFSYG--GREAAAL--GLSGHIM 53
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+ DF R W P +L++A V + D K L A + + L LD D EGE
Sbjct: 54 DFDFAARQNVWTWLPPEELFNATPLLVVRREALDYVKALRALAAKADEVYLALDADVEGE 113
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
IA+E V R+VN +RR F+A+ REI A Q + + V R +IDL +
Sbjct: 114 AIAYEAALVVRSVNKRAPIRRVLFNAVTPREITAAFQRPTKLDLKKVEKVFTRMQIDLTL 173
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRF T+ ++ H+ +R LSYGPCQ P LG VV R + + + E+++ +
Sbjct: 174 GAAFTRFLTLAVRE-HL-----ERGRFLSYGPCQTPVLGMVVTRELQRRNFKPEKYYILK 227
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY------PPY 303
+ E GH + +S V E A K + Y PP
Sbjct: 228 ALVEVE----------GHRIEMSSDVRYKSREEGERAAASVKHGVVKTALYKPHEVEPPE 277
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL T+ELE+RASR+ ++++ T+ +AE+LY+AG+ISYPRTET + +L I+++ +
Sbjct: 278 PLETVELERRASRWLGINAKKTLDIAEELYRAGYISYPRTETTIYPQTLDLREILRD-LA 336
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES------RWSQDHYKL 417
+ GPYA+ LL + P G DD AHPPI+PTK ++ + + +
Sbjct: 337 ETEHGPYAEELLRRSF----KPTRGDSDDGAHPPIYPTKGATKAEIMKIFGKAGAQAWAI 392
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
Y+ VVRHFLA +S PA+ + + G G+ ++++ Y +Y +E +P
Sbjct: 393 YDFVVRHFLATLSPPALVEKQKIAAAFGGVEMYAEGQRVISEGYWRIYPWERQRDKPLPR 452
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G + + T PPP ++E++LL+ M K GIGTDATM DHI + R Y +K
Sbjct: 453 VSPGAPARAIKVEVVERETEPPPQMTESELLALMKKYGIGTDATMQDHIHTNVKRGY-MK 511
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
A R PT++G AL EL +P +R+ +E+ + + + ++A +
Sbjct: 512 LAKGRCVPTDLGIALATALFQHAPELIEPTVRAKIEAALNSIVRNSTPPPKLIAEVKAEF 571
Query: 598 KACF--LDARLKKVK--LLEAM 615
+ + L AR +++K LL A+
Sbjct: 572 RTYYENLKARREEIKKALLNAL 593
>gi|335438421|ref|ZP_08561165.1| DNA topoisomerase I [Halorhabdus tiamatea SARL4B]
gi|334892042|gb|EGM30286.1| DNA topoisomerase I [Halorhabdus tiamatea SARL4B]
Length = 844
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 206/689 (29%), Positives = 335/689 (48%), Gaps = 56/689 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L V EK + A+ +A ILS + R N + + + GQ + ++GH++
Sbjct: 3 LIVTEKDNAARRIAEILSGDSA-----SAERRNGVNVYRWG--GQ----RVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF Y +W +P +L A V +++I TL AR+ +V+ D DREGE
Sbjct: 52 LDFPPEYSEWRDVEPIELIDADVVTQPT--RENIVATLHSLARKADEVVIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ DRE+ +A +N + + A A +ARQ +DL G
Sbjct: 110 IGKEAYELIRE-ETDAPVERVRFSSITDREVQKAFENPDEIDFDLAAAGEARQIVDLIWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ K N +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSAKQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPEDYWEI-V 219
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCV---------QEPTATVTKVRQQEKLKYP 301
+ +++G F + D + A ++E + TATVT+VR++ + P
Sbjct: 220 ADLAKDGQG-FEAQYFYDDDGSEAERVWEESAAEAAYADLAESGTATVTEVRRRTRTDDP 278
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T AS S++ M +AE+LY G+++YPRT+ + + ++
Sbjct: 279 PAPFNTTAFISAASS-LGYSAQRAMSLAEELYTDGYLTYPRTDNTVYPEDLDPAELLGAF 337
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
G ++G A+ LL A P G ++ HPPIHPT D +++YELV
Sbjct: 338 EGSYEFGDDAESLL---AQEEIEPTRGDNESTDHPPIHPTGELPDRDEIGADAWEIYELV 394
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V++PA A V AG +G+ +L + Y VY + S G V+P G
Sbjct: 395 VRRFFATVAEPATWAHLRVVAEAAGRSLKANGKRLLEEGYHAVYPYSSAGETVVPAVEEG 454
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ + L++ T+PP ++ L+ M++ GIGT AT H+ ++KL DR Y ++D
Sbjct: 455 EELSIDDVELEAKQTQPPRRYGQSRLIQHMEQMGIGTKATRHNIVEKLYDRGY-VEDDPP 513
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PT + EA+V ++ + + + +E+DM ++ G + +V A + + F
Sbjct: 514 R--PTKLAEAVVTAAEEYADHVVSEEMTAQLEADMTAIAEGEATLEEVTAESREMLGEIF 571
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMVG 659
+ R + E +G F Q + + R G C E ++++++SR G+ VG
Sbjct: 572 EELRESR----EEIGEFL---------QKSLKADRTLGPCPECGEDLLIRRSRQGSYFVG 618
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
C FP+CR + LP S E V +TC
Sbjct: 619 CDGFPECRFTLPLP-STGEPQVMDDTCED 646
>gi|170285121|gb|AAI61096.1| LOC100145467 protein [Xenopus (Silurana) tropicalis]
Length = 482
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 170/472 (36%), Positives = 253/472 (53%), Gaps = 33/472 (6%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ R+G + ++E+ S GQ MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGSA-SSRKGLNGACSVHEYTGSFMGQTVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y W DPA+L+ AP K K + K L+ E R C ++VLWLDCD+E
Sbjct: 62 MSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEGRGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ RA + RA+FS++ D +I A+ L +PN+ A +VDAR
Sbjct: 122 GENICFEVLDAIHPVMNRAHGGERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
FQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 -------------FQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 224
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + +E W R +FD A + + A V V ++EK K
Sbjct: 225 ETYWVLQVKVSRGQENPLILDWDRVRVFDREIAQMFINITKTAKEAQVESVSKKEKAKQR 284
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 285 PQALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLRQQ 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+P W + LL A G+ N G D HPPI P + S+ E+ D ++LYE +
Sbjct: 345 ANNPFWADMVKTLL--AEGI--NRPRKGTDAGDHPPITPMR-SATEAELGGDAWRLYEYI 399
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL 473
RHF+A +S +T + ++ E F+T+ + +++ + ++ W G+
Sbjct: 400 TRHFIATISHDCKYLQTSIAFSVGPEKFTTTCKEVISPGFTEIM---PWQGI 448
>gi|399575540|ref|ZP_10769298.1| DNA topoisomerase i [Halogranum salarium B-1]
gi|399239808|gb|EJN60734.1| DNA topoisomerase i [Halogranum salarium B-1]
Length = 843
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 199/697 (28%), Positives = 320/697 (45%), Gaps = 63/697 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIAAILSGESA-----EAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L AP+ KH +++I L AR+ +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPIDKHPT--QENIVAALRRLARKAGNVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ RE+ A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVNIDRVRFSSITKREVTDAFENPDDLDFDLAAAGEARQVIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + N +S G Q PTL +V+R EI A + E++W +
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIDAFDPEDYWELFA 225
Query: 251 S-HKSEEGTATFSWMRGHLF------------------DYTSAVIIYEMCVQEPTATVTK 291
KS E + F D SA +E E +ATVT
Sbjct: 226 DLEKSAESATDADEVDDESFESQYFYLDEDDNEAERVWDEESATKAFETLQSESSATVTS 285
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSG 351
V ++ + PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ +
Sbjct: 286 VNRRTRTDEPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTHYPED 344
Query: 352 TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWS 411
+ ++ G + A+ LLD P +G + HPPIHPT S S
Sbjct: 345 LDPRELLDAFTGSSTFSDDAESLLDQEE---IEPTTGDKETTDHPPIHPTGELPSASDLS 401
Query: 412 QDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG 471
+D + +YELVVR F A V++ A V ++AG +G+ ++ + Y VY + +
Sbjct: 402 EDEHDVYELVVRRFFATVAEAAKWEHLRVVADVAGLSLKANGKRLIKEGYHAVYPYFNNT 461
Query: 472 GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
+P G++ T +++ T+PP ++ L+ M++ GIGT AT HD I+KL D
Sbjct: 462 ESFVPDVEEGEELAVTDTRIEAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYD 521
Query: 532 RFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
R Y D PT + A+V +D + + + +E DM ++ G + DV
Sbjct: 522 RGYIESDPPK---PTRLARAVVKAGEDFADLIVSEEMTAQLEEDMLAIADGKANYEDVTN 578
Query: 592 NCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLK 649
+ ++ F G+ G + + + + G C E +++++
Sbjct: 579 ESREMLEQVF-------------EGLMENSEELGSQLKKSLKADKTLGPCPECGEDLLVR 625
Query: 650 KSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
KSR G+ VGC +P C + LP S + + +TC
Sbjct: 626 KSRHGSYFVGCDGYPDCTYTLPLP-STGKPLILDDTC 661
>gi|448301636|ref|ZP_21491627.1| DNA topoisomerase I [Natronorubrum tibetense GA33]
gi|445583552|gb|ELY37882.1| DNA topoisomerase I [Natronorubrum tibetense GA33]
Length = 847
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 193/677 (28%), Positives = 328/677 (48%), Gaps = 50/677 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R + +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSREKGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL +R+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILSRKATRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRDVDEEVPIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N +S G Q PTL +V+R EI+A + E +W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIEAFDPETYWELFA 221
Query: 251 SHKSEEG-TATFS---WMRGH-------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+ EG T F + R +++ T+A +YE + +ATV V ++ +
Sbjct: 222 DLRKREGETEPFDAQYFYRDEDGNEAERVWEETAASEVYETLAERDSATVVDVNRRTRTD 281
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 282 TPPTPFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLD 340
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFSSGESRWSQDHYKLY 418
+ +GHP G A+ LL+ + P G + HPPIHPT + S S D +++Y
Sbjct: 341 DFVGHPTLGDSAESLLESDDEIV--PTEGDEETTDHPPIHPTGEIPSRGGDVSDDEWEVY 398
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ A+ V + ++G+ ++ Y DVY + + +P
Sbjct: 399 ELVVRRFYATVAEAAIWEHLKVVTEVDDYRLKSNGKRLVEAGYHDVYPYFNSTENFVPGV 458
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G++ + + L+ T+PP ++ L+ M+ GIGT +T HD ++KL DR Y D
Sbjct: 459 DEGEELDLSEVELEEKETQPPRRYGQSRLIETMEDLGIGTKSTRHDILEKLYDRGYVESD 518
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + + +E+DM ++ G + DV + ++
Sbjct: 519 PPR---PTRLAMAVVGAAEDHADRVVSEEMTAQLEADMDAIASGEATLDDVTDESREMLE 575
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMV 658
F + + ++ + + R S +D++ C C E ++++++SR G+ V
Sbjct: 576 EIFANLAESREEIGDQL-----RKSLKDDKRLG-----PCPECGE-DLLVRRSRHGSYFV 624
Query: 659 GCLAFPQCRNAVWLPGS 675
GC +P C N + LP +
Sbjct: 625 GCDGYPDCENTLPLPST 641
>gi|448397774|ref|ZP_21569807.1| DNA topoisomerase I [Haloterrigena limicola JCM 13563]
gi|445672873|gb|ELZ25444.1| DNA topoisomerase I [Haloterrigena limicola JCM 13563]
Length = 826
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 193/685 (28%), Positives = 327/685 (47%), Gaps = 48/685 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL ARR + + + D DREGE
Sbjct: 52 VDFPPEYSDWRDVEPVELIDASVEKTPT--KENIVATLRLLARRAERVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ QA D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRGVDEDVPIRRVRFSSITENEVQQAFDEPDDLDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EI+A + E++W +
Sbjct: 170 AALTRFLSLSAGQLGED--------FISVGRVQSPTLKLIVDREREIEAFDPEDYWELFA 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ +E + ++D ++A +YE + ATV V ++ + PP
Sbjct: 222 DLQKDETRFEAQYFYRDEDDNEAERVWDESTADEVYETLAERDAATVVDVTRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ + +
Sbjct: 282 TPFNTTQF-IRAASSLGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GH G A+ LL+ P G + HPPIHPT S D ++++ELVV
Sbjct: 341 GHSTLGESAESLLEADE---ITPTEGDEETTDHPPIHPTGEIPARGDISDDEWEIFELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V + +G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFFATVANAAVWEHLKVVAEVDDYRLKANGKRLVEPGYHDVYPYFSTSENYVPDVDEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + L++ T+PP ++ L+ M++ GIGT +T HD ++KL DR Y D
Sbjct: 458 ELSLSDVELEAKETQPPRRYGQSRLIETMEELGIGTKSTRHDILEKLYDRGYVEGDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V +D + + + +E+DM ++ G + DV + ++ F
Sbjct: 517 --PTRLAMAVVEAAEDYADRVVSEEMTAQLEADMDAIASGEATLDDVTDESREMLEEIFA 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ + C C E ++++++SR G+ VGC
Sbjct: 575 NLAESREEIGDQL-----RKSLKDDKR-----LGPCPECGE-DLLVRRSRHGSYFVGCDG 623
Query: 663 FPQCRNAVWLPGSVSEAAVTTNTCN 687
+P C + LP S + + TC+
Sbjct: 624 YPDCEFTLPLP-STGKPLIMEETCD 647
>gi|357462899|ref|XP_003601731.1| DNA topoisomerase [Medicago truncatula]
gi|355490779|gb|AES71982.1| DNA topoisomerase [Medicago truncatula]
Length = 1024
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/524 (32%), Positives = 270/524 (51%), Gaps = 41/524 (7%)
Query: 150 RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFH---- 205
RARFS++ ++++ A+ NLV PN+ A AVDARQEIDL++G +FTRFQT + +
Sbjct: 266 RARFSSVTEKDVLNALDNLVRPNRDEAMAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLD 325
Query: 206 -------------------IDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
I+ + D + SYGPCQ PTLGF V+RY +I + E+FW
Sbjct: 326 ARVISLVFCSLLSSGGPLVINQLLDWICIANSYGPCQTPTLGFCVQRYLQINTFKPEKFW 385
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
++ W R LFD A++ ++ + VT + ++ + K P L+
Sbjct: 386 SLQPYIIQSGYEILLEWQRSKLFDINVAMMFQKLVADDGIVEVTNISEKPETKGRPVGLN 445
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T+ L K AS + M++AE LY GFISYPRTE+ ++ + + Q +P
Sbjct: 446 TVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFRSALSAQRNNPT 505
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
WG Y + LL A+G ++ P SG D HPPI P K S+ E D +KLY+ + ++F+
Sbjct: 506 WGNYVEGLL--ASG-YQKPRSGT-DVGDHPPITPMK-SASEDMLGNDAWKLYQYICQYFI 560
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
VS VE + GE F +G+ ++ K + + + + +P++ GQ+
Sbjct: 561 GTVSPDCKYIRKKVEFQVGGESFHCTGQHVITKGFTAIMPWLAINDKSLPSFEEGQKIKL 620
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ + L G T PP L+E++L+S M+K GIGTDA++ HI + +R Y A + +PT
Sbjct: 621 SKVELYEGSTTPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLSPT 680
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+G LV GY + +L P++RS +E + ++ G V+ + ++Q K F +
Sbjct: 681 TLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKGQVDHHRVVQHVIEQFKQKFC-YFV 739
Query: 607 KKVKLL--------EAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
KKV L EAM FE ++S D +G ++ +CG C
Sbjct: 740 KKVGYLLFSACFWIEAMDALFEAQFSALVD---SGRIMSKCGKC 780
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A S+A +LS + + R G + +++EF+ R P +TSV GH+
Sbjct: 6 VLMVAEKPSIALSIATVLSHGK-MNTRRGST---EVHEFDGKFRKAPARFKVTSVIGHVF 61
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF +Y+ W + DP DL+ A V K+ K I K L +EAR C++LVLWLDCDREGE
Sbjct: 62 SVDFPGKYQDWAATDPLDLFQAQVIKNESNPKAHICKHLHQEARGCRYLVLWLDCDREGE 121
Query: 130 NIAFEVIEVCRAVN 143
NI FE E +N
Sbjct: 122 NICFEGGECLLFIN 135
>gi|397627399|gb|EJK68461.1| hypothetical protein THAOC_10357, partial [Thalassiosira oceanica]
Length = 1051
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 210/677 (31%), Positives = 314/677 (46%), Gaps = 103/677 (15%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNY-------SIRGQ--PCH 58
+ VL VAEKPS+AKS+A LS N+G R R+G SR +YEFN ++ G+ PC
Sbjct: 291 VRVLMVAEKPSIAKSIADALSGNRGPRQRKGISRALPVYEFNTHNFLPANNVTGEKTPCL 350
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHV--PEDKKDIKKTLEEEARRCQ 116
+ +TSV GH+ L FD++ + S DP + + PV K K + L+ A
Sbjct: 351 VRVTSVVGHIYSLGFDQQGQDKKS-DPREYFTMPVTKQEEGTSSKLRVVDHLKALAGDSN 409
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAV---------NCHLVLRRARFSALIDREIHQAVQN 167
L LWLDCD EGENIAFEV+ V R + + RA+FSA+ + I A
Sbjct: 410 HLCLWLDCDAEGENIAFEVLAVTRRAILTNNPSSDDGVRRIHRAKFSAITPKAIQDAFVT 469
Query: 168 LVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTL 227
+ +P+ + +VDARQE+DLRIG + TR T + H+ + ++SYGPCQ P L
Sbjct: 470 MEEPDAALSRSVDARQELDLRIGVAMTRLLTW--RCIHLARRANPATRMISYGPCQTPAL 527
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEG-TATFSWMRGHLFDYTSAVI---------- 276
F ++R EI+ + +W ++CS K +G T + W+ L D V+
Sbjct: 528 SFCIDRMREIEGFTPQVYWKLSCSAKMVDGSTQSLKWL--GLVDEADTVLDTRNKNSQGE 585
Query: 277 ----IYEMCVQE-------PTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHT 325
E +E VTKV + ++ PP L+T+ L + S+ MS +
Sbjct: 586 DSATFNEKAAREVINLAKHSNLVVTKVTRSDESISPPLGLNTVALLEVGSKAMGMSPKGL 645
Query: 326 MKVAEDLYQAGFISYPRTETDSFSS-GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
MKVAE LY +GFISYPRTET + G + ++++ HPDWG A L+
Sbjct: 646 MKVAETLYSSGFISYPRTETTRYDPIGFDAKSLLRQHSSHPDWGKSASYLVRTRKS--NR 703
Query: 385 PGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINI 444
P S G D HPPI P K ++ +++YE V R+F+ + T + +
Sbjct: 704 PPSRGFDAGDHPPITPLKSATRNQIGGGAAWRVYEFVTRNFIGSLHNDLKFTRTKISLAF 763
Query: 445 AGEV---------------FSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
G F+ + R +L D+ G I G ++
Sbjct: 764 EGSRAPDFEFELVSVDSLGFADACRWVLK----DIQAGNKDAGRDIQV---GDVLPIASI 816
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT-------- 541
++D TRPP L E +L+ MD IGTDA+M H+ ++DR Y + T
Sbjct: 817 SIDQKNTRPPKFLQEHELIRQMDDKRIGTDASMALHVSNIVDRGYVMLTDETGTPLRPPR 876
Query: 542 --------------RF-APTNIGEAL--VMGYDDMGYE------LWKPNLRSMMESDMKE 578
RF PT +G +L + G+ + E L P++R ME ++K
Sbjct: 877 PPGKRKQNQPRQIGRFMVPTPLGSSLLELFGHQEEAREVESPALLSHPSIRRQMEEEVKL 936
Query: 579 VSVGNKSKADVLANCLQ 595
++ G SK ++ L+
Sbjct: 937 IAEGKMSKVHLVKRSLK 953
>gi|448419687|ref|ZP_21580531.1| DNA topoisomerase I [Halosarcina pallida JCM 14848]
gi|445674601|gb|ELZ27138.1| DNA topoisomerase I [Halosarcina pallida JCM 14848]
Length = 835
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 190/675 (28%), Positives = 323/675 (47%), Gaps = 51/675 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESA-----EAERVNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L AP+ KH +++I L +R + +V+ D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIDAPIDKHPT--QENIVAALRRLSRNARRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ RE+ +A +N + + A A +ARQ +DL G
Sbjct: 114 IGKEAYELVREVNEEVPVDRVRFSSITQREVTEAFENPDELDFNLAAAGEARQIVDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ + D +S G Q PTL +V+R EI A + E++W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIDAFDPEDYWELFA 225
Query: 249 NCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ SE A + ++ ++D A YE TATVT VR++ + PP
Sbjct: 226 DLEKGSESFEAQYFYLDEDDNEAERVWDGDDAEAAYETLRGAETATVTSVRRRTRTDDPP 285
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+++YPRT+ + + ++
Sbjct: 286 APFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYMTYPRTDNTVYPEDLDPRELLDAFT 344
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+ + A+ LLD P +G ++ HPPIHPT + ++D +++YELVV
Sbjct: 345 ANRTFAEDAESLLDQEE---IEPTAGDNETTDHPPIHPTGELPSRADLTEDEWEVYELVV 401
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V++ A V + AG +G+ ++ + Y VY + + +P G+
Sbjct: 402 RRFFATVAESAEWEHLRVVADAAGLSLKANGKRLVKEGYHAVYPYFNSSESFVPDVEEGE 461
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ T +++ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 ELAVTDTEMEAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRNYIESDPPR- 520
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E DM+ ++ G + DV + ++ F
Sbjct: 521 --PTRLARAVVEASEEFAELIVSEEMTAQLEEDMQAITRGETTLDDVTEESREILEGVF- 577
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQES--NMVLKKSRDGNLMVGC 660
G+ G+ Q + + + G C ES ++V++KSR G+ +GC
Sbjct: 578 ------------EGLMESGDEVGKHLQKSLKADKTVGQCPESDHDLVIRKSRHGSYFIGC 625
Query: 661 LAFPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 626 DGYPDCTYTLPLPST 640
>gi|159119151|ref|XP_001709794.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
gi|157437911|gb|EDO82120.1| DNA topoisomerase III [Giardia lamblia ATCC 50803]
Length = 973
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 199/635 (31%), Positives = 303/635 (47%), Gaps = 78/635 (12%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKI----YEFNYSIRGQPCHMLMTSVT 65
+L +AEKPS+A+ ++S+N G EG + + + Y F S G + TSV
Sbjct: 2 ILLIAEKPSIAE----MISRNYG----EGAKKLDNVSFPTYTFVQSFEGSKETFMCTSVA 53
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ E+DFD V + + K L+ + L+L LD D
Sbjct: 54 GHVFEIDFDAELNGSSVPQERLFERGHVHYSFTDSGSTVAKHLKSIGGKAMQLILCLDND 113
Query: 126 REGENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
REGENI FEV++V + + +RRARFSA+ EI A +NL P+Q +DAV+ARQE
Sbjct: 114 REGENICFEVLKVLKPTLRSDCRVRRARFSAVTKAEIQNAFRNLDKPDQNLSDAVEARQE 173
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+DL+IG +FTRFQT L D ++ V+SYGPCQ PTL F V R+ EIQ ++
Sbjct: 174 LDLKIGVAFTRFQTAHLHA----QFADLQSSVISYGPCQTPTLSFCVSRHDEIQRFRPKQ 229
Query: 245 FWTINCSHKSEEGTATFSWM-------------RGHLFDYTSAVIIYEMCVQEPTATVTK 291
++++ + + W R LF ++ + + + +T+ +
Sbjct: 230 IFSLDVCALIGDQPHSLRWQGVPSESREVIEEKRTGLFGKSATKCLKVLSFKSSKSTLPR 289
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSG 351
P P++T+ L K AS +S M +AE LY AG+ISYPRTE+ ++ SG
Sbjct: 290 ----------PLPMNTVALLKAASTVLGLSPNSAMALAERLYIAGYISYPRTESTTYPSG 339
Query: 352 TNLHGIV--QEQIGHPDWGPYAQRLLDHA------AGLWRNPGSGGHDDKAHPPIHPTKF 403
NL IV ++ AQ LL + + + NP G D HPPI PT
Sbjct: 340 YNLREIVLALKESSSTRISQCAQNLLPSSKKSSDESVRYTNPRRGT-DQGDHPPIMPTGL 398
Query: 404 SSGESRWSQDHYKLYELVVRHFLACVSQPAV---GAETIVEINIAGEVFSTSGRVILAKN 460
+ S + LY L+ +HFLA VS AV + T+ +++ E F S ++ +
Sbjct: 399 IPHD--VSSNELSLYNLITKHFLATVSPDAVYSHSSLTLQSVDMPSETFLLSITDVVDQG 456
Query: 461 YLDVYRFESWGGL--------------------VIPTYVHGQQFIPTTLTLDSGVTRPPP 500
+ +Y + + + G + + +G+T+PP
Sbjct: 457 WKALYSATEFSSMRDNDLSDDLADESISLSKETLQAISATGATLTIASAAIKAGMTKPPG 516
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR---FAPTNIGEALVMGYD 557
LSE+DLL M+K GIGTDA+M HI ++ R Y R PT++G +L+ GY
Sbjct: 517 YLSESDLLGLMEKHGIGTDASMATHIGNIVTRAYVELRVTGRRRCLVPTSMGISLIHGYQ 576
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
+ +L P LR+ +E D+ ++ G K + DVL N
Sbjct: 577 LIDGDLSSPQLRASIERDVTRIAEG-KIRKDVLVN 610
>gi|448582254|ref|ZP_21645758.1| DNA topoisomerase I [Haloferax gibbonsii ATCC 33959]
gi|445731902|gb|ELZ83485.1| DNA topoisomerase I [Haloferax gibbonsii ATCC 33959]
Length = 840
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 200/691 (28%), Positives = 325/691 (47%), Gaps = 56/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L ARR + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGTVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ RE+ +A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITKREVTEAFENPDDLDFNLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D SA Y+ + +A V V ++ +
Sbjct: 226 KLTKDADGDAESFEAQYFYLDDDGTEAERIWDEESAESAYQTLLGVESAEVASVNRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DTPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S ++D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLTEDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V + G +G+ +L Y DVY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAEVEGLSLKANGKRLLEAGYHDVYPYFNSTESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGESLVLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + DV + ++
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLQ 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C E ++V++KSR G+
Sbjct: 579 DVF-------------EGLMESREELGKQLQDSLKADKTVGTCPECGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+GC ++P C + LP S + + +C
Sbjct: 626 FIGCDSYPDCTYTLPLP-STGKPLIMEESCE 655
>gi|448543354|ref|ZP_21624919.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-646]
gi|448550308|ref|ZP_21628759.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-645]
gi|448559491|ref|ZP_21633565.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-644]
gi|445706491|gb|ELZ58369.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-646]
gi|445710881|gb|ELZ62676.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-644]
gi|445711751|gb|ELZ63540.1| DNA topoisomerase I [Haloferax sp. ATCC BAA-645]
Length = 840
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 201/691 (29%), Positives = 324/691 (46%), Gaps = 56/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L ARR + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGNVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ +RE+ +A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIDAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D SA Y+ + TA V+ V ++ +
Sbjct: 226 KLTKDADGDAESFEAQYFYLDDDGTEAERIWDEESAEEAYQTLLGVETAEVSSVNRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DTPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S S D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLSDDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V + G +G+ +L Y DVY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAGVEGLSLKANGKRLLEAGYHDVYPYFNSSESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGESLVLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + DV + +
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLG 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C + ++V++KSR G+
Sbjct: 579 EVF-------------EGLMESREELGKQLQDSLKADKTVGTCPDCGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+GC ++P C + LP S + + +C
Sbjct: 626 FIGCDSYPDCTYTLPLP-STGKPLIMEESCE 655
>gi|313127266|ref|YP_004037536.1| DNA topoisomerase i [Halogeometricum borinquense DSM 11551]
gi|448288260|ref|ZP_21479461.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
gi|312293631|gb|ADQ68091.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
gi|445570299|gb|ELY24865.1| DNA topoisomerase I [Halogeometricum borinquense DSM 11551]
Length = 850
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 197/687 (28%), Positives = 325/687 (47%), Gaps = 52/687 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESA-----EADRINGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L AP+ KH +++I L AR + +V+ D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIDAPIDKHPT--QENIVAALRRLARNARRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ DRE+ +A N + A A +ARQ +DL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITDREVTEAFDNPDGLDFNLAAAGEARQIVDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ + D +S G Q PTL +V+R EI+A + E++W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIEAFDPEDYWELFA 225
Query: 249 NCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ SE A + ++ ++D A YE ATV VR++ + PP
Sbjct: 226 DLQKDSESFEAQYFYLDEDGNEAERVWDGDDAEEAYETLRNVEAATVDSVRRRTRTDDPP 285
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 APFNTTQF-IRAAGSLGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPEDLDPRELLDAFT 344
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+ +G AQ LL+ P +G ++ HPPIHPT S ++D + +YELVV
Sbjct: 345 ANRTFGDDAQNLLEQEE---IEPTAGDNETTDHPPIHPTGELPSRSDLTEDEWDVYELVV 401
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V++ A V + G +G+ ++ Y +VY + + +P G+
Sbjct: 402 RRFFATVAESAKWEHLRVVADAGGLSLKANGKRLVKAGYHEVYPYFNSSESFVPDVAEGE 461
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
T ++ T+PP ++ L+ M+K GIGT AT HD I+KL DR Y D
Sbjct: 462 SLAVTDTEIEEKQTQPPRRYGQSRLIETMEKMGIGTKATRHDVIQKLYDRNYIESDPPR- 520
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E+DM+ ++ G+ S DV A + ++ F
Sbjct: 521 --PTRLARAVVEASEEFAELIVSEEMTAQLEADMQAIARGDASLDDVTAESREILEDVF- 577
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQES--NMVLKKSRDGNLMVGC 660
G+ G+ Q + + + G C ES ++V++KSR G+ +GC
Sbjct: 578 ------------EGLMESGDEVGKHLQKSLKADKTVGACPESDHDLVVRKSRRGSYFIGC 625
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+P C + LP S + + C+
Sbjct: 626 DGYPDCTYTLPLP-STGKPLIMDEECD 651
>gi|257389049|ref|YP_003178822.1| DNA topoisomerase I [Halomicrobium mukohataei DSM 12286]
gi|257171356|gb|ACV49115.1| DNA topoisomerase I [Halomicrobium mukohataei DSM 12286]
Length = 863
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 217/761 (28%), Positives = 349/761 (45%), Gaps = 66/761 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS RE N + + + + C L +GH++
Sbjct: 3 LIITEKENAARRIAEILSDGAATAERE-----NGVNVYRWGTKR--CMGL----SGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +PA+L A V K +++I TL + ARR + D DREGE
Sbjct: 52 VDFPPEYSDWRDVEPAELVAADVVKSAT--QENIVATLRKLARRADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + + R RFS++ DRE+ +A N + + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDVPVDRVRFSSITDREVREAFANPDEIDFDLAAAGEARQVIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWEIFG 220
Query: 251 SHKSEEGTATFSWMRG-------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+ ++ + ++D +A +YE ATVT VR++ + PP
Sbjct: 221 DLQGDDAAFEAQYFYDDDGSEAERVWDEATAESVYEDLAALDAATVTSVRERTRTDAPPE 280
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T A+ S++ M +AE+LY AG+++YPRT+ + ++ E +G
Sbjct: 281 PFNTTAF-ISAAGSLGYSAQRAMSLAEELYTAGYMTYPRTDNTVYPEDLEPDELLDEFVG 339
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+G A+ LL+ + P G + HPPIHPT D +++YELVVR
Sbjct: 340 SSTFGEDAESLLEQDEIV---PTEGDEETTDHPPIHPTGELPPRGELDDDEWEIYELVVR 396
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F A V++PA A V AG +G+ +L Y VY + S V+P G
Sbjct: 397 RFFATVAEPAKWAHLRVVAEAAGHSLKANGKRLLEPGYHAVYPYSSASENVVPAVSEGDA 456
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ ++LD+ T+PP ++ L+ M+ G+GT +T H+ I+KL DR Y D
Sbjct: 457 LTMSDVSLDAKQTQPPRRYGQSRLIKKMEDFGLGTKSTRHNTIEKLYDRGYIEGDPPR-- 514
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + EA+V ++ + + + ME+DM ++ G + +V A + + F +
Sbjct: 515 -PTTLAEAVVEAAEEFADRIVSEEMTAQMEADMSAIASGEATLDEVTAESREMLDRVFEE 573
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAF 663
+ E +G + ++ A + + C C E ++++++SR G+ VGC F
Sbjct: 574 LADSR----EEVGDYL------QESLKADKTLGPCPECGE-DLLVRRSRQGSYFVGCDGF 622
Query: 664 PQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGC----IG 719
P+CR + LP S E V ++C V ++ G + GC
Sbjct: 623 PECRFTLPLP-STGEPQVLDDSCEDHGLNHVKMLA----------GRDTFVHGCPRCEAE 671
Query: 720 GCDETLRQLIEI---CGTGSRIPARGRGPTASSNNGQQSNH 757
DET ++I CG G+ P RG S S+H
Sbjct: 672 KADETDDEVIGACPECGEGA-APEEQRGEGGDSEAQSASDH 711
>gi|448310602|ref|ZP_21500418.1| DNA topoisomerase I [Natronolimnobius innermongolicus JCM 12255]
gi|445607749|gb|ELY61625.1| DNA topoisomerase I [Natronolimnobius innermongolicus JCM 12255]
Length = 827
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 200/689 (29%), Positives = 330/689 (47%), Gaps = 55/689 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS SR N + + + G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILSGGT-----HDSSRENGVNVYEWG--GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL AR+ + + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDAEVEKTAT--KENIVATLRILARKAERVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + +RR RFS++ + E+ A D + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVRDVNEDVPIRRVRFSSITENEVQSAFDEPEDLDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N +S G Q PTL +V+R EIQA + E +W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPETYWELFA 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+E T + +++ +A +YE ATV V ++ + PP
Sbjct: 222 DLTKDETTFEAQYFYRDEDDNEAERVWEEAAATEVYETLDDSDAATVVDVNRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ +S +L ++ + +
Sbjct: 282 TPFNTTQF-IRAAGAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYSDDLDLEELLDDFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFSSGESRWSQDHYKLYELV 421
GHP G A+ LL+ + G + HPPIHPT + S S D +++YELV
Sbjct: 341 GHPTLGESAESLLEADEIV---ATEGDEETTDHPPIHPTGEIPSRGGDVSDDEWEVYELV 397
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V++ AV V + ++G+ ++ Y DVY + + +P G
Sbjct: 398 VRRFYATVAEAAVWEHLKVVTEVDDSRLKSNGKRLVEAGYHDVYPYFNTSENYVPDVDEG 457
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ T + L+ T+PP ++ L+ M+ G+GT +T H+ ++KL DR Y D
Sbjct: 458 EELALTDVELEEKETQPPRRYGQSRLIETMEDQGLGTKSTRHNTLEKLYDRGYIESDPPR 517
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANC---LQQMK 598
PT + A+V ++ + + + +E+DM ++ G S DV L+++
Sbjct: 518 ---PTKLAMAVVDAAENYADRVVSEEMTAQLEADMDAIASGEASLEDVTDESREMLEEIF 574
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMV 658
A D+R E +G R S +D++ + C C E ++++++SR G+ V
Sbjct: 575 ASLADSR-------EEIGDHL-RKSLKDDKR-----LGPCPECGE-DLLVRRSRHGSYFV 620
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
GC +P C N + LP S + + + C+
Sbjct: 621 GCDGYPDCENTLPLP-STGKPLILDDECD 648
>gi|397775425|ref|YP_006542971.1| DNA topoisomerase [Natrinema sp. J7-2]
gi|397684518|gb|AFO58895.1| DNA topoisomerase [Natrinema sp. J7-2]
Length = 826
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 197/673 (29%), Positives = 319/673 (47%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L +A V K K++I TL ARR Q + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELINADVEKTAT--KENIVATLRLLARRAQRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRNVDDDVPIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TR+ ++ D +S G Q PTL +V+R EIQA E EE+W +
Sbjct: 170 AALTRYLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIQAFEPEEYWELFA 221
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVI--------IYEMCVQEPTATVTKVRQQEKLKYPP 302
+ +E + D + I +YE ATV V ++ + PP
Sbjct: 222 DLRKDETNFEAQYFYRDEDDNEAERIWEEPVADEVYETLADGDVATVVDVTRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ E +
Sbjct: 282 EPFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEDLLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP G A+ LL+ +P G + HPPIHPT S D +++YELVV
Sbjct: 341 SHPSLGDSAESLLEADE---ISPTEGDEETTDHPPIHPTGEIPSRGDISDDEWEVYELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V A +G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFYATVADAAVWEHLKVVAEAADHRLKANGKRLVEPGYHDVYPYFSTTENYVPDVDEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + L+ T+PP ++ L+ M+ GIGT +T H+ ++KL DR Y D
Sbjct: 458 ELALSDIELEDKQTQPPRRYGQSRLIETMEDMGIGTKSTRHNTLEKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E+DM ++ G + DV + + ++ F
Sbjct: 517 --PTKLAMAVVDAAENYADRIVSEEMTAQLEADMDAIASGEATLDDVTDDSREMLEEIF- 573
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
A L + E +G R S +D++ + C C E ++++++SR G+ +GC
Sbjct: 574 -ANLADSR--EEIGDHL-RKSLKDDKR-----LGPCPECGE-DLLVRRSRHGSYFIGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C N + LP +
Sbjct: 624 YPDCENTLPLPST 636
>gi|448561113|ref|ZP_21634465.1| DNA topoisomerase I [Haloferax prahovense DSM 18310]
gi|445721345|gb|ELZ73013.1| DNA topoisomerase I [Haloferax prahovense DSM 18310]
Length = 840
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 199/691 (28%), Positives = 324/691 (46%), Gaps = 56/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L ARR + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGTVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ RE+ +A N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITKREVTEAFDNPDDLDFNLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D SA Y+ + A V V ++ +
Sbjct: 226 KLTKDADGDAESFEAQYFYLDDDGTEAERIWDEESAESAYQTLLGVEAAEVASVNRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DTPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S ++D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLTEDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V + G +G+ +L Y DVY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAEVEGLSLKANGKRLLEAGYHDVYPYFNSSESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGESLVLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + DV + ++
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLQ 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C + ++V++KSR G+
Sbjct: 579 DVF-------------EGLMESREELGKQLQDSLKADKTVGTCPDCGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+GC ++P C + LP S + + ++C
Sbjct: 626 FIGCDSYPDCTYTLPLP-STGKPLIMEDSCE 655
>gi|18313747|ref|NP_560414.1| DNA topoisomerase (topA) [Pyrobaculum aerophilum str. IM2]
gi|18161303|gb|AAL64596.1| DNA topoisomerase (topA) [Pyrobaculum aerophilum str. IM2]
Length = 602
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 196/625 (31%), Positives = 310/625 (49%), Gaps = 58/625 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK SVA+S+A L ++ + G S +Y FNY + ++GH+M+
Sbjct: 3 LIVAEKRSVAQSIAKFLGRSYKSQKLYGVS----VYRFNYG----GGEAVAIGLSGHIMD 54
Query: 71 LDFDERYRKWHSCDPADLYHA-PVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF R W P +L++A P+ E K +K L+ A + + L LD D EGE
Sbjct: 55 FDFAARQNVWTWLPPEELFNATPILVLRGETLKYVK-ALKSLATKADEVYLALDADVEGE 113
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
IA+E V + VN L R RF+A+ +EI A Q + + V R ++DL +
Sbjct: 114 AIAYETALVVKMVNPRARLYRVRFNAVTYKEIVSAFQKPTYIDLKKVEKVFTRMQVDLTL 173
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA FTRF T+ ++N + ++ LSYGPCQ P LG VV R + + + E+++ I
Sbjct: 174 GAVFTRFLTLTVRN------SLNKGQFLSYGPCQTPVLGIVVTRELQRRNFKPEKYYVIK 227
Query: 250 C-----SHKSEEGTATFSWMRGHLFDYTSAVI---IYEMCVQEPTATVTKVRQQEKLKYP 301
S K E +G + +A I + ++ V +P P
Sbjct: 228 AVVEIGSSKVEMSADAKFKTKGEA-EAIAATIKRGVVKIAVYKPHYV-----------EP 275
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P PL T+ELE+RASR+ ++S+ T+ +AE+LY+AG+ISYPRTET + +L +++E
Sbjct: 276 PEPLETVELERRASRWLGINSKKTLDIAEELYRAGYISYPRTETTIYPPTLDLKEVLEE- 334
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-----------GESRW 410
+ + GPYA LL P G DD AHPPI+PTK ++ G W
Sbjct: 335 LTAGEHGPYALELLRKGF----KPTRGDSDDGAHPPIYPTKGATRAEIFKVFGKAGGHAW 390
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW 470
+ +Y+LVVRHFLA +S PA+ + + ++ S G+ + + Y +Y +E
Sbjct: 391 A-----VYDLVVRHFLATLSPPALVEKQKIVVSFGKIELSAEGQRTIDEGYWRIYPWERQ 445
Query: 471 GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLL 530
+P G+ + + T PPP ++E++LL+ M K GIGTDATM DHI +
Sbjct: 446 PEKPLPRVAPGEPARAVEIRVVERETEPPPQMTESELLALMKKYGIGTDATMQDHIYTNI 505
Query: 531 DRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
R Y +K + PT +G +L EL +P +R+ +E + + S A ++
Sbjct: 506 KRGY-VKLVKGKCIPTALGISLATSLFQYAPELIEPTVRAKIEKSLNSIVKDGVSPAKLI 564
Query: 591 ANCLQQMKACFLDARLKKVKLLEAM 615
A + + + + K+ ++ +A+
Sbjct: 565 AEIKLEFSKYYQNLKAKREEIKKAL 589
>gi|409722530|ref|ZP_11269978.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
gi|448724451|ref|ZP_21706958.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
gi|445785768|gb|EMA36554.1| DNA topoisomerase I [Halococcus hamelinensis 100A6]
Length = 841
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 200/674 (29%), Positives = 322/674 (47%), Gaps = 50/674 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+++A ILS G + R N + + + G+ C ++GH++E
Sbjct: 3 LIITEKETAARNIADILSGG-GADV----ERRNGVNVYKWG--GRRC----VGLSGHVVE 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF Y W P +L A V E +++I +TL AR +V+ D DREGE
Sbjct: 52 NDFPPEYANWRDVQPVELIDADVVVEPHESRENIVRTLRLLARDADGVVIATDYDREGEL 111
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ V +RARFS+ +RE+ +A NL D + A A +ARQEIDL G
Sbjct: 112 IGKEAHDLVRDVSDAPV-KRARFSSFAEREVKEAFSNLEDLDFDLAAAGEARQEIDLVWG 170
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ K D +S G Q PTL +V+R EI+A + E +W +
Sbjct: 171 AALTRFLSLAAKQRGED--------FISVGRVQSPTLKLIVDREREIEAFDPETYWELFA 222
Query: 251 SHKSEEGTATFSWM-----RG--HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
++E + RG ++D + A +YE + TATV KV ++ + PP
Sbjct: 223 DLATDEAAFEVQYFDANEGRGTDRVWDESLAESVYEALQETSTATVEKVSRRTRTDDPPD 282
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T + RA+ S+ M +AE+LY +G+I+YPRT+ + ++ ++ +
Sbjct: 283 PFNTTQY-IRAAGSLGYSASRAMSLAEELYTSGYITYPRTDNTVYPDDLDIEDLLSDLST 341
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
H ++G A+ LLD P G + HPPIHPT S D ++YELVVR
Sbjct: 342 HREFGEDAEDLLDGDC----TPTEGDEETTDHPPIHPTGELPSGSALGDDEREIYELVVR 397
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
FLA V+ PA V + +G+ ++ Y VY + + +P G++
Sbjct: 398 RFLATVADPAEWEHLQVTARVGDHSLKANGKRLVEPGYHAVYPYFNTSENHVPDLDEGEE 457
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ LD T+PP ++ L+ M++ GIGT AT H+ I+KL DR Y D
Sbjct: 458 LPVEDVRLDEKETQPPRRRGQSRLIERMEEMGIGTKATRHNTIEKLYDRGYIESDPPR-- 515
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + A+V + + + S +E DM ++ G S +V + + A F +
Sbjct: 516 -PTRLARAVVDAGEQYADLVVSEAMTSRLEKDMAAIADGEISLDEVTEESREMLAAVFEE 574
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCL 661
+ +L G D + + + + G C E +++++++SR G+ VGC
Sbjct: 575 LHASREEL-------------GNDLRKSLKADKTLGPCPECGADLLVRQSRYGSHFVGCD 621
Query: 662 AFPQCRNAVWLPGS 675
+P C + LP S
Sbjct: 622 GYPDCEFTLPLPSS 635
>gi|294892870|ref|XP_002774271.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
gi|239879497|gb|EER06087.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
Length = 956
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/313 (46%), Positives = 185/313 (59%), Gaps = 20/313 (6%)
Query: 52 IRGQPCHMLMTSVTGHLMELDFDERYR-KWHSCDPADLYHAPVRKHVPEDKKDIKKTLEE 110
IR M++T+V GHLM LDF++ YR +W + DP LY+AP+ K V D + L
Sbjct: 273 IRALNVMMVVTAVRGHLMGLDFEQEYRGRWDTVDPETLYNAPLVKSVASDMGPVAGNLRR 332
Query: 111 EARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVD 170
AR C WLVLWLDCDREGE IA+EVIE+ R N L + RA FSAL ++ +A NL
Sbjct: 333 LARTCDWLVLWLDCDREGEAIAYEVIEIAREANARLNVYRANFSALTHADLTRACLNLAR 392
Query: 171 PNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNL-----VLSYGPCQFP 225
PN A AVDARQEIDLRIGASFTRF T+ K R L +LSYGPCQFP
Sbjct: 393 PNPHLAAAVDARQEIDLRIGASFTRFLTLRYK----------RRLPLLEGILSYGPCQFP 442
Query: 226 TLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEP 285
TLGFVV+R+ + E FWTI C+ W R LFD+ + ++Y+ C+Q
Sbjct: 443 TLGFVVQRWLLQRNFIREPFWTIKCTVSGPMVEVKLLWGRHRLFDHLATTLLYDRCLQHV 502
Query: 286 TAT----VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
+ VT V K ++ P PLST+E K AS R+ S M++AE+LY G ISYP
Sbjct: 503 RESGGGVVTHVSHNPKSRWRPLPLSTVEFAKLASSKLRIDSRQAMRIAEELYNRGIISYP 562
Query: 342 RTETDSFSSGTNL 354
RTETD F+ +L
Sbjct: 563 RTETDRFNPNIDL 575
>gi|448606973|ref|ZP_21659230.1| DNA topoisomerase I [Haloferax sulfurifontis ATCC BAA-897]
gi|445738401|gb|ELZ89921.1| DNA topoisomerase I [Haloferax sulfurifontis ATCC BAA-897]
Length = 840
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 200/691 (28%), Positives = 325/691 (47%), Gaps = 56/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L ARR + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGKVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ +RE+ +A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D SA Y+ + A V+ V ++ +
Sbjct: 226 KLTKDADGDAESFEAQYFYLDDDGTEAERIWDEESAESAYQTLLGVEAAEVSSVNRRTRA 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DTPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S S D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLSDDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V + G +G+ +L Y DVY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAEVEGLSLKANGKRLLEAGYHDVYPYFNSTESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGESLVLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + DV + +
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLG 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C + ++V++KSR G+
Sbjct: 579 DVF-------------EGLMESREELGKQLQDSLKADKTVGSCPDCGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+GC ++P C + LP S + + ++C
Sbjct: 626 FIGCDSYPDCTYTLPLP-STGKPLIMEDSCE 655
>gi|308805316|ref|XP_003079970.1| myosin class 11-1 (ISS) [Ostreococcus tauri]
gi|116058427|emb|CAL53616.1| myosin class 11-1 (ISS) [Ostreococcus tauri]
Length = 2117
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 169/434 (38%), Positives = 239/434 (55%), Gaps = 29/434 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNY----SIRGQPCHMLMTSVT 65
VL VAEKPS+A +AG L+ R+G + ++EF ++R + + TSV
Sbjct: 1589 VLCVAEKPSLAALIAGFLAPGGAFTTRKGFA--GDVHEFTGRGLGTMRSRAWRV--TSVK 1644
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ +DF ER++ W SCDP +L+ AP K D K ++ LE EA+ L+LWLDCD
Sbjct: 1645 GHVASVDFPERFQSWESCDPGELFAAPTVKRA--DGKMVRH-LESEAKGAMTLILWLDCD 1701
Query: 126 REGENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
REGENI FEVIE C + + RA+FSA+ + A+++L N+ A AVD
Sbjct: 1702 REGENICFEVIEACAPSMRTSGGGEREILRAKFSAVTKDSVENAMKSLGRANRNEALAVD 1761
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
ARQE+DL++G +FTRFQT N + D R V+SYGPCQ PTLGF V+R+ EI H
Sbjct: 1762 ARQELDLKMGVAFTRFQTQYFLNKY--DRLDAR--VVSYGPCQTPTLGFCVQRHLEIVRH 1817
Query: 241 ESEEFWTINC----SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
E +W + + + EE W R LFD +A ++ T V V +
Sbjct: 1818 VPEPYWVLEALFADADRGEE--VAPKWARSRLFDEEAARAFLQLVNDAKTFDVVSVESKA 1875
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
+ + P L+T+E+ K AS M + M+VAE LY AG ISYPRTE+ ++ SG L
Sbjct: 1876 EKRPRPSGLNTVEMLKAASAGLGMGAHRAMQVAERLYMAGHISYPRTESTAYPSGFALKE 1935
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
++ Q HP WG + + L++ GL P G D HPPI P + S+ + ++
Sbjct: 1936 TLRIQTSHPTWGEFVRGLVEE--GLM-TPPRRGVDAGDHPPITPMRASTEGDVGGGEAWR 1992
Query: 417 LYELVVRHFLACVS 430
LY+ + RHF+A VS
Sbjct: 1993 LYDFISRHFIATVS 2006
>gi|257053792|ref|YP_003131625.1| DNA topoisomerase I [Halorhabdus utahensis DSM 12940]
gi|256692555|gb|ACV12892.1| DNA topoisomerase I [Halorhabdus utahensis DSM 12940]
Length = 844
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 201/687 (29%), Positives = 331/687 (48%), Gaps = 52/687 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L V EK + A+ +A ILS + R N + + + GQ + ++GH++
Sbjct: 3 LIVTEKDNAARRIAEILSDDSA-----SGERRNGVNVYKWG--GQ----RVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y +W +PA+L A V +++I TL AR+ +V+ D DREGE
Sbjct: 52 VDFPPEYAEWRDVEPAELIDADVV--TTPTRENIVATLRSLARKADEVVIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ +RE+ +A +N + + A A +ARQ +DL G
Sbjct: 110 IGKEAYELIRE-ETDAPVERVRFSSITEREVQKAFENPDEIDFDLAAAGEARQIVDLIWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ K N +S G Q PTL +V+R EI+A + +++W I
Sbjct: 169 AALTRFLSLSAKQLG--------NDFISVGRVQSPTLKLIVDREREIEAFDPDDYWEILA 220
Query: 249 NCSHKSEEGTATFSWMRG-----HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+ + + A + + ++D +A Y + TATVT+VR++ + PP
Sbjct: 221 DLAKDGQGFEAQYFYDDDGSEAERVWDEAAAEAAYADLSESGTATVTEVRRRTRTDDPPA 280
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T AS S++ M +AE+LY G+++YPRT+ + + ++ G
Sbjct: 281 PFNTTAFISAASS-LGYSAQRAMSLAEELYTDGYLTYPRTDNTVYPDDLDPEELLGAFEG 339
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
++G A LLD P G + HPPIHPT D +++YELVVR
Sbjct: 340 SYEFGDDAASLLDQDE---IEPTRGETESTDHPPIHPTGELPDRDEVGADAWEIYELVVR 396
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F A V++PA A V AG +G+ +L + Y VY + S G +P G +
Sbjct: 397 RFFATVAEPATWAHLRVVAEAAGRSLKANGKRLLEEGYHAVYPYSSAGETFVPEVSEGDK 456
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ L++ T+PP ++ L+ M++ GIGT AT H+ ++KL DR Y ++D R
Sbjct: 457 LSIDAVELEAKQTQPPRRYGQSRLIQHMEEMGIGTKATRHNIVEKLYDRGY-VEDDPPR- 514
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + EA+V ++ + + + +E+DM ++ G + +V A + + F +
Sbjct: 515 -PTKLAEAVVSAAEEYADHVVSEEMTAQLEADMTAIAEGEATLEEVTAESREMLGEIFEE 573
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCL 661
R + ++ GE Q + + R G C E ++++++SR G+ VGC
Sbjct: 574 LRESRTEI-------------GEFLQESLKADRTLGPCPECGEDLLVRRSRQGSYFVGCD 620
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNS 688
FP+CR + LP S E VT TC
Sbjct: 621 GFPECRFTLPLP-STGEPQVTDETCED 646
>gi|126459728|ref|YP_001056006.1| DNA topoisomerase [Pyrobaculum calidifontis JCM 11548]
gi|126249449|gb|ABO08540.1| DNA topoisomerase [Pyrobaculum calidifontis JCM 11548]
Length = 596
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 202/616 (32%), Positives = 305/616 (49%), Gaps = 41/616 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK SVAK++A L G R R Y FNY G+ + + GH+M+
Sbjct: 3 LIVAEKRSVAKAIAQFL----GGSYRAQRVYGVPAYFFNYG--GEAVSL---GLMGHIMD 53
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF R W P L+HA + ++ K L+ ARR + L LD D EGE
Sbjct: 54 FDFAARENVWTWIPPEQLFHATPLLVIRDEAAQYVKALQSLARRADEVYLALDADVEGEA 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
IA+E RAVN L R +F+A+ ++I A Q N + V R +IDL +G
Sbjct: 114 IAYEAAIAVRAVNRRARLYRVKFNAVTPKDIRAAFQKPDTLNLKLVEKVFTRMQIDLTLG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A FTR T+ ++N + ++ LSYGPCQ P LG VV R E + E+++ I
Sbjct: 174 AVFTRALTLSVRN------SLEKGQFLSYGPCQTPVLGIVVNRELERINFKPEKYYVIKA 227
Query: 251 -----SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
H+ E G+ R +A +I V+ A V + + E PP PL
Sbjct: 228 VVDIGGHRVEMGSEVRYKTRAE--AEAAASLIKRGVVK---AAVYRPHKVE----PPEPL 278
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
T+ELE+RASR+ ++S+ T+ VAE+LY+AG+ISYPRTET + +L ++QE +
Sbjct: 279 ETVELERRASRWLGINSKKTLDVAEELYRAGYISYPRTETTIYPPSLDLREVLQE-LAKG 337
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW------SQDHYKLYE 419
+ G YA+ LL AG P G DD AHPPI+PTK ++ + + + + +Y+
Sbjct: 338 EHGEYARGLLK--AGF--RPTRGDSDDGAHPPIYPTKGATKDELYRRFGKAAAYAWPIYD 393
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
VVRHFLA +S PAV + + ++ G+ L + Y +Y +E +P
Sbjct: 394 FVVRHFLATLSPPAVVEKQKIVVSFGKIELEAEGQRTLDEGYWRIYPWERQAEKPLPVVK 453
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ +++ T+PPP ++E++LL+ M K GIGTDATM DHI + R Y ++
Sbjct: 454 PGEAAYAVKVSVVERETQPPPPMTESELLALMKKYGIGTDATMQDHIHTNVKRGY-MRLQ 512
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
+ PT +G AL EL +P +R+ +E + + A + A +
Sbjct: 513 KGKCTPTPLGMALATALFQYVPELIEPTVRAKIERALNSIVRDGVPPAKLAAEVKAEFAK 572
Query: 600 CFLDARLKKVKLLEAM 615
F + + ++ EA+
Sbjct: 573 YFEKLQQHRREIKEAL 588
>gi|448572840|ref|ZP_21640601.1| DNA topoisomerase I [Haloferax lucentense DSM 14919]
gi|445719612|gb|ELZ71291.1| DNA topoisomerase I [Haloferax lucentense DSM 14919]
Length = 840
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 199/692 (28%), Positives = 322/692 (46%), Gaps = 56/692 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L ARR + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGKVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ +RE+ +A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRGVNEDVPVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIDAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D A Y+ + A V+ V ++ +
Sbjct: 226 KLTKDADGDAESFEAQYFYLDDDGTEAERIWDEDDAEEAYQTLLGVEAAEVSSVNRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DTPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S S D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLSDDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V + G +G+ +L Y DVY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAEVEGLSLKANGKRLLEAGYHDVYPYFNSSESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGESLVLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + DV + +
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLG 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C + ++V++KSR G+
Sbjct: 579 EVF-------------EGLMESREELGKQLQDSLKADKTVGTCPDCGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
+GC ++P C + LP S + + +C
Sbjct: 626 FIGCDSYPDCTYTLPLP-STGKPLIMEESCED 656
>gi|448624140|ref|ZP_21670213.1| DNA topoisomerase I [Haloferax denitrificans ATCC 35960]
gi|445750107|gb|EMA01546.1| DNA topoisomerase I [Haloferax denitrificans ATCC 35960]
Length = 840
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 199/691 (28%), Positives = 323/691 (46%), Gaps = 56/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L ARR + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGKVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ RE+ +A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITKREVTEAFENPDDLDFNLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D SA Y+ + A V V ++ +
Sbjct: 226 KLTKDADGDAESFEAQYFYLDDDGTEAERIWDEESAESAYQTLLGVEAAEVASVNRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DTPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S + D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLTDDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V + G +G+ +L Y DVY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAEVEGLSLKANGKRLLEAGYHDVYPYFNSTESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGESLVLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + DV + +
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLG 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C + ++V++KSR G+
Sbjct: 579 DVF-------------EGLMESREELGKQLQDSLKADKTVGTCPDCGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+GC ++P C + LP S + + ++C
Sbjct: 626 FIGCDSYPDCTYTLPLP-STGKPLIMEDSCE 655
>gi|292654846|ref|YP_003534743.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|448292935|ref|ZP_21483256.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|448597061|ref|ZP_21654199.1| DNA topoisomerase I [Haloferax alexandrinus JCM 10717]
gi|291370931|gb|ADE03158.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|445571910|gb|ELY26453.1| DNA topoisomerase I [Haloferax volcanii DS2]
gi|445740942|gb|ELZ92447.1| DNA topoisomerase I [Haloferax alexandrinus JCM 10717]
Length = 840
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 199/692 (28%), Positives = 322/692 (46%), Gaps = 56/692 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGETA-----SAERMNGVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV KH +++I L ARR + + D DREGE
Sbjct: 56 VDFPPEYNDWRDVEPVELIGAPVEKHPT--QENIVAALRRLARRAGKVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ +RE+ +A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRDVNEDVPVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TRF ++ + N +S G Q PTL +V+R EI A + E++W
Sbjct: 174 AALTRFLSLSARQLG--------NDFISVGRVQGPTLKLIVDREREIDAFDPEDYWELFS 225
Query: 247 --TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
T + +E A + ++ ++D A Y+ + A V+ V ++ +
Sbjct: 226 KLTKDADGDAESFEAQYFYLDDDGTEAERIWDEDDAEEAYQTLLGVEAAEVSSVNRRTRT 285
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 286 DTPPAPFNTTQF-IRAAGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELL 344
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
G + A+ LL+ P G ++ HPPIHPT S S D + +Y
Sbjct: 345 GAFEGDRRFKEDAESLLEQEE---IEPTEGDNETTDHPPIHPTGELPSASDLSDDEWDVY 401
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVR F A V++ AV V + G +G+ +L Y DVY + + +P
Sbjct: 402 ELVVRRFFATVAEDAVWEHLRVVAEVEGLSLKANGKRLLEAGYHDVYPYFNSSESFVPDV 461
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G+ + + LD+ T+PP ++ L+ M++ GIGT AT HD I+KL DR Y D
Sbjct: 462 EEGESLVLSDTHLDAKQTQPPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESD 521
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
PT + A+V +D + + S +ESDM ++ G + DV + +
Sbjct: 522 PPR---PTRLARAVVEASEDFAKLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLG 578
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
F G+ R G+ Q + + + G C + ++V++KSR G+
Sbjct: 579 EVF-------------EGLMESREELGKQLQDSLKADKTVGTCPDCGGDLVVRKSRRGSY 625
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
+GC ++P C + LP S + + +C
Sbjct: 626 FIGCDSYPDCTYTLPLP-STGKPLIMEESCED 656
>gi|119871906|ref|YP_929913.1| DNA topoisomerase [Pyrobaculum islandicum DSM 4184]
gi|119673314|gb|ABL87570.1| DNA topoisomerase [Pyrobaculum islandicum DSM 4184]
Length = 604
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 194/609 (31%), Positives = 303/609 (49%), Gaps = 56/609 (9%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L VAEK SVA+++A L + G S Y F Y R + ++GH+M
Sbjct: 2 ILIVAEKRSVAQAIARYLGGTYKVEKIYGVSAYR----FLYGNR----EAVALGLSGHIM 53
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+ DF R W P +L+ + E+ + L AR+ + + L LD D EGE
Sbjct: 54 DYDFTARQNVWSWLPPEELFKTSPILVLREEAIKYVRALRSLARKAEEVYLALDADSEGE 113
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
I++EV V R VN ++ + R RF+A+ ++I A QN + + V +R +IDL +
Sbjct: 114 AISYEVALVVRLVNKNVKIYRVRFNAVTYKDIKIAFQNPTKLDLKQVEKVFSRMQIDLTL 173
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA FTRF T+ +++ ++ LSYGPCQ P LG VV R + + + E+++ I
Sbjct: 174 GAVFTRFLTLTVRDLL------EKGQFLSYGPCQTPVLGIVVTRELQRRNFKPEKYYVIK 227
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY------PPY 303
+ +RG+ + ++ V E AT K + Y PP
Sbjct: 228 AVVE----------IRGYKIEMSADVRFKTRKEAEAVATTIKRGVVKAAIYRPHYIQPPE 277
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PL T+ELE+RASR+ ++S+ T+ +AE+LY+AG+ISYPRTET + NL I+QE I
Sbjct: 278 PLETVELERRASRWLGINSKKTLDIAEELYRAGYISYPRTETTIYPPTLNLREILQELI- 336
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-----------GESRWSQ 412
+ Y + LL P G DD AHPPI+PTK ++ G++ W+
Sbjct: 337 RGEHSRYVEELLLRGF----RPTRGDSDDGAHPPIYPTKGATKSEIYKTFGKIGDNAWA- 391
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG 472
+Y+ VVRHFLA +S PA + + ++ G+ + + Y +Y +E
Sbjct: 392 ----IYDFVVRHFLATLSPPAQVEKQKIVVDFGKIQLEVEGQRTIDEGYWRIYPWERQSD 447
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+P G + + + T PPP +SE++LL+ M K GIGTDATM DHI + R
Sbjct: 448 RPLPRVYVGDEVHAIKVEVVERETEPPPPMSESELLALMKKYGIGTDATMQDHIYTNIKR 507
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y +K + PT +GE L + EL +P +R+ +E ++ + V N + L
Sbjct: 508 GY-MKLQKGKCIPTKLGETLAITLFQYTPELIEPTVRARIERAIQGI-VKNGISPNRL-- 563
Query: 593 CLQQMKACF 601
+Q++K+ F
Sbjct: 564 -IQEIKSEF 571
>gi|307354072|ref|YP_003895123.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
gi|307157305|gb|ADN36685.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
Length = 932
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 198/669 (29%), Positives = 320/669 (47%), Gaps = 52/669 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK A+ +AGIL++N+ ++ R Y F+ + + GH++E
Sbjct: 3 LIIAEKNIAAQRIAGILAENKKPSVK--REEGVNTYSFDDKV--------AIGLRGHVVE 52
Query: 71 LDFDERYRKWHS--CDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+DF+ Y W S P L A K E K I + ++ A++ +++ D DREG
Sbjct: 53 IDFEPGYSNWRSETHTPKSLIDAGTIKKPTE--KRIVQLIKRLAKKADHVIIATDFDREG 110
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E I E E+ RA N + ++RARFSA+ +EI A N + + A+A +ARQ +DL
Sbjct: 111 ELIGKEAYEIVRAANKTVPIKRARFSAITKQEITSAFANPAELDFNLAEAGEARQVVDLI 170
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GAS TRF ++ K N +LS G Q PTL +V+R EI+A E +W I
Sbjct: 171 WGASLTRFISLAAKR--------GGNNILSVGRVQSPTLAMIVDREKEIEAFVPEPYWMI 222
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ ++EE G +D SA + +EP TV +++ + + P P T
Sbjct: 223 SLDSETEEEKFEARHTEGKFWDKESAERSLK-GTKEPL-TVIDIKEGTRADHAPTPFDTT 280
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ASR +S+ + M++AE+LY G+ISYPRT+ + S +L GI+ E
Sbjct: 281 AYIVAASR-LGLSASNAMRIAEELYMNGYISYPRTDNTIYPSSLDLKGILTEL----KKS 335
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
P+ + + +A + +P G HPPIHPT +S + + +K+YELVVR FLA
Sbjct: 336 PFKREVEWVSANMRPSPTRGKKSSTDHPPIHPTAAAS-KGDMDETAWKVYELVVRRFLAT 394
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
+S A + GE ++++G+ + + Y VY + +P G++
Sbjct: 395 LSPDARWKTLKYTFDAGGEPYASTGQRLDYEGYRIVYTYSQAKEQALPVLAAGEKLPILD 454
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ L+ T PPP S++ L+ M++ G+GT +T HD I KL R Y PT +
Sbjct: 455 IRLEEKETLPPPRYSQSKLIQVMEELGLGTKSTRHDVIGKLFSRRYV---EGNPLKPTLV 511
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF--LDARL 606
G A+ +D + KP++ +E M+E+ SK V+ + + F L+A
Sbjct: 512 GRAVTESLEDHAGLITKPDMTRTLEEHMEEIKKSILSKDSVVQESREMLHEIFESLEANQ 571
Query: 607 KKVKLLEAMGIFFERWSGGE--DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
+ + G E D+ A VV +C +C +S M+ + ++ +GC +P
Sbjct: 572 EDI--------------GSEIMDKTAEERVVGKCPVCGKSLMI-RTTKGMAQFIGCTGYP 616
Query: 665 QCRNAVWLP 673
C + LP
Sbjct: 617 DCSFNIGLP 625
>gi|448731889|ref|ZP_21714172.1| DNA topoisomerase I [Halococcus salifodinae DSM 8989]
gi|445805167|gb|EMA55390.1| DNA topoisomerase I [Halococcus salifodinae DSM 8989]
Length = 836
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 197/716 (27%), Positives = 327/716 (45%), Gaps = 61/716 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+++A ILS R N + + + G+ C ++GH++E
Sbjct: 3 LIITEKETAARNIAEILSGESA-----DVERRNGVNVYKWG--GRRC----VGLSGHVVE 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF Y W +P +L A V E +++I TL AR +++ D DREGE
Sbjct: 52 NDFPAEYSNWRDVEPVELIDAEVVVEPHESRENIVSTLRLLARDADGVIIATDYDREGEL 111
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V +RRARFS+ + E+ +A +NL D + A A +ARQEIDL G
Sbjct: 112 IGKEAHDIVREVT-DAPIRRARFSSFAEPEVREAFENLDDLDFDLAAAGEARQEIDLVWG 170
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ K D +S G Q PTL +V+R EI+A + +++W + C
Sbjct: 171 AALTRFLSLSAKQMGSD--------FISVGRVQSPTLKLIVDREREIEAFDPDDYWELFC 222
Query: 251 SHKSEEGTATFSWMRG-------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
E T + ++D A +Y+ TA V +VR++ + PP
Sbjct: 223 DLTKNEATFEAQYFYDDDGSEAERVWDGDVAEAVYDDLRGASTAAVEEVRRRTRTDDPPA 282
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T + RA+ S++ M +AE LY AG+I+YPRT+ + ++ ++ E
Sbjct: 283 PFNTTQY-IRAASSLGYSAQRAMSLAESLYTAGYITYPRTDNTVYPDDLDVAELLSEFTD 341
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
HP++G A LL+ P G + HPPIHPT + D +YELVVR
Sbjct: 342 HPEFGDDADTLLEGEP----TPTEGDEETTDHPPIHPTGELPSATELGDDERAVYELVVR 397
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F A V++PA V + +G+ +L Y VY + +P G +
Sbjct: 398 RFFATVAEPAEWEHLRVTAAVGDHRLKANGKRLLEAGYHAVYPYVDSTENHVPDVEEGDK 457
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + ++ T+PP ++ L+ M+ GIGT AT H+ I+KL DR Y D
Sbjct: 458 LPVSEVRSEAKETQPPRRRGQSRLIETMESMGIGTKATRHNTIEKLYDRGYIENDPPR-- 515
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + +A+V ++ + +E DM ++ G + DV + + F +
Sbjct: 516 -PTTLAKAVVQAGKRFAEQVVSEAMTEQLEDDMDAIAAGEATLDDVTDESREMLATVFEE 574
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCL 661
+ R + G+ + + +V + G C + + +++++SR G+ VGC
Sbjct: 575 -------------LHDSREAIGDSLRNSLKVDKILGPCPDCGAALLVRRSRHGSYFVGCD 621
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGC 717
+P C + LP S + + TC+ + + R+ ++ G N GC
Sbjct: 622 GYPDCEFTLPLPSS-GKPVIQEETCD----------EHELREVKMLDGRNTFTHGC 666
>gi|448359807|ref|ZP_21548456.1| DNA topoisomerase I [Natrialba chahannaoensis JCM 10990]
gi|445641874|gb|ELY94946.1| DNA topoisomerase I [Natrialba chahannaoensis JCM 10990]
Length = 826
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 188/673 (27%), Positives = 318/673 (47%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A + K K++I TL +R+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDASIEKTAT--KENIVATLRILSRKATRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + + R RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDEEVPIHRVRFSSITENEVQDAFDEPDELDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N +S G Q PTL +V+R EI+A + E++W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLMVDREREIEAFDPEDYWELVA 221
Query: 251 S-HKSEEGTATFSWMRGH-------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
K EE + R +++ A ++E Q TATV V ++ + PP
Sbjct: 222 DVAKGEEAFEAQYFYRDEDGNEAERVWEEAVAEDVFETLSQRDTATVVDVNRRTRTDSPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ + +
Sbjct: 282 APFNTTQF-IRAASALGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GHP G A+ LL+ P G + HPPIHPT S D ++++ELVV
Sbjct: 341 GHPTLGESAESLLEADE---IEPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEVFELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V++ A+ V +A +G+ + Y DVY + S +P G+
Sbjct: 398 RRFYATVAEAAIWEHLKVVAEVAAHRLKANGKRLDKAGYHDVYPYFSTTENYVPDVSEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ T + L+ T+PP ++ L+ M+ GIGT +T H+ I+KL DR Y D
Sbjct: 458 EITITDVELEDKQTQPPRRYGQSRLIETMEDMGIGTKSTRHETIQKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + ++ + +E DM ++ G DV + + F
Sbjct: 517 --PTKLAMAVVEAAENYADRVVSEDMTAQLEQDMDAIASGEAGLEDVTDESREMLAEIFA 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ + C C E ++++++SR G+ +GC
Sbjct: 575 NLADSRDEIGDHL-----RKSLKDDKR-----LGPCPECGE-DLLVRRSRHGSYFIGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C N + LP +
Sbjct: 624 YPDCENTLPLPST 636
>gi|448343257|ref|ZP_21532197.1| DNA topoisomerase I [Natrinema gari JCM 14663]
gi|445623652|gb|ELY77052.1| DNA topoisomerase I [Natrinema gari JCM 14663]
Length = 826
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 195/673 (28%), Positives = 317/673 (47%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL ARR Q + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDADVEKTAT--KENIVATLRLLARRAQRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRNVDDDVPIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TR+ ++ D +S G Q PTL +V+R EIQA E EE+W +
Sbjct: 170 AALTRYLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIQAFEPEEYWELFA 221
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVI--------IYEMCVQEPTATVTKVRQQEKLKYPP 302
+ +E + + D + I +YE ATV V ++ + PP
Sbjct: 222 DLRKDETSFEAQYFYRDEDDNEAERIWEEPVANEVYETLADGDVATVVDVTRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ E +
Sbjct: 282 EPFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEDLLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP G A+ LL+ P G + HPPIHPT S D +++YELVV
Sbjct: 341 SHPSLGDSAESLLEADE---ITPTEGDEETTDHPPIHPTGEIPSRGDVSDDEWEVYELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V +G+ ++ Y D+Y + S +P G+
Sbjct: 398 RRFYATVADAAVWEHLKVVAEANDHRLKANGKRLIEPGYHDIYPYFSTTENYVPDVDEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + L+ T+PP ++ L+ M+ GIGT +T H+ ++KL DR Y D
Sbjct: 458 ELALSDVELEDKQTQPPRRYGQSRLIETMEGMGIGTKSTRHNTLEKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E+DM ++ G + DV + + ++ F
Sbjct: 517 --PTKLAMAVVDAAENYADRIVSEEMTAQLEADMDAIASGEATLDDVTDDSREMLEEIF- 573
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
A L + E +G R S +D++ + C C E ++++++SR G+ +GC
Sbjct: 574 -ANLADSR--EEIGDHL-RKSLKDDKR-----LGPCPECGE-DLLVRRSRHGSYFIGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C N + LP +
Sbjct: 624 YPDCENTLPLPST 636
>gi|448395862|ref|ZP_21568956.1| DNA topoisomerase I [Haloterrigena salina JCM 13891]
gi|445660443|gb|ELZ13239.1| DNA topoisomerase I [Haloterrigena salina JCM 13891]
Length = 826
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 190/673 (28%), Positives = 320/673 (47%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF + Y W +P +L A V K K++I TL AR+ + + D DREGE
Sbjct: 52 VDFPDEYSDWRDVEPVELIDANVEKTAT--KENIVATLRILARKATRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRDVDEEVPIRRVRFSSITENEVQSAFDDPDDLDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N +S G Q PTL +V+R EIQA + E +W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPEIYWELFG 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+E T + +++ A +YE + +ATV V ++ + PP
Sbjct: 222 DLTKDETTFEAQYFYRDEDDNEAERVWEEAVADEVYETLAERDSATVVDVNRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ + +
Sbjct: 282 TPFNTTQF-IRAAGALGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP G A+ LL+ + P G + HPPIHPT S D ++++ELVV
Sbjct: 341 SHPTLGDSAESLLEADEIV---PTEGDEETTDHPPIHPTGEIPTRGDVSDDEWEVFELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V + ++G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFYATVADAAVWEHLKVVTEVDDYRLKSNGKRLVEPGYHDVYPYFSTSENYVPDVAEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ T + L+ T+PP ++ L+ M+ GIGT +T H+ ++KL DR Y D
Sbjct: 458 ELALTDVELEEKETQPPRRYGQSRLIETMEDMGIGTKSTRHNTLEKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V + + + + +E DM ++ G + ADV + ++ F
Sbjct: 517 --PTKLAMAVVDAAESYADRVVSEEMTAQLEQDMDAIASGEATLADVTDESREMLEEIFA 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ + C C E ++++++SR G+ VGC
Sbjct: 575 NLADSRDEIGDHL-----RKSLKDDKR-----LGPCPECGE-DLLVRRSRHGSYFVGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C N + LP +
Sbjct: 624 YPDCENTLPLPST 636
>gi|284164738|ref|YP_003403017.1| DNA topoisomerase I [Haloterrigena turkmenica DSM 5511]
gi|284014393|gb|ADB60344.1| DNA topoisomerase I [Haloterrigena turkmenica DSM 5511]
Length = 827
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 191/674 (28%), Positives = 321/674 (47%), Gaps = 48/674 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF + Y W +P +L A V K K++I TL AR+ + + D DREGE
Sbjct: 52 VDFPDEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILARKATRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRDVDEEVPIRRVRFSSITENEVQSAFDDPDDLDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N +S G Q PTL +V+R EIQA + E +W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPETYWELFG 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
E+ T + +++ A +YE + +ATV V ++ + PP
Sbjct: 222 DLTKEDTTFEAQYFYRDEDDNEAERVWEEAVADEVYETLAERDSATVVDVNRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ + +
Sbjct: 282 EPFNTTQF-IRAAGAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFSSGESRWSQDHYKLYELV 421
HP G A+ LL+ + P G + HPPIHPT + S S D +++YELV
Sbjct: 341 SHPTLGESAESLLEADEIV---PTEGDEETTDHPPIHPTGEIPSRGGDVSDDEWEVYELV 397
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V+ AV V + ++G+ ++ Y DVY + S +P G
Sbjct: 398 VRRFYATVADAAVWEHLKVVTEVDDYRMKSNGKRLVEPGYHDVYPYFSTSENYVPDVTEG 457
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ T + L+ T+PP ++ L+ M+ GIGT +T H+ ++KL DR Y D
Sbjct: 458 EELALTDVELEEKETQPPRRYGQSRLIETMEDMGIGTKSTRHNTLEKLYDRGYIESDPPR 517
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT + A+V ++ + + + +E DM ++ G + DV + ++ F
Sbjct: 518 ---PTKLAMAVVDAAENYADRVVSEEMTAQLEQDMDAIASGEATLDDVTDESREMLEEIF 574
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
+ + ++ + + R S +D++ C C E ++++++SR G+ VGC
Sbjct: 575 ANLADSRDEIGDHL-----RKSLKDDKRLG-----PCPECGE-DLLVRRSRHGSYFVGCD 623
Query: 662 AFPQCRNAVWLPGS 675
+P C N + LP +
Sbjct: 624 GYPDCENTLPLPST 637
>gi|448714078|ref|ZP_21702095.1| DNA topoisomerase I [Halobiforma nitratireducens JCM 10879]
gi|445788962|gb|EMA39658.1| DNA topoisomerase I [Halobiforma nitratireducens JCM 10879]
Length = 827
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 194/674 (28%), Positives = 324/674 (48%), Gaps = 48/674 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL AR+ + + D DREGE
Sbjct: 52 VDFPPEYSDWRDVEPVELIDADVEKTAT--KENIVATLRILARKANTVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + +RR RFS++ + E+ A +N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVREVNETVPIRRVRFSSITENEVTDAFENPDDIDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EIQA + EE+W +
Sbjct: 170 AALTRFLSLSAGQLGDD--------FISVGRVQSPTLKLIVDRKREIQAFDPEEYWELFA 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ ++ + + +++ +A +++ ATV V ++ + PP
Sbjct: 222 DLQKDDTSFEAQYFYRDEDDNEAERVWEEATAEEVHDTLSSRDAATVVDVNRRTRTDAPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + ++ E +
Sbjct: 282 APFNTTQF-IRAAGALGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLEPEELLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFSSGESRWSQDHYKLYELV 421
GH G A++LL+ A P G + HPPIHPT + S + D +++YELV
Sbjct: 341 GHSTLGDSAEQLLEADA---LEPTRGDEETTDHPPIHPTGEIPSRGGDVNDDEWEIYELV 397
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V++ AV V + +G+ ++ Y DVY + S +P G
Sbjct: 398 VRRFYATVAEAAVWEHLKVVAEVDDCRLKANGKRLVEPGYHDVYPYFSTAENYVPDVDEG 457
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ T + L++ T+PP ++ L+ M+ G+GT +T H+ ++KL DR Y D
Sbjct: 458 ERLGLTDVELEAKETQPPRRYGQSRLIETMEDQGLGTKSTRHNTLEKLYDRGYIESDPPR 517
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT + A++ ++ + + + +E+DM ++ G + ADV + ++ F
Sbjct: 518 ---PTKLAMAVIDAAENYADRVVSEEMTAQLEADMDAIASGEATLADVTDESREMLEEIF 574
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
A L + E +G R S +D++ + C C E +++++ SR G+ VGC
Sbjct: 575 --ANLADSR--EEIGDHL-RKSLKDDKR-----LGPCPECGE-DLLVRSSRHGSYFVGCD 623
Query: 662 AFPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 624 GYPDCEFTLPLPST 637
>gi|399216452|emb|CCF73140.1| unnamed protein product [Babesia microti strain RI]
Length = 810
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 199/648 (30%), Positives = 307/648 (47%), Gaps = 70/648 (10%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+NVL VAEKPS+A+++A LS N+ + + G+ ++ + G + +T TGH
Sbjct: 1 MNVLVVAEKPSIAEAIANALS-NKKVNPKTGKF---PVWIITAGVLGPKSTLHITCTTGH 56
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ L F +Y W + DP +L+ A V + + I L A+ C+ L+L LD DRE
Sbjct: 57 IFNLSFHSKYNNWENTDPLELFSADVIQTY-ANSDAIANHLSSIAKSCESLILALDNDRE 115
Query: 128 GENIAFEVIEV--------CRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
GENI FEVI + C+ + ++ RARFS+L+ +I A +NL PN+ +DAV
Sbjct: 116 GENICFEVISIVYKHLKSECKGLGKNIF--RARFSSLVKCDIINAFKNLGMPNKNESDAV 173
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
ARQEIDL++G +FTRFQT+ + D + ++SYGPCQ PTL F VER+ +I++
Sbjct: 174 LARQEIDLKLGCAFTRFQTLSFQ----DKFGNLNTKLISYGPCQTPTLFFCVERFKQIKS 229
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+ + ++ V+E ++ V K
Sbjct: 230 FQPQTYYR----------------------------------VKEEVFVLSAVYSSVKTI 255
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
P L+T+ L K AS+ + H + VAE LY +G+ISYPRTET ++ + G++
Sbjct: 256 ARPTALNTVNLLKMASQQLHLGPHHALSVAEKLYLSGYISYPRTETMTYPKNFDTEGVLN 315
Query: 360 --EQIGHPD---WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
P G + + + R G D HPPI P + S S D
Sbjct: 316 MLRSANFPRDIFTGSKTDSIKFNLNQICR-----GKDAGDHPPITPVSVPN-PSYLSSDE 369
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV 474
+Y L+VR+FL +S E A E F + ++ + + S
Sbjct: 370 LNIYLLIVRNFLESISVDCKYKEEKYSFTAASETFIYTCTKVVEPGFTSISNKSSLTESS 429
Query: 475 IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY 534
T G + + S T PP LLSE+DLL M+K GIGTDA+M HI + R Y
Sbjct: 430 PITASAGDIYRLCGCEIRSAQTTPPSLLSESDLLELMEKNGIGTDASMATHINNICLRGY 489
Query: 535 AIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
N R PT +G++LV GY + EL P +R +ES ++ G + V+ + L
Sbjct: 490 VKIVGNRRLEPTKLGQSLVYGYLQVDPELVLPTVRGNIESLCDSIATGKATLETVINHSL 549
Query: 595 QQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
Q + F+ +++A F + ++ ED G ++ +CG+C
Sbjct: 550 QIFRVKFIYFTANIDSMVQA---FMQNFTLAED---LGTLMSRCGVCN 591
>gi|429190846|ref|YP_007176524.1| topoisomerase IA [Natronobacterium gregoryi SP2]
gi|448327153|ref|ZP_21516488.1| DNA topoisomerase I [Natronobacterium gregoryi SP2]
gi|429135064|gb|AFZ72075.1| topoisomerase IA [Natronobacterium gregoryi SP2]
gi|445608936|gb|ELY62752.1| DNA topoisomerase I [Natronobacterium gregoryi SP2]
Length = 827
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 191/674 (28%), Positives = 320/674 (47%), Gaps = 48/674 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL AR+ + + D DREGE
Sbjct: 52 VDFPPEYSDWRDVEPVELIDADVEKTAT--KENIVATLRILARKANTVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + +RR RFS++ + E+ A D + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVREVNEAVPIRRVRFSSITENEVENAFDEPEDLDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EIQA + E++W +
Sbjct: 170 AALTRFLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWELFA 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ + +E T + +++ +A +Y+ ATV V ++ + PP
Sbjct: 222 ALEKDETTFEAQYFYRDEDDNEAERVWEEVTAEEVYDTLSSRDAATVVDVNRRTRTDAPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P ST + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ E +
Sbjct: 282 APFSTTQF-IRAAGALGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFSSGESRWSQDHYKLYELV 421
GH G A+ LL+ G P G + HPPIHPT + + + D +++YELV
Sbjct: 341 GHSTLGESAEALLE---GDDIEPTRGDEETTDHPPIHPTGEIPARGGDVNDDEWEIYELV 397
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V++ AV V + +G+ ++ Y DVY + S +P G
Sbjct: 398 VRRFYATVAEAAVWEHLKVVAEVDDYRLKANGKRLVEPGYHDVYPYFSTAENYVPDVDEG 457
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ T + L++ T+PP ++ L+ M+ G+GT +T H+ ++KL DR Y D
Sbjct: 458 EELCLTEVELEAKETQPPRRYGQSRLIETMEDQGLGTKSTRHNTLEKLYDRGYIESDPPR 517
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT + A+V + + + + +E DM ++ G + DV + ++ F
Sbjct: 518 ---PTKLAMAVVDAAESYADRVVSEAMTAQLEDDMDAIASGEATLEDVTDESREMLEEIF 574
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
+ + ++ + + R S +D++ + C C E +++++ SR G+ VGC
Sbjct: 575 TNLADSREEIGDHL-----RKSLKDDKR-----LGPCPECGE-DLLVRSSRHGSYFVGCD 623
Query: 662 AFPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 624 GYPDCEFTLPLPST 637
>gi|448365799|ref|ZP_21554053.1| DNA topoisomerase I [Natrialba aegyptia DSM 13077]
gi|445654408|gb|ELZ07259.1| DNA topoisomerase I [Natrialba aegyptia DSM 13077]
Length = 826
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 190/673 (28%), Positives = 320/673 (47%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ ++ ILS RE +YE+ G C ++GH++
Sbjct: 3 LIITEKNNAARRISDILSGGTYDTTRENGV---NVYEWG----GTRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL +R+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILSRKATQVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDDEVPIRRVRFSSITETEVTDAFDEPDELDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ N +S G Q PTL +V+R EIQA + E++W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLRLIVDREREIQAFDPEDYWELVA 221
Query: 249 NCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ + E A + + +++ +A ++E Q TATV V ++ + PP
Sbjct: 222 DVAKGEEAFEAQYFYYDEDDNEAERVWEEATAEEVFETLSQRETATVVDVNRRTRTDSPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ + +
Sbjct: 282 APFNTTQF-IRAAGSLGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GHP G A+ LLD + P G + HPPIHPT S D ++++ELVV
Sbjct: 341 GHPSLGESAESLLDADDIV---PTEGDEETTDHPPIHPTGEIPARGDVSDDEWEIFELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V A +G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFYATVAADAVWEHLKVVAEAADHRLKANGKRLVEPGYHDVYPYFSTTENYVPDVEEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
T + L+ T+PP ++ L+ M+ GIGT +T H+ I+KL DR Y D
Sbjct: 458 AISITDVELEDKQTQPPRRYGQSRLIETMEDMGIGTKSTRHETIQKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + ++ + +E+DM ++ G DV + ++ F
Sbjct: 517 --PTKLAMAVVEAAENYADRVVSEDMTAQLEADMDAIASGEAGLEDVTDESREMLEEIFA 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ + C C E ++++++SR G+ VGC
Sbjct: 575 NLADSRDEIGDHL-----RKSLKDDKR-----LGPCPDCGE-DLLVRRSRHGSYFVGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 624 YPDCEFTLPLPST 636
>gi|428178558|gb|EKX47433.1| hypothetical protein GUITHDRAFT_50898, partial [Guillardia theta
CCMP2712]
Length = 596
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 200/604 (33%), Positives = 292/604 (48%), Gaps = 42/604 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYN--------KIYEFNYSIRGQPCH--- 58
VL +AEKPSVA +VA ILS + RSR N +I++F Y QP
Sbjct: 1 VLCIAEKPSVANTVATILSNGRK------RSRSNPAGHAPMCRIHDFFYHF--QPARRKS 52
Query: 59 -MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRK--HVPEDKKDIKKTLEEEARRC 115
+ TSV GH+ ++FDE DP +L+ A V+K +++++ + L A
Sbjct: 53 LISFTSVIGHVEAMEFDEDT----GSDPRNLFGARVKKVFETSVEEEEVDRHLLSLAEGR 108
Query: 116 QWLVLWLDCDREGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDPN 172
Q+L LWLDCDREGENI FE++ + R+ L V+ RARFSAL + ++ + PN
Sbjct: 109 QYLFLWLDCDREGENICFEILRLFRSRGYFLSDDVVFRARFSALSSDSLKRSFSSPGKPN 168
Query: 173 QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
+ A AVDARQE+DL++G +FTR T D + +LS+GPCQ PTL F V
Sbjct: 169 EEEAMAVDARQEMDLKVGVTFTRLLTRRFLEGARRKFNDSKLKLLSFGPCQTPTLFFCVR 228
Query: 233 RYWEIQAHESEEFWTINCSHK-----SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTA 287
R EI+ +FW I + S T WMRG FD A++ C Q A
Sbjct: 229 RDEEIRRFVPRKFWRIEVEVEVLVGGSRSRTLDLKWMRGSTFDRNQALLALRSCQQTSHA 288
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDS 347
+ +V ++E+ PP PL+T+ L + AS S TM +AE LY G+ISYPRTET
Sbjct: 289 RLVRVEKKERSLDPPLPLNTVALLQLASLRLGFSPAKTMAIAERLYTRGYISYPRTETSR 348
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
F + +++ + G + +++L+ G P S G D HPPI P K S
Sbjct: 349 FPPSFDPSDLLRPLVDGSQLGRFVEKMLEE--GCVSVP-SRGVDRGDHPPITPMKSGSMG 405
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
S ++ +L+ELV + +A + E + G + G R
Sbjct: 406 S-LGREERRLWELVASNTVASLMPTFRFLERRGIFKLGG---AEDGDEEGKGRTQGAGRG 461
Query: 468 ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
G G+ ++ + T P L EA+L+ MDK GIGTDA++ HI
Sbjct: 462 RGRGRGQGKEEQEGESVPVRSVRVVEEETSAPEPLKEAELVQLMDKHGIGTDASISSHIA 521
Query: 528 KLLDRFYAIKDANTR-FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+L R Y R PT +G A++ G ++ L +P LR+ ME + ++ G K
Sbjct: 522 NILARRYVQVRLGVRHLKPTELGLAMIAGLREVDESLVQPRLRAAMEEQVSLIAQGAARK 581
Query: 587 ADVL 590
+V+
Sbjct: 582 EEVV 585
>gi|383622530|ref|ZP_09948936.1| DNA topoisomerase I, partial [Halobiforma lacisalsi AJ5]
Length = 709
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 188/673 (27%), Positives = 318/673 (47%), Gaps = 45/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL AR+ + + D DREGE
Sbjct: 52 VDFPAEYSDWRDVEPVELIDADVEKTAT--KENIVATLRILARKANRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + +RR RFS++ + E+ A +N + + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVRDVNEEVPIRRVRFSSITENEVQDAFENPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EIQA + E++W +
Sbjct: 170 AALTRFLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWELFA 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
++ + + +++ +A +YE ATV V ++ + PP
Sbjct: 222 DLAKDDTSFEAQYFYRDEDGNEAERVWEEATADEVYETLADREAATVVDVNRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + ++ E +
Sbjct: 282 TPFNTTQF-IRAAGALGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLEPADLLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GH G A+ LL+ A P G + HPPIHPT S D ++++ELVV
Sbjct: 341 GHSVLGDSAESLLEDADDEI-EPTRGDEETTDHPPIHPTGEIPSRGDVSDDEWEIFELVV 399
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V + ++G+ ++ Y +VY + S +P G+
Sbjct: 400 RRFYATVADAAVWEHLKVVTEVDEYRLKSNGKRLVEPGYHEVYPYFSTAENYVPDVDEGE 459
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ T + L+ T+PP ++ L+ M+ GIGT +T H+ ++KL DR Y D
Sbjct: 460 ELRLTDVELEEKQTQPPRRYGQSRLIETMEDMGIGTKSTRHNTLEKLYDRGYIESDPPR- 518
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E+DM ++ G ++V + ++ F
Sbjct: 519 --PTKLAMAVVDAAENYADRVVSEEMTAQLEADMDAIASGEADLSEVTDESREMLEEIFA 576
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ + C C E +++++ SR G+ VGC
Sbjct: 577 NLAESRDEIGDHL-----RKSLKDDKR-----LGPCPECGE-DLLVRSSRHGSYFVGCDG 625
Query: 663 FPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 626 YPDCEYTLPLPST 638
>gi|300711966|ref|YP_003737780.1| DNA topoisomerase [Halalkalicoccus jeotgali B3]
gi|448295656|ref|ZP_21485720.1| DNA topoisomerase I [Halalkalicoccus jeotgali B3]
gi|299125649|gb|ADJ15988.1| DNA topoisomerase [Halalkalicoccus jeotgali B3]
gi|445583755|gb|ELY38084.1| DNA topoisomerase I [Halalkalicoccus jeotgali B3]
Length = 853
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 210/770 (27%), Positives = 346/770 (44%), Gaps = 87/770 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIAAILSGESA-----EVERQNGVNVYRWG--GKRC----IGLSGHVVA 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K +++I +T+ AR + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIGAAVEKTPT--QENIVRTVRLLARDANRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ D E+H A + + + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVRDVNDGAEIDRVRFSSITDGEVHSAFDDPDEIDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EI+A + E +W I
Sbjct: 170 AALTRFLSLSARQLGDD--------FISVGRVQTPTLKLIVDREREIEAFDPEAYWEIFA 221
Query: 251 SH-KSEEGTATFSWMRGH-------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ K EE + R ++D A +YE + A V V ++ + PP
Sbjct: 222 NLVKGEESFDAQYFYRDEDGNEAERVWDGQRAEAVYETLREASEARVESVSRRTRTDAPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++
Sbjct: 282 APFNTTQF-IRAASSIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPEDLDPRELLDAFT 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
G+ +G A+ LL+ P G + HPPIHPT+ + S +++YELVV
Sbjct: 341 GNRTFGEDAETLLEREE---ITPTEGDEETTDHPPIHPTEELPTKGELSDAEWEVYELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ A V + + +G+ ++ Y VY + S V+P G+
Sbjct: 398 RRFFATVADSARWEHLKVVLEVGEHRLKANGKRLVEPGYHAVYPYFSTNENVVPDVEEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
T + ++ T+PP ++ L+ M++ GIGT +T H+ I+KL DR Y D+
Sbjct: 458 SLALTEIRIEDKETQPPRRYGQSRLIETMEEMGIGTKSTRHNTIEKLYDRGYIENDSPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E DM+ ++ G K +V + ++ F
Sbjct: 517 --PTKLATAVVEAGEEYADRVVSEAMTAQLEDDMQAIAAGEKDLDEVAGESREMLERVFD 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQES--NMVLKKSRDGNLMVGC 660
D L+E+ R G+ Q + + + G C ES ++++++SR G+ VGC
Sbjct: 575 D-------LMES------REEIGDHLQKSLKADKTLGPCPESGHDLLVRRSRRGSYFVGC 621
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGC--- 717
+P C + LP + + + TC + R ++ G GC
Sbjct: 622 DGYPDCEYTLPLPNT-GKPLILEATCE----------EHDLRHVKMLAGRGTFVHGCPQC 670
Query: 718 ------------IGGCDETLRQLIEICGTGSRIPAR--GRGPTASSNNGQ 753
IG C E CG GS P+ G P A++ +GQ
Sbjct: 671 KADEADEEEDRVIGACPE--------CGEGSIPPSSRDGEDPAATAEDGQ 712
>gi|448694566|ref|ZP_21697066.1| DNA topoisomerase I [Halobiforma lacisalsi AJ5]
gi|445785151|gb|EMA35946.1| DNA topoisomerase I [Halobiforma lacisalsi AJ5]
Length = 844
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 188/673 (27%), Positives = 318/673 (47%), Gaps = 45/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL AR+ + + D DREGE
Sbjct: 52 VDFPAEYSDWRDVEPVELIDADVEKTAT--KENIVATLRILARKANRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + +RR RFS++ + E+ A +N + + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVRDVNEEVPIRRVRFSSITENEVQDAFENPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EIQA + E++W +
Sbjct: 170 AALTRFLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWELFA 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
++ + + +++ +A +YE ATV V ++ + PP
Sbjct: 222 DLAKDDTSFEAQYFYRDEDGNEAERVWEEATADEVYETLADREAATVVDVNRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + ++ E +
Sbjct: 282 TPFNTTQF-IRAAGALGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLEPADLLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GH G A+ LL+ A P G + HPPIHPT S D ++++ELVV
Sbjct: 341 GHSVLGDSAESLLEDADDEI-EPTRGDEETTDHPPIHPTGEIPSRGDVSDDEWEIFELVV 399
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V + ++G+ ++ Y +VY + S +P G+
Sbjct: 400 RRFYATVADAAVWEHLKVVTEVDEYRLKSNGKRLVEPGYHEVYPYFSTAENYVPDVDEGE 459
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ T + L+ T+PP ++ L+ M+ GIGT +T H+ ++KL DR Y D
Sbjct: 460 ELRLTDVELEEKQTQPPRRYGQSRLIETMEDMGIGTKSTRHNTLEKLYDRGYIESDPPR- 518
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E+DM ++ G ++V + ++ F
Sbjct: 519 --PTKLAMAVVDAAENYADRVVSEEMTAQLEADMDAIASGEADLSEVTDESREMLEEIFA 576
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ + C C E +++++ SR G+ VGC
Sbjct: 577 NLAESRDEIGDHL-----RKSLKDDKR-----LGPCPECGE-DLLVRSSRHGSYFVGCDG 625
Query: 663 FPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 626 YPDCEYTLPLPST 638
>gi|340059110|emb|CCC53485.1| putative DNA topoisomerase III, fragment [Trypanosoma vivax Y486]
Length = 782
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 187/634 (29%), Positives = 291/634 (45%), Gaps = 84/634 (13%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+SVA LS Q ++ R R +YE++ G P +TS TGH+
Sbjct: 5 VLMVAEKPSIAESVAQHLSNGQAVK----RPRALPVYEYDGHFHGYPARFCVTSTTGHIF 60
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF +++ W D L+ APV E+ + K L EA C LVLWLDCDREGE
Sbjct: 61 SCDFTPQHQSWDRTDEEVLFSAPVVWK--EESGKVSKHLAHEAEGCDTLVLWLDCDREGE 118
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FEV++ ++ R IH N W A +E
Sbjct: 119 NICFEVMQ------------------VVARSIHDMR------NIWRAKFSAITRE----- 149
Query: 190 GASFTRFQTMLLKNFHI-DSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
A F+ + N H+ D+V+ + L L+ Q
Sbjct: 150 -AITEAFRNLGRPNKHLSDAVSCRQELDLNRSGAQI------------------------ 184
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
TF W+RG +FD A ++++ V V + P L+T+
Sbjct: 185 -----------TFEWVRGRVFDELIARLLHQKVSHNKVGKVVDVSVGADTRARPTALNTV 233
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
EL K AS+ + H M++AE+LY +G+ISYPRTE+ ++ S + G + + HP WG
Sbjct: 234 ELMKVASKLLGIGPHHAMQLAENLYVSGYISYPRTESTAYPSSFDFKGALAQHERHPQWG 293
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
Y Q LL + P G D HPPI P + ++ S D ++LYE + RHF+A
Sbjct: 294 AYVQGLLKDR---YTRP-KAGKDAGDHPPITPMR-AANPGELSSDSWRLYEYITRHFIAT 348
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH-GQQFIPT 487
+S +T + + + GE F+ +G+V+ + ++ + IPT + G F +
Sbjct: 349 LSPDCKLCKTKLVVELGGEFFTFTGKVVEDPGFTEILSHFAVKDDKIPTNIQVGSDFPMS 408
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+ L +G T+PP L+E+DL+ M++ GIGTDA++ H+ +++R Y PT
Sbjct: 409 DVRLQAGQTQPPGYLTESDLIGMMERHGIGTDASISQHVNNIVERGYCTVKPGRVMQPTK 468
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G L+ G + EL P +RS +E + ++ G +VL++ L F +
Sbjct: 469 LGIVLIHGIKSIDPELVLPLVRSKVEEYVTLIAEGKAGLDEVLSSVLDLFFGKFRYFKEN 528
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ MG F + A+G+ + +CG C
Sbjct: 529 IERFDALMGASFTSLA------ASGKPITRCGNC 556
>gi|126178720|ref|YP_001046685.1| DNA topoisomerase [Methanoculleus marisnigri JR1]
gi|125861514|gb|ABN56703.1| DNA topoisomerase I [Methanoculleus marisnigri JR1]
Length = 931
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 202/701 (28%), Positives = 329/701 (46%), Gaps = 50/701 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK A +A IL+ N+ ++R + Y F+ + + GH++E
Sbjct: 3 LIIAEKNISANRIAQILAGNE--KVRATKDGSVSTYSFDTKT--------VVGLKGHVVE 52
Query: 71 LDFDERYRKWHS--CDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+DF+ Y W S P L A + K P +KK I +++ +R+ + + D D EG
Sbjct: 53 VDFEPGYTNWRSETHTPRTLIDAGIVKK-PTEKK-IVNLIQKLSRKADLVTIATDYDTEG 110
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E I E E+ RAVN ++ + RARFSA+ EI A +NL D + A A +ARQ +DL
Sbjct: 111 ELIGKEAYELVRAVNPNVRINRARFSAITPAEIRTAFENLTDLDFDLAAAGEARQTVDLM 170
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GAS TRF ++ + + +LS G Q PTL +VER EI++ + +W +
Sbjct: 171 WGASLTRFISLAARRGGTN--------ILSVGRVQSPTLAMIVEREREIESFVPQTYWML 222
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ + + + T G D+ +A + E +EP VT V++ +K P P T
Sbjct: 223 SLATEKDGVTIEARHTAGRFTDHEAA-LAAEAGTKEPL-VVTDVKEGQKNDRAPTPFDTT 280
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ASR +S+ + M++AEDLY G+ISYPRT+ + NL+ I+ G G
Sbjct: 281 TFIVAASR-LGLSAANAMRLAEDLYMNGYISYPRTDNTVYPKSLNLNAILNTLKG----G 335
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+ + + P G + HPPIHPT ++ E+ QD +K+YELVVR FLA
Sbjct: 336 VFDKDVAWVQQNRRPVPTRGKKESTDHPPIHPTGSATREA-LGQDRWKVYELVVRRFLAT 394
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
+S A A T + +GE + +G +L + +Y + ++P G++
Sbjct: 395 LSPDANWATTRCTFDASGEAYKATGGRLLYAGWRRIYPYSEAKENILPVLAPGERLPIKN 454
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ L+ T+PP S++ L+ M++ G+GT +T H+ I KL+ R Y PT +
Sbjct: 455 VNLEEKETQPPARYSQSRLIQVMEELGLGTKSTRHEVIGKLVSRRYV---EGNPLRPTLV 511
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G A++ D+ + +P + +E M+ + +S+ DV+ + + F K
Sbjct: 512 GRAVIDALDNHAETITEPEMTQTLEEHMQLIKQSQRSRDDVVTESREMLHRVFDKLEAHK 571
Query: 609 VKL-LEAMGIFFERWSGGEDQQAAGEV-VRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
++ E M E + G ++ +R G+ Q +GC +P+C
Sbjct: 572 SEIGTEIMEQTAEEHTVGPCPDCGHDLRIRHIGVSQ--------------FIGCTGYPEC 617
Query: 667 RNAVWLPGSVSEAAVTTN-TCNSCTPGPVYLIQFKFRQHEI 706
R + LPGS A+ TC V LI+ R +I
Sbjct: 618 RFNISLPGSTWGKAIRVEATCPEHNLSHVRLIRKGARPWDI 658
>gi|16554466|ref|NP_444190.1| DNA topoisomerase I [Halobacterium sp. NRC-1]
gi|169235326|ref|YP_001688526.1| DNA topoisomerase I [Halobacterium salinarum R1]
gi|167726392|emb|CAP13175.1| DNA topoisomerase I [Halobacterium salinarum R1]
Length = 829
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 195/677 (28%), Positives = 312/677 (46%), Gaps = 55/677 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFN-YSIRGQPCHMLMTSVTGHLM 69
L V EK + A+ +A ILS EG + + N Y G+ C ++GH++
Sbjct: 3 LIVTEKNNAARRIADILS--------EGGASTTQTAGVNVYEWGGRRC----IGLSGHVV 50
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF Y W +PA+L HA V K ++DI L+ AR +V+ D DREGE
Sbjct: 51 GVDFPPEYNDWRDVEPAELIHADVVKDPT--QEDIVNALQRLAREADDVVIATDYDREGE 108
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
I E E+ R VN + R RFS++ D E+ A + D + A A +ARQ +DL
Sbjct: 109 LIGKEAYELVREVNEQAPVNRVRFSSITDTEVRSAFADPDDIDFDLAAAGEARQIVDLMW 168
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GAS TRF ++ D +S G Q PTL +V++ EI+A + +++W +
Sbjct: 169 GASLTRFLSLSAGQMGED--------FISVGRVQSPTLKLIVDKEREIEAFDPDDYWELF 220
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVII---------YEMCVQEPTATVTKVRQQEKLKY 300
+ ++ T + D T A + ++ Q A V V ++ +
Sbjct: 221 ADLRKDQTTFEAQYFYEDPADGTEAERVWNEGDADAAFDALRQAGEAVVDSVSRRTRTDD 280
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PP P +T + RA+ S+ M +AEDLY AG+I+YPRT+ + + ++ E
Sbjct: 281 PPAPFNTTQF-IRAAGSLGYSAGRAMSIAEDLYTAGYITYPRTDNTVYPDDLDERDLL-E 338
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
+G A LLD +P SG + HPPIHPT ++ S+D + +YEL
Sbjct: 339 AFQQTVFGDDADSLLDQDR---LSPTSGDEETTDHPPIHPTTDFPDRNQLSEDEWAVYEL 395
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
VVR F A V+ PA A V + GE +G+ ++ Y VY + +P
Sbjct: 396 VVRRFFATVAAPAEWAHLRVTADADGESLKANGKRLVEAGYHAVYPYYDSSENHVPPVEE 455
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G T LD+ T+PP ++ L+ M+ IGT +T H+ I+KL DR Y D
Sbjct: 456 GDTLAITDARLDAKQTQPPRRYGQSRLIETMESMDIGTKSTRHNTIEKLYDRGYIENDPP 515
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
PT + EA+V +D + + S +E+DM ++ G + DV + +
Sbjct: 516 R---PTTLAEAVVEAAEDYADVVVSEEMTSQLEADMTAIADGETTLDDVTTESREMLDRV 572
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMV 658
F + + ++ G+ + + + + G C E ++L++SR G+ V
Sbjct: 573 FDELTASRAEI-------------GDHLRTSLKADKSLGPCPECGDTLLLRQSRTGSHFV 619
Query: 659 GCLAFPQCRNAVWLPGS 675
GC +P+C+ + LP +
Sbjct: 620 GCDGYPECQFTLPLPST 636
>gi|433638091|ref|YP_007283851.1| topoisomerase IA [Halovivax ruber XH-70]
gi|433289895|gb|AGB15718.1| topoisomerase IA [Halovivax ruber XH-70]
Length = 854
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 192/688 (27%), Positives = 331/688 (48%), Gaps = 50/688 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G ++ R +YE+ G C ++GH++
Sbjct: 25 LIITEKDNAARRIADILS---GESMQSTRENGVNVYEWG----GTRC----VGLSGHVVG 73
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL +RR + + + D DREGE
Sbjct: 74 VDFPPEYGDWRDVEPVELIDASVEKRPT--KENIVATLRLLSRRAEQVTIATDYDREGEL 131
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R V+ + +RR RFS++ + E+ +A + A A +ARQ IDL G
Sbjct: 132 IGKEAYEIVRDVDEDVPIRRVRFSSITENEVTRAFDQPESLDFDLAAAGEARQIIDLVWG 191
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
AS TRF ++ N +S G Q PTL +V+R EI+A + +++W +
Sbjct: 192 ASLTRFLSLSAGQLG--------NDFISVGRVQSPTLKLLVDREREIEAFDPDDYWELFA 243
Query: 249 NCSHKSEEGTATFS--WMRGH-------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+ +EG A + + R ++D + A ++E ATV V ++ +
Sbjct: 244 ELAKDEDEGDAFEAQYFYRDEDDNEAERVWDESIAESVFETLSSASEATVVDVNRRTRTD 303
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
PP P +T + RA+ S++ M +AEDLY AG+++YPRT+ + + ++
Sbjct: 304 TPPAPFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYMTYPRTDNTVYPDDLDPEALLD 362
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+ +GHP G A+ LL+ L G D HPPIHPT S D ++++E
Sbjct: 363 DFVGHPTLGESAEDLLETDDDLVATEGDEETTD--HPPIHPTGEIPARGEVSDDEWEIFE 420
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVVR F A ++ A V ++A +G+ ++ Y VY + + +P
Sbjct: 421 LVVRRFYATLADAARWEHLKVVADVADHSLKANGKRLVEPGYHAVYPYFNTSENFVPDVT 480
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ + ++ T+PP ++ L+ M++ G+GT +T H+ I+KL DR Y ++D
Sbjct: 481 EGETLALSDAEIEEKQTQPPRRYGQSRLIETMEEMGVGTKSTRHNIIEKLYDRGY-VEDD 539
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
R PT + A+V + E+ + + +E+DM ++ G S DV A + +
Sbjct: 540 PPR--PTRLAMAVVDAAEQFADEVVSEEMTAQLEADMDAIASGEASLDDVTAESREMLDE 597
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
F + + ++ + + R S +D++ + C C E ++++++SR G+ VG
Sbjct: 598 IFDELADSRDEIGDHL-----RKSLKDDKR-----LGPCPECGE-DLLVRRSRYGSYFVG 646
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
C +P C + LP S + + +TC+
Sbjct: 647 CDGYPDCEYTLQLP-STGKPHILDDTCD 673
>gi|448737373|ref|ZP_21719414.1| DNA topoisomerase I [Halococcus thailandensis JCM 13552]
gi|445803833|gb|EMA54109.1| DNA topoisomerase I [Halococcus thailandensis JCM 13552]
Length = 827
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 199/686 (29%), Positives = 331/686 (48%), Gaps = 50/686 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A ++A ILS +G E R+ N +Y++ G+ C ++GH++E
Sbjct: 3 LLITEKETAASNIATILS--EGSADVERRNGVN-VYKWG----GRRC----VGLSGHVVE 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF Y W +P +L A V E +++I +TL AR +++ D DREGE
Sbjct: 52 NDFPPEYANWRDVEPVELLDADVVVEPHESRENIVRTLRLLARDADGVIIATDYDREGEL 111
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ ++RARFS+ +RE+ +A NL D + A A +ARQEIDL G
Sbjct: 112 IGKEAADIVREVS-DAPIKRARFSSFAEREVREAFDNLDDLDYDLAAAGEARQEIDLVWG 170
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ K N +S G Q PTL +V+R +IQA + E +W +
Sbjct: 171 AALTRFLSLTAKQRG--------NDFISVGRVQSPTLKLIVDRERKIQAFDPETYWELFS 222
Query: 251 SHKSEEGTATFSWM-----RG--HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+ ++ T + RG L+D + A +Y+ + ATV +V ++ + PP
Sbjct: 223 DLRKDQTTFEVQYFDREAGRGTDRLWDESVAAEVYDALDEASAATVQEVSRRTRTDDPPS 282
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P++T + RA+ S++ M +AE+LY AG+I+YPRT+ + ++ +++
Sbjct: 283 PMNTTQY-IRAAGSLGYSAQRAMSLAEELYTAGYITYPRTDNTVYPDDLDIEELLEGFTN 341
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
H ++G A+ LL+ + P G + HPPIHPT S D ++YELVVR
Sbjct: 342 HREFGEDAEALLESEEIV---PTEGDEETTDHPPIHPTGELPSASELGDDEREIYELVVR 398
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F A V+ PA V I +G+ ++ Y VY + + +P G++
Sbjct: 399 RFFATVADPAEWEHLRVTAAIDEHHLKANGKRLVEPGYHAVYPYFNTSENHVPELDEGEE 458
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + T+PP ++ L+ M++ GIGT AT H+ I+KL DR Y D
Sbjct: 459 LPIEDVRSEEKETQPPRRRGQSRLIERMEQMGIGTKATRHNTIEKLYDRGYIESDPPR-- 516
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + EA+V + + + S +E+DM ++ G DV + + F
Sbjct: 517 -PTKLAEAVVEAAEQFADRVVSEEMTSQLETDMAAIADGETGLEDVTQESREMLSTVFDA 575
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCL 661
R + ++ GE + + + + G C + ++++++KSR G+ VGC
Sbjct: 576 LRDSREEI-------------GEHLRKSLKADKTLGPCPDCGADLLVRKSRHGSSFVGCD 622
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCN 687
+P C + LP S E + TC+
Sbjct: 623 GYPDCEFTLPLP-SAGEPLILDETCD 647
>gi|289582117|ref|YP_003480583.1| DNA topoisomerase [Natrialba magadii ATCC 43099]
gi|448282469|ref|ZP_21473755.1| DNA topoisomerase I [Natrialba magadii ATCC 43099]
gi|289531670|gb|ADD06021.1| DNA topoisomerase [Natrialba magadii ATCC 43099]
gi|445576011|gb|ELY30470.1| DNA topoisomerase I [Natrialba magadii ATCC 43099]
Length = 843
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 189/690 (27%), Positives = 324/690 (46%), Gaps = 64/690 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A + K K++I TL +R+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDASIEKTAT--KENIVATLRILSRKATRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDEEVPIRRVRFSSITENEVQDAFDEPDELDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ N +S G Q PTL +V+R EI+A + E++W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLMVDREREIEAFDPEDYWELVA 221
Query: 249 NCSHKSEEGTATFS----------------WMRGH-------LFDYTSAVIIYEMCVQEP 285
+ + SE A+ + + R +++ A ++E Q
Sbjct: 222 DVAKGSEAQRASETSSGDEPRESEAFEAQYFYRDEDGNEAERVWEEAVAEDVFETLSQRD 281
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
TATV V ++ + PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+
Sbjct: 282 TATVVDVNRRTRTDSPPAPFNTTQF-IRAASALGYSAKRAMSIAEDLYTAGYITYPRTDN 340
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS 405
+ + ++ + +GHP G A+ LL+ P G + HPPIHPT
Sbjct: 341 TVYPDDLDPEELLDDFVGHPTLGESAESLLEADE---IEPTEGDEETTDHPPIHPTGEIP 397
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
S D ++++ELVVR F A V++ A+ V +A +G+ + Y DVY
Sbjct: 398 SRGDVSDDEWEVFELVVRRFYATVAEAAIWEHLKVVAEVAAHRLKANGKRLDKAGYHDVY 457
Query: 466 RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
+ S +P G++ T + L+ T+PP ++ L+ M+ GIGT +T H+
Sbjct: 458 PYFSTTENYVPDVSEGEEITITDVELEDKQTQPPRRYGQSRLIETMEDMGIGTKSTRHET 517
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
I+KL DR Y D PT + A+V ++ + ++ + +E DM ++ G
Sbjct: 518 IQKLYDRGYIESDPPR---PTKLAMAVVEAAENYADRVVSEDMTAQLEQDMDAIASGEAG 574
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESN 645
DV + ++ F + + ++ + + R S +D++ + C C E +
Sbjct: 575 LEDVTNESREMLEEIFANLADSRDEIGDHL-----RKSLKDDKR-----LGPCPECGE-D 623
Query: 646 MVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
+++++SR G+ +GC +P C N + LP +
Sbjct: 624 LLVRRSRHGSYFIGCDGYPDCENTLPLPST 653
>gi|448337838|ref|ZP_21526911.1| DNA topoisomerase I [Natrinema pallidum DSM 3751]
gi|445624798|gb|ELY78171.1| DNA topoisomerase I [Natrinema pallidum DSM 3751]
Length = 843
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 191/690 (27%), Positives = 315/690 (45%), Gaps = 64/690 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R IYE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNIYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL ARR Q + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIGADVEKTAT--KENIVATLRLLARRAQRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRNVDEDVPIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TR+ ++ D +S G Q PTL +V+R EI+A + E++W I
Sbjct: 170 AALTRYLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIEAFDPEDYWEIFA 221
Query: 251 SHKSEEGTATFSWMRGH-------------------------LFDYTSAVIIYEMCVQEP 285
E G +++ A +YE +
Sbjct: 222 DLTKSEAQRASETSSGEEPRDDDTAFESQYFYRDEDDNEAERVWEEDIADEVYETLAERE 281
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
+ATV V ++ + PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+
Sbjct: 282 SATVVDVTRRTRTDTPPEPFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYITYPRTDN 340
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS 405
+ + ++ E + HP G A+ LL+ P G + HPPIHPT
Sbjct: 341 TVYPDDLDPEELLDEFVSHPSLGDSAESLLEADE---ITPTEGDEETTDHPPIHPTGEIP 397
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
S D +++YELVVR F A V+ AV V +G+ ++ Y DVY
Sbjct: 398 SRGDISDDEWEVYELVVRRFYATVADAAVWEHLKVVAETDDHRLKANGKRLVEPGYHDVY 457
Query: 466 RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
+ S +P G+ + + L+ T+PP ++ L+ M++ GIGT +T H+
Sbjct: 458 PYFSTTENYVPDVDEGETLALSDVELEDKQTQPPRRYGQSRLIETMEEMGIGTKSTRHNT 517
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
++KL DR Y D PT + A+V + + + + +E+DM ++ G +
Sbjct: 518 LEKLYDRGYIESDPPR---PTKLAMAVVDAAESYADRIVSEEMTAQLEADMDAIANGEAT 574
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESN 645
DV + ++ F + + ++ + + R S +D++ + C C E +
Sbjct: 575 LDDVTDESREMLEEIFENLADSREEIGDHL-----RKSLKDDKR-----LGPCPDCGE-D 623
Query: 646 MVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
+++++SR G+ +GC +P C N + LP +
Sbjct: 624 LLVRRSRHGSYFIGCDGYPDCENTLPLPST 653
>gi|448355410|ref|ZP_21544162.1| DNA topoisomerase I [Natrialba hulunbeirensis JCM 10989]
gi|445635563|gb|ELY88731.1| DNA topoisomerase I [Natrialba hulunbeirensis JCM 10989]
Length = 843
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 188/690 (27%), Positives = 321/690 (46%), Gaps = 64/690 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A + K K++I TL +R+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDASIEKTAT--KENIVATLRILSRKATRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDEEVPIRRVRFSSITENEVQDAFAEPDELDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ N +S G Q PTL +V+R EI+A + E++W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLMVDREREIEAFDPEDYWELVA 221
Query: 249 -----------------NCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEP 285
+ +SE A + + +++ A ++E Q
Sbjct: 222 DVAKGSEAQRASETSSGDEPRESEAFEAQYFYRDEDGNEAERVWEEAVAEDVFETLSQRD 281
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
TATV V ++ + PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+
Sbjct: 282 TATVVDVNRRTRTDSPPAPFNTTQF-IRAASALGYSAKRAMSIAEDLYTAGYITYPRTDN 340
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS 405
+ + ++ + +GHP G A+ LL+ P G + HPPIHPT
Sbjct: 341 TVYPDDLDPEELLDDFVGHPTLGESAESLLEADE---IEPTEGDEETTDHPPIHPTGEIP 397
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
S D ++++ELVVR F A V++ A+ V +A +G+ + Y DVY
Sbjct: 398 SRGDVSDDEWEVFELVVRRFYATVAEAAIWEHLKVVAEVADHRLKANGKRLDKAGYHDVY 457
Query: 466 RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
+ S +P G++ T + L+ T+PP ++ L+ M+ GIGT +T H+
Sbjct: 458 PYFSTTENYVPDVSEGEELTITDVELEDKQTQPPRRYGQSRLIETMEDMGIGTKSTRHET 517
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
I+KL DR Y D PT + A+V ++ + ++ + +E DM ++ G
Sbjct: 518 IQKLYDRGYIESDPPR---PTKLAMAVVEAAENYADRVVSEDMTAQLEQDMDAIASGEAG 574
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESN 645
DV + + F + + ++ + + R S +D++ + C C E +
Sbjct: 575 LEDVTDESREMLAEIFANLADSRDEIGDHL-----RKSLKDDKR-----LGPCPECGE-D 623
Query: 646 MVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
+++++SR G+ +GC +P C N + LP +
Sbjct: 624 LLVRRSRHGSYFIGCDGYPDCENTLPLPST 653
>gi|448681338|ref|ZP_21691471.1| DNA topoisomerase I [Haloarcula argentinensis DSM 12282]
gi|445767871|gb|EMA18964.1| DNA topoisomerase I [Haloarcula argentinensis DSM 12282]
Length = 827
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 191/690 (27%), Positives = 319/690 (46%), Gaps = 60/690 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS+ SR N + + + + + ++GH++
Sbjct: 3 LIITEKDNAARRIAEILSEGSA-----SASRQNGVNVYRWG------NTRVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF E Y W +P +L A V K +++I TL++ AR + D DREGE
Sbjct: 52 VDFPEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + + R RFS++ +RE+ A N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDVPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWEIFA 220
Query: 251 S-------------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+ + A W+ D + + + ATVT VR++ +
Sbjct: 221 DLQKNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTGVD------AATVTSVRRRTR 274
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
PP P +T AS S++ M +AE+LY G+I+YPRT+ + +
Sbjct: 275 TDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLEEDAL 333
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ E +G +G A+ LL+ G + HPPIHPT + S D +++
Sbjct: 334 LDEFVGAGHFGEDAETLLEQDD---ITATEGDEETTDHPPIHPTGEIPPKVDLSDDEWEI 390
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YELVVR F A V++ A V + G +G+ ++ Y +VY + S +P
Sbjct: 391 YELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVPD 450
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G++ + + +++ T+PP ++ L+ M+ G+GT +T H+ I+KL DR Y
Sbjct: 451 VEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIEG 510
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
D PT + A+V ++ + + + +E+DM ++ G + DV + +
Sbjct: 511 DPPR---PTTLAMAVVEAAEEFADHVVSDEMTAQLEADMTAIANGEATLDDVADESREML 567
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
K F + R + ++ E + ++ A + + C C E +M++++SR G+
Sbjct: 568 KRVFEELRDSREEIGEHL----------QESLKADKTLGPCPKCGE-DMLVRRSRQGSYF 616
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
VGC FP+CRN + LP S E V C
Sbjct: 617 VGCDGFPECRNTLPLP-STGEPQVLEEHCE 645
>gi|448374321|ref|ZP_21558206.1| DNA topoisomerase I [Halovivax asiaticus JCM 14624]
gi|445660998|gb|ELZ13793.1| DNA topoisomerase I [Halovivax asiaticus JCM 14624]
Length = 832
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 190/688 (27%), Positives = 329/688 (47%), Gaps = 50/688 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G ++ R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GESMQSTRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL ARR + + + D DREGE
Sbjct: 52 VDFPPEYGDWRDVEPVELIDASVEKRPT--KENIVATLRLLARRAEQVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R V+ + +RR RFS++ + E+ +A + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVRDVDEDVPIRRVRFSSITENEVTRAFDQPESLDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TRF ++ N +S G Q PTL +V+R EI+A + +++W +
Sbjct: 170 ASLTRFLSLSAGQLG--------NDFISVGRVQSPTLKLLVDREREIEAFDPDDYWELFA 221
Query: 251 SHKSEEGT-----ATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
++G A + + +++ + A ++E ATV V ++ +
Sbjct: 222 DLIKDDGDGDAFEAQYFYRDEDDNEAERVWEESVAESVFETLSSASEATVVDVNRRTRTD 281
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
PP P +T + RA+ S++ M +AEDLY AG+++YPRT+ + + ++
Sbjct: 282 TPPAPFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYMTYPRTDNTVYPDDLDPEALLD 340
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+ +GHP G A+ LL+ L G D HPPIHPT S D ++++E
Sbjct: 341 DFVGHPTLGESAEDLLETDDDLVATEGDEETTD--HPPIHPTGEIPARGEVSDDEWEIFE 398
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVVR F A ++ A V ++A +G+ ++ Y VY + + +P
Sbjct: 399 LVVRRFYATLADAARWEHLKVVADVADHSLKANGKRLVEPGYHAVYPYFNTSENFVPDVT 458
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ + ++ T+PP ++ L+ M++ G+GT +T H+ I+KL DR Y ++D
Sbjct: 459 EGETLTLSDAEIEEKQTQPPRRYGQSRLIETMEEMGVGTKSTRHNIIEKLYDRGY-VEDD 517
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
R PT + A+V + E+ + + +E+DM ++ G S DV A + +
Sbjct: 518 PPR--PTRLAMAVVDAAEQFADEVVSEEMTAQLEADMDAIASGEASLDDVTAESREMLDE 575
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
F + + ++ + + R S +D++ + C C E ++++++SR G+ VG
Sbjct: 576 IFDELADSRDEIGDHL-----RKSLKDDKR-----LGPCPECGE-DLLVRRSRYGSYFVG 624
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
C +P C + LP S + + +TC
Sbjct: 625 CDGYPDCEYTLQLP-STGKPHILDDTCE 651
>gi|448685228|ref|ZP_21693220.1| DNA topoisomerase I [Haloarcula japonica DSM 6131]
gi|445781839|gb|EMA32690.1| DNA topoisomerase I [Haloarcula japonica DSM 6131]
Length = 827
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 193/690 (27%), Positives = 318/690 (46%), Gaps = 60/690 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS+ SR N + + + + + ++GH++
Sbjct: 3 LIITEKDNAARRIAEILSEGSA-----SASRQNGVNVYRWG------NTRVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF E Y W +P +L A V K +++I TL++ AR + D DREGE
Sbjct: 52 VDFPEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ +RE+ A N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDAPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWEIFA 220
Query: 249 ----NCS-------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
N S + + A W+ A Y ATVT VR++ +
Sbjct: 221 DLQKNGSGFEAQYFYDDDGKEAERVWVED------DADEAYADLTSVDAATVTSVRRRTR 274
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
PP P +T AS S++ M +AE+LY G+I+YPRT+ + +
Sbjct: 275 TDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLEEDAL 333
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ E +G +G A++LL+ G + HPPIHPT ++ S D +++
Sbjct: 334 LDEFVGAGHFGEDAEKLLEQDD---ITATEGDEETTDHPPIHPTGEIPPKADLSDDEWEI 390
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YELVVR F A V++ A V + G +G+ ++ Y +VY + S +P
Sbjct: 391 YELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVPD 450
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G++ + + ++ T+PP ++ L+ M+ G+GT +T H+ I+KL DR Y
Sbjct: 451 VEEGEELAISEVRMEDKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIEG 510
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
D PT + A+V ++ + + + +E+DM ++ G + DV + +
Sbjct: 511 DPPR---PTTLAMAVVEAAEEFADHVVSDEMTAQLEADMTAIANGEATLDDVADESREML 567
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
K F + R + ++ E + ++ A + + C C E +M++++SR G+
Sbjct: 568 KRVFDELRDSREEIGEHL----------QESLKADKTLGPCPKCGE-DMLVRRSRQGSYF 616
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
VGC FP+CRN + L S E V C
Sbjct: 617 VGCDGFPECRNTLPLT-STGEPQVLEEHCE 645
>gi|448328025|ref|ZP_21517341.1| DNA topoisomerase I [Natrinema versiforme JCM 10478]
gi|445616620|gb|ELY70240.1| DNA topoisomerase I [Natrinema versiforme JCM 10478]
Length = 826
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 188/673 (27%), Positives = 321/673 (47%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL +RR + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRLLSRRANRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRNVDEDVPIRRVRFSSITENEVQSAFDEPDELDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TR+ ++ N +S G Q PTL +V+R EIQA + E++W +
Sbjct: 170 AALTRYLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPEDYWELFA 221
Query: 251 SHKSEE---GTATFSWMRG-----HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ +E GT F +++ +A +YE ATV V ++ + PP
Sbjct: 222 DLEKDEMSFGTQYFYRDEDDNEAERIWEEATADEVYETLADRDAATVVDVNRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ E +
Sbjct: 282 EPFNTTQF-IRAAGAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEDLLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GHP G A+ LL+ + P G + HPPIHPT S D ++++ELVV
Sbjct: 341 GHPSLGESAESLLEADDIV---PTEGDEETTDHPPIHPTGEIPTRGDVSDDEWEVFELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ A V + ++G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFYATVADAAEWEHLKVVAEVEDHRLKSNGKRLVEPGYHDVYPYFSTTENFVPDVDEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + L+ T+PP ++ L+ M++ GIGT +T H+ ++KL DR Y D
Sbjct: 458 ELGLSGVELEDKQTQPPRRYGQSRLIETMEEMGIGTKSTRHNTLEKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + + + +E+DM ++ G + DV + ++ F
Sbjct: 517 --PTKLAMAVVDAAENYADRIVSEEMTAQLEADMDAIANGEATLDDVTDESREMLEEIFE 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ C C E ++++++SR G+ +GC
Sbjct: 575 NLAESRDEIGDHL-----RKSLKDDKRLG-----PCPECGE-DLLVRRSRHGSYFIGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C N + LP +
Sbjct: 624 YPDCENTLPLPST 636
>gi|344212444|ref|YP_004796764.1| DNA topoisomerase I [Haloarcula hispanica ATCC 33960]
gi|343783799|gb|AEM57776.1| DNA topoisomerase I [Haloarcula hispanica ATCC 33960]
Length = 841
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 191/686 (27%), Positives = 319/686 (46%), Gaps = 52/686 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS+ SR N + + + + + ++GH++
Sbjct: 3 LIITEKDNAARRIAEILSEGSA-----SASRQNGVNVYRWG------NTRVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF E Y W +P +L A V K +++I TL++ AR + D DREGE
Sbjct: 52 VDFPEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ +RE+ A N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDAPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWEIFA 220
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIY---------EMCVQEPTATVTKVRQQEKLKYP 301
+ + + F + D A ++ ATVT VR++ + P
Sbjct: 221 DLQ--KNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTGVNAATVTSVRRRTRTDSP 278
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T AS S++ M +AE+LY G+I+YPRT+ + ++ E
Sbjct: 279 PTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLEEDALLDEF 337
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G +G A++LL+ G + HPPIHPT + S D +++YELV
Sbjct: 338 VGAGHFGEDAEKLLEQDD---ITATEGDEETTDHPPIHPTGEIPPKVDLSDDEWEIYELV 394
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V++ A V + G +G+ ++ Y +VY + S +P G
Sbjct: 395 VRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVPDVEEG 454
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ + + +++ T+PP ++ L+ M+ G+GT +T H+ I+KL DR Y D
Sbjct: 455 EELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIEGDPPR 514
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT + A+V ++ + + + +E+DM ++ G + DV + +K F
Sbjct: 515 ---PTTLAMAVVEAAEEFADHVVSDEMTAQLEADMTAIANGEATLDDVADESREMLKRVF 571
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
+ R + ++ E + ++ A + + C C E +M++++SR G+ VGC
Sbjct: 572 DELRDSREEIGEHL----------QESLKADKTLGPCPKCGE-DMLVRRSRQGSYFVGCD 620
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCN 687
FP+CRN + LP S E V C
Sbjct: 621 GFPECRNTLPLP-STGEPQVLEEHCE 645
>gi|448671391|ref|ZP_21687330.1| DNA topoisomerase I [Haloarcula amylolytica JCM 13557]
gi|445765994|gb|EMA17131.1| DNA topoisomerase I [Haloarcula amylolytica JCM 13557]
Length = 838
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 193/690 (27%), Positives = 322/690 (46%), Gaps = 60/690 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS+ SR N + + + + + ++GH++
Sbjct: 3 LIITEKDNAARRIAEILSEGSA-----SASRQNGVNVYRWG------NTRVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF E Y W +P +L A V K +++I TL++ AR + D DREGE
Sbjct: 52 VDFPEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ +RE+ A N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDAPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWEIFA 220
Query: 249 ----NCS-------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
N S + + A W+ D + + + ATVT VR++ +
Sbjct: 221 DLQKNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTGVD------AATVTSVRRRTR 274
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
PP P +T AS S++ M +AE+LY G+I+YPRT+ + +
Sbjct: 275 TDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLEEDAL 333
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ E +G +G A++LL+ G + HPPIHPT + S D +++
Sbjct: 334 LDEFVGAGHFGEDAEKLLEQDD---ITATEGDEETTDHPPIHPTGEIPPKVDLSDDEWEI 390
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YELVVR F A V++ A V + G +G+ ++ Y +VY + S +P
Sbjct: 391 YELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVPD 450
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G++ + + +++ T+PP ++ L+ M+ G+GT +T H+ I+KL DR Y
Sbjct: 451 VEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIEG 510
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
D PT + A+V ++ + + + +E+DM ++ G +S V + +
Sbjct: 511 DPPR---PTTLAMAVVEAAEEFADHVVSDEMTARLEADMTAIANGEESLDTVADESREML 567
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
K F + R + ++ E + ++ A + + C C E +M++++SR G+
Sbjct: 568 KRVFDELRDSREEIGEHL----------QESLKADKTLGPCPKCGE-DMLVRRSRQGSYF 616
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
VGC FP+CRN + LP S E V + C
Sbjct: 617 VGCDGFPECRNTLPLP-STGEPQVLEDHCE 645
>gi|448725243|ref|ZP_21707711.1| DNA topoisomerase I [Halococcus morrhuae DSM 1307]
gi|445799346|gb|EMA49726.1| DNA topoisomerase I [Halococcus morrhuae DSM 1307]
Length = 827
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 195/686 (28%), Positives = 323/686 (47%), Gaps = 50/686 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A ++A ILS +G E R+ N +Y++ G+ C ++GH++E
Sbjct: 3 LLITEKETAASNIAEILS--EGSADVERRNGVN-VYKWG----GRRC----VGLSGHVVE 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF Y W +P +L A V E +++I +TL AR +++ D DREGE
Sbjct: 52 NDFPPEYANWRDVEPVELLDADVVVEPHESRENIVRTLRLLARDANGVIIATDYDREGEL 111
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ ++RARFS+ +RE+ +A NL D + A A +ARQEIDL G
Sbjct: 112 IGKEAADIVREVS-DAPIKRARFSSFAEREVREAFHNLDDLDYDLAAAGEARQEIDLVWG 170
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ K N +S G Q PTL +V+R +IQ + E +W +
Sbjct: 171 AALTRFLSLTAKQRG--------NDFISVGRVQSPTLKLIVDRERKIQKFDPETYWELFS 222
Query: 251 SHKSEEGTATFSWM-----RG--HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+E T + RG L+D + A +Y+ + ATV V ++ + PP+
Sbjct: 223 DLLKDETTFEVQYFDREDGRGTDRLWDESVAAEVYDALGETSAATVQDVSRRTRTDDPPH 282
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T + RA+ S++ M +AE+LY AG+I+YPRT+ + ++ +++
Sbjct: 283 PFNTTQY-IRAAGSLGYSAQRAMSLAEELYTAGYITYPRTDNTVYPDDLDIEELLEGFTN 341
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
H ++G + G + HPPIHPT S D ++YELVVR
Sbjct: 342 HREFG---DDAEALLEAEELSATEGDEETTDHPPIHPTGELPSASELGDDEREIYELVVR 398
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F A V+ PA V I +G+ ++ Y VY + + +P G++
Sbjct: 399 RFFATVADPAKWEHLRVTAAIDEHHLKANGKRLVEPGYHAVYPYFNTSENHVPELDEGEE 458
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + T+PP ++ L+ M+ GIGT AT H+ I+KL DR Y D
Sbjct: 459 LPIEDVRSEEKETQPPRRRGQSRLIERMETMGIGTKATRHNTIEKLYDRGYIESDPPR-- 516
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + EA+V + + + S +E+DM ++ G + DV + ++ F
Sbjct: 517 -PTKLAEAVVEAAEQYADRVVSEEMTSQLETDMAAIADGETALDDVTQESREMLETVFDT 575
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCL 661
R + ++ GE + + + + G C + ++++++KSR G+ VGC
Sbjct: 576 LRDSREEV-------------GEHLRKSLKADKTLGPCPDCGADLLVRKSRHGSSFVGCD 622
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCN 687
+P C + LP S E + TC+
Sbjct: 623 GYPDCEFTLPLP-SAGEPLILDETCD 647
>gi|294880144|ref|XP_002768906.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
gi|239871904|gb|EER01624.1| prokaryotic dna topoisomerase, putative [Perkinsus marinus ATCC
50983]
Length = 605
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 151/342 (44%), Positives = 190/342 (55%), Gaps = 38/342 (11%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLM 61
A GGR I LNVAEK SVA+ + +L G I G P M++
Sbjct: 8 AAGGRRIRALNVAEKNSVAREMCRVLG---GGVIPNG---------------NPPVMMVV 49
Query: 62 TSVTGHLMELDFDERYR-KWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
T+V GHLM LDF++ YR +W + DP LY+AP+ K V D + L AR C WLVL
Sbjct: 50 TAVRGHLMGLDFEQEYRGRWDTVDPETLYNAPLVKSVASDMGPVAGNLRRLARTCDWLVL 109
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
WLDCDREGE IA+EVIE+ R N L + RA FSAL ++ +A NL PN A AVD
Sbjct: 110 WLDCDREGEAIAYEVIEIAREANARLNVYRANFSALTHADLTRACLNLARPNPHLAAAVD 169
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNL-----VLSYGPCQFPTLGFVVERYW 235
ARQEIDLRIGASFTRF T+ K R L +LSYGPCQFPTLGFVV+R+
Sbjct: 170 ARQEIDLRIGASFTRFLTLRYK----------RRLPLLEGILSYGPCQFPTLGFVVQRWL 219
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT----ATVTK 291
+ E FWTI C+ + W R LFD+ + ++Y+ C+Q VT
Sbjct: 220 LQRNFIREPFWTIKCTVRVPMVEVKLLWGRHRLFDHLATTLLYDRCLQHVRESGGGVVTH 279
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
V K ++ P PLST+E K AS R+ S M++AE+ Y
Sbjct: 280 VSHNPKSRWRPLPLSTVEFAKLASSKLRIDSRQAMRIAEEFY 321
>gi|448319986|ref|ZP_21509474.1| DNA topoisomerase I [Natronococcus amylolyticus DSM 10524]
gi|445606392|gb|ELY60296.1| DNA topoisomerase I [Natronococcus amylolyticus DSM 10524]
Length = 827
Score = 261 bits (668), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 192/674 (28%), Positives = 317/674 (47%), Gaps = 48/674 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A + K K++I TL +RR + + + D DREGE
Sbjct: 52 VDFPAEYSDWRDVEPVELIDASIEKTAT--KENIVATLRILSRRAERVAIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDEDVPIRRVRFSSITENEVQNAFNEPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N +S G Q PTL +V+R EIQA + E +W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPETYWELFA 221
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVI--------IYEMCVQEPTATVTKVRQQEKLKYPP 302
+ E T + D + + +YE ATV V ++ + PP
Sbjct: 222 DLRQAETTFEAQYFYRDEDDNEAERVWAEARADEVYETLSGRDAATVVDVNRRTRTDAPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + +++E +
Sbjct: 282 APFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLEEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFSSGESRWSQDHYKLYELV 421
GH G A LL+ A R P G + HPPIHPT + S S D +++YELV
Sbjct: 341 GHSTLGESADSLLE--ADEIR-PTEGDEETTDHPPIHPTGEIPSRGGDVSDDEWEIYELV 397
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V+ PA V + +G+ ++ Y DVY + + +P G
Sbjct: 398 VRRFYATVADPAEWEHLKVVAEVDDARLKANGKRLVEPGYHDVYPYFNTTENYVPDVETG 457
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ + L+ T+PP ++ L+ M+ G+GT +T H+ ++KL DR Y D
Sbjct: 458 EELSIEAVELEEKETQPPRRYGQSRLIETMEDLGLGTKSTRHNTLEKLYDRGYIESDPPR 517
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT + A+V ++ + + + +E+DM ++ G DV + ++ F
Sbjct: 518 ---PTKLAMAVVDAAENYADRVVSEGMTAQLEADMDAIASGEADLEDVTDESREMLEEIF 574
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
A L + E +G R S +D++ + C C E ++++++SR G+ +GC
Sbjct: 575 --ANLADSR--EEIGDHL-RKSLKDDKR-----LGPCPECGE-DLLVRQSRHGSYFIGCD 623
Query: 662 AFPQCRNAVWLPGS 675
+P C N + LP +
Sbjct: 624 GYPDCENTLPLPST 637
>gi|448305271|ref|ZP_21495203.1| DNA topoisomerase I [Natronorubrum sulfidifaciens JCM 14089]
gi|445589118|gb|ELY43354.1| DNA topoisomerase I [Natronorubrum sulfidifaciens JCM 14089]
Length = 828
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 193/687 (28%), Positives = 327/687 (47%), Gaps = 50/687 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +PA+L A V K K++I TL AR+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPAELIDADVEKTAT--KENIVATLRILARKATQVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + ++R RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVRDVNEDVPIQRVRFSSITENEVKSAFDEPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TRF ++ N +S G Q PTL +V+R EI+A + E +W +
Sbjct: 170 ASLTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIEAFDPESYWELFA 221
Query: 251 SHKSEEGTATFS---WMRGH-------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+ ++ T F + R +++ A +YE +ATV V ++ +
Sbjct: 222 DLEKDDDTDAFEAQYFYRDEDDNEAERVWEEAVADEVYETLSSRDSATVVDVTRRTRTDT 281
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PP P +T + RA+ +++ M +AE+LY AG+I+YPRT+ + + ++ +
Sbjct: 282 PPTPFNTTQF-IRAASAIGYTAKRAMSIAEELYTAGYITYPRTDNTVYPDDLDPEDLLDD 340
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
+GH G A+ LL+ +P G + HPPIHPT S D ++++EL
Sbjct: 341 FVGHSTLGESAESLLEADE---ISPTEGDEETTDHPPIHPTGEIPTRGDVSDDEWEIFEL 397
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
VVR F A V+ AV V +A +G+ ++ Y DVY + S +P
Sbjct: 398 VVRRFFATVADAAVWEHLKVVAEVADYRLKANGKRLVEPGYHDVYPYFSTTENFVPDVDE 457
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G++ + + L+ T+PP ++ L+ M+ G+GT +T HD ++KL DR Y D
Sbjct: 458 GEKLSLSDVELEEKETQPPRRYGQSRLIETMEDLGVGTKSTRHDILEKLYDRGYVESDPP 517
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
PT + A+V ++ + + + +E+DM ++ G+ + DV + ++
Sbjct: 518 R---PTRLAMAVVEAAEEYADRVVSEGMTAQLEADMDAIAHGDATLEDVTDESREMLEEI 574
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
F A L + E +G R S +D++ + C C E ++++++SR G+ +GC
Sbjct: 575 F--ANLADSR--EDIGDHL-RKSLKDDKR-----LGPCPECGE-DLLVRRSRHGSHFIGC 623
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+P C + LP S + + + C+
Sbjct: 624 DGYPDCEYTLPLP-STGKPLIMESACD 649
>gi|324511395|gb|ADY44747.1| DNA topoisomerase 3 [Ascaris suum]
Length = 469
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 186/296 (62%), Gaps = 5/296 (1%)
Query: 320 MSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAA 379
MS++ M VAE LY GFISYPRTET+ F S +L+ ++++Q+ + +WG +AQ +L+ A
Sbjct: 1 MSAKDAMAVAEKLYSKGFISYPRTETNKFPSNLDLNPLIEQQVANAEWGEFAQEVLNRGA 60
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETI 439
NP +G D+AHPPIHP KF+ S + +YELVVRHFLACVS A G ET
Sbjct: 61 ----NPRNGTKSDEAHPPIHPLKFAL-PSELVGYEWSIYELVVRHFLACVSIDARGQETK 115
Query: 440 VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPP 499
V+I + E F+ +G V+ YL VY++E WG +P Y G+ +T+ G T+PP
Sbjct: 116 VQIKMGDESFTATGLVVEELGYLKVYKYEKWGDKTLPQYREGEVLHNCAVTMSEGHTQPP 175
Query: 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
PLLSEADL++ MDK GIGTDAT +HI+ + R YA +A RF P +G ALV GYD M
Sbjct: 176 PLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNAEKRFVPGYLGLALVDGYDRM 235
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAM 615
GY + KP++R+ +ES +K + +G ++K +VLA + + + F +K L A
Sbjct: 236 GYAMSKPHMRADLESQLKLICLGQRTKEEVLAEQIARYRRIFEQTEMKVTMLSNAF 291
>gi|448382895|ref|ZP_21562324.1| DNA topoisomerase I [Haloterrigena thermotolerans DSM 11522]
gi|445660075|gb|ELZ12872.1| DNA topoisomerase I [Haloterrigena thermotolerans DSM 11522]
Length = 843
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 188/690 (27%), Positives = 316/690 (45%), Gaps = 64/690 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL RR + + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDADVEKTAT--KENIVATLRLLTRRAERVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ QA D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDEDVPIRRVRFSSITENEVQQAFDEPDDLDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EI+A + E++W I
Sbjct: 170 AALTRFLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIEAFDPEDYWEIFA 221
Query: 251 SHKSEEGTATFSWMRGH-------------------------LFDYTSAVIIYEMCVQEP 285
+ E G +++ A +YE
Sbjct: 222 DLRKSEAQRASETSSGEEPRDDDTAFESQYFYRDEDGNEAERVWEEEIADEVYETLSDRE 281
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
+ATV V ++ + PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+
Sbjct: 282 SATVVDVNRRTRTDTPPEPFNTTQF-IRAAGAIGYSAKRAMSIAEDLYTAGYITYPRTDN 340
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS 405
+ + ++ E GH G A+ LL+ P G + HPPIHPT
Sbjct: 341 TVYPDDLDPEELLDEFTGHSTLGDSAESLLEADE---ITPTEGDEETTDHPPIHPTGEIP 397
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
S D ++++ELVVR F A V+ A V ++ +G+ ++ Y DVY
Sbjct: 398 SRGDVSDDEWEIFELVVRRFYATVADAAEWEHLKVVADVDDYRLKANGKRLVEPGYHDVY 457
Query: 466 RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
+ S +P G++ + + L++ T+PP ++ L+ M+ GIGT +T H+
Sbjct: 458 PYFSTTENFVPDVDEGEELALSDVELEAKQTQPPRRYGQSRLIETMEDMGIGTKSTRHNT 517
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
++KL DR Y D PT + A+V + + + + +E+DM ++ G +
Sbjct: 518 LEKLYDRGYIESDPPR---PTKLAMAVVDAAESYADRVVSEEMTAQLEADMDAIANGEAT 574
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESN 645
DV + ++ F + + ++ + + R S +D++ + C C E +
Sbjct: 575 LDDVTDESREMLEEIFENLAESREEIGDHL-----RKSLKDDKR-----LGPCPECGE-D 623
Query: 646 MVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
+++++SR G+ +GC +P C N + LP +
Sbjct: 624 LLVRRSRHGSYFIGCDGYPDCENTLPLPST 653
>gi|448630882|ref|ZP_21673337.1| DNA topoisomerase I [Haloarcula vallismortis ATCC 29715]
gi|445755256|gb|EMA06646.1| DNA topoisomerase I [Haloarcula vallismortis ATCC 29715]
Length = 827
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 192/690 (27%), Positives = 319/690 (46%), Gaps = 60/690 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS EG + N+ N G + ++GH++
Sbjct: 3 LIITEKDNAARRIAEILS--------EGGASANRQNGVNVYRWGD---TRVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF + Y W +P +L A V K +++I TL++ AR + D DREGE
Sbjct: 52 VDFPKEYNDWRDVEPVELIDADVTKEPT--QENIVATLKQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ +RE+ A N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDAPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWEIFA 220
Query: 251 S-------------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+ + A W+ D + + + ATVT VR++ +
Sbjct: 221 DLQKNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTSVD------AATVTSVRRRTR 274
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
PP P +T AS S++ M +AE+LY G+I+YPRT+ + +
Sbjct: 275 TDSPPTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLEEDAL 333
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ E +G +G A+ LL+ A G + HPPIHPT + S D +++
Sbjct: 334 LDEFVGAGHFGEDAEALLEQAD---ITATEGDEETTDHPPIHPTGEIPPKVDLSDDEWEI 390
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YELVVR F A V++ A V + G +G+ ++ Y +VY + S +P
Sbjct: 391 YELVVRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVPD 450
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G++ + + +++ T+PP ++ L+ M+ G+GT +T H+ I+KL DR Y
Sbjct: 451 VEEGEELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGTKSTRHNSIEKLYDRGYIEG 510
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
D PT + A+V ++ + + + +E+DM ++ G + +V + +
Sbjct: 511 DPPR---PTTLAMAVVEAAEEFADHVVSDEMTAQLEADMTAIANGEATLDEVADESREML 567
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
K F + R + ++ E + ++ A + + C C E +M++++SR G+
Sbjct: 568 KRVFDELRDSREEIGEHL----------QESLKADKTLGPCPKCGE-DMLVRRSRQGSYF 616
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
VGC FP+CRN + LP S E V + C
Sbjct: 617 VGCDGFPECRNTLPLP-STGEPQVLEDHCE 645
>gi|433592040|ref|YP_007281536.1| topoisomerase IA [Natrinema pellirubrum DSM 15624]
gi|448334373|ref|ZP_21523551.1| DNA topoisomerase I [Natrinema pellirubrum DSM 15624]
gi|433306820|gb|AGB32632.1| topoisomerase IA [Natrinema pellirubrum DSM 15624]
gi|445620259|gb|ELY73765.1| DNA topoisomerase I [Natrinema pellirubrum DSM 15624]
Length = 843
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 186/690 (26%), Positives = 317/690 (45%), Gaps = 64/690 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL RR + + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDADVEKTAT--KENIVATLRLLTRRAERVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A D + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDEDVPIRRVRFSSITENEVQNAFDEPDDLDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EI+A + E++W +
Sbjct: 170 AALTRFLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIEAFDPEDYWELFA 221
Query: 251 SHKSEEGTATFSWMRGH-------------------------LFDYTSAVIIYEMCVQEP 285
+ E G +++ +A +YE
Sbjct: 222 DLRKSEAQRASETSSGEEPRDDDTSFESQYFYRDEDGNEAERVWEEETADEVYETLADRE 281
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
+ATV V ++ + PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+
Sbjct: 282 SATVVDVNRRTRTDTPPEPFNTTQF-IRAAGAIGYSAKRAMSIAEDLYTAGYITYPRTDN 340
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS 405
+ + ++ E GH G A+ LL+ P G + HPPIHPT
Sbjct: 341 TVYPDDLDPEELLDEFTGHSTLGDSAESLLEADE---ITPTEGDEETTDHPPIHPTGEIP 397
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
S D ++++ELVVR F A V+ A V ++ +G+ ++ Y DVY
Sbjct: 398 SRGDVSDDEWEIFELVVRRFYATVADAAEWEHLKVVADVDDYRLKANGKRLVEPGYHDVY 457
Query: 466 RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
+ S +P G++ + + L++ T+PP ++ L+ M+ GIGT +T H+
Sbjct: 458 PYFSTTENFVPDVDEGEELALSDVELEAKQTQPPRRYGQSRLIETMEGMGIGTKSTRHNT 517
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
++KL DR Y D PT + A+V ++ + + + +E+DM ++ G +
Sbjct: 518 LEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRVVSEEMTAQLEADMDAIANGEAT 574
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESN 645
DV + ++ F + + ++ + + R S +D++ + C C E +
Sbjct: 575 LDDVTDESREMLEEIFENLAESREEIGDHL-----RKSLKDDKR-----LGPCPECGE-D 623
Query: 646 MVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
+++++SR G+ +GC +P C N + LP +
Sbjct: 624 LLVRRSRHGSYFIGCDGYPDCENTLPLPST 653
>gi|435845938|ref|YP_007308188.1| DNA topoisomerase I [Natronococcus occultus SP4]
gi|433672206|gb|AGB36398.1| DNA topoisomerase I [Natronococcus occultus SP4]
Length = 842
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 211/771 (27%), Positives = 347/771 (45%), Gaps = 67/771 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS RE +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILSGGSYDSTRENGV---NVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A + K K++I TL ARR + + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDADIEKTAT--KENIVATLRILARRAERVAIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDEDVPIRRVRFSSITENEVKNAFDEPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N +S G Q PTL +V+R EIQA + E +W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPETYWELFA 221
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVI--------IYEMCVQEPTATVTKVRQQEKLKYPP 302
+ E T + D + + +YE ATV V ++ + PP
Sbjct: 222 DLRQAETTFEAQYFYRDEDDNEAERVWKEARADEVYETLSGRNAATVVDVNRRTRTDAPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + +++E +
Sbjct: 282 APFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLEEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFSSGESRWSQDHYKLYELV 421
GH G A LL+ A R G + HPPIHPT + + S D +++YELV
Sbjct: 341 GHSTLGDAADSLLE--ADEIRAT-EGDEETTDHPPIHPTGEIPTRGGDVSDDEWEIYELV 397
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V+ PA V + +G+ ++ Y DVY + + +P G
Sbjct: 398 VRRFYATVADPAKWEHLKVVAEVDDVRLKANGKRLVEPGYHDVYPYFNTTENYVPDVETG 457
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ + L+ T+PP ++ L+ M+ G+GT +T H+ I+KL DR Y D
Sbjct: 458 EELSIEDVELEEKETQPPRRYGQSRLIETMEDLGLGTKSTRHNTIEKLYDRGYIESDPPR 517
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT + A+V + + + + +E DM ++ G DV + ++ F
Sbjct: 518 ---PTKLAMAVVDAAESYADRVVSEEMTAQLEQDMDAIASGEAGLEDVTDESREMLEEIF 574
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
A L + + E +G R S +D++ + C C E ++++++SR G+ +GC
Sbjct: 575 --ANLAESR--EEIGDHL-RKSLKDDKR-----LGPCPECGE-DLLVRQSRHGSYFIGCD 623
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLG---CI 718
+P C N + LP S + + C+ V ++ + P + G +
Sbjct: 624 GYPDCENTLPLP-STGKPLIMDGECDEHGLNEVKMLAGRQTFVHGCPLCTADEAGEGEIL 682
Query: 719 GGCDETLRQLIEICGTGSRIP-ARGRGPTASSNNGQ------QSNHRQRAC 762
G C + CG G+ P +RG G + +G+ QS R C
Sbjct: 683 GDCPD--------CGEGATSPTSRGEGGETAEADGELVIKTLQSGSRLVGC 725
>gi|449664549|ref|XP_004205945.1| PREDICTED: DNA topoisomerase 3-alpha-like [Hydra magnipapillata]
Length = 277
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 174/245 (71%), Gaps = 4/245 (1%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
G ++VLNVAEK AK ++ I+S + R REG S++NKIYEF Y I C+M+MTS
Sbjct: 5 GEDGMHVLNVAEKNDAAKCLSQIMSNGRSNR-REGFSKFNKIYEFEYKIFNCNCNMIMTS 63
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V+GHL++LDF Y KW+ C P L+ AP+ + VP++ KDI+KTLE E R+CQ L++W D
Sbjct: 64 VSGHLIDLDFGGGYNKWNQCAPVALFEAPICRFVPDNFKDIQKTLEREVRKCQALIIWTD 123
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
DREGENI FE+IEVC+ ++ + RA+FS + R +HQA +NLV P++ ++AV+ R+
Sbjct: 124 GDREGENIGFEIIEVCQKAKSNIDVYRAKFSEITSRAVHQACRNLVAPDKNVSNAVEVRR 183
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIGASFTRFQTM L+ + D ++SYG CQFPTLGFVVERY +++ SE
Sbjct: 184 ELDLRIGASFTRFQTMRLQKRFPTVLADQ---LISYGSCQFPTLGFVVERYKQVKEFLSE 240
Query: 244 EFWTI 248
EF+ I
Sbjct: 241 EFYKI 245
>gi|448457005|ref|ZP_21595579.1| DNA topoisomerase I [Halorubrum lipolyticum DSM 21995]
gi|445811092|gb|EMA61102.1| DNA topoisomerase I [Halorubrum lipolyticum DSM 21995]
Length = 865
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 201/719 (27%), Positives = 324/719 (45%), Gaps = 80/719 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATT-----ERQNDVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L + AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKEPTQEG--IVAALRKLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ D E+++A N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDAPIDRVRFSSITDNEVNEAFANPDELDFDLAAAGEARQVIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPEAYWELYG 225
Query: 251 SHKSEEGT---ATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+ G A + ++ ++D A ++ E A V VR++ + P
Sbjct: 226 NLTKSGGDPFEARYFYLNDDGNEAERVWDGDVAEVLTEALAAAGEAVVDDVRRRTRTDEP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLDPRELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A+ LLD A P G + HPPIHPT S S+D +++YEL+
Sbjct: 345 SAASTFGKDAKSLLD--ADREIEPTEGDEETTDHPPIHPTGELPSASDLSEDEWEVYELI 402
Query: 422 VRHFLACVSQPAV------------GAETIVE--------------------INIAGEVF 449
VR FLA ++PA A I E + G
Sbjct: 403 VRRFLATCAEPATWERLRVVALANGEATAIAERADGLAALRNPDEASGPGDLVADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ T D+ T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHDVYPYRSSDERIVPDVAVGETLALTDRRTDAKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K G+GT AT H ++KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRGVGTKATRHRTLEKLYDRNYIESDPPR---PTRLAEAVVEAAEEFAQHVVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM+ ++ G K +V + + F D + EA+G ++
Sbjct: 580 AQLERDMQAIAAGEKGYDEVTEASRELLDRVFDDLTESR----EAVGDHLQK------SL 629
Query: 630 AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
A + + C C E +++++KSR G+ VGC +P C + + LP S + + TC
Sbjct: 630 KADKTLGPCPECGE-DLLVRKSRQGSYFVGCDGYPDCEHTLPLP-STGKPLILDETCED 686
>gi|340505685|gb|EGR31996.1| hypothetical protein IMG5_098220 [Ichthyophthirius multifiliis]
Length = 482
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 200/319 (62%), Gaps = 16/319 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
N++NVAEKPSVAK V ILSK + I + S++N IY+FNY + QP +ML TSVTGH+
Sbjct: 6 NIINVAEKPSVAKEVTKILSKGRHSNI-QSESKFNPIYKFNYQLYQQPVNMLFTSVTGHI 64
Query: 69 MELDFDERYRKWHSCDPADLY--HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
++ FD++++ W +P L + + + + EDKK I++ L+ +R L+LWLDCDR
Sbjct: 65 IQTKFDDKFKNWTQVNPQILLDPNTEILRFIAEDKKKIEENLKIISRDADTLILWLDCDR 124
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE IA+EVI++C+++N +L ++RA+FS+L + I++A+ NL +P + DAV AR EID
Sbjct: 125 EGEAIAYEVIDICQSINRNLQIKRAQFSSLDYQNINRAINNLREPKKELNDAVQARIEID 184
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIGA+FTRFQT+ L+N S+ + ++SYGPCQFPTLGFVVERY +IQ + E+FW
Sbjct: 185 LRIGAAFTRFQTINLQN-KFQSLKQSKE-IISYGPCQFPTLGFVVERYNQIQLFKEEKFW 242
Query: 247 TINCSHKSEEGTATF----SWMRGHLFDYTSAVIIYEMCVQEPT-------ATVTKVRQQ 295
I S EG + W R L+D A + Y C + V K+ ++
Sbjct: 243 YIQGSFTWNEGQQQYICDLKWERVRLYDQEVASLFYIQCTHDERNQFNPKGIVVKKIEKE 302
Query: 296 EKLKYPPYPLSTIELEKRA 314
K K + L I+ K A
Sbjct: 303 TKNKNLIHQLQLIQQNKVA 321
>gi|448467207|ref|ZP_21599409.1| DNA topoisomerase I [Halorubrum kocurii JCM 14978]
gi|445812864|gb|EMA62851.1| DNA topoisomerase I [Halorubrum kocurii JCM 14978]
Length = 865
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 204/719 (28%), Positives = 325/719 (45%), Gaps = 80/719 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS RE N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATAERE-----NDVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L + AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKEPTQEG--IVAALRKLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ D E+ +A N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDAPIDRVRFSSITDNEVQKAFANPDELDFDLAAAGEARQVIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPESYWELYG 225
Query: 251 SHKSEEGT---ATFSWMRGH------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+ G A + ++ ++D A ++ E A V VR++ + P
Sbjct: 226 NLTKSGGDPFEARYFYLNDEGNEAERVWDGDVAEVLTEALDAADEAVVDDVRRRTRTDEP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLDPRELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A+RLLD A P G + HPP+HPT S S+D +++YEL+
Sbjct: 345 SVASTFGADAKRLLD--ADREIEPTEGDEETTDHPPVHPTGELPAASDLSEDEWEVYELI 402
Query: 422 VRHFLACVSQPAV-----------GAET-IVE--------------------INIAGEVF 449
VR FLA ++PA GA T I E + G
Sbjct: 403 VRRFLATCAEPATWERLRVVALANGAATGIAERADGLAALRNSDEASGPGDLVADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ T D+ T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLALTDRRTDAKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K G+GT AT H ++KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRGVGTKATRHRTLEKLYDRNYIESDPPR---PTRLAEAVVEAAEEFAEHIVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM+ ++ G K +V + F D + EA+G ++
Sbjct: 580 AQLERDMQAIAAGEKGYDEVTEESRTLLDRVFDDLTESR----EAVGDHLQK------SL 629
Query: 630 AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
A + + C C E +++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 630 KADKTLGPCPECGE-DLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLILDETCED 686
>gi|385802643|ref|YP_005839043.1| DNA topoisomerase I [Haloquadratum walsbyi C23]
gi|339728135|emb|CCC39257.1| DNA topoisomerase I [Haloquadratum walsbyi C23]
Length = 857
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 184/686 (26%), Positives = 329/686 (47%), Gaps = 61/686 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS + RE + +Y++ G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGDSATADRE---QGVNVYKWG----GKRC----IGLSGHVVA 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF + Y W +P +L AP+ K+ K++I TL++ ARR + +++ D DREGE
Sbjct: 56 VDFPQEYSDWRDVEPIELIDAPIEKN--PTKQNIVTTLKKLARRARRVIIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ + + A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRRVNESTPIDRVRFSSITEESVTTAFENPDDLDFNLAAAGEARQVIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TR+ ++ D +S G Q PTL +V+R EI+A + E++W +
Sbjct: 174 AALTRYLSLSAGQLGSD--------FISVGRVQGPTLKLIVDREREIEAFDPEDYWELFV 225
Query: 249 -------NCSHKSEEGTATFSWMRGH----------LFDYTSAVIIYEMCVQEPTATVTK 291
+++ TA F + + + ++A ++E A V
Sbjct: 226 DLTQADKPIEVSTDDTTAGFEAQYFYHADDGTEAERITEESTAKTVFETLESASIAHVDS 285
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSG 351
V+++ + PP P +T + A+ +++ M +AEDLY AG+I+YPRT+ +
Sbjct: 286 VKRRTRTDEPPAPFNTTQF-ISAAGSIGYAAQRAMDIAEDLYTAGYITYPRTDNTVYPDD 344
Query: 352 TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWS 411
+ +++ +G A+ +LD +P +G + HPPIHPT S
Sbjct: 345 LDPRELIEALTNGSRFGSDARDVLDQET---LSPTTGDEETTDHPPIHPTDELPKPSELD 401
Query: 412 QDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS--TSGRVILAKNYLDVYRFES 469
D +++YEL+VRHFLA VS PA E + + I + +S ++GR +L Y VY + +
Sbjct: 402 DDKWEVYELIVRHFLATVSNPATW-EHLRIVAIVDDAYSIKSNGRRLLNPGYHAVYPYSN 460
Query: 470 WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKL 529
+IP G+ +++ T+PP ++ L+ M+ GIGT ++ H+ I+KL
Sbjct: 461 ATESLIPDIEDGETLRLIDSRIEAKQTQPPRRYGQSRLIETMESMGIGTKSSRHNVIQKL 520
Query: 530 LDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV 589
+R Y D PT + A+V ++ + + + +E+DM+ ++ G ++
Sbjct: 521 YNRGYIESDPPR---PTQLARAVVEAAEEFAELIVSEEMTAQLETDMQAIAEGEET---- 573
Query: 590 LANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK 649
L + ++ D K + +G +R A + + C C E +++ +
Sbjct: 574 LESVTSASRSILTDVFKKLMNTDAEIGDHLQR------SMKADKTIGPCPQC-EGDLITR 626
Query: 650 KSRDGNLMVGCLAFPQCRNAVWLPGS 675
KS+ G+ +GC ++P C + LP +
Sbjct: 627 KSQAGSHFIGCDSYPDCEYTLPLPST 652
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESN------MVLKKSRDGNLMVG 659
L+++K+L F E + A + R G C E N + +K+ R G+ +VG
Sbjct: 667 LQQIKMLAGKRSFVHGCPLCEAEAADEQADRVIGTCPECNTHADGELAIKRLRSGSRLVG 726
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
C +P C ++ LP E VT N C+
Sbjct: 727 CTRYPDCEYSLPLPRQ-GEIDVTDNICD 753
>gi|322369955|ref|ZP_08044517.1| DNA topoisomerase [Haladaptatus paucihalophilus DX253]
gi|320550291|gb|EFW91943.1| DNA topoisomerase [Haladaptatus paucihalophilus DX253]
Length = 858
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 191/673 (28%), Positives = 311/673 (46%), Gaps = 51/673 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +Y++ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GESAEADRQNGVNVYKWG----GKRC----IGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I +TL AR + + D DREGE
Sbjct: 52 VDFPPEYNDWRDVEPVELIDASVEKQPT--KENIVRTLRLLARDASRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + ++R RFS++ E+ A +N + + A A +ARQ IDL G
Sbjct: 110 IGKEAWELVREVNEDVPIQRVRFSSITKNEVSSAFENPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + N +S G Q PTL +V+R EIQA + EE+W +
Sbjct: 170 AALTRFLSLSARQLG--------NDFISVGRVQSPTLKLIVDREREIQAFDPEEYWEMFA 221
Query: 251 S-HKSEEGTATFSWMRGH-------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
K +E + + R ++D +A YE ATV V ++ + PP
Sbjct: 222 DLQKDDEAFESQYFYRDEDGNEAERVWDEETAEKAYETLESATQATVDSVSRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ +
Sbjct: 282 APFNTTQF-IRAAGSLGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDTFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
G+ +G A LL+ P G + HPPIHPT+ + D + +YELVV
Sbjct: 341 GNYHFGDDADGLLEQDD---IEPTEGDEETTDHPPIHPTEDIPTKGELGDDEWDVYELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V++ A V + +G+ +L + Y VY + + +P G+
Sbjct: 398 RRFFATVAESAKWEHLKVVSTVDDLTLKANGKRLLKEGYHAVYPYFNTSENYVPNVEEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
++ T+PP ++ L+ M+K GIGT +T H+ I+KL DR Y D
Sbjct: 458 DLSIIDTRIEDKQTQPPRRYGQSRLIEKMEKMGIGTKSTRHNTIQKLYDRGYLESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + +A+V +D + + +E DM ++ G DV + + + F
Sbjct: 517 --PTRLAQAVVKAAEDYADLVVSETMTRELEEDMTAIAEGEADLEDVADSSREILATVFD 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMVGC 660
D + ++ G + QQ+ E + G C E ++++++SR G+ VGC
Sbjct: 575 DLEESREEI------------GKQLQQSLKE-DKTLGPCPECGEDLLVRQSRRGSYFVGC 621
Query: 661 LAFPQCRNAVWLP 673
+P C + LP
Sbjct: 622 DGYPDCTYTLPLP 634
>gi|110667236|ref|YP_657047.1| DNA topoisomerase I [Haloquadratum walsbyi DSM 16790]
gi|109624983|emb|CAJ51396.1| DNA topoisomerase I [Haloquadratum walsbyi DSM 16790]
Length = 857
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 183/686 (26%), Positives = 328/686 (47%), Gaps = 61/686 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS + RE + +Y++ G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGDSATADRE---QGVNVYKWG----GKRC----IGLSGHVVA 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF + Y W +P +L AP+ K+ K++I TL++ ARR + +++ D DREGE
Sbjct: 56 VDFPQEYSDWRDVEPVELIDAPIEKNPT--KQNIVTTLKKLARRARRVIIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ + + A +N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVRRVNESTPIDRVRFSSITEESVTTAFENPDDLDFNLAAAGEARQVIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW---- 246
A+ TR+ ++ D +S G Q PTL +V+R EI+A + E++W
Sbjct: 174 AALTRYLSLSAGQLGSD--------FISVGRVQGPTLKLIVDREREIEAFDPEDYWELFV 225
Query: 247 ---------TINCSHKSEEGTATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTK 291
++ + E A + + + + ++A ++E A V
Sbjct: 226 DLTQADKPIEVSTDDTAAEFEAQYFYHADDGTEAERITEESTAKTVFETLESASIAHVDS 285
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSG 351
V+++ + PP P +T + A+ +++ M +AEDLY AG+I+YPRT+ +
Sbjct: 286 VKRRTRTDEPPAPFNTTQF-ISAAGSIGYAAQRAMDIAEDLYTAGYITYPRTDNTVYPDE 344
Query: 352 TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWS 411
+ +++ +G A+ +LD +P +G + HPPIHPT S
Sbjct: 345 LDPRELIEALTNGSRFGSDARDVLDQET---LSPTTGDEETTDHPPIHPTDELPKPSELD 401
Query: 412 QDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS--TSGRVILAKNYLDVYRFES 469
D +++YEL+VRHFLA VS PA E + + I + +S ++GR +L Y VY + +
Sbjct: 402 DDKWEVYELIVRHFLATVSNPATW-EHLRIVAIVDDTYSIKSNGRRLLNPGYHAVYPYSN 460
Query: 470 WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKL 529
+IP G+ +++ T+PP ++ L+ M+ GIGT ++ H+ I+KL
Sbjct: 461 ATESLIPDIEDGETLRLIDSRIEAKQTQPPRRYGQSRLIETMESMGIGTKSSRHNVIQKL 520
Query: 530 LDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV 589
+R Y D PT + A+V ++ + + + +E+DM+ ++ G ++
Sbjct: 521 YNRGYIESDPPR---PTQLARAVVEAAEEFAELIVSEEMTAQLETDMQAIAEGEET---- 573
Query: 590 LANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK 649
L + ++ D K + +G +R A + + C C E +++ +
Sbjct: 574 LESVTSASRSILTDVFKKLMNTDAEIGDHLQR------SMKADKTIGPCPQC-EGDLITR 626
Query: 650 KSRDGNLMVGCLAFPQCRNAVWLPGS 675
KS+ G+ +GC ++P C + LP +
Sbjct: 627 KSQAGSHFIGCDSYPDCEYTLPLPST 652
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESN------MVLKKSRDGNLMVG 659
L+++K+L F E + A + R G C E N + +K+ R G+ +VG
Sbjct: 667 LQQIKMLAGKRSFVHGCPLCEAEAADEQADRVIGTCPECNAHADGELAIKRLRSGSRLVG 726
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
C +P C ++ LP E VT N C+
Sbjct: 727 CTRYPDCEYSLPLPRQ-GEIDVTDNICD 753
>gi|448349641|ref|ZP_21538473.1| DNA topoisomerase I [Natrialba taiwanensis DSM 12281]
gi|445639434|gb|ELY92545.1| DNA topoisomerase I [Natrialba taiwanensis DSM 12281]
Length = 801
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 190/673 (28%), Positives = 318/673 (47%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ ++ ILS RE +YE+ G C ++GH++
Sbjct: 3 LIITEKNNAARRISDILSGGTYDTTRENGV---NVYEWG----GTRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL +R+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILSRKATQVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDDGVPIRRVRFSSITETEVKNAFDEPDELDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ N +S G Q PTL +V+R EIQA + E++W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLRLIVDREREIQAFDPEDYWELVA 221
Query: 249 NCSHKSEEGTATFSW------MRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ + E A + + +++ +A ++E Q TATV V ++ + PP
Sbjct: 222 DVAKGEEAFEAQYFYYDEDDNEAERVWEEAAAEEVFETLSQRETATVVDVNRRTRTDSPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ E +
Sbjct: 282 APFNTTQF-IRAAGSLGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GHP G A+ LL+ + P G + HPPIHPT S D + ++ELVV
Sbjct: 341 GHPSLGESAESLLETDDIV---PTEGDEETTDHPPIHPTGEIPARGDVSDDEWDVFELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V A +G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFYATVAADAVWEHLKVVAEAADHRLKANGKRLVEPGYHDVYPYFSTTENYVPDVEEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
T + L+ T+PP ++ L+ M+ GIGT +T H+ I+KL DR Y D
Sbjct: 458 DISITDVELEDKQTQPPRRYGQSRLIETMEDMGIGTKSTRHETIQKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + ++ + +E+DM ++ G DV + ++ F
Sbjct: 517 --PTKLAMAVVEATENYADRVVSEDMTAQLEADMDAIASGEAGLEDVTDESREMLEEIFA 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ C C E ++++++SR G+ VGC
Sbjct: 575 NLADSRDEIGDHL-----RKSLKDDKRLG-----PCPDCGE-DLLVRRSRHGSYFVGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 624 YPDCEFTLPLPST 636
>gi|27882184|gb|AAH43953.1| MGC53016 protein, partial [Xenopus laevis]
Length = 698
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 165/485 (34%), Positives = 254/485 (52%), Gaps = 25/485 (5%)
Query: 164 AVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQ 223
A+ L +PN+ A +VDARQE+DLRIG +FTRFQT K F D +L+ S+GPCQ
Sbjct: 3 AMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQ 58
Query: 224 FPTLGFVVERYWEIQAHESEEFWT--INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMC 281
PTLGF VER+ +IQ+ + E +W + SH +E + W R +FD A + +
Sbjct: 59 TPTLGFCVERHDKIQSFKPETYWVLQVKVSH-GQEHPLSLDWDRVRVFDREIAQMFINIT 117
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
A V V ++EK K P L+T+E+ + AS M +HTM++AE LY G+ISYP
Sbjct: 118 KTAKEAQVESVSKKEKAKQRPQALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYP 177
Query: 342 RTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT 401
RTET + +L G +++Q +P W + LL A G+ N G D HPPI P
Sbjct: 178 RTETTHYPENFDLKGTLKQQANNPFWADTVKTLL--AEGI--NRPRKGADAGDHPPITPM 233
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY 461
+ S+ ES D ++LYE + RHF+A +S +T + ++ E+F+T+ + +++ +
Sbjct: 234 R-SATESELGGDAWRLYEYITRHFIATISHDCKYLQTSIAFSVGPEMFTTTCKEVISPGF 292
Query: 462 LDVYRFESWGGL----VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
++ W G+ + G +F + L T PP L+EA+L++ M+K GIG
Sbjct: 293 TEIM---PWQGIPKEESFESCQRGDKFSVDEMKLVEKQTCPPDYLTEAELITLMEKHGIG 349
Query: 518 TDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMK 577
TDA++ HI + R Y ++ R PT++G LV GY + EL P +RS +E +
Sbjct: 350 TDASIPVHINNVCQRNYVTVESGRRLKPTSLGIVLVHGYYKIDAELVLPTIRSAVEKQLN 409
Query: 578 EVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQ 637
++ G + VL + L K F + E M + F + A G+ + +
Sbjct: 410 LIAQGKANFQQVLDHTLDIFKRKFHYFVDSIAGMDELMEVSFSPLA------ATGKPLSR 463
Query: 638 CGICQ 642
CG C
Sbjct: 464 CGKCH 468
>gi|448728862|ref|ZP_21711183.1| DNA topoisomerase I [Halococcus saccharolyticus DSM 5350]
gi|445796237|gb|EMA46748.1| DNA topoisomerase I [Halococcus saccharolyticus DSM 5350]
Length = 861
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 205/765 (26%), Positives = 346/765 (45%), Gaps = 66/765 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+++A ILS R N + + + G+ C ++GH++E
Sbjct: 3 LIITEKETAARNIAEILSGESA-----DVDRRNGVNVYKWG--GRRC----VGLSGHVVE 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF Y W +P +L A V E +++I +TL AR +++ D DREGE
Sbjct: 52 NDFPPEYSNWRDVEPVELIDAEVVVEPHESRENIVRTLRLLARDADGVIIATDYDREGEL 111
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V +RRARFS+ + E+ +A +L D + A A +ARQEIDL G
Sbjct: 112 IGKEAHDIVRDVT-DAPIRRARFSSFAEPEVREAFDDLDDLDFELAAAGEARQEIDLVWG 170
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ K D +S G Q PTL +V+R EI+A + +++W + C
Sbjct: 171 AALTRFLSLSAKQMGSD--------FISVGRVQSPTLKLIVDREREIEAFDPDDYWELFC 222
Query: 251 SHKSEEGTATFSWMRG-------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+E T + ++D A +Y+ TA V +VR++ + PP
Sbjct: 223 DLAKDEATFEAQYFYDDDGSEAERVWDGDVAEAVYDALRGASTAAVEEVRRRTRTDDPPT 282
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T + RA+ S++ M +AE+LY AG+I+YPRT+ + ++ ++ E
Sbjct: 283 PFNTTQY-IRAASSLGYSAQRAMSLAEELYTAGYITYPRTDNTVYPDDLDVAELLSEFTD 341
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
H ++G A LL + P G + HPPIHPT + D +YELVVR
Sbjct: 342 HSEFGDDADALLKNEP----TPTEGDEETTDHPPIHPTGELPSTTELGDDERAVYELVVR 397
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F A V+ PA V +G+ +L Y VY + +P G +
Sbjct: 398 RFFATVADPAEWEHLRVTAVAGDHQLKANGKRLLEPGYHAVYPYVDSTENHVPDVEEGDE 457
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + ++ T+PP ++ L+ M+ GIGT AT H+ I+KL DR Y D
Sbjct: 458 LPVSDVRSEAKETQPPRRRGQSRLIETMESMGIGTKATRHNTIEKLYDRGYIENDPPR-- 515
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + +A+V + ++ + +E+DM ++ G + +V + + F +
Sbjct: 516 -PTTLAKAVVDAGERFAEQVVSEEMTEQLEADMDAIASGEITLNEVTDESREMLSTVFEE 574
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCL 661
+ EA+G + + + +V + G C + + +++++SR G+ VGC
Sbjct: 575 LHDSR----EAIGDYL---------RNSLKVDKTLGPCPDCGAALLVRRSRHGSYFVGCD 621
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGC---- 717
+P C + LP S + + TC+ + + R ++ G N GC
Sbjct: 622 GYPDCEFTLPLPSS-GKPVIQEETCD----------EHELRAVKMLDGRNTFVHGCPICA 670
Query: 718 IGGCDETLRQLIEICGT-GSRIPARGRGPTASSNNGQQSNHRQRA 761
DET ++I +C G+ A G +G+ + R+
Sbjct: 671 AEDADETEDRVIGMCPECGNEEGATPEGSRGEGGDGEAQSASDRS 715
>gi|108804786|ref|YP_644723.1| DNA topoisomerase I [Rubrobacter xylanophilus DSM 9941]
gi|108766029|gb|ABG04911.1| DNA topoisomerase I [Rubrobacter xylanophilus DSM 9941]
Length = 702
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 192/665 (28%), Positives = 304/665 (45%), Gaps = 39/665 (5%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L ++EK + A+ +A L++ ++EG+ R + F + RG+ C + + GH++
Sbjct: 3 LIISEKANAARKIAQFLAEGP---VKEGKHRSVPYHTFTW--RGEEC--VSVGLKGHVLN 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
++ E Y W DP +L A + K V E K + + A++ +++ D DREGE
Sbjct: 56 PEYPEEYSNWQKVDPRELIDARILKSVSE--KGVAAAVRSLAKKADRVIIATDFDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLV--LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
I E + + N L+ + RARFSAL E+ +A +NLV+ ++ ADA +ARQ+IDL
Sbjct: 114 IGVEALSLAFEANPALMDHVERARFSALTKGEVTRAFENLVEVSRELADAGEARQDIDLI 173
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GA+ TR+ + +K + + LS G Q PTL + ER E +A E +W +
Sbjct: 174 WGATLTRWVSRAVKRYG--------SAFLSVGRVQSPTLVLIAERELERRAFVPEPYWEV 225
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
++ G RG + A E + TA VT+VRQ+E + P P +T
Sbjct: 226 EARLQNGGGPFVARHARGRFKEEAEARRALENLSE--TAVVTEVRQREATRPAPAPFNTT 283
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
A+ +S ++AEDLY G+ISYPRT+ + +L ++ G
Sbjct: 284 AFLTAAAN-IGVSPSRAARIAEDLYTEGYISYPRTDNTVYPESLDLREVLGFLAEVEGVG 342
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
YA RLL AG P G HPPI+PT +S + +D +K+Y+LVVR FLA
Sbjct: 343 DYAGRLL--GAGRL-TPTRGRRQTTDHPPIYPTGRAS-RAELREDQWKIYQLVVRRFLAT 398
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
+S PA T + GE G V+ + +L VY + +P G +
Sbjct: 399 LSGPAKTLRTTLRFESGGEPLVAGGTVVTEEGWLAVYHYGRRRDEELPRLSEGDEVRVAE 458
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
L + T+PP + L+ M+ G+GT AT I+ L DR Y D PT
Sbjct: 459 AELLAKETQPPGRYGQGRLIRLMEDLGLGTKATRPGIIQNLYDRGYIHGDP---IVPTET 515
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G A+ D E+ + + +E M +S G SK V+ + ++ + +
Sbjct: 516 GMAVAKALKDFASEIASHEMTARLEKSMDAISEGRVSKDSVVEESRELLRRVYDHLESSE 575
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
K + + W+G + G C C + +V + R+ GC +P+CR
Sbjct: 576 EKFADIV------WNGIRGDETLG----PCPNCGRNLVVRRNRRNRKRFAGCEGYPECRT 625
Query: 669 AVWLP 673
LP
Sbjct: 626 TFPLP 630
>gi|354611994|ref|ZP_09029946.1| DNA topoisomerase [Halobacterium sp. DL1]
gi|353191572|gb|EHB57078.1| DNA topoisomerase [Halobacterium sp. DL1]
Length = 828
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 194/690 (28%), Positives = 322/690 (46%), Gaps = 62/690 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFN-YSIRGQPCHMLMTSVTGHLM 69
L V EK + A+ +A ILS EG + + N Y G+ C ++GH++
Sbjct: 3 LIVTEKNNAARRIADILS--------EGGASTDTYAGVNVYEWGGRRC----IGLSGHVV 50
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF Y W +PA+L HA V K ++DI L+ AR +++ D DREGE
Sbjct: 51 GVDFPPEYSDWRDVEPAELVHADVVKEPT--QEDIVNALQRLAREADSVIIATDYDREGE 108
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
I E E+ RAVN ++R RFS++ D E+ A N + + A A +ARQ IDL
Sbjct: 109 LIGKEAFELVRAVNEEAPVKR-RFSSITDNEVRSAFANPDEIDFDLAAAGEARQTIDLMW 167
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+ TRF ++ K D +S G Q PTL +V++ EI+A E +++W +
Sbjct: 168 GAALTRFLSLSAKQMGSD--------FISVGRVQTPTLKLIVDKEREIEAFEPDDYWELF 219
Query: 250 CS-------------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
++SE+GT +++ A + + A V V +
Sbjct: 220 ADLTKDETEFEAQYFYESEDGTEA-----ERVWNEDDAEAAFATLREASEAIVQSVSSRT 274
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
+ PP P +T + RA+ S+ M +AEDLY AG+++YPRT+ + +
Sbjct: 275 RTDDPPAPFNTTQF-IRAAGSLGYSAGRAMSIAEDLYTAGYVTYPRTDNTVYPDDLDERE 333
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
++ + +G A LL+ P G + HPPIHPT ++ S+D ++
Sbjct: 334 LLA-AFENTVFGDSATSLLERDD---LTPTEGDEETTDHPPIHPTSDFPDRNQLSEDEWE 389
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
+YELVVR F A ++ AV V + GE ++G+ ++ + Y VY + + +P
Sbjct: 390 VYELVVRRFFATLAPSAVWEHLRVVADADGERLKSNGKRLVEEGYHAVYPYFNTSENHVP 449
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
G+ +++ T+PP ++ L+ M+ G+GT +T H+ I+KL DR Y
Sbjct: 450 AVEEGEALALADARIEAKQTQPPRRYGQSRLIETMEDLGVGTKSTRHNTIEKLYDRGYIE 509
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
D PT + +A+V ++ + + S +E+DM ++ G KS DV +
Sbjct: 510 NDPPR---PTTLAKAVVEAAEEYADLVVSEEMTSELEADMTAIADGEKSLDDVTDESREI 566
Query: 597 MKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNL 656
+ F D + ++ E + + A + + +C C E+ ++++ SR G+
Sbjct: 567 LDRVFDDLASSREEIGEHLRTSLK----------ADKTLGECPDCGET-LLVRSSRTGSY 615
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
VGC +P+CR + LP S E V C
Sbjct: 616 FVGCDGYPECRFTLPLP-STGEPLVLDEAC 644
>gi|448306300|ref|ZP_21496208.1| DNA topoisomerase I [Natronorubrum bangense JCM 10635]
gi|445598359|gb|ELY52418.1| DNA topoisomerase I [Natronorubrum bangense JCM 10635]
Length = 828
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 186/675 (27%), Positives = 318/675 (47%), Gaps = 49/675 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +PA+L A V K K++I TL +R+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPAELIDADVEKTAT--KENIVATLRILSRKATRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + ++R RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYEIVRDVNEDVPIQRVRFSSITENEVQSAFDEPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TRF ++ N +S G Q PTL +V+R EI+A + E +W +
Sbjct: 170 ASLTRFLSLSAGQLG--------NDFISVGRVQSPTLKLIVDREREIEAFDPESYWELFA 221
Query: 251 SHKSEEGTATFS---WMRGH-------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+ ++ T F + R +++ A +Y+ +ATV V ++ +
Sbjct: 222 DLEKDDDTDAFEAQYFYRDEDDNEAERVWEEAVADEVYDTLSSHDSATVVDVTRRTRTDT 281
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PP P +T + RA+ +++ M +AE+LY AG+++YPRT+ + ++ +
Sbjct: 282 PPTPFNTTQF-IRAASSIGYTAKRAMSIAEELYTAGYVTYPRTDNTVYPDDLEPEELLDD 340
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
+GH G A+ LL+ + P G + HPPIHPT S D ++++EL
Sbjct: 341 FVGHSTLGESAESLLEADEIV---PTEGDEETTDHPPIHPTGEIPTRGDVSDDEWEIFEL 397
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
VVR F A V+ AV V + +G+ ++ Y +VY + S +P
Sbjct: 398 VVRRFFATVADAAVWEHLKVVAEVDDYRLKANGKRLVEPGYHEVYPYFSTTENFVPDVDE 457
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G++ + + L+ T+PP ++ L+ M+ G+GT +T HD ++KL DR Y D
Sbjct: 458 GEELSLSGVELEEKETQPPRRYGQSRLIETMEDLGVGTKSTRHDILEKLYDRGYVESDPP 517
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
PT + A+V ++ + + + +E DM ++ G + DV + ++
Sbjct: 518 R---PTRLAMAVVEAAEEYADRVVSEGMTAQLERDMDAIAQGEATLDDVTDESREMLEEI 574
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
F A L + + E +G R S +D++ C C E ++++++SR G+ +GC
Sbjct: 575 F--ANLAESR--EDIGDHL-RKSLKDDKRLG-----PCPECGE-DLLVRRSRHGSHFIGC 623
Query: 661 LAFPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 624 DGYPDCEYTLPLPST 638
>gi|355572493|ref|ZP_09043605.1| DNA topoisomerase [Methanolinea tarda NOBI-1]
gi|354824533|gb|EHF08778.1| DNA topoisomerase [Methanolinea tarda NOBI-1]
Length = 946
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 205/688 (29%), Positives = 327/688 (47%), Gaps = 63/688 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK A+ +A IL+ + +RE + Y FN + + + GH++E
Sbjct: 3 LIVAEKNISARRIASILAGEKN--VRELKDGGISSYSFNGTT--------VVGLRGHVVE 52
Query: 71 LDFDERYRKW--HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+DF E Y W S P L AP K VP +KK I L++ A++ + + D D EG
Sbjct: 53 VDFVEGYSNWRSESKTPRSLIDAPTIK-VPTEKK-IVALLQKLAKKATRVTIATDFDTEG 110
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E I E E+ RAVN + + R RFSA+ EI A + + + A A +ARQ IDL
Sbjct: 111 ELIGKEAYELVRAVNPSVPVDRVRFSAITPGEIRHAFASPTEIDFALASAGEARQVIDLM 170
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GAS TRF ++ K + +LS G Q PTL +V+R EI+A + E++W +
Sbjct: 171 WGASLTRFLSLAAKRGGAN--------ILSVGRVQSPTLAMIVDREREIEAFKPEKYWQL 222
Query: 249 N--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
E+ A + R H FD A+ E V P VT V + K+ P P
Sbjct: 223 RLLTGKGGEDIEARHTTSRFHTFD--EALAAKERSV--PPLVVTSVVEGTKVDRAPSPFD 278
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI---VQEQIG 363
T A+R S+ + M++AE+LY G+ISYPRT+ + + +L + ++ +
Sbjct: 279 TTSFIVAAAR-LGYSAANAMRIAEELYMNGYISYPRTDNTVYPATLDLGSVLSAIRPTVF 337
Query: 364 HPD--WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
PD W QR + P G HPPIHPT +G ++ +KLYELV
Sbjct: 338 RPDVEWVMANQRPV---------PTRGQKVSTDHPPIHPTG-PAGREELGEERWKLYELV 387
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR FLA +S A V ++ GE ++ +G IL + VY + + V+P G
Sbjct: 388 VRRFLATLSPDARWRTMKVMLSAGGEPYTVTGGQILEPGWRKVYPYSAATEYVLPGLKEG 447
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ + ++ T+PPP +++ L+ M++ G+GT +T H+ I+KL+ R Y + N
Sbjct: 448 EVLPLREVRMEEKETQPPPRFTQSRLIQRMEELGLGTKSTRHEVIQKLVSRKYV--EGNP 505
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G A++ ++ + +P + +ES M+++ + DV+ + F
Sbjct: 506 -LRPTLVGRAVIESLENHADTITRPEMTQTLESHMQQIKERARKSDDVVQESRGMLHQLF 564
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVR--QCGICQESNMVLKKSRDGNLMVG 659
LEA E+ G E ++ E +R C +C ++ + R+ +G
Sbjct: 565 --------DQLEA----HEQEIGDEIREQTAEELRLGPCPVCGH-DLRIHHVRNQTQFIG 611
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTN-TC 686
C +P+C + LP ++ A+ T+ TC
Sbjct: 612 CTHYPECTFNIGLPATMWGYALRTDRTC 639
>gi|448412916|ref|ZP_21576807.1| DNA topoisomerase I [Halosimplex carlsbadense 2-9-1]
gi|445667618|gb|ELZ20259.1| DNA topoisomerase I [Halosimplex carlsbadense 2-9-1]
Length = 863
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 195/686 (28%), Positives = 321/686 (46%), Gaps = 52/686 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS + R+ N +YE+ + ++GH++
Sbjct: 3 LIITEKNNAARRIAEILSGGSATTTQ--RNGVN-VYEWGLTT--------CVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF E Y W +P +L A + K +++I +TL + AR + D DREGE
Sbjct: 52 VDFPEEYSDWRDVEPVELIDADIVKSPT--QENIVRTLRQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R ++R RFS++ +RE+ A D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDAPVKRVRFSSITEREVKSAFDEPDDIDFDLAAAGEARQVIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W +
Sbjct: 169 AALTRFLSLSARQLGQD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWELFA 220
Query: 249 NCSHKSEEGTATFSWMRG-----HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+ + E A + + ++D A +E + +A VT VR++ + PP
Sbjct: 221 DLAKDGETFEAQYFYDDDGSEAERVWDEADADEAHERLREATSAEVTSVRRRTRTDNPPA 280
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T A+ S++ M +AE+LY G+I+YPRT+ + + ++ E
Sbjct: 281 PFNTTAF-ISAAGSLGYSAQRAMSIAEELYTTGYITYPRTDNTVYPEDLDPEELLDEFTM 339
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
++G A+ LL+ P G + HPPIHPT +D +++YELVVR
Sbjct: 340 THEFGDDAESLLERDE---IEPTEGDDETTDHPPIHPTGAVPDRDELDEDEWEVYELVVR 396
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F A V++ A V G +G+ +L Y DVY + S +P G
Sbjct: 397 RFFATVAEAATWEHLRVVAAANGCQLKATGKRLLEAGYHDVYPYSSASESFLPPVEEGDA 456
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
T + L++ T+PP ++ L+ M+ GIGT AT H+ I+KL DR Y D
Sbjct: 457 LDVTDVELEAKQTQPPRRYGQSRLIQQMEDMGIGTKATRHNVIEKLYDRGYIESDPPR-- 514
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT++ EA+V ++ + ++ + +E+DM ++ G + DV A + + F +
Sbjct: 515 -PTSLAEAVVEAAEEFADLVVSEDMTAQLEADMSAIANGEATLDDVTAESREMLDRVFEE 573
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQES--NMVLKKSRDGNLMVGCL 661
R + + G+ Q + + R+ G C ES ++++++SR G+ VGC
Sbjct: 574 LRDSREDI-------------GDHLQESLKADRRLGPCPESDHDLLVRQSRQGSYFVGCD 620
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCN 687
FP+CR + LP S E V C
Sbjct: 621 GFPECRYTLPLP-STGEPLVLEEACE 645
>gi|392892251|ref|NP_001254382.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
gi|371571202|emb|CCF23413.1| Protein Y48C3A.14, isoform c [Caenorhabditis elegans]
Length = 733
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 274/531 (51%), Gaps = 31/531 (5%)
Query: 150 RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSV 209
RA FSA+ +++I A++NL P+Q + +VDARQE+DLRIG SFTRFQT + + D
Sbjct: 14 RAHFSAITEKDIKAAMRNLGRPDQNMSHSVDARQELDLRIGCSFTRFQTKFFQGKYGDL- 72
Query: 210 TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFS--WMRGH 267
D N V+SYGPCQ PTLGF V R+ +I + E++W + + + + FS W RG
Sbjct: 73 --DSN-VISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPEWQRGR 129
Query: 268 LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMK 327
+FD A + + + T V V ++E K P L+T+EL + AS MS TM
Sbjct: 130 IFDAEVARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMH 189
Query: 328 VAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGS 387
VAE LY G+ISYPRTET ++S+ +L G ++ G WG ++L A G+ R P S
Sbjct: 190 VAEALYTQGYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQVL--ADGIKR-PKS 246
Query: 388 GGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGE 447
G D HPPI P + + G S D ++YE V +HF+A + + V T V+++ E
Sbjct: 247 -GVDKGDHPPITPMRPNHGG--LSGDMSRIYEYVSQHFVATLMKQCVYEVTTVKMSCGDE 303
Query: 448 VFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH--GQQFIPTTLTLDSGVTRPPPLLSE 504
F+ G+ ++ + V + S +P + G + + + T PP L+E
Sbjct: 304 QFTLQGKNVVEPGFTAVMPWLSVEEECSVPKSLQQIGAKIELQNAEIQARETTPPGYLTE 363
Query: 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELW 564
A+L++ M+K GIGTDA++ HI + R Y ++ R PT +G+ LV GY + EL
Sbjct: 364 AELITLMEKHGIGTDASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELV 423
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQ--QMKACFLDARLKKVKLLEAMGIFFERW 622
P +R+ +E + V+ G DV + L+ +MK + + V L F +
Sbjct: 424 LPTMRAELEEQLNLVASGKADYLDVKNHALKMFEMKFQYFVTNIPAVDTL-----FEASF 478
Query: 623 SGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
+ D G+ +CG C+ M L +++ L P C+ +P
Sbjct: 479 TTLSD---TGKPFSRCGKCRRY-MKLVQTKPQRLYC-----PTCQETYAVP 520
>gi|395645621|ref|ZP_10433481.1| DNA topoisomerase type IA central domain protein [Methanofollis
liminatans DSM 4140]
gi|395442361|gb|EJG07118.1| DNA topoisomerase type IA central domain protein [Methanofollis
liminatans DSM 4140]
Length = 942
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 195/677 (28%), Positives = 315/677 (46%), Gaps = 66/677 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK A+ +A +L+ N + + Y F+ ++ + + GH++E
Sbjct: 3 LIVAEKNISARRIAAMLAGNN--HVTNKKEGGVDTYAFDDTV--------LVGLKGHVVE 52
Query: 71 LDFDERYRKWHSCD--PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+DF E Y W S + P L A + K E K I L++ A++ + + D D EG
Sbjct: 53 VDFVEGYTNWRSEERPPRSLIDAGIVKRPTE--KRIVSLLQKLAKKADLVTIATDFDTEG 110
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E I E E+ RAVN + + RARFSA+ +EI +A L + + A A ++RQ IDL
Sbjct: 111 ELIGKEAYELVRAVNKGVRILRARFSAITPQEIKRAFSELTELDFALAAAGESRQIIDLM 170
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GAS TRF ++ + + +LS G Q PTL + +R EI++ +++W +
Sbjct: 171 WGASLTRFISIAARRGGAN--------ILSVGRVQSPTLAMIADREKEIESFVPQKYWML 222
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
K + G D+ A+ + EP TVT+V++ K P P T
Sbjct: 223 TLDTKKDGSPLELRHTHGRFVDHDDALAARKRTT-EPL-TVTEVKEGVKNDRAPTPFDTT 280
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLH---GIVQEQI--G 363
L A R S+ + M+VAEDLY GFISYPRT+ + + NL G+++ G
Sbjct: 281 SLLVAAGR-LGFSAANAMRVAEDLYMNGFISYPRTDNTVYPASLNLDEVLGVLKATAFSG 339
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS----GESRWSQDHYKLYE 419
W +R P G HPPIHPT ++ GE RW KLYE
Sbjct: 340 DVAWVERHRR---------PEPTRGKKSSTDHPPIHPTGAATPAQLGEERW-----KLYE 385
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVVR FLA +S A V + GE ++ +G + + + VY + +IP
Sbjct: 386 LVVRRFLATLSPDARWLTMKVNFDAGGEPYTVTGGQLKEEGWRRVYPYSEAAERLIPACT 445
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G++ + L+ T+PPP +++ L+ M++ G+GT +T H+ I KL+ R Y
Sbjct: 446 VGERLPILGVNLEEKETQPPPRYTQSRLIQTMEELGLGTKSTRHEVIGKLVSRRYV---Q 502
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
PT +G A+V + + +P++ +E+ M+++ +++ DV+ + +
Sbjct: 503 GNPLRPTLVGRAVVESLEKHADTITRPDMTRTLEASMQQIKESTRTRDDVVGESRAMLHS 562
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGE--DQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
F D LEA E G E D+ V C +C + ++ +++ +
Sbjct: 563 VFDD--------LEA----HEEQIGAEIMDRTVEERTVGPCPVCGK-DLQIRQVHGASQF 609
Query: 658 VGCLAFPQCRNAVWLPG 674
+GC +P+C + LPG
Sbjct: 610 IGCSGYPECTFNISLPG 626
>gi|52549025|gb|AAU82874.1| DNA topoisomerase I [uncultured archaeon GZfos21B5]
Length = 681
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 189/678 (27%), Positives = 315/678 (46%), Gaps = 46/678 (6%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+ EK + AK +A ILS + ++ + +EF+ + + ++GH+ LD
Sbjct: 5 ITEKGTTAKKIAAILS---NGKAKKKKIGGIDAHEFDEKV--------VIGLSGHVFRLD 53
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIA 132
F + Y W DP L A + KKDI KTL + A++ ++ + D DREGE I
Sbjct: 54 FPDSYNNWSKVDPYKLIDAKIVTVAL--KKDIVKTLGQIAKKADYITVATDYDREGELIG 111
Query: 133 FEVIEVCRAVNCHLVLRRARFSALIDREIHQ--AVQNLVDPNQWFADAVDARQEIDLRIG 190
E + + +N L + R R+SA+ +++I A ++ VD N A + + RQ IDL G
Sbjct: 112 VEALNSIKKINPELKVDRMRYSAITEKDIKDSFAARSEVDYN--LAASAEVRQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TRF ++ S + S G Q PTL +VE+ EI ++W ++
Sbjct: 170 ASLTRFVSL--------SANRLGDGFFSVGRVQSPTLALLVEKEKEIAKFVPRKYWELHA 221
Query: 251 SHKSEEGTA-TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
K+E G + ++ A + V ++ + +++ PP P T
Sbjct: 222 KLKTENGEIFDVTHKTAKFWEKDEAEVAKARIEAAKEGFVRTLKTKLRVEKPPTPFDTTT 281
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
RA+ + + M +AE LY G ISY RT+ ++ +L +VQ H ++G
Sbjct: 282 F-IRAASAISYTPKRLMAIAEGLYLGGLISYHRTDNTTYPDTLDLKALVQMFQKHKEFGK 340
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A+ LL P +G HPPIHP + + + +D +K+YELVVR FLA +
Sbjct: 341 HAKLLLTKKE---LKPTAGKKKTTDHPPIHPVA-ETTKDKLEKDEWKVYELVVRRFLATL 396
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
S A +T V I E + GR++ + +L +Y ++ LVIP ++ +
Sbjct: 397 SDAAKWEDTNVTAEIGDEPLTAKGRLLKEQGFLAIYPYQKKEELVIPQLKEDEKVDLEHI 456
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
L T+PP +S+A L+ MD G+GT +T H+ I KL DR Y PT
Sbjct: 457 ELVEKETKPPNRISQAGLIKKMDDLGLGTKSTRHEIIGKLYDRTYV---QGNPAKPTEKA 513
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
AL+ + + K + +E +M E+S G + K +V + +K F D + +
Sbjct: 514 VALIDSLEKYAALITKSEMTKTLELEMNEISEGKRKKKEVAEDSRNMLKDVFADLKKNRS 573
Query: 610 KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
++ ++ ++ A ++V C C +S+++L SR G VGC +P C +
Sbjct: 574 EIGNSL----------KEAVRADKIVGSCPKC-DSDLLLLSSRRGKRFVGCSNYPACEFS 622
Query: 670 VWLPGSVSEAAVTTNTCN 687
+ +P S VT + C+
Sbjct: 623 LPMPKS-GRVVVTEDKCD 639
>gi|397781506|ref|YP_006545979.1| DNA topoisomerase I [Methanoculleus bourgensis MS2]
gi|396940008|emb|CCJ37263.1| DNA topoisomerase I [Methanoculleus bourgensis MS2]
Length = 931
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 204/699 (29%), Positives = 324/699 (46%), Gaps = 62/699 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLR-IREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L +AEK A +A IL+ N+ +R ++EG Y F+ + + GH++
Sbjct: 3 LIIAEKNISANRIAQILAGNEKVRAVKEGGV---STYSFDTKT--------VVGLKGHVV 51
Query: 70 ELDFDERYRKWHSC--DPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
E+DF+ Y W S P L A K P +KK I +++ A++ + + D D E
Sbjct: 52 EVDFEPGYTNWRSKVHTPRTLIDAGTVKK-PTEKK-IVNLIQKLAKKADLVTIATDYDTE 109
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I E E+ RAVN + + RARFSA+ EI A NL D + A A + RQ +DL
Sbjct: 110 GELIGKEAYELVRAVNPAVRINRARFSAITPAEIRSAFDNLTDLDFALAAAGEVRQMVDL 169
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
GAS TRF ++ + RN +LS G Q PTL +V R EI+ + +W
Sbjct: 170 MWGASLTRFISLAARR-------GGRN-ILSVGRVQSPTLAMIVNREREIENFVPQTYWM 221
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
++ + EE G D+ +A + E +EP VT V++ +K P P T
Sbjct: 222 LSLMTEKEEQPVEARHTAGRFTDHEAA-LAAEAGTKEPL-VVTDVKEGQKNDRAPAPFDT 279
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
ASR +S+ + M++AEDLY G+ISYPRT+ + +L+ I+ G
Sbjct: 280 TTFIVAASR-LGLSAANAMRLAEDLYMNGYISYPRTDNTVYPKSLDLNAILDTLRGG--- 335
Query: 368 GPYAQRLLDHAAGLWRN-----PGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+ D R P G + HPPIHPT ++ E+ QD +K+YEL+V
Sbjct: 336 ------VFDADIAWVRQHRRPVPTRGKKESTDHPPIHPTGAATREA-LGQDRWKVYELIV 388
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R FLA +S A A + +GE ++ +G +L+ + VY + ++P G+
Sbjct: 389 RRFLATLSPDATWATVRCTFDASGEPYAATGSRLLSAGWRRVYPYSEAKEKILPVITAGE 448
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ ++ L+ T+PP S++ L+ M++ G+GT +T H+ I KL+ R Y + N
Sbjct: 449 RLPIRSVNLEEKQTQPPARYSQSRLIQVMEEHGLGTKSTRHEVIGKLISRRYV--EGNP- 505
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G A+ D+ + +P + +E M+ + +S+ DV+ + F
Sbjct: 506 LRPTLVGRAVTDALDNHAATITEPEMTRTLEEHMQLIKQRERSREDVVTESRGMLHRVF- 564
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGE-VVRQCGICQESNMVLKKSRDG-NLMVGC 660
+ + E +Q A E V C +C L+ G + +GC
Sbjct: 565 ----------DKLEAHEEEIGEEIMEQTAEEHTVGPCPVCGHD---LRIRHIGISQFIGC 611
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTN-TCNSCTPGPVYLIQ 698
+P+CR + LPGS A+ + TC V LI+
Sbjct: 612 TGYPECRFNISLPGSTWGRAIRLDETCEEHGLSHVRLIR 650
>gi|448476502|ref|ZP_21603588.1| DNA topoisomerase I [Halorubrum aidingense JCM 13560]
gi|445815365|gb|EMA65290.1| DNA topoisomerase I [Halorubrum aidingense JCM 13560]
Length = 878
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 218/801 (27%), Positives = 350/801 (43%), Gaps = 102/801 (12%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATA-----ERQNDVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L + AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKEPTQEG--IVAALRKLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ D E+ +A N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDAPIDRVRFSSITDNEVQEAFANPDELDFDLAAAGEARQVIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EI+A + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIKAFDPEAYWELYG 225
Query: 251 SHKSEEGT---ATFSWMRGH------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+ G A + ++ ++D A I+ E A V VR++ + P
Sbjct: 226 NLTKSGGDPFEARYFYLNDEGNEAERVWDGDVAEILTEALNAAEEAVVDDVRRRTRTDEP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLDPRELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A+ LLD A P G + HPPIHPT S S+D +++YEL+
Sbjct: 345 SAASTFGSDAKGLLD--ADREIEPTEGDKETTDHPPIHPTGELPSASDLSEDEWEVYELI 402
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEV--------------------------------F 449
VR FLA ++PA V GE
Sbjct: 403 VRRFLATCAEPATWERLRVVALANGEASAIAERADGLAALRDPDEAAGPGDLAADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ ++ T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLALDDRRTEAKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K G+GT AT H ++KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRGVGTKATRHRTLEKLYDRNYIESDPPR---PTRLAEAVVEAAEEFADHVVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM+ ++ G K +V A + + F D L E+ R + G+ Q
Sbjct: 580 AQLERDMQAIAAGEKDYDEVTAASRELLDRVFED-------LTES------REAVGDHLQ 626
Query: 630 AAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+ + + G C E ++++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 627 KSLKADKTLGPCPECGADLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLLLDETCE 685
Query: 688 SCTPGPVYLIQFKFRQHEIPPGFNVNHLGC----IGGCDETLRQLIEI---CGTGSRIPA 740
R ++ G GC DE ++I + CG G+ P
Sbjct: 686 D----------HDLRHVKMLAGRKTFVHGCPQCKADAADEQEDEVIGVCPECGEGAASPR 735
Query: 741 RGRGPTASSNNGQQSNHRQRA 761
G G TA + G+ + R R+
Sbjct: 736 DGGGETADA-GGELAIKRLRS 755
>gi|448363205|ref|ZP_21551808.1| DNA topoisomerase I [Natrialba asiatica DSM 12278]
gi|445647174|gb|ELZ00154.1| DNA topoisomerase I [Natrialba asiatica DSM 12278]
Length = 826
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 188/673 (27%), Positives = 318/673 (47%), Gaps = 47/673 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ ++ ILS RE +YE+ G C ++GH++
Sbjct: 3 LIITEKNNAARRISDILSGGTYDTTRENGV---NVYEWG----GTRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL +R+ + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDASVEKTAT--KENIVATLRILSRKATRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVHEVDDEVPIRRVRFSSITETEVTDAFDEPDELDFDLAAAGEARQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ N +S G Q PTL +V+R EIQA + +++W +
Sbjct: 170 AALTRFLSLSAGQLG--------NDFISVGRVQSPTLRLIVDREREIQAFDPKDYWELVA 221
Query: 249 NCSHKSEEGTATFSW------MRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ + E A + + +++ +A +E Q TATV V ++ + PP
Sbjct: 222 DVAKGEEAFEAQYFYYDEDDNEAERVWEEAAAEEAFETLSQRETATVVDVNRRTRTDSPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ + +
Sbjct: 282 APFNTTQF-IRAAGSLGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLDDFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
GHP G A+ LLD + P G + HPPIHPT S D + ++ELVV
Sbjct: 341 GHPSLGESAESLLDADDIV---PTEGDEETTDHPPIHPTGEIPARGDVSDDEWDVFELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V A +G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFYATVAADAVWEHLKVVAEAADHRLKANGKRLVEPGYHDVYPYFSTTENYVPDVEEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
T + L++ T+PP ++ L+ M+ GIGT +T H+ I+KL DR Y D
Sbjct: 458 DISITDVELEAKQTQPPRRYGQSRLIETMEDMGIGTKSTRHETIQKLYDRGYIESDPPR- 516
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT + A+V ++ + ++ + +E+DM ++ G DV + ++ F
Sbjct: 517 --PTKLAMAVVEATENYADRVVSEDMTAQLEADMDAIASGEAGLEDVTDESREMLEEIFA 574
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
+ + ++ + + R S +D++ + C C E ++++++SR G+ VGC
Sbjct: 575 NLADSRDEIGDHL-----RKSLKDDKR-----LGPCPDCGE-DLLVRRSRHGSYFVGCDG 623
Query: 663 FPQCRNAVWLPGS 675
+P C + LP +
Sbjct: 624 YPDCEFTLPLPST 636
>gi|298674647|ref|YP_003726397.1| DNA topoisomerase I [Methanohalobium evestigatum Z-7303]
gi|298287635|gb|ADI73601.1| DNA topoisomerase I [Methanohalobium evestigatum Z-7303]
Length = 742
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 184/678 (27%), Positives = 320/678 (47%), Gaps = 41/678 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIR-EGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L +AEK AK +A IL+ + ++R G Y YE N + ++ ++GH++
Sbjct: 3 LIIAEKHIAAKRIAAILAPKKPKKVRVSGVDTYE--YEDNEDDK------IVMGLSGHIV 54
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
ELDF + Y W + DL A + + K I L++ ++ + + D D EGE
Sbjct: 55 ELDFPKEYNNWQKVNAEDLIDAELITKPTQVK--IVAALKKLGKKASKVTIATDYDGEGE 112
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
I E +++ + VN + R ++SA+ ++EI A N V+ + ADA +RQ IDL
Sbjct: 113 LIGVEALDIIKKVNQDIQFDRVKYSAITEKEIKNAFSNPVNVDFNLADAGHSRQVIDLVW 172
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GAS TR+ ++ S + LS G Q PTL +V+R E +A + +W +
Sbjct: 173 GASLTRYISL--------SAGRLGKMFLSVGRVQSPTLALIVDREKEREAFVPDPYWEVY 224
Query: 250 CSHKSEEGTATFSWMRGHLF-DYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ + G + + F D + + TA VT V + K PP P +T
Sbjct: 225 ATLANSNGEEFVTQHKTQRFWDKNQVNSVVDKLKDCKTAEVTSVEKSTKQDKPPSPFNTT 284
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
E A+ ++ + M++AE LY G+ISYPRT+ + +L ++ +
Sbjct: 285 EF-ISAANSVGFTASNAMRIAETLYTNGYISYPRTDNTVYPDSLDLRNLIA-MFKSGQFK 342
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
YAQ LL+ + + P G + + HPPI+PT ++ +S ++D +K+YE+VVR F A
Sbjct: 343 QYAQYLLNKSNLV---PTRGKKETQDHPPIYPTS-AAKKSELNEDEWKIYEMVVRRFFAT 398
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
+ PA V+ +I E F G +++ + Y + S ++P G+ +
Sbjct: 399 FADPAKWETMKVKFDIGSEEFRAKGARLISPGWRWFYPYNSPEDKILPPLKKGEVLTVKS 458
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ T+PP + L+ M++ G+GT AT H+ I KL R Y + PT
Sbjct: 459 SKVADKETQPPGRYGQGRLVRIMEELGLGTKATRHEIISKLFSRAYVHSNP---LQPTKT 515
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
A++ ++ + K + S +E DM+++S G + +VL +K+ F + +
Sbjct: 516 AFAVIDALENYAPTITKHEMTSKLEEDMEKISEGKIKEDEVLKESRDMLKSMFSELESNR 575
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
+ +++ R ED+ V+ C C ES +++++S+ G+ +GC +P C
Sbjct: 576 DNITQSL-----RNGLREDK-----VIGTCPEC-ESRLMVRRSKRGSRFIGCDGYPDCTF 624
Query: 669 AVWLPGSVSEAAVTTNTC 686
++ LP S + VT C
Sbjct: 625 SLPLPKS-GQIIVTDKVC 641
>gi|282165112|ref|YP_003357497.1| DNA topoisomerase I [Methanocella paludicola SANAE]
gi|282157426|dbj|BAI62514.1| DNA topoisomerase I [Methanocella paludicola SANAE]
Length = 704
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 189/679 (27%), Positives = 313/679 (46%), Gaps = 50/679 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L V EK A+ +A +L + R +G S +YE + + ++GH++
Sbjct: 3 LIVTEKNITARKIAQLLLGSAKERKVDGVS----VYEGD--------DTAVVGLSGHIVN 50
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF + Y W S P DL A + K I L++ A+ + + D DREGE
Sbjct: 51 IDFPDEYNNWQSTAPKDLIWANTEMRYTQKK--IATALKKLAKEATHVTIATDFDREGEL 108
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + + RAR+SA+ +EI A N V + A A +ARQ+IDL G
Sbjct: 109 IGVEAYHIIKDAAPAAKFDRARYSAITRQEIEHAFANTVPIDFDLAAAGEARQKIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TR+ ++ N LS G Q P L +V+R +I+A +W I
Sbjct: 169 AALTRYISLTCGRLG--------NSFLSVGRVQTPLLALIVDREKDIKAFTPTPYWEIYA 220
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYE--MCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ + E ++ GH + + E M T V +++ +++YPP P ST
Sbjct: 221 TFTNGE-----EFVAGHTGNRFTEKAKAEGIMARLGRTGKVADYKKEPRVEYPPIPFSTT 275
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
E RA+ S+ + M++AE+LY G+ISYPRT+ + + NL IV Q ++G
Sbjct: 276 EF-IRAAASIGFSAANAMRIAENLYVNGWISYPRTDNTVYPASLNLKEIVA-QFAGGEFG 333
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
YAQRLL+ ++ P G + HPPI+P S+ +S D +++YELVV F A
Sbjct: 334 KYAQRLLEQSS---FKPTRGKKETTDHPPIYPVA-SARKSEIKADEWRVYELVVSRFFAT 389
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
++ PA V +++ GE F +G ++ Y Y + ++P GQ+
Sbjct: 390 LAPPAEYEVRNVCVDVNGERFKATGSMLSTPGYRLYYPYGMAKEELLPELSVGQELAVKN 449
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+D +T+PP + L+ M+ G+GT +T H+ I+KL R Y + PTN
Sbjct: 450 AAMDEKLTKPPVRYGQGKLVKMMEDLGLGTKSTRHEAIQKLYARNYVHGNPPV---PTNT 506
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
A+V + + KP++ S +ESDM ++ G + V+ ++ F D
Sbjct: 507 AFAVVGALEKYADLITKPDMTSRLESDMDSIAEGKIKEEAVVQESQGMLETIFDDLDKNH 566
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
+ E + + G + + G +C C + ++ ++KS+ G +GC +P+C
Sbjct: 567 NDIREVL------YEGLREDRRIG----KCPSCGK-DLYVRKSKKGGRFIGCEGYPECNF 615
Query: 669 AVWLPGSVSEAAVTTNTCN 687
+ LP + VT C+
Sbjct: 616 ILPLP-RMGTIIVTEKNCD 633
>gi|448319100|ref|ZP_21508606.1| DNA topoisomerase I [Natronococcus jeotgali DSM 18795]
gi|445596714|gb|ELY50798.1| DNA topoisomerase I [Natronococcus jeotgali DSM 18795]
Length = 842
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 190/691 (27%), Positives = 315/691 (45%), Gaps = 65/691 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS RE +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILSGGTYDSTRENGV---NVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K+DI TL ARR + + + D DREGE
Sbjct: 52 VDFPAEYSDWRDVEPVELIDAEVEKTAT--KEDIVATLRILARRAERVAIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVREVDADVPIRRVRFSSITENEVKSAFEEPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EI+A + E +W +
Sbjct: 170 AALTRFLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIEAFDPETYWELFA 221
Query: 251 SHKSEEGTATFSWMRGH-------------------------LFDYTSAVIIYEMCVQEP 285
K E G +++ A +YE
Sbjct: 222 DLKKSEAQRASETSSGEQPRDDETTFEAQYFYRDEDDNEAERVWEEAQADEVYETLSSRD 281
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
ATV V ++ + PP P +T + RA+ S++ M +AEDLY AG+I+YPRT+
Sbjct: 282 AATVVDVNRRTRTDAPPAPFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYITYPRTDN 340
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFS 404
+ + +++ + H + G A LL+ A R P G + HPPIHPT +
Sbjct: 341 TVYPDDLDPEELLEAFVDHSELGDAADALLE--ADEIR-PTEGDEETTDHPPIHPTGEIP 397
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV 464
+ D ++LYELVVR F A V+ PA V + +G+ ++ Y DV
Sbjct: 398 TRGGDVDDDEWELYELVVRRFYATVADPAEWEHLKVVAEVDDARLKANGKRLVEPGYHDV 457
Query: 465 YRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHD 524
Y + + +P ++ + L+ T+PP ++ L+ M+ G+GT +T H+
Sbjct: 458 YPYFNTSENYVPDVETDEKLAIEDVELEEKETQPPRRYGQSRLIETMEDLGLGTKSTRHN 517
Query: 525 HIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNK 584
++KL DR Y D PT + A+V ++ + + + +E+DM ++ G
Sbjct: 518 TLEKLYDRGYIESDPPR---PTRLAMAVVDAAENYADRVVSEGMTAQLEADMDAIASGEA 574
Query: 585 SKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQES 644
DV + + ++ F A L + E +G R S +D++ + C C E
Sbjct: 575 DLEDVTDDSREMLEEIF--ANLADSR--EEIGDHL-RKSLKDDKR-----LGPCPDCGE- 623
Query: 645 NMVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
++++++SR G+ +GC +P C + LP +
Sbjct: 624 DLLVRQSRHGSYFIGCDGYPDCEYTLPLPST 654
>gi|268325082|emb|CBH38670.1| DNA topoisomerase I [uncultured archaeon]
Length = 681
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 187/678 (27%), Positives = 315/678 (46%), Gaps = 46/678 (6%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+ EK + AK +A ILS + ++ + +EF+ + + ++GH+ LD
Sbjct: 5 ITEKGTTAKKIAAILS---NGKAKKKKIGGIDAHEFDEKV--------VIGLSGHVFRLD 53
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIA 132
F + Y W DP L A + KKDI KTL + A++ ++ + D DREGE I
Sbjct: 54 FPDSYNNWSKVDPYKLIDAKIVTVAL--KKDIVKTLGQIAKKADYITVATDYDREGELIG 111
Query: 133 FEVIEVCRAVNCHLVLRRARFSALIDREIHQ--AVQNLVDPNQWFADAVDARQEIDLRIG 190
E + + +N L + R R+SA+ +++I A ++ VD N A + + RQ IDL G
Sbjct: 112 VEALNNIKKINPELKVDRMRYSAITEKDIKDSFAARSEVDYN--LAASAEVRQIIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TRF ++ S + S G Q PTL +VE+ EI ++W ++
Sbjct: 170 ASLTRFISL--------SANRLGDGFFSVGRVQSPTLALLVEKEKEIAKFVPRKYWELHA 221
Query: 251 SHKSEEGTA-TFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
K+ G + ++ A + + + ++ + +++ PP P T
Sbjct: 222 KLKTGNGEIFDVTHKTAKFWEKDEAEVAKARIEAAKSGFIRTLKTKLRVEKPPTPFDTTT 281
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
RA+ + + M +AE LY G ISY RT+ ++ +L +VQ H ++G
Sbjct: 282 F-IRAASAISYTPKRLMAIAEGLYLGGLISYHRTDNTTYPDTLDLKTLVQMFQKHKEFGK 340
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A+ LL P +G HPPIHP + + + +D +K+YELVVR FLA +
Sbjct: 341 HAKLLLTKKE---LKPTAGKKKTTDHPPIHPVA-ETTKDKLEKDEWKVYELVVRRFLATL 396
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
S A +T V I E + GR++ + +L +Y ++ LVIP ++ +
Sbjct: 397 SDAAKWEDTNVTAEIGDEPLTAKGRLLKEQGFLAIYPYQKKEELVIPQLKEDEKVDLEHI 456
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
L T+PP +S+A L+ MD G+GT +T H+ I KL DR Y PT
Sbjct: 457 ELVEKETKPPNRISQAGLIKKMDDLGLGTKSTRHEIIGKLYDRTYV---QGNPAKPTEKA 513
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
AL+ + + K + +E +M E+S G + K +V + +K F D + +
Sbjct: 514 VALIDSLEKYAALITKSEMTKTLELEMDEISEGKRKKKEVAEDSRNMLKDVFADLKKNRS 573
Query: 610 KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
++ ++ ++ A ++V C C +S+++L SR G VGC +P C +
Sbjct: 574 EIGNSL----------KEAVRADKIVGSCPKC-DSDLLLLSSRRGKRFVGCSNYPTCEFS 622
Query: 670 VWLPGSVSEAAVTTNTCN 687
+ +P S VT + C+
Sbjct: 623 LPMPKS-GRVVVTEDKCD 639
>gi|448444924|ref|ZP_21590071.1| DNA topoisomerase I [Halorubrum saccharovorum DSM 1137]
gi|445685679|gb|ELZ38029.1| DNA topoisomerase I [Halorubrum saccharovorum DSM 1137]
Length = 864
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 210/766 (27%), Positives = 335/766 (43%), Gaps = 92/766 (12%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS RE N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATAERE-----NDVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L + AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKEPTQEG--IVAALRKLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ + E+ +A N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDAPIDRVRFSSITENEVREAFANPDELDFDLAAAGEARQVIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPESYWELYG 225
Query: 251 SHKSEEGT---ATFSWMRGH------LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+ G A + ++ ++D +A ++ E A V VR++ + P
Sbjct: 226 NLTKSGGDPFEARYFYLNDEGNEAERVWDGDAAEVLTEALDAAEDAVVDDVRRRTRTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPDDLEPRELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A+ LLD P G + HPPIHPT S S+D +++YEL+
Sbjct: 345 SAASTFGTDAKSLLDREE---IEPTEGDEETTDHPPIHPTGELPSASDLSEDEWEVYELI 401
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEV--------------------------------F 449
VR FLA ++PA V GE
Sbjct: 402 VRRFLATCAEPATWERLRVVALANGEATPIAERADGLAALRDPDEATGPGDLAADGGLRL 461
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ T D+ T+PP ++ L+
Sbjct: 462 KANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLALTDRRTDAKETQPPRRYGQSRLIE 521
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K G+GT AT H ++KL DR Y D PT + EA+V ++ + +
Sbjct: 522 EMEKRGVGTKATRHRTLEKLYDRNYIESDPPR---PTRLAEAVVEAAEEFAEHIVSEEMT 578
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM+ ++ G K +V + + F D + EA+G ++
Sbjct: 579 AQLERDMQAIAAGEKEYEEVTEESRELLDRVFDDLTESR----EAVGDHLQK------SL 628
Query: 630 AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
A + + C C E +++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 629 KADKTLGPCPECGE-DLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLILDETCE-- 684
Query: 690 TPGPVYLIQFKFRQHEIPPGFNVNHLGCIG-GCDETLRQLIEICGT 734
+ RQ ++ G GC DE Q E+ GT
Sbjct: 685 --------EHDLRQVKMLAGRKTFVHGCPQCKADEADEQEDEVIGT 722
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 606 LKKVKLLEAMGIFFE---RWSGGEDQQAAGEVVRQCGICQESN---MVLKKSRDGNLMVG 659
L++VK+L F + E + EV+ C C E + + +K+ R G+ +VG
Sbjct: 688 LRQVKMLAGRKTFVHGCPQCKADEADEQEDEVIGTCPECGEEHGGELAIKRLRSGSRLVG 747
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
C +P C ++ LP E VT TC
Sbjct: 748 CTRYPDCDYSLPLP-RRGEIEVTDETCE 774
>gi|410670057|ref|YP_006922428.1| DNA topoisomerase I [Methanolobus psychrophilus R15]
gi|409169185|gb|AFV23060.1| DNA topoisomerase I [Methanolobus psychrophilus R15]
Length = 741
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 184/677 (27%), Positives = 312/677 (46%), Gaps = 39/677 (5%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK AK +A IL+++ ++++ R YE+ G+ + + ++GH+++
Sbjct: 3 LIIAEKHIAAKRIASILAQD---KLKQVRVSGVDTYEYG---TGEDRKVFI-GLSGHIVK 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF + Y W + +L A V + K I L++ + + D DREGE
Sbjct: 56 LDFPKAYNNWQKVEAKELIDAQVITTSTQVK--IVSALKKLGKEATKATIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E +++ ++VN + R +SA+ +EIH +N + ADA +RQ IDL G
Sbjct: 114 IGVEAVDILKSVNPDIEFDRVHYSAITPKEIHDTFENPAKIDFSLADAGHSRQVIDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TR+ ++ N+ LS G Q PTL +VER E A + ++W ++
Sbjct: 174 ASLTRYISLAAGRLG--------NMFLSVGRVQSPTLALIVEREKERDAFVARKYWELSA 225
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
S ++ +G + + F + + + + TA V+ + K P P +T E
Sbjct: 226 SLRTRKGEVFVAEHKTSRF-WEKEEVDSALSALKDTAVVSSITTSTKTDKQPTPFNTTEF 284
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
AS +S M +AE LY GFISYPRT+ + +L ++ P + Y
Sbjct: 285 ISAASTMGYTAS-SAMNIAESLYMNGFISYPRTDNTVYPESIDLRAQIEIFTKGP-FKEY 342
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
A++LL + P G + HPPI+P + +S S+ +KLYELVVR F A +
Sbjct: 343 AEKLLAMKELV---PTRGKKETTDHPPIYPASLAK-KSELSEQEWKLYELVVRRFFATFA 398
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
+PA +I GE F +G ++ + Y + + ++P G + +
Sbjct: 399 EPAEWETIKARFDITGEEFKANGARLVKPGWRWYYPYNAPEDRLLPALAEGDELEVLSKD 458
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
+ T+PP + L+ M++ G+GT AT H+ I KL R Y PT
Sbjct: 459 VAEKETQPPGRYGQGRLIKLMEELGLGTKATRHEIISKLYSRAYI---HGNPLQPTKTAF 515
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK 610
A+V + + KP++ S +E DM ++ GN + +VL + + + F D +
Sbjct: 516 AVVESLEKFAPTISKPDMTSKLEEDMDRIAEGNIPEDEVLKESREMLFSVFRDLEENRDN 575
Query: 611 LLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAV 670
+ E++ R ED+ ++ C C MV+ +S+ G +GC +P+C ++
Sbjct: 576 ISESL-----RAGLREDK-----IIGVCPECSSKLMVM-RSKKGGRFIGCEGYPECNFSL 624
Query: 671 WLPGSVSEAAVTTNTCN 687
LP + VT TC+
Sbjct: 625 PLPRG-GKVIVTDKTCD 640
>gi|154150402|ref|YP_001404020.1| DNA topoisomerase [Methanoregula boonei 6A8]
gi|153998954|gb|ABS55377.1| DNA topoisomerase [Methanoregula boonei 6A8]
Length = 942
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 193/672 (28%), Positives = 309/672 (45%), Gaps = 58/672 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK A +A IL+ G R+ E + Y F +I + GH++E
Sbjct: 3 LIVAEKNISAHRIAQILA--GGTRVIEKKDAGVSTYSFGDTI--------TVGLRGHVVE 52
Query: 71 LDFDERYRKWHS--CDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+DF+ Y W S P L A K VP +K+ I +++ AR + + D D EG
Sbjct: 53 VDFEPGYENWRSEKYTPRSLIDAKTIK-VPTEKR-IVSLVQKLARHADRVTIATDFDTEG 110
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E I E E+ RAVN ++ + RARFSA+ +EI A N D + A A +ARQ IDL
Sbjct: 111 ELIGKEAYELVRAVNKNVKIDRARFSAITAQEIGSAFANTTDLDFALAAAGEARQSIDLM 170
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GAS TRF ++ K N +LS G Q PTL +V+R EI+ E++W +
Sbjct: 171 WGASLTRFISLAAKR--------GGNNILSVGRVQSPTLSMIVDREKEIEKFVPEKYWQL 222
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ G D +A + + +EP VT+VR+ K P P T
Sbjct: 223 GLLTEKAGEQIEARHTNGRFKDQKAAELARDRT-KEPL-VVTEVREGTKQDRSPSPFDTT 280
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP--- 365
A+R S+ + M++AE+LY G+ISYPRT+ + + +L+G++ P
Sbjct: 281 TYIVAAAR-LGFSAANAMRIAEELYMNGYISYPRTDNTVYPASLDLNGVLATIRNSPFTK 339
Query: 366 --DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
DW ++ H P G HPPI+PT ++ E D +++YELV+R
Sbjct: 340 DVDW------IISHRRA---EPTRGKKSSTDHPPIYPTGVATREG-IGDDAFRIYELVLR 389
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
FLA ++ A+ V GE ++ +G ++L + VY F ++P +V G++
Sbjct: 390 RFLATLAPDALWKTLKVNFEAGGETYTVTGGLLLEPGWHAVYPFSEAKETILPAFVTGEK 449
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ L+ T PP +++ L+ M++ G+GT +T H+ I +L+ R Y
Sbjct: 450 LPIRKVNLEEKETLPPARYTQSKLIQRMEELGLGTKSTRHEVIARLVSRKYI---EGNPL 506
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT +G + + + KP + +ES M+++ +++ DV+A + F
Sbjct: 507 RPTLVGRVVTEALEQNADTITKPEMTQTIESHMQQIKESKRTRDDVIAESRSMLHKAF-- 564
Query: 604 ARLKKVKLLEAMGIFFERWSGGE--DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
LEA E+ G + D+ A + +C C + +K R +GC
Sbjct: 565 ------DQLEAN----EQVIGNDIRDRTAEELNLGRCPACG-GTLAIKHMRGSTQFIGCS 613
Query: 662 AFPQCRNAVWLP 673
+P+C + LP
Sbjct: 614 RYPECTFNIGLP 625
>gi|222478697|ref|YP_002564934.1| DNA topoisomerase type IA central domain protein [Halorubrum
lacusprofundi ATCC 49239]
gi|222451599|gb|ACM55864.1| DNA topoisomerase type IA central domain protein [Halorubrum
lacusprofundi ATCC 49239]
Length = 864
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 199/709 (28%), Positives = 321/709 (45%), Gaps = 86/709 (12%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS RE N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATAERE-----NDVNVYKWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L AP+ K ++ I L + AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPITKEPTQEG--IVAALRKLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ D E+++A N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDAPIDRVRFSSITDNEVNEAFANPDELDFDLAAAGEARQVIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EI+A + E +W +
Sbjct: 174 AALTRFLSLSARQLGED--------FISVGRVQGPTLKLIVDREREIKAFDPEAYWEL-Y 224
Query: 251 SHKSEEGTATFSWMRGHLFDYTS----------AVIIYEMCVQEPTATVTKVRQQEKLKY 300
+ ++ G F +L D + A ++ E A V VR++ +
Sbjct: 225 GNLTKSGGDPFEARYFYLNDEGNEAERVWNGDVAEVLTEAFDAADEAVVDDVRRRTRTDD 284
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PP P +T RA+ S++ M +AEDLY AG+++YPRT+ + + +++E
Sbjct: 285 PPTPFNTTAF-IRAAGSLGHSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLDPRELIEE 343
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
+G A+ LL+ P G + HPPIHPT S S+D +++YEL
Sbjct: 344 LSVASTFGKDAKSLLEQEE---IEPTEGDEETTDHPPIHPTGELPSASDLSEDEWEVYEL 400
Query: 421 VVRHFLACVSQPAV------------GAETIVE--------------------INIAGEV 448
+VR FLA ++PA A I E + G
Sbjct: 401 IVRRFLATCAEPATWERLRVVALANDEATAIAERADGLAALRNPEEASGPGDLVADGGLR 460
Query: 449 FSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLL 508
+G+ +L Y DVY + S ++P G+ T D+ T+PP ++ L+
Sbjct: 461 LKANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLALTDRRTDAKETQPPRRYGQSRLI 520
Query: 509 SCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNL 568
M+K G+GT AT H ++KL DR Y D PT + EA+V ++ + +
Sbjct: 521 EEMEKRGVGTKATRHRTLEKLYDRNYIESDPPR---PTRLAEAVVEAAEEFAEHVVSEEM 577
Query: 569 RSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQ 628
+ +E DM+ ++ G K +V + + F D L E+ R + G+
Sbjct: 578 TAQLERDMQAIAAGEKGYDEVTEASRELLNRVFDD-------LTES------REAVGDHL 624
Query: 629 QAAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
Q + + + G C E S+++++KSR G+ VGC +P C + LP S
Sbjct: 625 QKSLKADKTLGPCPECGSDLLVRKSRQGSYFVGCDGYPDCEYTLPLPSS 673
>gi|88602302|ref|YP_502480.1| DNA topoisomerase [Methanospirillum hungatei JF-1]
gi|88187764|gb|ABD40761.1| DNA topoisomerase I [Methanospirillum hungatei JF-1]
Length = 931
Score = 248 bits (633), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 193/677 (28%), Positives = 318/677 (46%), Gaps = 48/677 (7%)
Query: 11 LNVAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L +AEK A +A ILS K++ +EG +Y F I + GH++
Sbjct: 3 LIIAEKNIAANRIAQILSGKDKVSAKKEGGVN---VYTFGDKIS--------IGLRGHVV 51
Query: 70 ELDFDERYRKWHSCD--PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
E+DF E Y W S + P L A K E I K + + A++ + + D D E
Sbjct: 52 EVDFVEGYTNWRSQERPPRSLIDAETIKRPTEPA--IVKLIHKIAKKANRVTIATDFDTE 109
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I E E+ RAVN + + RARFSA+ EI++A D + A A +ARQ +DL
Sbjct: 110 GELIGKEAYELVRAVNPKVPIDRARFSAITKEEINRAFSEPSDLDFDLAAAGEARQVVDL 169
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
GAS TRF ++ K + +LS G Q PTL +V+R EI++ E +W
Sbjct: 170 IWGASLTRFISLAAKRGGGN--------ILSVGRVQSPTLAMIVDREKEIESFIPEPYWE 221
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I+ + + + + G D A Y ++P VT+V++ +++ P P T
Sbjct: 222 ISLTTEKDGQSIIARHAEGRFTDKKLADAAY-AGTKDPL-VVTEVKEGKRVDRAPTPFDT 279
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
+ A+R S+ + M+VAE+LY GFISYPRT+ + NL I+ +
Sbjct: 280 TQFIVAAAR-IGYSAANAMRVAEELYMNGFISYPRTDNTIYPPSLNLDNILTTL----EK 334
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
+A+ + P G HPPIHPT ++ E +++KLYELVVR FLA
Sbjct: 335 TKFARDVAWVRKNRRTKPTEGKKSSTDHPPIHPTGVATEEQLG--ENWKLYELVVRRFLA 392
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
+S A A + ++ G+ + +G + + VY + ++P G++
Sbjct: 393 TLSPDAEWATMRIGMDATGQNYVATGSRLTEAGWRTVYPYSEAKDSILPVVKKGEKLKIQ 452
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
L L+ T+PPP S++ L+ M++ G+GT +T H+ I+KL+ R Y PT
Sbjct: 453 DLNLEEKQTQPPPRYSQSKLIQVMEELGLGTKSTRHEVIQKLISRKYI---EGNPLRPTL 509
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+G+A+ + + +P++ +E M+ + V NKS+ V+ + + + F +
Sbjct: 510 VGKAVTESLEAHASTITRPDMTQKLEQAMEAIKVRNKSRDGVVDDSRKMLHQVFDE---- 565
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
L + + G D++ + C +C + + +K G+ +GC +P C
Sbjct: 566 ---LEPNEAVIGQEIMGQTDEEL---TIGPCPVCGKDLRIRRKG--GSQFIGCNGYPDCT 617
Query: 668 NAVWLPGSVSEAAVTTN 684
+ LPG++ +AV T
Sbjct: 618 CNISLPGTMWGSAVRTK 634
>gi|345006355|ref|YP_004809208.1| DNA topoisomerase [halophilic archaeon DL31]
gi|344321981|gb|AEN06835.1| DNA topoisomerase [halophilic archaeon DL31]
Length = 871
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 187/698 (26%), Positives = 317/698 (45%), Gaps = 66/698 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L V EK + A+ +A ILS R N + + + + + ++GH++
Sbjct: 3 LIVTEKDNAARRIADILSDGTA-----DAERVNGVNVYGWGGK------RVIGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W + +P +L APV ++ I L A+ +++ D DREGE
Sbjct: 52 VDFPPEYDDWRNVEPHELIDAPVDTQATQEG--IVAALRRLAKDANRVIIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R VN + + RARFS++ DRE+H A N + + A A +ARQ +DL G
Sbjct: 110 IGKEAFDLVRDVNETIPVERARFSSITDREVHNAFDNTGEIDFNLAAAGEARQIVDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EIQA +S+++W +
Sbjct: 170 AALTRFLSLSAGQLGDD--------FISVGRVQGPTLKLLVDREREIQAFDSDDYWELYA 221
Query: 251 SHKSEEGT--ATFSWMRG------HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
EEG A + ++ ++D +A + +E TA V +V ++ + PP
Sbjct: 222 DLTGEEGAFEAQYFYLDDDGTEARRVWDEGAADVAFEALEAAETADVEEVSRRTRTDDPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AE+LY AG+I+YPRT+ + +E +
Sbjct: 282 APFNTTQF-IRAASALGYSAQRAMSMAEELYTAGYITYPRTDNTVYPEDLE----PEELL 336
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE--SRWSQDHYKLYEL 420
+ + + + P G + HPPIHPT GE + D ++++EL
Sbjct: 337 DAFTETFFGESVEELLEQEEIEPTEGDEETTDHPPIHPT----GEMPTDLDDDEWEVFEL 392
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEV-----------FSTSGRVILAKNYLDVYRFES 469
VVR F A + A V I GE +G+ +L + Y VY + S
Sbjct: 393 VVRRFFATCAPSATWEHLRVVAGIEGEASLPSGGDAGLSLKANGKRLLEEGYHSVYPYSS 452
Query: 470 WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKL 529
+P G + L++ T+PP ++ L+ M+ G+GT +T H+ I+KL
Sbjct: 453 ADETFVPDVSQGDALAVSEQRLEAKETQPPRRYGQSRLIETMESMGVGTKSTRHNTIEKL 512
Query: 530 LDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV 589
DR Y D PT + A+V ++ + + + +E+DM+ ++ G K +V
Sbjct: 513 YDRNYVENDPPR---PTQLAHAVVEAAEEFADLIVSEEMTAQLEADMRSIAEGEKGFDEV 569
Query: 590 LANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK 649
+ + F D R + E +G + A +++ C C S+++++
Sbjct: 570 TEESRELLGRVFEDLRNSR----EEVGDHLRK------SMKADKIIGPCPECG-SDLLVR 618
Query: 650 KSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
KSR G+ VGC +P C + LP S + + + C
Sbjct: 619 KSRYGSYFVGCDGYPDCEYTLPLP-STGKPLILDDVCE 655
>gi|452206874|ref|YP_007486996.1| DNA topoisomerase I [Natronomonas moolapensis 8.8.11]
gi|452082974|emb|CCQ36256.1| DNA topoisomerase I [Natronomonas moolapensis 8.8.11]
Length = 849
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 190/684 (27%), Positives = 314/684 (45%), Gaps = 48/684 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L V EK + A+ +A ILS +G + N+ + N G ++GH++
Sbjct: 3 LIVTEKDNAARRIAEILS--------DGSASTNRQFGVNVYRWGD---TRCVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W P +L A V K +P +++I +TL+ A + + D DREGE
Sbjct: 52 VDFPPEYADWRDVQPVELVDADVVK-MPT-QENIVRTLQGLAADADRITIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ + E+ +A N + A A +ARQ IDL G
Sbjct: 110 IGKEAYELARE-ETDAPIDRVRFSSITENEVREAFSNPEALDFDLAAAGEARQVIDLLWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI-- 248
A+ TRF ++ K F D +S G Q P L +V+R EI+A + +++W +
Sbjct: 169 AALTRFLSLSAKQFGED--------FISVGRVQSPALKLIVDREREIRAFDPDDYWELFA 220
Query: 249 NCSHKSEEGTATFSWMRG-----HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+ + A + ++ +++ A +E A V VR++ + PP
Sbjct: 221 DLLKDGDAFEAQYFYLEDGNEAERVWEEADATEAFEQLQGAREAIVESVRRRRRTDEPPE 280
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T + AS +S++ M VAE+LY AG+I+YPRT+ + + ++ E
Sbjct: 281 PFNTTQYISSASS-VGLSAQKAMSVAEELYTAGYITYPRTDNTVYPDDLDPEALLDEFTD 339
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
H +G A LL A P +G + HPPIHPT S+D +++YELVVR
Sbjct: 340 HYLFGDDADSLLSADA---IEPTAGDEETTDHPPIHPTGEIPARDDLSEDEWEVYELVVR 396
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HF A V+ PA V + G +G+ +L Y +VY + S +P G+
Sbjct: 397 HFFATVADPAEWEHLKVVADANGCSLKANGKRLLEPGYHEVYPYRSTAENHVPDVDEGEI 456
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
T +++ T+PP ++ L+ ++ +GT +T H I+KL DR Y D
Sbjct: 457 LDVTEARIEAKQTQPPRRRGQSRLIEELESRSLGTKSTRHHTIEKLYDRGYIESDPPR-- 514
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + A+V + + + + +E+DM ++ G DV + F +
Sbjct: 515 -PTKLAMAVVEAAEKFADRIVDEGMTAKLEADMNAIADGETDLEDVTDESRAILGRIFEE 573
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAF 663
+ ++ E + + A + C C ES +++++SR G+ VGC F
Sbjct: 574 LHDSREEIGEHL----------RESMKADRTLGPCPDCGES-LLVRRSRQGSYFVGCDGF 622
Query: 664 PQCRNAVWLPGSVSEAAVTTNTCN 687
P+CR + LP + E VT +TC+
Sbjct: 623 PECRYTLPLPNT-GEPTVTDDTCD 645
>gi|222641861|gb|EEE69993.1| hypothetical protein OsJ_29901 [Oryza sativa Japonica Group]
Length = 729
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/493 (31%), Positives = 244/493 (49%), Gaps = 30/493 (6%)
Query: 150 RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSV 209
RA+FS++ +++I A+ NLV P++ A AVDARQEIDL+ F F+I
Sbjct: 19 RAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEIDLK------NFVLQFFPLFYI--- 69
Query: 210 TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLF 269
YGPCQ PTLGF V+RY +I + E+FW++ + W R LF
Sbjct: 70 --------RYGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTYVIKDGNEIQLEWDRKKLF 121
Query: 270 DYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVA 329
D+ V+ +M + VT + +E+ K P L+T+ L K AS + + M +A
Sbjct: 122 DFDVTVMFQKMVASDGILKVTDISVKEECKARPPGLNTVNLLKVASSALGIGPQTAMHLA 181
Query: 330 EDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGG 389
E LY GFISYPRTE+ ++ S + + +P W + LLD + P G
Sbjct: 182 ERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNPLWSNDVRTLLDTG---FVKPKQ-G 237
Query: 390 HDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVF 449
HD HPPI P + ++ E+ D ++LY+ + +HF+ VS T +E GE F
Sbjct: 238 HDAGDHPPITPMRLATEEA-LGTDAWRLYQYICQHFIGTVSPDCRYTRTSIEFTSGGETF 296
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
G + +K + + + + IP Y G + + G T PP LSE++L+S
Sbjct: 297 HCVGNRVTSKGFTSIMPWLAVSENNIPAYKKGDAVSIHKVDIYEGSTTPPDYLSESELIS 356
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K GIGTDA++ H+ + +R Y ++ R PT +G L+ GY + +L P++R
Sbjct: 357 LMEKNGIGTDASIPVHVNNICERNYVQVNSGRRLVPTPLGTTLIRGYQCIDADLCLPDIR 416
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE-RWSGGEDQ 628
+E + ++ G V+ + LQQ F+ VK +E M FE ++S D
Sbjct: 417 RFIEQQITLIAKGEADHLQVVQHVLQQ----FMKKYSYFVKKIENMDALFEAQFSPLAD- 471
Query: 629 QAAGEVVRQCGIC 641
+G ++ +CG C
Sbjct: 472 --SGRLLSKCGKC 482
>gi|374629454|ref|ZP_09701839.1| DNA topoisomerase I [Methanoplanus limicola DSM 2279]
gi|373907567|gb|EHQ35671.1| DNA topoisomerase I [Methanoplanus limicola DSM 2279]
Length = 935
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 204/710 (28%), Positives = 326/710 (45%), Gaps = 67/710 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNK-----IYEFNYSIRGQPCHMLMTSVT 65
L +AEK A+ +AG LS + G+ + K IY F+ + +
Sbjct: 3 LIIAEKNIAAQRIAGFLSSS-------GKPKTEKDNNVSIYRFDDKV--------ALGLR 47
Query: 66 GHLMELDFDERYRKWHS--CDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
GH++E+DF+E Y+ W S P L A + + P +KK I +++ +++ + + D
Sbjct: 48 GHVVEVDFEEGYKNWRSETHTPRTLIDAGIIRK-PTEKK-IVALIKKLSKKADLVTIATD 105
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
DREGE I E E+ R N + + RARFSA+ +EI A N + + A A +ARQ
Sbjct: 106 YDREGELIGKEAYEIVREANKKVPVNRARFSAITKQEISAAFDNPAEIDFDLAAAGEARQ 165
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
EIDL GAS TRF ++ K +N +LS G Q PTL +V+R EI
Sbjct: 166 EIDLVWGASLTRFISIAAKR-------GGKN-ILSVGRVQSPTLAMIVDREKEIGEFVPV 217
Query: 244 EFWTINCSHKSEEGTATFSWMRGH-LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W ++ SE+ F H FD +EP VT+ ++ + P
Sbjct: 218 PYWMLSII--SEKDKEQFEARHTHGRFDLKEEAESALSGTKEPVE-VTEKKEGSRTDKAP 274
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P T ASR +S+ + M+VAEDLY G+ISYPRT+ + ++ GI+ E
Sbjct: 275 APFDTTGYIVAASR-LGLSASNAMRVAEDLYMNGYISYPRTDNTVYPDSLDIKGILNEIK 333
Query: 363 G----HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
+W A + P G HPPIHPT ++ + + +K+Y
Sbjct: 334 KSFRRDTEWV---------IANIRDTPTKGKKTSTDHPPIHPTG-AAKPADLDEKSWKVY 383
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
EL+VR FLA +S A +N GE ++++G+ + + Y VY + V+P
Sbjct: 384 ELIVRRFLATLSPDARWKTLKYLLNAGGEEYTSTGQRLEYEGYRMVYPYSQAKEQVLPDL 443
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G++ L+ T+PPP S++ L+ M++ G+GT +T H+ I KL+ R Y
Sbjct: 444 SEGEKLPLVDTVLEEKETQPPPRYSQSKLIQQMEELGLGTKSTRHEVIGKLISRRYV--- 500
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
+ PT +G A+ + + KP++ +E M+E+ ++SK + + +
Sbjct: 501 EDNPLKPTQVGMAVTESLEKHATLITKPDMTKTIEDHMEEIKRSSRSKEEAVNESRGMLN 560
Query: 599 ACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMV 658
F D K EA+G D+ A +V +C +C SN++++ ++ V
Sbjct: 561 QIFDDLE----KNEEAIGEEI------MDRTAEERIVGKCPVCN-SNLMIRTTKGMAQFV 609
Query: 659 GCLAFPQCRNAVWLPGSVSEAAV--TTNTCNSCTPGPVYLIQFKFRQHEI 706
GC +P C + LP A+ N C+ V LI+ R EI
Sbjct: 610 GCTNYPDCSFNLNLPSVQWGKAIRDDDNICDQHNLHHVKLIRAGARPWEI 659
>gi|448481877|ref|ZP_21605192.1| DNA topoisomerase I [Halorubrum arcis JCM 13916]
gi|445821576|gb|EMA71365.1| DNA topoisomerase I [Halorubrum arcis JCM 13916]
Length = 865
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 200/721 (27%), Positives = 318/721 (44%), Gaps = 84/721 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATA-----ERMNDVNVYEWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ + E+ +A N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPESYWELTG 225
Query: 251 SHKSEEGT---ATFSWM------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
G A + ++ R ++D A ++ E ATV V ++ + P
Sbjct: 226 ELAKSGGDPFEARYFYLNDEGNERERVWDGDVAEVLTEALGAADAATVDDVDRRTQTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLEPAELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A LLD + P G + HPPIHPT S S D +++YEL+
Sbjct: 345 SAASTFGTDAASLLDGDDEI--EPTEGDEETTDHPPIHPTGELPSASDLSDDEWEVYELI 402
Query: 422 VRHFLACVSQPAV------------GAETIVE--------------------INIAGEVF 449
VR FLA + PA A I E + G
Sbjct: 403 VRRFLATCADPATWERLRVVALANGEATPIAETADGLAALRNPDDATKPADLVADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ + + T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLSLSDRATEGKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K +GT AT H I+KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRQLGTKATRHRTIEKLYDRNYVESDPPR---PTRLAEAVVEAAEEFADRIVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM ++ G K+ +V + + F D L E+ R + G+ Q
Sbjct: 580 AQLEQDMAAIAAGEKAYDEVTEASRELLSRVFDD-------LTES------REAVGDHLQ 626
Query: 630 AAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+ + + G C E ++++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 627 NSLKADKTLGPCPECGADLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLILDETCE 685
Query: 688 S 688
Sbjct: 686 D 686
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 603 DARLKKVKLLEAMGIFFE---RWSGGEDQQAAGEVVRQCGICQES---NMVLKKSRDGNL 656
D L+ VK+L F + E + EV+ C C E ++ +K+ R G+
Sbjct: 686 DHELRHVKMLAGRKTFVHGCPQCKADEADEQEDEVIGTCPDCGEEHGGDLAIKRLRSGSR 745
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+VGC +P C ++ LP E VT TC
Sbjct: 746 LVGCTRYPDCDYSLPLP-RRGEIEVTDETCE 775
>gi|432328623|ref|YP_007246767.1| DNA topoisomerase I, archaeal [Aciduliprofundum sp. MAR08-339]
gi|432135332|gb|AGB04601.1| DNA topoisomerase I, archaeal [Aciduliprofundum sp. MAR08-339]
Length = 747
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 172/599 (28%), Positives = 291/599 (48%), Gaps = 43/599 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+N+L +AEK + A+ +A ILS + +++GR+ Y +++S+ G + + GH
Sbjct: 1 MNILVIAEKRNAAQRIAKILSGGKFETVKKGRNVY-----YSFSMGGD--RYFVVPLRGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+++LD+ E+++ W+ D L K V E K + TL+ A+ L++ D DRE
Sbjct: 54 ILQLDYPEKFKSWNLKDLQKLVDEEPVKIVKE--KGVASTLKNLAKDADLLIIATDYDRE 111
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I E + + ++RA+FSAL ++EI A +NLVD N A A + RQ+IDL
Sbjct: 112 GELIGVEALSIS---GYRGKVKRAKFSALTEQEIKNAFENLVDVNYNLASAAETRQKIDL 168
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
GAS TRF ++ + D LS G Q PTL +V+R EI++ E +W
Sbjct: 169 AWGASLTRFISLASRRRGKD--------YLSVGRVQSPTLALIVKREREIESFEPTPYWN 220
Query: 248 INCS-HKSE----EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
I HK E A W A IYE V + + K PP
Sbjct: 221 IGAKFHKRRIFRGEHIANPIWKE------EEAKKIYEKIKDCNVGKVLEYVEGTKKIRPP 274
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T E A++ S+ M++AEDLY G+ISYPRT+ + N++ I++
Sbjct: 275 SPFNTTEFLSEATK-LGFSAARAMRIAEDLYMGGYISYPRTDNTVYPRSLNINAILKSL- 332
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+ +++ + + P G + K HPPI P + ++ + K+YEL+V
Sbjct: 333 ---EKSKFSEDVKKLQKERRKYPTRGKKESKDHPPIVPMR----GAKLDGERGKIYELIV 385
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A ++ E+ +I+I E+F + GR IL + + Y + + + +P G+
Sbjct: 386 RRFFATLAPDMEYEESTAKISILDEIFVSKGRRILNEGWHYYYPYSKFEEIPMPRLKEGE 445
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ + + T+PP +++ LL M+K +GT +T + I+KL DR Y
Sbjct: 446 EIRVKGVEIVRKETKPPSRYTQSSLLKEMEKLNLGTKSTRAEIIQKLFDRGYV---RGNP 502
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT++G+AL+ + ++ KP++ + +E DM + G+ S V+ + +K+
Sbjct: 503 IRPTDLGKALIDSLEKNKVDVVKPDMTAKLERDMDRIEEGSVSGDYVVKESREMLKSIL 561
>gi|327400378|ref|YP_004341217.1| DNA topoisomerase I [Archaeoglobus veneficus SNP6]
gi|327315886|gb|AEA46502.1| DNA topoisomerase I [Archaeoglobus veneficus SNP6]
Length = 667
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 191/664 (28%), Positives = 304/664 (45%), Gaps = 49/664 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A IL + + G S Y+ + + + GH++E
Sbjct: 4 LIITEKHNTARRIASILFNDVKQLKKYGVSYYH----------SPSSNAYVVGLKGHIVE 53
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF + Y W + L A + K V E K I + L+E AR + + D DREGE
Sbjct: 54 LDFPKEYNSWKNVPLRSLLRAELVKEVKE--KGIARLLKELAREVDRVTVATDYDREGEL 111
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FE +E+ + VN + + RA++SA+ +I +A N + A A + RQ IDL G
Sbjct: 112 IGFEALEIVKQVNPDVKVDRAKYSAITPADIKKAFSNPSKVDINLAKAAETRQRIDLIWG 171
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A TR I S R+ LS G Q PTL +VER EI+ +W I
Sbjct: 172 AVLTRL-------ISISSGRMGRDF-LSVGRVQSPTLRLIVEREKEIENFRPTPYWEIVA 223
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ-EPTATVTKVRQQEKLKYPPYPLSTIE 309
+ E + H+ +T + TA V ++E+ + P P +T E
Sbjct: 224 EFCNGE-----CFTAKHVERFTDVAKAKAAFKKIGNTAAVRTFEKKERKEARPTPFNTTE 278
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
+ AS++ MS + M VAE LY G+ISYPRT+ + NL I + + D+
Sbjct: 279 FLREASKF--MSPDRAMNVAETLYMNGYISYPRTDNTIYPPTLNLKAIATSFL-NSDFEK 335
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
A+ +L + P G + K HPPI+PT + + S++ + +YELVVR FLA +
Sbjct: 336 EAKIVLSQPSI---KPSRGKKESKDHPPIYPTAVAK-KGELSKEEWTIYELVVRRFLATL 391
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
+ A+ VEI+ GE+F +GR +L+ + +Y + + IP GQ
Sbjct: 392 APEAIWEVKRVEIDANGELFRATGRRLLSPGWRAIYIYSKAEEVSIPDLTVGQILRIKNK 451
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
L T+PP + +L+ M+K G+GT +T H+ IKKL R Y + PT
Sbjct: 452 ELLEKETKPPGRYTTGNLIRIMEKLGLGTKSTRHEIIKKLYSRKYVYGNP---LRPTQTA 508
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
A++ + P++ S +E DM ++ G S +V+ ++ FLD L +
Sbjct: 509 FAVIEALKSNAETITLPDMTSKLEKDMDAIAEGKLSDEEVVEESVR-----FLDEILSNI 563
Query: 610 KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
+ E E G + + G+ +CG +V++K++ +GC +P C
Sbjct: 564 DVKELSKSLRE---GVKKDKVVGKCP-ECG----RELVIRKTKGKKRFIGCSGYPACSFT 615
Query: 670 VWLP 673
+ LP
Sbjct: 616 LPLP 619
>gi|383320621|ref|YP_005381462.1| DNA topoisomerase I [Methanocella conradii HZ254]
gi|379321991|gb|AFD00944.1| DNA topoisomerase I [Methanocella conradii HZ254]
Length = 706
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 187/680 (27%), Positives = 316/680 (46%), Gaps = 52/680 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L V EK A+ +A IL K + +G S Y + + ++GH++
Sbjct: 3 LIVTEKNITARKIAQILLKKVKEKKVDGVSVY------------EDGDTAVIGLSGHIVN 50
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W + P +L A + K I L++ A+ + + D DREGE
Sbjct: 51 IDFPAEYNNWQNVSPRELIWAKAETRYTQKK--IVSALKKLAKEASRVTIATDFDREGEL 108
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + + N ++ RAR+SA+ EI A N V + A A +ARQ+IDL G
Sbjct: 109 IGVEAYNIIKDANPSVIFDRARYSAITKPEIEHAFANTVPLDFNLAAAGEARQKIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ N LS G Q P L +V+R +I++ +W +
Sbjct: 169 AALTRFISLTCGRLG--------NSFLSVGRVQTPLLALIVDREKDIKSFVPTPYWELYA 220
Query: 251 SHKS-EEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+ EE TA + R A++ + V + +++ + +YPP P ST E
Sbjct: 221 TFSDGEEFTAGHAGNRFAEKAKAEAILARLGRI----GKVVEFKKEPRPEYPPIPFSTTE 276
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
RA+ S+ + M++AE+LY G+ISYPRT+ + S NL V + IG ++
Sbjct: 277 F-IRAAAGIGFSAANAMRIAENLYVNGWISYPRTDNTVYPSSLNLKEAVSQFIGG-EFDK 334
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
YAQ+LL+ P G + HPPI+P +S +S D +++YELVV F A +
Sbjct: 335 YAQKLLEQGE---FKPSRGKKETTDHPPIYPVANAS-KSDLKADEWRIYELVVSRFFATL 390
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
+ PA I++ GE F G +++A + Y + ++P G++ +
Sbjct: 391 APPAEWEVRSACIDVDGEKFKAGGSLLVAPGWRLYYPYGMPKEEMLPELKVGEELKVKDV 450
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+D +T+PP + L+ M+ G+GT +T H+ I+KL R Y + PTN
Sbjct: 451 RIDEKLTKPPVRYGQGKLVKMMEDLGLGTKSTRHEAIQKLYARNYVHGNPPV---PTNTA 507
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF--LDARLK 607
A+V + + KP++ S +E+DM +++ G + DV+ ++A F LD
Sbjct: 508 FAVVGALEKYADPITKPDMTSRLEADMDDIAEGKIKEEDVVKESQGMLEAIFDKLDKNQN 567
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
+++ + G+ ED+ ++ +C C + +++++KS+ G +GC +P C
Sbjct: 568 EIRSVLYDGL-------REDK-----LIGKCPNCGK-DLLVRKSKKGGRFIGCDGYPDCS 614
Query: 668 NAVWLPGSVSEAAVTTNTCN 687
+ LP VT C+
Sbjct: 615 FILPLP-RAGTVVVTDKACD 633
>gi|254167954|ref|ZP_04874802.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|289596012|ref|YP_003482708.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|197622997|gb|EDY35564.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|289533799|gb|ADD08146.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
Length = 747
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 170/596 (28%), Positives = 284/596 (47%), Gaps = 37/596 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+N+L +AEK + A+ +A ILS + I++GR+ Y YS + + GH
Sbjct: 1 MNILVIAEKRNAAQRIAKILSGGRYETIKKGRNAY-------YSFTKGKDRYFVVPLRGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
++ +D+ +++++W D L K + E K I L A+ L++ D DRE
Sbjct: 54 ILHMDYPDKFKRWSLGDLQRLVDEEPIKIIKE--KGIANILRTLAKDADMLIIATDYDRE 111
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I E + + N ++RA+FSAL +REI A NLVD N A A + RQ+IDL
Sbjct: 112 GELIGVESLSI---TNFKGPVKRAKFSALTEREIENAFSNLVDVNYNLASAAETRQKIDL 168
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
GAS TRF ++ D LS G Q PTL +V+R EI+ +W
Sbjct: 169 AWGASLTRFISLASSRRGKD--------YLSVGRVQSPTLALIVKREKEIENFVPTPYWN 220
Query: 248 INCSHKSEEGTATFSWMR--GHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
I FS M + + +YE +A V Q+++ PP P
Sbjct: 221 IKGLFFKRR---NFSGMHISNPFWKEEEVMEVYEKVKDTKSAKVLDFVQEDRKIRPPIPF 277
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T E A++ S+ M++AE+LY G+ISYPRT+ + +++ I++
Sbjct: 278 NTTEFLSEATK-LGFSAAKAMRLAEELYMGGYISYPRTDNTVYPKTLSINSILKSL---- 332
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+ + + L R P G + HPPI PT+ ++ E D K+YELVVR F
Sbjct: 333 EKSKFKEEALKLQKERRRYPTRGKKESTDHPPIVPTRGANLEG----DKGKIYELVVRRF 388
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
+A ++Q E+ V++ + E+F G+ ++ + +L Y + + IP G +
Sbjct: 389 MATLAQDLEYRESKVKLAVKDEIFEAKGKELVNEGWLYYYPYVRFEEEKIPILRIGDEVK 448
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ ++ TRPP +++ L+ M+K +GT +T + I+KL +R Y P
Sbjct: 449 VKKIEIERKETRPPARYTQSSLIREMEKLNLGTKSTRAEIIQKLFERGYV---RGNPIRP 505
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T +G+AL+ + ++ KP++ + +E DM E+ G+K+ V+ + +K
Sbjct: 506 TQLGKALIESLEGNNVDVIKPDMTARLEMDMDEIEKGSKAPEFVVKESREMLKKIL 561
>gi|448434802|ref|ZP_21586500.1| DNA topoisomerase I [Halorubrum tebenquichense DSM 14210]
gi|445684425|gb|ELZ36801.1| DNA topoisomerase I [Halorubrum tebenquichense DSM 14210]
Length = 879
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 201/719 (27%), Positives = 314/719 (43%), Gaps = 79/719 (10%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R+ +YE+ G+ C + GH++
Sbjct: 7 LIITEKDNAARRIADILS---GESATAERTNDVNVYEWG----GKRC----IGLAGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K +K I L AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKTPT--QKGIVAALRRLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ + E+ +A N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDAPVDRVRFSSITENEVQEAFANPDELDFELAAAGEARQTIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPESYWELTG 225
Query: 251 SHKSEEGT---ATFSWM------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
G A + ++ R ++D A + E ATV V ++ + P
Sbjct: 226 ELAKSGGDPFEARYFYLNDEGNERERVWDEGVAETLTEALDAADGATVDDVTRRTQTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + ++ +
Sbjct: 286 PTPFNTTAF-IRAAGSIGHSAQRAMSLAEDLYTAGYVTYPRTDNTVYPDDLEPEELIADL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A L+D P G + HPPIHPT S S D +++YEL+
Sbjct: 345 AESSTFGTDAASLIDD-DDREIEPTEGDEETTDHPPIHPTGELPSASDLSDDEWEVYELI 403
Query: 422 VRHFLACVSQPAV------------GAETIVE--------------------INIAGEVF 449
VR FLA + PA A I E + G
Sbjct: 404 VRRFLATCADPATWERLRVVALANGDATPIAERADGLAALRDPDDAATPADLVADGGLRL 463
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y +VY + S ++P G+ + + T+PP ++ L+
Sbjct: 464 KANGKRLLEAGYHEVYPYRSSDERIVPDVEVGETLSLSDRATEGKETQPPRRYGQSRLIE 523
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K +GT AT H I+KL DR Y D PT + EA+V ++ + +
Sbjct: 524 EMEKRQLGTKATRHRTIEKLYDRNYVESDPPR---PTRLAEAVVEAAEEFADRIVSEEMT 580
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM ++ G K DV A + + + F D + EA+G +D
Sbjct: 581 AQLERDMAAIAAGEKEYEDVTAASRELLSSVFDDLTESR----EAVGDHL------QDSL 630
Query: 630 AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
A + + C C S+++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 631 KADKTLGPCPECG-SDLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLILDETCED 687
>gi|355575535|ref|ZP_09045005.1| hypothetical protein HMPREF1008_00982 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817547|gb|EHF02052.1| hypothetical protein HMPREF1008_00982 [Olsenella sp. oral taxon 809
str. F0356]
Length = 845
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 206/751 (27%), Positives = 326/751 (43%), Gaps = 92/751 (12%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYE---FNYSIRGQPCHMLMTSVTGH 67
L V EK A+ +A +L G+ + +K+Y+ + +S G+ + + GH
Sbjct: 3 LVVTEKNDAAQQIARLLCTT-------GKPKADKVYDTPVYRFSHDGE--DWVTIGLRGH 53
Query: 68 LMELDF--DERYRK---W----------HSCDPADLYHAP---VRKHVPEDKKDIK---- 105
+M DF + RY K W + P L P VRK +D D+K
Sbjct: 54 IMRPDFPVELRYSKEDGWVGVTKEGEVLPASIPDGLARPPYEKVRKPFTKDGVDVKGWKV 113
Query: 106 ---------------------KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC 144
+ L+ A++ +V+ D DREGE I + + R V
Sbjct: 114 ASLPYLVWTPIQKEPAEKGIIRALKNLAKKADSIVIGTDFDREGELIGSDALRQMREVAP 173
Query: 145 HLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML-LKN 203
+ RAR+SA EI A QNLV+ +Q ADA ++RQ IDL GA TR+ TM
Sbjct: 174 DTPVSRARYSAFTKAEIDHAFQNLVELDQDLADAGESRQYIDLIWGAVLTRYLTMARFGG 233
Query: 204 FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC-----SHKSEEGT 258
F V S G Q PTL VVE+ E +A E++W I+ E+
Sbjct: 234 F---------GNVRSAGRVQTPTLALVVEKEREREAFVPEDYWVISGQLAPQGDVDEDAR 284
Query: 259 ATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYF 318
S D +A +E ATVTKV ++ PP P +T L+ A+
Sbjct: 285 FKVSHATARFKDEAAAKAAFERVRDAREATVTKVEKKSHTTRPPAPFNTTSLQAAAAAEG 344
Query: 319 RMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHA 378
+S TM++AE LY G ISYPR + + +L +V+ P + P RLL
Sbjct: 345 -ISPARTMRLAEGLYMDGLISYPRVDNTVYPKSLDLREVVEALSAVPQYRPTCSRLL--- 400
Query: 379 AGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAET 438
AG +P G + HPPI+PT ++ R ++LY L+ R FLA + PAV T
Sbjct: 401 AGGPLHPTRGKQETTDHPPIYPTA-AADPDRLEGPAWRLYNLIARRFLATLEDPAVSEST 459
Query: 439 IVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRP 498
+ ++AGE F SG VI+ + +Y F S +P G + L++ T P
Sbjct: 460 KLGFDVAGEPFQASGTVIVKPGFRAIYPFGSRKDEQLPALAEGDVCDVVGMGLEAKQTEP 519
Query: 499 PPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDD 558
P S+ L+ M+K G+GT +T I++L D Y D P+ +G A++
Sbjct: 520 PARYSQGRLIQEMEKRGLGTKSTRASIIQRLYDVKYLKNDP---VEPSQLGMAVIEALTQ 576
Query: 559 MGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK-KVKLLEAMGI 617
+ P++ + +E+DM +V+ G+ ++ V+ + + + A +DA ++ K L +A+
Sbjct: 577 YAPHVTSPDMTAELEADMTKVAEGSDTQEGVVTHS-RALLAGMIDALIEHKDDLGDAIA- 634
Query: 618 FFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVS 677
D A V C C ++ ++ +GC+ +P C +P +V
Sbjct: 635 ---------DAVTADAKVGTCPKCGRDLVMKSSAKTRGSFIGCMGWPDCDVTYPVPSNVK 685
Query: 678 EAAV--TTNTCNSCTPGPVYLIQFKFRQHEI 706
A + C C + F+ + +E+
Sbjct: 686 VAPIEGEAGVCPKCGAPRIRCTPFRSKPYEV 716
>gi|254168173|ref|ZP_04875020.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
gi|197622939|gb|EDY35507.1| DNA topoisomerase I [Aciduliprofundum boonei T469]
Length = 747
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 170/596 (28%), Positives = 283/596 (47%), Gaps = 37/596 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+N+L +AEK + A+ +A ILS + I++GR+ Y YS + + GH
Sbjct: 1 MNILVIAEKRNAAQRIAKILSGGRYETIKKGRNAY-------YSFTKGKDRYFVVPLRGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
++ +D+ + +++W D L K + E K I L A+ L++ D DRE
Sbjct: 54 ILHMDYPDEFKRWSLGDLQRLVDEEPIKIIKE--KGIANILRTLAKDADMLIIATDYDRE 111
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I E + + N ++RA+FSAL +REI A NLVD N A A + RQ+IDL
Sbjct: 112 GELIGVESLSI---TNFKGPVKRAKFSALTEREIENAFSNLVDVNYNLASAAETRQKIDL 168
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
GAS TRF ++ D LS G Q PTL +V+R EI+ +W
Sbjct: 169 AWGASLTRFISLASSRRGKD--------YLSVGRVQSPTLALIVKREKEIENFVPTPYWN 220
Query: 248 INCSHKSEEGTATFSWMR--GHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
I FS M + A+ +YE +A V Q+++ PP P
Sbjct: 221 IKGLFFKRR---NFSGMHISNPFWKEEEAMEVYEKVKDTKSAKVLDFIQEDRKIRPPIPF 277
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T E A++ S+ M++AE+LY G+ISYPRT+ + +++ I++
Sbjct: 278 NTTEFLSEATK-LGFSAARAMRLAEELYMGGYISYPRTDNTVYPKTLSINSILKSL---- 332
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+ + + L R P G + HPPI PT+ ++ E D K+YELVVR F
Sbjct: 333 EKSKFKEEALKLQKERRRYPTRGKKESTDHPPIVPTRGANLEG----DKGKIYELVVRRF 388
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
+A ++ E+ V++ + E+F G+ ++ + +L Y + + IP G +
Sbjct: 389 MATLAPDLEYRESKVKLAVKDEIFEAKGKELVNEGWLYYYPYARFEEEKIPILRIGDEVK 448
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ ++ TRPP +++ L+ M+K +GT +T + I+KL +R Y P
Sbjct: 449 VKKIEIERKETRPPARYTQSSLIREMEKLNLGTKSTRAEIIQKLFERGYV---RGNPIRP 505
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T +G+AL+ + ++ KP++ + +E DM E+ G+K+ V+ + +K
Sbjct: 506 TQLGKALIESLEGNNVDVIKPDMTARLEMDMDEIEKGSKAPEFVVKESREMLKKIL 561
>gi|194389382|dbj|BAG61652.1| unnamed protein product [Homo sapiens]
Length = 531
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 190/317 (59%), Gaps = 13/317 (4%)
Query: 455 VILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+ILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP LL+EADL++ M+K
Sbjct: 1 MILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKH 60
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
GIGTDAT +HI+ + R Y + RF P ++G LV GYD MGYE+ KP+LR+ +E+
Sbjct: 61 GIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEA 120
Query: 575 DMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ----A 630
D+K + G K K VL +Q+ K F++A K KL EA+ +F + Q+ A
Sbjct: 121 DLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFGNGTELAQQEDIYPA 180
Query: 631 AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCT 690
E +R+C C + +MVLK ++G + C+ FP+CR+AVWLP SV EA+ ++ C C
Sbjct: 181 MPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVLEASRDSSVCPVCQ 239
Query: 691 PGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTA--- 747
P PVY ++ KF++ +PP + + CIGGCD+TLR+++++ +G P R P+
Sbjct: 240 PHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGG--PPRASQPSGRLQ 297
Query: 748 ---SSNNGQQSNHRQRA 761
S N S H Q A
Sbjct: 298 ANQSLNRMDNSQHPQPA 314
>gi|288931982|ref|YP_003436042.1| DNA topoisomerase I [Ferroglobus placidus DSM 10642]
gi|288894230|gb|ADC65767.1| DNA topoisomerase I [Ferroglobus placidus DSM 10642]
Length = 653
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 194/681 (28%), Positives = 310/681 (45%), Gaps = 65/681 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L V EK AK +A IL G + K Y NY + G C + + GH++E
Sbjct: 3 LIVTEKNQTAKRIAQILF---------GSFQTKKKYGVNYYLNGDAC---VVGLKGHVVE 50
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF Y W + L +A + + V E K I + LEE A++ + + D DREGE
Sbjct: 51 YDFPPEYNDWKRVELKSLLNARIVRVVKE--KSIVRLLEELAKKADRVTIATDYDREGEL 108
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E +++ + VN + + R +FSA+ EI +A + N A A + RQ IDL G
Sbjct: 109 IGLEAVQIIKRVNPDVRIDRVKFSAITPEEIRKAFSSPGKINVNLAKAAETRQIIDLLWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A TR ++ D LS G Q PTL +V+R EI+ + E +W I
Sbjct: 169 AVLTRLISLSSGRLGRD--------FLSAGRVQSPTLRIIVDREKEIREFKPEPYWEITA 220
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
K E G + + D A +YE V + E+++ P P +T E
Sbjct: 221 --KFERGVE--AKIPRRFKDKEEAKRVYEKIGD---GVVKSFEEVERVEKKPIPFNTTEF 273
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
K AS++ M + M +AE+LY G+ISYPRT+ + NL +V+ +G ++
Sbjct: 274 LKEASKF--MPPDKAMAIAENLYINGYISYPRTDNTVYPQSLNLKKLVKMFLGS-EFDKE 330
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
A+ L+ P G + K HPPIHPT + S+D + +YEL+VR FLA ++
Sbjct: 331 ARIALEDM-----KPSRGKKETKDHPPIHPTALAE-RKELSKDEWIIYELIVRRFLATLA 384
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
AV EI GE SG+ ++ + +Y + + +P G++ +
Sbjct: 385 PDAVWMVRKAEIISGGEKLVASGKELIKSGWRAIYIYSKAEDVFLPKLRVGERLKLLSKK 444
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA----IKDANTRFAPT 546
L T+PP S + L+ M+K +GT +T H+ I+KL R Y +K T F+
Sbjct: 445 LHEKKTKPPSRYSTSSLIKLMEKLNLGTKSTRHEIIRKLYSRGYVRGNPVKPTETAFS-- 502
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+ EAL Y+ + P++ + +E DM ++ G V+ ++ ++ A
Sbjct: 503 -VVEALKKLYEPITL----PDMTAKLEEDMNKIEEGKVDPKLVVKESVEFLRRVLESADK 557
Query: 607 KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
+++ + + GI ++ G +CG N+V+KK++ V C +P C
Sbjct: 558 EELSKILSEGINKDKIVGS---------CPECG----GNLVVKKAK--GRFVACSNYPDC 602
Query: 667 RNAVWLPGSVSEAAVTTNTCN 687
+ ++ LP S VT TC
Sbjct: 603 KFSLPLPQKGS-LYVTAKTCK 622
>gi|435850997|ref|YP_007312583.1| DNA topoisomerase I, archaeal [Methanomethylovorans hollandica DSM
15978]
gi|433661627|gb|AGB49053.1| DNA topoisomerase I, archaeal [Methanomethylovorans hollandica DSM
15978]
Length = 753
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 181/676 (26%), Positives = 307/676 (45%), Gaps = 39/676 (5%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK AK +A ILS + ++R N + Y + + ++GH+++
Sbjct: 3 LIVAEKHIAAKRIANILSAGKLSQVR-----VNGVD--TYQFEAEDGKKVFIGLSGHIVK 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF Y W + +L A V E + I L++ + + + D DREGE
Sbjct: 56 LDFPRSYNNWQKVEAKELVDADVITVSTEAR--IVAALKKLGKEATRVTIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E +++ R +N ++ R +SA+ +EI A +N+ + + ADA +RQ +DL G
Sbjct: 114 IGVEALQIIREINPNVQFDRVHYSAITPKEIIDAFENVSNIDFNLADAGHSRQVLDLVWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TRF ++ L LS G Q PTL +V++ E +A E + +W +
Sbjct: 174 ASLTRFISLAAGRLG--------KLFLSVGRVQSPTLALIVDKEKEREAFEIKPYWEL-Y 224
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+H + F+ + + + + A + +V K PP P +T E
Sbjct: 225 AHLKDRKDIEFTVQHVNRRFWEKHEVDKLVSNLGKNAIIKEVVTSTKKDKPPIPFNTTEF 284
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
AS + M++AE LY GFISYPRT+ + + +L ++ E + Y
Sbjct: 285 ITAASS-LGFTPASAMRIAEALYIQGFISYPRTDNTVYPATLDLREMI-EIFAKGTFKEY 342
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
A++LL A P G + HPPI+P + +S ++ +K+YE+VVR F A +
Sbjct: 343 AEKLL---AKETLEPTRGKKETTDHPPIYPASLAK-KSELNEQEWKIYEMVVRRFFATFA 398
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
+PA+ + +++ E FS +G ++ + Y + + ++P G + +
Sbjct: 399 EPAIWETIKAKFDVSSEEFSATGARLVEAGWRWYYPYNAPEDRLLPAMKEGDELTVREIE 458
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
+ T+PP + L+ M++ G+GT AT H+ I KL R Y PT
Sbjct: 459 VQDKETQPPGRYGQGRLIRTMEELGLGTKATRHEIISKLYSRAYV---HGNPLQPTKTAY 515
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK 610
A+V + + KP + S +E+DM ++ G + DVL + + + F D K
Sbjct: 516 AVVEALEKYAPTISKPEMTSRLEADMDRIAEGQIPEEDVLQESREMLNSVFNDLEKNKDN 575
Query: 611 LLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAV 670
+ E++ R ED+ V+ C C MV+ +S+ G+ +GC +P+C ++
Sbjct: 576 ITESL-----RAGLREDK-----VIGTCSKCGSVLMVM-RSKKGSRFIGCKGYPECSFSL 624
Query: 671 WLPGSVSEAAVTTNTC 686
LP S VT C
Sbjct: 625 PLPRS-GHVVVTDKLC 639
>gi|147919524|ref|YP_686736.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
gi|110622132|emb|CAJ37410.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
Length = 767
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 192/664 (28%), Positives = 294/664 (44%), Gaps = 43/664 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK A +A IL K++ G Y R + L+ + GH++E
Sbjct: 3 LIITEKHDAASKIAAILFKDRTPERINGVPAY----------RSKAADALVIGLAGHILE 52
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF E Y+KW + P +L A V + KKD+ L A + + + D DREGE
Sbjct: 53 LDFPEAYQKWSAFPPRELIRAQVVTY--PSKKDLVGALATLATKVTRVTIATDYDREGEM 110
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + + ++ R R+S+ EI +A + + A A + RQEIDL G
Sbjct: 111 IGVEAYNIIKKISSP-TFDRVRYSSFTKEEITKAFASPTAVDFDLAAAGECRQEIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ F D LS G Q P L +V+R EIQA S+ +W I
Sbjct: 170 AALTRFVSIAGNKFGKD--------FLSVGRVQTPLLALIVDREKEIQAFTSKPYWEIVA 221
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+ E+ + T S RG A I++ + TA V V+ K + PP P +T E
Sbjct: 222 TLLKEDRSFTASHKRGRFDKKEEAAAIHKKLGK--TAVVKDVKADRKKEQPPIPFNTTEF 279
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
K AS ++ M++AE LY G+ISYPRT+ + NL ++ PD+
Sbjct: 280 VKAAS-ALGFTAASAMQIAEALYINGWISYPRTDNTVYPDTLNLKDLLGIFKTSPDFAKS 338
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
A LL + P G + K HPPI+P + + +KLYELVVR + A +S
Sbjct: 339 ALELLAMPS---ITPTRGKVETKDHPPIYPVACAMRKD-LDDRQWKLYELVVRRYFATLS 394
Query: 431 QPAVGAETI-VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
PA ETI EI+I+GE F+ +G+ + + Y + ++P G +
Sbjct: 395 -PACEWETIKAEIDISGEPFAANGKQLAVPGWRKHYPYGLQKDELLPPLKAGDPLLVRKA 453
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
L T PP + L+ M+ G+GT AT H+ + KL R + + PT G
Sbjct: 454 DLLEKKTEPPKRYGQGKLVQMMEDLGLGTKATRHEALAKLYQRGFIEGNPPQ---PTATG 510
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
+L+ + + S +E DM ++ KA V + + F +L+K
Sbjct: 511 ISLIDALKAYASAITSNAMTSKLERDMDAIAASQLKKAAVAKESREMLDKVF--DQLEKN 568
Query: 610 KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
+ LE I ++ D + C +C + +V ++ D N + C FP CRN
Sbjct: 569 R-LEIGRILRSGFAADSD-------IGPCPLCGSALVVRERKSDKNKFIACSGFPNCRNT 620
Query: 670 VWLP 673
+P
Sbjct: 621 YNVP 624
>gi|336476645|ref|YP_004615786.1| DNA topoisomerase I [Methanosalsum zhilinae DSM 4017]
gi|335930026|gb|AEH60567.1| DNA topoisomerase I [Methanosalsum zhilinae DSM 4017]
Length = 762
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 181/678 (26%), Positives = 318/678 (46%), Gaps = 40/678 (5%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK AK +A IL+ + +SR N + + + + + ++ ++GH++
Sbjct: 3 LIIAEKNIAAKRIASILAPK-----KPKQSRVNGVDTYQFKNKEE---TVVIGLSGHIVT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF +Y+ W + +L A + K I L++ A++ + + D DREGE
Sbjct: 55 VDFPPQYKNWQKVESRELIDAEIVTVATHSK--IVSVLKKMAKKATNVTIATDYDREGEL 112
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + + + N L R R+SA+ +EI+ A N V + A A +RQ IDL G
Sbjct: 113 IGVEALNILKKANPDLKFDRVRYSAITPKEINDAFSNPVSIDFNLAAAGHSRQVIDLVWG 172
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TR+ +++ N+ LS G Q PTL +V+R E + +W I+
Sbjct: 173 ASLTRYLSLVSGRLG--------NMFLSVGRVQSPTLAIIVDREKERDEFVPKPYWEIDA 224
Query: 251 SHKSEEGTATF-SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+ + S +G +D A + E + A V+++R+ K PP P +T E
Sbjct: 225 LLEDKNKNEVLASHSKGRFWDKDEADTVMEKVNKARKAVVSQIRKSSKTDKPPTPFNTTE 284
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
L AS ++ + M++AE LY G+ISYPRT+ + + +L + E +
Sbjct: 285 LISAASS-IGFTASNAMRIAESLYTNGYISYPRTDNTVYPASLDLRAQI-EIFSSGIFKE 342
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
YA LL + P G + HPPI+P ++ +S ++ +KLYELVVR F A
Sbjct: 343 YANELLKKKELI---PTRGKKESTDHPPIYPASYAK-KSELNEQEWKLYELVVRRFFATF 398
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
++PA ++ I E F +SG ++ + Y + + ++P +
Sbjct: 399 AEPARWETMRIKFEINEEEFKSSGARLVNAGWRWYYPYNAPEDRLLPQMEEKDILSVEKI 458
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ T+PP + L+ M++ G+GT AT H+ I KL R Y + PT
Sbjct: 459 DMVDKETKPPGRYGQGRLIRLMEELGLGTKATRHETISKLYSRTYV---HGSPLIPTKTA 515
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
A++ + + KP++ S +E DM +++ G ++ DV+ + +++ F + +
Sbjct: 516 YAVIETLEKYAPTITKPDMTSKLEQDMDKIAEGEITENDVIDESREMLQSIFSEFEKCQD 575
Query: 610 KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
K+ E++ R ED+ +V C C S + +++SR G+ +GC +P C +
Sbjct: 576 KIAESL-----RAGLREDK-----IVGSCPECN-SKLSIRRSRRGSRFIGCSNYPDCTFS 624
Query: 670 VWLPGSVSEAAVTTNTCN 687
+ LP S + VT +C+
Sbjct: 625 LPLPKS-GQIIVTDKSCD 641
>gi|448498502|ref|ZP_21610852.1| DNA topoisomerase I [Halorubrum coriense DSM 10284]
gi|445698611|gb|ELZ50652.1| DNA topoisomerase I [Halorubrum coriense DSM 10284]
Length = 865
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 196/721 (27%), Positives = 315/721 (43%), Gaps = 84/721 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATA-----ERMNDVNVYEWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ + E+ +A N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVPVDRVRFSSITENEVREAFANPDDLDFELAAAGEARQTIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EI+A + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIEAFDPESYWELTG 225
Query: 251 SHKSEEGT---ATFSWM------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
G A + ++ R ++D A + E ATV V ++ + P
Sbjct: 226 ELAKSSGDPFEARYFYLNDEGNERERVWDEAVADALTEALDAADGATVDDVTRRTQTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGHSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLEPEELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A LLD + P G + HPPIHPT + S D +++YEL+
Sbjct: 345 SAASTFGKDAASLLDDDREI--EPTEGDEETTDHPPIHPTGELPAAADLSDDEWEVYELI 402
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEV--------------------------------F 449
VR FLA + PA V GE
Sbjct: 403 VRRFLATCADPATWERLRVVALANGEATPIAERADGLAALRDSEDAAKPADLAADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y +VY + S ++P G+ + T ++ T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHEVYPYRSSDERIVPDVEVGETLALSGRTTEAKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K +GT AT H I+KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRQLGTKATRHRTIEKLYDRNYVESDPPR---PTRLAEAVVEAAEEFADRIVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM ++ G K+ +V + + F D + R + G+ Q
Sbjct: 580 AQLEQDMAAIAAGEKAYDEVTEASRELLSRVFDD-------------LTDSREAVGDHLQ 626
Query: 630 AAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+ + + G C E S+++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 627 TSLKADKTLGPCPECGSDLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLLLDETCE 685
Query: 688 S 688
Sbjct: 686 D 686
>gi|448531338|ref|ZP_21621025.1| DNA topoisomerase I [Halorubrum hochstenium ATCC 700873]
gi|445707295|gb|ELZ59153.1| DNA topoisomerase I [Halorubrum hochstenium ATCC 700873]
Length = 865
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 198/721 (27%), Positives = 316/721 (43%), Gaps = 84/721 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R+ +YE+ G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILS---GESATAERTNDVNVYEWG----GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + R RFS++ + E+ +A N + + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDAPVDRVRFSSITENEVQEAFANPDELDFELAAAGEARQTIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPEPYWELTG 225
Query: 251 SHKSEEGT---ATFSWM------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
G A + ++ R ++D A + E A V V ++ + P
Sbjct: 226 ELAKSGGDPFEARYFYLNDEGNERERVWDEGVAETLTEALDAADGANVDDVTRRTQTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + ++ +
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPDDLEPEELIADL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A L+D + P G + HPPIHPT S S D +++YEL+
Sbjct: 345 AESSTFGTDATSLIDDDREI--EPTEGDEETTDHPPIHPTGELPSASDLSDDEWEVYELI 402
Query: 422 VRHFLACVSQPAV------------GAETIVE--------------------INIAGEVF 449
VR FLA + PA A I E + G
Sbjct: 403 VRRFLATCADPATWERLRVVALANGEATPIAERADGLAALRNPDDAAKPADLVADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y +VY + S ++P G+ + + T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHEVYPYRSSDERIVPDVEVGETLSLSDRATEGKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K +GT AT H I+KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRQLGTKATRHRTIEKLYDRNYVESDPPR---PTRLAEAVVEAAEEFADRIVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM ++ G + DV + + + F D L E+ R + G+ Q
Sbjct: 580 AQLERDMAAIAAGEREYEDVTEASRELLSSVFDD-------LTES------RETVGDHLQ 626
Query: 630 AAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+ + + G C E S+++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 627 NSLKADKTLGPCPECGSDLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLILDETCE 685
Query: 688 S 688
Sbjct: 686 D 686
>gi|257784895|ref|YP_003180112.1| DNA topoisomerase type IA central domain-containing protein
[Atopobium parvulum DSM 20469]
gi|257473402|gb|ACV51521.1| DNA topoisomerase type IA central domain protein [Atopobium
parvulum DSM 20469]
Length = 837
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 181/623 (29%), Positives = 288/623 (46%), Gaps = 34/623 (5%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L APV K E K+I + L+ A++ + +++ D DREGE I + + +VN +L
Sbjct: 119 LIWAPVDKQPAE--KEIIRALKNLAKKAESVIIGTDFDREGELIGSDALAQVLSVNPNLA 176
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHID 207
+ RAR+SA EI A NLVD + A A ++RQ IDL GA TR+ L
Sbjct: 177 VFRARYSAFTKTEIETAFNNLVDLDYNLAAAGESRQYIDLIWGAVLTRY----LTTARFG 232
Query: 208 SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN-CSHKSEEGTATFSWMR- 265
+ + R S G Q PTL VVER E A + E++W I+ + ++ ATF +
Sbjct: 233 GLGNTR----SAGRVQTPTLALVVERERERLAFKPEDYWVISGVASPEDDDEATFKMVHQ 288
Query: 266 -GHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEH 324
+D A +Y++ + ATV ++ + + + PP P +T L+ A+ +S
Sbjct: 289 TARFWDQAEADTVYDVVKDQTQATVVEIESRSRKQQPPAPFNTTSLQAAAAAEG-ISPAR 347
Query: 325 TMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
TM++AE LY G ISYPR + + S +L V+ P + P ++LL +
Sbjct: 348 TMRLAESLYMDGLISYPRVDNTVYPSSLDLKDCVRTLSAVPQYAPTCKKLLGQPK---LH 404
Query: 385 PGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINI 444
G + HPPI+PT ++ +S +KLY L+ R FLA + PA + T + +++
Sbjct: 405 ATRGKQESTDHPPIYPTAAANPDS-LQPAAWKLYNLIARRFLATLMGPATMSGTKITLDV 463
Query: 445 AGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSE 504
AG+ F +G V+ + ++Y F IP G+ +L+LD+ T PP S+
Sbjct: 464 AGQPFVANGTVLAEPGFREIYPFGLKKDDQIPDVGEGEIVSIKSLSLDAKQTEPPARYSQ 523
Query: 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELW 564
L+ M+K G+GT +T I L R Y D P+ +G A+V +
Sbjct: 524 GKLIQEMEKRGLGTKSTRASIIDTLYQRKYLKNDP---VEPSQLGMAIVDALSQFAPHIT 580
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK-KVKLLEAMGIFFERWS 623
P++ + +ESDM V+ G ++ V+ + + + A +D + K L EA+
Sbjct: 581 SPDMTAELESDMTSVAEGKDTRDGVVTHS-RSLLAGMIDVLIDHKEDLSEAIA------- 632
Query: 624 GGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP-GSVSEAAVT 682
D A V C C + + + VGC+ +P C LP G V
Sbjct: 633 ---DAVTADAKVGTCPKCGKDLVAKSSLKTRGSFVGCMGWPDCDVTYPLPQGRVEPLEGE 689
Query: 683 TNTCNSCTPGPVYLIQFKFRQHE 705
C C V + F+ R +E
Sbjct: 690 AGVCPECGAPRVKVQPFRQRAYE 712
>gi|269986154|gb|EEZ92467.1| DNA topoisomerase type IA central domain protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 703
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 174/682 (25%), Positives = 330/682 (48%), Gaps = 45/682 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK + A+++A L++ + +RI++ + + + I G+ ++ + GH+
Sbjct: 24 LIIAEKSTAAETIAKNLAETK-IRIQD----FGPVKVWYTQINGE--ETVVMPLKGHIKN 76
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+ + E +RKW+ + A + + P + +I +++ A++ +++ D D EGE+
Sbjct: 77 VRYPETFRKWNEETLMKMIDAKLV-YYPTAEDNIA-VIKKFAKKADKVIIATDYDTEGES 134
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I FE I+V R N + R+ FS+L +E+ +A +NL PN+ +D+ DAR+EIDL +G
Sbjct: 135 IGFEAIDVVREENTKSKVYRSVFSSLTTKELSEAFKNLQKPNKDLSDSADARREIDLILG 194
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A TRF ++ + N LS G Q PTL +V R E +A + E++W
Sbjct: 195 AVLTRFISLAAERLG--------NSFLSIGRVQTPTLAIIVARDSERRAFKPEKYWRFTA 246
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+ ++++ + G +FD +A + + E A + KV +++ PP P +T
Sbjct: 247 TIQTKDAEFLAEYKDGKVFDEKTAEKLRK-TKNEKKAVIDKVDMKKRRMPPPKPFNTTAF 305
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
R++ S + M++ + LY G++SYPRT+++++ +L I+ E +
Sbjct: 306 -LRSAAAIGFSVPNAMRIVQGLYMKGYVSYPRTDSEAYPPTLDLKEILNELRNSSSYSKA 364
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
+L NP + G + K HPPIHP K + + + ++++L+ R FLA +S
Sbjct: 365 VSEILKKPL----NP-TKGKEAKDHPPIHPVKLPN--EKLNPQEARIFDLISRRFLATLS 417
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
+ ++++I G F+ G IL + VY F + ++P G+ I L
Sbjct: 418 DESEEEIISIKLDIKGNEFTAKGSRILVPGWRSVYIFSKYEENILPEIKEGE--ILKVLK 475
Query: 491 LD--SGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+D T PP S+ +L M+ +GT AT + +KKL++R Y A+ P+ +
Sbjct: 476 IDEIEDFTTPPGNYSQGAILKIMEDLNLGTKATRPEILKKLMERRYI--SASRTLIPSEV 533
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
A++ + E+ L + +E +MK V G K KA+V+ ++ + + K+
Sbjct: 534 AFAVIENMQKVSNEITGAELTATLEKEMKLVEEGQKKKAEVVNESRDMLRKVLKNLQSKR 593
Query: 609 VKLLEAM-GIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
++ E M +++ G ++ G++ +V+ K + VGC +P+C
Sbjct: 594 KEIKELMHKALLQQYIFGTCPKSGGKL----------KLVVSK-KSHKRFVGCSDYPKCH 642
Query: 668 NAVWLPGSVSEAAVTTNTCNSC 689
+ LP S ++ +C C
Sbjct: 643 FGMPLPQS-GYFFISPQSCPKC 663
>gi|448510389|ref|ZP_21615890.1| DNA topoisomerase I [Halorubrum distributum JCM 9100]
gi|448522099|ref|ZP_21618364.1| DNA topoisomerase I [Halorubrum distributum JCM 10118]
gi|445695956|gb|ELZ48052.1| DNA topoisomerase I [Halorubrum distributum JCM 9100]
gi|445702373|gb|ELZ54327.1| DNA topoisomerase I [Halorubrum distributum JCM 10118]
Length = 865
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 201/721 (27%), Positives = 318/721 (44%), Gaps = 84/721 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATA-----ERMNDVNVYEWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K K+ I L AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKTPT--KEGIVAALRRLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ + E+ +A N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPESYWELTG 225
Query: 251 SHKSEEGT---ATFSWM------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
G A + ++ R ++D A ++ E ATV V ++ + P
Sbjct: 226 ELAKSGGDPFEARYFYLNDEGNERERVWDGDVAEVLTEALAAADAATVDDVDRRTQTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLEPAELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A LLD + P G + HPPIHPT S S D +++YEL+
Sbjct: 345 SAASTFGTDAASLLDGDDEI--EPTEGDEETTDHPPIHPTGELPSASDLSDDEWEVYELI 402
Query: 422 VRHFLACVSQPAV------------GAETIVE--------------------INIAGEVF 449
VR FLA + PA A I E + G
Sbjct: 403 VRRFLATCADPATWERLRVVALANGEATPIAETADGLAALRNPDDAAKPADLVADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ + + T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLSLSDRATEGKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K +GT AT H I+KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRQLGTKATRHRTIEKLYDRNYVESDPPR---PTRLAEAVVEAAEEFADRIVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM ++ G K+ +V + + F D L E+ R + G+ Q
Sbjct: 580 AQLEQDMAAIAAGEKAYDEVTEASRELLSRVFDD-------LTES------REAVGDHLQ 626
Query: 630 AAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+ + + G C E ++++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 627 NSLKADKTLGPCPECGADLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLILDETCE 685
Query: 688 S 688
Sbjct: 686 D 686
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 603 DARLKKVKLLEAMGIFFE---RWSGGEDQQAAGEVVRQCGICQES---NMVLKKSRDGNL 656
D L+ VK+L F + E + EV+ C C E ++ +K+ R G+
Sbjct: 686 DHELRHVKMLAGRKTFVHGCPQCKADEADEQEDEVIGTCPDCGEEHGGDLAIKRLRSGSR 745
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+VGC +P C ++ LP E VT TC
Sbjct: 746 LVGCTRYPDCDYSLPLP-RRGEIEVTDETCE 775
>gi|448450586|ref|ZP_21592405.1| DNA topoisomerase I [Halorubrum litoreum JCM 13561]
gi|445811700|gb|EMA61703.1| DNA topoisomerase I [Halorubrum litoreum JCM 13561]
Length = 865
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 200/721 (27%), Positives = 318/721 (44%), Gaps = 84/721 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATA-----ERMNDVNVYEWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ + E+ +A N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPESYWELTG 225
Query: 251 SHKSEEGT---ATFSWM------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
G A + ++ R ++D A ++ E ATV V ++ + P
Sbjct: 226 ELAKSGGDPFEARYFYLNDEGNERERVWDGDVAAVLTEALAAADAATVDDVDRRTQTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLEPAELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A LLD + P G + HPPIHPT S S D +++YEL+
Sbjct: 345 SAASTFGTDAASLLDGDDEI--EPTEGDEETTDHPPIHPTGELPSASDLSDDEWEVYELI 402
Query: 422 VRHFLACVSQPAV------------GAETIVE--------------------INIAGEVF 449
VR FLA + PA A I E + G
Sbjct: 403 VRRFLATCADPATWERLRVVALANGEATPIAETADGLAALRNPDDAAKPADLVADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ + + T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLSLSDRATEGKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K +GT AT H I+KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRQLGTKATRHRTIEKLYDRNYVESDPPR---PTRLAEAVVEAAEEFADRIVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM ++ G K+ +V + + F D L E+ R + G+ Q
Sbjct: 580 AQLEQDMAAIAAGEKAYDEVTEASRELLSRVFDD-------LTES------REAVGDHLQ 626
Query: 630 AAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+ + + G C E ++++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 627 NSLKADKTLGPCPECGADLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLILDETCE 685
Query: 688 S 688
Sbjct: 686 D 686
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 603 DARLKKVKLLEAMGIFFE---RWSGGEDQQAAGEVVRQCGICQES---NMVLKKSRDGNL 656
D L+ VK+L F + E + EV+ C C E ++ +K+ R G+
Sbjct: 686 DHELRHVKMLAGRKTFVHGCPQCKADEADEQEDEVIGTCPDCGEEHGGDLAIKRLRSGSR 745
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+VGC +P C ++ LP E VT TC
Sbjct: 746 LVGCTRYPDCDYSLPLP-RRGEIEVTDETCE 775
>gi|257065031|ref|YP_003144703.1| topoisomerase IA [Slackia heliotrinireducens DSM 20476]
gi|256792684|gb|ACV23354.1| topoisomerase IA [Slackia heliotrinireducens DSM 20476]
Length = 837
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 196/684 (28%), Positives = 310/684 (45%), Gaps = 62/684 (9%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L +AP++K+ E KDI ++L+ A++ +++ D DREGE I + + R VN
Sbjct: 119 LVYAPIQKNPKE--KDIIRSLKNLAKKADDIIIATDFDREGELIGSDALSCIREVNTTAP 176
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHID 207
+ RAR+SALI EI A +NLV+ + A A ++RQEIDL GA TR+ T++ + +
Sbjct: 177 VSRARYSALIKPEITHAFENLVELDMNLAHAGESRQEIDLIWGAVLTRYLTIVKFAGYGN 236
Query: 208 SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATF--SWMR 265
V S G Q PTL +VER E A E++W I K +G F +
Sbjct: 237 --------VRSSGRVQTPTLALIVERERERMAFVPEDYWVIKA--KFSDGIEPFEATHKE 286
Query: 266 GHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHT 325
G +A + TV+ + ++++ P P +T L A+ +S T
Sbjct: 287 GRFKTQEAADAVMNAVNGAQFGTVSGIEKRKRTVSAPTPFNTTGLMAAAAAE-GLSPART 345
Query: 326 MKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP 385
M++AE LY AG+ SYPR + + S +L +V+ P + PY ++LL A G P
Sbjct: 346 MRLAESLYMAGYTSYPRVDNTVYPSSFDLPAMVKTLSEVPAYEPYCRQLL--AKGTL-TP 402
Query: 386 GSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
G + HPPI P + +S + + +KLY L+ R FLA +S AV T V +++
Sbjct: 403 TRGKQESTDHPPIVPMQAASPD-KLQPAEWKLYNLIARRFLATLSDAAVIEGTKVSVDVN 461
Query: 446 GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEA 505
E F T G V++ + +Y + + ++P GQQ T + T PP S+
Sbjct: 462 DETFITRGDVVVKPGFRAIYPYGAKKDTILPQLNEGQQVDFLGATCEQKQTEPPARYSQG 521
Query: 506 DLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANTRFAPTNIGEALVMGYDDMGYELW 564
L+ M+K G+GT AT H ++DR Y +K N P+ +G A+ ++
Sbjct: 522 KLIQEMEKLGLGTKATRHS----IIDRLYNVKYIQNDPIEPSQLGIAVCDALGRFAPQIT 577
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSG 624
P + + +E DM +++ G+K++ +V+ + L+ LK E M E S
Sbjct: 578 SPGMTAELEKDMNQIADGDKTQKEVV-----DLSRDILNDVLK-----ELMPHSEEVASA 627
Query: 625 GEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTN 684
D AA V C C + + ++ ++ +GC +P+C LP E V
Sbjct: 628 LGDAVAADAYVGTCPKCGKDLQMRASNKTKSMFIGCSGWPECDVTYPLPKGKVE--VVEE 685
Query: 685 TCNSCTPGPVYLIQF--KFRQHEIPPGFNVNH-----LGCIGGCDE-------------- 723
C C + + F K R I P + N +G C E
Sbjct: 686 KCPVCGMPQIKVTAFRSKPRVQCIDPNCDSNQEPDVIVGACKACAEKGLDKKLIAQRNPR 745
Query: 724 TLRQLI-----EICGTGSRIPARG 742
TL++ I E CG +P G
Sbjct: 746 TLKRFIRCENYEECGVSYPLPQHG 769
>gi|448492196|ref|ZP_21608790.1| DNA topoisomerase I [Halorubrum californiensis DSM 19288]
gi|445691655|gb|ELZ43839.1| DNA topoisomerase I [Halorubrum californiensis DSM 19288]
Length = 865
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 199/719 (27%), Positives = 320/719 (44%), Gaps = 84/719 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATA-----ERMNDVNVYEWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ + E+ +A N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQIIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E FW +
Sbjct: 174 AALTRFLSLSARQRGDD--------FISVGRVQGPTLKLIVDREREIQAFDPESFWELTG 225
Query: 251 SHKSEEGT---ATFSWM------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
G A + ++ R ++D A + + ATV V ++ + P
Sbjct: 226 ELAKSGGDPFEARYFYLNDEGNERERVWDEAVAETLADALDAADGATVDDVTRRTQTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLEPEELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A LLD + P G + HPP+HPT + S D +++YEL+
Sbjct: 345 SAASTFGKDAASLLDGDRDI--EPTEGDEETTDHPPVHPTGELPSAADLSDDEWEVYELI 402
Query: 422 VRHFLACVSQPAV-------------------GAETIVEI----NIAGEV---------F 449
VR FLA + PA GA+ + + + AG
Sbjct: 403 VRRFLATCADPATWERLRVVALANGEATPIAEGADGLAALRNPDDAAGAADLVADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ + T + T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLSLSDRTTEGKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K +GT AT H I+KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRQLGTKATRHRTIEKLYDRNYVESDPPR---PTRLAEAVVEAAEEFADRIVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM ++ G K +V + F D L E+ R + G+ Q
Sbjct: 580 AQLERDMAAIAAGEKEYDEVTEASRDLLSRVFDD-------LTES------REAVGDHLQ 626
Query: 630 AAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
++ + + G C E ++++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 627 SSLKADKTLGPCPECGADLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLLLDETC 684
>gi|448424865|ref|ZP_21582643.1| DNA topoisomerase I [Halorubrum terrestre JCM 10247]
gi|445681711|gb|ELZ34140.1| DNA topoisomerase I [Halorubrum terrestre JCM 10247]
Length = 865
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 200/721 (27%), Positives = 318/721 (44%), Gaps = 84/721 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS R N + + + G+ C ++GH++
Sbjct: 7 LIITEKDNAARRIADILSGESATA-----ERMNDVNVYEWG--GKRC----IGLSGHVVG 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L APV K ++ I L AR +V+ D DREGE
Sbjct: 56 VDFPAEYNDWRDVEPVELIDAPVTKTPTQEG--IVAALRRLARNASRVVIATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R VN + + R RFS++ + E+ +A N D + A A +ARQ IDL G
Sbjct: 114 IGKEAYELVREVNEDVPVDRVRFSSITENEVQEAFANPDDLDFELAAAGEARQTIDLTWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E +W +
Sbjct: 174 AALTRFLSLSARQLGDD--------FISVGRVQGPTLKLIVDREREIQAFDPESYWELTG 225
Query: 251 SHKSEEGT---ATFSWM------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
G A + ++ R ++D A ++ E ATV V ++ + P
Sbjct: 226 ELAKSGGDPFEARYFYLNDEGNERERVWDGDVAEVLTEALAAADAATVDDVDRRTQTDDP 285
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T RA+ S++ M +AEDLY AG+++YPRT+ + +++E
Sbjct: 286 PTPFNTTAF-IRAAGSLGYSAQRAMSLAEDLYTAGYVTYPRTDNTVYPEDLEPAELIEEL 344
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G A LLD + P G + HPPIHPT S S D +++YEL+
Sbjct: 345 SAASTFGTDAASLLDGDDEI--EPTEGDEETTDHPPIHPTGELPSASDLSDDEWEVYELI 402
Query: 422 VRHFLACVSQPAV------------GAETIVE--------------------INIAGEVF 449
VR FLA + PA A I E + G
Sbjct: 403 VRRFLATCADPATWERLRVVALANGEATPIAETADGLAALRNPDDATKPADLVADGGLRL 462
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+G+ +L Y DVY + S ++P G+ + + T+PP ++ L+
Sbjct: 463 KANGKRLLEAGYHDVYPYRSSDERIVPDVEVGETLSLSDRATEGKETQPPRRYGQSRLIE 522
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K +GT AT H I+KL DR Y D PT + EA+V ++ + +
Sbjct: 523 EMEKRQLGTKATRHRTIEKLYDRNYVESDPPR---PTRLAEAVVEAAEEFADRIVSEEMT 579
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
+ +E DM ++ G K+ +V + + F D L E+ R + G+ Q
Sbjct: 580 AQLEQDMAAIAAGEKAYDEVTEASRELLSRVFDD-------LTES------REAVGDHLQ 626
Query: 630 AAGEVVRQCGICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+ + + G C E ++++++KSR G+ VGC +P C + LP S + + TC
Sbjct: 627 NSLKADKTLGPCPECGADLLVRKSRQGSYFVGCDGYPDCEYTLPLP-STGKPLILDETCE 685
Query: 688 S 688
Sbjct: 686 D 686
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 603 DARLKKVKLLEAMGIFFE---RWSGGEDQQAAGEVVRQCGICQES---NMVLKKSRDGNL 656
D L+ VK+L F + E + EV+ C C E ++ +K+ R G+
Sbjct: 686 DHELRHVKMLAGRKTFVHGCPQCKADEADEQEDEVIGTCPDCGEEHGGDLAIKRLRSGSR 745
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
+VGC +P C ++ LP E VT TC
Sbjct: 746 LVGCTRYPDCDYSLPLP-RRGEIEVTDETCE 775
>gi|432331507|ref|YP_007249650.1| topoisomerase IA [Methanoregula formicicum SMSP]
gi|432138216|gb|AGB03143.1| topoisomerase IA [Methanoregula formicicum SMSP]
Length = 942
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 188/675 (27%), Positives = 309/675 (45%), Gaps = 64/675 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK A+ +A IL+ G ++ E + Y F +I + GH++E
Sbjct: 3 LIVAEKNISARRIAEILAG--GKKVAEQKDAGVSTYHFGDTI--------TVGLRGHVVE 52
Query: 71 LDFDERYRKWHS--CDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+DF+ Y+ W S P L A K VP +KK I L++ A++ + + D D EG
Sbjct: 53 IDFEPGYQNWRSETATPRSLIDAKTIK-VPTEKK-IVSLLQKLAKKADRVTIATDFDTEG 110
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E I E E+ RA N + + RARFSA+ ++E+ A + + A A +ARQ IDL
Sbjct: 111 ELIGKEAYELVRAANKKVTIDRARFSAITEQELKHAFSTTTELDFALAAAGEARQSIDLM 170
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GAS TRF ++ + + +LS G Q PTL +V+R EI A E++W +
Sbjct: 171 WGASLTRFISLAARRGGQN--------ILSVGRVQTPTLSMIVDREKEIVAFVPEKYWQL 222
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+ G + +A + Q P V +VR K P P T
Sbjct: 223 ALDFEKRGEVIEARHTNGRFHEKAAAEQARDRT-QSPL-VVKEVRTGTKQDRAPSPFDTT 280
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
A+R +S+ + M++AEDLY GFISYPRT+ + ++ GI+ P +
Sbjct: 281 TYIVAAAR-LGLSAANAMRIAEDLYMNGFISYPRTDNTVYPPSLDISGILNTLKTSP-FK 338
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+ ++ H + P G HPPIHPT ++ E D +++YELV+R FLA
Sbjct: 339 KDVEWVIAHRRPV---PTRGKKSSTDHPPIHPTGAATREM-LGDDAFRVYELVLRRFLAT 394
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
++ A + + GE ++T+G ++ + + VY F ++P + G++
Sbjct: 395 LAPDAQWKTLKILFDANGEEYTTTGGQLMEQGWHAVYPFSEARETLLPEFATGEKLPIRK 454
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+TLD T PP +++ L+ M++ G+GT +T H+ I KL+ R Y ++ A R PT +
Sbjct: 455 VTLDEKETLPPARYTQSKLIQRMEELGLGTKSTRHEVIAKLVSRKY-VEGAPLR--PTLV 511
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G + + + KP++ +ES M+ + +++ DV+ + F
Sbjct: 512 GRVVTESLEQHADIITKPDMTRTLESHMQLIKQSQRTREDVIRESRDMLHRAF------- 564
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVR----------QCGICQESNMVLKKSRDGNLMV 658
LEA ++Q G+ +R +C +C + +K R +
Sbjct: 565 -DQLEA------------NEQVIGDDIRNRTAEEMNLGKCPVCG-GTLAIKHLRGNTQFI 610
Query: 659 GCLAFPQCRNAVWLP 673
GC +P C + LP
Sbjct: 611 GCSRYPDCSFNIGLP 625
>gi|76801263|ref|YP_326271.1| DNA topoisomerase I [Natronomonas pharaonis DSM 2160]
gi|76557128|emb|CAI48702.1| DNA topoisomerase I [Natronomonas pharaonis DSM 2160]
Length = 832
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 187/691 (27%), Positives = 312/691 (45%), Gaps = 62/691 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L V EK + A+ +A ILS R N + + + + ++GH++
Sbjct: 3 LIVTEKDNAARRIAEILSDGSA-----STERRNGVNVYRWGDK------RCVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W P +L A V K +++I +TL++ A + D DREGE
Sbjct: 52 VDFPPEYEDWRDVQPVELVEADVVKKPT--QENIVRTLKQLAGEADRATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + ++R RFS++ + E+ +A D + A A +ARQ +DL G
Sbjct: 110 IGKEAYELIRE-EADIPIQRVRFSSITENEVKEAFATPDDLDFDLAAAGEARQIVDLLWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D +S G Q PTL +V+R EI+A + +++W +
Sbjct: 169 AALTRFLSLSANQLGDD--------FISVGRVQSPTLKLIVDREREIEAFDPDDYWELFA 220
Query: 251 SHKSEEGTATFSWM-------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
E T + + ++D + A +E TA V VR++ + PP
Sbjct: 221 DLAREGTTFEAQYFYREDGTEQERVWDESGAETAFETLRNAGTAVVESVRRRRRTDEPPE 280
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P +T + A+ +S++ M VAE+LY AG+I+YPRT+ + + ++
Sbjct: 281 PFNTTQY-ISAANGIGLSAQRAMSVAEELYTAGYITYPRTDNTVYPDDLDPEALLSAFTD 339
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
H + A+ +L A + P +G + HPPIHPT + S D +++YELVVR
Sbjct: 340 HYLFADDAE-MLRSADDI--EPTAGDEETTDHPPIHPTGEIPNKDDLSDDEWEVYELVVR 396
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
HF A V+ A V + G +G+ ++ Y +VY + S +P G+Q
Sbjct: 397 HFFATVADAAEWEHLKVVADADGCSLKANGKRLVEPGYHEVYPYRSTSENHVPAVEEGEQ 456
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
++ T+PP ++ L+ ++ G+GT +T H+ ++KL DR Y D
Sbjct: 457 LAIEDARIEEKQTQPPRRRGQSRLIEELESRGLGTKSTRHNTLQKLYDRGYIESDPPR-- 514
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PT + A+V + + + + +ESDM+ + G K L+
Sbjct: 515 -PTKLAMAVVEAAEQFADRIVDEEMTAQLESDMQAIVDGEKD----------------LE 557
Query: 604 ARLKKVKLLEAMGIFFE-----RWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNL 656
A ++ + L +G F+ R GE Q + + R G C E ++++++SR G+
Sbjct: 558 AVTEESRAL--LGRIFDELHDSREEIGEHLQESMKADRMLGPCPECGEDLLIRRSRKGSY 615
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCN 687
VGC FP CR + LP S E V C
Sbjct: 616 FVGCDGFPDCRYTLPLP-SQGEPTVIDEACT 645
>gi|123431270|ref|XP_001308100.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
gi|121889762|gb|EAX95170.1| DNA topoisomerase family protein [Trichomonas vaginalis G3]
Length = 523
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 226/458 (49%), Gaps = 26/458 (5%)
Query: 153 FSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDD 212
FSAL +I +A N + N+ A A R+EIDLR+G F+ FQT+ +K + + +
Sbjct: 15 FSALSYEDIIKAFNNPSNINRNEAMAAKIRREIDLRLGGVFSHFQTLKMKKY----IEEK 70
Query: 213 RNLVLSYGPCQFPTLGFVVERYWEIQAHES--EEFWTINCSHKSEEGTATFSWMRGHLFD 270
R VLSYGPCQ PTLGFVV + + Q + + E+ W I+ K + + W R HLF
Sbjct: 71 REEVLSYGPCQLPTLGFVVHSFLKAQKYNNYPEKCWKIDVHIKKGDKSLQIKWNRKHLFC 130
Query: 271 YTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAE 330
S + P+A VT ++ E P PL+T +Y ++ + M + E
Sbjct: 131 KVSCFGQFASMFDFPSAIVTDIQITESEVTKPQPLTTATHLINCCKYLKLKASRAMAITE 190
Query: 331 DLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
+LY GFISYPRTETDSF N I+ + G A +L+ + P G
Sbjct: 191 NLYNNGFISYPRTETDSFPDNFNFVDILTNLTIDREVGGMAYEVLNS----LQKPLKGNC 246
Query: 391 DDKAHPPIHP----TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
D AH PI+P ++F+S E + ++ L+ RHF A +S + E ++ G
Sbjct: 247 TDNAHTPIYPIVCPSEFNSKEEK------DVFYLICRHFFAVLSSNCLVTTKTTEFDVGG 300
Query: 447 EVFSTSGRVILA---KNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLS 503
E+F + I Y D ++ + + + + ++ + + + P LLS
Sbjct: 301 ELFHYKSKTIKQIGFMKYFDYFKIKEKSDI---DFSMNENIEVESIKMVNTSYKKPELLS 357
Query: 504 EADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYEL 563
E +L+ M+K IGTDAT H HI KL++R Y D N + PT +G ALV Y+ +
Sbjct: 358 EYELIDKMNKKKIGTDATFHQHISKLVERKYIKIDGNGKILPTAVGAALVAAYEKLRIGF 417
Query: 564 WKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+P L + +E ++E+S G + DVL + +++ F
Sbjct: 418 ARPQLMADLEQSLREISEGKRKSDDVLKDFIRRYMEIF 455
>gi|320582566|gb|EFW96783.1| DNA topoisomerase [Ogataea parapolymorpha DL-1]
Length = 311
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 176/299 (58%), Gaps = 14/299 (4%)
Query: 287 ATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD 346
ATV + + + P PL+T+E++K +R+F+ S++ T+ +AE LY +GFISYPRTETD
Sbjct: 6 ATVVSLDTKPTSNWAPLPLTTVEMQKDCARFFKFSAKQTLTIAEKLYNSGFISYPRTETD 65
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSG 406
F +L ++Q Q WG YAQ LL+ + +R P G HDDKAHPPIHP F+SG
Sbjct: 66 RFPKNMDLKKLIQSQTQSQTWGQYAQMLLNDGSK-FRQPREGSHDDKAHPPIHPVIFTSG 124
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
ES + + KLYE VVR FL C S+ A G T + + E F+TSG ++ NYL+VY
Sbjct: 125 ES-LNANERKLYEYVVRRFLGCCSKDATGLRTSLTLKWGTETFTTSGLIVKELNYLEVYV 183
Query: 467 FESW--GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHD 524
+ SW IP G + + L +G T PP L+E +L++ MD GIGTDAT+ +
Sbjct: 184 YNSWESSKSKIPEVQAGDKVTLASAQLSTGKTSPPSPLTEPELIALMDINGIGTDATIAE 243
Query: 525 HIKKLLDRFYAIKDANTR-------FAPTNIGEALVMGYDDMGYE---LWKPNLRSMME 573
HI+K+++R Y K+ R PT +G AL G+ +G++ L KP LR +E
Sbjct: 244 HIEKIIERSYVTKEDQGRGKSKSKVLIPTELGYALAEGFSQIGFDSMSLTKPFLRKNLE 302
>gi|229816419|ref|ZP_04446720.1| hypothetical protein COLINT_03472 [Collinsella intestinalis DSM
13280]
gi|229807961|gb|EEP43762.1| hypothetical protein COLINT_03472 [Collinsella intestinalis DSM
13280]
Length = 860
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 181/628 (28%), Positives = 294/628 (46%), Gaps = 46/628 (7%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L +P+ K+ E K+I + L+ A++ +++ D DREGE I + + + R V L
Sbjct: 119 LTWSPIIKNPAE--KEIIRVLKNLAKKADEVIIATDFDREGELIGSDALNMIREVAPELP 176
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML-LKNFHI 206
RRAR+SALI E+ +A NLV+ +Q ADA ++RQ IDL GA TR+ T+ F
Sbjct: 177 ARRARYSALIKGEVTEAFANLVELDQDLADAGESRQYIDLIWGAVLTRYLTLAKFGGF-- 234
Query: 207 DSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRG 266
V S G Q PTL VVER E A E++W I ++ + +
Sbjct: 235 -------GNVRSAGRVQTPTLALVVERERERMAFVPEDYWQIRGLGEASDQEFKVAHTTA 287
Query: 267 HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTM 326
D +A + E T TVT V ++ + + PP P +T L+ A+ +S TM
Sbjct: 288 RFTDKAAAEAAFSHVEGETTGTVTAVAKRSRKQQPPVPFNTTALQAAAAAE-GISPARTM 346
Query: 327 KVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE-QIGHPDWGPYAQRLLDHAAGLWRNP 385
++AE LY +GFISYPR + + ++ GIV+ G P P +++L AG P
Sbjct: 347 RIAESLYMSGFISYPRVDNTVYPKTLDIEGIVRGLASGTPALAPVCKKIL---AGPL-TP 402
Query: 386 GSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
G + HPPIHPT + KLY L+ R FLA + PA T + I++
Sbjct: 403 TRGKVETTDHPPIHPTG-QGDPTTLDGGQLKLYNLIARRFLATLMGPATIENTKLSIDVG 461
Query: 446 GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEA 505
GE F+ SG V++ + + Y + +P G + L++ T PP S+
Sbjct: 462 GEPFAASGDVLVEAGFREAYPYGLKRDEQLPALAEGDVIDVRDIKLEAKQTEPPARYSQG 521
Query: 506 DLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD-ANTRFAPTNIGEALVMGYDDMGYELW 564
L+ M+K G+GT +T +++R YA++ N P+ +G A++ + +
Sbjct: 522 KLVQEMEKRGLGTKSTR----ASIIERLYAVRYLKNDPIEPSQLGIAIIDALSEFAPRVT 577
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK-KVKLLEAMGIFFERWS 623
P++ + +++DM +V+ G ++ V+ + + + A LDA ++ K L EA+
Sbjct: 578 TPDMTAELDADMTKVAEGADTQEHVVDHS-RALLAGMLDALIEHKDDLGEAI-------- 628
Query: 624 GGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV------S 677
D A V C C + ++ ++ +GC+ +P C +P V
Sbjct: 629 --SDAVTADARVGACPTCGKDLVMKTSAKTRGSFIGCMGWPDCDVTYPVPSGVKVSPLEG 686
Query: 678 EAAVTTNTCNSCTPGPVYLIQFKFRQHE 705
EAAV C C + F+ + +E
Sbjct: 687 EAAV----CPECGAPRIKCQPFRQKAYE 710
>gi|383320605|ref|YP_005381446.1| DNA topoisomerase I [Methanocella conradii HZ254]
gi|379321975|gb|AFD00928.1| DNA topoisomerase I [Methanocella conradii HZ254]
Length = 700
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 191/663 (28%), Positives = 288/663 (43%), Gaps = 41/663 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK A +A IL ++ SR N + + R + + GH++E
Sbjct: 21 LIITEKHDAASKIASILFQDCVA------SRVNGVPVY----RSNKADAAVIGLAGHVVE 70
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF Y +W + P+ L APV VP KKDI LE A + + D DREGE
Sbjct: 71 LDFPPEYGRWTAHPPSALIAAPV-ITVP-TKKDIIGALESLAPSATRVTIATDYDREGEL 128
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + R ++ R R+S+ +EI A + A A + RQEIDL G
Sbjct: 129 IGVEAYNIVRRLS-KAPFDRVRYSSFARQEILGAFSKPTSLDFSLAAAGECRQEIDLVWG 187
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D LS G Q P L +V+R EIQA S+ +W +
Sbjct: 188 AALTRFVSLAGNRAGKD--------FLSVGRVQTPLLAIIVDREKEIQAFVSKPYWELAA 239
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+G + A+ IY+ + ATV + ++ K + P P ST EL
Sbjct: 240 VLLKGAEAFMARHKKGRFDNKEEAMAIYKKLGK--AATVKSILRESKKEPAPTPFSTTEL 297
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
K AS S+ M+ AE+LY G ISYPRT+ + +L V P+ +
Sbjct: 298 LKAAS-AIGFSAAGAMQAAEELYINGRISYPRTDNTVYPPTLDLRQAVGLFKASPE---F 353
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
AQ L+ A P G + K HPPI+P +S +++ + H+KLYELVVR F A +S
Sbjct: 354 AQSALELLAQRSLVPTKGKVESKDHPPIYPVACAS-KAQMDERHWKLYELVVRRFFATLS 412
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
P E++I+GE FS G+ + A + Y + V+P G +
Sbjct: 413 PPCEWDVVRAEVDISGEPFSADGKRLSAPGWRKHYPYGMPKEEVLPPLSVGDVLAVKKIN 472
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
L T PP + L+ M+K G+GT AT H+ + KL R Y + PT G
Sbjct: 473 LLEKKTEPPKRYGQGRLIELMEKLGLGTKATRHEALSKLYSRGYIEGNPPK---PTQTGI 529
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK 610
L+ + P++ +E DM ++ K DV+ + ++A F ++
Sbjct: 530 TLIDALRAHANAITTPDMTGKLEKDMDAIAESRLKKDDVVLESRKMLRAIFDQLEPRRAD 589
Query: 611 LLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAV 670
+ +A+ R D + C IC ++ + D + C FP+CRN
Sbjct: 590 IGKAL-----RAGAALDSD-----IGPCPICGSPLVIRETKADRRKFIACSGFPECRNTY 639
Query: 671 WLP 673
+P
Sbjct: 640 NIP 642
>gi|48477819|ref|YP_023525.1| DNA topoisomerase I [Picrophilus torridus DSM 9790]
gi|48430467|gb|AAT43332.1| DNA topoisomerase I [Picrophilus torridus DSM 9790]
Length = 753
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 172/598 (28%), Positives = 288/598 (48%), Gaps = 45/598 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK + +A ILSK ++ RS+ + EF ++ ++GH++E
Sbjct: 5 LIIAEKMDAGRRIAYILSKKTS---KQKRSKGSFYIEF----ESNNERNVLVPLSGHVLE 57
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
DF ++ W D L + + +V ++++ I TL+ + +++ D DREGE
Sbjct: 58 ADFPSDFKDWLKSDLNLLIDSRIVYNV-KNQRAIN-TLKN-FKDADNIIIATDYDREGEL 114
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I EV++ A N ++RA+FSAL ++EI+ A N ++ + AD+ AR+EIDL G
Sbjct: 115 IGTEVLKFLNAKN----IKRAKFSALTEKEINDAFSNTINVDYNLADSAQAREEIDLIWG 170
Query: 191 ASFTRFQTM----LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
A TRF ++ L K+F +S G Q PTLG + +R EI++ E+++
Sbjct: 171 AVLTRFFSIASNRLWKDF------------ISVGRVQTPTLGLIYKREMEIRSFVPEKYY 218
Query: 247 TINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
I + +K+ + A ++ L D +A I+ P V ++E Y P P
Sbjct: 219 KIKITFNKNRDFDAYYN---NELKDRKTAEKIFSEVKNMP-GRVKSFDKEEYYIYRPAPF 274
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T E + AS Y +S M +AE LY G ISYPRT+ ++ NL IV E++
Sbjct: 275 NTNEFLREAS-YLGISPARAMNIAEKLYMQGLISYPRTDNTVYNKSINLKSIV-EKLKKS 332
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
++ A +L L P G + HPPI+P S E + D+ K+YEL+VR F
Sbjct: 333 EFSMEADLVLSQEKIL---PSRGKTEATDHPPIYPVSVPSKE--LTGDYKKIYELIVRRF 387
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LA + + AV + I++ G F + G +I + D+Y+++S+ +P +
Sbjct: 388 LATLYKNAVAVRSTALIDVNGHDFISEGNIIKENGWYDIYKYKSYREYFVPDLEKNEVLN 447
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
L T PP + LL M+ +GT +T HD I KL R + + + P
Sbjct: 448 GRDYELQEKETEPPRRYDVSSLLKAMESLNLGTKSTRHDIIDKLYSRNFVTGNP-VKITP 506
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
+GE + D + +P + + +E DM +++ G K+K DV+ + + + D
Sbjct: 507 --LGEGFIKSIIDTNPRISEPEMTAELEMDMDKIASGTKTKDDVVNESRRMLHSVLND 562
>gi|223476951|ref|YP_002581633.1| DNA topoisomerase I [Thermococcus sp. AM4]
gi|214032177|gb|EEB73007.1| DNA topoisomerase I [Thermococcus sp. AM4]
Length = 719
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 206/734 (28%), Positives = 328/734 (44%), Gaps = 67/734 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKP+VA+ +A L++ + +R G+ Y YEF + +++ GHL
Sbjct: 4 LIIAEKPNVARKIAYALAEGKPVRKTIGKVSY---YEFTRDGK----KVIVAPAVGHLFS 56
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPED----KKDIKKTLEEEARRCQWLVLWLDCDR 126
L K + D+ PV +V E KD K L A++ ++ D D
Sbjct: 57 LAPKT---KTYGYPVFDIEWVPV--YVAEKGKGYAKDYIKALATLAKKADEFIVACDYDT 111
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQE 184
EGE I + ++ V+ +R +FSAL +++ +A NL +P N ADA AR
Sbjct: 112 EGEVIGYTALKYACGVDPSKA-KRMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHV 169
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + +R T +K + +VLS G Q PTL F+VER EIQ+ + +
Sbjct: 170 LDWYWGVNLSRALTSAIKR------ASGKWMVLSTGRVQGPTLKFLVEREKEIQSFKPKP 223
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I + E T ++ + ++D A I + + P A V KV +++ + PP P
Sbjct: 224 YWVIKMILEKEGKQYTATYEKDKIWDEEEAKRIVQEAKKGP-AFVEKVEVKQQKRNPPVP 282
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L++ A F S + T+++A+ LY+ G+ SYPRT + N I+Q
Sbjct: 283 FDLGTLQREAYSAFGYSPKKTLEIAQRLYEKGYTSYPRTSSQKLPKNLNFRSILQNLAKL 342
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P++ P+A LL P G +D AHP I+PT S+D +Y+LVVR
Sbjct: 343 PEYKPFAHELLGKGN---LKPVEGKKEDPAHPAIYPTGELPKPGELSKDEKNIYDLVVRR 399
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHGQQ 483
FLA +PAV V IN G F SG L + +L VY ++ + +++P + G+
Sbjct: 400 FLALFMEPAVRESVKVIINSNGHRFILSGARTLKEGWLKVYGKYVKFDEVILPQFREGEP 459
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + T+PP S A ++ M+ GIGT AT ++ L R Y + +
Sbjct: 460 VKVVQIKREKKKTKPPARYSPAAVIKKMEDLGIGTKATRAQILETLYSRGYI--EGKKKI 517
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
T +G +V + ++ L E M+E+ G K +++ Q+
Sbjct: 518 KVTPLGMRVVEALEKNVPDIVSVELTRAFEEKMEEIMAGKAKKDEIIEESKDQLIKILKV 577
Query: 604 ARLKKVK----LLEAMG---------IFFER------------WSGGEDQQAAGEVVRQ- 637
+ K++ LLE G + E+ SG E+ + A RQ
Sbjct: 578 FKEKELDIGKMLLETTGTGVTTSKDSVRVEKSKSQSGTSRASAKSGTEEPKKAKSPERQR 637
Query: 638 --CGICQE--SNMVLKKSRD-GNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPG 692
G C + ++VLK +R G VGC +P+C N + E T TC C
Sbjct: 638 LVLGKCPKCGGDLVLKYNRKTGKRFVGCSNWPKC-NVTYPILQRGEVIPTNKTC--CNGA 694
Query: 693 PVYLIQFKFRQHEI 706
PV I+ K R++EI
Sbjct: 695 PVVKIREKGREYEI 708
>gi|294495850|ref|YP_003542343.1| DNA topoisomerase I [Methanohalophilus mahii DSM 5219]
gi|292666849|gb|ADE36698.1| DNA topoisomerase I [Methanohalophilus mahii DSM 5219]
Length = 737
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 181/679 (26%), Positives = 298/679 (43%), Gaps = 45/679 (6%)
Query: 11 LNVAEKPSVAKSVAGILS--KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
L +AEK A+ +A ILS K Q RI S YEF G ++ ++GH+
Sbjct: 3 LIIAEKQIAARRIASILSPKKPQKKRISGIDS-----YEF-----GNDEKTIVIGLSGHI 52
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
++LDF Y W + +L A + + I L++ ++ + + D DREG
Sbjct: 53 VQLDFPPAYNNWQKVEAKELVDAEL--IITPTHAKIVSALKKLGKKATKVTIATDYDREG 110
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E I E + + + VN + RA +SA+ I +A +N + ADA +RQ IDL
Sbjct: 111 ELIGVEALNIVKGVNESIEYERAVYSAITPAAIKEAFENTTKIDFNLADAGHSRQVIDLV 170
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
GAS TRF ++ + LS G Q PTL +V+R E +A +W I
Sbjct: 171 WGASLTRFISLASRRLG--------KQFLSVGRVQSPTLALIVDREKEREAFVPTPYWEI 222
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
++ A ++ + E A V+ + K PP P +T
Sbjct: 223 YVDLSKNGEIFKIRHKNTRFWEKEEANRVFRLIGNE--ALVSSLETSTKEDKPPTPFNTT 280
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
E RA+ + + M++AE LY G+ISYPRT+ + S +L +EQI G
Sbjct: 281 EF-IRAANSIGFTPANAMRIAESLYTNGYISYPRTDNTVYPSTIDL----REQIEMFSKG 335
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+++ A P G + HPPI P + +++ +D +KLYELVVR F A
Sbjct: 336 HFSEYAKKLLAKKELKPTKGKKETTDHPPIFPASVAK-KAQLKEDEWKLYELVVRRFFAT 394
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
++ A V +I E F +G ++ + Y + + +IP G+
Sbjct: 395 FAENAEWETMKVRFDINEEEFRANGSRLVKPGWRWYYPYNAPEDRLIPALEEGEILPVND 454
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ T PP + L+ M+ +GT AT H+ I KL R Y PT
Sbjct: 455 KEILDKETNPPGRYGQGRLIKMMEDMALGTKATRHEIISKLYSRAYV---HGNPLQPTQT 511
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
A+V G ++ + +P++ S +E DM ++ GN S+ +VL + F + +
Sbjct: 512 AYAVVEGLENYAPTITRPDMTSSLEEDMDRIAEGNTSEENVLQQSRDMLTDVFKELEDNR 571
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
K+ E++ + +++ +C C ++++++SR G+ +GC +P C
Sbjct: 572 EKISESL----------REGLRKDKIIGKCPDCG-CDLIVRRSRRGSRFIGCEGYPDCTF 620
Query: 669 AVWLPGSVSEAAVTTNTCN 687
++ LP S VT TC+
Sbjct: 621 SLPLPKS-GHILVTDKTCD 638
>gi|124485959|ref|YP_001030575.1| hypothetical protein Mlab_1139 [Methanocorpusculum labreanum Z]
gi|124363500|gb|ABN07308.1| DNA topoisomerase, type IA, central domain protein
[Methanocorpusculum labreanum Z]
Length = 935
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 190/672 (28%), Positives = 308/672 (45%), Gaps = 58/672 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRI-REGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L +AEK VA+ +A L+ +++ R+G + + Y F+ ++ + + GH++
Sbjct: 3 LIIAEKNIVAERIAAFLAGKAKVQVTRDGAAAH---YVFDDTV--------VMGLRGHVV 51
Query: 70 ELDFDERYRKWHSCD--PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
E+DF E Y W S + P L +A + K P +KK I +++ ++ + + D D E
Sbjct: 52 EVDFVEGYNNWRSVEHPPRSLINADIVKK-PTEKK-IVGLMQKFGKKATRVTIATDYDTE 109
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I E E+ RA N + + RARFSA+ EI ++++ + A A ++RQ IDL
Sbjct: 110 GELIGKEAFELIRAANPKVPIDRARFSAITKDEIVKSIKEATSLDFNLASAGESRQIIDL 169
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDR--NLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
GAS TRF S+T R + +LS G Q PTL +V+R EI+A ++
Sbjct: 170 VWGASLTRFL----------SITAHRGADSILSVGRVQSPTLAMIVDREREIEAFVPTKY 219
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W ++ + + + G D A Y+ V EP VT V K+ P PL
Sbjct: 220 WMLSLATEKSGIGVEARHVHGRFTDSAEAKAAYDATV-EPL-RVTDVITGHKVDRAPTPL 277
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG-- 363
T L ASR +S+ + M AEDLY GFISYPRT+ ++ + EQ+
Sbjct: 278 DTTALIVGASR-LGISASYAMNRAEDLYMRGFISYPRTDNTAYPKSLK----ISEQLAIF 332
Query: 364 -HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
H + A + DH L P G + HPPI+PT ++ E +KLYE +V
Sbjct: 333 AHGAFSKEAGYVKDH---LRSVPTRGKKETTDHPPIYPTSLANREEIGDDVSWKLYEFIV 389
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A + A V + E ++ +G IL + +Y + ++P + G+
Sbjct: 390 RRFFATICIDAEWETMKVNLLAGSEPYTITGGRILEAGWRGIYPYSKAEENLLPAFTLGE 449
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
T D T+PP S++ L+ M++ G+GT +T H+ I KL R Y
Sbjct: 450 TLPLLAKTSDEKETQPPARYSQSRLIQRMEELGLGTKSTRHEVISKLSGRKYI---EGNP 506
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G A+ ++ + +P + +E M +++ G K+ VL+ + + F
Sbjct: 507 MKPTIVGRAVTESLEEFAGTITEPTMTKTLEEHMGDIAAGTKTINAVLSESRKMLTGIFD 566
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDG-NLMVGCL 661
D + + + ER ++Q G C +C + L+ R G + +GC
Sbjct: 567 DLEKNEAAIGRDL---MERT---REEQTIG----PCPVCGKP---LRIKRVGSSQFIGCS 613
Query: 662 AFPQCRNAVWLP 673
+P C LP
Sbjct: 614 GYPDCTFNTGLP 625
>gi|13540850|ref|NP_110538.1| DNA topoisomerase I [Thermoplasma volcanium GSS1]
gi|14324233|dbj|BAB59161.1| DNA topoisomerase 1 [Thermoplasma volcanium GSS1]
Length = 770
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 178/645 (27%), Positives = 293/645 (45%), Gaps = 53/645 (8%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNY-SIRGQPCHMLMTSVTGHLMEL 71
+AEK + +A LS G ++ ++ +Y L+ ++GH++E
Sbjct: 9 IAEKVDAGRRIAYFLS--------NGTAKARRVKGLSYIEFESNGKKTLLIPLSGHIVEA 60
Query: 72 DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENI 131
DF E + W D +L A + K V K +TL + +++ D DREGE I
Sbjct: 61 DFPENFSNWEKTDLKELIDADIVKKV--KNKSAYQTLSSFKGKADEIIIATDYDREGELI 118
Query: 132 AFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGA 191
E +++ + ++ RA+FS+L+ +EI A + +D N ADA DAR+ IDL GA
Sbjct: 119 GVEALDIIKEGQEKVL--RAKFSSLVGQEIRNAFEKPIDVNYNLADAADARESIDLIWGA 176
Query: 192 SFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCS 251
TRF ++ LS G Q PTL VVER EI+ + + FWTI+ +
Sbjct: 177 VLTRFFSLATGRLG--------RYFLSAGRVQTPTLAIVVEREREIENFKPQTFWTISIT 228
Query: 252 HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELE 311
+ +EG ++ + LFD A ++ + TV K + E+ P P ST E
Sbjct: 229 FQ-KEGEFQAAYEK-KLFDKDVANSVFS-SINGRDGTVIKFEKHEESIRRPTPFSTTEFL 285
Query: 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYA 371
+ ASR M ++ M +AE LY G ISYPRT+ + NL ++Q + + Y
Sbjct: 286 REASRIGIMPTK-AMSIAESLYTRGLISYPRTDNTVYPRAINLRNVLQ-KFSKSKYSNYV 343
Query: 372 QRLLDHAAGLWRN--PGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+ +L W P G + HPPI+P + E + D+ ++Y+L++R F++ +
Sbjct: 344 EEILG-----WEKIIPSRGRTETTDHPPIYPVEMPKEELKG--DYARIYDLILRRFISTL 396
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
+ EI++ G F G ++ VY + S +P G+ T
Sbjct: 397 YRDGRKTVKEAEIDVNGYKFLARGSQTTDLGWMAVYGYSSRDEF-MPDLSEGEILHGTNW 455
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
L+ T+PPP A LL M+ +GT +T HD I KL+DR + I+ R PT +G
Sbjct: 456 LLNEDQTKPPPRYDMASLLKKMEDLNLGTKSTRHDIIGKLIDRGF-IEGNPVR--PTGLG 512
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD--ARLK 607
A + + + P++ + +E DM ++ SK +V+ + + + D +
Sbjct: 513 IAFIDAVKSVNSSIADPDMTAKLEQDMDKIERSLMSKQEVVDESKKMLHSVLGDFINKAD 572
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSR 652
VK + GI AGE + +C + N++L K +
Sbjct: 573 DVKSIINTGI------------NAGEAMGKCPFHPDHNLILSKDK 605
>gi|328955028|ref|YP_004372361.1| DNA topoisomerase I [Coriobacterium glomerans PW2]
gi|328455352|gb|AEB06546.1| DNA topoisomerase I [Coriobacterium glomerans PW2]
Length = 869
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 203/751 (27%), Positives = 322/751 (42%), Gaps = 96/751 (12%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYE---FNYSIRGQPCHMLMTSVTG 66
VL +AEK AK +A +L+ +G + +K+Y + +S+ G+ + + G
Sbjct: 2 VLVIAEKNIAAKKIAQLLA--------DGAPKTDKVYSTQVYRFSVDGE--EWVSMGLAG 51
Query: 67 HLMELDFDERY-----RKWHSCD------PAD---------------------------- 87
H++ DF E R W+S PAD
Sbjct: 52 HILAPDFPEAILFDAERGWYSLTDDGEILPADVPDGLARPPYDSKRRPYLPDGINIKSWK 111
Query: 88 ------LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRA 141
L APV KH E K+I + L+ A++ +++ D DREGE I + + R
Sbjct: 112 VDSLPYLTWAPVVKHPAE--KEIIRVLKNLAKKADSIIIATDFDREGELIGADALSQVRE 169
Query: 142 VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML- 200
V + + RAR+SALI E+ A NLV+ ++ ADA ++RQ IDL GA TR+ T+
Sbjct: 170 VAPDVPVARARYSALIKGEVCGAFDNLVELDRDLADAGESRQHIDLIWGAVLTRYLTLAK 229
Query: 201 LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTAT 260
F V S G Q PTL VV R E A E++W I S +
Sbjct: 230 FGGF---------GNVRSAGRVQTPTLALVVARERERLAFVPEDYWQIRGIGASGDTAFK 280
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
+ D A + + + T+ KV + + + PP P +T L+ A+ +
Sbjct: 281 IAHATARFTDEQKAKTAFAHVQGKTSGTIVKVATRARKQAPPAPFNTTSLQAAAASEG-I 339
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE-QIGHPDWGPYAQRLLDHAA 379
S TM++AE LY +G ISYPR + + +L IV P P +++L A
Sbjct: 340 SPARTMRIAESLYMSGLISYPRVDNTVYPPSEDLAAIVSGLAASSPALAPVCKKVL---A 396
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETI 439
G + P G + HPPIHPT S ES KLY L+ R FLA + PA T
Sbjct: 397 GPMK-PTRGKTETTDHPPIHPTGQGSPES-LDGGQRKLYNLIARRFLATLMGPATIENTK 454
Query: 440 VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPP 499
+ I++AGE + SG V++ + + Y + +P G L L++ T PP
Sbjct: 455 LSIDVAGEPLTASGDVLVTAGFREAYPYGLKRDEQLPPLSAGDVIEVRDLALEAKQTEPP 514
Query: 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
S+ L+ M+K G+GT +T I++L Y D P+ +G A++
Sbjct: 515 ARYSQGRLVQEMEKRGLGTKSTRASIIERLYQVRYLKNDP---IEPSRLGMAIIDALAAY 571
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFF 619
+ P++ + ++ DM +V+ G ++A V+ + + + K L EA+
Sbjct: 572 APRITTPDMTAELDGDMTKVAEGADTEAHVVDHSRALLAGLIDNLIDHKDDLGEAI---- 627
Query: 620 ERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRD--GNLMVGCLAFPQCRNAVWLPGSVS 677
D A V C C ++V+K S GN +GC+ +P+C +P V
Sbjct: 628 ------SDAVTADAKVGVCPTCGR-DLVMKASAKTRGNF-IGCMGWPECDVTYPVPSGVK 679
Query: 678 EAAVTTN--TCNSCTPGPVYLIQFKFRQHEI 706
+ + C C + F+ + +E+
Sbjct: 680 LEPIEGDDGVCPECGAPKIKCKPFRSKAYEV 710
>gi|221195634|ref|ZP_03568688.1| DNA topoisomerase 1 [Atopobium rimae ATCC 49626]
gi|221184400|gb|EEE16793.1| DNA topoisomerase 1 [Atopobium rimae ATCC 49626]
Length = 842
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 200/749 (26%), Positives = 325/749 (43%), Gaps = 88/749 (11%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFN-YSIRGQPCHMLMTSVTGHL 68
+L V EK A+ +A +LS++ G+ +K+Y Y R + + GH+
Sbjct: 2 ILIVTEKNDAAQQIARLLSES-------GKPEADKVYNTPVYRFRKGGEEYVTIGLRGHI 54
Query: 69 MELDFDERY-----RKWHSCD------PAD------------------------------ 87
++ DF + W+ PAD
Sbjct: 55 LQPDFPTQLLFDADEGWYGATEDGEHIPADVPDGLARPPYKEKRKPYLKAGIDLKGWKIP 114
Query: 88 ----LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVN 143
L APV K E K+I ++L+ A++ +++ D DREGE I + + +V
Sbjct: 115 SLPYLIWAPVEKEPAE--KEIIRSLKNLAKKSDAVIIATDFDREGELIGSDALAQVLSVK 172
Query: 144 CHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKN 203
L + RAR+SA EI A NLV+ + A A ++RQ IDL GA TR+ T +
Sbjct: 173 ADLPVSRARYSAFTKYEIDTAFNNLVELDYDLAAAGESRQFIDLIWGAVLTRYLTCV--- 229
Query: 204 FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSW 263
+ R S G Q PTL VVER E A E++W I+ E + ++
Sbjct: 230 -RFGGFGNTR----SAGRVQTPTLALVVERERERLAFTPEDYWVISGEATPLEDNSDATF 284
Query: 264 MRGH----LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFR 319
H ++ A +++ ++ ATV ++ + + + PP P +T L+ A+
Sbjct: 285 KITHATSRFWNKEEADAVFDAVKEQHQATVVRIESKSRKQQPPAPFNTTSLQAAAASEG- 343
Query: 320 MSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAA 379
+S TM++AE LY G ISYPR + + S +L G V+ P + + LL AA
Sbjct: 344 LSPARTMRLAESLYMDGLISYPRVDNTVYPSSLDLKGCVRTLSSVPQYAGVCKTLL--AA 401
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETI 439
G + G + HPPI+PT ++ +++ +KLY L+ R FLA + PA A T
Sbjct: 402 GKL-SATRGKQESTDHPPIYPTA-AADQNKLQPAAWKLYNLIARRFLATLMGPATIAGTK 459
Query: 440 VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPP 499
+ ++IAG+ F +G V+ K + +Y F +P G+ T L LD+ T PP
Sbjct: 460 ITLDIAGQPFVANGNVLAEKGFRAIYPFGLKKDDQLPELSQGEVVDVTKLNLDAKQTEPP 519
Query: 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
S+ L+ M+K G+GT AT I L R Y D P+ +G A++
Sbjct: 520 ARYSQGKLIQEMEKRGLGTKATRASIIDTLYQRKYLKNDP---VEPSQLGMAIIDALMQF 576
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK-KVKLLEAMGIF 618
+ N+ + +E DM +VS G ++ V+ + + + A +D ++ + L EA+
Sbjct: 577 VPRITTSNMTAELEEDMTKVSEGKDTRDGVVTHS-RTLLADMIDTLIEHEEDLSEAIA-- 633
Query: 619 FERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP-GSVS 677
D A V C C + +V ++ VGC+ +P C LP G +
Sbjct: 634 --------DAVTADAKVGVCPKCGKDLVVKTSAKTRGSFVGCMGWPDCDVTYPLPQGRIE 685
Query: 678 EAAVTTNTCNSCTPGPVYLIQFKFRQHEI 706
C C + + F+ R +E+
Sbjct: 686 PLEGEAGVCPECGAPRIKVQPFRQRAYEM 714
>gi|219851924|ref|YP_002466356.1| DNA topoisomerase type IA central domain-containing protein
[Methanosphaerula palustris E1-9c]
gi|219546183|gb|ACL16633.1| DNA topoisomerase type IA central domain protein [Methanosphaerula
palustris E1-9c]
Length = 938
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 191/696 (27%), Positives = 319/696 (45%), Gaps = 80/696 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIRE--GRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
L + EK A +A IL+ + +++ G S Y+ FN ++ + + GH+
Sbjct: 3 LIITEKNIAADRIAHILAGKTYVEVKKDGGVSTYS----FNDTV--------VVGLRGHV 50
Query: 69 MELDFDERYRKWHS--CDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+E+DF+ Y W S P L A K P DKK I +++ ++ + + D D
Sbjct: 51 VEVDFEPGYTNWRSEVNTPRSLISARTIK-APTDKK-IVTLIQKLTKKADHVTIATDFDT 108
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE I E ++ +AV + + R+RFSA+ + EI A + + A A +ARQ ID
Sbjct: 109 EGELIGKETYDLVKAVKPDVRVDRSRFSAITEEEIQTAFAAPAELDFALAAAGEARQLID 168
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
L GAS TRF ++ +N +LS G Q PTL +V+R EI+A E +W
Sbjct: 169 LIWGASLTRFISLAAHR-------GGKN-ILSVGRVQSPTLAMMVDREKEIEAFVPEPYW 220
Query: 247 --TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT---VTKVRQQEKLKYP 301
T++ + E A + R +T I E +E T VT+V++ K+
Sbjct: 221 VLTVDSNKDGEPVLARHTTAR-----FTDVAIAEE--AKEATRAPLMVTEVKEGSKVDRA 273
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P T A R S+ + M++AEDLY G+ISYPRT+ + +L+G+++
Sbjct: 274 PTPFDTTGFIVAAGR-LGFSAANAMRIAEDLYMHGYISYPRTDNTIYPRSLDLNGVLKT- 331
Query: 362 IGHPDWGPYAQRLLDHAAGLWRN------PGSGGHDDKAHPPIHP----TKFSSGESRWS 411
Q+ +A +W P G HPPIHP T+ G+ RW
Sbjct: 332 ---------LQKTELSSAVIWVMANRRPVPTQGKKSTTDHPPIHPSGAATRAELGDERW- 381
Query: 412 QDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG 471
K+YELVVR FLA +S A V E ++T+G +L + VY +
Sbjct: 382 ----KIYELVVRRFLATLSPDARWMTMKVLFTAGNEPYTTTGATLLEAGWRTVYPYSDAT 437
Query: 472 GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
+P + G + LD T+PPP +++ L+ M++ G+GT +T H+ I KL+
Sbjct: 438 EHPLPRFAVGDSLPIEQVNLDRKETQPPPRYTQSRLIQQMEELGLGTKSTRHEVIGKLVG 497
Query: 532 RFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
R Y PT +G A++ +D + +P++ +++ M+++ +++ DV+
Sbjct: 498 RKYI---EGNPLRPTLVGRAVIESLEDHAAAITRPDMTQTIDAHMQQIKERKRTRDDVVT 554
Query: 592 NCLQQMKACFLDARLKKVKLLE-AMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKK 650
+ F + + ++ E MG E ++ C +C S++ +
Sbjct: 555 ESRAMLNRAFDELEEHQSQIGEDIMGRTVEEM-----------ILGPCPVCG-SDLRIHH 602
Query: 651 SRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
R+ + +GC +P CR + LP + A+ T+T
Sbjct: 603 IRNSSQFIGCTRYPDCRFNIGLPLTQWGWAIRTDTV 638
>gi|16081238|ref|NP_393542.1| DNA topoisomerase I [Thermoplasma acidophilum DSM 1728]
gi|14423969|sp|Q9HM08.1|TOP1_THEAC RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|10639209|emb|CAC11211.1| DNA topoisomerase III beta related protein [Thermoplasma
acidophilum]
Length = 770
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 166/587 (28%), Positives = 282/587 (48%), Gaps = 37/587 (6%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+AEK + +A LS G +++ R++ EF Y+ G +++ ++GH++E D
Sbjct: 8 IAEKADAGRRIAYFLS---GGQVKSHRAKGTSYLEFEYN--GSKTYLI--PLSGHIVEAD 60
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIA 132
F+ Y W+ D +DL A + K++ K +TL+ + + +V+ D DREGE I
Sbjct: 61 FESGYSDWNKIDLSDLIDARIVKNI--KNKVAYQTLQAFRGKVEEIVIATDYDREGELIG 118
Query: 133 FEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGAS 192
E +++ + + RRA+FSAL EI + +NL+ N ADA DAR+ IDL G+
Sbjct: 119 VEALDIIKEGKEEI--RRAKFSALTKNEILDSFKNLIGVNYSLADAADARESIDLIWGSV 176
Query: 193 FTRFQTMLLKNFHIDSVTDDR--NLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
TRF SVT R LS G Q PTL VV+R EIQ+ E +WTI+
Sbjct: 177 LTRFF----------SVTTGRLGKSFLSAGRVQTPTLAIVVDREREIQSFRPERYWTISI 226
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+ ++G + ++ D +A IYE ++ V+ +E P P ST E
Sbjct: 227 TF-DKDGQFKARYPE-NIKDQDTAEKIYE-AIKGKNGRVSSYTSKEDHIRRPAPFSTTEF 283
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
+ ASR M ++ M +AE+LY G ISYPRT+ + NL +++ ++ + + Y
Sbjct: 284 LREASRIGIMPTK-AMSIAENLYMRGLISYPRTDNTVYPRSINLKSVLK-KLENTAYSKY 341
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
+ + L P G + HPPI+P S + + D+ ++Y+L++RHFL+ +
Sbjct: 342 VKEIETFDRIL---PSRGRIETTDHPPIYPV--DSPKEQLKGDYGRVYDLILRHFLSTLY 396
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
+ EI + G F +G+ + + ++Y ++ + +P G+
Sbjct: 397 RDGKKTVAEAEIYVNGYTFKAAGQHTTDRGWTEIYGYDP-KDVYLPELTEGEDLKAIDWN 455
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
+ T+PPP + LL M++ +GT +T HD I KL++R + PT +G
Sbjct: 456 IQREETKPPPRYDMSSLLKKMEELNLGTKSTRHDIIGKLIERGFI---EGNPVKPTPLGM 512
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
A + + + P + + +E DM + SK DV+ + +
Sbjct: 513 AFIDAVRSVNSHIADPEMTAKLEEDMDRIEKNEMSKNDVVEESKKML 559
>gi|147919417|ref|YP_686844.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
gi|110622240|emb|CAJ37518.1| DNA topoisomerase I [Methanocella arvoryzae MRE50]
Length = 728
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 190/670 (28%), Positives = 304/670 (45%), Gaps = 54/670 (8%)
Query: 11 LNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L + EK AK +A IL K EG S Y+ + SI G ++GH++
Sbjct: 3 LIITEKNITAKKIAQILFGKGTKETKVEGVSVYS---SGDTSIVG---------LSGHIV 50
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
+DF E+Y W P DL A K I L++ ++ + + D DREGE
Sbjct: 51 NIDFPEQYNNWSVTAPKDLIRAETEMRYTHKK--IATALKKLSKDATSVTIATDYDREGE 108
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
I E + + RA+FSA+ EI +A N V + A A +ARQ+IDL
Sbjct: 109 LIGVEAYRIISGFKPDIKFDRAKFSAITKPEIDRAFSNRVPLDFNLAAAGEARQKIDLVW 168
Query: 190 GASFTRFQTM----LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
GA+ TR+ ++ L K+F LS G Q P L +V+R EI+A S +
Sbjct: 169 GAALTRYISLTCGRLGKSF------------LSVGRVQTPLLALLVDREKEIKAFVSTPY 216
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I + + GT + + F+ + T TV + ++ + P P
Sbjct: 217 WEIYATLGN--GTDFTAKHECNRFEDKKKADSVRAKLGS-TGTVVEYKKDARSDAAPIPF 273
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
ST E RA+ S+ + M++AE+LY G+ISYPRT+ + S NL ++Q
Sbjct: 274 STTEF-IRAASSIGFSAANAMRIAENLYVNGWISYPRTDNTVYPSSLNLRDVLQ-NFAAG 331
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
++G YA++LL + P G + HPPI+P S+ +S + D +++YELVVR F
Sbjct: 332 EFGEYARKLLAMKTLV---PTRGKKETTDHPPIYPVS-SAKKSDMADDEWRVYELVVRRF 387
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
A ++ A ++I+GE F SG + + Y + V+P G+
Sbjct: 388 FATLAPAATWETRNTTVDISGEKFKASGSKLTEAGWRYYYPYGMPKEEVLPALEVGETLK 447
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ + +T+PP + L+ M+ G+GT +T H+ I+KL R Y + P
Sbjct: 448 VKKIEMPEKMTQPPTRYGQGRLVKMMEDLGLGTKSTRHEAIQKLYARNYVHGNPP---QP 504
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
TN A+V + + KP++ S +E DM ++ G K K D + + Q M
Sbjct: 505 TNTAIAVVDALERYADLITKPDMTSKLEQDMDLIADG-KIKEDAVVDESQNMLETIFGVL 563
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
K E + F D +++ +C C S+++++KS+ G +GC +P
Sbjct: 564 DKNHD--EIREVLF-------DGLREDKILGKCQTCG-SDLMVRKSKKGGRFIGCTGYPN 613
Query: 666 CRNAVWLPGS 675
C ++ LP S
Sbjct: 614 CTFSLPLPPS 623
>gi|210630404|ref|ZP_03296439.1| hypothetical protein COLSTE_00323 [Collinsella stercoris DSM 13279]
gi|210160486|gb|EEA91457.1| DNA topoisomerase [Collinsella stercoris DSM 13279]
Length = 863
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 204/753 (27%), Positives = 329/753 (43%), Gaps = 103/753 (13%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYE---FNYSIRGQPCHMLMTSVTGH 67
L VAEK A+ +A +L+ G+ + +K+Y + +++ G+ + + GH
Sbjct: 16 LVVAEKNIAAQKIAQLLADA-------GKPKNDKVYNTQVYRFTVDGE--DWVSMGLAGH 66
Query: 68 LMELDFDE-----RYRKWHSCD------PAD----------------------------- 87
++ DF + + W+S PAD
Sbjct: 67 ILAPDFPDEILFDKQNGWYSVSAEGEVLPADVPDGLARPPYDTKRKPFLANGISIKGWKV 126
Query: 88 -----LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAV 142
L AP+ K E K+I + L+ A++ +++ D DREGE I + + + R V
Sbjct: 127 ESLPYLTWAPIVKLPAE--KEIIRVLKNLAKKADEVIIATDFDREGELIGADALNMVREV 184
Query: 143 NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML-L 201
L RRAR+SALI E+ +A NLV+ +Q ADA ++RQ IDL GA TR+ T+
Sbjct: 185 APELPARRARYSALIKGEVTEAFNNLVELDQDLADAGESRQYIDLIWGAVLTRYLTLAKF 244
Query: 202 KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATF 261
F V S G Q PTL VVER E A E++W I ++
Sbjct: 245 GGF---------GNVRSAGRVQTPTLALVVERERERMAFVPEDYWQIRGMGEASGQEFKI 295
Query: 262 SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMS 321
+ D +A + T TVT V ++ + + PP P +T L+ A+ +S
Sbjct: 296 AHTTVRFTDKAAAEAAFAHVSGAETGTVTAVAKRSRKQQPPVPFNTTALQAAAAAEG-IS 354
Query: 322 SEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE-QIGHPDWGPYAQRLLDHAAG 380
TM++AE LY +GFISYPR + + ++ GIV+ G P P +++L AG
Sbjct: 355 PARTMRIAESLYMSGFISYPRVDNTVYPKTLDIEGIVKGLASGTPALAPVCKKVL---AG 411
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
P G + HPPIHPT + KLY L+ R FLA + PA T +
Sbjct: 412 PL-TPTRGKVETTDHPPIHPTG-QGDPTTLDGGQLKLYNLIARRFLATLMGPATIENTKL 469
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
I++AGE F+ SG V++ + + Y + +P G + L++ T PP
Sbjct: 470 SIDVAGEPFAASGDVLVEAGFREAYPYGLKRDEQLPALAEGDVIDVRDIKLEAKQTEPPT 529
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD-ANTRFAPTNIGEALVMGYDDM 559
S+ L+ M+K G+GT +T +++R YA++ N P+ +G A++
Sbjct: 530 RYSQGKLVQEMEKRGLGTKSTR----ASIIERLYAVRYLKNDPIEPSQLGIAIIDALSQF 585
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK-KVKLLEAMGIF 618
+ P + + +++DM V+ G K D + + + + A LDA ++ K L EA+
Sbjct: 586 APRVTTPEMTAELDADMTMVAEG-KDTQDHVVDHSRALLAGMLDALIEHKDDLGEAI--- 641
Query: 619 FERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVS- 677
D A V C C + ++ ++ +GC+ +P C +P V
Sbjct: 642 -------SDAVTADARVGACPKCGKDLVMKTSAKTRGSFIGCMGWPDCDVTYPVPSGVKV 694
Query: 678 -----EAAVTTNTCNSCTPGPVYLIQFKFRQHE 705
EAAV C C + F+ + +E
Sbjct: 695 SPLEGEAAV----CPECGAPRIKCQPFRQKAYE 723
>gi|339444649|ref|YP_004710653.1| hypothetical protein EGYY_10740 [Eggerthella sp. YY7918]
gi|338904401|dbj|BAK44252.1| hypothetical protein EGYY_10740 [Eggerthella sp. YY7918]
Length = 850
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 177/632 (28%), Positives = 289/632 (45%), Gaps = 46/632 (7%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L +AP++K +P++K +I ++L+ A++ +++ D DREGE I + + + VN
Sbjct: 117 LVYAPIKK-LPKEK-EIIRSLKNLAKKADSVIIATDFDREGELIGSDALSCIQEVNPTAP 174
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHID 207
+ RAR+SA EI A NLV+ + A A +RQ+IDL GA TR+ T++ + +
Sbjct: 175 VSRARYSAFTKEEITHAFSNLVELDTNLASAGASRQDIDLIWGAVLTRYLTLVKFAGYGN 234
Query: 208 SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGH 267
V S G Q PTL +V R E A E++W I + + S
Sbjct: 235 --------VRSSGRVQTPTLALIVARERERLAFVPEDYWVIRGGFDAAAQSGPTSGDGEL 286
Query: 268 LFDYTSAVIIYEMCVQE----------PTATVTKVRQQEKLKYPPYPLSTIELEKRASRY 317
F+ A +++ + +ATV+ V ++++ PP P +T L AS
Sbjct: 287 AFEAPHATARFKVEAEAQAAMAHVEGATSATVSAVEKKKRTVAPPVPFNTTSLMAAASAE 346
Query: 318 FRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDH 377
+S TM++AE LY G+ISYPR + + S +L V+ G+P + PY + LL
Sbjct: 347 -GLSPARTMRIAESLYMDGYISYPRVDNTVYPSSLDLAETVKAISGNPAYAPYCKELL-- 403
Query: 378 AAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAE 437
A G G + HPPI+PT ++ + D YKLY L+ R FLA +S+ AV
Sbjct: 404 AKGKL-TATRGKKETTDHPPIYPTAKATPDDLAPAD-YKLYNLIARRFLATLSEAAVVEG 461
Query: 438 TIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTR 497
T V +++AGE F G V++ + + +Y + +P GQQ T T
Sbjct: 462 TKVTLDVAGEPFVAKGDVLVKQGFRAIYPYGLKKDEQLPALTEGQQIAFNGATCTKKQTE 521
Query: 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANTRFAPTNIGEALVMGY 556
PP S+ L+ M+K G+GT +T H +++R YA+K N P+ +G A+
Sbjct: 522 PPARYSQGKLIQEMEKLGLGTKSTRHS----IIERLYAVKYIQNDPIEPSQLGMAVCDAL 577
Query: 557 DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANC--LQQMKACFLDARLKKVKLLEA 614
D + P + + +E +M ++ G +KADV+ L + L ++VK A
Sbjct: 578 DKFAPHITHPEMTAELEEEMDNIAEGRTTKADVVTTSRNLLAEELASLLPHSEEVKDALA 637
Query: 615 MGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPG 674
+ + + G C C + + + + +GC +P C LP
Sbjct: 638 DAVAADAYVG------------PCPKCGKDLQLRASQKTRGMFIGCAGWPDCDVTFPLPK 685
Query: 675 SVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEI 706
EA C +C V + F+ + I
Sbjct: 686 GKVEA--VPEPCPTCGMPQVKVTAFRSKPRTI 715
>gi|238005926|gb|ACR33998.1| unknown [Zea mays]
Length = 344
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 132/182 (72%), Gaps = 5/182 (2%)
Query: 571 MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGG-EDQQ 629
MME+DMK VSVG KSK++VL +CLQQMKACFLDAR+KK KLL+AMG FF R + + Q
Sbjct: 1 MMEADMKSVSVGTKSKSEVLESCLQQMKACFLDARVKKAKLLDAMGTFFARSNRPINETQ 60
Query: 630 AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
EVVR CG C S M+LK+ G MVGC ++PQCRN VWLPGS+SEAAVT C C
Sbjct: 61 NPVEVVRPCGACNGSEMLLKRRASGEFMVGCRSYPQCRNVVWLPGSLSEAAVTNQVCPIC 120
Query: 690 TPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSR----IPARGRGP 745
PGPVY IQFKFR+ +IPP F+V+HLGC+GGCD+ L+ L+EI GSR PARG P
Sbjct: 121 APGPVYKIQFKFRRRDIPPNFDVDHLGCVGGCDDILKDLMEISRFGSRSQAATPARGPTP 180
Query: 746 TA 747
Sbjct: 181 NG 182
>gi|91772172|ref|YP_564864.1| DNA topoisomerase I [Methanococcoides burtonii DSM 6242]
gi|91711187|gb|ABE51114.1| DNA topoisomerase [Methanococcoides burtonii DSM 6242]
Length = 743
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 192/708 (27%), Positives = 314/708 (44%), Gaps = 48/708 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK AK +A IL+ + ++R + + F Y +++ ++GH+++
Sbjct: 3 LIIAEKHIAAKRIAKILAPKEPKQVR-----VSGMDTFEYKNPDAEDRIIVMGLSGHIVQ 57
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF + Y W D +L A V P K I L + + + + D DREGE
Sbjct: 58 LDFPKAYNNWQKIDANELIDAEVIT-TPTHVK-IVAALRKLGKEATHVTIATDYDREGEL 115
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + + R VN + R +SA+ EI A N + ADA +RQ IDL G
Sbjct: 116 IGVEALNIIRKVNPDVEFDRVFYSAITKTEIEGAFANPASIDFDLADAGHSRQVIDLVWG 175
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
AS TR+ ++ S L LS G Q PTL +V++ E QA S+ +W +N
Sbjct: 176 ASLTRYLSI--------SAGRLGKLFLSVGRVQSPTLALIVDKEKERQAFVSKPYWEVNA 227
Query: 251 SHK-SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+ K +++ ++ A + E+ + A+V+ V +K P P +T E
Sbjct: 228 TLKDNDDALVNVQHKNSKFWEKEEADAVMEVIGDK--ASVSSVDSSKKTDKVPTPFNTTE 285
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
AS ++ + M++AE LY GFISYPRT+ + + +L + E +
Sbjct: 286 FIGAASS-IGFTASNAMRIAESLYTNGFISYPRTDNTVYPASIDLRAQI-EIFSKGPFRE 343
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
YAQ+LL + P G + HPPI+P + +S ++ +KLYELVVR F A
Sbjct: 344 YAQKLLAKDELV---PTRGKKETTDHPPIYPASLAK-KSELNEQDWKLYELVVRRFFATF 399
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
+ A V +I+GE F +G ++ + + Y + + ++P G T
Sbjct: 400 ADEAEWETMKVRFDISGEEFKANGARLVHQGWRWYYPYNAPQDRLLPALSEGDILDVTGK 459
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ T+PP + L+ M+ G+GT AT H+ I KL R Y PT
Sbjct: 460 EMLDKETQPPGRYGQGRLIKLMEDLGLGTKATRHEIISKLYSRAYV---HGNPLQPTKTS 516
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
A++ + + K ++ S +E DM ++ G + +VL + F +
Sbjct: 517 FAVIEALEKYAPTITKHDMTSQLEEDMDSIAEGKVKEDNVLKESRTMLHEVFTELANNSE 576
Query: 610 KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
+ E++ R ED+ V+ +C C S +++++S+ G+ +GC +P C +
Sbjct: 577 NISESL-----RAGLREDK-----VIGECSECG-SKLMVRRSKRGSRFIGCNGYPDCNFS 625
Query: 670 VWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGC 717
+ LP S + VT TC V +I PG LGC
Sbjct: 626 LPLPKS-GQIIVTEKTCEEHGINHVKIIN---------PGKRPWELGC 663
>gi|302336222|ref|YP_003801429.1| DNA topoisomerase I [Olsenella uli DSM 7084]
gi|301320062|gb|ADK68549.1| DNA topoisomerase I [Olsenella uli DSM 7084]
Length = 839
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 179/626 (28%), Positives = 285/626 (45%), Gaps = 38/626 (6%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L AP+ K E + I + L+ A++ +V+ D DREGE I + + R V +
Sbjct: 119 LVWAPIEKLPAE--RGIIRALKNLAKKADSIVIGTDFDREGELIGSDALRQMRQVAPDVP 176
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML-LKNFHI 206
+ RAR+SA EI A NLVD +Q ADA ++RQ IDL GA TR+ TM F
Sbjct: 177 VSRARYSAFTKAEIDHAFANLVDLDQDLADAGESRQYIDLIWGAVLTRYLTMARFGGF-- 234
Query: 207 DSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN-----CSHKSEEGTATF 261
V S G Q PTL VVE+ E QA E++W ++ E+
Sbjct: 235 -------GNVRSAGRVQTPTLALVVEKERERQAFVPEDYWVLSGMLAPAGTADEDARFKA 287
Query: 262 SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMS 321
+ D +A + TATVT V ++ + PP P +T L+ A+ +S
Sbjct: 288 THTTARFKDQAAAQAAWSHVRDARTATVTAVEKRSRTTRPPAPFNTTSLQTAAASEG-IS 346
Query: 322 SEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
TM++AE LY G ISYPR + + +L G V+ P + + LLD AG
Sbjct: 347 PARTMRLAESLYMDGLISYPRVDNTVYPKSLDLRGCVRMLSQVPQYRAACRELLD--AGP 404
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVE 441
+ G + HPPI+PT ++ + +KLY L+ R FLA +SQ +V T V
Sbjct: 405 L-HATRGKQETTDHPPIYPTA-AADPGKLEGAAWKLYNLIARRFLATLSQASVSEGTKVA 462
Query: 442 INIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
+++GE FS SG V++ + +Y + +P G ++ LD+ T PP
Sbjct: 463 FDVSGEPFSASGTVLVKPGFRAIYPYGLRKDEQLPPLEVGDSCDVVSMALDAKQTEPPAR 522
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
S+ L+ M+K +GT +T I++L D Y D P+ +G A++
Sbjct: 523 YSQGRLIQEMEKRNLGTKSTRASIIQRLYDVKYLKNDP---VEPSQLGMAVIDALTQYAP 579
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK-KVKLLEAMGIFFE 620
+ + + +E DM +V+ G ++ +V+ + + + A +DA ++ K L +A+
Sbjct: 580 HITSAGMTAQLEDDMTKVAEGTDTQDEVVTHS-RSLLASMMDALIEHKDDLGDAIA---- 634
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP-GSVSEA 679
D A V C C + ++ +++ + VGC+ +P C +P G +S
Sbjct: 635 ------DAVTADAKVGVCPKCGKDLVMKTSAKNRSSFVGCMGWPDCDVTYPVPKGRISPI 688
Query: 680 AVTTNTCNSCTPGPVYLIQFKFRQHE 705
C C V + F+ R +E
Sbjct: 689 EGEGGVCPECGAPRVKVQPFRQRAYE 714
>gi|308234129|ref|ZP_07664866.1| DNA topoisomerase I [Atopobium vaginae DSM 15829]
gi|328943646|ref|ZP_08241111.1| DNA topoisomerase TopA [Atopobium vaginae DSM 15829]
gi|327491615|gb|EGF23389.1| DNA topoisomerase TopA [Atopobium vaginae DSM 15829]
Length = 862
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 202/756 (26%), Positives = 320/756 (42%), Gaps = 103/756 (13%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYE---FNYSIRGQPCHMLMTSVTGH 67
L V EK A+ +A +LSK G+ +K+Y+ + + G C + + GH
Sbjct: 3 LIVTEKNDAAQQIARLLSK-------AGKPVVDKVYDTPVYRFKYDGTDC--VTIGLRGH 53
Query: 68 LMELDF--DERYRK---WHSCD----------PADLYHAPV---RKHVPEDKKDIK---- 105
+M DF + Y+K W++ P +L P RK D DIK
Sbjct: 54 IMAPDFPHELHYKKSTGWYALTEEGEILSAQLPKELACPPFESKRKPYLSDGIDIKGWKV 113
Query: 106 ---------------------KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC 144
+ L+ A++ +++ D DREGE I + + + V
Sbjct: 114 PSLPYLIWSPIEKLPAEKGIIRALKNLAKKADSIIIATDFDREGELIGSDALHQMQQVAV 173
Query: 145 HLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML---- 200
+ + RAR+SA EI A ++LV +Q ADA ++RQ IDL GA TR+ TM
Sbjct: 174 DVPVFRARYSAFTQAEIDHAFEHLVKLDQNLADAGESRQYIDLIWGAVLTRYLTMAKFSG 233
Query: 201 LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN-CSHKSEEGTA 259
L N V S G Q PTL VVE+ E A E++W I+ + + +A
Sbjct: 234 LGN------------VRSAGRVQTPTLALVVEKERERNAFVPEDYWVISGMLSVTPDASA 281
Query: 260 TFSWMRGHLF----DYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRAS 315
+ H D A + +ATV ++ ++ + PP P +T L+ A+
Sbjct: 282 DEKFKTTHAIARFKDKEQATAAFNRVRNARSATVEEIEEKSRTTRPPAPFNTTSLQAAAA 341
Query: 316 RYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLL 375
++ TM++AE LY G ISYPR + + S NL V+ P + PY LL
Sbjct: 342 AEG-ITPARTMRLAESLYMEGLISYPRVDNTVYPSSLNLRACVKNLAHVPQYRPYCNELL 400
Query: 376 DHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVG 435
P G HPPI+PT ++ ++ +KLY L+ R FLA +S P+V
Sbjct: 401 SQEK---LTPTRGKQQTTDHPPIYPTA-AADPTKLDAAAWKLYNLIARRFLATLSAPSVA 456
Query: 436 AETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGV 495
T +++NIA E F +SG VI + +Y + +P G + +D+
Sbjct: 457 QNTKLKLNIADEPFVSSGTVITTLGFRAIYPYGLHKDEQLPAVSQGDVLSVHDMNMDAKQ 516
Query: 496 TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMG 555
T PP S+ L+ M+K G+GT +T I++L D Y D + +G A++
Sbjct: 517 TEPPARYSQGRLIQEMEKHGLGTKSTRASIIQRLYDVKYLKGDP---VEASQLGCAVIDA 573
Query: 556 YDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAM 615
+ N+ S +E DM V+ G ++ V+ + + L M
Sbjct: 574 LTQYAPHITSSNMTSELEEDMTSVAEGASTQEHVVDH--------------SRALLASVM 619
Query: 616 GIFFERWSG-GEDQQAAGEVVRQCGICQE--SNMVLKKS-RDGNLMVGCLAFPQCRNAVW 671
G + GE A + G+C E ++V+K S + + VGC+ +P C
Sbjct: 620 GTLIDHVQDLGEAISDAVTADAKVGVCPECGKDLVMKSSAKTRSNFVGCVGWPDCNVTYP 679
Query: 672 LP-GSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEI 706
+P G + + C +C V + F+ R EI
Sbjct: 680 VPTGRIEALEGEKSRCETCKAPRVKVHPFRQRAFEI 715
>gi|330506959|ref|YP_004383387.1| DNA topoisomerase I [Methanosaeta concilii GP6]
gi|328927767|gb|AEB67569.1| DNA topoisomerase I [Methanosaeta concilii GP6]
Length = 766
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 177/680 (26%), Positives = 304/680 (44%), Gaps = 56/680 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK AK +A ILS N+ R G + F + + ++ ++GH++
Sbjct: 3 LIIAEKHDAAKRIAQILSGNKPRPYRIG-----GVEAFKFDDK------VVMGLSGHIVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+D+ Y W D +L A + DK I L + + + D DREGE
Sbjct: 52 VDYPPGYNNWQKVDCKELIRAEIVVRPINDK--IVNALRSLGKEADRITVATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E +++ + N L R R+SA++ EI +A +N + A + +ARQ IDL G
Sbjct: 110 IGVEALKIAKEANPRLREDRVRYSAIVKDEILKAFKNAGKVDYDLAASGEARQIIDLVWG 169
Query: 191 ASFTRFQTM----LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
A+ TR+ ++ L K F LS G Q PTL +V+R EIQ+ + +W
Sbjct: 170 AALTRYISLTSGRLGKEF------------LSVGRVQSPTLALIVDREKEIQSFVPKPYW 217
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I + E RG +++ I + P + ++ + +++ PP P
Sbjct: 218 EI---YADLERDLRVQHARGRIWEKDEVDSI--VARLGPVGIIRSIQTKPRVEKPPAPFD 272
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T AS S+ + M++AE LY GFISYPRT+ + +L + + + +
Sbjct: 273 TTSFISAASG-IGFSAANAMRIAEWLYVNGFISYPRTDNTVYPPSIDLVALTRLFL-KGE 330
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ A++LL G P G HPPI+PT +S ++ +K+YELVVR F
Sbjct: 331 FSKEAEKLL----GGKMVPTRGKRSTTDHPPIYPTA-PVNKSELKEEQWKIYELVVRRFF 385
Query: 427 ACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIP 486
A +++ V T ++++I E F SG ++ + Y + ++P G++
Sbjct: 386 ATLAESCVWDATSLKVDIGPEPFRASGARLVEPGWRYYYPYSKAEERILPALKEGERLRV 445
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
++++ T+PP + L+ MD+ G+GT +T HD I KL R Y PT
Sbjct: 446 LGHSVEAKETQPPARYGQGKLIKLMDELGLGTKSTRHDIISKLYARAYV---QGNPMRPT 502
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
N A+V + KP + +E DM ++S + +V+ + + F +
Sbjct: 503 NTAYAVVDTLQKYAPTITKPEMTQTLEKDMTQISEQKIKEDEVIEESRVMLTSVFDELSC 562
Query: 607 KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
+ + +++ +D ++V C C S +++++ G+ +GC +P+C
Sbjct: 563 NQEDIGQSL----------KDGLRTDKIVGTCEKCN-SELIIRRGHRGSRFIGCSGYPEC 611
Query: 667 RNAVWLPGSVSEAAVTTNTC 686
R + LP S VT C
Sbjct: 612 RFTLPLPRS-GAVVVTDKVC 630
>gi|240103365|ref|YP_002959674.1| DNA topoisomerase I (topA) [Thermococcus gammatolerans EJ3]
gi|239910919|gb|ACS33810.1| DNA topoisomerase I (topA) [Thermococcus gammatolerans EJ3]
Length = 712
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 203/728 (27%), Positives = 328/728 (45%), Gaps = 62/728 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKP+VA+ +A L++ + +R G+ Y YEF + +++ GHL
Sbjct: 4 LIIAEKPNVARKIAYALAEGKPVRKTIGKVSY---YEFTRDGK----KVIVAPAVGHLFS 56
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPED----KKDIKKTLEEEARRCQWLVLWLDCDR 126
L K + D+ PV +V E KD K L A+R ++ D D
Sbjct: 57 LAPKT---KTYGYPVFDIEWVPV--YVAEKGKNYAKDYIKALATLAKRADEFIVACDYDT 111
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQE 184
EGE I + ++ V+ +R +FSAL +++ +A NL +P N ADA AR
Sbjct: 112 EGEVIGYTALKYACGVDPSKA-KRMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHV 169
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + +R T +K + +VLS G Q PTL F+VER EIQ + +
Sbjct: 170 LDWYWGVNLSRALTSAIKR------ASGKWMVLSTGRVQGPTLKFLVEREKEIQNFKPKP 223
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I + T ++ + ++D A I + P A V KV +++ + PP P
Sbjct: 224 YWVIKMILEKNNSQYTATYEKDKIWDEEEAKRIVSEAKKGP-AFVEKVEVKQQKRNPPVP 282
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L++ A F S + T+++A+ LY+ G SYPRT + N I+Q
Sbjct: 283 FDLGTLQREAYSAFGYSPKKTLELAQRLYERGLSSYPRTSSQKLPKNLNFRSILQNIAKL 342
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P++ P+A LL G ++ P G +D AHP I+PT ++D LY+L+VR
Sbjct: 343 PEYKPFAHELL--GKGTFK-PVEGKKEDPAHPAIYPTGELPKPGELTKDEQNLYDLIVRR 399
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHGQQ 483
FLA +PAV V IN G F SG L + +L VY ++ + +++P + G+
Sbjct: 400 FLALFMEPAVRESMRVIINSNGHRFILSGARTLKEGWLKVYGKYVKFDEVILPQFKEGEP 459
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + T+PP S A ++ M+ GIGT AT ++ L R Y + +
Sbjct: 460 VKVIQIKREKKKTKPPARYSPAAVIKKMEDLGIGTKATRAQILETLYQRGYI--EGKKKI 517
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
T +G +V + ++ L E M+E+ G + +V+ +Q+
Sbjct: 518 KVTPLGMRVVEALEKNVPDIVSVELTRAFEEKMEEIMAGKAKRDEVIEESKEQLIKILKV 577
Query: 604 ARLKKVK----LLEAMG---IFFER------------WSGGEDQQAAGE-----VVRQCG 639
+ K++ LLE + E+ S GE+ +++ V+ +C
Sbjct: 578 FKEKELDIGKMLLETTSKDSVKVEKSSEISGTSSRSGASKGENAKSSESSRKRLVLGKCP 637
Query: 640 ICQESNMVLKKSRD-GNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
C ++VLK +R G VGC +P+C N + E T TC C PV I+
Sbjct: 638 KCG-GDLVLKYNRKTGKRFVGCSNWPKC-NVTYPILQRGEVIPTGKTC--CNGAPVVKIR 693
Query: 699 FKFRQHEI 706
K R++EI
Sbjct: 694 EKGREYEI 701
>gi|116753908|ref|YP_843026.1| DNA topoisomerase I [Methanosaeta thermophila PT]
gi|116665359|gb|ABK14386.1| DNA topoisomerase I [Methanosaeta thermophila PT]
Length = 744
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 185/674 (27%), Positives = 305/674 (45%), Gaps = 69/674 (10%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK AK ++ IL+ + ++ + I F + R ++ ++GH++
Sbjct: 3 LIIAEKHDAAKRISEILAGK-----KPTVTKVSGIDTFRFDDR------VVIGLSGHIVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LD+ E Y WH D DL A + +++ I L + R + + D DREGE
Sbjct: 52 LDYPECYNNWHKVDYRDLIRAEIVSRPTQER--IVSALRKLGREADRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + + + VN + R RFSA+ EI +A + + A + +ARQ IDL G
Sbjct: 110 IGVEALCILQEVNPSIKADRVRFSAITKSEILRAFAQPEEVDFNLAASGEARQIIDLVWG 169
Query: 191 ASFTRFQTM----LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
A+ TRF ++ L K F LS G Q PTL +V+R EI++ + + +W
Sbjct: 170 AALTRFISITSGRLGKEF------------LSVGRVQSPTLALIVDREKEIESFQPKPYW 217
Query: 247 TINCSHKSEEG-----TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
I E+G + + W R + +++ A V + + E+ P
Sbjct: 218 EIYADL--EKGIRVRHSKSRIWTRDEVDRILNSL--------SDVARVRSISKGERRDRP 267
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P T AS ++ + M++AE LY G+ISYPRT+ + +L +++
Sbjct: 268 PTPFDTTSFISAAS-SIGFTAANAMRIAESLYTNGYISYPRTDNTVYPPSIDLRSLLEML 326
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
GP+ + L+ G P G HPPI+PT + + +D +K+YELV
Sbjct: 327 SS----GPFREDALELMKGSI-TPTKGKRSTTDHPPIYPTSVADKDD-LKEDQWKIYELV 380
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A +S V T + +I EVF +G IL + Y + V+P G
Sbjct: 381 VRRFFATLSGECVWETTSISFDIGDEVFRANGSRILDLGWRRYYPYSRAEENVLPPLREG 440
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ + + S T+PP + L+ MD+ G+GT +T HD I KL R Y
Sbjct: 441 EGLKVLSHEVLSKETQPPARFGQGRLVKLMDELGLGTKSTRHDIISKLYARAYI---HGN 497
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT A+V + KP + +E+DM +++ +K +V+ Q ++A F
Sbjct: 498 PIRPTKTAYAVVDTLQRHAPAITKPEMTRTLENDMLKIAERKITKGEVIEESRQMLEAVF 557
Query: 602 --LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
L A K+++ G+ +R +V +C +C S++++++ R G VG
Sbjct: 558 DELLAHRKEIEDSLREGLRVDR------------IVGKCRLCG-SDLIIRRGRRGARFVG 604
Query: 660 CLAFPQCRNAVWLP 673
C +P+CR + LP
Sbjct: 605 CSGYPECRFTLPLP 618
>gi|73669895|ref|YP_305910.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
gi|72397057|gb|AAZ71330.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
Length = 771
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 165/644 (25%), Positives = 289/644 (44%), Gaps = 36/644 (5%)
Query: 45 IYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDI 104
+Y + + ++ ++GH++ +DF + Y W + L +A + P ++K I
Sbjct: 34 VYRYEIVSDEEKQETVVVGLSGHIVGIDFPKEYNNWQKVESKTLINADI-ITTPINRK-I 91
Query: 105 KKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQA 164
L+ ++ + + D DREGE I E + + + VN + R R+SA+ + I A
Sbjct: 92 VTALKGLGKKASRVTIATDYDREGELIGVEALNIIKQVNPDVPFDRVRYSAITPKAIEAA 151
Query: 165 VQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQF 224
N D + ADA +RQ IDL GA+ TR+ ++ + LS G Q
Sbjct: 152 FSNATDVDFNLADAGHSRQVIDLVWGAALTRYISLAAGRLG--------KMFLSVGRVQS 203
Query: 225 PTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRG--HLFDYTSAVIIYEMCV 282
PTL +V+R E +W I ++ EG TFS D A ++
Sbjct: 204 PTLSLIVDREKERNVFVPTPYWEIYAELQNTEG-KTFSAQHSTRRFLDKKEATKAFKKLG 262
Query: 283 QEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
++ A + + + +K PP P +T A+ +S + M++AE LY G+ISYPR
Sbjct: 263 KK--AELKGIEKGKKTDQPPAPFNTTGF-ISAANSIGLSPANAMRIAEALYTNGYISYPR 319
Query: 343 TETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK 402
T+ + +L + E + YA LL+ A + P G + HPPI P
Sbjct: 320 TDNTVYPETLDLRAQI-EIFKEGPFKEYADALLEKAELI---PTRGKKETTDHPPIFPAS 375
Query: 403 FSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462
+ ES +D +K+YELVVR F A + P+ ++++I GE F +G ++ + +
Sbjct: 376 LAK-ESDLKEDEWKVYELVVRRFFATFAGPSEWETMRLKLDINGEEFKANGARLVEQGWR 434
Query: 463 DVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
Y + + + P G + T+PP + L++ M++ G+GT AT
Sbjct: 435 WYYPYNAPEDRLFPELHEGDSLKVIKKDMQDKETQPPGRYGQGRLINIMEELGLGTKATR 494
Query: 523 HDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
H+ I KL R Y PTN A++ + + KP++ ++E +M ++ G
Sbjct: 495 HEIISKLYSRAYI---HGNPVQPTNTSFAVMDTLEKYSPTITKPDMTKLLEENMDRIAEG 551
Query: 583 NKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+A VL +K F + + K++E++ ED+ ++ C C
Sbjct: 552 KIKEAAVLEESRDMLKQVFSELDKNREKIVESLQAGLR-----EDK-----IIGTCSSCG 601
Query: 643 ESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
+ +++++S+ G +GC +P C ++ LP S + VT C
Sbjct: 602 -NELIIRRSKRGGRFIGCNNYPNCTFSLPLPRS-GQIIVTDKVC 643
>gi|346310924|ref|ZP_08852936.1| hypothetical protein HMPREF9452_00805 [Collinsella tanakaei YIT
12063]
gi|345897172|gb|EGX67103.1| hypothetical protein HMPREF9452_00805 [Collinsella tanakaei YIT
12063]
Length = 862
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 191/687 (27%), Positives = 303/687 (44%), Gaps = 62/687 (9%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L AP+ K+ E K+I + L+ A++ +V+ D DREGE I + + R V +
Sbjct: 118 LTWAPIIKNPAE--KEIIRVLKNLAKKADSVVIATDFDREGELIGSDALSCVREVAPDVP 175
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML-LKNFHI 206
+ RAR+SALI E+ +A NLV+ +Q ADA ++RQ IDL GA TR+ T+ F
Sbjct: 176 VSRARYSALIKGEVTEAFNNLVELDQNLADAGESRQYIDLIWGAVLTRYLTLAKFGGF-- 233
Query: 207 DSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRG 266
V S G Q PTL VVER E A E++W I ++ +
Sbjct: 234 -------GNVRSAGRVQTPTLALVVERERERMAFVPEDYWQIRGMAAAKGADFKINHATA 286
Query: 267 HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTM 326
D +A + TVT V ++ + + PP P +T L+ A+ +S TM
Sbjct: 287 RFTDKDAAQTAFGHVDGVVAGTVTDVAKRSRKQQPPVPFNTTSLQAAAAAEG-ISPARTM 345
Query: 327 KVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH-PDWGPYAQRLLDHAAGLWRNP 385
++AE LY +G ISYPR + + +L GIV+ + P P +++L AG + P
Sbjct: 346 RIAESLYMSGLISYPRVDNTVYPRSLDLEGIVKGLAANSPALAPVCKKVL---AGPMK-P 401
Query: 386 GSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
G + HPPIHPT + KLY L+ R FLA + PA T V I++A
Sbjct: 402 TRGKTETTDHPPIHPTG-QGDPTTLDSGQLKLYNLIARRFLATLMGPATIENTKVSIDVA 460
Query: 446 GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEA 505
GE F+ SG V++ + + Y + +P G + L++ T PP S+
Sbjct: 461 GEPFTASGDVLVDAGFREAYPYGLKRDEQLPALDAGDVVDVHDVNLEAKQTEPPARYSQG 520
Query: 506 DLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWK 565
L+ M+K G+GT +T I++L Y D P+ +G A+V +
Sbjct: 521 KLVQEMEKRGLGTKSTRASIIERLYQVRYLKNDP---IEPSQLGMAIVDALSQFAPRITT 577
Query: 566 PNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK-KVKLLEAMGIFFERWSG 624
P + + ++ DM V+ G ++ V+ + + + A LD ++ K L EA+
Sbjct: 578 PEMTAELDEDMTHVAEGQDTQTHVVDHS-RALLAGMLDNLIEHKDDLGEAI--------- 627
Query: 625 GEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTN 684
D A V C C + ++ + ++ +GC+ +P C +P V + + +
Sbjct: 628 -SDAVTADARVGACPKCGKDLVMKQSAKTRGSFIGCMGWPDCDVTYPVPSGVKVSPLEGD 686
Query: 685 --TCNSCTPGPVYLIQFKFRQHE--IPPGFNVNH-----LGCIGGCDETLRQ--LI---- 729
C C + F+ + +E + P N+ +G C E R LI
Sbjct: 687 AAVCPECGAPRIKCQPFRQKAYEQCVNPKCPTNYEPDLKVGECSVCAEAGRHGDLIAHKS 746
Query: 730 -------------EICGTGSRIPARGR 743
E CG +PARG+
Sbjct: 747 EKSGKRFIRCSNYEECGVSYPLPARGK 773
>gi|452211571|ref|YP_007491685.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
gi|452101473|gb|AGF98413.1| DNA topoisomerase I [Methanosarcina mazei Tuc01]
Length = 752
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 164/632 (25%), Positives = 289/632 (45%), Gaps = 40/632 (6%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIK--KTLEEEARRCQWL 118
+ ++GH++ +DF + Y W D DL A + P ++K + K+L +EA R +
Sbjct: 50 VVGLSGHIVGIDFPKEYNNWQKVDARDLIDAEI-TTTPINRKIVTALKSLGKEADR---V 105
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA 178
+ D DREGE I E + + + VN + R R+SA+ + I A N + + ADA
Sbjct: 106 TIATDYDREGELIGVEALNIIKQVNPKIPFDRVRYSAITPKAIEAAFSNPTNVDFNLADA 165
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
+RQ IDL GA+ TR+ ++ + LS G Q PTL +V+R E
Sbjct: 166 GHSRQVIDLVWGAALTRYISLAAGRLG--------KMFLSVGRVQSPTLSLIVDREKERN 217
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRG--HLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
+W I+ + G TFS D A ++ ++ A + ++ +
Sbjct: 218 IFVPTPYWEIHVELEDAAG-ETFSAQHSTRRFLDKEEASKVFRKLGKK--AELKEIEKGT 274
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K PP P +T A+ +S + M++AE LY G+ISYPRT+ + +L
Sbjct: 275 KTDQPPTPFNTTGF-ISAANSIGLSPSNAMRIAESLYTNGYISYPRTDNTVYPDTLDLRA 333
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
+ E + YA LL+ + P G + HPPI P + ES +D +K
Sbjct: 334 QI-EIFKEGPFKEYANTLLEKPELV---PTRGKKETTDHPPIFPASLAK-ESDLKEDEWK 388
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
+YELVVR F A + P++ ++++I GE F +G +L + Y + + ++P
Sbjct: 389 VYELVVRRFFATFAGPSIWETMRLKLDIEGEEFRANGARLLEPGWRWYYPYNAPEDRLLP 448
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
G + T+PP + L++ M++ G+GT AT H+ I KL R Y
Sbjct: 449 ELKEGDLLKVIKKEMLDKETQPPGRYGQGRLINIMEELGLGTKATRHEIISKLYSRAYI- 507
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
PTN +++ + + KP++ ++E +M +++ G + VL +
Sbjct: 508 --HGNPVQPTNTSFSVMDTLEKYSPTITKPDMTKLLEENMDKIAEGKIKEEAVLEESREM 565
Query: 597 MKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNL 656
+K F + + ++E++ ED+ ++ C +C + +++++S+ G+
Sbjct: 566 LKQVFSELDKNRDNIIESLQAGLR-----EDK-----IIGDCSLCG-NELMIRRSKRGSR 614
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
+GC +P C ++ LP S + VT C +
Sbjct: 615 FIGCSNYPNCTFSLPLPKS-GQIIVTDKLCEA 645
>gi|414886208|tpg|DAA62222.1| TPA: hypothetical protein ZEAMMB73_837809 [Zea mays]
Length = 374
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 202/379 (53%), Gaps = 9/379 (2%)
Query: 165 VQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQF 224
+ NLV PN+ + +VDARQEIDL++G +FTRFQT + + + D R V+SYGPCQ
Sbjct: 1 MDNLVLPNKDESLSVDARQEIDLKVGVAFTRFQTRYFQGKYGN--LDSR--VISYGPCQT 56
Query: 225 PTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE 284
PTLGF V+R+ +I + E+FW++ + W R LFD+ V+ +M + +
Sbjct: 57 PTLGFCVQRHQQITTFKPEKFWSLKTYIIKDSDEIQLEWDRKKLFDFDVTVMFQKMVISD 116
Query: 285 PTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTE 344
T V + +E+ K P L+T+ + K AS + + M +AE LY GFISYPRTE
Sbjct: 117 GTLKVADISVKEECKTRPSGLNTVNMLKVASSALGIGPQTAMHLAERLYTQGFISYPRTE 176
Query: 345 TDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFS 404
+ ++ S + G + + +P W ++LLD AG + GHD HPPI P + S
Sbjct: 177 STAYPSSFDFRGALAALLNNPLWSNDVRKLLD--AGFVK--PRQGHDAGDHPPITPMR-S 231
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV 464
+ E+ D ++LY+ + +HF+ VS T +E GE F G + +K + +
Sbjct: 232 ATEASLGTDAWRLYQYICQHFIGTVSPDCRYTRTAIEFTSGGETFHCVGYRVTSKGFTSI 291
Query: 465 YRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHD 524
+ + +P + G + G T PP L+E++L+S M+K GIGTDA++
Sbjct: 292 MPWLAVSENSLPAFKKGDSVSIHKADIYEGSTTPPDYLTESELISLMEKNGIGTDASIPV 351
Query: 525 HIKKLLDRFYAIKDANTRF 543
HI + +R Y ++ R+
Sbjct: 352 HINNICERNYVQVNSGRRY 370
>gi|14590513|ref|NP_142581.1| DNA topoisomerase I [Pyrococcus horikoshii OT3]
gi|14423960|sp|O58356.1|TOP1_PYRHO RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|3257028|dbj|BAA29711.1| 686aa long hypothetical DNA topoisomerase I [Pyrococcus horikoshii
OT3]
Length = 686
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 188/698 (26%), Positives = 319/698 (45%), Gaps = 45/698 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKP+VA+ +AG LS+ + ++ +S + Y Y I + +++ S GHL
Sbjct: 2 ILIIAEKPNVARKIAGALSERRPIK----KSLFGVPY---YEIFREGKKLIVASAVGHLY 54
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIK----KTLEEEARRCQWLVLWLDCD 125
L R D+ PV ++ E K+ K L A+R + ++ D D
Sbjct: 55 GLAPK---RDVFGYPIFDIEWVPV--YIAEKGKEYAREYIKALSVLAKRVREFIVACDYD 109
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQ 183
EGE I + ++ V+ V +R +FSAL R++ A +NL +P N A+A AR
Sbjct: 110 TEGEVIGYTALKYACGVDPR-VAKRMKFSALTKRDLLNAWRNL-EPTINFGMANAGIARH 167
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+D G + +R T +K + +VLS G Q PTL F+VER EIQ+
Sbjct: 168 ILDWYWGVNLSRALTHAIKK------ASGKWVVLSTGRVQGPTLKFLVEREREIQSFVPR 221
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAV-IIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W I + T ++ + +++ I+ E+ P + ++++Q++ PP
Sbjct: 222 PYWVIKLIFEKNGQKFTANYEKDKIWEEEEGKRIVLEVKKSIPRVSNVEIKRQKRT--PP 279
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
+P L++ A F S + T+ +A+ LY+ GF SYPRTE+ N I+Q
Sbjct: 280 HPFDLGTLQREAYSAFGFSPKKTLDIAQSLYEKGFSSYPRTESQKLPRNINFRMIIQNLA 339
Query: 363 GHPDWGPYAQRLLDHAAGLWR-NPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
P + PYA LL GL P G +D AHP I+PT ++D KLY+++
Sbjct: 340 KMPQYRPYAHILL----GLPELKPVEGKKEDPAHPAIYPTGEIPRPGDLTKDEEKLYDMI 395
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVH 480
VR FLA +PA+ V I F SG + K +L VY ++ + + +P +
Sbjct: 396 VRRFLAVFMEPAIRESVKVTIRAGPHKFFLSGGRTVKKGWLSVYGKYVKFEEVTLPEFFI 455
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G++ + + T+PP S A ++ M+ G+GT AT ++ L R Y +
Sbjct: 456 GERIKVIQVKREKKKTKPPARYSPAAVIKKMEDLGLGTKATRAQILETLYQRGYIEGKKS 515
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
+ P +G ++ + E+ L E M+ + G +K +V+ +++
Sbjct: 516 IKVTP--LGMKVIETLEKYVPEIISVELTREFEKKMELIMEGRLTKEEVIEEAKERLTKI 573
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
+ + +++++ GI + GED + VV +C C +V + G VGC
Sbjct: 574 LEEFKKRELEI----GIELAKIVVGED-EVKPLVVGKCPKCGGDLIVKYNKKTGKRFVGC 628
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
+P+C + + E T TC C PV +I+
Sbjct: 629 SNWPKC-DVTYPILQRGEIIPTNKTC--CNGAPVVIIR 663
>gi|212223461|ref|YP_002306697.1| topA [Thermococcus onnurineus NA1]
gi|212008418|gb|ACJ15800.1| topA [Thermococcus onnurineus NA1]
Length = 717
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 206/733 (28%), Positives = 314/733 (42%), Gaps = 70/733 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKP+VA+ +A L++ + +R G+ Y YEF + +++ GHL
Sbjct: 4 LIIAEKPNVARKIAYALAEGRPVRKTIGKVPY---YEFTRDGK----RIIVAPAVGHLFS 56
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPED----KKDIKKTLEEEARRCQWLVLWLDCDR 126
L K + D+ PV +V E KD K L A+R V+ D D
Sbjct: 57 LAPKT---KTYGYPVFDIEWVPV--YVAEKGKSYAKDYIKALATLAKRADEFVVACDYDT 111
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP-NQWFADAVDARQEI 185
EGE I + ++ V+ +R +FSAL +++ +A NL N ADA AR +
Sbjct: 112 EGEVIGYTALKYACGVDPSKA-KRMKFSALTKKDLLKAWYNLESTINFGMADAGIARHVL 170
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
D G + +R T +K + +VLS G Q PTL F+V+R EIQ + +
Sbjct: 171 DWYWGVNLSRALTSAIKR------ASGKWMVLSTGRVQGPTLKFLVDREKEIQNFKPTPY 224
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I + T + + + D A I E + P A V KV +++ ++PP P
Sbjct: 225 WVIKMVLEKNGQQYTAVYEKERILDENEAKRIVEEAKKGP-AFVEKVDVKQQNRHPPVPF 283
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
L++ A F S + T+++A+ LY+ G SYPRT + N I+Q P
Sbjct: 284 DLGTLQREAYSAFGYSPKKTLELAQKLYERGLTSYPRTSSQKLPKNLNFRSILQNLAKLP 343
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
++ P+A LL P G DD AHP I+PT ++D LY+L+VR F
Sbjct: 344 EYKPFAHELLGKER---LKPVEGKKDDPAHPAIYPTGELPKPGELTKDEANLYDLIVRRF 400
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHGQQF 484
LA +PAV V IN G F SG + + +L VY ++ + ++P + G+
Sbjct: 401 LALFMEPAVREIMKVIINSNGHRFILSGARTIKEGWLKVYGKYVKFDEAILPAFKEGEPV 460
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ + T+PP S A ++ M+ GIGT AT ++ L R Y + +
Sbjct: 461 KVLQIKREKKKTKPPARYSPAAVIKRMEDLGIGTKATRAQILETLYSRGYI--EGKKKIK 518
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV-------LANCLQQM 597
T +G +V + ++ L E M+E+ G K V L LQQ
Sbjct: 519 VTPLGMRVVEALERNVPDIVSVELTRAFEEKMEEIMAGKADKDRVIEESKEQLIKILQQF 578
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGE------------------------ 633
K LD + KV L+E G + E+ + AG
Sbjct: 579 KEKELD--IGKV-LMETTGTGVT--TSKENAKRAGTVKELSETEEKDVKKTIEKGEKTPL 633
Query: 634 VVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGP 693
VV +C C +V + G VGC +P+C N + T TC C P
Sbjct: 634 VVGKCPKCGGDLVVRYNRKTGKRFVGCSNWPKC-NVTYPLLQRGRIIPTNKTC--CDGAP 690
Query: 694 VYLIQFKFRQHEI 706
V I+ K R++EI
Sbjct: 691 VVKIREKGREYEI 703
>gi|21229178|ref|NP_635100.1| DNA topoisomerase I [Methanosarcina mazei Go1]
gi|20907743|gb|AAM32772.1| DNA topoisomerase I [Methanosarcina mazei Go1]
Length = 752
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/632 (25%), Positives = 288/632 (45%), Gaps = 40/632 (6%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIK--KTLEEEARRCQWL 118
+ ++GH++ +DF + Y W D DL A + P ++K + K+L +EA R +
Sbjct: 50 VVGLSGHIVGIDFPKEYNNWQKVDARDLIDAEI-TTTPINRKIVTALKSLGKEADR---V 105
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA 178
+ D DREGE I E + + + VN + R R+SA+ + I A N + + ADA
Sbjct: 106 TIATDYDREGELIGVEALNIIKKVNPKIPFDRVRYSAITPKAIEAAFSNPTNVDFNLADA 165
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
+RQ IDL GA+ TR+ ++ + LS G Q PTL +V+R E
Sbjct: 166 GHSRQVIDLVWGAALTRYISLAAGRLG--------KMFLSVGRVQSPTLSLIVDREKERN 217
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRG--HLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
+W I+ + G TFS D A ++ ++ A + ++ +
Sbjct: 218 IFVPTPYWEIHVELEDAAG-ETFSAQHSTRRFLDKEEASKVFRKLGKK--AELKEIEKGT 274
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K PP P +T A+ +S + M++AE LY G+ISYPRT+ + +L
Sbjct: 275 KTDQPPTPFNTTGF-ISAANSIGLSPANAMRIAESLYTNGYISYPRTDNTVYPDTLDLKA 333
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
+ E + YA LL+ + P G + HPPI P + ES +D +K
Sbjct: 334 QI-EIFKEGPFKEYANTLLEKPELV---PTRGKKETTDHPPIFPASLAK-ESDLKEDEWK 388
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
+YELVVR F A + P++ ++++I GE F +G +L + Y + + ++P
Sbjct: 389 VYELVVRRFFATFAGPSIWETMRLKLDIEGEEFRANGARLLEPGWRWYYPYNAPEDRLLP 448
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
+ T+PP + L++ M++ G+GT AT H+ I KL R Y
Sbjct: 449 ELKESDLLKVIKKEMLDKETQPPGRYGQGRLINIMEELGLGTKATRHEIISKLYSRAYI- 507
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
PTN A++ + + KP++ ++E +M +++ G + VL +
Sbjct: 508 --HGNPVQPTNTSFAVMDTLEKYSPTITKPDMTKLLEENMDKIAEGKIKEEAVLEESREM 565
Query: 597 MKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNL 656
+K F + + ++E++ ED+ ++ C +C + +++++S+ G+
Sbjct: 566 LKQVFSELDKNRDNIIESLQAGLR-----EDK-----IIGDCSLCG-NELMIRRSKRGSR 614
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
+GC +P C ++ LP S + VT C +
Sbjct: 615 FIGCSNYPNCTFSLPLPKS-GQIIVTDKLCEA 645
>gi|14521628|ref|NP_127104.1| DNA topoisomerase I [Pyrococcus abyssi GE5]
gi|14423980|sp|Q9UYS8.1|TOP1_PYRAB RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|5458847|emb|CAB50334.1| topA DNA topoisomerase I [Pyrococcus abyssi GE5]
gi|380742240|tpe|CCE70874.1| TPA: DNA topoisomerase I [Pyrococcus abyssi GE5]
Length = 685
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 196/716 (27%), Positives = 320/716 (44%), Gaps = 60/716 (8%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKP+VA+ +AG LS+ + +R ++ + Y Y + +++ S GHL
Sbjct: 2 ILVIAEKPNVARKIAGALSERRPIR----KTIFGVPY---YEVFRDGKKLIVASAVGHLY 54
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK----TLEEEARRCQWLVLWLDCD 125
L + + + D + PV ++ E KD K L A+R + ++ D D
Sbjct: 55 GLAPKQDFFGYPIFD---IEWVPV--YIAEKNKDYAKDYIKALSVLAKRVKEFIVACDYD 109
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQ 183
EGE I + ++ V+ +R +FSAL R++ A +NL +P N A+A AR
Sbjct: 110 TEGEVIGYTALKYACGVDPSRA-KRMKFSALTKRDLLNAWRNL-EPTINFGMANAGIARH 167
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+D G + +R T +K + +VLS G Q PTL F+VER EIQ+ +
Sbjct: 168 VLDWYWGVNLSRALTHAIKR------ASGKWVVLSTGRVQGPTLKFLVEREREIQSFVPK 221
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAV-IIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W I + ++ + ++ A I+ E V++ A V+ + + + + PP
Sbjct: 222 PYWVIKLVIEKNGQKLVANYEKDKIWSEEEAKKIVTE--VKKSKARVSNIEVKRQKRNPP 279
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P L++ A F S + T+ +A+ LY+ GF SYPRTE+ N I+Q
Sbjct: 280 VPFDLGTLQREAYSAFGFSPKKTLDIAQSLYEKGFTSYPRTESQKLPKNLNFRLIIQNIS 339
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
P + PYA LL P G +D AHP I+PT G S+D KLY+++V
Sbjct: 340 RMPQYRPYAHLLLGMPE---LKPVEGKKEDPAHPAIYPTGEIPGPGDLSKDEEKLYDMIV 396
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHG 481
R FLA +PAV V I F SG + + +L VY ++ + + +P + G
Sbjct: 397 RRFLALFMEPAVRESVKVTILAGPHKFMLSGARTVKQGWLSVYGKYIKFDEVTLPEFFIG 456
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ + + T+PP S A ++ M+ GIGT AT ++ L R Y +
Sbjct: 457 ERVRVLQVRREKKKTKPPARYSPAAVIKKMEDLGIGTKATRAQILETLYQRGYIEGKKSI 516
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+ P +G ++ + E+ L E M + G +K +V+
Sbjct: 517 KVTP--LGMKVIETLEKYVPEIISVELTREFERKMDLIMQGKLTKEEVIE---------- 564
Query: 602 LDARLKKVKLLE-------AMGIFFERWSGGEDQQAAGE----VVRQCGICQESNMVLKK 650
+A++K K+LE +G+ R G+ + E VV +C C +V
Sbjct: 565 -EAKVKLTKILEEFKKRELEIGLELARIVVGDVKDEIKEEKPIVVGKCPKCGGDLIVKYN 623
Query: 651 SRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEI 706
+ G VGC +P+C + + E T TC C PV +I+ K R EI
Sbjct: 624 KKTGKRFVGCSNWPKC-DVTYPILQRGEIIPTNKTC--CNGAPVVIIRDKGRDIEI 676
>gi|405982831|ref|ZP_11041142.1| DNA topoisomerase I [Slackia piriformis YIT 12062]
gi|404389540|gb|EJZ84616.1| DNA topoisomerase I [Slackia piriformis YIT 12062]
Length = 846
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 174/632 (27%), Positives = 287/632 (45%), Gaps = 64/632 (10%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L +AP+ K E KDI ++L+ A++ +++ D DREGE I + + + VN
Sbjct: 118 LAYAPIEKKPKE--KDIIRSLKNLAKKSDEIIIATDFDREGELIGSDALSCMKEVNDTAP 175
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHID 207
+ RAR+SA+ EI A +LV+ + A A ++RQ+IDL GA TR+ T++ + +
Sbjct: 176 VFRARYSAITKDEIQHAFSHLVELDNDLAQAGESRQDIDLIWGAVLTRYLTIVKFAGYGN 235
Query: 208 SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC--SHKSEEGTATFSWMR 265
V S G Q PTL +V R E A E++W I + E+ AT + R
Sbjct: 236 --------VRSSGRVQTPTLALIVARERERMAFVPEDYWVIKARFGKEPEDFEATHAMAR 287
Query: 266 -----------GHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRA 314
GH+ D + VI + + ++++ P P +T L A
Sbjct: 288 FKAEAQANAVMGHVEDASKGVI-------------SSIEKRKRTVAAPVPFNTTSLMAAA 334
Query: 315 SRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRL 374
+ +S TM++AE LY G+ISYPR + + +L G V++ + PY Q L
Sbjct: 335 ASE-GLSPARTMRIAESLYMDGYISYPRVDNTVYPESLDLEGTVRKLSDVAVYRPYCQEL 393
Query: 375 LDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAV 434
L A + G + HPPIHPT ++ + +KLY L+ R FLA +S+ AV
Sbjct: 394 LSKGALVATR---GKKETTDHPPIHPTA-AADPDKLGAPEWKLYNLIARRFLATLSESAV 449
Query: 435 GAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSG 494
T V I++A E F T G V++ + +Y + +P+ GQ T
Sbjct: 450 VEGTKVTIDVASEPFVTRGDVLVKPGFRAIYPYGLKKDEQLPSLEEGQSVDFQGATCTKK 509
Query: 495 VTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA-NTRFAPTNIGEALV 553
T PP S+ L+ M+K G+GT AT H +++R Y +K N P+ +G A+
Sbjct: 510 QTEPPARYSQGKLIQEMEKLGLGTKATRH----AIIERLYTVKYVQNDPIEPSQLGIAVC 565
Query: 554 MGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL---KKVK 610
++ P++ + +E DM +++ G KS+ DV+ + + + LD L ++VK
Sbjct: 566 DALGKFAPQITSPDMTATLEEDMNKIAAGEKSRKDVV-DLSRDILHDVLDELLPHQEEVK 624
Query: 611 LLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAV 670
A + + + G C C + + S+ ++ +GC +P C
Sbjct: 625 DALADAVAADAYVG------------PCPKCGKDLQLRASSKTRSMFIGCAGWPDCDVTY 672
Query: 671 WLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFR 702
LP EA C +C + + F+ +
Sbjct: 673 PLPKGKVEA--LEEKCPTCGMPQIKVTAFRSK 702
>gi|11499394|ref|NP_070633.1| DNA topoisomerase I [Archaeoglobus fulgidus DSM 4304]
gi|14423959|sp|O28469.1|TOP1_ARCFU RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|2648740|gb|AAB89443.1| DNA topoisomerase I (topA) [Archaeoglobus fulgidus DSM 4304]
Length = 663
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 191/702 (27%), Positives = 321/702 (45%), Gaps = 79/702 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A IL K+ +++GR Y Y +++ + GH++E
Sbjct: 6 LIITEKDNTARRIASILFKDVKT-LKKGRVSY-------YHSPSNDAYVV--GLKGHIVE 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF + W L A + K V E + I L+E A++ + + D DREGE
Sbjct: 56 LDFPKELNNWTKTPLEKLLQAELVKKVKE--RTISSILKEIAKKADRVTVATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E +E+ ++VN + + R R+SA+ ++EI A V + A+A ARQ+IDL G
Sbjct: 114 IGVEALEIVKSVNPTVKVDRVRYSAVTEKEIRSAFSKPVKVDFNLANAALARQKIDLIWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TR L + H + D LS G Q PTL +V+R EIQ + E+++ I
Sbjct: 174 ATLTR-----LISVHSGRMGKD---FLSVGRVQTPTLRLIVDRELEIQNFKPEKYYEIFA 225
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ-EPTATVTKVRQQEKLKYPPYPLSTIE 309
EG ++ H Y S ++ + TA V + ++ + P P +T E
Sbjct: 226 EF---EG-----FIAKHPKRYGSKEEAEKLFAKIGETAKVEEFTRRRMEENRPTPFNTTE 277
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
+ AS++ MS M +AE LY G+ISYPRT+ + NL IV P
Sbjct: 278 FLREASKF--MSPHKAMNIAETLYMNGYISYPRTDNTVYPPTINLIEIVS---ALSSVFP 332
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GESRWSQDHYKLYELVVRHFLAC 428
+++ + P G + K HPPI+PT + GE S+D + +YELVVR FLA
Sbjct: 333 REAQIVLSQDKI--TPSRGRRETKDHPPIYPTGVAKRGE--LSKDEWTIYELVVRRFLAT 388
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
++ AV V ++ G F +GR ++ + D+Y + +P G
Sbjct: 389 LAPKAVWDVRRVVLDSNGVKFVANGRQLVEAGWRDIYIYSKAEETELPLLKKGDVLRILK 448
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
L+ T+PP S + L+ M+K +GT +T H+ I+KL+ R Y F P+
Sbjct: 449 KRLEEKETKPPGRYSASSLIKMMEKLNLGTKSTRHEIIQKLVSRRYI---HGNPFRPSET 505
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN----CLQQMKACFLDA 604
+++ + + P++ + +E++M ++ G K + +V+ LQ ++A +D
Sbjct: 506 AFSVINVLKETAETITLPDMTAKLENEMDLIAEGKKREPEVVDESREMLLQILRA--IDY 563
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
R L E + ++V +C C +V+++S+ G +GC +P
Sbjct: 564 RKLSKDLREGV--------------KKDKIVGKCPECG-GELVVRQSKAGKRFIGCSNYP 608
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEI 706
C + LP + G +Y+ + ++HEI
Sbjct: 609 DCTFTLPLPQN----------------GTLYITAKQCKEHEI 634
>gi|390960560|ref|YP_006424394.1| DNA topoisomerase, type IA [Thermococcus sp. CL1]
gi|390518868|gb|AFL94600.1| DNA topoisomerase, type IA [Thermococcus sp. CL1]
Length = 716
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 197/728 (27%), Positives = 318/728 (43%), Gaps = 61/728 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKP+VA+ +A L++ + +R G+ Y YEF + +++ GHL
Sbjct: 4 LIIAEKPNVARKIAYALAEGKPVRKTIGKVSY---YEFTRDGK----RIIVAPAVGHLFS 56
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPED----KKDIKKTLEEEARRCQWLVLWLDCDR 126
L K + D+ PV +V E KD K L A+R V+ D D
Sbjct: 57 LAPKT---KTYGYPVFDIEWVPV--YVAEKGKGYAKDYIKALATLAKRADEFVVACDYDT 111
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQE 184
EGE I + ++ V+ +R +FSAL +++ +A NL +P N ADA AR
Sbjct: 112 EGEVIGYTALKYACGVDPTRA-KRMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHV 169
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + +R T +K + VLS G Q PTL F+VER EI + +
Sbjct: 170 LDWYWGVNLSRALTSAIKR------ASGKWQVLSTGRVQGPTLKFLVEREREIANFQPKP 223
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I + + + T ++ R ++D A I + + P A V +V +++ + PP P
Sbjct: 224 YWVIKMTLEKNSKSYTATYERDKIWDEEEAKRIVQEAKKGP-AFVERVEVKQQKRNPPVP 282
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L++ A F S + T+++A+ LY+ SYPRT + N I+Q
Sbjct: 283 FDLGTLQREAYSAFGYSPKKTLEIAQKLYERALCSYPRTSSQKLPKNLNFRSILQNLAKL 342
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P++ P+A LL P G +D AHP I+PT ++D LY+L+VR
Sbjct: 343 PEYKPFAHELLGKDK---LRPVEGKKEDPAHPAIYPTGELPKAGELTRDEANLYDLIVRR 399
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHGQQ 483
FLA +PAV V IN F SG + + +L VY ++ + +++P + G+Q
Sbjct: 400 FLALFMEPAVREIARVIINSNNHRFILSGARTVKEGWLKVYGKYVKFDEVILPAFKEGEQ 459
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + T+PP S A ++ M+ GIGT AT ++ L R Y + +
Sbjct: 460 VRVLQIKREKKKTKPPARYSPAAVIKKMEDLGIGTKATRAQILETLYSRGYI--EGKKKI 517
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANC---LQQMKAC 600
T +G +V + ++ L E M+E+ G K +V+ L ++
Sbjct: 518 KVTPLGMRVVEALEKNVPDIVSVELTRAFEEKMEEIMAGKAKKDEVIEESRGQLIKILKV 577
Query: 601 FLDARLKKVKLL---EAMGIFFERWSGGEDQQAA-------------------GEVVRQC 638
F + L K+L G+ + S + +A G V+ +C
Sbjct: 578 FKEKELDIGKMLLETTGTGVTTSKDSAKVSEDSAKVPKGTASSKAQEGRKTGKGLVLGKC 637
Query: 639 GICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
C +V + G VGC +P+C + + E T TC C PV I+
Sbjct: 638 PKCGGDLVVRYNRKTGKRFVGCSNWPKC-DVTYPLLQRGEIIPTDKTC--CNGAPVVKIR 694
Query: 699 FKFRQHEI 706
K R++EI
Sbjct: 695 EKGREYEI 702
>gi|257075816|ref|ZP_05570177.1| DNA topoisomerase I [Ferroplasma acidarmanus fer1]
Length = 748
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 156/558 (27%), Positives = 261/558 (46%), Gaps = 30/558 (5%)
Query: 60 LMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
+M S++GH++ DF E ++ W D L + + V + + + ++
Sbjct: 37 IMVSLSGHILGADFPEEFKDWVKSDLDKLIDSNIIYKVTNQRA---YSALKSFSGIDNII 93
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
+ D DREGE I E ++ + +RRA+FSAL +E+ A NL+D N AD+
Sbjct: 94 IATDYDREGELIGVEALKFIEP--GYTNIRRAKFSALTSQEVKDAFDNLLDVNYGLADSA 151
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDR--NLVLSYGPCQFPTLGFVVERYWEI 237
AR+EIDL GA TRF SVT +R +S G Q PTL +VER EI
Sbjct: 152 KAREEIDLLWGAVLTRFF----------SVTSNRLWKDFISVGRVQTPTLALIVEREEEI 201
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
++ E+++ IN + +G ++ D A I+ + V + ++K
Sbjct: 202 KSFVPEKYFVINVTF--NKGIDFQGVYEKNIKDEDEANKIFN-AINGNDGIVKSYKNEKK 258
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
Y P P ST + + ASR ++ + MK+AE LY +G ISYPRT+ + L I
Sbjct: 259 EVYKPPPFSTTDFLREASR-IGVTPSNAMKIAEKLYMSGLISYPRTDNTVYQRSIPLKSI 317
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
Q+ G ++ A+ +L P G + HPPI+P + + + + +
Sbjct: 318 AQKFEGT-EFDTEAKMVLGQEKIY---PSRGKVETTDHPPIYPVSYP--KKALTGAYKNI 371
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
YEL+VR FLA + + AV ++ +I+I G F SG I+ + D+Y++ +P
Sbjct: 372 YELIVRRFLATLYKNAVIEKSDADIDIKGYNFKVSGEKIIDNGWFDIYKYRKLRESKLPE 431
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
V G+ ++ T PP A LL M+ +GT +T HD I+KL DR +A
Sbjct: 432 LVIGETVKGKKWDMEEKYTEPPKRYDVASLLKLMESLNLGTKSTRHDIIQKLNDRNFATG 491
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
+ PT +G + + ++ KP++ + +E +M +++ K DV+ + +
Sbjct: 492 NP---LRPTPLGIGFIKSITTIDSDIAKPDMTAELEKEMDKIAENQKKLDDVVNDSRNML 548
Query: 598 KACFLDARLKKVKLLEAM 615
+ R K ++ E +
Sbjct: 549 HSALKGFRGNKEEIKETI 566
>gi|257790892|ref|YP_003181498.1| DNA topoisomerase type IA central domain-containing protein
[Eggerthella lenta DSM 2243]
gi|317488397|ref|ZP_07946951.1| DNA topoisomerase [Eggerthella sp. 1_3_56FAA]
gi|325830508|ref|ZP_08163961.1| DNA topoisomerase [Eggerthella sp. HGA1]
gi|257474789|gb|ACV55109.1| DNA topoisomerase type IA central domain protein [Eggerthella lenta
DSM 2243]
gi|316912501|gb|EFV34056.1| DNA topoisomerase [Eggerthella sp. 1_3_56FAA]
gi|325487417|gb|EGC89858.1| DNA topoisomerase [Eggerthella sp. HGA1]
Length = 849
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 187/685 (27%), Positives = 299/685 (43%), Gaps = 64/685 (9%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L +AP+ K +P++K +I ++L+ A++ +++ D DREGE I + + + VN
Sbjct: 117 LVYAPINK-LPKEK-EIIRSLKNLAKKADSVIIATDFDREGELIGSDALSCIQEVNPTAP 174
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHID 207
+ RAR+SA EI A NLV+ + A A +RQ+IDL GA TR+ T++ + +
Sbjct: 175 VSRARYSAFTKEEITHAFDNLVELDVNLASAGASRQDIDLIWGAVLTRYLTLVKFAGYGN 234
Query: 208 SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGH 267
V S G Q PTL VV R E A E++W I + ++ +
Sbjct: 235 --------VRSSGRVQTPTLALVVARERERLAFVPEDYWVIRGAFGADPDSFEAPHATAR 286
Query: 268 LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMK 327
A + ATV V ++++ PP P +T L AS +S TM+
Sbjct: 287 FKAEAEAQAVMAHVEGATRATVASVEKKKRTVQPPAPFNTTSLMAAASAE-GLSPARTMR 345
Query: 328 VAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGS 387
+AE LY G+ISYPR + + S +L V+ G+P + PY + LL A G
Sbjct: 346 IAESLYMDGYISYPRVDNTVYPSSLDLADTVKAISGNPAYAPYCKELL--AKGKL-TATR 402
Query: 388 GGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGE 447
G + HPPI+PT ++ + D YKLY L+ R FLA +S+ AV T V +++ E
Sbjct: 403 GKKETTDHPPIYPTAKATPDDLAPAD-YKLYNLIARRFLATLSEAAVIEGTKVTLDVNAE 461
Query: 448 VFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
F G V++ Y +Y + +P G+ T PP S+ L
Sbjct: 462 PFVAKGDVLVKPGYRAIYPYGLKKDEQLPALSEGETVAFNGAVCTKKQTEPPARYSQGKL 521
Query: 508 LSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA-NTRFAPTNIGEALVMGYDDMGYELWKP 566
+ M+K G+GT +T H +++R YA+K N P+ +G A+ D + P
Sbjct: 522 IQEMEKLGLGTKSTRH----AIIERLYAVKYCMNDPIEPSQLGMAVCDALDKFAPHITHP 577
Query: 567 NLRSMMESDMKEVSVGNKSKADVL---ANCLQQMKACFLDARLKKVKLLEAMGIFFERWS 623
+ + +E +M ++ G +KA V+ N L + A L ++VK A + + +
Sbjct: 578 EMTAELEEEMDNIAEGRTTKAQVVDTSRNLLSEQLASLL-PHSEEVKEALADAVAADAYV 636
Query: 624 GGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTT 683
G C C + + + ++ +GC +P C LP EA
Sbjct: 637 G------------PCPKCGKDLQLRASQKTRSMFIGCAGWPDCDVTYPLPKGKVEA--VP 682
Query: 684 NTCNSCTPGPVYLIQFKFRQHE--IPPGFNVNH-----LGCIGGCDE------------- 723
C +C V + F+ + I P + N +G C E
Sbjct: 683 EPCPTCGMPQVKVTAFRSKPRTICIDPHCSTNQEPDVVVGECPACKEKGIQAKLIAQKNP 742
Query: 724 -TLRQLI-----EICGTGSRIPARG 742
TL++ I + CGTG +P G
Sbjct: 743 RTLKRFIRCENYDDCGTGYPLPQYG 767
>gi|20091341|ref|NP_617416.1| DNA topoisomerase I [Methanosarcina acetivorans C2A]
gi|19916471|gb|AAM05896.1| DNA topoisomerase, type I [Methanosarcina acetivorans C2A]
Length = 752
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 164/632 (25%), Positives = 288/632 (45%), Gaps = 40/632 (6%)
Query: 61 MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIK--KTLEEEARRCQWL 118
+ ++GH++ +DF + Y W D L A + P ++K + +TL +EA R +
Sbjct: 50 VVGLSGHIVGIDFQKEYNNWQKVDARALIDAEI-TTTPINRKIVTALRTLGKEADR---V 105
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA 178
+ D DREGE I E + + + VN + R R+SA+ + I A N + ADA
Sbjct: 106 TIATDYDREGELIGVEALNIIKKVNPEVPFDRVRYSAITPKAIDAAFTNPTSVDFDLADA 165
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
+RQ IDL GA+ TR+ ++ + LS G Q PTL VV+R E
Sbjct: 166 GHSRQVIDLVWGAALTRYISLAAGRLG--------KMFLSVGRVQSPTLSLVVDREKERN 217
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRG--HLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
+W I+ +++ G TFS D A +++ ++ A + ++ +
Sbjct: 218 IFVPTPYWEIHVELETKAG-ETFSAQHSTRRFLDKEEATAVFKKLGKK--AELKEIEKGT 274
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
K PP P +T A+ +S + M++AE LY G+ISYPRT+ + +L
Sbjct: 275 KSDLPPTPFNTTGF-ISAANSIGLSPANAMRIAESLYTNGYISYPRTDNTVYPETLDLRA 333
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
++ P + +A LL+ A + P G + HPPI+P + ES ++ +K
Sbjct: 334 QIEIFTEGP-FKEFADALLEKAELV---PTRGKKETTDHPPIYPASLAK-ESELKEEEWK 388
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
+YELVVR F A + P+ + + I E F +G +L + Y + + P
Sbjct: 389 VYELVVRRFFATFAGPSTWETMRLRLEINAEEFRANGARLLEPGWRWYYPYNVPEDRLFP 448
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
G+ + T+PP + L++ M++ G+GT AT H+ I KL R Y
Sbjct: 449 ELSEGEILKVIKKEMLDKETQPPGRYGQGRLINIMEELGLGTKATRHEIISKLYSRAYI- 507
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
PTN A+V + + KP++ ++E +M ++ G + VL +
Sbjct: 508 --HGNPVQPTNTSFAVVETLEKYSPTITKPDMTKLLEENMDLIAEGKIKEDTVLEESREM 565
Query: 597 MKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNL 656
++ F + + K++E++ ED+ ++ C +C + +++++S+ G+
Sbjct: 566 LQQVFSELDKNRDKIIESLQAGLR-----EDK-----IIGNCSLCG-NELMIRRSKRGSR 614
Query: 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
+GC +P C ++ LP S + VT C +
Sbjct: 615 FIGCSNYPNCTFSLPLPKS-GQIVVTDKQCET 645
>gi|414864983|tpg|DAA43540.1| TPA: hypothetical protein ZEAMMB73_751776, partial [Zea mays]
Length = 139
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/120 (85%), Positives = 111/120 (92%)
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
+LYE VVRHFLAC SQPAVGAET VEI+IAGE F+ SGRVILAKNYLDVYRF+SWGG ++
Sbjct: 20 RLYEFVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVILAKNYLDVYRFDSWGGTLL 79
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
PTY GQQF+PTTLTLDSGVTRPPPLL+EADLLSCMDKAGIGTDATMHDHIKKLLDR YA
Sbjct: 80 PTYNIGQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYA 139
>gi|315425546|dbj|BAJ47207.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
gi|343484402|dbj|BAJ50056.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
Length = 606
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 170/593 (28%), Positives = 275/593 (46%), Gaps = 57/593 (9%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
++ VAEK SVA+++ ++S + + +++SV GH+
Sbjct: 14 KLIIVAEKASVARAIKAVVSAAK-------------------------ANAVVSSVRGHM 48
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQ---WLVLWLDCD 125
ME D + Y +W + P ++ +RK V DK + E+ + LV+ D D
Sbjct: 49 MEADLPDGY-EWGAKHPFEIIK--LRKVV--DKISDNRVFEQLVKVFSGGGVLVIATDND 103
Query: 126 REGENIAFEVIEVCRAVNC-HLVLRRARFSALIDREIHQAVQNLVDP-NQWFADAVDARQ 183
EGE I +E+++V R V V+ R RF+++ RE+ +++NL N + + RQ
Sbjct: 104 SEGELIGYEILQVYRRVTGGEPVVYRMRFNSVDRRELFASLRNLEKGLNMRWVEKARFRQ 163
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
DL GA+FTR T+ + V +S+G CQ PTL FVVER EIQ + +
Sbjct: 164 IFDLVTGAAFTRLLTLSTRRLAPVRV-------ISWGSCQTPTLNFVVEREKEIQQFKPQ 216
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
++W I + + G F +++ A ++E + A VT + EK P
Sbjct: 217 KYWVIEATLRKASGEE-FKAATQQIWNRDEAEQVFEKARKAGEAVVTSYTKSEKTLPRPL 275
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P+ T ++ + +R +S+ + + E+LY G+ISYPRT+T+ + G + ++
Sbjct: 276 PMRTDDVLRDLTRITGVSANRLLSMMEELYAEGYISYPRTDTNRYRRGFDFQTPLKAVTA 335
Query: 364 HPDWGPYAQRLLDHAAGLWR-NPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
A L D +P +G DD AHPPI+P G Q ++E +
Sbjct: 336 -------ADALRDAKPDKAEPDPRNGSRDDGAHPPIYPVATFRGSGVLMQ----IWEYIA 384
Query: 423 RHFLA-CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
F A AV + EI I G FS G + + YL V+ + +P + G
Sbjct: 385 CRFYANAFFDDAVQSTAKAEIGIDGIAFSAEGSSVTKQGYLQVFSYFRPRDKPLPELMVG 444
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ +T+ T+PPP L+EADLL M+K GIGTDAT + + +R YA++ A
Sbjct: 445 EKLQIIDVTIREDETKPPPRLTEADLLRLMEKNGIGTDATRASFPQLITERNYAVR-AGR 503
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCL 594
F PT +G AL+ + L P R ++E M ++ G S + L L
Sbjct: 504 FFKPTPLGMALIESLAEADTRLITPETRRLVEDYMAKIERGETSFQESLEQSL 556
>gi|386001200|ref|YP_005919499.1| DNA topoisomerase I [Methanosaeta harundinacea 6Ac]
gi|357209256|gb|AET63876.1| DNA topoisomerase I [Methanosaeta harundinacea 6Ac]
Length = 738
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 169/600 (28%), Positives = 272/600 (45%), Gaps = 50/600 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEK +VAK +A IL+ + + R + I F + + ++ ++GH++
Sbjct: 3 LIIAEKHNVAKRIAQILAGS-----KPKVKRVHGIEAFYFDDK------VVMGLSGHIVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+D+ Y W D DL HA V + K I L + + + + D DREGE
Sbjct: 52 VDYPPGYNNWQKVDYRDLIHAEVVTRPTQGK--IVSALHDLGKDADRITIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + + N + R RFSA+ EI A ++ + + A + +ARQ +DL G
Sbjct: 110 IGVEALRIAEDANPTIKADRVRFSAITKGEIQDAFESPGEVDFDLASSGEARQVVDLIWG 169
Query: 191 ASFTRFQTM----LLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
A+ TRF ++ L K F LS G Q PTL +V+R EI+A + + +W
Sbjct: 170 AALTRFISITSGRLGKGF------------LSVGRVQSPTLALIVDREKEIEAFKPQPYW 217
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
I+ E +G +++ A I+E + ATV ++++ + PP P
Sbjct: 218 EISACL---EKDLRVKHEKGRIWEGDLARSIFEELGE--VATVVSIKEKTRTDRPPAPFD 272
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
T AS S+ + M++AE LY +GFISYPRTE + +L +V
Sbjct: 273 TTAFISAASG-IGFSAANAMRIAEWLYTSGFISYPRTENTVYPKTLDLRALVSIF----K 327
Query: 367 WGPY---AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
GP+ A+R+L P G HPPI+PT + ++ D +K+YELVVR
Sbjct: 328 KGPFREDAERVLSGPM----VPTRGKRFSTDHPPIYPTA-PAAKADMKPDQWKIYELVVR 382
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
FLA +S P+ V + I G+ F +G + + Y + ++P G++
Sbjct: 383 RFLATLSGPSRWIVMNVRVEIDGQPFRATGARQIEAGWRACYPYSKAAEEILPQLSEGEK 442
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
L+ T+PP + L+ MD+ G+GT +T H+ I KL R Y
Sbjct: 443 LRVLGKELEEKETQPPSRYGQGRLVKLMDELGLGTKSTRHEIISKLYARAYV---QGNPM 499
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
PTN A+V + KP++ +E DM +++ G+ + V+ + A F D
Sbjct: 500 KPTNTAYAVVEALQQHSPNITKPDMTRTLEEDMTKIANGHVGEEAVIEESRSMLDAVFDD 559
>gi|341581825|ref|YP_004762317.1| DNA topoisomerase I [Thermococcus sp. 4557]
gi|340809483|gb|AEK72640.1| DNA topoisomerase I [Thermococcus sp. 4557]
Length = 719
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 203/731 (27%), Positives = 318/731 (43%), Gaps = 64/731 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKP+VA+ +A L++ + +R G+ Y YEF + +++ GHL
Sbjct: 4 LIIAEKPNVARKIAYALAEGKPVRKTIGKVGY---YEFTRDGK----RIIVAPAVGHLFS 56
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPED----KKDIKKTLEEEARRCQWLVLWLDCDR 126
L K + D+ PV +V E KD K L A+R V+ D D
Sbjct: 57 LAPKV---KTYGYPIFDIEWVPV--YVAEKGKSYAKDYIKALATLAKRADEFVVACDYDT 111
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQE 184
EGE I + ++ ++ +R +FSAL +++ +A NL +P N ADA AR
Sbjct: 112 EGEVIGYTALKYACGIDPSRA-KRMKFSALTKKDLLKAWYNL-EPTINFGMADAGIARHV 169
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + +R T +K + VLS G Q PTL F+V+R EIQ +
Sbjct: 170 LDWYWGVNLSRALTSAIKR------ASGKWQVLSTGRVQGPTLKFLVDREKEIQNFKPTP 223
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I + T + + + D A I E + P A V KV +++ + PP P
Sbjct: 224 YWVIKMLLEKNGEQYTAVYEKERILDEDEAKRIVEEAKKGP-AFVEKVEVKQQKRNPPVP 282
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L++ A F S + T+++A+ LY+ G SYPRT + N I+Q
Sbjct: 283 FDLGTLQREAYSAFGYSPKKTLELAQKLYERGLTSYPRTSSQKLPKNLNFRPILQNLAKL 342
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P++ P+A LL P G +D AHP I+PT ++D LY+L+VR
Sbjct: 343 PEYKPFAHELLGKER---LKPVEGKKEDPAHPAIYPTGELPKPGDLTKDEQNLYDLIVRR 399
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHGQQ 483
FLA +PAV V IN F G + + +L VY ++ + +++P + G+
Sbjct: 400 FLALFMEPAVREIMKVVINSNSHRFILGGARTVKEGWLKVYGKYVKFDEVILPAFKEGEP 459
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + T+PP S A ++ M+ GIGT AT ++ L R Y + +
Sbjct: 460 VKVIQIKREKKKTKPPARYSPAAVIKRMEDLGIGTKATRAQILETLYSRGYI--EGKRKI 517
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL---ANCLQQMKAC 600
T +G +V + ++ L E M E+ G + DV+ N L ++
Sbjct: 518 KVTPLGMRVVEALEKNVPDIVSVELTKAFEEKMAEIMAGKADREDVIEESKNQLIKILKV 577
Query: 601 FLDARLKKVK-LLEAMGI------FFERWSG------GEDQQA------AGE------VV 635
F + L K L+E G R +G GE+++A GE V+
Sbjct: 578 FKEKELDIGKMLMETTGTGATTSKTAARKAGAVKELSGEEEKAVKKAVDGGERRKEPLVL 637
Query: 636 RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVY 695
+C C +V + G VGC +P+C N + E T TC C PV
Sbjct: 638 GKCPKCGGDLVVRYNRKTGKRFVGCSNWPKC-NVTYPLLQRGEIIPTDKTC--CGGAPVV 694
Query: 696 LIQFKFRQHEI 706
I+ K R++EI
Sbjct: 695 KIREKGREYEI 705
>gi|269217134|ref|ZP_06160988.1| DNA topoisomerase [Slackia exigua ATCC 700122]
gi|269129271|gb|EEZ60356.1| DNA topoisomerase [Slackia exigua ATCC 700122]
Length = 838
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 186/685 (27%), Positives = 304/685 (44%), Gaps = 62/685 (9%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L +AP+ K +P++K DI ++L+ A++ +++ D DREGE I + + + VN +
Sbjct: 118 LTYAPIEK-LPKEK-DIIRSLKNLAKKADEIIIATDFDREGELIGSDALSCIQEVNPDVP 175
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHID 207
+ RAR+SA EI A +LV + A A ++RQ+IDL GA TRF T++ + +
Sbjct: 176 VARARYSAFTKPEIEHAFSHLVPLDVNLAQAGESRQDIDLIWGAVLTRFLTIVKFAGYGN 235
Query: 208 SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMR 265
V S G Q PTL +V R E A E++W + + ++E AT++ R
Sbjct: 236 --------VRSSGRVQTPTLALIVARERERMAFVPEDYWVVKGLFADGADEFEATYAQKR 287
Query: 266 GHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHT 325
AV+ + V +A V+ + ++ + PP P +T L A+ +S T
Sbjct: 288 ISDKAQADAVMAHIEGVD--SARVSAIEKRRRTIAPPAPFNTTSLMAAAANE-GLSPART 344
Query: 326 MKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP 385
M++AE LY AG ISYPR + + +L +V+ P + PY Q+LL A +
Sbjct: 345 MRLAESLYMAGIISYPRVDNTVYPDSLDLADVVRVLSKVPAYAPYCQKLLSKGA---LSA 401
Query: 386 GSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
G + HPPI+PT + +S +KLY L+ R FLA +S+ A+ T V ++
Sbjct: 402 TRGKQETTDHPPIYPTAPADPDS-LDPAQWKLYNLIARRFLATLSESAITENTKVTFDVN 460
Query: 446 GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEA 505
E F TSG + + +Y + + +P GQ + T+PP S+
Sbjct: 461 SEPFDTSGVITQKPGFRAIYPYGRKKDVQLPPLEQGQTVDFKGAACEKKQTQPPARYSQG 520
Query: 506 DLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANTRFAPTNIGEALVMGYDDMGYELW 564
L+ M+K G+GT AT +++R Y +K N P+ +G A+ ++
Sbjct: 521 VLIQEMEKLGLGTKATRAS----MIERLYQVKYIQNDPIEPSQLGIAVCDALGKFAPQIT 576
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSG 624
P++ + +E DM ++ G K++ DV+ L + L E + E
Sbjct: 577 SPDMTATLEEDMNRIAEGEKTRQDVVD----------LSRDILNDVLRELLPHQEEVKDA 626
Query: 625 GEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTN 684
D AA V C C + ++ ++ +GC +P+C LP E+
Sbjct: 627 LADAVAADAYVGPCPKCGRDLQIRASNKTHSMFIGCAGWPECDVTYPLPKGKIES--MEE 684
Query: 685 TCNSCTPGPVYLIQF--KFRQHEIPPG--FNVNHLGCIGGC-----------------DE 723
C +C + + F K R I P NV +G C
Sbjct: 685 RCPTCGMPQIKVTAFRSKPRVQCIDPSCPTNVEPDLVVGTCPACAAKGLDKKLVATKNPR 744
Query: 724 TLRQLI-----EICGTGSRIPARGR 743
TL++ I E C T +PA G+
Sbjct: 745 TLKRFIRCENYEECETSYPLPATGK 769
>gi|282165000|ref|YP_003357385.1| DNA topoisomerase I [Methanocella paludicola SANAE]
gi|282157314|dbj|BAI62402.1| DNA topoisomerase I [Methanocella paludicola SANAE]
Length = 679
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 187/666 (28%), Positives = 284/666 (42%), Gaps = 47/666 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK A +AGIL ++ G + Y R + + + GH++
Sbjct: 3 LIITEKHDAANKIAGILFPDRSAERHGGVTVY----------RSKAAGAAVVGLAGHIVA 52
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF Y +W + P+ L AP+ VP KKDI L A + + D DREGE
Sbjct: 53 LDFPGEYSRWSAHPPSTLIGAPIV-SVP-TKKDIIGALASLAPSATKVTIATDYDREGEL 110
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E + + R +S+ +EI QA V + A A + RQEIDL G
Sbjct: 111 IGVEAYNIIHRLT-KAPFERVHYSSFAKQEIEQAFARPVPLDFNLAAAGECRQEIDLVWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ D LS G Q P L +V+R EI A S+ +W +
Sbjct: 170 AALTRFVSLAGNKAGKD--------FLSVGRVQTPLLAIIVDREKEILAFVSKPYWELVA 221
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+ + T +G A I++ + TA V V + K + P P ST E
Sbjct: 222 TLLKGQEAFTAGHAKGRFDKKEEAAAIHKKLGK--TALVKGVLRDRKKEPAPVPFSTTEF 279
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
K A+ S+ M+VAE+LY G+ISYPRT+ + + +L V P++
Sbjct: 280 LKAAAS-IGYSAASAMQVAEELYINGWISYPRTDNTVYPATLDLRQTVGMFKASPEFAKS 338
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
A LL G + K HPPI+P +S +++ + +KLYELVVR F A +S
Sbjct: 339 ALELLGQKT---LTATRGKVESKDHPPIYPVACAS-KTQMDERKWKLYELVVRRFFATLS 394
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
P I+I+GE F + G+ + A + Y + VIP G +
Sbjct: 395 PPCEWEMVKASIDISGEPFISDGKRMSAPGWRKHYPYGMPKDEVIPPLAVGDVLAVKKVD 454
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
L T PP + L+ M+K G+GT AT H+ + KL +R Y + PT G
Sbjct: 455 LLEKKTEPPRRYGQGKLIETMEKLGLGTKATRHEALSKLYNRGYIEGNPPK---PTQTGI 511
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK 610
L+ + P + + +ESDM ++ K DV ++ F
Sbjct: 512 TLIDALKAHAGAITSPGMTARLESDMDGIAESRLRKDDVTGESKAMLRTIF--------D 563
Query: 611 LLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSR-DGNLMVGCLAFPQCR 667
LE+ R G +A + G C + S +V+++++ D + C FP+CR
Sbjct: 564 QLES-----HRADIGRTLRAGSAMDSPIGPCPKCGSPLVIRETKADKRKFIACTGFPECR 618
Query: 668 NAVWLP 673
N +P
Sbjct: 619 NTYNVP 624
>gi|303233186|ref|ZP_07319859.1| DNA topoisomerase [Atopobium vaginae PB189-T1-4]
gi|302480771|gb|EFL43858.1| DNA topoisomerase [Atopobium vaginae PB189-T1-4]
Length = 918
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 201/770 (26%), Positives = 324/770 (42%), Gaps = 118/770 (15%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYE---FNYSIRGQPCHMLMTSVTGH 67
L V EK A+ +A +LS G + +K+Y+ + ++ G C + + GH
Sbjct: 3 LIVTEKHDAAQQIARLLST-------VGNPKADKVYDTPIYRFTYHGDDC--VCIGLRGH 53
Query: 68 LMELDFD----------------------------------ERYRKWHSCDPAD------ 87
+M DF ++ RK + D D
Sbjct: 54 IMAPDFPVSMHFGPRKGWYATSQDGERLQSAAPDTLPRPPYDKKRKPYLSDGIDIKGWKL 113
Query: 88 -----LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAV 142
L AP+ K E K I + L+ A++ +V+ D DREGE I + + + V
Sbjct: 114 DSLPYLIWAPIEKLPSE--KGIIRALKNLAKKASSIVIATDFDREGELIGSDALHQMQQV 171
Query: 143 NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML-- 200
+ + RAR+SA +EI A +LV +Q ADA ++RQ IDL GA TR+ TM
Sbjct: 172 APDIPVFRARYSAFTKQEIDTAFSHLVTLDQNLADAGESRQYIDLVWGAVLTRYLTMARF 231
Query: 201 --LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCS------- 251
L N V S G Q PTL VVE+ E QA E++W I+ +
Sbjct: 232 SGLGN------------VRSAGRVQTPTLALVVEKERERQAFIPEDYWVISATLHEGAEG 279
Query: 252 -------------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
+ +G+ + + + A +Y A +T ++ +
Sbjct: 280 AEGANAAGAGAAINADADGSFKATHTTARFTNKSEADAVYAAVKDASCARITNREEKSRT 339
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
PP P +T L+ A+ +S TM++AE LY G ISYPR + + S NL V
Sbjct: 340 TRPPAPFNTTSLQAAAAAEG-LSPARTMRIAESLYMEGLISYPRVDNTVYPSSLNLRECV 398
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
P + PY ++LL A + G HPPI+PT + + + +KLY
Sbjct: 399 TMLKKVPQYRPYCEQLL---AQPQLHATRGKQQTTDHPPIYPTAPADPQ-KLQPAAWKLY 454
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
L+ R FLA +SQ +V +T + I+I + F +G V+ + +Y F V+P
Sbjct: 455 NLIARRFLATLSQQSVSLQTKLTIDINEQPFVATGVVLATPGFRAIYPFGLRKDDVLPNL 514
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G + D+ T PP S+ L+ M+K G+GT +T I++L D Y D
Sbjct: 515 QPGDVASVLAIQYDAKQTEPPARYSQGRLIQEMEKRGLGTKSTRASIIQRLYDVKYLKDD 574
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
P+ +G A++ + P + + +E DM V+ G ++ V+++ + +
Sbjct: 575 PA---CPSQLGCAVIDALSQYAPHITTPEMTAQLEEDMTNVAEGKDTQISVVSHS-RALL 630
Query: 599 ACFLDARLKKVKLL-EAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKS-RDGNL 656
A +DA + V + EA+ +D A V C C + ++V+K S + +
Sbjct: 631 ASMIDALIAHVDDVGEAL----------KDAVTADAKVGVCPTCGK-DLVMKNSPKTRSH 679
Query: 657 MVGCLAFPQCRNAVWLP-GSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHE 705
VGCL +P C +P G + C+ C V + F+ R +E
Sbjct: 680 FVGCLGWPDCSVTYPVPTGKIEALQGDAARCSVCGAPKVKVHPFRARAYE 729
>gi|402828130|ref|ZP_10877021.1| DNA topoisomerase I [Slackia sp. CM382]
gi|402286731|gb|EJU35193.1| DNA topoisomerase I [Slackia sp. CM382]
Length = 836
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 186/685 (27%), Positives = 303/685 (44%), Gaps = 62/685 (9%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L +AP+ K +P++K DI ++L+ A++ +++ D DREGE I + + + VN
Sbjct: 116 LTYAPIEK-LPKEK-DIIRSLKNLAKKADEIIIATDFDREGELIGSDALSCIQEVNPDAP 173
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHID 207
+ RAR+SA EI A +LV + A A ++RQ+IDL GA TRF T++ + +
Sbjct: 174 VARARYSAFTKPEIEHAFSHLVPLDVNLAQAGESRQDIDLIWGAVLTRFLTIVKFAGYGN 233
Query: 208 SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMR 265
V S G Q PTL +V R E A E++W + + ++E AT++ R
Sbjct: 234 --------VRSSGRVQTPTLALIVARERERMAFVPEDYWVVKGLFADGADEFEATYAQKR 285
Query: 266 GHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHT 325
AV+ + V +A V+ + ++ + PP P +T L A+ +S T
Sbjct: 286 ISDKAQADAVMAHVEGVD--SARVSAIEKRRRTIAPPAPFNTTSLMAAAANE-GLSPART 342
Query: 326 MKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP 385
M++AE LY AG ISYPR + + +L +V+ P + PY Q+LL A +
Sbjct: 343 MRLAESLYMAGIISYPRVDNTVYPDSLDLADVVRVLSKVPAYAPYCQKLLSKGA---LSA 399
Query: 386 GSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
G + HPPI+PT + +S +KLY L+ R FLA +S+ A+ T V ++
Sbjct: 400 TRGKQETTDHPPIYPTAPADPDS-LDPAQWKLYNLIARRFLATLSESAITENTKVTFDVN 458
Query: 446 GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEA 505
E F TSG + + +Y + + +P GQ + T+PP S+
Sbjct: 459 SEPFDTSGVITQKPGFRAIYPYGRKKDVQLPPLEQGQTVDFKGAACEKKQTQPPARYSQG 518
Query: 506 DLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANTRFAPTNIGEALVMGYDDMGYELW 564
L+ M+K G+GT AT +++R Y +K N P+ +G A+ ++
Sbjct: 519 VLIQEMEKLGLGTKATRAS----MIERLYQVKYIQNDPIEPSQLGIAVCDALGKFAPQIT 574
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSG 624
P++ + +E DM ++ G K++ DV+ L + L E + E
Sbjct: 575 SPDMTATLEEDMNRIAEGEKTRQDVVD----------LSRDILNDVLRELLPHQEEVKDA 624
Query: 625 GEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTN 684
D AA V C C + ++ ++ +GC +P+C LP E+
Sbjct: 625 LADAVAADAYVGPCPKCGRDLQIRASNKTHSMFIGCAGWPECDVTYPLPKGKIES--MEE 682
Query: 685 TCNSCTPGPVYLIQF--KFRQHEIPPG--FNVNHLGCIGGC-----------------DE 723
C +C + + F K R I P NV +G C
Sbjct: 683 RCPTCGMPQIKVTAFRSKPRVQCIDPSCPTNVEPDLVVGTCPACAAKGLDKKLVATKNPR 742
Query: 724 TLRQLI-----EICGTGSRIPARGR 743
TL++ I E C T +PA G+
Sbjct: 743 TLKRFIRCENYEECETSYPLPATGK 767
>gi|315427545|dbj|BAJ49146.1| DNA topoisomerase III [Candidatus Caldiarchaeum subterraneum]
Length = 608
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 167/584 (28%), Positives = 271/584 (46%), Gaps = 57/584 (9%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
++ VAEK SVA+++ ++S + + +++SV GH+
Sbjct: 14 QLIIVAEKASVARAIKAVVSAAK-------------------------ANAVVSSVRGHM 48
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEAR---RCQWLVLWLDCD 125
ME D + Y +W + P ++ +RK V DK + E+ + R LV+ D D
Sbjct: 49 MEADLPDGY-EWGAKHPFEIIK--LRKVV--DKISDNRVFEQLVKVFSRGGVLVIATDND 103
Query: 126 REGENIAFEVIEVCRAVNC-HLVLRRARFSALIDREIHQAVQNLVDP-NQWFADAVDARQ 183
EGE I +E+++V R V V+ R RF+++ RE+ +++NL N + + RQ
Sbjct: 104 SEGELIGYEILQVYRRVTGGEPVVYRMRFNSVDRRELFASLRNLEKGLNMRWVEKARFRQ 163
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
DL GA+FTR T+ + V +S+G CQ PTL FVVER EIQ + +
Sbjct: 164 IFDLVTGAAFTRLLTLSTRRLAPVRV-------ISWGSCQTPTLNFVVEREKEIQQFKPQ 216
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
++W I + + G F +++ A +++ + A VT + EK P
Sbjct: 217 KYWVIEATLRKASGE-EFKAATQQIWNRDEAEQVFKKARKAGEAVVTSYTKSEKTLPRPL 275
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P+ T ++ + +R +S+ + + E+LY G+ISYPRT+T+ + G + ++
Sbjct: 276 PMRTDDVLRDLTRITGISANRLLSMMEELYAEGYISYPRTDTNRYRRGFDFQTPLKAVTA 335
Query: 364 HPDWGPYAQRLLDHAAGLWR-NPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
A L D +P +G DD AHPPI+ G Q ++E +
Sbjct: 336 -------ADALRDAKPDKAEPDPRNGSRDDGAHPPIYLVATFRGSGVLMQ----IWEYIA 384
Query: 423 RHFLA-CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
R F A AV + EI I G FS G + + YL V+ + +P G
Sbjct: 385 RRFYANAFFDDAVQSTAKAEIGIGGIAFSAEGSSVTKQGYLQVFSYFRPRDRPLPELGVG 444
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ + + T+PPP L+EADLL M+K GIGTDAT + + +R YA++ A
Sbjct: 445 EKLQIIDVAIREDETKPPPRLTEADLLRLMEKNGIGTDATRAFFPQLITERNYAVR-AGR 503
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
F PT +G AL+ + L P R ++E M ++ G S
Sbjct: 504 FFKPTPLGMALIESLAEADTRLITPETRRLVEDYMAKIERGETS 547
>gi|448344818|ref|ZP_21533720.1| DNA topoisomerase I [Natrinema altunense JCM 12890]
gi|445636924|gb|ELY90081.1| DNA topoisomerase I [Natrinema altunense JCM 12890]
Length = 1378
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 155/516 (30%), Positives = 245/516 (47%), Gaps = 33/516 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS G R +YE+ G+ C ++GH++
Sbjct: 3 LIITEKDNAARRIADILS---GGTYDSSRENGVNVYEWG----GKRC----VGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF Y W +P +L A V K K++I TL ARR Q + + D DREGE
Sbjct: 52 VDFPSEYSDWRDVEPVELIDADVEKTAT--KENIVATLRLLARRAQRVTIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E ++ R V+ + +RR RFS++ + E+ A + + A A +ARQ IDL G
Sbjct: 110 IGKEAYDIVRNVDEDVPIRRVRFSSITENEVQNAFDEPDELDFDLAAAGEARQIIDLIWG 169
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TR+ ++ D +S G Q PTL +V+R EIQA E EE+W +
Sbjct: 170 AALTRYLSLSAGQLGDD--------FISVGRVQSPTLKLIVDREREIQAFEPEEYWELFA 221
Query: 251 SHKSEEGTATFSWM--------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ +E + + +++ + A +YE + ATV V ++ + PP
Sbjct: 222 DLRKDETSFEAQYFYRDEDDNEAERVWEESVADEVYETLADDDVATVVDVTRRTRTDTPP 281
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P +T + RA+ S++ M +AEDLY AG+I+YPRT+ + + ++ E +
Sbjct: 282 EPFNTTQF-IRAASAIGYSAKRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEDLLDEFV 340
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP G A+ LL+ P G + HPPIHPT S D +++YELVV
Sbjct: 341 NHPSLGESAESLLEADE---ITPTEGDEETTDHPPIHPTGEIPSRGDISDDEWEVYELVV 397
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQ 482
R F A V+ AV V +G+ ++ Y DVY + S +P G+
Sbjct: 398 RRFYATVADAAVWEHLKVVAEADDHRLKANGKRLVEPGYHDVYPYFSTTENYVPDVDEGE 457
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
+ + + L+ T+PP ++ L+ M++ GIGT
Sbjct: 458 ELALSDVELEDKQTQPPRRYGQSRLIETMEEMGIGT 493
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
++T H+ ++KL DR Y D PT + A+V ++ + + + +E+DM
Sbjct: 1030 NSTRHNTLEKLYDRGYIESDPPR---PTKLAMAVVDAAENYADRIVSEEMTAQLEADMDA 1086
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQC 638
++ G + DV + ++ F A L + E +G R S +D++ C
Sbjct: 1087 IASGEATLDDVTDESREMLEEIF--ANLADSR--EEIGDHL-RESLKDDKRLG-----PC 1136
Query: 639 GICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGS 675
C E ++++++SR G+ +GC +P C N + LP +
Sbjct: 1137 PDCGE-DLLVRRSRHGSYFIGCDGYPDCENTLPLPST 1172
>gi|389852119|ref|YP_006354353.1| DNA topoisomerase I [Pyrococcus sp. ST04]
gi|388249425|gb|AFK22278.1| DNA topoisomerase I [Pyrococcus sp. ST04]
Length = 691
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 184/699 (26%), Positives = 310/699 (44%), Gaps = 38/699 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKP+VA+ +AG L++ + ++ ++ + Y Y + +++ GHL
Sbjct: 2 ILVIAEKPNVARKIAGALAEGKPIK----KTLFGVPY---YELFRDGKRLIVAPAVGHLY 54
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L + + + D + + + E KD K L A+R + V+ D D EGE
Sbjct: 55 GLAPKQDFYGYPIFD-IEWVPVYIAEKGKEYAKDYIKLLSVLAKRVKEFVVACDYDTEGE 113
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQEIDL 187
I + ++ V+ + +R +FSAL R++ +A NL +P N A+A AR +D
Sbjct: 114 VIGYTALKYACGVDPGIA-KRMKFSALTKRDLIKAWYNL-EPTINFGMANAGIARHILDW 171
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
G + +R T +K R +VLS G Q PTL F+VER EIQ + +W
Sbjct: 172 YWGVNLSRALTHAIKK------ASGRWIVLSTGRVQGPTLKFLVEREREIQNFVPKPYWI 225
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I + T ++ + ++D A I + P V + + + + PP P
Sbjct: 226 IKLVFEKNGKKFTATYEKDKIWDENEAKRIVLEAKKGPV-RVADIDVKRQKRNPPVPFDL 284
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
L++ A F S + T+ +A+ LY+ GF SYPRTE+ N I+Q P++
Sbjct: 285 GTLQREAYSAFGFSPKKTLDLAQSLYEKGFSSYPRTESQKLPKNLNFRYIIQNIAKMPEY 344
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
PYA LL P G DD AHP I+PT ++D KLY+++VR FLA
Sbjct: 345 RPYAHLLLGMPE---LKPVEGKKDDPAHPAIYPTGEIPRPGDLTKDEAKLYDMIVRRFLA 401
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHGQQFIP 486
+ A+ V I F SG + + +L VY ++ + + +PT++ G++
Sbjct: 402 LFMESAIRESVKVTIRAGPHRFILSGGRTVREGWLSVYGKYVKFEEVTLPTFLVGERVKV 461
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
+ + T+PP S A ++ M+ G+GT AT ++ L R Y + + P
Sbjct: 462 LQIKREKKKTKPPARYSPAAVIKKMEDLGLGTKATRAQILETLYQRGYIEGKKSIKVTP- 520
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV-------LANCLQQMKA 599
+G ++ + E+ L E M + G +K +V L L++ K
Sbjct: 521 -LGMKVIETLEKYVPEIISVELTREFEEKMNLIMQGKLTKEEVIEEAKARLMKILEEFKK 579
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
L+ ++ K++ E G + ++ VV +C C +V + G VG
Sbjct: 580 RELEIGMELAKIVVGESKLKE---GLKKEEKPLIVVGKCPKCGGDLVVKYNKKTGKRFVG 636
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
C +P+C + + E T TC C PV +I+
Sbjct: 637 CSNWPKC-DVTYPILQRGEIIPTGKTC--CNGAPVVIIR 672
>gi|312375379|gb|EFR22766.1| hypothetical protein AND_14242 [Anopheles darlingi]
Length = 752
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 159/270 (58%), Gaps = 10/270 (3%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS+A S+AGILS N R+G + ++E+ RG+ MTSV GH+M
Sbjct: 5 LMVAEKPSLAASLAGILS-NGKCSSRKGSNNACSVHEWTGQFRGETVRFKMTSVCGHIMG 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
L+F +Y W DPA+L+ P K + L +EA+ C +L+LWLDCD+EGEN
Sbjct: 64 LEFVGKYNSWDRVDPAELFACPTEKKEATASLRMPAFLAQEAKGCDYLILWLDCDKEGEN 123
Query: 131 IAFEVIEVCRA----VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
I FEV+ V+ + V RA+FSA+ D++I A+ NL+ PN+ A +VDARQE+D
Sbjct: 124 ICFEVMSAVSGSIHNVHSNRVTFRAKFSAITDKDIKYAMDNLIHPNENEAKSVDARQELD 183
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
LRIG +FTRFQT + + D D +L+ SYGPCQ PTLGF V+R+ EIQ + E FW
Sbjct: 184 LRIGCAFTRFQTKFFQGKYADL---DASLI-SYGPCQTPTLGFCVQRHDEIQTFKPETFW 239
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVI 276
+ + E W R +FD A I
Sbjct: 240 YVQVT-VGENPELKLDWQRVRVFDKEIACI 268
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 111/255 (43%), Gaps = 43/255 (16%)
Query: 389 GHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
G+D HPPI P + ++ + D +++Y+ + RHFL VS+ + I GE+
Sbjct: 309 GNDAGDHPPITPMRLAT-RNELESDCWRIYDYICRHFLGTVSRDLKYRSHTTKFRIGGEL 367
Query: 449 FSTSGRVILAKNYLDVYRFESWGGLVIP-TYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
F+ + V+L + V ++S+ + + ++ + L T PP L+E++L
Sbjct: 368 FTATTSVLLDPGFTKVMTWQSFAKNELGHQFTANEKVKINDIRLVESQTGPPDYLTESEL 427
Query: 508 LSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPN 567
+S M+K GIGTDA++ + EL P
Sbjct: 428 ISLMEKHGIGTDASI-----------------------------------PIDPELVLPT 452
Query: 568 LRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGED 627
+RS +E + +S G+ VL + ++ + F L V+ + M + FE +
Sbjct: 453 MRSAVEQQLNLISQGSADFRLVLKHAVEIFRLKF----LYFVQNISNMDMLFE--ATFSS 506
Query: 628 QQAAGEVVRQCGICQ 642
++G+ + +CG C+
Sbjct: 507 LCSSGKSLSRCGKCR 521
>gi|315054067|ref|XP_003176408.1| DNA topoisomerase 3 [Arthroderma gypseum CBS 118893]
gi|311338254|gb|EFQ97456.1| DNA topoisomerase 3 [Arthroderma gypseum CBS 118893]
Length = 326
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 168/318 (52%), Gaps = 24/318 (7%)
Query: 314 ASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQR 373
S+Y R+ S+ MK AE LY GFISYPRTETD F + +L +V++Q WG YA+
Sbjct: 2 GSKYLRIDSQAIMKAAETLYTKGFISYPRTETDQFDNEIDLKKLVEKQYPSEAWGEYAR- 60
Query: 374 LLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPA 433
G ++ P G ++DKAHPPIHP F S + + + K+YE V R FLAC S+ A
Sbjct: 61 -----GGGFKQPRRGRNNDKAHPPIHPVAFVS-PTVLNANEKKVYEFVTRRFLACCSEDA 114
Query: 434 VGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQFIPTTLTLD 492
G T +EI E F T G V+ +NYLDVY ++ W +PT+V + F P +
Sbjct: 115 KGEATDIEIKYGDEQFHTRGLVVSERNYLDVYVYDKWESSQPLPTFVLNESFEPKEANIT 174
Query: 493 SGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT----------R 542
G T P L+E +L+ MD GIGTDATM +HI K+ R Y
Sbjct: 175 EGKTVAPGYLTEPELIGLMDANGIGTDATMAEHISKIKAREYVATRPRGGGRGSGSRVDE 234
Query: 543 FAPTNIGEALVMGYDDMGY------ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
F PT +G ALV GYD++ L KP LR ME M+++ G K+K +V+ ++
Sbjct: 235 FIPTKLGVALVEGYDNVVAALPDCPSLTKPFLRKEMELRMRDICSGTKTKVEVVRQNVEM 294
Query: 597 MKACFLDARLKKVKLLEA 614
F+ + + L EA
Sbjct: 295 YSEVFMHTQQRIGLLKEA 312
>gi|315230416|ref|YP_004070852.1| DNA topoisomerase I [Thermococcus barophilus MP]
gi|315183444|gb|ADT83629.1| DNA topoisomerase I [Thermococcus barophilus MP]
Length = 719
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 193/729 (26%), Positives = 311/729 (42%), Gaps = 61/729 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKP+VAK +A L++ + +R ++ Y Y Y + +++ GHL
Sbjct: 4 LIIAEKPNVAKKIAYALAERKPIR----KTLYGVPY---YELSRDGKKIIVAPAVGHLYT 56
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPED----KKDIKKTLEEEARRCQWLVLWLDCDR 126
L K + D+ PV +V E KD K L E A+R ++ D D
Sbjct: 57 LAPKT---KTYGYPIFDIEWVPV--YVAEKGKSYAKDYIKALRELAKRADEFIVACDYDT 111
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQE 184
EGE I + ++ V+ +R +FSAL R+I +A NL +P N ADA AR
Sbjct: 112 EGEVIGYTALKYACGVDPKKA-KRMKFSALTKRDILKAWYNL-EPTINFGMADAGIARHI 169
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + +R T +K + ++LS G Q PTL F+VER EI +
Sbjct: 170 LDWYWGVNLSRALTHAIKR------ASGKWMILSTGRVQGPTLKFLVEREKEIANFKPTP 223
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I + + T ++ + + D A I + + P A V KV +++ + PP+P
Sbjct: 224 YWVIKMTLEKNGKQYTATYEKERILDEEEAKRIVQEAKKGP-AFVEKVEVKQQKRNPPHP 282
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L++ A F S + T+ +A+ LY+ G SYPRT + N I+Q
Sbjct: 283 FDLGTLQREAYSAFGYSPKKTLDIAQRLYEMGICSYPRTSSQKLPKNLNYKYIIQSLAKI 342
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P++ P+A LL P G DD AHP I+PT +Q+ +Y+L+VR
Sbjct: 343 PEYKPFAHELLGKPQ---LKPVEGQKDDPAHPAIYPTGELPKPGELTQEEKNIYDLIVRR 399
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHGQQ 483
FLA + PAV V IN F SG + + +L +Y ++ S+ +++P + G+
Sbjct: 400 FLAAFADPAVREIMKVIINSNNHHFILSGARTVKEGWLKIYGKYVSFDEVILPKFREGEP 459
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+ + T+PP S A ++ M+ GIGT AT ++ L R Y R
Sbjct: 460 VKVIQIKREKKKTKPPARYSPASVIKKMEDLGIGTKATRAQILETLYQRGYIEGKKKIRV 519
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
P +G +V + E+ L E M E+ SK V+ Q+ +
Sbjct: 520 TP--LGMKVVEALEKNVPEIVSVELTREFEEKMDEIMKRKLSKDRVIEEARGQLIKILRE 577
Query: 604 ARLKKVKL-LEAMGIFFERWS------------GGEDQQAAGE-------------VVRQ 637
+ K++ + E M ER E+++A +V +
Sbjct: 578 FKAKELDIGKELMEKLLEREKNKKSKKKTAKELTAEEEEAIKNAVENHEKKSNNLIIVGK 637
Query: 638 CGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLI 697
C C +V + G VGC +P C + + + T C C PV I
Sbjct: 638 CPKCGGDLVVRYNRKTGKRFVGCSNWPSC-DVTYPLLQRGKIIPTGKVCPECN-APVVKI 695
Query: 698 QFKFRQHEI 706
+ +++E+
Sbjct: 696 KEGKKEYEV 704
>gi|111120268|gb|ABH06319.1| topoisomerase (DNA) III beta [Bos taurus]
Length = 295
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 174/298 (58%), Gaps = 12/298 (4%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + R+G + ++E++ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIARILSRG-SMSSRKGLNGTCSVHEYSGAFEGQPARFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C +VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDCIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNQARSGEQTVFRARFSSITDTDICAAMARLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
E +W + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVDVDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAK 295
>gi|256827343|ref|YP_003151302.1| topoisomerase IA [Cryptobacterium curtum DSM 15641]
gi|256583486|gb|ACU94620.1| topoisomerase IA [Cryptobacterium curtum DSM 15641]
Length = 834
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 185/744 (24%), Positives = 322/744 (43%), Gaps = 93/744 (12%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYE---FNYSIRGQPCHMLMTSVTGH 67
L V EK A+ ++ +L GR + +K+Y + ++ +G+ + + GH
Sbjct: 3 LIVTEKNDAAEKISELLGA--------GRPKKDKVYSTPVYRFTHQGE--EWVTIGLRGH 52
Query: 68 LMELDFDERY-----RKWHSCD----------PADLY----------------------- 89
++E+DF +R W PADL
Sbjct: 53 ILEVDFAQRLVWSKRAGWRGVGATGEALDAEVPADLPTPPFKKKKPFSEDGVDLKAWKME 112
Query: 90 ------HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVN 143
+AP+ K +P++ KDI ++L+ A++ +V+ D DREGE I + + N
Sbjct: 113 ALPYLTYAPIEK-LPKE-KDIIRSLKNLAKKADSVVIATDFDREGELIGSDALSQIHEAN 170
Query: 144 CHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKN 203
L + RAR+SA +EI A NLV + A A +RQ+IDL GA TR+ T +
Sbjct: 171 PLLPVSRARYSAFTKQEITTAFDNLVQLDGNLAQAGASRQDIDLIWGAVLTRYLTTVKFA 230
Query: 204 FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSW 263
+ + V S G Q PTL +VE+ E A E++W I + + + T
Sbjct: 231 GYGN--------VRSSGRVQTPTLALIVEKERERLAFVPEDYWQIRGAFAVGDESFTAPH 282
Query: 264 MRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSE 323
A + +ATV+ + ++ + P P +T L A+ +
Sbjct: 283 ATARFKVEAEARSAMDRVQNAHSATVSAIEKKTRRVAAPAPFNTTSLMAAAAAEG-IRPA 341
Query: 324 HTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWR 383
M++AE LY GFISYPR + + + +L +V G+P + PY +LL
Sbjct: 342 RCMRMAESLYMDGFISYPRVDNTVYPASLDLAEVVHMLEGNPAYRPYCAQLLSQGP---L 398
Query: 384 NPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEIN 443
+ G ++ HPPI+PT ++ ++ + + +KLY L+ R FLA +S A+ T V ++
Sbjct: 399 HATRGKKEETDHPPIYPTNVATPDTLPAAE-FKLYNLIARRFLATLSDAALIEGTKVSLD 457
Query: 444 IAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLS 503
+AGE F+ G V+ + +Y + +PT G+Q TL+ T PP S
Sbjct: 458 VAGEPFTAKGDVLKEAGFRAIYPYGLKKDEQLPTLNQGEQISFEGATLEQKQTEPPARYS 517
Query: 504 EADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK-DANTRFAPTNIGEALVMGYDDMGYE 562
+ L+ M+K G+GT +T H +++R Y +K N P+ +G A+
Sbjct: 518 QGRLIQEMEKRGLGTKSTRHS----IIERLYTVKYIQNDPIEPSALGMAVCDALGQWAPH 573
Query: 563 LWKPNLRSMMESDMKEVSVGNKSKADVLANC--LQQMKACFLDARLKKVKLLEAMGIFFE 620
+ ++ + ++ +M ++ G K++ DV+ + L + L ++VK A + +
Sbjct: 574 ITTADMTAELDREMDAIAAGRKTREDVVTHSRDLLSEQLSELIPHSEQVKDALADAVAAD 633
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ G +C C + + + ++ +GC +P C LP EA
Sbjct: 634 AYVG------------KCPRCGKDLQLRVSQKTRSMFIGCAGWPDCEVTYPLPKGRIEA- 680
Query: 681 VTTNTCNSCTPGPVYLIQFKFRQH 704
T C C V + F+ + +
Sbjct: 681 -TDTPCPVCGMPQVKVSPFRAKPY 703
>gi|139439563|ref|ZP_01772995.1| Hypothetical protein COLAER_02022 [Collinsella aerofaciens ATCC
25986]
gi|133775116|gb|EBA38936.1| DNA topoisomerase [Collinsella aerofaciens ATCC 25986]
Length = 785
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 178/632 (28%), Positives = 282/632 (44%), Gaps = 48/632 (7%)
Query: 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV 147
L APV K E K++ ++L+ A++ +++ D DREGE I + + R V L
Sbjct: 40 LTWAPVIKLPAE--KELIRSLKNLAKKSDSVIIATDFDREGELIGSDALNKVREVAPDLP 97
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML-LKNFHI 206
+ RA++S+ EI QA NLV +Q ADA ++RQ IDL GA TR+ T+ F
Sbjct: 98 VARAQYSSFTKAEITQAFDNLVSLDQNLADAGESRQHIDLIWGAVLTRYLTLAKFGGF-- 155
Query: 207 DSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN----CSHKSEEGTATFS 262
V S G Q PTL VVER E A E++W I +E+ +
Sbjct: 156 -------GNVRSAGRVQTPTLALVVERERERMAFVPEDYWQIRGMGAAQGAAEDDRFKIA 208
Query: 263 WMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSS 322
D +A Y TATV V ++ + + PP P +T L+ A+ +S
Sbjct: 209 HKTARFTDKDAAEAAYGHVDGVATATVAAVTKRSRKQQPPTPFATTSLQAAAAAEG-ISP 267
Query: 323 EHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG-HPDWGPYAQRLLDHAAGL 381
TM++AE LY AG ISYPR + + + +L +V + +P P +++L AG
Sbjct: 268 ARTMRIAESLYMAGLISYPRVDNTVYPATLDLGAVVSDLAKINPALAPVCKKVL---AGP 324
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVE 441
+ P G + HPPI+PT S KLY+L+ R FLA + PA T +E
Sbjct: 325 MK-PTRGKVETTDHPPIYPTG-EGDPSALDGGQRKLYDLIARRFLATLMGPATIENTKLE 382
Query: 442 INIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
+++ GE F SG V++ + + Y + +P G + L++ T PP
Sbjct: 383 LDVNGEPFVASGDVLVTPGFREAYPYGLKRDEQMPPLEQGDAVDVFDIKLEAKQTEPPAR 442
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD-ANTRFAPTNIGEALVMGYDDMG 560
S+ L+ M+K G+GT +T +++R YA++ N P+ +G A++
Sbjct: 443 YSQGKLVQEMEKRGLGTKSTRA----SIIERLYAVRYLKNDPVEPSQLGIAIIDALSQFA 498
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
+ P++ S ++ DM V G ++ V+ + + + A LD LK + E
Sbjct: 499 PRITSPDMTSELDGDMTRVERGEDTEEHVVTHS-RALLAGVLDELLKHTQ---------E 548
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVS--- 677
D A V C C + ++ ++ +GC+ +P C +P V
Sbjct: 549 LGDAISDAVTADARVGACPKCGKDLVMKTSAKTRGSFIGCMGWPDCDVTYPVPSGVKVSP 608
Query: 678 ---EAAVTTNTCNSCTPGPVYLIQFKFRQHEI 706
EAAV C C + F+ + EI
Sbjct: 609 LEGEAAV----CPECGAPRIKCQPFRQKAFEI 636
>gi|15679619|ref|NP_276736.1| DNA topoisomerase I [Methanothermobacter thermautotrophicus str.
Delta H]
gi|14423958|sp|O27661.1|TOP1_METTH RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|2622750|gb|AAB86097.1| DNA topoisomerase I [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 718
Score = 205 bits (522), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 178/682 (26%), Positives = 297/682 (43%), Gaps = 53/682 (7%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+ EKP ++ +AG L + ++ + G+ Y + E + + + S GHL L
Sbjct: 13 ICEKPKSSEKIAGALFPD-AMKKKHGKVSYWEHVEGDKRV-------TIVSAVGHLYSL- 63
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKK----DIKKTLEEEARRCQWLVLWLDCDREG 128
R R+ + DL AP+ H + KK D + + A + D D EG
Sbjct: 64 ---RPRQSNEEHFFDLEWAPI--HEIDKKKGYVKDYLNVIRKFAAGADRYIHACDYDIEG 118
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
I F ++ R +FS L EI +A +N ++ + D+ AR +D
Sbjct: 119 TLIGFNALKYGCGEEALRKTSRMKFSTLTREEIQRAYKNPIEVDYGQVDSGAARHILDFI 178
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
G + +R L+K+ +R + LS G Q PTL +VER EI+ + +W I
Sbjct: 179 FGVNISR---SLMKSV---KAATNRFIKLSAGRVQTPTLAILVEREKEIRDFKPVPYWII 232
Query: 249 NCSHKSEEGTATFSW-MRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
++E G + RG +F I E C Q A V VR ++ ++ PP P
Sbjct: 233 ----RAELGEGIIAESKRGKIFKRELVDSILEKC-QGSDAEVKDVRVRDTIRKPPVPFDL 287
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
L+ A R F S + T +A++LY G+ SYPRT + I++ +P +
Sbjct: 288 GTLQSEAYRVFGFSPKKTQTIAQNLYTEGYTSYPRTSSQKLPESIGYEKILKNLAKNPRF 347
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G + +RL P G +D AHP IHPT E S+D K+Y+L+V F++
Sbjct: 348 GVHIERLRGPL-----KPHEGKKEDDAHPAIHPTGLLPSE--LSKDEKKVYDLIVHRFIS 400
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
+ A+ VE+ I E FS S + + +++ Y + P G
Sbjct: 401 VFGEDAILQTMKVELEIGEEEFSFSRKRVSKAGWMESYPYTKMEDEEFPEISGGDSLAVR 460
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+++ D T+PP +EA L+ +++ G+GT +T D I KL DR Y I+ R +P
Sbjct: 461 SVSADERETKPPARYNEASLIRELERRGLGTKSTRADIIAKLYDRKY-IEGKKIRVSP-- 517
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+GE ++ ++ L E +++++ G SK V+ + ++++ D
Sbjct: 518 LGENIIDTLTRYCEKIISEELTRQFERELEDIMRGKISKDRVIDEAITEVRSILSDIE-- 575
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
+ L +G E + +D + GE C C ++ R+ + VGC ++P CR
Sbjct: 576 --ENLRDIGK--ELYRAYQDSRVVGE----CPACGGKLVIKYSPRNRSTFVGCSSYPDCR 627
Query: 668 NAVWLPGSVSEAAVTTNTCNSC 689
LP A+V + C C
Sbjct: 628 TVYSLPRG---ASVLKSLCEKC 646
>gi|284161403|ref|YP_003400026.1| DNA topoisomerase [Archaeoglobus profundus DSM 5631]
gi|284011400|gb|ADB57353.1| DNA topoisomerase [Archaeoglobus profundus DSM 5631]
Length = 648
Score = 205 bits (522), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 183/687 (26%), Positives = 297/687 (43%), Gaps = 75/687 (10%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKI-YEFNYSIRGQPCHMLMTSVTGHLM 69
L VAEK A+ +A IL K+ + + N++ Y F+ S + + + GH++
Sbjct: 3 LIVAEKDKSARRIARILFKDVKV------LKKNQVNYYFSPSNKA-----FVLGLKGHIV 51
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
E DF E W L A V +K++ KTL E A+ + + + D DREGE
Sbjct: 52 EYDFPEELNNWRRTPLEALLKAKFVVKV--KEKNVVKTLLELAKDAERVTIATDYDREGE 109
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
I +++ + VN + + R RFSAL ++ +A +N + A + + R ++DL
Sbjct: 110 FIGLTAVKLIQKVNPGVKIERVRFSALTPVDVRRAFENPTSLDLNLAKSAEVRHKVDLLW 169
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA TR ++ D LS G Q PTL +VER +I++ +S+ ++
Sbjct: 170 GAILTRLLSLSANRLGRD--------FLSVGRVQSPTLRLIVEREEQIKSFKSKYYYNAF 221
Query: 250 CS----------HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
K EE A + T V+ ++ V E
Sbjct: 222 VKVRGIYAKRKFEKEEEAKAVLESIN------TLKVLSFKKSVVEEKK------------ 263
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
P P +T E K AS++ M + M +AE+LY G+ISYPRT+ + NL +V
Sbjct: 264 --PIPFNTTEFLKEASKF--MKPDKAMAIAENLYMEGYISYPRTDNTVYPKTLNLKKLV- 318
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
E D+ +A+ +L H P G + HPPIHPT +S + S+D + +YE
Sbjct: 319 EMFLSSDFKDHAEFVLKHGI----EPSRGRKETSDHPPIHPTAVASKDE-LSKDEWTIYE 373
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVV+ FLA ++ A VE + F G+ ++ + +Y + IP +
Sbjct: 374 LVVKRFLATLAPKAKWEVKRVEFE---QGFKAMGKKLIFAGWRLIYDYSKPEESYIPDFK 430
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ + + T+PP + L+ M+ G+GT +T H+ IKKL DR Y +
Sbjct: 431 VGEVLVVEEKKIKKEKTKPPSRYTTGTLIKVMESLGLGTKSTRHEIIKKLYDRKYIYGNP 490
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
PTN+ A++ + + P++ + +E DM ++ G + DVL +
Sbjct: 491 ---IRPTNLAFAVINALKETAEVVTLPDMTAKLERDMTAIAEGRIDEKDVLKESV----- 542
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
FL LK V I E +++ + G C E VL R +G
Sbjct: 543 VFLSRILKSVDRERLGSIIKEGIEKDREEEMEKNAI---GSCPECGGVLLVKRANKRFIG 599
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTC 686
C +P+C+ + LP T+ C
Sbjct: 600 CSNYPKCKFSRPLPQK-GRLVTTSKVC 625
>gi|341886419|gb|EGT42354.1| hypothetical protein CAEBREN_30446, partial [Caenorhabditis
brenneri]
Length = 671
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 229/463 (49%), Gaps = 25/463 (5%)
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAV 275
V+SYGPCQ PTLGF V R+ +I + E +W + + + T + W RG +FD A
Sbjct: 13 VISYGPCQTPTLGFCVTRHDQIVQFKPEAYWVLKTTFSCDSQTFSPEWQRGRIFDAEIAR 72
Query: 276 IIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA 335
+ + + + VT V ++E K P L+T+EL + AS MS TM VAE LY
Sbjct: 73 LFVDRIKKSHSGVVTDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMHVAESLYTQ 132
Query: 336 GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395
G+ISYPRTET ++ + +L+G ++ G WG ++L A G+ R P S G D H
Sbjct: 133 GYISYPRTETTAYPANFDLNGTLKILSGDRKWGSVVSQVL--AEGIKR-PKS-GVDKGDH 188
Query: 396 PPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRV 455
PPI P + ++G S D ++YE V +HF+A + + V T V++ E F+ G+
Sbjct: 189 PPITPMRANTG--GLSGDMARIYEYVSQHFVATLMKQCVYEVTTVKMACGDEQFTIQGKN 246
Query: 456 ILAKNYLDVYRFESW-GGLVIPTYVH--GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD 512
++ + V + S +P + G + + + T PP L+EA+L++ M+
Sbjct: 247 VIDPGFTAVMPWLSVEDECSVPKSLQQVGAKIELQDAQILARETTPPGYLTEAELITLME 306
Query: 513 KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMM 572
K GIGTDA++ HI + R Y ++ R PT +G+ LV GY + EL P +R+ +
Sbjct: 307 KHGIGTDASIPVHINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAEL 366
Query: 573 ESDMKEVSVGNKSKADVLANCLQ--QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQA 630
E + V+ G DV + L+ +MK F V + A+ FE +
Sbjct: 367 EEQLNLVASGKADYHDVKNHALKMFEMKFQFF------VNNIPAVDTLFE--ASFTTLSD 418
Query: 631 AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
G+ +CG C+ M L +++ L P C+ +P
Sbjct: 419 TGKPFSRCGKCRRY-MKLVQTKPQRLFC-----PTCQETYSVP 455
>gi|304313985|ref|YP_003849132.1| DNA topoisomerase I [Methanothermobacter marburgensis str. Marburg]
gi|302587444|gb|ADL57819.1| DNA topoisomerase I [Methanothermobacter marburgensis str. Marburg]
Length = 711
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 181/687 (26%), Positives = 289/687 (42%), Gaps = 63/687 (9%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+ EKP ++ +AG L + R +Y K+ + YS + + + S GHL L
Sbjct: 6 ICEKPKSSEKIAGALFPDAE------RKKYRKVSYWEYSEGNK--RVTIVSAVGHLYSLR 57
Query: 73 ---------FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
FD + H D Y KD +++ A + D
Sbjct: 58 PSKPGEEHFFDLEWAPLHEIDKKKNYV-----------KDYLNVIKKFAAGADRYIHACD 106
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
D EG I F I + R +FS L EI A + ++ + D+ AR
Sbjct: 107 YDIEGTLIGFNAIRYGCGEDALQKTVRMKFSTLTREEIQSAYEKPIELDCGQVDSGAARH 166
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+D G + +R +K +R + LS G Q PTL +VER EI+ E
Sbjct: 167 ILDFIFGVNISRSLMKSVKE------ATNRFIKLSAGRVQTPTLAILVEREKEIREFEPV 220
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+W I +S G S RG +F + E C A+V V+ ++ ++ PP
Sbjct: 221 PYWIIQAELES--GIVAES-RRGKIFQRPLVDEVLERC-SGSDASVRGVKVRDTVRKPPV 276
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P L+ A R F S + T +A++LY G+ SYPRT + I+
Sbjct: 277 PFDLGSLQSEAYRVFGFSPKKTQTIAQNLYTEGYTSYPRTSSQKLPESIGYRKILDRLSE 336
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
P +G + + L + P G D AHP IHPT S S D K+YEL+V
Sbjct: 337 DPRFGAHIEGLSEPL-----KPHEGKKVDDAHPAIHPTGLLP--SDLSSDERKIYELIVH 389
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQ 483
F++ + AV V++ I GE FS S + + + ++D Y + V P G
Sbjct: 390 RFISVFGEDAVLQTMRVDLEIGGEEFSFSRKRVSKRGWMDSYPYTRIEDEVFPDISEGDV 449
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
++ T+PP +EA L+ ++K G+GT +T D I KL DR Y I+ R
Sbjct: 450 MGVVGVSTLEKETKPPARYNEASLIRELEKRGLGTKSTRADIIAKLYDRKY-IEGKKIRV 508
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
+P +GE ++ ++ L E +++E+ G S+ V+ ++++K+ D
Sbjct: 509 SP--LGENIIDTLTKYCEKITSEELTRQFERELEEIMEGKISRDRVVDEAIEEVKSILSD 566
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKS-RDGNLMVGCLA 662
+ ++ +G + + +D + GE C C N+V+K S R+ + VGC
Sbjct: 567 IE----RNMKDIG--RDLYKAYQDSRVVGE----CPACGR-NLVIKYSPRNKSTFVGCSG 615
Query: 663 FPQCRNAVWLPGSVSEAAVTTNTCNSC 689
+P CR LP A+V + C C
Sbjct: 616 YPDCRTVYSLPRG---ASVLKSRCEKC 639
>gi|55378414|ref|YP_136265.1| DNA topoisomerase I [Haloarcula marismortui ATCC 43049]
gi|55231139|gb|AAV46558.1| DNA topoisomerase I [Haloarcula marismortui ATCC 43049]
Length = 1364
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 148/517 (28%), Positives = 240/517 (46%), Gaps = 37/517 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS EG + N+ N G + + ++GH++
Sbjct: 3 LIITEKDNAARRIAEILS--------EGGASANRRNGVNVYRWG---NTRVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF E Y W +P +L A V K +++I TL++ AR + D DREGE
Sbjct: 52 VDFPEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ +RE+ A N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDAPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWEIFA 220
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIY---------EMCVQEPTATVTKVRQQEKLKYP 301
+ + + F + D A ++ ATVT VR++ + P
Sbjct: 221 DLQ--KNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTNVDAATVTSVRRRTRTDSP 278
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T AS S++ M +AE+LY G+I+YPRT+ + ++ E
Sbjct: 279 PTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLEEDALLDEF 337
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G +G A+ LL+ G + HPPIHPT ++ S D +++YELV
Sbjct: 338 VGAGHFGEDAEALLEQDD---ITATEGDEETTDHPPIHPTGEIPPKADLSDDEWEIYELV 394
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V++ A V + G +G+ ++ Y +VY + S +P G
Sbjct: 395 VRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVPDVEEG 454
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
++ + + +++ T+PP ++ L+ M+ G+GT
Sbjct: 455 EELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGT 491
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
++T H+ I+KL DR Y D PT + A+V ++ + + + +E+DM
Sbjct: 1029 NSTRHNSIEKLYDRGYIEGDPPR---PTTLAMAVVEAAEEFADHVVSDEMTAQLEADMTA 1085
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQC 638
++ G + DV + +K F + R + ++ E + ++ A + + C
Sbjct: 1086 IANGEATLDDVADESREMLKRVFDELRDSREEIGEHL----------QESLKADKTLGPC 1135
Query: 639 GICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
C E +M++++SR G+ VGC FP+CRN + LP S E V + C
Sbjct: 1136 PKCGE-DMLVRRSRQGSYFVGCDGFPECRNTLPLP-STGEPQVLEDHC 1181
>gi|448637090|ref|ZP_21675466.1| DNA topoisomerase I [Haloarcula sinaiiensis ATCC 33800]
gi|445764637|gb|EMA15781.1| DNA topoisomerase I [Haloarcula sinaiiensis ATCC 33800]
Length = 1364
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 148/517 (28%), Positives = 239/517 (46%), Gaps = 37/517 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS EG + N+ N G + ++GH++
Sbjct: 3 LIITEKDNAARRIAEILS--------EGGASANRRNGVNVYRWGD---TRVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF E Y W +P +L A V K +++I TL++ AR + D DREGE
Sbjct: 52 VDFPEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ +RE+ A N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDAPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R EIQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDREREIQAFDPEDYWEIFA 220
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIY---------EMCVQEPTATVTKVRQQEKLKYP 301
+ + + F + D A ++ ATVT VR++ + P
Sbjct: 221 DLQ--KNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTNVDAATVTSVRRRTRTDSP 278
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T AS S++ M +AE+LY G+I+YPRT+ + ++ E
Sbjct: 279 PTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLEEDALLDEF 337
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G +G A+ LL+ G + HPPIHPT ++ S D +++YELV
Sbjct: 338 VGAGHFGEDAEALLEQDD---ITATEGDEETTDHPPIHPTGEIPPKADLSDDEWEIYELV 394
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V++ A V + G +G+ ++ Y +VY + S +P G
Sbjct: 395 VRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVPDVEEG 454
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
++ + + +++ T+PP ++ L+ M+ G+GT
Sbjct: 455 EELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGT 491
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
++T H+ I+KL DR Y D PT + A+V ++ + + + +E+DM
Sbjct: 1029 NSTRHNSIEKLYDRGYIEGDPPR---PTTLAMAVVEAAEEFADHVVSDEMTAQLEADMTA 1085
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQC 638
++ G + DV + +K F + R + ++ E + ++ A + + C
Sbjct: 1086 IANGEATLDDVADESREMLKRVFDELRDSREEIGEHL----------QESLKADKTLGPC 1135
Query: 639 GICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
C E +M++++SR G+ VGC FP+CRN + LP S E V + C
Sbjct: 1136 PKCGE-DMLVRRSRQGSYFVGCDGFPECRNTLPLP-STGEPQVLEDHC 1181
>gi|448648053|ref|ZP_21679531.1| DNA topoisomerase I [Haloarcula californiae ATCC 33799]
gi|445775923|gb|EMA26918.1| DNA topoisomerase I [Haloarcula californiae ATCC 33799]
Length = 1364
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 147/517 (28%), Positives = 240/517 (46%), Gaps = 37/517 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A ILS EG + N+ N G + + ++GH++
Sbjct: 3 LIITEKDNAARRIAEILS--------EGGASANRRNGVNVYRWG---NTRVVGLSGHVVG 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
+DF E Y W +P +L A V K +++I TL++ AR + D DREGE
Sbjct: 52 VDFPEEYNDWRDVEPVELIDADVTKEPT--QENIVTTLKQLAREADEATIATDYDREGEL 109
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E E+ R + R RFS++ +RE+ A N D + A A +ARQ IDL G
Sbjct: 110 IGKEAYELIRE-ETDAPVDRVRFSSITEREVRDAFANPDDIDFDLAAAGEARQIIDLVWG 168
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TRF ++ + D +S G Q PTL +V+R +IQA + E++W I
Sbjct: 169 AALTRFLSLSARQLGDD--------FISVGRVQSPTLKLIVDRERDIQAFDPEDYWEIFA 220
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIY---------EMCVQEPTATVTKVRQQEKLKYP 301
+ + + F + D A ++ ATVT VR++ + P
Sbjct: 221 DLQ--KNGSGFEAQYFYDDDGKEAERVWVEDDADDAYADLTNVDAATVTSVRRRTRTDSP 278
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P P +T AS S++ M +AE+LY G+I+YPRT+ + ++ E
Sbjct: 279 PTPFNTTAFISAASS-LGYSAQQAMSIAEELYTTGYITYPRTDNTVYPDDLEEDALLDEF 337
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+G +G A+ LL+ G + HPPIHPT ++ S D +++YELV
Sbjct: 338 VGAGHFGEDAEALLEQDD---ITATEGDEETTDHPPIHPTGEIPPKADLSDDEWEIYELV 394
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VR F A V++ A V + G +G+ ++ Y +VY + S +P G
Sbjct: 395 VRRFFATVAEAATWEHLRVVADAGGRSLKANGKRLVEPGYHEVYPYSSASENHVPDVEEG 454
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
++ + + +++ T+PP ++ L+ M+ G+GT
Sbjct: 455 EELAISEVRMEAKQTQPPRRYGQSRLIQTMEDKGLGT 491
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
++T H+ I+KL DR Y D PT + A+V ++ + + + +E+DM
Sbjct: 1029 NSTRHNSIEKLYDRGYIEGDPPR---PTTLAMAVVEAAEEFADHVVSDEMTAQLEADMTA 1085
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQC 638
++ G + DV + +K F + R + ++ E + ++ A + + C
Sbjct: 1086 IANGEATLDDVADESREMLKRVFDELRDSREEIGEHL----------QESLKADKTLGPC 1135
Query: 639 GICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTC 686
C E +M++++SR G+ VGC FP+CRN + LP S E V + C
Sbjct: 1136 PKCGE-DMLVRRSRQGSYFVGCDGFPECRNTLPLP-STGEPQVLEDHC 1181
>gi|300521518|gb|ADK25970.1| topoisomerase IA [Candidatus Nitrososphaera gargensis]
Length = 685
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 174/685 (25%), Positives = 282/685 (41%), Gaps = 69/685 (10%)
Query: 11 LNVAEKPSVAKSVAGIL-----SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVT 65
L V EKP A+ +A L SK G+ + + + CH + S
Sbjct: 4 LVVCEKPDAARRIAQALGDPKESKPAGISV--------------FDVANSDCHYKVCSAL 49
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL L + R + DL APV K+ P + IK + E ++ V D D
Sbjct: 50 GHLYGLADSTKNRSVYPV--LDLEWAPVDKN-PRAARAIK-VISELSKNASAFVHACDYD 105
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
+EGE I +++ LR A+FS L D EI ++ +L P+ A+A +R +
Sbjct: 106 QEGEVIGHNILQYACGGKYEKALR-AKFSTLTDEEIRESFASLERPSGGLAEAGRSRHML 164
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
D G + +R LK + + LS G Q PTL F V+R EI+ H + +
Sbjct: 165 DFIYGVNLSRALAQSLK------MASNGYCNLSIGRVQGPTLAFAVDRELEIRLHVPDPY 218
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
WTI + T + + + + A I C+ TV+ V + + PP P
Sbjct: 219 WTIAAQFEKNNQTFSAQYEKPKVGTLAEAKSIVSACIGR-DGTVSDVVDSKAVLGPPTPF 277
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+ +L++ A R F++ +T+ +AE LY ISYPRT + I+
Sbjct: 278 NIGDLQREAYRLFKLGPGYTLAIAEKLYLQALISYPRTSSQKLPPSIGYGKIISSLSRIG 337
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+G LL + P G D AHP I+PT + + + S +K+Y+LVV+ F
Sbjct: 338 GYGQLTSMLLSKGRLV---PNEGRMTDPAHPAIYPTGVAP-QQKLSSLEFKVYDLVVKRF 393
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY----RFESWGGLVIPTYVHG 481
LA PA+ T V I++ F GR + + ++ Y R E +P G
Sbjct: 394 LATFGDPAISRHTDVSIDVNSHTFKAQGRSPVYEGWMVFYKPHVRLEQHE---LPELRKG 450
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ ++ T+PP ++A LL+ M++ IGT AT D I L R Y
Sbjct: 451 DLVKNLGIDMEEKFTQPPYRYNQASLLAKMEQEQIGTKATRADIIATLFKRNYIASSVRG 510
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T++G A++ + +L ME +++V G+ V+ +
Sbjct: 511 GIEVTDLGFAVIDSMRTFVPAIISTSLTRSMEEQLEKVEQGSAESVLVIEQAVD------ 564
Query: 602 LDARLKKVKLLEAMGIFFER-----------WSGGEDQQAAGEVVRQCGICQESNMVLKK 650
KL+E++ F E+ S + A ++ C +C++ + + K
Sbjct: 565 --------KLIESLSAFIEKEVDIGARIGNAASSSANGAQAATMIGSCPVCKKGQLRMIK 616
Query: 651 S-RDGNLMVGCLAFP-QCRNAVWLP 673
S + VGC + C+ LP
Sbjct: 617 SYKTKKRFVGCSNYSGGCKATAPLP 641
>gi|408402639|ref|YP_006860622.1| DNA topoisomerase IA [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408363235|gb|AFU56965.1| DNA topoisomerase IA [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 685
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 174/685 (25%), Positives = 282/685 (41%), Gaps = 69/685 (10%)
Query: 11 LNVAEKPSVAKSVAGIL-----SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVT 65
L V EKP A+ +A L SK G+ + + + CH + S
Sbjct: 4 LVVCEKPDAARRIAQALGDPKESKPAGISV--------------FDVANSDCHYKVCSAL 49
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL L + R + DL APV K+ P + IK + E ++ V D D
Sbjct: 50 GHLYGLADSTKNRSVYPV--LDLEWAPVDKN-PRAARAIK-VISELSKNASAFVHACDYD 105
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
+EGE I +++ LR A+FS L D EI ++ +L P+ A+A +R +
Sbjct: 106 QEGEVIGHNILQYACGGKYEKALR-AKFSTLTDEEIRESFASLERPSGGLAEAGRSRHML 164
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
D G + +R LK + + LS G Q PTL F V+R EI+ H + +
Sbjct: 165 DFIYGVNLSRALAQSLK------MASNGYCNLSIGRVQGPTLAFAVDRELEIRLHVPDPY 218
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
WTI + T + + + + A I C+ TV+ V + + PP P
Sbjct: 219 WTIAAQFEKNNQTFSAQYEKPKVGTLAEAKSIVSACIGR-DGTVSDVVDSKAVLGPPTPF 277
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+ +L++ A R F++ +T+ +AE LY ISYPRT + I+
Sbjct: 278 NIGDLQREAYRLFKLGPGYTLAIAEKLYLQALISYPRTSSQKLPPSIGYGKIISSLSRIG 337
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
+G LL + P G D AHP I+PT + + + S +K+Y+LVV+ F
Sbjct: 338 GYGQLTSMLLSKGRLV---PNEGRMTDPAHPAIYPTGVAP-QQKLSSLEFKVYDLVVKRF 393
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY----RFESWGGLVIPTYVHG 481
LA PA+ T V I++ F GR + + ++ Y R E +P G
Sbjct: 394 LATFGDPAISRHTDVSIDVNSHTFKAQGRSPVYEGWMVFYKPHVRLEQHE---LPELRKG 450
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ ++ T+PP ++A LL+ M++ IGT AT D I L R Y
Sbjct: 451 DLVKNLGIDMEEKFTQPPYRYNQASLLAKMEQEQIGTKATRADIIATLFKRNYIASSVRG 510
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T++G A++ + +L ME +++V G+ V+ +
Sbjct: 511 GIEVTDLGFAVIDSMRTFVPAIISTSLTRSMEEQLEKVEQGSAESVLVIEQAVD------ 564
Query: 602 LDARLKKVKLLEAMGIFFER-----------WSGGEDQQAAGEVVRQCGICQESNMVLKK 650
KL+E++ F E+ S + A ++ C +C++ + + K
Sbjct: 565 --------KLIESLSAFIEKEVDIGARIGNAASSSANGAQAATMIGSCPVCKKGQLRMIK 616
Query: 651 S-RDGNLMVGCLAFP-QCRNAVWLP 673
S + VGC + C+ LP
Sbjct: 617 SYKTKKRFVGCSNYSGGCKATAPLP 641
>gi|70930089|ref|XP_737007.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56512031|emb|CAH87300.1| hypothetical protein PC302419.00.0 [Plasmodium chabaudi chabaudi]
Length = 271
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 147/248 (59%), Gaps = 6/248 (2%)
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
I+ E + +G YA +L ++ + P G +DKAHPPIHP K + + +K
Sbjct: 2 IIHELKKNNIFGSYAAKLAENGSC---KPRKGKLNDKAHPPIHPVKNMNKANNVDFKEWK 58
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 476
+YE + RHFLA S A+G +T V NI E F G I KNYL++Y +E W ++P
Sbjct: 59 IYEFICRHFLAVCSDDAIGFDTKVVANIGAEQFYCKGLKIKNKNYLEIYIYEKWNDKILP 118
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
+ +F P +L ++ G+T+PP LSE+DLLS MDK GIGTDATMH+HI+ + R Y
Sbjct: 119 PFQINDEFYPYSLIVEEGITQPPKYLSESDLLSLMDKYGIGTDATMHEHIENIQKRNYVY 178
Query: 537 KDANTRFAPTNIGEALVMGY---DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
K++ F PT +G AL++ Y D+G +L +P+LR+ ME DM V+ G K K +++ N
Sbjct: 179 KNSKNLFIPTKLGIALILSYKKFKDIGVDLTEPSLRAKMERDMFLVASGEKGKNEIIRNY 238
Query: 594 LQQMKACF 601
+ MK +
Sbjct: 239 IDIMKYIY 246
>gi|424812730|ref|ZP_18237970.1| DNA topoisomerase I, archaeal [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756952|gb|EGQ40535.1| DNA topoisomerase I, archaeal [Candidatus Nanosalinarum sp.
J07AB56]
Length = 678
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 177/696 (25%), Positives = 300/696 (43%), Gaps = 58/696 (8%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
VAEKP VA +A L ++ + R + NY I ++++ GH+ L+
Sbjct: 6 VAEKPKVASRIANALGSHETIENRGVK---------NYRIETDEGELVVSPAVGHIFNLE 56
Query: 73 F---DERY----RKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
D Y +W D VRK+ + LE++ V D D
Sbjct: 57 DAGDDWEYPAFETEWLPIFETDDSAGYVRKYY--------RNLEDQLEDADEYVNACDLD 108
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
EG I F V+ V +R +FS L ++ +A +L + ++ +A AR +
Sbjct: 109 LEGSVIGFTVLNFIADAPEERV-KRMKFSTLTSSDLQEAFDDLDEFDEGMTEAGLARHVL 167
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
D G + +R L+K +DR LS G Q P L + +R +IQA + +++
Sbjct: 168 DFYYGINLSR---ALMKAVQ----DNDRYETLSTGRVQGPALKLLADRERDIQAFDPDDY 220
Query: 246 WTINCSHKSEEGTATFSWMRG---HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
W I E W G ++ A +E + A V++V +++ PP
Sbjct: 221 WEIYAQISGLEA----QWRNGDDDRIWSEDEAEATHETVREAGEADVSEVSKRDYKHRPP 276
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P + L+K AS +S + T VA++LY+ G ISYPRTE+ I+++
Sbjct: 277 IPFNLTGLQKEASSQIGLSPKRTQSVAQNLYEQGLISYPRTESQKLPPKIGYESILKQLK 336
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT-KFSSGESRWSQDHYKLYELV 421
D A+ +LD L+ GS +D AHP I+PT K SG KLYELV
Sbjct: 337 AQEDLEDGAETVLDK-ENLYTTQGS--KEDDAHPAIYPTGKTPSG---LDGKDRKLYELV 390
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPTYVH 480
+ FLA A ++ E FS + L +N+ D+Y F + P +
Sbjct: 391 AKRFLAVFGDAAQRRSVETSFSVEEERFSAKAKFTLERNWYDLYEPFVNVSDDPRPDFSE 450
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G + L++ T+PP S++ ++S M+ +GT AT D I+ L DR +
Sbjct: 451 GDTVQVEEVDLEAKETQPPNRYSQSTIVSEMEDRDLGTKATRADTIQSLYDRDFI---DG 507
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R T +G A+V ++ E+ +L E M+++ G +++ +VL +++
Sbjct: 508 GRIEVTRLGLAIVEALEEYCPEILSEDLTRRFEELMEDIRRGEETRENVLEEAREELGDI 567
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
+ + ++ E + ++++ + C C++ + + K+ +G VGC
Sbjct: 568 LDEFEDHQGEIGEFL------VEAIDERREERRRLGPCQECEDGMLRIVKTSNGRF-VGC 620
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYL 696
++P+C N LPGS S N C+ C +Y+
Sbjct: 621 SSYPECENTYPLPGSGS-IESRENPCDECGKPMIYV 655
>gi|255514071|gb|EET90334.1| DNA topoisomerase I [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 727
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 181/701 (25%), Positives = 305/701 (43%), Gaps = 55/701 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA +A L Q +R GR Y Y++ + + + GH
Sbjct: 1 MKTLIIAEKPSVALRIAIALGNGQHKSVRNGRITY-------YTMPHGDGEIYVAAAVGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAP--VRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
L + + R + + + AP + E K+ TL++ A+ C + D D
Sbjct: 54 LFTIRQKGKERAYPITE---IEWAPSYLTNKRSEYTKEYLFTLKKLAQECSTFINACDYD 110
Query: 126 REGENIAFEVIEVCRAVNCHL---VLRRARFSALIDREIHQAVQNLVDP--NQWFADAVD 180
EG I +I+ + V +R +FS +++ + +L+ P N ++A +
Sbjct: 111 IEGTVIGTNIIKELSGLQAEAIGSVSKRMKFSTTTPKDLLDSFGSLLPPDINNFYAG--E 168
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
AR +D G +F+R T L + + LS G Q P LG + +R EI +
Sbjct: 169 ARHMLDWLWGINFSRALTSALS-------SSGQYKQLSIGRVQGPALGLLAKREKEIASF 221
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ-EPTATVTKVRQQEKLK 299
+ E +W + + G F RG++F A + A V++ E+L+
Sbjct: 222 KPEPYWNV----LAYSGEFEFINSRGNIFAKQEAESAFSAANSGRDNAVVSEATSAEQLR 277
Query: 300 --YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
YPP+ L++++LE ASR F T+ +A+ LY+ FISYPRT + L I
Sbjct: 278 RPYPPFDLTSLQLE--ASRVFGFDPSATLAMAQSLYERSFISYPRTSSQKLPRTLGLPRI 335
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ + +P + A + A+ P G +D+AHP I PT + S++ KL
Sbjct: 336 IADLGKNPAYSTIAAEI---ASKGRFTPAEGPKEDEAHPAIFPTGVTPKGITGSEE--KL 390
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
Y+L+ R FL+C + A +EI+I GE F G + +LD Y++ +P
Sbjct: 391 YDLIARRFLSCFGEYAKVNNFSLEISIGGETFEGKGSKVTYPGWLDYYKYAKIKERDLPN 450
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
GQ+ T + + T PP ++A L+S ++K +GT AT I L R Y I+
Sbjct: 451 LEKGQRVEITDIKMPELQTAPPKRFTKAGLISELEKHNLGTKATRAAIIDTLFKRNY-IE 509
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
++ R T G + + + + +E DM +S G +++VL + +
Sbjct: 510 GSSIRV--TEFGMTVYDALEKNCSMIVDEDTTITLEKDMDLISKGKMPESEVLKKGKEVL 567
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
K K+ E M F+ + V+ +C ++V+K+S G
Sbjct: 568 LTAIETFNSNKEKISEEMKESFK----------SANVLGKCP-KDGGDLVIKRSFRGKQF 616
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
V C +P+C N LP + ++ T N C C V +I+
Sbjct: 617 VACSNYPKCTNTYPLPQN-AKIVPTGNACEFCHTPIVKIIR 656
>gi|357489373|ref|XP_003614974.1| DNA topoisomerase [Medicago truncatula]
gi|355516309|gb|AES97932.1| DNA topoisomerase [Medicago truncatula]
Length = 302
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 167/305 (54%), Gaps = 16/305 (5%)
Query: 54 GQPCHMLMTSVTGHLMELDFDERYRK-WHSCDPADLY--HAPVRKHVPEDKKDIKKTLEE 110
+ C M+ S GH+ E F+++ W+ + L V + V DK D++ L +
Sbjct: 3 NEACKMIFASTNGHIKETKFEKQSDNVWNEGNTKKLLSPETVVVRSVLGDKIDVENKLRD 62
Query: 111 EARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQ-NLV 169
EA++C+WLVLW D D EGE IA+EV E+C N ++++RARFS+L + ++ +L
Sbjct: 63 EAKKCKWLVLWFDNDPEGEYIAYEVHEICVQQNYEIIVKRARFSSLNPTAVDATIKTSLD 122
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
D N DAV R+E+D + G +TRFQ+ L + + + NL LSYG CQ LG
Sbjct: 123 DLNPCLLDAVAYRKEVDFKTGRVWTRFQSFLARK----QIPNATNLTLSYGLCQSALLGI 178
Query: 230 VVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATV 289
VVER+ ++ +++++ N S ++ +D S + AT+
Sbjct: 179 VVERFNQVAKPKAQKY---NISFNDRGYGPKVTFTSPVWYDAKSKASKKLQSCSDEKATI 235
Query: 290 TKV-----RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTE 344
+V + K PP PL+T+ELEK A++YF+M+ + TM AEDLY GFI+YPRTE
Sbjct: 236 VEVFVEITNKFNKFHSPPVPLTTMELEKLAAKYFKMTPKQTMNTAEDLYTQGFINYPRTE 295
Query: 345 TDSFS 349
TD FS
Sbjct: 296 TDGFS 300
>gi|222445728|ref|ZP_03608243.1| hypothetical protein METSMIALI_01370 [Methanobrevibacter smithii
DSM 2375]
gi|261349724|ref|ZP_05975141.1| DNA topoisomerase [Methanobrevibacter smithii DSM 2374]
gi|222435293|gb|EEE42458.1| DNA topoisomerase I [Methanobrevibacter smithii DSM 2375]
gi|288861679|gb|EFC93977.1| DNA topoisomerase [Methanobrevibacter smithii DSM 2374]
Length = 716
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 175/702 (24%), Positives = 295/702 (42%), Gaps = 54/702 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+N + + EKP A+ +A LS + + +Y +++ + + S GH
Sbjct: 1 MNEVIICEKPKSAEKIAKALSSKAKKNVFNKKVKY-------WTLERDGKDITVLSAVGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAP---VRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
L L D K + DL+ AP + K KD + +++ A+ + D
Sbjct: 54 LYSLTPDNPKDKVY----FDLHWAPLFEIDKKYKNYTKDYVRAIKKYAKDADSYIHACDY 109
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
D EG I + ++ + R +FS L ++I +A +N + ++ D+ AR
Sbjct: 110 DIEGTLIGYHALKYGCGEDALKKSSRMKFSTLTKKDIVEAYENRIPIDRHQVDSGVARHI 169
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + ++ L+K+ S R L LS G Q PTL +V+R EI+ E
Sbjct: 170 LDFYFGVNISK---ALMKSV---SAAKKRFLKLSAGRVQTPTLSILVDREKEIKKFVPEP 223
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I +G + G +FD T A I+ C + A V K++ PP P
Sbjct: 224 YWLIKALL---DGEIEADHVDGKIFDKTRAEEIFSNC-ENSDAAVDKIKYSNSTTKPPVP 279
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
+ L+ A F S + T +A+ LY AG+ SYPRT + + I + +
Sbjct: 280 FNLGGLQSEAYNVFGFSPKKTQTIAQSLYTAGYTSYPRTSSQKLPESLDFKSIFLQLSKN 339
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
++ + L A L P G +D AHP IHPT + +D K+YEL+V
Sbjct: 340 SEFRTHISAL---PAKL--KPNEGKKEDAAHPAIHPTGILP--DKLDKDELKIYELIVYR 392
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
F++ + A ++I GE F R + K +L+ Y F+ P G
Sbjct: 393 FISVFFEAATFETMSTTLDIGGEKFKFRRRRVTHKGWLEHYPFKKIDNEEFPDVKEGDSI 452
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
I + + T+PP ++A L+ ++K +GT AT D I KL DR Y +
Sbjct: 453 IVKEIVSEEKETKPPARYNQASLIKELEKRELGTKATRADIIDKLYDRKYI---TGNKIE 509
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
+GE ++ + L L E+ ++ + ++ V+A +++K D
Sbjct: 510 VNQLGENIIDTLSEYCSNLTSEELTRDFENKLEGIDNDKATRESVVAEGEKEVKVILGDI 569
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKS-RDGNLMVGCLAF 663
KVK+ + + ++ G+ +CG N+V K S ++ + VGC +
Sbjct: 570 DKNKVKIGSQI------YDAYQESNIVGKC--KCG----GNLVKKYSPKNKSTFVGCSNY 617
Query: 664 PQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQF-KFRQH 704
P C+ +P A TC +C + +I F K RQH
Sbjct: 618 PDCKATYSVPKG---ANFLKKTCKTCG---LPIISFGKPRQH 653
>gi|288559648|ref|YP_003423134.1| DNA topoisomerase I TopA [Methanobrevibacter ruminantium M1]
gi|288542358|gb|ADC46242.1| DNA topoisomerase I TopA [Methanobrevibacter ruminantium M1]
Length = 741
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 175/681 (25%), Positives = 281/681 (41%), Gaps = 52/681 (7%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYN-KIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
++EKP A+ +A LS N + +YN KI + + G+ +L S GHL L
Sbjct: 6 ISEKPKSAEKIAKALSPNAQ------KKKYNRKINYWEFEENGKKTTVL--SAVGHLYSL 57
Query: 72 -DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
R R Y +K+ +D +++ ++ V D D EG
Sbjct: 58 TSASSRDRLGFDLTWVPAYEVEKQKYT----RDYINAIKKLSKGADKFVHACDYDVEGTL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I + ++ N R +FS L ++I +A + D + D AR +D G
Sbjct: 114 IGYNALKYACGNNAEAKASRMKFSTLTKKDIVEAYNTMRDIDIRQVDHGIARHMLDYYYG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
+ + + L+K S R + LS G Q PTL +V+R EIQ+ E +W I
Sbjct: 174 MNIS---SALMKAVRASS---SRFISLSAGRVQTPTLSILVDREKEIQSFVPEPYWMIKA 227
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+ + G +FD A IY C Q A VT V+ E ++ PP P + L
Sbjct: 228 KSDYD---IIADHVEGKIFDEERAKKIYADC-QGADADVTSVKVTESIRKPPIPFNLGGL 283
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
+ A F S + T A++LY G+ SYPRT + + I P+ +
Sbjct: 284 QSEAHTVFGFSPKRTQVAAQNLYVGGYTSYPRTSSQKLPESLDFKNIFAGLAKDPE---F 340
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
+ + D A L P G D AHP IHPT S S D K+Y L+V F++ S
Sbjct: 341 KKHIFDLPAKL--KPNEGKKTDAAHPAIHPTGVLP--SNLSADEAKIYSLIVYRFISVFS 396
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
+ + V + +A E F+ S + + + +L Y F+ P G Q +
Sbjct: 397 ENSKLETMKVNLKVADEKFTFSRKRVSYEGWLKHYPFKKQENDAFPPINKGDQLKIHKIL 456
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
++ T+PP +EA L+ ++K +GT AT D + KL DR Y I+ P +G
Sbjct: 457 VEEKETKPPARYNEASLIKELEKRELGTKATRADIVAKLYDRKY-IEGKKIEVKP--LGI 513
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK 610
++ ++ +L L E +++ + +K +L N +++K + K +
Sbjct: 514 NIIDTLNEYCKDLTSEELTREFERELEGIDTDKYTKEQILENGEKEVKTILAEINQNKKQ 573
Query: 611 LLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKK--SRDGNLMVGCLAFPQCRN 668
+ GE A + G C ++K+ R N VGC FP+C+
Sbjct: 574 I-------------GEKLYGAYQETNVVGECSCGGKLIKRYSPRTKNTFVGCSNFPKCKV 620
Query: 669 AVWLPGSVSEAAVTTNTCNSC 689
LP A + TC +C
Sbjct: 621 TYSLPKG---ANMLKKTCPTC 638
>gi|148642777|ref|YP_001273290.1| DNA topoisomerase I, TopA [Methanobrevibacter smithii ATCC 35061]
gi|148551794|gb|ABQ86922.1| DNA topoisomerase I, TopA [Methanobrevibacter smithii ATCC 35061]
Length = 716
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 174/702 (24%), Positives = 295/702 (42%), Gaps = 54/702 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+N + + EKP A+ +A LS + + +Y +++ + + S GH
Sbjct: 1 MNEVIICEKPKSAEKIAKALSSKAKKNVFNKKVKY-------WTLERDGKDITVLSAVGH 53
Query: 68 LMELDFDERYRKWHSCDPADLYHAP---VRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
L L D K + DL+ AP + K KD + +++ A+ + D
Sbjct: 54 LYSLTPDNPKDKVY----FDLHWAPLFEIDKKYKNYTKDYVRAIKKYAKDADSYIHACDY 109
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
D EG I + ++ + R +FS L ++I +A +N + ++ D+ AR
Sbjct: 110 DIEGTLIGYHALKYGCGDDALKKSSRMKFSTLTKKDIVEAYENRIPIDRHQVDSGVARHI 169
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + ++ L+K+ S R L LS G Q PTL +V+R EI+ +
Sbjct: 170 LDFYFGVNISK---ALMKSV---SAAKKRFLKLSAGRVQTPTLSILVDREKEIKKFVPKP 223
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I +G + G +FD T A I+ C + A V K++ PP P
Sbjct: 224 YWLIKALL---DGEIEADHVDGKIFDKTRAEEIFSNC-ENSDAAVDKIKYSNSTTKPPVP 279
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
+ L+ A F S + T +A+ LY AG+ SYPRT + + I + +
Sbjct: 280 FNLGGLQSEAYNVFGFSPKKTQTIAQSLYTAGYTSYPRTSSQKLPESLDFKSIFLQLSKN 339
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
++ + L A L P G +D AHP IHPT + +D K+YEL+V
Sbjct: 340 SEFRTHISAL---PAKL--KPNEGKKEDAAHPAIHPTGILP--DKLDKDELKIYELIVYR 392
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
F++ + A ++I GE F R + K +L+ Y F+ P G
Sbjct: 393 FISVFFEAATFETMSTTLDIGGEKFKFRRRRVTHKGWLEHYPFKKIDNEEFPDVKEGDSI 452
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
I + + T+PP ++A L+ ++K +GT AT D I KL DR Y +
Sbjct: 453 IVKEIVSEEKETKPPARYNQASLIKELEKRELGTKATRADIIDKLYDRKYI---TGNKIE 509
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
+GE ++ + L L E+ ++ + ++ V+A +++K D
Sbjct: 510 VNQLGENIIDTLSEYCSNLTSEELTRDFENKLEGIDNDKATRESVVAEGEKEVKVILGDI 569
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKS-RDGNLMVGCLAF 663
KVK+ + + ++ G+ +CG N+V K S ++ + VGC +
Sbjct: 570 DKNKVKIGSQI------YDAYQESNIVGKC--KCG----GNLVKKYSPKNKSTFVGCSNY 617
Query: 664 PQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQF-KFRQH 704
P C+ +P A TC +C + +I F K RQH
Sbjct: 618 PDCKATYSVPKG---ANFLKKTCKTCG---LPIISFGKPRQH 653
>gi|15669848|ref|NP_248662.1| DNA topoisomerase I [Methanocaldococcus jannaschii DSM 2661]
gi|14423964|sp|Q59046.1|TOP1_METJA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|1592234|gb|AAB99673.1| DNA topoisomerase I (topA) {Bacillus subtilis [Methanocaldococcus
jannaschii DSM 2661]
Length = 761
Score = 188 bits (478), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 174/697 (24%), Positives = 306/697 (43%), Gaps = 68/697 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L + EKPSVAK +A L K + I +G Y + +++ S GH
Sbjct: 5 MTALIICEKPSVAKKIANALGKAKKKSI-DGVP--------YYELERDGKKIIVASAVGH 55
Query: 68 LMELDFDERYR---------KW--HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQ 116
L L E KW S D Y V K++ K L++ ++
Sbjct: 56 LFTLVEKENKEFGFYPVFDIKWVPASVDKGKEY---VNKYI--------KALKKLSKDAD 104
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNC-HLVLRRARFSALIDREIHQAVQNLVDPNQWF 175
+ D D EGE I + ++ C C +R RFS+L +EI +A +N + +
Sbjct: 105 EFYIATDWDIEGELIGYHALKYC----CGREKAKRMRFSSLTKKEIVRAFENPDEIDYGL 160
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
DA ++R +D G + +R ++ + R +S G Q P L F+ ER
Sbjct: 161 VDAGESRHILDWYFGINLSRALMNAIRAVN-------RWKTMSVGRVQGPALAFLTEREL 213
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ- 294
EI+ + +W I K + ++ A +YE E +A V ++++
Sbjct: 214 EIKKFIPKPYWVIEALLKD---NLKAIHEKEKFWNEKEAKNVYEKIKDEKSAKVVEIKKT 270
Query: 295 QEKLK-YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+ KLK PP+ L T L++ A YF++S + T ++A+ LY+ ISYPRT +
Sbjct: 271 KRKLKPLPPFDLGT--LQREAYSYFKISPKETQEIAQKLYENALISYPRTSSQKLPKDRK 328
Query: 354 -LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ 412
L I+ HP +G +A+R+L P G +D AHP IH E S+
Sbjct: 329 YLEDILNIIKNHPVYGKWAERILKENL----KPVEGKKEDPAHPAIHIVDIPKEEL--SE 382
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG 472
++Y+L+ R LA A V+I+I GE F SG + + + ++Y F +
Sbjct: 383 KEKEIYDLIARRTLAAFWDNAEREYLNVKIDIKGEKFKLSGSRTVKEGWHEIYYFPKFDE 442
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+ +P +T+ T+PP + A ++ ++K G+GT AT + I KL+ R
Sbjct: 443 IELPPLKKNDIIKVEKITITRKETQPPKRYTVASIIKELEKRGLGTKATRAEIIDKLIKR 502
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y I D + + T++G +++ E+ + +E ++++ K DVL
Sbjct: 503 GYVIDDGSLKV--TDLGISVIETLKRFCPEIIDEKMTRDLEEKLEKIQFRKIKKDDVLDE 560
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSR 652
++++ + + K+ E +GI+ + +++A ++V +C C +++L + +
Sbjct: 561 AEKRLRKILEEFKKKE----EDIGIYLIKNLDATNKKA--KIVGKCPKCG-GDLILIRHK 613
Query: 653 DGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
G VGC +P+C LP + C++C
Sbjct: 614 KGRF-VGCSNYPECDVKYSLPDK-GRIKIPNKVCDAC 648
>gi|10579972|gb|AAG18918.1| DNA topoisomerase I [Halobacterium sp. NRC-1]
Length = 663
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/497 (26%), Positives = 224/497 (45%), Gaps = 40/497 (8%)
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GAS TRF ++ D +S G Q PTL +V++ EI+A + +++W +
Sbjct: 3 GASLTRFLSLSAGQMGED--------FISVGRVQSPTLKLIVDKEREIEAFDPDDYWELF 54
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVII---------YEMCVQEPTATVTKVRQQEKLKY 300
+ ++ T + D T A + ++ Q A V V ++ +
Sbjct: 55 ADLRKDQTTFEAQYFYEDPADGTEAERVWNEGDADAAFDALRQAGEAVVDSVSRRTRTDD 114
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PP P +T + RA+ S+ M +AEDLY AG+I+YPRT+ + + ++ E
Sbjct: 115 PPAPFNTTQF-IRAAGSLGYSAGRAMSIAEDLYTAGYITYPRTDNTVYPDDLDERDLL-E 172
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
+G A LLD +P SG + HPPIHPT ++ S+D + +YEL
Sbjct: 173 AFQQTVFGDDADSLLDQDR---LSPTSGDEETTDHPPIHPTTDFPDRNQLSEDEWAVYEL 229
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
VVR F A V+ PA A V + GE +G+ ++ Y VY + +P
Sbjct: 230 VVRRFFATVAAPAEWAHLRVTADADGESLKANGKRLVEAGYHAVYPYYDSSENHVPPVEE 289
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G T LD+ T+PP ++ L+ M+ IGT +T H+ I+KL DR Y D
Sbjct: 290 GDTLAITDARLDAKQTQPPRRYGQSRLIETMESMDIGTKSTRHNTIEKLYDRGYIENDPP 349
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
PT + EA+V +D + + S +E+DM ++ G + DV + +
Sbjct: 350 R---PTTLAEAVVEAAEDYADVVVSEEMTSQLEADMTAIADGETTLDDVTTESREMLDRV 406
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGNLMV 658
F + + ++ G+ + + + + G C E ++L++SR G+ V
Sbjct: 407 FDELTASRAEI-------------GDHLRTSLKADKSLGPCPECGDTLLLRQSRTGSHFV 453
Query: 659 GCLAFPQCRNAVWLPGS 675
GC +P+C+ + LP +
Sbjct: 454 GCDGYPECQFTLPLPST 470
>gi|401881458|gb|EJT45758.1| DNA topoisomerase 3-beta [Trichosporon asahii var. asahii CBS 2479]
Length = 1049
Score = 185 bits (469), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 163/303 (53%), Gaps = 60/303 (19%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIR-----GQPCHMLMT 62
+ VL VAEKPS+AKS+ ILS+N R+ +Y + Y+F+Y++ G+ +T
Sbjct: 232 MKVLCVAEKPSIAKSITAILSENN-FTSRQSGHQYIRNYDFDYNLPPPLGGGRGTDFTVT 290
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL LD K ++ L+ EARR Q L++W
Sbjct: 291 SVLGHLTSLDM----------------------------KRVETNLKSEARRAQILMIWT 322
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
DCDREGE+I E+ +L +IHQA + + ++ A AV+AR
Sbjct: 323 DCDREGEHIGSEI------------------ESLTLSQIHQACRQAGNLDENQAKAVEAR 364
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+DLRIGA+FTRF T L+ + + D + ++SYGPCQFPTLGFVV++Y +Q+
Sbjct: 365 TELDLRIGAAFTRFLTQTLQ-IRVPELGDQK--LVSYGPCQFPTLGFVVDQYNRVQSFVP 421
Query: 243 EEFW--TINCSHKSEEG---TATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
E+FW ++ C S +G F W R HLFD AV++ E C+++PTATV KV ++
Sbjct: 422 EQFWYISVTCERDSGDGETFKVEFKWRRNHLFDLDVAVLLCERCIEDPTATVLKVEEKPT 481
Query: 298 LKY 300
K+
Sbjct: 482 TKW 484
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 155/267 (58%), Gaps = 13/267 (4%)
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
P + LLD G ++ P +G +DKAHPPIHPT + G + K+YE V R +LA
Sbjct: 480 PTTKWLLD---GAFQTPRNGRKNDKAHPPIHPTNGAQG---LEGEERKVYEFVTRRYLAS 533
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
S+ A G +T VEI IAGE F SG ++ A+NYL+VY ++ W IP + G+QF+P
Sbjct: 534 CSKNAEGMQTTVEIEIAGEYFHASGVIVKARNYLEVYPYDKWNSNPIPDFQEGEQFVPDE 593
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR---FAP 545
L GVT P L+EADL+ MDK GIGTDAT+ DHI K++DR Y + + P
Sbjct: 594 CMLKEGVTTAPNYLTEADLVGLMDKNGIGTDATIADHIAKIIDREYVLTKTQQKTKYLVP 653
Query: 546 TNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD 603
+ +G LV G++ +G++ L KP+LR E M+ + G + K +V+ L++ + ++
Sbjct: 654 SMLGIGLVEGFNAIGFDRSLSKPHLRRETEHRMQLICDGQQRKGEVIDLSLEEYREVYVK 713
Query: 604 ARLKKVKLLEAMGIFFERWSGGEDQQA 630
A+ + +++++ + GE Q+A
Sbjct: 714 AKREFNTVVDSVKNYLH--GEGEAQEA 738
>gi|134045820|ref|YP_001097306.1| DNA topoisomerase I [Methanococcus maripaludis C5]
gi|132663445|gb|ABO35091.1| DNA topoisomerase I [Methanococcus maripaludis C5]
Length = 812
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 167/696 (23%), Positives = 299/696 (42%), Gaps = 48/696 (6%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+VAK +A L K + + +N + + +G+ +++ S GHL
Sbjct: 4 LIICEKPNVAKKIAEALGKPK-------KKSHNSVPYYELERQGE--TIVVASAVGHLYT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK---TLEEEARRCQWLVLWLDCDRE 127
L ++ K+ D+ P ++KK I+K L++ ++ + D D E
Sbjct: 55 LQ-EKTKTKFGDYPVYDIQWVPA--STLDEKKYIQKYIDALKKVSKGANKFYVATDWDIE 111
Query: 128 GENIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
GE I + + C N H R RFS+L +EI +A +N + + DA D+R +ID
Sbjct: 112 GELIGYHALNFTCGQKNAH----RLRFSSLTKKEIAKAYENPNEIDFGLVDAGDSRHKID 167
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
G + +R + + R LS G Q P L F+V++ EI+ +W
Sbjct: 168 WYFGINVSRALMQAVSSVK-------RWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYW 220
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + E A + +D A +E + ATV+ V++ K P P
Sbjct: 221 VLE-ALLDNELIAIHELEK--FWDEEEANNAFEKVKDQKQATVSDVKKTMKSIPPNPPFD 277
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF-SSGTNLHGIVQEQIGHP 365
L++ A FR S + T ++A+ LY+ G+ SYPRT + + I++ +
Sbjct: 278 LGALQREAHNMFRFSPKRTQEIAQKLYEKGYCSYPRTSSQKLPDDKAYMDEILKNLSKNK 337
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
D+ PY +++L R P SG DD AHP +H + + D KLYEL+ R
Sbjct: 338 DYKPYIEKILSEN----RKPISGKKDDPAHPAVHAVDVP--KEKLPDDELKLYELIARRT 391
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
+A A + + ++I GE+F SG + + + ++Y + + + +P
Sbjct: 392 IALYWDNAKREYSKINLDINGEIFKLSGSRTVEEGWHEIYYYTKFDEVELPELKKKDVIN 451
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ ++ T+PP + A ++ ++K +GT AT D ++KL R Y I+D +
Sbjct: 452 VNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYVIEDGS--LTV 509
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T++G + E+ + L +E ++ + K DV+ ++ + R
Sbjct: 510 TDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEDVIKETETKLTKILGEFR 569
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
LK+ ++ + + S Q G+ +CG +M++ +++ VGC +P
Sbjct: 570 LKEKEIGNELVDKLD--STNRSLQIIGKC--KCG----GDMIIIRTKGKKRFVGCSNYPD 621
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKF 701
C LP V C C + L + K
Sbjct: 622 CDVTFPLPQK-GRIKVLNEVCEKCQNPVIGLDRLKI 656
>gi|256810677|ref|YP_003128046.1| DNA topoisomerase I [Methanocaldococcus fervens AG86]
gi|256793877|gb|ACV24546.1| DNA topoisomerase I [Methanocaldococcus fervens AG86]
Length = 759
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 172/699 (24%), Positives = 306/699 (43%), Gaps = 72/699 (10%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L + EKPSVAK +A L K + I +G Y + +++ S GH
Sbjct: 1 MTALIICEKPSVAKKIANALGKAKKKSI-DGVP--------YYELERDGKKIIVASAVGH 51
Query: 68 LMELDFDERYR---------KW--HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQ 116
L L E KW S D Y V K++ K L++ ++
Sbjct: 52 LFTLVEKENKEFGTYPVFDVKWVPASVDKGKEY---VNKYI--------KALKKLSKEAN 100
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNC-HLVLRRARFSALIDREIHQAVQNLVDPNQWF 175
+ D D EGE I + ++ C C +R RFS+L +EI +A +N + +
Sbjct: 101 EFYVATDWDIEGELIGYHALKYC----CGREKAKRMRFSSLTKKEIVKAFENPDEIDYGL 156
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
DA ++R +D G + +R ++ + R +S G Q P L F+ ER
Sbjct: 157 VDAGESRHIVDWYFGINLSRALMNAIRAVN-------RWKTMSIGRVQGPALAFLTEREL 209
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ- 294
EI+ + +W I K + +D A IYE E TA V +V++
Sbjct: 210 EIKKFVPKPYWVIEALLKD---NLKAIHEKEKFWDEKEAKNIYEKIKDEKTAKVLEVKKT 266
Query: 295 QEKLK-YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+ K+K PP+ L T L++ A YF++S + T ++A++LY+ ISYPRT +
Sbjct: 267 KRKIKPLPPFDLGT--LQREAYSYFKISPKETQEIAQNLYEKALISYPRTSSQKLPKDRK 324
Query: 354 -LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ 412
L I++ HP +G + R+L P G +D AHP IH E S+
Sbjct: 325 YLEDILKIIKEHPIYGKWVGRILKDNL----KPVGGKKEDPAHPAIHIVDVPKEEL--SE 378
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG 472
K+Y+L+ R LA A ++I+I GE+F SG + + + ++Y F +
Sbjct: 379 KEKKIYDLIARRTLAAFWDNAEREYLNIKIDIKGEIFKLSGSRTVKEGWHEIYYFPKFDE 438
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+ +P +T+ T+PP + A ++ ++K G+GT AT + + KL+ R
Sbjct: 439 VELPPLKKNDIINIEKITITRKETQPPKRYTVASIIKELEKKGLGTKATRAEIVDKLIKR 498
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y + + + + T++G +++ E+ + +E ++++ K DVL
Sbjct: 499 GYVVDEGSLKV--TDLGISVIETLKRFCPEIIDEKMTRDLEEKLEKIQFRKIKKDDVLEE 556
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLK--K 650
++++ + + K+ + +G + + +++A ++V +C C ++++ K
Sbjct: 557 AEKKLRKILEEFKKKE----KDIGTYLIKNLDSTNKKA--KIVGKCPKCGGDLILIRYNK 610
Query: 651 SRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
SR VGC +P+C LP + +C +C
Sbjct: 611 SR----FVGCSNYPECDVKYSLPDK-GRIKIPNKSCEAC 644
>gi|294871527|ref|XP_002765964.1| DNA topoisomerase III, putative [Perkinsus marinus ATCC 50983]
gi|239866424|gb|EEQ98681.1| DNA topoisomerase III, putative [Perkinsus marinus ATCC 50983]
Length = 262
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 13/228 (5%)
Query: 388 GGHDDKAHPPIHPTKFSS--GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
G HDD AHPPIHP + + ++ + +++YEL+ RHFLACV+ A+GAE+ +E+ +
Sbjct: 11 GNHDDGAHPPIHPVQLAGPGSQTPLQGEQWRVYELITRHFLACVAPDAIGAESKIEVTVG 70
Query: 446 GEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSE 504
E+F +G ++ +N+L+VY + W G +P Q+ L + SG+T PP LLSE
Sbjct: 71 DEMFHATGLTVVEENWLEVYPYVKWKGTTELPPVALYQRVRVAELMMTSGMTEPPELLSE 130
Query: 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY-------- 556
A+L+ MDK IGTDATMH+HI + +R YA + RF P+++G ALV G+
Sbjct: 131 AELIDLMDKNHIGTDATMHEHIATIENRGYASRTPGGRFNPSDLGVALVQGFGAFQNLNG 190
Query: 557 --DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
D L P LR+ ME+DM V+ G K+K ++A CL M+ ++
Sbjct: 191 RDGDFRLHLAAPRLRAQMEADMALVARGEKTKVAMVAACLAMMRQIYV 238
>gi|147802938|emb|CAN60002.1| hypothetical protein VITISV_018145 [Vitis vinifera]
Length = 346
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 102/138 (73%), Gaps = 6/138 (4%)
Query: 668 NAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQ 727
N VWLPGS+SEAA TT +CN CTPGPVY IQFKFR+ EIPP +N++HLGC+ GCDE LRQ
Sbjct: 68 NVVWLPGSISEAAXTTISCNHCTPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQ 127
Query: 728 LIEICGTGSRI-----PARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGS 782
L EICG GSRI ARGRG ASS N Q+SN RQ ACI+C Q GHSS+DCPS+ S
Sbjct: 128 LTEICGXGSRICSTVPAARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSRVPRS 187
Query: 783 RNARANGMN-PQSGMTAE 799
RN++++ N P G A
Sbjct: 188 RNSQSHRTNMPSDGRIAS 205
>gi|84489180|ref|YP_447412.1| hypothetical protein Msp_0366 [Methanosphaera stadtmanae DSM 3091]
gi|84372499|gb|ABC56769.1| TopA [Methanosphaera stadtmanae DSM 3091]
Length = 722
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 171/694 (24%), Positives = 289/694 (41%), Gaps = 71/694 (10%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKI--YEFNYSIRGQPCHMLMTSVTGHL 68
L + EKP VA+ VA LS + ++ Y ++ YEF G + + S GHL
Sbjct: 4 LIICEKPKVAEKVAKALSDSPV------KNSYKRVPYYEFT---NGNGTKITVLSAVGHL 54
Query: 69 MELDFDERYRK------WHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
L + K W D V+ ++ D K ++A R +
Sbjct: 55 FSLKAKNKKDKRLFDVEWVPLSETDKSKKYVKNYI-----DTIKKFSKDADR---FIHAC 106
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQN---LVDPNQWFADAV 179
D D EG I F + + R +FSAL +++ ++ N L + W D+
Sbjct: 107 DYDTEGTLIGFNALRYICGEDSIDKSFRMKFSALTKKDLIESYSNAYPLKEDKSW-VDSG 165
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTD--DRNLVLSYGPCQFPTLGFVVERYWEI 237
+ R +D G + ++ T DSV + +R + LS G Q PTL + ER EI
Sbjct: 166 ETRHVLDFLFGVNISKSMT--------DSVLNVTNRYVQLSAGRVQTPTLAILTEREKEI 217
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
Q E +W I + + +G +FD I + C + ATV K+ ++
Sbjct: 218 QKFIPEPYWLIKAKLQK---SIVADHKKGKIFDKKEVDAILKNC-KGKDATVEKITNRKT 273
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGI 357
K P P L+ A F + T ++A++LY G+ SYPRT + L I
Sbjct: 274 KKDLPVPFELGTLQSEAYAQFGFTPRKTQQIAQNLYVEGYTSYPRTSSQKLPESLGLPNI 333
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKL 417
+ + HP + +L P G D+AHP IHPT + S+D+ K+
Sbjct: 334 LSQLSKHPKYKDKISQLEQPY-----KPHEGKKTDEAHPAIHPT--GTLPKDISEDYQKI 386
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY--LDVYRFESWGGLVI 475
Y+L+ F++ +PA VE++I GE FS S + I + + LD Y+++
Sbjct: 387 YDLITYRFISIFGKPAEMESIKVELDIGGEPFSFSRQRISKEGWLSLDPYQYKKVKNEEF 446
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P GQ + + T+PP ++A ++ ++K G+GT +T + + L R Y
Sbjct: 447 PEIKEGQT-TKAKVASEEKETKPPARYNQASIIRELEKRGLGTKSTRANIVSILYTRKYV 505
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+ + +G+ ++ + + + E+D+ + ++A V+ + +
Sbjct: 506 ---EGKKIEVSQLGQQIINTLEKYSERITSEQMTREFETDISNIKENEITEATVIEDAKK 562
Query: 596 QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
++ LD+ + E +G + G +Q VV +CG N+++ S G
Sbjct: 563 ELNG-ILDSIDDNI---EDIG---KELYGAYEQ---SRVVGKCGCG--GNLIIISSPRGG 610
Query: 656 LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
VGC +P C+ LP A V TC C
Sbjct: 611 KFVGCSNYPDCKKTYSLPAG---ANVLKTTCEKC 641
>gi|449528375|ref|XP_004171180.1| PREDICTED: DNA topoisomerase 3-alpha-like, partial [Cucumis
sativus]
Length = 257
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CRN VWLPGS++EA VT++ C CTPGPVYLIQFKFRQ EIPP +N NHLGC+GGCD+ L
Sbjct: 1 CRNVVWLPGSIAEATVTSDRCTLCTPGPVYLIQFKFRQLEIPPNYNANHLGCVGGCDDIL 60
Query: 726 RQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRNA 785
RQL EICGTGSR+ ARGRG SS+N Q+ N Q CI+CQQ+GHSS+DCPSQ GSR+A
Sbjct: 61 RQLTEICGTGSRVSARGRG--TSSSNVQRDNPGQSVCIFCQQVGHSSNDCPSQSVGSRSA 118
Query: 786 R 786
+
Sbjct: 119 Q 119
>gi|333988062|ref|YP_004520669.1| DNA topoisomerase I [Methanobacterium sp. SWAN-1]
gi|333826206|gb|AEG18868.1| DNA topoisomerase I [Methanobacterium sp. SWAN-1]
Length = 787
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 167/685 (24%), Positives = 283/685 (41%), Gaps = 56/685 (8%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL- 71
+ EKP A+ ++ LSK + Y K+ + + G+ +L + GHL L
Sbjct: 6 ICEKPKAAEKISSALSKGAA------KKHYKKVPYYEFEENGKKTTVL--TAVGHLYSLA 57
Query: 72 DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENI 131
D++ K + LY +K ++ D K L ++A V D D EG I
Sbjct: 58 PKDKKQDKLFDVEWVPLYEKDKKKKYVKNYIDAIKKLSKDA---DTFVHACDYDIEGTLI 114
Query: 132 AFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGA 191
+ ++ + R +FS L D +I +A + ++ + D+ AR +D G
Sbjct: 115 GYNALKYACGDESLKNVMRMKFSTLTDEDILKAYKKPMELDFKQVDSGIARHVLDFFFGV 174
Query: 192 SFTRFQTMLLKNFHIDSV--TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
+ ++ T DSV R + LS G Q PTL +V+R EI+ +W I
Sbjct: 175 NMSKHLT--------DSVMKATKRYIQLSAGRVQTPTLSILVDREKEIKEFIPVPYWLIK 226
Query: 250 CS---HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+EG T +G + + A I C + A +T+V ++ K PP+P
Sbjct: 227 ADLDVTGVKEGI-TADHKKGKILEKKDADAILVEC-KGKDAVITEVNLRKTTKTPPFPFD 284
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
L+ A F S T ++A++LY G+ SYPRT + I+++
Sbjct: 285 LGSLQSEAYGVFGFSPRKTQQIAQNLYTEGYTSYPRTSSQKLPKSIGYDKILKKL----- 339
Query: 367 WGPYAQRLLDHAAGLWR--NPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
Y+ +H A L + P G D+AHP IHPT E S D+ KLYEL+V
Sbjct: 340 --SYSSAFGNHVAQLKKPYKPNEGKKTDEAHPAIHPTGVLPKE--LSTDYRKLYELIVYR 395
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
F++ + A + I E F+ S + + ++ Y F PT G+
Sbjct: 396 FISVFGENATLETMKTTLTIGKEEFNFSRKRMSKMGWMGHYPFRKIEEDYFPTMNKGETL 455
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ + T+PP ++A L+ ++K G+GT +T + I L R Y +
Sbjct: 456 NVKEVRAEDKETKPPARYNQASLIRELEKRGLGTKSTRANIIDILFSRKYV---EGKKIT 512
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
+GE L+ ++ L E+ ++ + G K ++ ++ + D
Sbjct: 513 VNKLGEQLIDTLRKYSKKITSEELTREFETKLEGIMEGKDKKDKIIDEARVEVSSILDDI 572
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
K+K+ E E + + + G+ +CG N++L S G+ VGC +P
Sbjct: 573 EKNKLKIGE------ELYKSYRESRVVGKC--KCG----KNLILIDSPRGSTFVGCSGYP 620
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSC 689
+C++ +P A V TC C
Sbjct: 621 ECKSTYSMPRG---ATVLKTTCEEC 642
>gi|403304311|ref|XP_003942748.1| PREDICTED: DNA topoisomerase 3-beta-1 [Saimiri boliviensis
boliviensis]
Length = 838
Score = 178 bits (452), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 185/383 (48%), Gaps = 13/383 (3%)
Query: 261 FSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRM 320
W R +FD A + M E A V ++EK K P L+T+E+ + AS M
Sbjct: 234 LDWDRVRVFDREIAQMSLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGM 293
Query: 321 SSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG 380
+HTM+ E LY G+ISYPRTET +L G +++Q HP W ++LL A G
Sbjct: 294 GPQHTMQTTERLYTQGYISYPRTETTHCPENFDLKGALRQQANHPYWADMVKQLL--AEG 351
Query: 381 LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
+ N GHD H PI P + S+ E+ D + L E + RHF+A VS ++ +
Sbjct: 352 I--NRPRKGHDAGHHLPITPMR-SATEAELGGDAWWLCEYITRHFVATVSHDCKYLQSTI 408
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQQFIPTTLTLDSGVTRPP 499
I E+F+ SG+ +L+ + ++ ++S +PT G F + + + T PP
Sbjct: 409 SFRIGPELFTCSGKTVLSPGFTEIMPWQSVPLEESLPTCQRGDTFTVSEVKMLEKQTSPP 468
Query: 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
L+EA+L+ M++ GIGTDA++ HI + Y ++ R PTN+G LV GY +
Sbjct: 469 DYLTEAELIMLMERHGIGTDASIPVHI-NICQHNYVTVESGRRLKPTNLGIVLVDGYYKI 527
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFF 619
EL P +RS +E + ++ G VL + L K F + E M + F
Sbjct: 528 DAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVDSIAGMDELMEVSF 587
Query: 620 ERWSGGEDQQAAGEVVRQCGICQ 642
+ A G+ + +CG C
Sbjct: 588 SPLA------ATGKPLSRCGKCH 604
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 76 RYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFE 134
+Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EGENI FE
Sbjct: 107 KYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFE 166
Query: 135 VIEV 138
V++
Sbjct: 167 VLDA 170
>gi|68010938|ref|XP_670942.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56486663|emb|CAI03408.1| hypothetical protein PB301170.00.0 [Plasmodium berghei]
Length = 242
Score = 178 bits (451), Expect = 1e-41, Method: Composition-based stats.
Identities = 95/242 (39%), Positives = 146/242 (60%), Gaps = 10/242 (4%)
Query: 5 GRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSV 64
GR I VLNVAEKPSVA ++ I SK + + ++ S+YN ++ F+Y + + M +TSV
Sbjct: 2 GR-IKVLNVAEKPSVASAIVSIFSKGESNK-KKSYSKYNPVFTFDYKMENETWSMFVTSV 59
Query: 65 TGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
TGHL + FD++Y+ W++ DP +L+ A + ++ +DKK I+ L++ ++ C L+LWLDC
Sbjct: 60 TGHLTDQKFDDKYKNWNNTDPHELFDAKITIYIDKDKKPIENNLKKYSKDCNVLILWLDC 119
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I FEVI C N L + RA+FSA+ +++I A+ NL N+ A VD R+
Sbjct: 120 DREGEHICFEVINACSVTNKKLKIHRAQFSAVTEKDIKYAINNLKSQNKILAQRVDVRR- 178
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+ L +G+ F R M ++ I D +++ Y C F TLGFV + I E
Sbjct: 179 LYLTMGSIFNRI--MTIRYLWI----KDDTIIIRYH-CPFLTLGFVCIDIYIINNFIIEY 231
Query: 245 FW 246
+W
Sbjct: 232 YW 233
>gi|45358519|ref|NP_988076.1| DNA topoisomerase I [Methanococcus maripaludis S2]
gi|44921277|emb|CAF30512.1| DNA topoisomerase I [Methanococcus maripaludis S2]
Length = 823
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 164/688 (23%), Positives = 293/688 (42%), Gaps = 56/688 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+VAK +A L K + + +N + + G+ +++ S GHL
Sbjct: 4 LIICEKPNVAKKIAEALGKPK-------KKSHNSVPYYELERNGE--SIVVASAVGHLYT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK---TLEEEARRCQWLVLWLDCDRE 127
L ++ K+ D+ P ++KK I+K L++ ++ + D D E
Sbjct: 55 LQ-EKTKTKFGDYPVYDINWVPA--STLDEKKYIQKYIDALKKVSKDANKFYVATDWDIE 111
Query: 128 GENIAFEVIEV-CRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
GE I + + C N H R RFS+L +EI +A +N + + DA D+R +ID
Sbjct: 112 GELIGYHALNFSCGQKNAH----RLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKID 167
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
G + +R + + R LS G Q P L F+V++ EI+ +W
Sbjct: 168 WYFGINVSRALMQAVSSVK-------RWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYW 220
Query: 247 TINCSHKSEEGTATFSWMRGH----LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ E + H +D A YE + ATV+ V++ K P
Sbjct: 221 VL-------EALLDNDLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPN 273
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF-SSGTNLHGIVQEQ 361
P L++ A FR S + T +VA+ LY+ G+ SYPRT + + +++
Sbjct: 274 PPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNL 333
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+ ++ PY + +L+ R P SG +DD AHP +H + + D KLYEL+
Sbjct: 334 SKNKNYKPYIETILNEN----RKPISGKNDDPAHPAVHAVDVP--KEKLPDDELKLYELI 387
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
R +A A + + ++I GE F SG + + + ++Y + + + +P
Sbjct: 388 ARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEVELPELKKN 447
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ ++ T+PP + A ++ ++K +GT AT D ++KL R Y I+D +
Sbjct: 448 DVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYVIEDGS- 506
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T++G + E+ + L +E ++ + K +V+ ++
Sbjct: 507 -LTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKIL 565
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
+ RLK+ ++ + + S Q G+ +CG +M++ +++ VGC
Sbjct: 566 GEFRLKEKEI--GTELVDKLDSTNRSLQIIGKC--KCG----GDMIIIRTKGKKRFVGCS 617
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
+P C LP V C C
Sbjct: 618 NYPDCEVTFPLPQK-GRIKVLNEVCEKC 644
>gi|42557740|emb|CAF28714.1| putative DNA topoisomerase I [uncultured crenarchaeote]
Length = 715
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 187/703 (26%), Positives = 310/703 (44%), Gaps = 47/703 (6%)
Query: 11 LNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L + EKP AK ++ +L SKN I + S ++E S + Q ++ S GH+
Sbjct: 14 LVICEKPLAAKRISQVLGSKNI---IEKKYSLGIVVFEIT-SDKNQ--RFVVCSALGHMY 67
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL---DCDR 126
L E+ RK + + +P V +K I +TL+ AR + ++ D D
Sbjct: 68 SLIPLEKNRKKYPI--YETVWSPKHSTVANQRKRILETLKVIARISEGASGYIHACDYDL 125
Query: 127 EGENIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
EGE I + ++E C+ + + RRA+FS+L D EI+Q+ NL + A+A AR +
Sbjct: 126 EGELIGYNILEYACK--HKYEQSRRAKFSSLTDSEINQSFNNLQQTDIRIAEAGKARHLV 183
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
D G + +R L N + D+R LS G Q PTLGF+V+R +I+ H +
Sbjct: 184 DFVFGINLSR----ALVNCLSVANQDNRYYNLSIGRVQGPTLGFIVDREIKIRKHVPDPV 239
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W I + + ++ ++ + + + ++ I C + AT+ V Q K PP P
Sbjct: 240 WYITGNFQ-KDNSSFQANLSTAIHKFSEMQKILATC-KNGKATIKTVICQTKKVNPPTPF 297
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ---EQI 362
+ +L+K A R F++S T +AE LY A ISYPRT + S I+ +
Sbjct: 298 NLSDLQKEAFRIFKLSPAVTHSIAESLYLAALISYPRTSSKKLPSSIGYEKILNLLSKNY 357
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
D + L+ + P G +D AHP I+PT + S K+ +L++
Sbjct: 358 ATADKNKIQELLMQK----YLVPFQGIEEDPAHPAIYPTGLK--HKKLSVQQSKILDLII 411
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPTYVHG 481
+ FLA A+ + V I ++G F G IL ++ +Y + S +P V G
Sbjct: 412 KRFLATFGDGALTNFSEVIITVSGYDFIAKGNTILNYGWIPLYEPYFSIKETRLPHLVKG 471
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+T T+P ++A +L M+ GIGT +T + + L+ R Y ++
Sbjct: 472 DSAQTNEVTALEDFTKPVARYNQASILEKMESEGIGTKSTRAETVNLLIKRNYILQH-KI 530
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
PT +G ++ ++ L + +ES +K V G + N + ++
Sbjct: 531 GLEPTVLGFTILDTMKKFIPDIVSTKLTAFLESSIKRVEQGELD----MINLRKHLEKSL 586
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKS-RDGNLMVGC 660
L L ++K+ E M I E +G + +C C MVL KS + + C
Sbjct: 587 LKP-LNRIKINE-MAIGNEIKNGLTTSRVEMS-YGKCPKCHIGEMVLIKSNKTKKRFLAC 643
Query: 661 LAF--PQCRNAVWLPGSVSEAAVTTNTCNSCTPG-PVYLIQFK 700
F C+ +P + + N + CT G P+ I FK
Sbjct: 644 SKFRVTGCKTITIVP----QFGLIKNDNSVCTCGWPILRIIFK 682
>gi|340624276|ref|YP_004742729.1| DNA topoisomerase I [Methanococcus maripaludis X1]
gi|339904544|gb|AEK19986.1| DNA topoisomerase I [Methanococcus maripaludis X1]
Length = 823
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 164/688 (23%), Positives = 292/688 (42%), Gaps = 56/688 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+VAK +A L K + + +N + + G+ +++ S GHL
Sbjct: 4 LIICEKPNVAKKIAEALGKPK-------KKSHNSVPYYELERNGE--SIVVASAVGHLYT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK---TLEEEARRCQWLVLWLDCDRE 127
L ++ K+ D+ P ++KK I+K L++ ++ + D D E
Sbjct: 55 LQ-EKTKTKFGDYPVYDINWVPA--STLDEKKYIQKYIDALKKVSKDANKFYVATDWDIE 111
Query: 128 GENIAFEVIEV-CRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
GE I + + C N H R RFS+L +EI +A +N + + DA D+R +ID
Sbjct: 112 GELIGYHALNFSCGQKNAH----RLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKID 167
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
G + +R + + R LS G Q P L F+V++ EI+ +W
Sbjct: 168 WYFGINVSRALMQAVSSVK-------RWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYW 220
Query: 247 TINCSHKSEEGTATFSWMRGH----LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ E + H +D A YE + ATV+ V++ K P
Sbjct: 221 VL-------EALLDNDLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPN 273
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF-SSGTNLHGIVQEQ 361
P L++ A FR S + T +VA+ LY+ G+ SYPRT + + +++
Sbjct: 274 PPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNL 333
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+ ++ PY + +L+ R P SG DD AHP +H + + D KLYEL+
Sbjct: 334 SKNKNYKPYIETILNEN----RKPISGKKDDPAHPAVHAVDVP--KEKLPDDELKLYELI 387
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
R +A A + + ++I GE F SG + + + ++Y + + + +P
Sbjct: 388 ARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEVELPELKKN 447
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ ++ T+PP + A ++ ++K +GT AT D ++KL R Y I+D +
Sbjct: 448 DVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYVIEDGS- 506
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T++G + E+ + L +E ++ + K +V+ ++
Sbjct: 507 -LTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKIL 565
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
+ RLK+ ++ + + S Q G+ +CG +M++ +++ VGC
Sbjct: 566 GEFRLKEKEI--GTELVDKLDSTNRSLQIIGKC--KCG----GDMIIIRTKGKKRFVGCS 617
Query: 662 AFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
+P C LP V C C
Sbjct: 618 NYPDCEVTFPLPQK-GRIKVLNEVCEKC 644
>gi|159906081|ref|YP_001549743.1| DNA topoisomerase I [Methanococcus maripaludis C6]
gi|159887574|gb|ABX02511.1| DNA topoisomerase I [Methanococcus maripaludis C6]
Length = 814
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 162/684 (23%), Positives = 294/684 (42%), Gaps = 48/684 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+VAK +A L K + + +N + + G+ ++++ S GHL
Sbjct: 4 LIICEKPNVAKKIAEALGKPK-------KKSHNSVPYYEVERSGE--NVIVASAVGHLYT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK---TLEEEARRCQWLVLWLDCDRE 127
L ++ K+ D+ P ++KK I+K L++ ++ + D D E
Sbjct: 55 LQ-EKNKAKFGDYPVYDIDWVPA--STLDEKKYIQKYIDALKKVSKEANKFYVATDWDIE 111
Query: 128 GENIAFEVIEV-CRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
GE I + + C N H R RFS+L +EI +A + + + DA D+R +ID
Sbjct: 112 GELIGYHALNFSCGQKNAH----RLRFSSLTKKEIVKAYETPNEIDFGLVDAGDSRHKID 167
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
G + +R + + R LS G Q P L F+V++ EI+ +W
Sbjct: 168 WYFGINVSRALMQAVSSVK-------RWKTLSTGRVQGPALAFLVDKEMEIKNFVPTPYW 220
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + E A + +D A +E + ATV+ V++ K P P
Sbjct: 221 VLE-ALLDNELIAIHELEK--FWDEDEANKAFEKVKDQKQATVSDVKKTMKSIPPNVPFD 277
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF-SSGTNLHGIVQEQIGHP 365
L++ A FR S + T ++A+ LY+ G+ SYPRT + + I++ +
Sbjct: 278 LGTLQREAHNMFRFSPKKTQEIAQKLYEKGYCSYPRTSSQKLPDDKAYMEEILKNLSKNK 337
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
++ PY + +L+ R P SG DD AHP +H + D KLYEL+ R
Sbjct: 338 NYRPYIETILNEN----RKPISGKKDDPAHPAVHAVDVP--KEHLPDDELKLYELIARRT 391
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
+A A + + ++I GE+F SG + + + ++Y + + + +P
Sbjct: 392 IALYWDNAEREYSKINLDINGEIFKLSGSRTVKEGWHEIYYYTKFDEIELPELKETDIVK 451
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ ++ T+PP + A ++ ++K +GT AT D ++KL R Y I+D +
Sbjct: 452 VNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYVIEDGS--LTV 509
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T++G + E+ + L +E ++ + K DV+ ++ + R
Sbjct: 510 TDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEDVIKETENKLTKILGEFR 569
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
LK+ ++ + + S Q G+ +CG ++++ +++ VGC +P
Sbjct: 570 LKEKEIGNELVDKLD--STNRSLQIIGKC--KCG----GDLIIIRTKGKKRFVGCSNYPD 621
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSC 689
C LP V C +C
Sbjct: 622 CDITFPLPQK-GRIKVLNEVCETC 644
>gi|336122440|ref|YP_004577215.1| DNA topoisomerase I [Methanothermococcus okinawensis IH1]
gi|334856961|gb|AEH07437.1| DNA topoisomerase I [Methanothermococcus okinawensis IH1]
Length = 780
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 167/695 (24%), Positives = 294/695 (42%), Gaps = 67/695 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+VAK +A L + + N I + G+ +++ S GHL
Sbjct: 4 LIICEKPNVAKKIASALGNPK-------KKSNNGIPYYELERNGK--KIIVASAVGHLFT 54
Query: 71 L------------DFDERYRKWHSCDPADLYHAP--VRKHVPEDKKDIKKTLEEEARRCQ 116
L ++ KW PA V+K++ TL++ A+
Sbjct: 55 LEEEKTGEKKKFGEYPVFNIKWV---PASTIKGKEYVQKYI--------NTLKKLAKEAD 103
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
+ D D EGE I + + C N +R RFS+L EI +A +N +
Sbjct: 104 EFYIASDWDIEGELIGYHALYYCCGKN---DAKRMRFSSLTKNEIIKAYENPDRVDFGLV 160
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
DA D+R +D G + +R ++ +R +S G Q P L F+V+R E
Sbjct: 161 DAGDSRHRVDWYYGINVSRALMQSIRAV-------NRWQTMSTGRVQGPALSFLVDRELE 213
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
I+ + +W I +H E A + +D A IY E A ++ +++ +
Sbjct: 214 IKKFVPKPYWVIG-AHLKNELLAIHE--KDKFWDEKEANEIYNRIKDEKEAIISSIKKTK 270
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN-LH 355
K P P L++ A R FR S + T ++A+ LY+ G SYPRT + N +
Sbjct: 271 KKIKPNPPFDLGTLQREAHRIFRFSPKKTQEIAQKLYEMGICSYPRTSSQKLPKDDNYIK 330
Query: 356 GIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY 415
I+ + H D+ YA+ +L R P G D AHP IH + + D
Sbjct: 331 DILTKVSNHGDYKKYAELILREN----RKPIEGKKSDPAHPAIHVVDVP--KELLNDDEK 384
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
KLY+L+VR LA A V +NI GE F SG + + + ++Y F + +
Sbjct: 385 KLYDLIVRRTLAAFWDNAEREYINVVLNIDGENFKLSGSRTIKEGWHEIYYFTKFDEKEL 444
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P+ + +T++ T+PP + A ++ ++ +GT AT D ++KL+ R Y
Sbjct: 445 PSLRKNDKIPVEKITIERKETKPPKRYTMASIIKELESRELGTKATRADIVEKLVKRGYL 504
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
I D + + T++G A++ E+ + +E + + K +VL +
Sbjct: 505 IDDGSLKV--TDLGIAVIETLKKYCPEIIDEKMTRELEKKLDRLQKRTIKKENVLKDAEN 562
Query: 596 QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ-ESNMVLKKSRDG 654
+++A + + K+ ++ + + E + ++ G C+ ++++ K++
Sbjct: 563 KLRAILEEVKKKEKEIGKEL---------VEKIDTTNKSLKTVGKCECGGDLIIIKTKGK 613
Query: 655 NLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
+GC +P+C+ LP + TC C
Sbjct: 614 KRFIGCTNYPECKKTYPLPQK-GRIKILNETCEIC 647
>gi|150400465|ref|YP_001324231.1| DNA topoisomerase I [Methanococcus aeolicus Nankai-3]
gi|150013168|gb|ABR55619.1| DNA topoisomerase I [Methanococcus aeolicus Nankai-3]
Length = 853
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 163/699 (23%), Positives = 303/699 (43%), Gaps = 54/699 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+V+K +A L K + + N + Y I +++ S GHL
Sbjct: 4 LIICEKPNVSKKIADALGK--------PKKKSNDGVPY-YEIERNGKKIIVASAVGHLYT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPV--RKHVP----EDKKDIKK---TLEEEARRCQWLVLW 121
L+ + K + P+ + VP + K+ ++K TL + +++ +
Sbjct: 55 LEEKKSDEKGKNKGRNSFGRYPIFDIRWVPASTIKGKEYVQKYINTLNKLSKKSNDYYIA 114
Query: 122 LDCDREGENIAFEVIEVCRAVNCHL-VLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
D D EGE I + + C C+ +R RFS+L ++I +A + + + DA D
Sbjct: 115 SDWDIEGELIGYHALRYC----CNEDNAKRMRFSSLTKKDIIKAYEQPDNIDFGLVDAGD 170
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
R +D G + + +++ + R +S G Q P L F+V+R EI+
Sbjct: 171 TRHRLDWYYGINMSVALMQCIRSVN-------RWHTMSTGRVQGPALSFLVDRELEIRKF 223
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+W I+ + K +G + +D A IY E A V V++ +K
Sbjct: 224 VPVPYWVIDANLK--DGLIAIH-EKDKFWDEKEANTIYNKIKDEKEAIVANVKKTKKTIK 280
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN-LHGIVQ 359
P P L++ A R F+ S + T ++A+ LY+ SYPRT + N ++ I+
Sbjct: 281 PNPPFDLGALQREAHRIFKFSPKKTQEIAQKLYEKAICSYPRTSSQKLPKDDNYINDILN 340
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+ + H +G YA+ +++ R P G DD AHP IH + + + KLY+
Sbjct: 341 KVVNHNIYGKYAKSIIEEG----RKPIEGKKDDPAHPAIHFV--DTPKEELPPEEQKLYD 394
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
L+VR LA A + + ++I GE+F SG + + + ++Y F + +P
Sbjct: 395 LIVRRTLAVFWDNAEREYSNISLDIGGEIFKLSGSRTIKEGWHEIYYFTKFDETELPALR 454
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
+ + + ++ T+PP + + ++ ++ +GT +T D ++KL+ R Y I+D
Sbjct: 455 KNNKIVVEKINIEEKETKPPKRYTMSSIIKELENRELGTKSTRADIVEKLVKRGYLIEDN 514
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
+ T++G ++ E+ + +E + + K VL + +++ A
Sbjct: 515 S--LTVTDLGIGVIEVLKKYCPEIIDEQMTRELEKKLDRLQKRTIKKETVLKDAEKKLTA 572
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ-ESNMVLKKSRDGNLMV 658
L+ KK K + A + E A + ++ G C+ ++ + + ++ V
Sbjct: 573 -ILNEVKKKEKEIGAELV--------EKVDATNKTLQTIGKCECGGDLGIIRIKNKRRFV 623
Query: 659 GCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLI 697
GC +P+C A LP + C C P+ LI
Sbjct: 624 GCSNYPECTIAYPLPAK-GRIKIPNEVCEVCG-KPMLLI 660
>gi|150398914|ref|YP_001322681.1| DNA topoisomerase I [Methanococcus vannielii SB]
gi|150011617|gb|ABR54069.1| DNA topoisomerase I [Methanococcus vannielii SB]
Length = 817
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 169/692 (24%), Positives = 289/692 (41%), Gaps = 64/692 (9%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+VAK +A L K + + +N + + G+ +++ S GHL
Sbjct: 4 LIICEKPNVAKKIAEALGKPK-------KKSHNSVPYYELERNGE--DIIVASAVGHLYT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK---TLEEEARRCQWLVLWLDCDRE 127
L E+ K+ D+ P +DKK I+K TL++ ++ + D D E
Sbjct: 55 LQEKEK-TKFGDYPVYDIEWVPA--STLDDKKYIQKYIDTLKKVSKEASKFYVATDFDIE 111
Query: 128 GENIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FADAVDARQ 183
GE I + + C N H R RFS+L +EI ++ +N PNQ DA D+R
Sbjct: 112 GELIGYHALSHACGQKNAH----RLRFSSLTKKEIIKSFEN---PNQIDFGLVDAGDSRH 164
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+ID G + +R + + R LS G Q P L F+V++ EI+
Sbjct: 165 KIDWYFGINVSRALMQAVSSAK-------RWKTLSTGRVQGPALAFLVDKEIEIKNFIPT 217
Query: 244 EFWTINC----SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+W + + K+ F+ D A YE E A VT++++ K
Sbjct: 218 PYWVLEAVLDNNLKALHELEKFT-------DEKRAKEAYEKVKNEKEALVTEIKKTLKSI 270
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF-SSGTNLHGIV 358
P P L++ A FR S + T +VA+ LY+ G+ SYPRT + + ++
Sbjct: 271 PPNVPFDLGALQREAHNVFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVL 330
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
+ + ++ Y + +L R P G DD AHP IH + D KLY
Sbjct: 331 KNLSKNKEYSKYIELILSEG----RKPVDGKKDDPAHPAIHAVDVP--KENLPDDELKLY 384
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
EL+ R +A A + + + I GE F +G + + + ++Y F + + +PT
Sbjct: 385 ELIARRTIALYLDDAKREYSKISLEINGEPFKLNGSRTIEEGWHELYYFTKFDEIELPTL 444
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
+ + T+PP + A ++ ++K +GT AT D ++KL R Y I D
Sbjct: 445 KKKDLLRINEIAFEEKETKPPKRYTMASIIKELEKRTLGTKATRADILEKLTKRGYVIDD 504
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
+ T +G + E+ + L +E+ ++ + K V+ ++
Sbjct: 505 GS--LTVTELGIGVTETLRKFCPEIVEETLTRDLENKLELIQDKKIKKETVIKETKDKLT 562
Query: 599 ACFLDARLKKVKLLEAMGIFFERW-SGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLM 657
+ +LK+ E E+ S Q G+ +CG +M++ +++
Sbjct: 563 KILGEFKLKEK---EVGNELVEKLDSTNRSMQVIGKC--KCG----GDMIIIRTKGKKRF 613
Query: 658 VGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
VGC +P+C +P V C +C
Sbjct: 614 VGCSNYPECEITFPIPQK-GRIKVINEVCKTC 644
>gi|150402130|ref|YP_001329424.1| DNA topoisomerase I [Methanococcus maripaludis C7]
gi|150033160|gb|ABR65273.1| DNA topoisomerase I [Methanococcus maripaludis C7]
Length = 814
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 162/684 (23%), Positives = 292/684 (42%), Gaps = 48/684 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+VAK +A L K + + +N + + G+ ++++ S GHL
Sbjct: 4 LIICEKPNVAKKIAEALGKPK-------KKSHNSVPYYEVERSGE--NVIVASAVGHLYT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK---TLEEEARRCQWLVLWLDCDRE 127
L ++ K+ D+ P ++KK I+K L++ ++ + D D E
Sbjct: 55 LQ-EKTKTKFGDYPVYDIDWVPA--STLDEKKYIQKYIDALKKVSKEANKFYVATDWDIE 111
Query: 128 GENIAFEVIEV-CRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
GE I + + C N H R RFS+L +EI +A + + + DA D+R +ID
Sbjct: 112 GELIGYHALNFSCGQKNAH----RLRFSSLTKKEIVKAYETPNEIDFGLVDAGDSRHKID 167
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
G + +R + + R LS G Q P L F+V++ EI+ +W
Sbjct: 168 WYFGINVSRALMQAVSSVK-------RWKTLSTGRVQGPALAFLVDKEMEIKNFVPTPYW 220
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + E A + +D A +E + ATV+ V++ K P P
Sbjct: 221 VLE-ALLDNELIAIHELEK--FWDEEQANEAFEKVKGQKEATVSDVKKTMKSIPPNPPFD 277
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF-SSGTNLHGIVQEQIGHP 365
L++ A FR S + T ++A+ LY+ G+ SYPRT + + I++ +
Sbjct: 278 LGALQREAHNMFRFSPKKTQEIAQKLYEKGYCSYPRTSSQKLPDDKAYMDEILKNLSKNK 337
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
++ PY +R+L R P SG DD AHP +H + D KLYEL+ R
Sbjct: 338 NYKPYIERILSEN----RKPISGKKDDPAHPAVHAVDVP--KEHLPDDELKLYELIARRT 391
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
+A + + ++I GE F SG + + + ++Y + + + +P
Sbjct: 392 IALYWDNTEREYSKINLDINGEPFKLSGSRTVKEGWHEIYYYTKFDEIELPDLKEKDVIN 451
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ ++ T+PP + A ++ ++K +GT AT D ++KL R Y I+D +
Sbjct: 452 VNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYVIEDGS--LTV 509
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T++G + E+ + L +E ++ + K DV+ ++ + R
Sbjct: 510 TDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEDVITETQNKLTKILGEFR 569
Query: 606 LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
LK+ ++ + + S Q G+ +CG ++++ +++ VGC +P
Sbjct: 570 LKEKEIGNELVDKLD--STNRSLQIIGKC--KCG----GDLIIIRTKGKKRFVGCSNYPD 621
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSC 689
C LP V C +C
Sbjct: 622 CDVTFPLPQK-GRIKVLNEVCETC 644
>gi|47212929|emb|CAF90301.1| unnamed protein product [Tetraodon nigroviridis]
Length = 241
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 147/241 (60%), Gaps = 11/241 (4%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILSK Q R G+ +++ ++Y + + + G L
Sbjct: 4 VLMVAEKPSLAQSIAKILSKEQE-NSRAGKIIFSQFLIYSYCV----LFVCLKHRFGVLR 58
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
L+ +Y W DPA+L+ AP K K ++ K L+ EA+ C ++VLWLDCD+EG
Sbjct: 59 TLNSLSKYNNWDKVDPAELFSKAPTEKKEASPKLNMIKFLQAEAKGCHYVVLWLDCDKEG 118
Query: 129 ENIAFEVIEVC-RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
ENI FEVI V + + RA+FS++ D +I +A+ L +PN A AVDARQE+DL
Sbjct: 119 ENICFEVISVINKGSTREKSVYRAKFSSITDTDICKAMNCLGEPNHNEALAVDARQELDL 178
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E +W
Sbjct: 179 RIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPETYWI 234
Query: 248 I 248
+
Sbjct: 235 L 235
>gi|424813642|ref|ZP_18238830.1| DNA topoisomerase I, archaeal [Candidatus Nanosalina sp. J07AB43]
gi|339758588|gb|EGQ43843.1| DNA topoisomerase I, archaeal [Candidatus Nanosalina sp. J07AB43]
Length = 684
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 157/703 (22%), Positives = 288/703 (40%), Gaps = 66/703 (9%)
Query: 13 VAEKPSVAKSVAGIL-----SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
V EKP V +A L +N+G++ NY I +++ GH
Sbjct: 7 VGEKPKVTSKIANALGDYSMKENRGVK--------------NYIIETDERRLIVAPAVGH 52
Query: 68 LMELD----------FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQW 117
+ LD FD ++ D + Y ++K+ L ++ +
Sbjct: 53 IFNLDQVSEGWDYPVFDVEWKPTFETDDSAGY---MKKYY--------NNLRDQLEKADT 101
Query: 118 LVLWLDCDREGENIAFEVI-EVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
+ D D EG I VI ++ A + + R +FS L ++ A NL ++
Sbjct: 102 YINACDFDLEGSVIGANVIKQITDAPDEKI--ERMKFSTLTQSDLRDAYDNLESFDRGMT 159
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
A AR +D G + +R ++ +DR LS G Q PTL + ++ E
Sbjct: 160 SAGIARHILDYYYGVNVSRALMQAVRE-------NDRYKTLSTGRVQGPTLKVLADKEKE 212
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMR--GHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
I E + +W I H+ E + +++ A I+ E A V ++
Sbjct: 213 IMEFEPDPYWEITLQHQEFEAKFKDNEKEKPARIWEEDKANQIFSTVKGESKAKVRNIKV 272
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNL 354
PP P + L+K AS F +S + T +A+ LY+ ISYPRTE+
Sbjct: 273 NNYKHKPPIPFNLTGLQKEASSQFNLSPKKTQSIAQSLYEDSLISYPRTESQKLPPKLGY 332
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDH 414
++ + + A+++L G +D AHP IHPT S S+
Sbjct: 333 KNLLNKLKSQEKYEDLAKKVLKKEQSDNLYTRQGKKEDDAHPAIHPT--GKHPSNLSKME 390
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGL 473
K+Y+L+V+ F A + A + +++ G F +V +N+ ++Y + +
Sbjct: 391 KKVYDLIVKRFFAVFGEAAKRQSLTMTLDVLGYGFEAKSKVTKKRNWFNLYDPYVNVEEA 450
Query: 474 VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRF 533
+P G++ L T+PP S++ ++S ++K +GT AT I +L DR
Sbjct: 451 DLPEVEEGEKLEVNEFDLKDKETKPPRRYSQSRIVSELEKRNLGTKATRASTIDRLYDRN 510
Query: 534 YAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
Y I+++ + T++G +V + ++ L E M + G+K+ +V++
Sbjct: 511 Y-IEESPIKV--TDLGLTIVNTLEKHAPDVLSEELTRSFEQKMDSIRQGDKTSEEVVSEA 567
Query: 594 LQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRD 653
+++K + KK + + E + ++ + +C C++ + + K+ +
Sbjct: 568 QEELKDTL--NKFKK----DEQEVGAELVKTIDKERKRQRRLGECQECEDGTLKIIKN-N 620
Query: 654 GNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYL 696
G+ VGC +P C N+ LP S + C C +Y+
Sbjct: 621 GSRFVGCSNYPDCENSFPLP-SNGDINSMDEKCEECGNPKIYV 662
>gi|374636217|ref|ZP_09707796.1| DNA topoisomerase I [Methanotorris formicicus Mc-S-70]
gi|373559790|gb|EHP86074.1| DNA topoisomerase I [Methanotorris formicicus Mc-S-70]
Length = 759
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 165/690 (23%), Positives = 298/690 (43%), Gaps = 62/690 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKPSVAK +A L K + +S Y+ Y Y + +L S GHL
Sbjct: 4 LIICEKPSVAKKIAEALGKPKK------KSIYSVPY---YELERDGKKILAASAVGHLFT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIK---KTLEEEARRCQWLVLWLDCDRE 127
L +++ K+ D+ P + E KK ++ K L++ ++ + D D E
Sbjct: 55 L-VEKKEGKFGEYPVFDIDWVPA--SIEEGKKYVENYIKALKKLSKEADEFYVATDWDIE 111
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I + + C +R RFS+L +EI +A +N + DA D+R ++D
Sbjct: 112 GELIGYHALYYCCG---KTNAKRMRFSSLTKKEIIKAYENPDTIDFGLVDAGDSRHKVDW 168
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
G + +R ++ R +S G Q P L F+V+R EI+ + +W
Sbjct: 169 YFGINVSRALMEAIRAVK-------RWKTMSTGRVQGPALAFLVDRELEIKKFVPKPYWV 221
Query: 248 I-------NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
I N H+ E+ +D A +YE V V++++K
Sbjct: 222 ISALLDNLNAIHEKEK-----------FWDEKEANHVYEKIKDIKEGIVVGVKKRKKKIK 270
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN-LHGIVQ 359
P P L++ A ++ S + T +A+ LY+ G +SYPR+ + L ++
Sbjct: 271 PNPPFDLGTLQREAHSIYKFSPKKTQDIAQRLYERGIVSYPRSSSQKLPKDRKYLEDVLS 330
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
HP++G YA+R+L+ P G DD AHP IH + ++ K+Y+
Sbjct: 331 IIKNHPNYGKYAERILNENL----KPIEGKKDDPAHPAIHIVDIPKEKL--PEEEEKIYD 384
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
L+ R LA A V I+I GE F +G + + + ++Y F + + +P
Sbjct: 385 LIARRTLAAFWDDAEREYCNVTIDIGGEKFKLNGSRTVKEGWHEIYHFTRFDEVELPPLK 444
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
++ + ++ T+PP + A ++ ++ +GT AT + I KL+ R Y ++D
Sbjct: 445 KNEKIKVEKINIERKETKPPKRYTVASIIKELEARKLGTKATRAEIIDKLISRGYVVEDG 504
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
+ + T++G A++ E+ + +E ++ + G K +VL ++K
Sbjct: 505 SLKV--TDLGIAVIETLKKFCPEIIDEKMTRDLEEKLELIQNGKIKKDEVLNEAENKLKE 562
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
++ K+ + + + S + + G+ +CG ++V+ ++++ VG
Sbjct: 563 IL--SKFKEKEKEIGKELVSKIDSTNKKLKTIGKC--KCG----GDLVIIRTKNSRF-VG 613
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
C +P+C LP V TC SC
Sbjct: 614 CTNYPECNVTYSLPKK-GRIKVLNETCESC 642
>gi|320101228|ref|YP_004176820.1| DNA topoisomerase I [Desulfurococcus mucosus DSM 2162]
gi|319753580|gb|ADV65338.1| DNA topoisomerase I [Desulfurococcus mucosus DSM 2162]
Length = 691
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 158/597 (26%), Positives = 258/597 (43%), Gaps = 30/597 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL +AEKP A+ +A LS R R +YE N +L+ S GHL
Sbjct: 21 RVLVIAEKPKAARKIAEALSPGYVTR----RIGSIPVYEIN----AYGSMILVASSVGHL 72
Query: 69 MELDFDERYRKWHSCD--PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
EL+ + +S + P+ L + P ++H E + +KK R + V D D
Sbjct: 73 YELNTGVKGYPVYSYEWVPSHLVN-PGKRHAREYLEVLKKL----CRGVDYYVNACDYDI 127
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EG I + +I+ L RA+FS+L E+ QA NL + +A R E+D
Sbjct: 128 EGSVIGYLIIKFNGDEEKAL---RAKFSSLTREELRQAFNNLAKLDYEMIEAGLCRHELD 184
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
G + +R L+K ++ T R +VLS G Q PTL +VVE+ E +
Sbjct: 185 WLWGINVSR---ALMKA--VEDATG-RRIVLSAGRVQTPTLKYVVEKTVERNLFIPLPQY 238
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
+ + + + + + A I E ++ V +V + + PP P +
Sbjct: 239 RVTVTAERNGEEVVLEYAGNPVEKHGEARSIVERVRRQGYLIVEEVEGKTYVLKPPPPFN 298
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
+L++ A+R + S T +AE LY ISYPRT + N GI+
Sbjct: 299 LGDLQEEAARIYGFSPAKTQAIAEQLYLDALISYPRTNSQKLPPTLNYRGILDNLASIGK 358
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ LL G+ + P G +D AHP I+PT G + + + +Y+L+VR FL
Sbjct: 359 YSGLVASLLSETRGVLK-PVEGEKEDPAHPAIYPTGMKPGG--LTDEQWAVYDLIVRRFL 415
Query: 427 ACVSQPAVGAETIVEINIAGE--VFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
A +QPA V+ VF S + + + ++ Y F ++ P V G +
Sbjct: 416 AVFAQPARLTHYTVKAVTPSRDAVFKASWQRVEEQGWMKYYGFHTYKSSRAPGLVKGDKL 475
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+++ T+PP LS+ D+L M+ IGT+AT I+KL +R Y ++
Sbjct: 476 GVVKVSMRESYTKPPKRLSKIDVLRWMESVEIGTEATRAQIIEKLFERKYLFLESKG-IG 534
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+++G +V + +L L E +M + G +S+ VL + + A
Sbjct: 535 VSDLGFGVVEVVERFFPDLLSIELTRRFEKEMDAIRRGLRSRGQVLEEAKRILTAML 591
>gi|56420223|ref|YP_147541.1| DNA topoisomerase III [Geobacillus kaustophilus HTA426]
gi|56380065|dbj|BAD75973.1| DNA topoisomerase III [Geobacillus kaustophilus HTA426]
Length = 697
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 179/616 (29%), Positives = 277/616 (44%), Gaps = 79/616 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L Q + +E I +T GH
Sbjct: 1 MKSLVLAEKPSVARDIARVLGCKQA---------HKHYFEGKQHI--------VTWALGH 43
Query: 68 LMELDFDERY-RKWHSCDPADLYHAPVRKHVPEDKKDIKKT------LEEEARR--CQWL 118
L+EL E Y RK+ + DL P + + K I++T +E A+R + +
Sbjct: 44 LVELKMPEDYDRKYETWRLEDLPIIPKKMGL----KVIRQTSHQFRAIERLAKRPDVKDV 99
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL---VDPNQWF 175
++ D REGE +A ++E+ + + R S+ DR I + L V + +
Sbjct: 100 IIATDAGREGELVARWILEM---IGWTKPIWRLWISSQTDRAIRDGFRQLKPGVQFERLY 156
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
AV R E D IG + +R ++T N LS G Q PTL ++ER
Sbjct: 157 QSAV-CRAEADWLIGLNVSR------------ALTTKYNDPLSAGRVQTPTLAMIIERER 203
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMR--GH-LFDYTSAVIIYEMCVQEPTATVTKV 292
EIQ+ +WTI +++ G+ T W R GH LFD A + +P A VT +
Sbjct: 204 EIQSFVPVPYWTI----RAKIGSITAVWERHGGHRLFDQDEANRLMTRLKGQP-ARVTSI 258
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSS- 350
+++ K + P P EL++ A++ F S++ T+ V + LY Q ++YPRT++ S
Sbjct: 259 KRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDSRYLPSD 318
Query: 351 --GTNLHGIVQEQIGHPD-WGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSS 405
T ++ + G+ D P + AA N DDK H I PT
Sbjct: 319 MEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFN------DDKVTDHHAIVPTDERL 372
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
SR S D KLY+L+ R FLA P T +I GE F ++ + V
Sbjct: 373 NLSRLSTDERKLYDLIARRFLALFYPPHESETTTAVFDIGGETFVAKETAVVNAGFQAVL 432
Query: 466 RFESWGGLVIPTYVH---GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
E PT +H GQ L L+ T PP SEADLL+ M+K G+GT AT
Sbjct: 433 SKED--NKAQPTLLHLAEGQTLPSVQLELEQSFTEPPARYSEADLLAQMEKYGLGTPATR 490
Query: 523 HDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
D I++L++ ++ + RF PT G+ L+ + + EL P L + E +++ ++ G
Sbjct: 491 ADIIERLVE-TEVVERKDGRFYPTKKGKQLI---ELVNEELKSPELTARWERELEAIARG 546
Query: 583 NKSKADVLANCLQQMK 598
+ LAN +Q +
Sbjct: 547 KGNPQQFLANIRRQTQ 562
>gi|170289862|ref|YP_001736678.1| DNA topoisomerase I [Candidatus Korarchaeum cryptofilum OPF8]
gi|170173942|gb|ACB06995.1| DNA topoisomerase I [Candidatus Korarchaeum cryptofilum OPF8]
Length = 710
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 170/670 (25%), Positives = 291/670 (43%), Gaps = 60/670 (8%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L + EKP+VAK +A ILS+ + REG K+Y + + G+ + GH
Sbjct: 1 MTTLILTEKPNVAKRIASILSEGAKAK-REG-----KVYYYEFDTGGE--RYYVAPAAGH 52
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L+ELD+ ++ S P + V K + + K++ K LE+ + +++ D D E
Sbjct: 53 LLELDYPPGKWEYPSIVPPERL---VLKEI-KGKREYLKILEKLGKLSNRIIVATDLDSE 108
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
G +IA E+I+ ++ R FS+L EI + ++L + A A R+ IDL
Sbjct: 109 GSSIALEIIKALNWEGKEIL--RMEFSSLTKEEIRSSFRDLKPFDYPRAYAGWVRRVIDL 166
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
GA+ +R T+ + VLS G Q PTL +V+R EI+ ++++T
Sbjct: 167 EWGANVSRGLTLSTRR-------KGWVRVLSSGRVQGPTLSMIVKREREIREFVPKKYYT 219
Query: 248 INCSHKSEEG-TATFSWMRGH--LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+ K ++G + + +G ++D A E + +V+ E+ PP P
Sbjct: 220 VIV--KVDKGFSLELAPPKGEERIWDQDYARRAAESV---KDTLIARVKSDERKLSPPPP 274
Query: 305 LSTIELEKRASRYF----RMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
L+ S R ++ T +A+ LY+AG ISY TE+ + V
Sbjct: 275 FDGTSLQVEVSAITGLTPRQIADRTSGIAQKLYEAGLISYIGTESQKYPKSWKKKDFVDM 334
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
+ P + + G DD AHP IH E R + ++YE+
Sbjct: 335 VKLIASYSPLKEEAEFVLGDMREAAVEGKKDDPAHPTIHVVGVP--EERLEGKYREVYEI 392
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY---RFESWGGLVIPT 477
+ R LA ++Q A+ VE N+ G +F SG +L + +L VY R E + P
Sbjct: 393 IARRNLATLAQDALIKRIRVESNVDGFIFRASGLSVLREGWLRVYPYARMEEF-----PE 447
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
++ + ++ T+PP S L+ M++ G+GT T I L R Y +
Sbjct: 448 VEDSEELRVVEVKIEEKETQPPKRYSHISLIKEMERLGLGTKNTRVQIIDILKSRGYLEE 507
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
+ F PT +GEA+V + L P L + +E M E+ +G ++ L L ++
Sbjct: 508 GS---FKPTRLGEAIVEVLESFVPALTNPELTAKLERGMNEIELGKLDPSNFLKESLDEL 564
Query: 598 KACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQE--SNMVLKKSRDGN 655
A + + ++K+ E + + G G C E ++ ++KS G
Sbjct: 565 SAIMDEFKRNELKISERLYEGLREYRSG-----------SLGKCPECGGDLNMRKSSYGY 613
Query: 656 LMVGCLAFPQ 665
+V C +P+
Sbjct: 614 FIV-CSNYPE 622
>gi|448237916|ref|YP_007401974.1| DNA topoisomerase III [Geobacillus sp. GHH01]
gi|445206758|gb|AGE22223.1| DNA topoisomerase III [Geobacillus sp. GHH01]
Length = 697
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 181/617 (29%), Positives = 278/617 (45%), Gaps = 81/617 (13%)
Query: 8 INVLNVAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+ L +AEKPSVA+ +A +L K EG RY ++T G
Sbjct: 1 MKSLVLAEKPSVARDIARVLGCKETHQSYMEG-PRY-----------------IVTWALG 42
Query: 67 HLMELDFDERY-RKWHSCDPADLYHAPVRKHVPEDKKDIKKT------LEEEARR--CQW 117
HL+EL E Y RK+ + DL P + + K I++T +E A+R +
Sbjct: 43 HLVELKMPEDYDRKYETWRLEDLPIIPKKMGL----KVIRQTSHQFRAIERLAKRPDVKD 98
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--- 174
+++ D REGE +A ++E+ + + R S+ DR I + L Q+
Sbjct: 99 VIIATDAGREGELVARWILEM---IGWTKPIWRLWISSQTDRAIRDGFRQLKPGAQFDRL 155
Query: 175 FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
+ AV R E D IG + +R ++T N LS G Q PTL ++ER
Sbjct: 156 YQSAV-CRAEADWLIGLNVSR------------ALTTKYNDPLSAGRVQTPTLAMIIERE 202
Query: 235 WEIQAHESEEFWTINCSHKSEEGTATFSWMR--GH-LFDYTSAVIIYEMCVQEPTATVTK 291
EIQ+ +WTI +++ G+ T W R GH LFD A + +P A V
Sbjct: 203 REIQSFVPVPYWTI----RAKIGSITAVWERHGGHRLFDQDEAKQLLARLDGQP-ARVVS 257
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSS 350
V+++ K + P P EL++ A++ F S++ T+ V + LY Q ++YPRT++ S
Sbjct: 258 VKRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDSRYLPS 317
Query: 351 ---GTNLHGIVQEQIGHPD-WGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFS 404
T ++ + G+ D P + AA N DDK H I PT
Sbjct: 318 DMEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFN------DDKVTDHHAIVPTDER 371
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV 464
SR S D KLY+L+ R FLA P T +I GE+F ++ + V
Sbjct: 372 LNLSRLSTDERKLYDLIARRFLALFFPPYESETTTAVFDIGGEMFVAKETAVVNAGFQAV 431
Query: 465 YRFESWGGLVIPTYVH---GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDAT 521
E PT +H GQ L L+ T PP SEADLL+ M+K G+GT AT
Sbjct: 432 LSKED--NKAQPTLLHLAEGQTLPSVQLELEQSFTEPPARYSEADLLAQMEKYGLGTPAT 489
Query: 522 MHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSV 581
D I++L++ ++ + RF PT G+ L+ + + EL P L + E +++ ++
Sbjct: 490 RADIIERLVE-TEVVERKDGRFYPTKKGKQLI---ELVNEELKSPELTARWERELEAIAR 545
Query: 582 GNKSKADVLANCLQQMK 598
G + LAN +Q +
Sbjct: 546 GKGNPQQFLANIRRQTQ 562
>gi|312136406|ref|YP_004003743.1| DNA topoisomerase i [Methanothermus fervidus DSM 2088]
gi|311224125|gb|ADP76981.1| DNA topoisomerase I [Methanothermus fervidus DSM 2088]
Length = 705
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 163/686 (23%), Positives = 287/686 (41%), Gaps = 53/686 (7%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+N + + EKP A+ +A N + + N Y + I+ +L+ GH
Sbjct: 4 VNEVIICEKPQAAEKIA-----NSLSSSTKKKKYKNVPY---WEIKKTDKKILVVPAVGH 55
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK---TLEEEARRCQWLVLWLDC 124
L L + + + DL PV V + +K IK +++ ++ + D
Sbjct: 56 LYTLAPSNKKKDYF----FDLEWTPVY-LVDKKRKYIKNYIDAIKKLGKKADRYIHACDY 110
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
D EG I + V+ C R +FS L R+I +A +NL + + R
Sbjct: 111 DIEGTLIGYNVLRYCIGKKSLKKSLRMKFSTLTKRDIRKAYENLTSIDYGQVNGGITRHF 170
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + +R ++N + + + LS G Q PTL +V+R EI+ + +
Sbjct: 171 LDFLFGVNISRALMNSIQN------STKKFVKLSAGRVQTPTLSILVDREREIKKFKPKT 224
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W I K++ TA F + +FD A+ I + C + A V V+ ++ + PP P
Sbjct: 225 YWVIEA--KTKFFTAKFKEQK--IFDKNKALKIVKEC-KNKNAIVKSVKITKRYRNPPVP 279
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
L+ A R F S T +A++LY G+ISYPRT + + I + +
Sbjct: 280 FDLTTLQSEAYRLFGFSPRKTQSLAQNLYLGGYISYPRTSSQKLPPSIDYEKIFEGLSKN 339
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
P + Y +L P G D+AHP IHPT ++D KLYEL+V
Sbjct: 340 PKFERYISKLSKPF-----KPYEGKKTDEAHPAIHPT--GVMPKNLNEDESKLYELIVHR 392
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
F+A + A A ++I F + + I+ + ++ Y + S P G +
Sbjct: 393 FIAVFADKAKIANLRGVLSINDYEFIFNKQKIIKEGWMSFYPYTSVKNEEFPEIKEGDKL 452
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFA 544
+ + T+PP + A L+ M+ G+GT +T + I L DR Y I+ +
Sbjct: 453 KIEKIIKEEKKTKPPARYTAASLIKEMEVRGLGTKSTRAEIISALYDRKY-IEGRKIKVK 511
Query: 545 PTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604
P +G ++ ++ L E +K + G +K +V+ ++K
Sbjct: 512 P--LGIKIINILKKYCKKITSEKLTREFEKKIKRIIKGEINKENVITEAKNEVKDILNSI 569
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRD-GNLMVGCLAF 663
K+ ++ E E ++ + + G+ +CG N++++ S+ VGC +
Sbjct: 570 EDKQKEIGE------ELYNAYKKSKIIGKC--KCG----GNLIIRYSQKYKKRFVGCSNY 617
Query: 664 PQCRNAVWLPGSVSEAAVTTNTCNSC 689
P C+ LP + A + + C C
Sbjct: 618 PACKVTYSLPKN---AIILESKCKRC 640
>gi|354585654|ref|ZP_09004487.1| DNA topoisomerase III [Paenibacillus lactis 154]
gi|353184667|gb|EHB50192.1| DNA topoisomerase III [Paenibacillus lactis 154]
Length = 712
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 162/608 (26%), Positives = 276/608 (45%), Gaps = 78/608 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPSVAK +A R+ R ++ +E + +T GH
Sbjct: 1 MKVLVLAEKPSVAKEIA---------RVMGSREKHKSYFEGPKYV--------VTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPA---DLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
L+ L D+D++Y+ W D D V + K+++ ++ + L++
Sbjct: 44 LIGLAEPEDYDKKYQTWALEDLPILPDSMRLKVLRETSHQYKNVQHLMKRQD--IGELII 101
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---D 177
D REGE +A ++++ + + +R S+ D+ I + +L P Q F +
Sbjct: 102 ATDAAREGELLARWILKMAK---WNKPFKRLWISSQTDKAIKEGFASL-KPGQQFDRLYE 157
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
+ R E D +G + TR ++T N LS G Q PTLG +++R EI
Sbjct: 158 SARCRAEADWMVGLNVTR------------ALTTKFNAQLSAGRVQTPTLGMIMDREKEI 205
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
S+E+ T+ S E + + G LF+ A + + ++ + + V++ EK
Sbjct: 206 INFRSQEYETLQVDLGSFEASWRAAGGDGRLFEKERAAKLKQK-LEGASGKIVSVKKSEK 264
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHG 356
+ P EL++ A+R F S++ T V + LY Q ++YPRT++ +S ++ G
Sbjct: 265 NEPHPLAYDLTELQRDANRRFGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLTS--DMVG 322
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWR---NPGSGGHDDKA---HPPIHPTKFSSGESRW 410
++E++ GPYA A L R +PG DD H I PT+ + ++
Sbjct: 323 TLKERLSSIAVGPYAA----LARPLLRKSLSPGKRVVDDSKVTDHHAIIPTEQTVLLNQL 378
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY----- 465
+ D KLY+L+VR F++ PA + V + I GE F G + + +VY
Sbjct: 379 TADERKLYDLIVRRFISLFYPPARYDQVAVTVQIEGETFHAKGTTVKDSGWREVYGGDYD 438
Query: 466 ----------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
+ + GG ++P GQ L G T+PP +EA LLS M+K G
Sbjct: 439 DDADGEDDDAQGSAPGGKLLPELKEGQPVKVARCILKPGRTQPPKRYTEAALLSQMEKHG 498
Query: 516 IGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESD 575
+GT AT D I+KL+ I+ + PT G+ L+ + + EL P L + E++
Sbjct: 499 LGTPATRADIIEKLVSSD-TIERQGSSLHPTGKGKQLI---ELVAPELRTPELTARWEAE 554
Query: 576 MKEVSVGN 583
++ ++ G
Sbjct: 555 LERIAKGQ 562
>gi|15896200|ref|NP_349549.1| DNA topoisomerase III [Clostridium acetobutylicum ATCC 824]
gi|337738155|ref|YP_004637602.1| DNA topoisomerase III [Clostridium acetobutylicum DSM 1731]
gi|384459666|ref|YP_005672086.1| DNA topoisomerase III [Clostridium acetobutylicum EA 2018]
gi|15025999|gb|AAK80889.1|AE007791_9 Topoisomerase B [Clostridium acetobutylicum ATCC 824]
gi|325510355|gb|ADZ21991.1| DNA topoisomerase III [Clostridium acetobutylicum EA 2018]
gi|336293258|gb|AEI34392.1| DNA topoisomerase III [Clostridium acetobutylicum DSM 1731]
Length = 728
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 169/620 (27%), Positives = 277/620 (44%), Gaps = 98/620 (15%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKPSVA+ +A +L N + ++Y I+ GHL+
Sbjct: 4 ILVLAEKPSVARDLAKVLKANINKKTHLEGNKYVVIWAL-----------------GHLV 46
Query: 70 EL----DFDERYRKWHSCD-----PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
L + E+Y+KW S D P ++ V K+ + DIKK +E + LV+
Sbjct: 47 SLADPESYGEKYKKW-SMDTLPMLPKNM-KLSVLKNTSKHFYDIKKVMER--KDLDELVI 102
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FADA 178
D REGE +A +IE+ + ++R S+ DR + +L D + +
Sbjct: 103 ATDAGREGELVARWIIEMAK---WKKPIKRLWISSQTDRAVRDGFAHLRDGRDYENLYKS 159
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
R E D +G + TR ++T N LS G Q PTL +V R EI+
Sbjct: 160 AKCRSEADWFVGLNVTR------------ALTCKYNAQLSAGRVQTPTLYMIVSREEEIR 207
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRG----HLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
+ ++++TI KS + +W +F+ A I E V+ + V +
Sbjct: 208 KFKPKDYYTIEGKVKS----FSMNWHDKSGDFKIFNKERAEKI-EALVKGSKGKIVDVSE 262
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTN 353
+K KY P EL++ A+R+F S++ T+ + + LY+ ++YPRT DS +
Sbjct: 263 SKKKKYSPALYDLTELQRDANRFFGFSAKETLSIMQRLYENHKLLTYPRT--DSRYIPHD 320
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWR---NPGSGGHDDKA---HPPIHPTKFSSGE 407
+ + +++ G Y++ AA + R N G DD H I PT+
Sbjct: 321 VVATLPDRLRAISIGKYSK----FAAEILRSKINVHKGFVDDSKVTDHYAIIPTEERPAL 376
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-- 465
S + +K+Y+LVV+ FL+ + P +T V+ +AGE+F G+V+ +K + +VY
Sbjct: 377 GALSNEEFKIYDLVVKRFLSIMLPPFEYIQTTVKAEVAGEIFIAKGKVVKSKGWKEVYDK 436
Query: 466 --RFESWGGL---VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK------- 513
FE L ++P G+ +T+++ G T+PP +EA LLS M+
Sbjct: 437 TEDFEEKSELKDQMLPEMNKGEDITFSTVSIKKGQTKPPSRFTEATLLSAMENPQRYVSM 496
Query: 514 -----------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYE 562
G+GT AT D I+KL FY K N PT+ G+ LV + + +
Sbjct: 497 DKISAKTLGETGGLGTVATRADIIEKLYKTFYIEKKGN-EIVPTSKGKQLV---NLVPSD 552
Query: 563 LWKPNLRSMMESDMKEVSVG 582
L P L + E + +S G
Sbjct: 553 LKSPLLTAKWEGQLDAISKG 572
>gi|319653386|ref|ZP_08007486.1| DNA topoisomerase [Bacillus sp. 2_A_57_CT2]
gi|317394870|gb|EFV75608.1| DNA topoisomerase [Bacillus sp. 2_A_57_CT2]
Length = 697
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 167/612 (27%), Positives = 262/612 (42%), Gaps = 76/612 (12%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPSVA+ +A +L Q + +Y ++T GHL+E
Sbjct: 4 LVLAEKPSVAREIARVLGCRQSHKSYMEGDKY-----------------IVTWALGHLIE 46
Query: 71 LD----FDERYRKWHSCD---PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQWLVLW 121
L +D +Y+ W+ D D V K K I E A+R + +++
Sbjct: 47 LKMPEHYDTKYKNWNLEDLPIIPDQMGLKVMKQTSHQYKAI----ENLAKRKDIKEIIIA 102
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
D REGE +A ++E R ++R S++ DR I QNL P + F D ++
Sbjct: 103 TDAGREGELVARWILEKIR---WRKTIKRLWISSVTDRAIRDGFQNL-KPGKQFEDLYES 158
Query: 182 ---RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
R E D IG + TR T K+ LS G Q PTL V+ER IQ
Sbjct: 159 AVCRAEADWLIGLNVTRALTTKYKD------------PLSAGRVQTPTLALVMEREALIQ 206
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRG---HLFDYTSAVIIYEMCVQEPTATVTKVRQQ 295
+E+WTI +S+ W + +F +A + V+ A + + ++
Sbjct: 207 KFVPKEYWTI----RSQIAPLQADWEKNGEKRIFSKEAADEVLSK-VKGQKAVIHSIIRK 261
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTN- 353
EK + P P EL++ A++ + S++ T V + LY Q ++YPRT++ +
Sbjct: 262 EKTEPQPLPYDLTELQRDANKRYGFSAKKTSNVLQKLYEQHKLVTYPRTDSRYLTKDMEA 321
Query: 354 -----LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGES 408
LHGI + + +L + + H I PT+ S
Sbjct: 322 TMMDRLHGIA------ASYKDEVKPILANQGKVLAKRVFNNEKVTDHHAIIPTEERVHLS 375
Query: 409 RWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF- 467
S D KLYEL++R FLA P I + E F+ ++ Y V R
Sbjct: 376 DLSADERKLYELILRRFLAIFHNPYKYETIHASIEVNSETFTARETAVIDLGYRKVERSS 435
Query: 468 -ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHI 526
E G + GQ F T L + +T PP SEAD+L+ M+K +GT AT + I
Sbjct: 436 DEETGKQSLKNISKGQSFTVQTAELSAKLTEPPLRYSEADILTQMEKYSLGTPATRAEII 495
Query: 527 KKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
++LLD AI+ N R PT G+ L+ D + +L P L + E ++++++ G
Sbjct: 496 ERLLD-TEAIERQNGRLFPTKKGKQLM---DLVNEDLKSPELTAKWEQELEKIARGKADP 551
Query: 587 ADVLANCLQQMK 598
+ L N +Q +
Sbjct: 552 KEFLQNIRKQTR 563
>gi|324519767|gb|ADY47473.1| DNA topoisomerase 3 [Ascaris suum]
Length = 200
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 124/199 (62%), Gaps = 2/199 (1%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-CHMLMTSVTG 66
+ L VAEK AKS+A ILS+ R R+ RS+YNKIY+FN S+ + C + +TSV G
Sbjct: 2 MRALFVAEKNDAAKSIAAILSRGASAR-RDSRSKYNKIYQFNASLLNESNCAVAVTSVAG 60
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
HL++ F + Y+ W A L+ APV K V + I++TL EE R LV+W DCDR
Sbjct: 61 HLLQHRFPDAYKSWTETPMASLFSAPVLKGVIVGMEPIRETLIEETRLSDVLVIWTDCDR 120
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE I EV VC +V ++ + RARFS + I AV NL ++ DAV+ R E+D
Sbjct: 121 EGEGIGAEVASVCLSVKPNMPVYRARFSEITASAIWHAVNNLGRLDRRVVDAVECRSELD 180
Query: 187 LRIGASFTRFQTMLLKNFH 205
LRIGA+FTR QT+ L++F+
Sbjct: 181 LRIGAAFTRLQTLHLRSFY 199
>gi|390938860|ref|YP_006402598.1| DNA topoisomerase I [Desulfurococcus fermentans DSM 16532]
gi|390191967|gb|AFL67023.1| DNA topoisomerase I [Desulfurococcus fermentans DSM 16532]
Length = 678
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 157/587 (26%), Positives = 255/587 (43%), Gaps = 32/587 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKP AK +A LS ++ R IYE + +++ S GHL
Sbjct: 14 ILVIAEKPKAAKKIASALSPTHTMK----RIGSITIYEVD----SYSSSIIIASSVGHLY 65
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL---DCDR 126
+L R +S + L+ A KK I++ LE + C+ + ++ D D
Sbjct: 66 QLHTSLRGYPVYSYEWIPLHLAD------PSKKYIREYLEVLGKLCRGVDYYVNACDYDI 119
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EG I + +I+ RARFS+L E+ +A NL + +A R E+D
Sbjct: 120 EGSVIGYLIIKFNGDERKAF---RARFSSLTIEELRKAFNNLTRLDYEMIEAGLCRHELD 176
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
G + +R L+K D+V + ++LS G Q PTL +VV++ E +
Sbjct: 177 WIWGINVSR---ALMKAVE-DAVGE--KIILSAGRVQTPTLKYVVDKVIERNLFIPLPQY 230
Query: 247 TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLS 306
IN + + + + A I E V+KV ++ + +PP P +
Sbjct: 231 NINITVEKNGEKIRLEYTGNPVEKERDARNIVEKIRGYKYLIVSKVEKKHHILHPPPPFN 290
Query: 307 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPD 366
+L+K A+R + S T +AE LY ISYPRT + + I+
Sbjct: 291 LGDLQKEAARLYGFSPAETQSIAEQLYLDALISYPRTNSQKLPPTLDYRRILGNISSIKS 350
Query: 367 WGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFL 426
+ + L+ G+ P G +D AHP I+PT G R ++ + +Y+L+V+ FL
Sbjct: 351 YRNLVESLISETKGVL-TPVEGEKEDPAHPAIYPTGVVPG--RLTEKQWAIYDLIVKRFL 407
Query: 427 ACVSQPAVGAETIVEINIAGE--VFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQF 484
A + PA +V+ VF T G+VI +L Y F ++ IP G+
Sbjct: 408 AVFAPPAKIVHYVVKAATPSHEYVFETKGQVIEEYGWLKYYNFHNYHAGKIPVLKEGELL 467
Query: 485 IPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR-F 543
T+ T+PP L++ DLL M+ IGT+AT I+KL +R Y + +
Sbjct: 468 NIVKATVSESYTKPPKRLTKTDLLRWMESVEIGTEATRAQIIEKLFERKYLYQHRKSSGI 527
Query: 544 APTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
+ IG +V + +L L E +M + G K +++VL
Sbjct: 528 DVSEIGFGVVEILEKFFPDLLSVELTRKFEKEMDNIRSGVKKRSEVL 574
>gi|325958291|ref|YP_004289757.1| DNA topoisomerase i [Methanobacterium sp. AL-21]
gi|325329723|gb|ADZ08785.1| DNA topoisomerase I [Methanobacterium sp. AL-21]
Length = 775
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 140/584 (23%), Positives = 243/584 (41%), Gaps = 42/584 (7%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP 171
++ V D D EG I + ++ N R +FS L + +I A + ++
Sbjct: 95 SKNADRFVHACDYDIEGTLIGYNALKYACGENSLDNAVRMKFSTLTNEDITAAYEKPLNI 154
Query: 172 NQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSV--TDDRNLVLSYGPCQFPTLGF 229
+ D+ AR +D G + ++ T +SV T R + LS G Q PTL
Sbjct: 155 DFNQVDSGIARHVLDFLFGVNISKSLT--------ESVMETTKRYIQLSAGRVQTPTLAI 206
Query: 230 VVERYWEIQAHESEEFWTINCSHKSE--EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTA 287
+VER EIQ E +W I + T G +FD A I+ C A
Sbjct: 207 LVEREKEIQKFIPEPYWMIKADLDVPGIDELVTADHKAGKIFDKNVADEIFADC-DGKNA 265
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDS 347
V + +E +K PP+P L+ A F S + T ++A++LY GF SYPRT +
Sbjct: 266 VVDGIDVRETVKAPPFPFDLGSLQSEAYAVFGFSPKKTQQIAQNLYTEGFTSYPRTSSQK 325
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWR--NPGSGGHDDKAHPPIHPTKFSS 405
+ I+++ Y+ + A L + P G D AHP IHPT
Sbjct: 326 LPKSIGVDKILKKL-------SYSGSFRNQIAKLKKPYKPNEGKKTDAAHPAIHPTGVIP 378
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
E S D KLYEL+ F++ + + + I + FS S + + ++++
Sbjct: 379 KE--LSTDDRKLYELITYRFISVFGENGLLESMKTSLKIGDQDFSFSRKRMAKLGWMELT 436
Query: 466 RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
F+ PT + + + + T+PP ++A L+ ++K G+GT +T +
Sbjct: 437 PFKKAENDSFPTISKDDELLVEAVRSEEKETKPPARYNQASLIRELEKRGLGTKSTRANI 496
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
I L DR + + +GE L+ + ++ + E+ ++++ G+ +
Sbjct: 497 ISILYDRKFV---EGKKIKVNELGEHLIDTLKEYSNKITSEEMTREFETRLEDIIEGSVN 553
Query: 586 KADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESN 645
K +++ ++ + D K + E + + + + G+ +CG N
Sbjct: 554 KDNIIEEAKIELTSILDDIDKNKAVIGEQL------YKSYRESRVVGKC--KCG----GN 601
Query: 646 MVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
+VL S N VGC +P+C++ LP A + TC C
Sbjct: 602 LVLIDSPRSNSFVGCSGYPECKSTFSLPRG---ATILKTTCEEC 642
>gi|329926148|ref|ZP_08280739.1| DNA topoisomerase [Paenibacillus sp. HGF5]
gi|328939422|gb|EGG35776.1| DNA topoisomerase [Paenibacillus sp. HGF5]
Length = 712
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 167/633 (26%), Positives = 283/633 (44%), Gaps = 84/633 (13%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPSVAK +A ++ RE + Y + ++ ++T GH
Sbjct: 1 MKVLVLAEKPSVAKEIARVMGS------REKQKNYFEGPKY-----------IVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQW--LVLW 121
L+ L D+D++Y+ W + + + R V ++ KT++ +R +++
Sbjct: 44 LVGLAEPEDYDKKYQTW-ALEDLPILPDNTRLKVLKETSHQFKTVQHLMKRSDVGEMIIA 102
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---DA 178
D REGE +A ++++ + + +R S+ D+ I + +L P Q F ++
Sbjct: 103 TDAAREGELLARWILKMAK---WNKPFKRLWISSQTDKAIKEGFASL-KPGQQFDRLYES 158
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
R E D +G + TR ++T N LS G Q PTLG +++R EI
Sbjct: 159 ARCRAEADWMVGLNVTR------------ALTTKFNAQLSAGRVQTPTLGMIMDREKEIV 206
Query: 239 AHESEEFWTINCSHKSEEGTATFSWM----RGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
S+E+ T+ +++ G+ SW G LF+ A + + ++ T + V++
Sbjct: 207 NFRSQEYETL----QADLGSFEVSWRPAGGDGRLFEKDKAAKLKQK-LEGSTGKIVSVKK 261
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTN 353
EK + P EL++ A+R F S++ T V + LY Q ++YPRT++ +S +
Sbjct: 262 SEKTEPHPLAYDLTELQRDANRRFGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLTS--D 319
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWR---NPGSGGHDDKA---HPPIHPTKFSSGE 407
+ G ++E++ GPYA A L R +PG DD H I PT+ +
Sbjct: 320 MVGTLKERLSSIAIGPYA----SIARPLLRKNLSPGKRVVDDSKVTDHHAIIPTEQTVLL 375
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
++ S D KLY+L+VR F++ PA V + I GE G I + +VY
Sbjct: 376 NQLSVDERKLYDLIVRRFISLFYPPARYDNVAVTVQIEGEQLYAKGTTIKESGWREVYGG 435
Query: 468 E---------------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD 512
+ S G ++P G+ L G T+PP +EA LLS M+
Sbjct: 436 DYEDDTDDESDEGQGPSSSGKLLPELKEGESVKVVRCVLKPGRTQPPKRYNEAALLSQME 495
Query: 513 KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMM 572
K G+GT AT D I+KL+ + T PT G+ L+ + + EL P L +
Sbjct: 496 KHGLGTPATRADIIEKLVSSDTIERQGQT-LHPTGKGKQLI---ELVAPELRTPELTARW 551
Query: 573 ESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
E++++ ++ G L K D +
Sbjct: 552 EAELERIAKGQGKPEPFLLGIRDMTKKLVTDVK 584
>gi|406994191|gb|EKE13214.1| hypothetical protein ACD_13C00052G0003 [uncultured bacterium]
Length = 654
Score = 166 bits (419), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 162/641 (25%), Positives = 279/641 (43%), Gaps = 124/641 (19%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
KKDI K L+ E ++ + + L D DREGE IA V E+ +N ++R F +
Sbjct: 58 KKDIIKNLKTEGKKAKIVYLATDPDREGEAIAEHVAEI---LNADSKIKRIVFHEITKEA 114
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
+ +A+QN + ++ DA AR+ +D +G + +L K LS G
Sbjct: 115 VEKAIQNPREVDKNLVDAQIARRVLDRLVG---YKLSPLLWKKIRRG---------LSAG 162
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSE-EGTATFSWMRGHLFDYTSAV---- 275
Q + +VE+ EI+A +SEE+W I K E + F + + T+ V
Sbjct: 163 RVQSVAVKLIVEKEREIKAFKSEEYWEIYSKVKGERQEIKDFDIELVKINEKTAEVKNKK 222
Query: 276 ----IIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAED 331
I+ ++ ++ TV VR++E K P P +T + + ASR F SS+ TM +A+
Sbjct: 223 DADGIVSDL--EKAKYTVFDVRKKEVSKNPYPPFTTSTMTQAASRIFGWSSKRTMSIAQK 280
Query: 332 LYQAGFISYPRTETDSFSSGT--NLHGIVQEQIGH---PDWGPYAQRLLDHAAGLWRNPG 386
LY+ G I+Y RT++ + SS + ++++ G PD P A + A
Sbjct: 281 LYEEGLITYHRTDSFNLSSQAVDTVRKYIEKEFGRNYLPD-TPRAYKTQSKVA------- 332
Query: 387 SGGHDDKAHPPIHPTKFSS----GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
+AH I PT +S + +W D LY+L+ F+AC P++ ET++++
Sbjct: 333 -----QEAHEAIRPTNINSKLQIADDKWGHDEETLYKLIWSRFIACQMNPSLYDETVIDV 387
Query: 443 NIA-GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGV------ 495
A G +G I+ +F+ W ++ IP L +DS V
Sbjct: 388 AAAPGNYLLRAGGQIM--------KFDGW-----------RKVIPAKLEVDSVVKLPEVS 428
Query: 496 ----------------TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
T+PP +EA L+ ++K GIG +T I + R Y ++
Sbjct: 429 KDEKLDHIKTWGEQKFTQPPARYNEASLIKTLEKLGIGRPSTYAPTISTIQIRNY-VEKT 487
Query: 540 NTRFAPTNIGEA----LVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
+F PT+IGEA LV + D +++ + ME + +V+ G ++ + +
Sbjct: 488 EGKFFPTSIGEAVTDFLVKNFTD----IFEYEFTAGMEDSLDKVANGEAKWTGIIKDFYK 543
Query: 596 QM--KACFLDARLKKVKL-LEAMGIFFERWSGGE----------------------DQQA 630
K +D + ++VK+ E +G GE ++
Sbjct: 544 PFASKIGIVDKKAERVKIETEKLGKKCPECKEGELVIRIGRFGKFISCSRFPDCKYTEKY 603
Query: 631 AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVW 671
+V +C C+ ++++KK+ G GC +P+C+ A W
Sbjct: 604 LEKVGVKCPECKIGDVIVKKTSKGRKFFGCSRYPECKYASW 644
>gi|294678616|ref|YP_003579231.1| DNA topoisomerase I [Rhodobacter capsulatus SB 1003]
gi|294477436|gb|ADE86824.1| DNA topoisomerase I [Rhodobacter capsulatus SB 1003]
Length = 879
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 154/595 (25%), Positives = 259/595 (43%), Gaps = 51/595 (8%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSA 155
V D K K + + L+L D DREGE I++ + + + + R F+A
Sbjct: 53 EVAADSKKHIKAITDALANDDELILATDPDREGEAISWHLQQALASKLKKKKVSRVTFNA 112
Query: 156 LIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNL 215
+ I +A++ + +Q DA AR+ +D +G + + L
Sbjct: 113 ITKSAITEAMKAPREVDQALVDAYLARRALDYLVGFNLSPVLWRKLPGAK---------- 162
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG---TATFSWMRGHL---F 269
S G Q L +VER EI+A + E+WT+ + G TA + + G F
Sbjct: 163 --SAGRVQSVCLRLIVEREMEIEAFRAREYWTVTAELTTPRGQTFTARLTVLGGKKLDKF 220
Query: 270 DYTSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTM 326
D T+A E+ VQ T+ TV V + + P P T L++ ASR F M ++ M
Sbjct: 221 DLTTATDA-ELAVQAVTSRDLTVKSVEAKPATRNPYPPFMTSTLQQEASRKFGMGAKACM 279
Query: 327 KVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPG 386
A+ LY+AG I+Y RT D +++I + + + + +++N
Sbjct: 280 SAAQRLYEAGHITYMRT--DGIDMAPEAVMAARDEIKRR----FGDKYVPSSPRMYKNKA 333
Query: 387 SGGHDDKAHPPIHPTKFSSGESRW--SQDHYKLYELVVRHFLACVSQPAVGAETIVEINI 444
+ AH I PT S + + D +KLY+L+ + LA AV T V++
Sbjct: 334 KNAQE--AHECIRPTDMSQSPDKLKLADDQWKLYDLIWKRTLASQMSAAVMERTTVDVGS 391
Query: 445 A-GEV-FSTSGRVILAKNYLDVY---RFESWG--GLVIPTYVHGQQFIPTTLTLDSGVTR 497
EV +G+V+ +L +Y R + G G +P + G+ +T + T+
Sbjct: 392 KDNEVELRATGQVVTFDGFLKIYDQGRDDDEGEDGARLPQIMQGEPAQKGAITPEQHFTQ 451
Query: 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
PPP +EA L+ M++ GIG +T + ++DR Y KD N R P + G +
Sbjct: 452 PPPRYTEATLVKRMEELGIGRPSTYASILTTIVDRGYVRKDKN-RLIPEDTGRLVTAFLS 510
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---LDARLKKV--KLL 612
+ + + + +E+++ ++S G++ DVLA + A D R+ +V K+
Sbjct: 511 NYFRRYVEYDFTADLETELDDISAGDRPYRDVLARFWRDFSAALAETADLRIGEVLSKID 570
Query: 613 EAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
E +G +A G R C +C + LK +R G +GC +P CR
Sbjct: 571 EVLGPHL------YPARADGSDPRSCPVCSAGRLHLKTARSGGAFIGCGNYPDCR 619
>gi|410722055|ref|ZP_11361370.1| DNA topoisomerase I, archaeal [Methanobacterium sp. Maddingley
MBC34]
gi|410597861|gb|EKQ52468.1| DNA topoisomerase I, archaeal [Methanobacterium sp. Maddingley
MBC34]
Length = 718
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 156/680 (22%), Positives = 276/680 (40%), Gaps = 52/680 (7%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
V EKP ++ +A + G +++ Y K+ + G+ +L S GHL L
Sbjct: 6 VCEKPKASEKIAAAIP---GKAVKKS---YKKVPYYEIDEGGKKTTVL--SAVGHLYSLS 57
Query: 73 -FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENI 131
+ + LY K ++ D K + A R + D D EG I
Sbjct: 58 PLKKEKGRMFEVGWVPLYEKDKSKKYVKNYIDAIKKFSKNADR---FIHACDYDIEGTLI 114
Query: 132 AFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGA 191
F ++ R +FS L ++ +A +D + D+ +AR +D G
Sbjct: 115 GFNALKYACGEKSLDNAVRMKFSTLTKEDLLKAYNEPIDLDFNQVDSGEARHVLDFIFGV 174
Query: 192 SFTRFQTMLLKNFHIDSV--TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
+ ++ T DSV R + LS G Q PTL +VER EIQ+ E +W I
Sbjct: 175 NISKHLT--------DSVMKATSRYIQLSAGRVQTPTLAILVEREKEIQSFIPEPYWLIK 226
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
EG +G +FD I C + A V+K+ +E + PP P
Sbjct: 227 AKI---EGDIIADHKKGKIFDKKVQKEILSDC-EGKDALVSKISVKETPQLPPVPFDLGS 282
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
L+ A F S + T +A++LY G+ SYPRT + I+ + + +
Sbjct: 283 LQSEAYGVFGFSPKKTQSIAQNLYSEGYTSYPRTSSQKLPPSIGYKKILGQLKKNAAFRK 342
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
++L + P G D+AHP IHPT +D+ KLYEL+V F++
Sbjct: 343 QVEKLPEPI-----KPREGKKTDEAHPAIHPTGLIP--KGLGRDYQKLYELIVYRFISVF 395
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
+ + +++I G+ F+ S + + + + Y + P G +
Sbjct: 396 GENGLLETMKTQLDIGGQEFAFSRKRMAKMGWREHYPYRKVENDEFPALKEGDRLDAQVY 455
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ + T+PP ++A L+ ++K G+GT +T + I L DR Y + + +G
Sbjct: 456 S-EEKETKPPARYNQASLIRELEKRGLGTKSTRANIISILYDRKYV---EGKKISVNQLG 511
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
E L+ ++ L E+ ++ + K +++ +++ + D + K+
Sbjct: 512 ERLIDTLKKYSQKITSEELTREFETKLEGIMQAEVKKDEIITEAKEEVSSILDDIDVNKM 571
Query: 610 KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
K+ + E ++ + G+ +CG N+++ S G VGC ++P C++
Sbjct: 572 KIGQ------ELYAAYRESMIVGKC--KCG----GNLIMINSAKGGSFVGCTSYPDCKST 619
Query: 670 VWLPGSVSEAAVTTNTCNSC 689
+P A V C C
Sbjct: 620 YSMPRG---ATVLKTKCEVC 636
>gi|408382419|ref|ZP_11179963.1| DNA topoisomerase I [Methanobacterium formicicum DSM 3637]
gi|407814774|gb|EKF85397.1| DNA topoisomerase I [Methanobacterium formicicum DSM 3637]
Length = 718
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 156/680 (22%), Positives = 276/680 (40%), Gaps = 52/680 (7%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
V EKP ++ +A + G +++ Y K+ + G+ +L S GHL L
Sbjct: 6 VCEKPKASEKIAAAIP---GKAVKKS---YKKVPYYEIDEGGKKTTVL--SAVGHLYSLS 57
Query: 73 -FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENI 131
+ + LY K ++ D K + A R + D D EG I
Sbjct: 58 PLKKEKGRMFEVGWVPLYEKDKSKKYVKNYIDAIKKFSKNADR---FIHACDYDIEGTLI 114
Query: 132 AFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGA 191
F ++ R +FS L ++ +A +D + D+ +AR +D G
Sbjct: 115 GFNALKYACGEKSIDNAVRMKFSTLTKEDLLKAYNEPIDLDFNQVDSGEARHVLDFIFGV 174
Query: 192 SFTRFQTMLLKNFHIDSV--TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
+ ++ T DSV R + LS G Q PTL +VER EIQ+ E +W I
Sbjct: 175 NISKHLT--------DSVMKATSRYIQLSAGRVQTPTLAILVEREKEIQSFIPEPYWLIK 226
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
EG +G +FD I C + A V+K+ +E + PP P
Sbjct: 227 AKI---EGDIIADHKKGKIFDKKVQEEILSDC-EGQDAVVSKINVKETPQLPPVPFDLGS 282
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
L+ A F S + T +A++LY G+ SYPRT + I+ + + +
Sbjct: 283 LQSEAYGVFGFSPKKTQSIAQNLYSEGYTSYPRTSSQKLPPSIGYKKILGQLKKNAAFRK 342
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
++L + P G D+AHP IHPT +D+ KLYEL+V F++
Sbjct: 343 QIEKLPEPI-----KPHEGKKTDEAHPAIHPTGLVP--KGLGRDYQKLYELIVYRFISVF 395
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
+ + +++I G+ F+ S + + + + Y + P G +
Sbjct: 396 GENGLLETMKTQLDIGGQEFAFSRKRMAKMGWREHYPYRKVENDEFPLLKEGDRLNAEAY 455
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ + T+PP ++A L+ ++K G+GT +T + I L DR Y + + +G
Sbjct: 456 S-EEKETKPPARYNQASLIRELEKRGLGTKSTRANIISILYDRKYV---EGKKISVNQLG 511
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
E L+ ++ L E+ ++ + K +++ +++ + D + K+
Sbjct: 512 EHLIDTLKKYSQKITSEELTREFETKLEGIMQAEVKKDEIITEAKEEVNSILDDIDVNKM 571
Query: 610 KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
K+ + E ++ + G+ +CG N+++ S G VGC ++P C++
Sbjct: 572 KIGQ------ELYAAYRESMIVGKC--KCG----GNLIMINSPKGGSFVGCTSYPDCKST 619
Query: 670 VWLPGSVSEAAVTTNTCNSC 689
+P A V C C
Sbjct: 620 YSMPRG---ATVLKTKCEEC 636
>gi|261404795|ref|YP_003241036.1| DNA topoisomerase III [Paenibacillus sp. Y412MC10]
gi|261281258|gb|ACX63229.1| DNA topoisomerase III [Paenibacillus sp. Y412MC10]
Length = 712
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 168/633 (26%), Positives = 281/633 (44%), Gaps = 84/633 (13%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPSVAK +A ++ RE + Y + ++ ++T GH
Sbjct: 1 MKVLVLAEKPSVAKEIARVMGS------REKQKNYFEGPKY-----------IVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQW--LVLW 121
L+ L D+D++Y+ W + + + R V ++ KT++ +R +++
Sbjct: 44 LVGLAEPEDYDKKYQTW-ALEDLPILPDNTRLKVLKETSHQFKTVQHLMKRSDVGEMIIA 102
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---DA 178
D REGE +A ++ R + +R S+ D+ I + +L P Q F ++
Sbjct: 103 TDAAREGELLARWIL---RMAKWNKPFKRLWISSQTDKAIKEGFASL-KPGQQFDRLYES 158
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
R E D +G + TR ++T N LS G Q PTLG +++R EI
Sbjct: 159 ARCRAEADWMVGLNVTR------------ALTTKFNAQLSAGRVQTPTLGMIMDREREIV 206
Query: 239 AHESEEFWTINCSHKSEEGTATFSWM----RGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
S+E+ T+ +++ G+ SW G LF+ A + + ++ T + V++
Sbjct: 207 NFRSQEYETL----QADLGSFEVSWRPAGGDGRLFEKDKAAKLKQK-LEGSTGKIVSVKK 261
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTN 353
EK + P EL++ A+R F S++ T V + LY Q ++YPRT++ +S +
Sbjct: 262 SEKTEPHPLAYDLTELQRDANRRFGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLTS--D 319
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWR---NPGSGGHDDKA---HPPIHPTKFSSGE 407
+ G ++E++ GPYA A L R +PG DD H I PT+ +
Sbjct: 320 MVGTLKERLSSIAIGPYA----SIARPLLRKNLSPGKRVVDDSKVTDHHAIIPTEQTVLL 375
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
++ S D KLY+L+VR F++ PA V + I GE G I + +VY
Sbjct: 376 NQLSVDERKLYDLIVRRFISLFYPPARYDNVSVTVQIEGEQLYAKGTTIKDSGWREVYGG 435
Query: 468 E---------------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD 512
+ S G ++P G+ L G T+PP +EA LLS M+
Sbjct: 436 DYEDDTDDESDDGQGPSSSGKLLPELKEGESVKVVRCVLKPGRTQPPKRYNEAALLSQME 495
Query: 513 KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMM 572
K G+GT AT D I+KL+ + T PT G+ L+ + + EL P L +
Sbjct: 496 KHGLGTPATRADIIEKLVSSDTIERQGQT-LHPTGKGKQLI---ELVAPELRTPELTARW 551
Query: 573 ESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
E++++ ++ G L K D +
Sbjct: 552 EAELERIAKGQGKPEPFLRGIRDMTKKLVTDVK 584
>gi|372280138|ref|ZP_09516174.1| DNA topoisomerase I subunit omega [Oceanicola sp. S124]
Length = 885
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 155/604 (25%), Positives = 265/604 (43%), Gaps = 66/604 (10%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR---AVNCHLVLRRAR 152
+ D K K + + + L+L D DREGE I++ + E R A+ + R
Sbjct: 53 EIASDSKKHVKAIADALKDDNALILATDPDREGEAISWHLEEALRNRKALKKDTPVSRVV 112
Query: 153 FSALIDREIHQAVQNLVDPNQWFADAVDA---RQEIDLRIGASFTRFQTMLLKNFHIDSV 209
F+A+ + +A++N P Q D V A R+ +D +G + + L
Sbjct: 113 FNAITKTAVTEAMKN---PRQVDGDLVHAYLARRALDYLVGFNLSPVLWRKLPGAK---- 165
Query: 210 TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRG 266
S G Q L +VER EI+A E+W++ + + +E A + + G
Sbjct: 166 --------SAGRVQSVCLRLIVEREMEIEAFRPREYWSVKAILTTPRGQEYEARLTVLAG 217
Query: 267 HLFDYTSA--VIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMS 321
D S EM VQ T+ TVT V + + P P T L++ ASR F M
Sbjct: 218 DKLDKYSIENATQAEMAVQAITSRDLTVTSVEAKPASRNPSPPFMTSTLQQEASRKFGMG 277
Query: 322 SEHTMKVAEDLYQAGFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAA 379
+ TM A+ LY+AG I+Y RT+ + + T + ++ G D+ P + R
Sbjct: 278 ARQTMNAAQRLYEAGHITYMRTDGIDMAPEAVTACREAIADRFGK-DYVPSSPR------ 330
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKFSSGESR--WSQDHYKLYELVVRHFLACVSQPAVGAE 437
+++N + AH I PT + + S D KLY+L+ + LAC + A
Sbjct: 331 -VYKNKAKNAQE--AHECIRPTDMTKDAAALGLSDDQRKLYDLIWKRTLACQMEGARMER 387
Query: 438 TIVEI-NIAGEV-FSTSGRVILAKNYLDVYRFESWGGLV-----IPTYVHGQQFIPTTLT 490
T VEI + G+V +G+V+L +L +Y + +P G++ +T
Sbjct: 388 TTVEIGSRDGQVGLRATGQVVLFDGFLKIYEEGRDDVVDDDDNRLPQISQGEKAEKKKIT 447
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
D T+PPP +EA L+ M++ GIG +T + + DR Y +KD N R P + G
Sbjct: 448 PDQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVVKDKN-RLIPEDKGR 506
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKV 609
++ + + + + + +E ++ +VS G++ DVL + A + + L+
Sbjct: 507 LVIAFLSNYFKKYVEYDFTADLEEELDDVSAGDRDYKDVLGRFWRDFSAAIAETSELRIT 566
Query: 610 KLLEAMG------IFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAF 663
++L+ + +F GG+ R C C + ++ +R G +GC +
Sbjct: 567 EVLDKINEVLEPHLFPPLPDGGDP--------RLCPNCGAGRLSMRTARSGGAFIGCSNY 618
Query: 664 PQCR 667
P+CR
Sbjct: 619 PECR 622
>gi|359415855|ref|ZP_09208246.1| DNA topoisomerase I [Candidatus Haloredivivus sp. G17]
gi|358033810|gb|EHK02324.1| DNA topoisomerase I [Candidatus Haloredivivus sp. G17]
Length = 683
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 166/697 (23%), Positives = 289/697 (41%), Gaps = 72/697 (10%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
V EKP VA +A L I E R N + E N G+ +++ GH+ L+
Sbjct: 7 VGEKPKVASRLAQALG---DYSIEENRGVKNYVLEKN----GET--IIIAPAVGHIFNLN 57
Query: 73 FDERYRKWHSCDPADLYHAPV--RKHVP----EDKKDIKK----TLEEEARRCQWLVLWL 122
D +D + PV + VP +D D K L+++ + +
Sbjct: 58 -----------DKSDSWDYPVFDVEWVPTFETDDSADYMKKYYNNLKDQLSKADEYINAC 106
Query: 123 DCDREGENIAFEVIEVCRAVNCHLV------LRRARFSALIDREIHQAVQNLVDPNQWFA 176
D D EG I VI+ HL ++R +FS L ++ +A +L ++
Sbjct: 107 DYDLEGSVIGANVIK-------HLTDASDDRIKRMKFSTLTASDLEEAYDDLESFDEGMT 159
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
+A R +D G + +R L+K ++DR LS G Q P L + E+
Sbjct: 160 EAGLTRHVLDFYYGINVSR---ALMKAVR----SNDRYKTLSTGRVQGPALAMLAEKERS 212
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
I E + +W I + + + L+D +A I++ E V+ V +
Sbjct: 213 IMEFEPDPYWEIFLRNSEFDAKLEYDG-EDRLWDEETAEQIFQTVEGEDETIVSDVDTRN 271
Query: 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 356
P P + +L+ AS F ++ + T +A+ LY+ G ISYPRTE+ +
Sbjct: 272 YKHKVPVPFNLTDLQSEASSQFNINPKQTQAIAQTLYENGLISYPRTESQKLPAKIGYKN 331
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 416
++++ ++ A+++LD P G +D AHP I+PT G S+ K
Sbjct: 332 LLKKIKNQENYTELAKKVLDKDEVY---PKQGKKEDDAHPAIYPTGEQPG--NLSKKERK 386
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVI 475
+Y+L+V+ FLA + A + + G F ++ L +N+ D+Y + +
Sbjct: 387 VYDLIVKRFLAVFGKAAERQSITMTLETLGYEFKAKSKITLERNWFDLYDPYVRVEEAEL 446
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
P GQ+ T+PP S++ ++S ++K +GT AT + +L +R Y
Sbjct: 447 PELEEGQRLDVEEFEKVEKETKPPRRYSQSGIVSELEKRNLGTKATRAQIVDRLYNRDYI 506
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
D T +G ++V + E+ NL E M+ + G ++ +VL
Sbjct: 507 EGDP---IEVTKLGLSIVNVLEKYCSEVVSENLTRDFEEKMENIREGENTRPEVLNKAEN 563
Query: 596 QMKACFLDARLKK----VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKS 651
+ D + K+ +L+E + R + R+ GI Q ++K +
Sbjct: 564 NLGEVLRDFKEKQKEIGAELVETIDAERNRKRKLGPCDKCEDEGREDGILQ----IIKTN 619
Query: 652 RDGNLMVGCLAFPQCRNAVWLP--GSVSEAAVTTNTC 686
G+ VGC +P C N LP G+++ + TC
Sbjct: 620 --GSRFVGCTNYPDCENTYPLPNNGTINSSDKECETC 654
>gi|310816235|ref|YP_003964199.1| DNA topoisomerase I [Ketogulonicigenium vulgare Y25]
gi|385233740|ref|YP_005795082.1| DNA topoisomerase I [Ketogulonicigenium vulgare WSH-001]
gi|308754970|gb|ADO42899.1| DNA topoisomerase I [Ketogulonicigenium vulgare Y25]
gi|343462651|gb|AEM41086.1| DNA topoisomerase I [Ketogulonicigenium vulgare WSH-001]
Length = 883
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 152/596 (25%), Positives = 261/596 (43%), Gaps = 64/596 (10%)
Query: 118 LVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW 174
L+L D DREGE I++ ++E +A+ + R F+A+ + +A+QN +
Sbjct: 75 LILATDPDREGEAISWHLVEALTDRKAIKKDTPVSRVVFNAITKSAVTEAMQNPRQVDAP 134
Query: 175 FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
+A AR+ +D +G + L S G Q L +V+R
Sbjct: 135 LVEAYLARRALDYLVGFKLSPVLWRKLPGAK------------SAGRVQSVCLRVIVDRE 182
Query: 235 WEIQAHESEEFWTINCSHKSEEG---TATFSWMRGHLFDY--TSAVIIYEMCVQEPTA-- 287
EI+A ++E+WT+ ++ G TA + G D + EM VQ T+
Sbjct: 183 VEIEAFRAQEYWTVAAEIETPRGQIFTARLVTLGGKKLDKFDLGNQVAAEMAVQAVTSRA 242
Query: 288 -TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD 346
+V V + ++P P T L++ ASR F M ++ TM A+ LY+AG I+Y RT+
Sbjct: 243 LSVQGVEAKPAQRHPSAPFMTSTLQQEASRKFGMGAKATMSAAQRLYEAGLITYMRTDGI 302
Query: 347 SFSSGTNLHG--IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFS 404
+ + ++++ G D+ P + R +++N + AH I PT +
Sbjct: 303 DMAPEAVMAARDAIRDKFGA-DYLPASPR-------MYKNKAKNAQE--AHECIRPTDMT 352
Query: 405 SGESRW---SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA-GEV-FSTSGRVILAK 459
G + D KLY+L+ + +A A T V+I A G+V +G+V+L
Sbjct: 353 RGVEQQKIVDADQRKLYDLIYKRTIASQMAAARLERTTVDIGAADGQVGLRATGQVVLFD 412
Query: 460 NYLDVYRF-------ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD 512
+L +Y E G L P + G+ +T D T+PPP +EA L+ M+
Sbjct: 413 GFLAIYEEGRDDSTDEDEGRL--PQMMQGEALKKLAVTPDQHFTQPPPRYTEATLVKRME 470
Query: 513 KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMM 572
+ GIG +T + + DR Y KD N R P + G + ++ + + + +
Sbjct: 471 ELGIGRPSTYASIVTTIQDRGYVQKDKN-RLIPQDKGRLVTAFLENYFPRYVEYDFTAGL 529
Query: 573 ESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKVKLLEAMG-----IFFERWSGGE 626
E + +VS G+ DVL + A + + L+ +LE + I F G
Sbjct: 530 EDQLDKVSAGDADYKDVLRQFWRDFSAALNETSELRITDVLEKLNEVLSPIMFPPKPDGS 589
Query: 627 DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR-NAVWLPGSVSEAAV 681
D +A C C ++ ++ +R G +GC +P+CR + P ++E A+
Sbjct: 590 DPRA-------CPNCGNGHLSMRTARSGGAFIGCSNYPECRFTRPFGPPELAEGAI 638
>gi|156936802|ref|YP_001434598.1| DNA topoisomerase I [Ignicoccus hospitalis KIN4/I]
gi|156565786|gb|ABU81191.1| DNA topoisomerase I [Ignicoccus hospitalis KIN4/I]
Length = 657
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 155/602 (25%), Positives = 256/602 (42%), Gaps = 54/602 (8%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
++L +AEKP A+ +A L G+ + Y Y +++ GHL
Sbjct: 4 HILVIAEKPKAAEKIANAL----------GKPIVKRKYGVPYWELTNGKKIVVVPAAGHL 53
Query: 69 MELD--------FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
L FD +R LY + K KK I + + V
Sbjct: 54 FGLAPLGKGFPVFDYEWR--------PLYE--IEKGASHTKKYIA-LISSLSPGSSLYVN 102
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW-FADAV 179
D D EG I + +IE +R F AL EI +A N + P W +A
Sbjct: 103 ACDYDVEGSVIGYIIIERFGDPRRS---KRMVFHALTPDEIRRA-WNSLRPLDWEMINAG 158
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
AR E+D G + +R H V ++ LS G Q PTL VVER +Q
Sbjct: 159 LARHELDWIWGINVSR------ALMHAYRVATGKSKSLSAGRVQSPTLKEVVERELAVQC 212
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
E +++++ S K T + D+ C+ + V + E+L
Sbjct: 213 FVPEPYFSVSLSAKGVSLEPTLKFETKDEADH-----FISNCLGK---VVDVIVNDERLS 264
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
PP+P + +L+ A+R + S T +AE+LY +ISYPRT + + + I++
Sbjct: 265 -PPHPFNLPDLQMEAARLYGFSPSKTQSIAEELYLDAYISYPRTNSQKYPKDLDYANILK 323
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
P + P + L G + +P +G DD AHP I+PT S DH K+Y+
Sbjct: 324 GIASVPQYRPLTKALFKETRGRF-SPNNGPKDDPAHPAIYPT--GKPPKNLSPDHMKVYD 380
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
L+VR F+A ++ +V T V I + G+ F GR + K + Y F + +P++
Sbjct: 381 LIVRRFMATLASESVYEVTKVVIEVNGQTFKAVGRRVKWKGWTLYYPFSAPQEKSLPSFT 440
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G+ + T T+PP ++A ++ M++ GIGT+AT ++ L R Y +K+
Sbjct: 441 KGES-LQVKCTRRLQYTKPPERYTKAKIVKWMERVGIGTEATRARIVETLFKRGY-LKNV 498
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
++ T++G + + E+ L E DMK++ +G + K ++ + M+
Sbjct: 499 GSKVYATDLGIGVALVLSKFFPEIVSVELTRRFEEDMKKIMMGVERKEKIVEEAKKFMRM 558
Query: 600 CF 601
Sbjct: 559 IL 560
>gi|218884347|ref|YP_002428729.1| DNA topoisomerase I [Desulfurococcus kamchatkensis 1221n]
gi|218765963|gb|ACL11362.1| DNA topoisomerase I family A [Desulfurococcus kamchatkensis 1221n]
Length = 679
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 155/594 (26%), Positives = 253/594 (42%), Gaps = 46/594 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQP-------CHMLMT 62
+L +AEKP AK +A LS + R IYE + + L T
Sbjct: 15 ILVIAEKPKAAKKIASALSPTHNAK----RIGSITIYEVDSYSSSIIIASSVGHLYQLHT 70
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
S+ G+ + + + H DP+ KK I++ LE + C+ + ++
Sbjct: 71 SLRGYPV---YSYEWIPLHLTDPS--------------KKYIREYLEVLGKLCRGVDYYV 113
Query: 123 ---DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
D D EG I + +I+ RARFS+L E+ +A NL + +A
Sbjct: 114 NACDYDIEGSVIGYLIIKFNGDERKAF---RARFSSLTIEELRKAFNNLTRLDYEMIEAG 170
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
R E+D G + +R L+K D+V + ++LS G Q PTL +VV++ E
Sbjct: 171 LCRHELDWIWGINVSR---ALMKAVE-DAVGE--RIILSAGRVQTPTLKYVVDKVVERNL 224
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+ IN + + + + A I E V+KV ++ +
Sbjct: 225 FIPLPQYNINITVEKNGEKIRLEYTGNPVEKERDARDIVEKIRGYKYLIVSKVEKKHHIL 284
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
+PP P + +L+K A+R + S T +AE LY ISYPRT + + I++
Sbjct: 285 HPPPPFNLGDLQKEAARLYGFSPAETQSIAEQLYLDALISYPRTNSQKLPPTLDYRRILE 344
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+ + L+ G+ P G +D AHP I+PT G R ++ + +Y+
Sbjct: 345 NISSIKSYRNLVESLISETKGVL-TPVEGEKEDPAHPAIYPTGVVPG--RLTEKQWAIYD 401
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGE--VFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
L+V+ FLA + PA +V+ VF T G+VI +L Y F ++ IP
Sbjct: 402 LIVKRFLAVFAPPAKIVYYVVKATTPSHEYVFETKGQVIEEYGWLKYYNFHNYHAGKIPV 461
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G+ T T+PP L++ DLL M+ IGT+AT I+KL +R Y +
Sbjct: 462 LKEGELLNIVKATASESYTKPPKRLTKTDLLRWMESVEIGTEATRAQIIEKLFERKYLYQ 521
Query: 538 -DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
++ + IG +V + +L L E +M + G K +++VL
Sbjct: 522 HQKSSGIDVSEIGFGVVEILEKFFPDLLSVELTRKFEKEMDSIRSGVKRRSEVL 575
>gi|375008725|ref|YP_004982358.1| DNA topoisomerase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287574|gb|AEV19258.1| DNA topoisomerase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 697
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 178/614 (28%), Positives = 274/614 (44%), Gaps = 79/614 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L Q + +E I +T GH
Sbjct: 1 MKSLVLAEKPSVARDIARVLGCKQA---------HKHYFEGKQHI--------VTWALGH 43
Query: 68 LMELDFDERY-RKWHSCDPADLYHAPVRKHVPEDKKDIKKT------LEEEARR--CQWL 118
L+EL E Y RK+ + DL P + + K I++T +E A+R + +
Sbjct: 44 LVELKMPEDYDRKYETWRLEDLPIIPKKMGL----KVIRQTSHQFRAIERLAKRPDVKDV 99
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
++ D REGE +A ++E+ + + R S+ DR I + L Q+ +
Sbjct: 100 IIATDAGREGELVARWILEM---IGWTKPIWRLWISSQTDRAIRDGFRQLKPGAQFDRLY 156
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
AV R E D IG + +R ++T N LS G Q PTL ++ER
Sbjct: 157 QSAV-CRAEADWLIGLNVSR------------ALTTKYNDPLSAGRVQTPTLAMIIERER 203
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMR--GH-LFDYTSAVIIYEMCVQEPTATVTKV 292
EIQ+ +WTI +++ G+ T W R GH LFD A + +P A V V
Sbjct: 204 EIQSFVPVPYWTI----RAKIGSITAVWERHGGHRLFDQDEAKQLIARLDGQP-ARVVSV 258
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSS- 350
+++ K + P P EL++ A++ F S++ T+ V + LY Q ++YPRT++ S
Sbjct: 259 KRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDSRYLPSD 318
Query: 351 --GTNLHGIVQEQIGHPD-WGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSS 405
T ++ + G+ D P + AA N DDK H I PT
Sbjct: 319 MEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFN------DDKVTDHHAIVPTDERL 372
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
SR S D KLY+L+ R FLA P T +I GE+F ++ + V
Sbjct: 373 NLSRLSTDERKLYDLIARRFLALFFPPYESETTTAVFDIGGEMFVAKETAVVNFGFKAVL 432
Query: 466 RFESWGGLVIPTYVH---GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
E PT H GQ L + T PP SEADLL+ M+K G+GT AT
Sbjct: 433 GKEETDA--KPTLSHLAEGQTLPSVQLEREQSFTEPPARYSEADLLAQMEKYGLGTPATR 490
Query: 523 HDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
D I++L++ ++ + RF PT G+ L+ + + EL P L + E +++ ++ G
Sbjct: 491 ADIIERLVE-TEVVERKDGRFYPTKKGKQLI---ELVNEELKSPELTARWERELEAIARG 546
Query: 583 NKSKADVLANCLQQ 596
+ LAN +Q
Sbjct: 547 KGNPQQFLANIRRQ 560
>gi|14601630|ref|NP_148170.1| DNA topoisomerase I [Aeropyrum pernix K1]
gi|14423993|sp|Q9YB01.1|TOP1_AERPE RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Omega-protein; AltName: Full=Relaxing
enzyme; AltName: Full=Swivelase; AltName:
Full=Untwisting enzyme
gi|5105484|dbj|BAA80797.1| DNA topoisomerase I [Aeropyrum pernix K1]
Length = 673
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 137/488 (28%), Positives = 221/488 (45%), Gaps = 24/488 (4%)
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
D D EG I F++IE VN RR +FS L ++I +A + + +A AR
Sbjct: 103 DYDIEGSVIGFKIIEAFGDVNRA---RRMKFSTLAPQDIRRAYARMERLDVEMIEAGMAR 159
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+D G + +R R ++LS G Q PTL R+ EI H
Sbjct: 160 SEMDWLWGINVSR------ALMEAARRAAGRRVILSAGRVQSPTLVEAYRRWREINLHVP 213
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTS---AVIIYEMCVQEPTATVTKVRQQEKLK 299
+ ++ +E+G F R H + S A I + P V +VR + +
Sbjct: 214 KA--SVAVKITAEKGGGVFD-ARPHGWKPQSLETARSIKSELRKNPWLAVEEVRSERSIL 270
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
PP + +L+K A+R + T +AE+LY ISYPRT + N I+
Sbjct: 271 RPPPAFNLGDLQKEANRILGLPPLRTQSIAEELYLEALISYPRTNSQKLPPSINYRAIL- 329
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+++ H G A+ LL G+ R P G DD AHP IHPT + R S++H +YE
Sbjct: 330 DKLAHGPLGREARELLKETGGVLR-PVQGSKDDPAHPAIHPTGEKPSQ-RLSKEHMAVYE 387
Query: 420 LVVRHFLACVSQPAVGAETIVEI-NIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
L+VR FLA S+ A+ +++ V + + G V+ G + +L Y + + G +P
Sbjct: 388 LIVRRFLAAFSREAIVSKSSVLLRDFQGRVWRAEGLRVEDLGWLKYYHYSTPGEKPMPPL 447
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G + + + ++ P L +A LL M+ IGT+ T I+ L R Y
Sbjct: 448 DRGDKARVVRVDVRVEWSQTPVRLDKASLLRWMESVNIGTEGTRARIIETLYKRGYLEGS 507
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL---ANCLQ 595
+ P +GEA+ + + EL KP+L ES ++++ G +++ +V+ +
Sbjct: 508 RKSEVTP--LGEAVAVIIQTLFPELSKPDLTRRFESMIEDIRSGRRTRQEVIDMSKKTIS 565
Query: 596 QMKACFLD 603
++ FLD
Sbjct: 566 KLLESFLD 573
>gi|84501685|ref|ZP_00999857.1| DNA topoisomerase I [Oceanicola batsensis HTCC2597]
gi|84390306|gb|EAQ02865.1| DNA topoisomerase I [Oceanicola batsensis HTCC2597]
Length = 867
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 154/599 (25%), Positives = 262/599 (43%), Gaps = 55/599 (9%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR---AVNCHLVLRRAR 152
V D K K + + + L+L D DREGE I++ + E R A+ + R
Sbjct: 53 EVASDSKKHVKAIADALKDDNALILATDPDREGEAISWHLEEALRNRKALKKDTPVSRVV 112
Query: 153 FSALIDREIHQAVQNLVDPNQWFADAVDA---RQEIDLRIGASFTRFQTMLLKNFHIDSV 209
F+A+ + +A++N P Q D V+A R+ +D +G + + L
Sbjct: 113 FNAITQAAVTEAMKN---PRQVDGDLVEAYLARRALDYLVGFNLSPVLWRKLPGAK---- 165
Query: 210 TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRG 266
S G Q L +VER EI+A + E+W++ + + +E A + + G
Sbjct: 166 --------SAGRVQSVCLRLIVEREMEIEAFRAREYWSVTALLATPRGQEFEARLTVLGG 217
Query: 267 HLFDY--TSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMS 321
D + E+ VQ T+ +V V + + P P T L++ ASR F M
Sbjct: 218 KKLDRYDIADATAAELAVQAVTSRDLSVQSVEARPATRNPSPPFMTSTLQQEASRKFGMG 277
Query: 322 SEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
+ TM+ A+ LY+AG I+Y RT+ G ++ E G Y + + A +
Sbjct: 278 ARQTMQAAQRLYEAGHITYMRTD------GIDMAPEAVEACRAAIAGRYGKDYVPGQARV 331
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGES--RWSQ-DHYKLYELVVRHFLACVSQPAVGAET 438
++N + AH I PT ++ R ++ D KLY+L+ + LAC + A T
Sbjct: 332 YKNKAKNAQE--AHECIRPTDMAADAEALRLTEPDQKKLYDLIWKRTLACQMESARLERT 389
Query: 439 IVEI-NIAGEV-FSTSGRVILAKNYLDVYR-----FESWGGLVIPTYVHGQQFIPTTLTL 491
V+I + G+V +G+V+L +L VY +P G +T
Sbjct: 390 TVDIGSRDGQVGLRATGQVVLFDGFLRVYEEGRDDVVDDDDKRLPQISQGDAMDKRKVTP 449
Query: 492 DSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEA 551
D T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G
Sbjct: 450 DQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVRKDKN-RLIPEDKGRL 508
Query: 552 LVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKVK 610
+ ++ + + + + +E ++ +VS G++ DVL + A + + L+ +
Sbjct: 509 VTAFLENYFRKYVEYDFTADLEEELDDVSAGDRDYKDVLGRFWRDFSAAIAETSELRITE 568
Query: 611 LLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
+LE + E + ED G R C C + ++ +R G +GC +P+CR
Sbjct: 569 VLEKINEVLEPHLFPPTED----GSDPRLCPHCGAGRLSMRTARSGGAFIGCSNYPECR 623
>gi|317052378|ref|YP_004113494.1| DNA topoisomerase I [Desulfurispirillum indicum S5]
gi|316947462|gb|ADU66938.1| DNA topoisomerase I [Desulfurispirillum indicum S5]
Length = 768
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 153/591 (25%), Positives = 262/591 (44%), Gaps = 68/591 (11%)
Query: 100 DKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDR 159
DKK + L+ A R + L D DREGE IA+ + E+ + N L ++R F+ + +
Sbjct: 60 DKKKVIDELKSAASRVDEVFLASDPDREGEAIAWHISEILQKENKGLAIKRVLFNEITKK 119
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSY 219
I QA+++ + Q DA AR+ ID +G + F + RN LS
Sbjct: 120 AIVQALEHPGEIVQPKVDAQQARRIIDRIVGYKISPFLWEKI----------SRN--LSA 167
Query: 220 GPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMR-----GHLFDYTSA 274
G Q L V ER EI A +EE+W++ +E R + D +A
Sbjct: 168 GRVQSVALRLVCEREKEIDAFVTEEYWSVVTQFIKDEVPFQAKLFRIKEKKAQIKDGDTA 227
Query: 275 VIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY- 333
I + +++ + TV V +++K K P P +T +L++ ASR R S++ TM VA+ LY
Sbjct: 228 HAIVD-ALKKGSFTVGTVEKKQKRKRPMPPFTTSKLQQDASRKLRFSAKKTMMVAQSLYE 286
Query: 334 --------QAGFISYPRTETDSFSSGTNLHGIVQEQIGH---PDWGPYAQRLLDHAAGLW 382
Q G I+Y RT++ S + + +E IG PD+ P R+
Sbjct: 287 GVNLGEYGQTGLITYMRTDSTRLSQ--DAIDMAREYIGKTFGPDYLPEKPRVY------- 337
Query: 383 RNPGSGGHDDKAHPPIHPTKFSSGES---RWSQDHYKLYELVVRHFLACVSQPAVGAETI 439
+GG AH I PT + ES + D Y+LY+LV FLA A+ T
Sbjct: 338 ---ATGGKTQDAHEAIRPTTSLNPESIKAHLTGDQYRLYKLVFDKFLASQMADALIDATA 394
Query: 440 VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTYVHGQQFIPTTLTLDSGV 495
+I +G V+ +L +Y+ ++P G + +
Sbjct: 395 ADIINGDYTLRATGSVVAFAGHLALYQAVEESAKKEEDILPPLHQGDKLTSEDIQALQHF 454
Query: 496 TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMG 555
T+PPP +EA L+ +++ GIG +T + + DR Y K+ + +F PT G+ +
Sbjct: 455 TQPPPRYTEATLVKTLEEKGIGRPSTYASILSTIEDRKYVEKE-DRKFTPTERGKIVNEL 513
Query: 556 YDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAM 615
+ EL++ + + +E+ + + G ++ D L N + + A+ + +K ++ +
Sbjct: 514 LVNHFPELFEYSFTANLEAKLDRIEEGEENWKDTLGNFYEGFQRELEKAK-ESLKHVDKI 572
Query: 616 GIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
I +G +C E+ +V+K R+G + C+ +P+C
Sbjct: 573 NI------------KSGVACPKC----EAELVIKSGRNGEFL-ACIRYPEC 606
>gi|288553428|ref|YP_003425363.1| DNA topoisomerase III [Bacillus pseudofirmus OF4]
gi|288544588|gb|ADC48471.1| DNA topoisomerase III [Bacillus pseudofirmus OF4]
Length = 723
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 152/576 (26%), Positives = 259/576 (44%), Gaps = 67/576 (11%)
Query: 56 PCHMLMTSVTGHLMELDFDERYR-KWHS--CDPADLYHAPVRKHVPEDK----KDIKKTL 108
P +T GHL EL+ E+Y KW S D + + V + K + +KK +
Sbjct: 37 PEGAFVTWAVGHLCELESPEKYDPKWKSWKLDTLPILPPTFKYKVSKGKYKQFQVVKKLI 96
Query: 109 EEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL 168
E R + +++ D REGE I +IE CRA + L+R S+L + + N
Sbjct: 97 EN--RNVREIIMAGDAGREGELIVRLIIEQCRASHP---LKRLWLSSLTRQAVIDGF-NT 150
Query: 169 VDPNQW---FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+ P Q D +R D IG + +R T+LL ID V S G Q P
Sbjct: 151 LKPEQETRPLYDEALSRACADWLIGMNASRAYTLLLGEKGIDDV-------FSTGRVQTP 203
Query: 226 TLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRG---HLFDYTSAVIIYEMCV 282
TL +V+R EI+A + E FW + + K E T W + + A+ I + C
Sbjct: 204 TLALIVKREKEIEAFKPEPFWEVKAAFKMGEKTYEGVWHKKGETRVNSSRQALQIAQFCE 263
Query: 283 QEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
+P A V +++++K PPY + L+ A++ ++ S + T+ +A+ LY G+ISYPR
Sbjct: 264 GKP-AIVQAIKEEKKEYAPPYLYNLSSLQTAANKRYKYSPKKTLDLAQKLYVKGYISYPR 322
Query: 343 TETDSFSSG--TNLHGIVQEQIGHPDWGPY----AQRLLDHAAGLWRNPGSGGHDDKA-- 394
T++ + G + I+Q+ ++ + + L+++ + +D K
Sbjct: 323 TDSSFVTKGEASTFPAILQKLSAFKEYESFFPLPVKSLMNNRRFV--------NDQKVSD 374
Query: 395 HPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGE-VFSTSG 453
H I PT+ + R + +Y+L+VR LA A+ + T VE + G F + G
Sbjct: 375 HYAIIPTEQVPKQERLGAEERNIYDLIVRSLLAAHENAAIISHTQVETIVDGRATFQSKG 434
Query: 454 RVILAKNYLD-VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD 512
+ ++ + + +Y + ++P HG++ + + + G+T+PP +E L++ M
Sbjct: 435 KQMINEGWRKIIYEGKKQEDTLLPPLSHGEEGVVSKSVVKEGMTQPPKRYTEGQLITVMK 494
Query: 513 KA-----------------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMG 555
A G+GT+AT I L DR Y + + N F PT G L+
Sbjct: 495 AAGKSIEDKELEKVMMESHGLGTEATRAGIITVLKDRGYMMVEKNIVF-PTQKGRLLI-- 551
Query: 556 YDDMGYE-LWKPNLRSMMESDMKEVSVGNKSKADVL 590
D +G L + + E ++E+ G SK D +
Sbjct: 552 -DSLGTSILASAEMTAKWEQRLREIGKGAASKNDFM 586
>gi|300855523|ref|YP_003780507.1| DNA topoisomerase I [Clostridium ljungdahlii DSM 13528]
gi|300435638|gb|ADK15405.1| DNA topoisomerase I [Clostridium ljungdahlii DSM 13528]
Length = 734
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 164/628 (26%), Positives = 273/628 (43%), Gaps = 89/628 (14%)
Query: 10 VLNVAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L +AEKPSV + +A +L + +G EG ++T GHL
Sbjct: 4 ILVLAEKPSVGREIARVLKCRKKGNGWLEGEK------------------YIVTWALGHL 45
Query: 69 MELD----FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR-CQWLVLWLD 123
+ L +D++Y+ W D L + + K E+ R+ +V+ D
Sbjct: 46 VTLADPEAYDDKYKTWKLEDLPMLPKYLKLVVIKQTGKQFNAVKEQLNRKDVTEIVIATD 105
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FADAVDA 181
REGE +A +IE R + ++R S+ D+ I++ +NL +Q+ A
Sbjct: 106 AGREGELVARWIIEKAR---VNKPIKRLWISSQTDKAINEGFRNLKPSSQYDNLYRAAQC 162
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E D +G + TR ++T N LS G Q PTL +V R EI+ +
Sbjct: 163 RAEADWIVGLNVTR------------ALTCKHNAQLSAGRVQTPTLAMIVHREEEIKNFK 210
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGH----LFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+++++I T W G+ FD A + V + V + +K
Sbjct: 211 PKDYYSI----IGNANGYTLQWQNGNGHFNTFDENFANKVVSK-VNGQNGKILDVIKSDK 265
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTNLHG 356
KY P EL++ A+R F S++ T+ + + LY+ F++YPRT++ S+ ++
Sbjct: 266 KKYAPALYDLTELQRDANRLFGYSAKQTLSIMQRLYENYKFLTYPRTDSRYISA--DIVP 323
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESRWSQDH 414
+ E++ G Y++ ++ G R D K H I PT+ S+ S +
Sbjct: 324 TLPERLKAISVGNYSKFAMEIMRGKIRAHKGFVDDSKVSDHHAIIPTEEKVILSKLSNEE 383
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY----RFESW 470
K+Y+LVV+ FL+ + P +T V+ I GE F+ SG+VI +K + VY F+
Sbjct: 384 RKVYDLVVKRFLSVMLPPFEYVQTTVKAEINGENFAASGKVIKSKGWKAVYDKNEDFDDN 443
Query: 471 GGL--------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK--------- 513
GL V+P G T + + G T+PP +E LLS M+
Sbjct: 444 DGLHENQLKEQVLPNLNRGDSIKLTAVKMHKGQTKPPARFNEGTLLSAMENPQKYINMNK 503
Query: 514 ---------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELW 564
G+GT AT D I+KL + FY I+ PT+ G+ +V + + +L
Sbjct: 504 EYAKTLGETGGLGTVATRADIIEKLFNTFY-IEKKGKEIIPTSKGKQVV---ELVPEDLK 559
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLAN 592
P L + E+D+ +S G + + N
Sbjct: 560 SPLLTAKWETDLNLISKGKLNDKSFIGN 587
>gi|261419915|ref|YP_003253597.1| DNA topoisomerase III [Geobacillus sp. Y412MC61]
gi|319766729|ref|YP_004132230.1| DNA topoisomerase III [Geobacillus sp. Y412MC52]
gi|261376372|gb|ACX79115.1| DNA topoisomerase III [Geobacillus sp. Y412MC61]
gi|317111595|gb|ADU94087.1| DNA topoisomerase III [Geobacillus sp. Y412MC52]
Length = 697
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 177/616 (28%), Positives = 275/616 (44%), Gaps = 79/616 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L + + RY ++T GH
Sbjct: 1 MKSLVLAEKPSVARDIARVLGCKETHKPYFEGPRY-----------------IVTWALGH 43
Query: 68 LMELDFDERY-RKWHSCDPADLYHAPVRKHVPEDKKDIKKT------LEEEARR--CQWL 118
L+EL E Y RK+ + DL P + + K I++T +E A+R + +
Sbjct: 44 LVELKMPEDYDRKYETWRLEDLPIIPKKMGL----KVIRQTSHQFRAIERLAKRPDVKDV 99
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
++ D REGE +A ++E+ + + R S+ DR I + L Q+ +
Sbjct: 100 IIATDAGREGELVARWILEM---IGWTKPIWRLWISSQTDRAIRDGFRQLKPGAQFDRLY 156
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
AV R E D IG + +R ++T N LS G Q PTL ++ER
Sbjct: 157 QSAV-CRAEADWLIGLNVSR------------ALTTKYNDPLSAGRVQTPTLAMIIERER 203
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMR--GH-LFDYTSAVIIYEMCVQEPTATVTKV 292
EIQ+ +WTI +++ G+ T W R GH LFD A + +P A V V
Sbjct: 204 EIQSFVPVPYWTI----RAKIGSITAVWERHGGHRLFDQDEAKQLLARLDGQP-ARVVSV 258
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSS- 350
+++ K + P P EL++ A++ F S++ T+ V + LY Q ++YPRT++ S
Sbjct: 259 KRKRKSEPAPLPYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDSRYLPSD 318
Query: 351 --GTNLHGIVQEQIGHPD-WGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSS 405
T ++ + G+ D P + AA N DDK H I PT
Sbjct: 319 MEATMTERLLAMKSGYEDVIAPLLAKGKAKAAKRVFN------DDKVTDHHAIVPTDERL 372
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
SR S D KLY+L+ R FLA P T +I GE+F ++ + V
Sbjct: 373 NLSRLSTDERKLYDLIARRFLALFFPPYESETTTAVFDIGGEMFVAKETAVVNFGFKAVL 432
Query: 466 RFESWGGLVIPTYVH---GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
E PT H GQ L + T PP SEADLL+ M+K G+GT AT
Sbjct: 433 GKEETDA--KPTLSHLAEGQTLPSVQLEREQSFTEPPARYSEADLLAQMEKYGLGTPATR 490
Query: 523 HDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
D I++L++ ++ + RF PT G+ L+ + + EL P L + E +++ ++ G
Sbjct: 491 ADIIERLVE-TEVVERKDGRFYPTKKGKQLI---ELVNEELKSPELTARWERELEAIARG 546
Query: 583 NKSKADVLANCLQQMK 598
+ LAN +Q +
Sbjct: 547 KGNPQQFLANIRRQTQ 562
>gi|402573512|ref|YP_006622855.1| DNA topoisomerase III [Desulfosporosinus meridiei DSM 13257]
gi|402254709|gb|AFQ44984.1| DNA topoisomerase III [Desulfosporosinus meridiei DSM 13257]
Length = 726
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 163/630 (25%), Positives = 267/630 (42%), Gaps = 111/630 (17%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSV 64
L + EKPSV + +A IL+ NQ +G C + ++
Sbjct: 3 KTLVLTEKPSVGREIARILNCNQ---------------------KGNGCFIGPKYVVAWA 41
Query: 65 TGHLMEL----DFDERYRKWHSCDPADL---YHAPVRKHVPEDKKDIKKTLEEEARRCQW 117
GHL+ L +DE+Y+ W D L V K + +K ++ +
Sbjct: 42 LGHLVTLADPESYDEKYKSWKIEDLPMLPPKMELVVMKETSKQFGVVKNLMK--SPEIAD 99
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--F 175
L++ D REGE +A +I + ++R S+L +R I + +L ++
Sbjct: 100 LIIATDAGREGELVARWII---KKAGWRKPIKRLWISSLTERAIKEGFNHLKPGKEYESL 156
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A + R E D +G + TR ++T N LS G Q PTL VVER
Sbjct: 157 YAAAECRAEADWLVGLNVTR------------ALTCKYNAQLSAGRVQTPTLAMVVEREN 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWM----RGHLFDYTSAVIIYEMCVQEPTATVTK 291
EI+ ++++WTIN K T W + +FD A + + V +
Sbjct: 205 EIKKFVTKDYWTINAMAKG----FTLQWQDHQGQTRIFDKNKADQLLAK-ISGKAGEVVE 259
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSS 350
V+++ K ++PP EL++ A+R + S++ T V + LY+ ++YPRT++ S
Sbjct: 260 VKKEAKKEFPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYENHKIVTYPRTDSRYISE 319
Query: 351 GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP---------GSGGHDDKAHPPIHPT 401
++ + E++ GPY +D A + RN GS D H I PT
Sbjct: 320 --DIVATIPERLKSVALGPY----VDLARSILRNKPIITKRFVDGSKVSD---HHAIIPT 370
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY 461
+ +R S + K+Y+L+V+ FLA +S +T++++ I GE F+ G+++ K +
Sbjct: 371 EQPPTLARLSSEELKIYDLIVKRFLAVLSPAFEYEQTLIKVVINGEGFTAKGKIVKLKGW 430
Query: 462 LDVYRFESWGG-----------LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSC 510
VY +S G +P G F + L G T+PP +EA LLS
Sbjct: 431 QKVYEGQSRLGNESDNSDDEDEQNLPEIAKGDTFQNLVVKLKPGKTKPPARHTEATLLSA 490
Query: 511 MDKA-----------------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALV 553
M+ G+GT AT + I+KL + FY + PT+ G L+
Sbjct: 491 MEHPGKLIEDQKLREAMDQSHGLGTPATRAEIIEKLFNSFYMSRQGK-EIVPTSKGIQLI 549
Query: 554 MGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
+ EL P L + E + E+S G
Sbjct: 550 ---GLVPAELKSPVLTARWEQQLTEISKGK 576
>gi|297527156|ref|YP_003669180.1| DNA topoisomerase I [Staphylothermus hellenicus DSM 12710]
gi|297256072|gb|ADI32281.1| DNA topoisomerase I [Staphylothermus hellenicus DSM 12710]
Length = 723
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 160/607 (26%), Positives = 269/607 (44%), Gaps = 46/607 (7%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
++ +AEKP A +A LSKN IR +S Y Y Y I+ + +++ S GHL
Sbjct: 54 KIVVIAEKPKAANKIALALSKNP---IR--KSIYGIPY---YMIKTKNGLIIVASAAGHL 105
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQ---WLVLWLDCD 125
L D+ P Y + K KK + ++ C + V D D
Sbjct: 106 YGLHTDQ------YGYPVFRYEWKPLYQIGHKAKHTKKFITALSKLCSNADYYVNACDYD 159
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
EG I + +I + L RA+FS+L E+ ++ + L + +A R E+
Sbjct: 160 IEGSVIGYLIIYFHGDLEKSL---RAKFSSLTIGELRESFRKLTSLDWEMIEAGLCRHEL 216
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH--ESE 243
D G + +R L+ + + S + ++LS G Q PTL ++VE+ E + +
Sbjct: 217 DWIWGINISR---ALMSSVKMAS---GKRVILSAGRVQTPTLRYIVEKDIERRLFIPLPQ 270
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY--- 300
+IN S + E + +G + E+ V++ E+ KY
Sbjct: 271 YSLSINISKNNYEIHVEY---KGKAVETKKKA--KEIIKDIKNTGYLTVKKYEEKKYWLN 325
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PP + +L++ A+R +R S T +AE LY ISYPRT + N GI+ +
Sbjct: 326 PPPAFNLGDLQEEAARIYRFSPYKTQSIAEKLYLDALISYPRTNSQKLPPTLNYKGIMNK 385
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
++ LL G+ + P G DD AHP I+PT + +D +K+Y+L
Sbjct: 386 LSRINNYKELISNLLVETRGVLK-PVQGPKDDPAHPAIYPTGVKPKD--LGKDEWKIYDL 442
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGE---VFSTSGRVILAKNYLDVYRFESWGGLVIPT 477
+VR FLA + A + IV + + VF SGR IL +L Y F +P
Sbjct: 443 IVRRFLAAFASRARISHRIVYLEYPKDPSMVFMASGRKILELGWLRYYPFSMPEERFLPR 502
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
+ HG++ T ++ T+PP +S +L M+ GIGT+AT I+ L +R Y ++
Sbjct: 503 FQHGEKVKITKASIRKTYTKPPEKISRIKILRWMENVGIGTEATRARIIEILFNRKY-LR 561
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL---ANCL 594
R T++G ++ + E+ +L E +M+++ +G + + +V+ N L
Sbjct: 562 SVGGRVEATDLGLGIIEVLMEYFPEITSVSLTRYFEGEMEKIRLGIRRRDEVVRDAKNTL 621
Query: 595 QQMKACF 601
++ F
Sbjct: 622 IKLIVSF 628
>gi|158254458|dbj|BAF83202.1| unnamed protein product [Homo sapiens]
gi|193785232|dbj|BAG54385.1| unnamed protein product [Homo sapiens]
Length = 453
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 136/239 (56%), Gaps = 13/239 (5%)
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y + RF P ++G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL
Sbjct: 1 MYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQ 60
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVL 648
+Q+ K F++A K KL EA+ +F + Q+ A E +R+C C + +MVL
Sbjct: 61 QVQKYKQVFIEAVAKAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQCNK-DMVL 119
Query: 649 KKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPP 708
K ++G + C+ FP+CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP
Sbjct: 120 KTKKNGGFYLSCMGFPECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPP 179
Query: 709 GFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTA------SSNNGQQSNHRQRA 761
+ + CIGGCD+TLR+++++ +G P R P+ S N S H Q A
Sbjct: 180 TMPLEFVCCIGGCDDTLREILDLRFSGG--PPRASQPSGRLQANQSLNRMDNSQHPQPA 236
>gi|255526553|ref|ZP_05393461.1| DNA topoisomerase III [Clostridium carboxidivorans P7]
gi|296187531|ref|ZP_06855926.1| DNA topoisomerase [Clostridium carboxidivorans P7]
gi|255509738|gb|EET86070.1| DNA topoisomerase III [Clostridium carboxidivorans P7]
gi|296048053|gb|EFG87492.1| DNA topoisomerase [Clostridium carboxidivorans P7]
Length = 731
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 161/626 (25%), Positives = 273/626 (43%), Gaps = 86/626 (13%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKPSV + +A +L + + N + G+ ++T GHL+
Sbjct: 4 ILVLAEKPSVGREIARVLKCGK---------------KGNGCLEGE--KYIVTWALGHLV 46
Query: 70 ELD----FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR-CQWLVLWLDC 124
L +D++Y+ W D L + + K E+ R+ +V+ D
Sbjct: 47 TLADPEAYDDKYKTWKMEDLPMLPKYLKLVVIKQTSKQFNAVKEQLNRKDVVEIVIATDA 106
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FADAVDAR 182
REGE +A +IE R + ++R S+ D+ I++ +NL +Q+ A +R
Sbjct: 107 GREGELVARWIIEKAR---INKPIKRLWISSQTDKAINEGFRNLKPASQYDNLYRAAQSR 163
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E D +G + TR ++T N LS G Q PTL +V R EI+ +
Sbjct: 164 AEADWIVGLNVTR------------ALTCKHNAQLSAGRVQTPTLAMIVHREEEIKNFKP 211
Query: 243 EEFWTINCSHKSEEGTATFSWM--RGHL--FDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
+++++I S T W +GH FD A I V V V + +K
Sbjct: 212 KDYYSITGSANG----YTLQWQGGKGHFNTFDEDFANKIVSK-VNNQNGKVVDVTKSDKK 266
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTNLHGI 357
KY P EL++ A+R F S++ T+ + + LY+ F++YPRT++ S ++
Sbjct: 267 KYAPALYDLTELQRDANRLFGFSAKQTLSIMQRLYENYKFLTYPRTDSRYISD--DIVPT 324
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESRWSQDHY 415
+ +++ G Y++ ++ G R + K H I PT+ S+ S +
Sbjct: 325 LPDRLKAISVGNYSKFAMEIMKGKIRAHKGFVDNSKVSDHHAIIPTEERVNLSKLSNEER 384
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-- 473
K+Y+LVV+ FL+ + P +T V++ + GE F SG+VI +K + VY +
Sbjct: 385 KVYDLVVKRFLSVLLPPFEYVQTTVKVEVNGENFVASGKVIKSKGWKAVYDKDEDFDDND 444
Query: 474 ---------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK----------- 513
V+P G T + + G T+PP +E LLS M+
Sbjct: 445 AHENELKEQVLPQINKGDSIKLTGVKMHKGQTKPPARFNEGTLLSAMENPQKYINMNKEY 504
Query: 514 -------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKP 566
G+GT AT D I+KL + FY ++ PT+ G+ LV + + +L P
Sbjct: 505 AKTLGETGGLGTVATRADIIEKLFNTFY-LEKKGKEIIPTSKGKQLV---ELVPEDLKSP 560
Query: 567 NLRSMMESDMKEVSVGNKSKADVLAN 592
L + E+D+ +S G + + N
Sbjct: 561 LLTAKWETDLNLISKGKLNDKSFIGN 586
>gi|315645228|ref|ZP_07898353.1| DNA topoisomerase III [Paenibacillus vortex V453]
gi|315279270|gb|EFU42576.1| DNA topoisomerase III [Paenibacillus vortex V453]
Length = 711
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 195/756 (25%), Positives = 320/756 (42%), Gaps = 122/756 (16%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPSVAK +A ++ RE + Y + ++ ++T GH
Sbjct: 1 MKVLVLAEKPSVAKEIARVMGS------REKQKNYFEGPKY-----------IVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQWLVLW 121
L+ L D+D++Y+ W D L K + E K T++ +R +++
Sbjct: 44 LVGLAEPEDYDKKYQTWVLEDLPILPDNTRLKVLKETSHQFK-TVQHLMKRQDVGEMIIA 102
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---DA 178
D REGE +A ++++ + + +R S+ D+ I + +L P Q F ++
Sbjct: 103 TDAAREGELLARWILKMAK---WNKPFKRLWISSQTDKAIKEGFASL-KPGQQFDRLYES 158
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
R E D +G + TR ++T N LS G Q PTLG +++R EI
Sbjct: 159 ARCRAEADWMVGLNVTR------------ALTTKFNAQLSAGRVQTPTLGMIMDREKEIV 206
Query: 239 AHESEEFWTINCSHKSEEGTATFSWM----RGHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
S+E+ T+ +++ G+ SW G LF+ A + + ++ T +T V++
Sbjct: 207 HFRSQEYETL----QADLGSFEVSWRPAGGDGRLFEKDKAAKL-KSKLEGSTGKITSVKK 261
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTN 353
EK + P EL++ A+R F S++ T V + LY Q ++YPRT++ +S +
Sbjct: 262 SEKNEPHPLAYDLTELQRDANRRFGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLTS--D 319
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWR---NPGSGGHDDKA---HPPIHPTKFSSGE 407
+ G ++E++ GPYA A L R +PG DD H I PT+ +
Sbjct: 320 MVGTLKERLSSIAIGPYA----SLARPLLRKNISPGKRVVDDSKVTDHHAIIPTEQTVLL 375
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
++ S D KLY+L+VR F++ PA V + I GE+ G I + +VY
Sbjct: 376 NQLSVDERKLYDLIVRRFISLFYPPARYDNVSVTVQIEGELLYAKGTTIKDSGWREVYGG 435
Query: 468 E--------------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK 513
+ + G ++P G+ L G T+PP +EA LLS M+K
Sbjct: 436 DYDDDGDDEPEDAQGASSGKLLPELKEGETVKVVRCVLKPGRTQPPKRYNEAALLSQMEK 495
Query: 514 AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMME 573
G+GT AT D I+KL+ I+ PT G+ L+ + + EL P L + E
Sbjct: 496 HGLGTPATRADIIEKLVSS-DTIERQGQSLHPTGKGKQLI---ELVAPELRTPELTARWE 551
Query: 574 SDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGE 633
++++ ++ G L K D + G D +
Sbjct: 552 AELERIAKGQGKPEPFLRGIRDMTKKLVTDVK-------------------GSDAEYKPH 592
Query: 634 VV--RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTP 691
V C C + ++ KK++ G L+V C + E ++ C C
Sbjct: 593 NVSNSHCPDCG-TRLLEKKTKRGKLLV-------CPSEDCGYKRSGEKRLSNRRCPQC-- 642
Query: 692 GPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQ 727
K E G V LGC G ETL+Q
Sbjct: 643 ------HKKMEMKEGKAGMFVQCLGC--GITETLKQ 670
>gi|387927675|ref|ZP_10130354.1| DNA topoisomerase III [Bacillus methanolicus PB1]
gi|387589819|gb|EIJ82139.1| DNA topoisomerase III [Bacillus methanolicus PB1]
Length = 696
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 167/613 (27%), Positives = 276/613 (45%), Gaps = 76/613 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L Q ++ +E N I +T GH
Sbjct: 1 MKSLVLAEKPSVAREIARVLGCKQ---------QHKHYFEGNKYI--------VTWALGH 43
Query: 68 LMELD----FDERYRKWHSCDPADLYHAPVRKHVPEDK--KDIKKT------LEEEARR- 114
L+EL +D +Y+ W L P+ +PE K IK+T +E ++R
Sbjct: 44 LIELKMPEHYDTKYKTWR------LEDLPI---IPEKMGLKVIKQTSHQFRGIENLSKRP 94
Query: 115 -CQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQ 173
+ ++ D REGE +A ++ + ++ + R S+ D+ I +L Q
Sbjct: 95 DIKDCIIATDAGREGELVARWIL---KKIHWKKPILRLWISSQTDKAIRDGFNHLKPGKQ 151
Query: 174 WFA--DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVV 231
+ A D+ R E D IG + TR ++T N LS G Q PTL ++
Sbjct: 152 FDALYDSAVCRAEADWLIGLNVTR------------ALTTKYNDPLSAGRVQTPTLAMMM 199
Query: 232 ERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRG---HLFDYTSAVIIYEMCVQEPTAT 288
+R EIQ +E+WTI K++ G+ + SW R +F +A I++ A
Sbjct: 200 DREKEIQKFVPKEYWTI----KAQIGSLSASWERNGEKRIFSKETAEKIHDKLAGN-KAI 254
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDS 347
V + +++K + P P EL++ A++ F S++ T V + LY Q ++YPRT++
Sbjct: 255 VVSIDRKKKSEQQPLPYDLTELQRDANKRFGFSAKKTSTVLQRLYEQYKLVTYPRTDSRY 314
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
++ + + Q + + LL + + H I PT+
Sbjct: 315 LTTDMEATMLDRLQAMSSGYKEEVRPLLANKGRVIARRVFNNEKVTDHHAIIPTEERLNI 374
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEI-NIAGEVFSTSGRVILA---KNYLD 463
S S D KLY+L+ R FLA PA ET+ + ++ GE S+ V++ K L
Sbjct: 375 SDLSADERKLYDLIARRFLALFY-PAFQYETVHAVFDVNGETLSSRETVVVDAGFKAILS 433
Query: 464 VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
E G + GQ + + +D +T PP SEAD+LS M+K G+GT AT
Sbjct: 434 KNDDEPDSG-QLGDIAKGQSYTVKNIEMDKKLTEPPLRYSEADILSLMEKYGLGTPATRA 492
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
D I++L++ ++ N RF PT G+ L+ +D EL P L + E +++ ++ G
Sbjct: 493 DIIERLVE-TEVVERQNGRFYPTKKGKQLIELVND---ELKSPELTARWEKELEAIARGK 548
Query: 584 KSKADVLANCLQQ 596
+ L N +Q
Sbjct: 549 GNPKTFLQNIRKQ 561
>gi|392956610|ref|ZP_10322136.1| DNA topoisomerase III [Bacillus macauensis ZFHKF-1]
gi|391877107|gb|EIT85701.1| DNA topoisomerase III [Bacillus macauensis ZFHKF-1]
Length = 698
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 165/614 (26%), Positives = 263/614 (42%), Gaps = 72/614 (11%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L Q + + I G H ++T GH
Sbjct: 1 MKALVLAEKPSVARDLARVLGCTQTSK---------------HFIEGP--HYVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCD----PADL---YHAPVRKHVPEDKKDIKKTLEEEARR-- 114
L+EL D+++ Y+ W D P ++ + VR K +E A+R
Sbjct: 44 LVELKMPEDYNKEYKTWRMEDLPIIPKEMGLKLISGVRHQY--------KGIESLAKRKD 95
Query: 115 CQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW 174
++ D REGE +A ++E R ++R S+ DR I + L Q+
Sbjct: 96 ISSFIIATDAGREGELVARWILEKLR---WKKPVKRLWISSQTDRAIKDGFKQLKPAAQY 152
Query: 175 ---FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVV 231
+ AV R E D IG + TR ++T N LS G Q P L ++
Sbjct: 153 DTLYQSAV-CRSEADWLIGLNVTR------------ALTTKYNEQLSAGRVQTPALSMIL 199
Query: 232 ERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRG---HLFDYTSAVIIYEMCVQEPTAT 288
ER EI+A +E+WTI +++ G +W + LFD A I Q+ AT
Sbjct: 200 EREKEIKAFVPKEYWTI----QAKLGPFLATWEKNGERRLFDRKVAEEIVAQAKQQ-KAT 254
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDS 347
V ++++EK++ P P EL++ A+R F S++ T V ++LY+ ++YPRT++
Sbjct: 255 VHSLQKKEKIESQPLPYDLTELQRDANRRFGFSAKKTAGVLQNLYERYKLVTYPRTDSKY 314
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
+ + Q + Q L + + H I PT
Sbjct: 315 LTIDMKNTMNDRLQALSSSYREEVQPALKNKGQVLLKKVFNNEKVTDHHAIIPTDEPPHL 374
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
S D K+Y+++VR FLA P +++ E FS + + V
Sbjct: 375 GDLSNDERKVYDMIVRRFLALFYAPFQSETVTATLHVNRETFSVKETTVTNLGFKSVTGK 434
Query: 468 ESWGGLV--IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
++ L I + GQ + ++ L +T PP +EADLLS M+K G+GT AT D
Sbjct: 435 DAEQPLSTSIRSVKEGQAYTVSSCELTKKLTEPPARYNEADLLSKMEKYGLGTPATRADI 494
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
I++LL I N R PT G+ L+ D + L P L + E +++ ++ G
Sbjct: 495 IERLLS-TETIDRQNNRLHPTPKGKQLI---DLVNEALKSPELTAKWEKELENIARGKGD 550
Query: 586 KADVLANCLQQMKA 599
D L N Q +A
Sbjct: 551 PQDFLTNIRNQTQA 564
>gi|326803546|ref|YP_004321364.1| DNA topoisomerase I [Aerococcus urinae ACS-120-V-Col10a]
gi|326650707|gb|AEA00890.1| DNA topoisomerase I [Aerococcus urinae ACS-120-V-Col10a]
Length = 696
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 149/616 (24%), Positives = 258/616 (41%), Gaps = 74/616 (12%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
K D K L++EA++ + L D DREGE IA+ + + + + R ++ +
Sbjct: 68 KGDTIKDLKKEAKKANNIYLASDPDREGEAIAWHLAHILKLDPKEDI--RVTYNEITKDT 125
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
+ +A+ N ++ DA AR+ +D +G + + +K LS G
Sbjct: 126 VKEAINNPRAIDKDLVDAQQARRILDRLVGYNLSPILWAKVKKG------------LSAG 173
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATF----SWMRGHLFDYTSAVI 276
Q L VV+R EI+ EE+W+I ++G TF S +G D +
Sbjct: 174 RVQSVALKMVVDREDEIRNFVPEEYWSIEGVF--QKGKETFKANASKYKGKKIDLKNEDD 231
Query: 277 IYEMC--VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ 334
+ + + V + ++++ + P P +T L++ AS+ R + TM VA+ LY+
Sbjct: 232 VKALMANLSSDQFEVQNLTKKQRKRNPQKPFTTSSLQQEASKRLRFRTRKTMMVAQQLYE 291
Query: 335 A---------GFISYPRTETDSFSSGTNLHG--IVQEQIGHPDWGPYAQRLLDHAAGLWR 383
G I+Y RT++ S G +QE+ G G G
Sbjct: 292 GIKLGSEGTVGLITYMRTDSTRISEGAKQEAGQFIQEKYGKEYIG----------KGTSG 341
Query: 384 NPGSGGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETI 439
G G D AH I PT S E+ S+D +KLY L+ F+A PAV
Sbjct: 342 ASGQGAQD--AHEAIRPTSAFRHPDSVEAYLSKDQFKLYSLIWSRFMASEMAPAVYDTVA 399
Query: 440 VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPP 499
++ F +G I YL VY + ++P +G++ LT + T+PP
Sbjct: 400 CDLVQNDVSFRANGSKIKFTGYLRVYPDNNEKDNLLPELENGEKVKSKELTPNQHFTQPP 459
Query: 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
+EA L+ +++ G+G +T ++ L+ R+Y +K RF PT +GE + +
Sbjct: 460 ARYTEASLIKTLEELGVGRPSTYSPTLETLIKRYY-VKLEARRFEPTELGEIVNSLISEF 518
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF--LDARLKKVKLLEAMGI 617
++ P + +E ++ V GNK+ DV+ Q D ++K+++ +
Sbjct: 519 FPDIVDPQFTANLEDELDHVEDGNKNWIDVVDAFYQPFSKDIEKADQEMEKIEIKDEPAG 578
Query: 618 F------------------FERWSGGEDQQAAGEVVRQCGI----CQESNMVLKKSRDGN 655
F F S D + +V++ G+ C+E +V +KS+
Sbjct: 579 FDCDVCGHPMVIKLGRYGKFYACSNFPDCRNTKAIVKEIGVNCPTCKEGQVVERKSKKKR 638
Query: 656 LMVGCLAFPQCRNAVW 671
+ GC +P C W
Sbjct: 639 IFYGCSRYPDCDFVSW 654
>gi|430746289|ref|YP_007205418.1| DNA topoisomerase I [Singulisphaera acidiphila DSM 18658]
gi|430018009|gb|AGA29723.1| DNA topoisomerase I, bacterial [Singulisphaera acidiphila DSM
18658]
Length = 896
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 166/617 (26%), Positives = 258/617 (41%), Gaps = 77/617 (12%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
KKD L+ EA + + + L D DREGE IA+ + + + + RR F + +R
Sbjct: 125 KKDTVGELKREAAKAEMVYLATDPDREGEAIAWHLQQALDLPDERV--RRVMFHEITERA 182
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
+ +A Q++ N +A AR+ +D RF L V LS G
Sbjct: 183 VKEAFQHVGPINMEMVNAQQARRFLD--------RFVGYQLSPLLWSKVARH----LSAG 230
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDY--------- 271
Q + + +R EI+A SEE+W I S E TA L ++
Sbjct: 231 RVQSVAVRLIADREKEIRAFVSEEYWKITASVSPEGATAESDRFEALLTEWQGAKFEAGN 290
Query: 272 -TSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAE 330
T A I + P V + + EKL P T L+++ + R S + TMKVA+
Sbjct: 291 ETDATAIRDALAVAPF-KVASIEEVEKLDKADAPFKTSTLQQQGAIRLRFSGKRTMKVAQ 349
Query: 331 DLYQA---------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
+LY+ G I+Y RT DS S V+E I D+G R L
Sbjct: 350 ELYEGIDVGTDGPVGLITYMRT--DSLSVSKEAIENVRELI-KSDYG---DRYLPAKPHR 403
Query: 382 WRNPGSGGHDDKAHPPIHPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVGAE 437
+ +G +AH I PT S + R S D +KLY+L+ R F+A PAV A
Sbjct: 404 Y---AAGKSAQEAHEAIRPTDLSLTPDKIKGRLSIDQFKLYQLIYRRFVASQMTPAVFAV 460
Query: 438 TIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL----VIPTYVHGQQFIPTTLTLDS 493
T V I +F + G+++ Y R S G ++P GQ +L
Sbjct: 461 TNVSIAAGEGLFKSQGKILKFDGY---RRVLSPAGKQEDSLLPPLASGQALDLHSLAPTQ 517
Query: 494 GVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALV 553
T+PPP +EA L+ ++K IG +T I+ + R Y ++ RF T++G +
Sbjct: 518 HFTQPPPRFTEATLIKALEKENIGRPSTYAPIIQTIQTRLY-VEQKERRFFATDLGMIVT 576
Query: 554 MGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
+ ++ + ME ++ E++ + VL + F DA K ++
Sbjct: 577 DLLVEHFPKIMDLKFTAKMEDELDEIASAKEEMVKVLDDFYHP----FQDALKVAEKQMQ 632
Query: 614 AMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
+ Q + EV CG + MV+K S+ G + GC +P+C++ +
Sbjct: 633 KV------------QVPSSEVCLVCG----APMVVKFSKTGQFL-GCSKYPECKSTRPMD 675
Query: 674 GSVSEAAV-TTNTCNSC 689
GS AAV T + C C
Sbjct: 676 GSARPAAVETEHICTKC 692
>gi|320102637|ref|YP_004178228.1| DNA topoisomerase I [Isosphaera pallida ATCC 43644]
gi|319749919|gb|ADV61679.1| DNA topoisomerase I [Isosphaera pallida ATCC 43644]
Length = 964
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 182/700 (26%), Positives = 291/700 (41%), Gaps = 95/700 (13%)
Query: 23 VAGILS---KNQGLRIREGRSRYNKIYEF---NYSIRGQPCHMLMTSVTGHLMELDFDER 76
AG+ S K Q L I E + I +F Y ++ H+ + +++ +D D
Sbjct: 109 TAGVGSRSGKRQALVIVESPKKAIAIGKFLGSGYVVKASKGHV--RDLPKNVLGIDVDHE 166
Query: 77 YRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVI 136
YR P + +P+ K+D L+ +A R + L D DREGE IA+ +
Sbjct: 167 YR-------------PTYEIIPK-KEDTISELKRDANRADVVYLATDPDREGEAIAWHLK 212
Query: 137 EVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRF 196
E + + RR RF + ++ + +A Q+ + DA AR+ +D +G ++
Sbjct: 213 EALELPDEKV--RRVRFHEITEKAVREAFQHAGPIDHHKVDAQQARRLMDRLMGYPLSQ- 269
Query: 197 QTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW----TINCSH 252
+L K R+L LS G Q + +VER EI+A EE+W T++
Sbjct: 270 --LLWKKVA-------RHLNLSAGRVQSVAVRLIVEREKEIRAFVPEEYWEITATLSAQG 320
Query: 253 KSEE---GTATFSWMRGHLF--DYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
K++E TA + +G F D+ + + V V EK P P T
Sbjct: 321 KTDELDRFTAKLAEWKGSKFKVDHETQARAIRDALTAAEFVVRSVEDVEKKDPPAPPFKT 380
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQA---------GFISYPRTETDSFSSGTNLHGIV 358
L+++AS FR SS+ TM +A+ LYQ G I+Y RT DS V
Sbjct: 381 STLQQQASIRFRFSSDRTMSIAQQLYQGIDLGDGNTVGLITYMRT--DSLRVSDEAIKGV 438
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH-DDKAHPPIHPTKFS----SGESRWSQD 413
+E I A R D + N G +AH I PT S S ++R + D
Sbjct: 439 REVI--------ASRYGDAYLPVKPNQYEAGKLAQEAHEAIRPTDLSLTPESIQNRLTHD 490
Query: 414 HYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFE-SWGG 472
+KLY+L+ R F+A PA+ A T V I VF T G+++ Y V
Sbjct: 491 QFKLYQLIYRRFVASQMTPAIFAVTNVTIEAGEGVFKTQGKMLKFDGYRKVLPPAGKQED 550
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
++P V Q L T+PPP +EA L+ ++K IG +T I+K+ +R
Sbjct: 551 ALLPPLVPHQILDLHALEPSQHFTQPPPRYNEASLIKALEKENIGRPSTYATIIQKIQER 610
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y ++ + RF TN+G + + ++ S +E ++ + VL
Sbjct: 611 NY-VEQKDRRFYATNLGMVVTDLLVEHFPKMLDLKYTSHIEDELDRIMSAEARMVQVLDE 669
Query: 593 CLQQMKACF--LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKK 650
+ + R+ KV++ + +V CG + MV K
Sbjct: 670 FYHPFQDALKVAETRMPKVQI------------------PSDKVCPTCG----APMVEKY 707
Query: 651 SRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTN-TCNSC 689
++ G + GC +P C + G++ +AAV T C C
Sbjct: 708 NKAGKFL-GCSRYPDCTTIMSADGTLKKAAVETEYQCLKC 746
>gi|297619292|ref|YP_003707397.1| DNA topoisomerase I [Methanococcus voltae A3]
gi|297378269|gb|ADI36424.1| DNA topoisomerase I [Methanococcus voltae A3]
Length = 828
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 164/691 (23%), Positives = 297/691 (42%), Gaps = 55/691 (7%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EKP+VAK +A L K + + +K+ + +G+ ++ S GHL
Sbjct: 4 LIICEKPNVAKKIADALGKPK-------KKSQSKVPYYEVDTKGKTYYV--ASAVGHLYT 54
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK---TLEEEARRCQWLVLWLDCDRE 127
L ++ K+ D+ AP E K+ ++K L++ ++ + D D E
Sbjct: 55 L-IEKNKTKFGDYPTYDIDWAPA--STVEGKEYVQKYINVLKKLSKDANEYYVATDWDIE 111
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE I + + + + +R RFS+L +EI ++ +N + DA D+R +ID
Sbjct: 112 GELIGYHALHHACGQD---IAKRMRFSSLTKKEILKSFENTDSIDFGLVDAGDSRHKIDW 168
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
G + +R + + R +S G Q P L F+VE+ EIQ +W
Sbjct: 169 FFGINISRALMQAISSAK-------RWKTMSTGRVQGPALAFLVEKELEIQKFVPVPYWV 221
Query: 248 INCSHKSEEGTATFSWMRGH----LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK--YP 301
IN + K+E + H +D A Y + A V ++++ +K YP
Sbjct: 222 INANLKNENENNEVPLIATHEIDKFWDEEEANKAYGNVEGQKEAIVEEIKKTKKKIKPYP 281
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN-LHGIVQE 360
P+ L L++ A FR S + T ++A+ LY+ G+ SYPRT + ++ ++ +
Sbjct: 282 PFDLGA--LQREAHNAFRYSPKRTQEIAQKLYEKGYCSYPRTSSQKLPKDMEYMNEVLGK 339
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
+ ++G YA +L+ P G DD AHP IHP + D KLY L
Sbjct: 340 LLKSKEYGKYASEILEKNL----KPIEGKKDDPAHPAIHPVDVP--KEALPDDEQKLYNL 393
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH 480
+ R LA A + + ++I GE F SG + + ++Y F + +P
Sbjct: 394 IARRALAAYWDDAEREYSKITVDINGEKFKLSGSRTTHEGWHEIYYFTKFDENELPELKK 453
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G+ + + T+PP + A ++ ++ +GT AT D ++KL R Y I+D +
Sbjct: 454 GKVLPIESTEKLAKETKPPKRYTMASIIKELENRHLGTKATRADILEKLTKRGYVIEDGS 513
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
+ T +G ++ E+ + L +E ++++ K V+ ++
Sbjct: 514 --LSVTELGIGVIETLKKYCPEIVEETLTRDLEDKLEKIQDHKIKKEQVIDETKVKLSQI 571
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
+ R K+ ++ + + + S Q G+ +CG ++++ K + + VGC
Sbjct: 572 LDEFRKKEKEIGKELVEKID--STNRSLQLIGKC--KCG----GDLIIIKYKGKSRFVGC 623
Query: 661 LAFPQCRNAVWLP--GSVSEAAVTTNTCNSC 689
+P C LP G++ V C C
Sbjct: 624 SNYPDCDITYPLPQKGAIK---VPNKVCEVC 651
>gi|345861856|ref|ZP_08814105.1| DNA topoisomerase III family protein [Desulfosporosinus sp. OT]
gi|344325051|gb|EGW36580.1| DNA topoisomerase III family protein [Desulfosporosinus sp. OT]
Length = 725
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 169/638 (26%), Positives = 268/638 (42%), Gaps = 113/638 (17%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSV 64
L + EKPSV + VA IL+ NQ +G C + ++
Sbjct: 3 KTLVLTEKPSVGREVAKILNCNQ---------------------KGNGCFIGSKYIVVWA 41
Query: 65 TGHLMELD----FDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQ 116
GHL+ L +DE+Y+ W D PA + V K + +K ++
Sbjct: 42 LGHLVTLADPELYDEKYKTWKLEDLPMLPAKM-ELVVMKETSKQFSVVKNLMK--MPEID 98
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLV---DPNQ 173
L++ D REGE +A +I + ++R S+L +R I + NL D
Sbjct: 99 QLIIATDAGREGELVARWII---KKAGWRKPIKRLWISSLTERAIKEGFNNLKPGRDYEP 155
Query: 174 WFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER 233
FA A + R E D +G + TR ++T N LS G Q PTL VVER
Sbjct: 156 LFA-AAECRAEADWLVGLNVTR------------ALTCKHNAQLSAGRVQTPTLAMVVER 202
Query: 234 YWEIQAHESEEFWTINCSHKSEEGTATFSWM----RGHLFDYTSAVIIYEMCVQEPTATV 289
EI+ +++W+I K + W + +FD A + + +
Sbjct: 203 ENEIRQFVPKDYWSI----KVLVNEISVHWQDKNGQTRIFDKNKADQLVTKVTGQ-AGEI 257
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSF 348
V+++ K + PP EL++ A+R + S++ T V + LY+ ++YPRT++
Sbjct: 258 LDVKKEAKKELPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYENHKLVTYPRTDSRYI 317
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP---------GSGGHDDKAHPPIH 399
S ++ + E++ GPY +D A + RN GS D H I
Sbjct: 318 SE--DIVSTLPERLKSIALGPY----VDFARSILRNKLIITKRFVDGSKVTD---HHAII 368
Query: 400 PTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAK 459
PT+ SR S + K+Y+L+VR FLA +S P +T+V + + GE F+ G+VI K
Sbjct: 369 PTEQPPTLSRLSSEELKIYDLIVRRFLAVLSPPFEYEQTLVRVGVKGENFTAKGKVIKHK 428
Query: 460 NYLDVYRF---------ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSC 510
+ VY + G +P G+ ++ L + T+PP +EA LLS
Sbjct: 429 GWRKVYEGSTSPDDKEEDGEGEQTLPELRKGEMLKNLSVKLVASKTKPPARHTEATLLSA 488
Query: 511 MDKA-----------------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALV 553
M+ G+GT AT + I+KL + FY + PT+ G L+
Sbjct: 489 MEHPGKLIDDQKLREAMDQSHGLGTPATRAEIIEKLFNSFYMNRQGKD-IIPTSKGIQLI 547
Query: 554 MGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
+ EL P L + E + E+S G + LA
Sbjct: 548 ---GLVPPELKSPELTAKWEQQLTEISKGRVNSQTFLA 582
>gi|297530124|ref|YP_003671399.1| DNA topoisomerase III [Geobacillus sp. C56-T3]
gi|297253376|gb|ADI26822.1| DNA topoisomerase III [Geobacillus sp. C56-T3]
Length = 697
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 177/616 (28%), Positives = 274/616 (44%), Gaps = 79/616 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L Q + +E I +T GH
Sbjct: 1 MKSLVLAEKPSVARDIARVLGCKQA---------HKHYFEGKQHI--------VTWALGH 43
Query: 68 LMELDFDERY-RKWHSCDPADLYHAPVRKHVPEDKKDIKKT------LEEEARR--CQWL 118
L+EL E Y RK+ + DL P + + K I++T +E A+R + +
Sbjct: 44 LVELKMPEDYDRKYETWRLEDLPIIPKKMGL----KVIRQTSHQFRAIERLAKRPDVKDV 99
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
++ D REGE +A ++E+ + + R S+ DR I + L Q+ +
Sbjct: 100 IIATDAGREGELVARWILEM---IGWTKPIWRLWISSQTDRAIRDGFRQLKPGAQFDRLY 156
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
AV R E D IG + +R ++T N LS G Q PTL ++ER
Sbjct: 157 QSAV-CRAEADWLIGLNVSR------------ALTTKYNDPLSAGRVQTPTLAMIIERER 203
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMR--GH-LFDYTSAVIIYEMCVQEPTATVTKV 292
EIQ+ +WTI +++ G+ T W R GH LFD A + +P A V V
Sbjct: 204 EIQSFVPVPYWTI----RAKIGSITGVWERHGGHRLFDQDEAKQLLARLDGQP-ARVVSV 258
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSS- 350
+++ K + P EL++ A++ F S++ T+ V + LY Q ++YPRT++ S
Sbjct: 259 KRKRKSEPAPLLYDLTELQRDANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDSRYLPSD 318
Query: 351 --GTNLHGIVQEQIGHPD-WGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSS 405
T ++ + G+ D P + AA N DDK H I PT
Sbjct: 319 MEATMTGRLLAMKSGYEDVIAPLLAKGKAKAAKRVFN------DDKVTDHHAIVPTDERL 372
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
SR S D KLY+L+ R FLA P T +I GE+F ++ + V
Sbjct: 373 NLSRLSTDERKLYDLIARRFLALFFPPYESETTTAVFDIGGEMFVAKETAVVNFGFKAVL 432
Query: 466 RFESWGGLVIPTYVH---GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
E PT H GQ L + T PP SEADLL+ M+K G+GT AT
Sbjct: 433 GKEETDA--KPTLSHLAEGQTLPSVQLEREQSFTEPPARYSEADLLAQMEKYGLGTPATR 490
Query: 523 HDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
D I++L++ ++ + RF PT G+ L+ + + EL P L + E +++ ++ G
Sbjct: 491 ADIIERLVE-TEVVERKDGRFYPTKKGKQLI---ELVNEELKSPELTARWERELEAIARG 546
Query: 583 NKSKADVLANCLQQMK 598
+ LAN +Q +
Sbjct: 547 KGNPQQFLANIRRQTQ 562
>gi|392424532|ref|YP_006465526.1| DNA topoisomerase III [Desulfosporosinus acidiphilus SJ4]
gi|391354495|gb|AFM40194.1| DNA topoisomerase III [Desulfosporosinus acidiphilus SJ4]
Length = 728
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 166/635 (26%), Positives = 278/635 (43%), Gaps = 97/635 (15%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
L + EKPSV + VA IL + R+G N + G+ ++ GHL
Sbjct: 3 KTLVLTEKPSVGREVARILKCS-----RQG----------NGCLIGE--KYIVVWALGHL 45
Query: 69 MELD----FDERYRKWHSCD----PADLYHAPVRKHVPE--DKKDIKKTLEEEARRCQWL 118
+ L +D Y+ W + D PA + +R+ + K++ + E + L
Sbjct: 46 VTLADPEAYDASYKIWRAEDLPMLPAKMELVVIRETAKQFGIVKNMMRNPEVDE-----L 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD- 177
++ D REGE +A +I + ++R S+L +R I +L P + F
Sbjct: 101 IIATDAGREGELVARWII---KKAGWRKPIKRLWISSLTERAIRDGFNHL-RPGKDFETL 156
Query: 178 --AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A + R E D +G + TR ++T N LS G Q PTL +VER
Sbjct: 157 YAAAECRAEADWLVGLNVTR------------ALTCKFNAQLSAGRVQTPTLAMIVEREK 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQ 295
EI+ +++W++ S +S + + +F+ A I P + ++++
Sbjct: 205 EIKEFVPQDYWSVAASAQSFDLRWQDKNGQTRIFNKIKADEILTKVKGHP-GEIIDIKKE 263
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTNL 354
K + PP EL++ A+R F S++ T + + LY+ ++YPRT++ S ++
Sbjct: 264 AKHEPPPLAYDLTELQRDANRKFGFSAKTTSNIMQQLYENHKLVTYPRTDSRYISD--DI 321
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWR---NPGSGGHDDKA---HPPIHPTKFSSGES 408
+ E++ GPY ++ A G+ R N D+ H I PT+ + +
Sbjct: 322 VPTLPERLKSVAQGPY----VNLARGILRTKPNVTKRFVDNSKVSDHHAIIPTEQPAMLN 377
Query: 409 RWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY--- 465
R S D K+Y+L+VR FLA + P +T V++ + GEVF+T GR++L K + DVY
Sbjct: 378 RLSSDELKIYDLIVRRFLAVLLPPFEYQQTTVKMKVNGEVFTTKGRIVLKKGWKDVYAGD 437
Query: 466 --------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA--- 514
E+ G +P G + ++ LDS T+PP +EA LL M+
Sbjct: 438 YTGAEDEDEGEAQGLQTLPEISLGDRLKSLSIRLDSHKTKPPSRHTEATLLYAMEHPAQM 497
Query: 515 --------------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
G+GT AT + I+KL + FY + PT+ G L+ + +
Sbjct: 498 IEDRQLRDIMAQSHGLGTPATRAEIIEKLFNSFYMNRQGK-EIVPTSKGIQLI---NLVP 553
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
EL P L + E + E+S G + L + Q
Sbjct: 554 EELKSPELTAQWEQQLNEISKGRVNAQTFLKDMRQ 588
>gi|149915651|ref|ZP_01904177.1| DNA topoisomerase I [Roseobacter sp. AzwK-3b]
gi|149810543|gb|EDM70386.1| DNA topoisomerase I [Roseobacter sp. AzwK-3b]
Length = 839
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 157/607 (25%), Positives = 267/607 (43%), Gaps = 75/607 (12%)
Query: 94 RKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR---AVNCHLVLRR 150
RKHV K I L+++ L+L D DREGE I++ + E R A+ + R
Sbjct: 59 RKHV----KAIADALKDD----DTLILATDPDREGEAISWHLEEALRKRKAIGKTTAVSR 110
Query: 151 ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT 210
F+A+ + +A++N + + +A AR+ +D +G + + L
Sbjct: 111 VVFNAITKTAVTEAMKNPREIDGDLVEAYLARRALDYLVGFNLSPVLWRKLPGAR----- 165
Query: 211 DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRGH 267
S G Q L +VER EI+A ++ E+W++ + + ++ A + + G
Sbjct: 166 -------SAGRVQSVCLRLIVEREMEIEAFKAREYWSVKALLSTPRGQDFEARLTSLAGK 218
Query: 268 LFDY--TSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSS 322
D EM VQ T+ TVT V + + P P T L++ ASR F M +
Sbjct: 219 KLDRYDIENATQAEMAVQAITSRDLTVTSVEAKPASRNPSPPFMTSTLQQEASRKFGMGA 278
Query: 323 EHTMKVAEDLYQAGFISYPRTE-TDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
TM A+ LY+AG+I+Y RT+ D + +++ ++ P + R +
Sbjct: 279 RQTMSAAQRLYEAGYITYMRTDGIDMAPEAVHAARDAIKELYGAEYVPSSPR-------M 331
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGES---RWSQDHYKLYELVVRHFLACVSQPAVGAET 438
++N + AH I PT+ + S D KLY+L+ + LAC + A T
Sbjct: 332 YKNKAKNAQE--AHECIRPTEMTRDASAIKTTDADQRKLYDLIWKRTLACQMESARLERT 389
Query: 439 IVEI-NIAGEV-FSTSGRVILAKNYLDVYRFESWGGLV------IPTYVHGQQFIPTTLT 490
VEI + G+V +G+V+L +L +Y +P G + ++T
Sbjct: 390 TVEIGSRDGQVGLRATGQVVLFDGFLKIYEEGRDDQAGDDDDNRLPQITEGDKTEKRSVT 449
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
+ T+PPP +EA L+ M++ GIG +T + + +R Y KD N R P + G
Sbjct: 450 PEQHFTQPPPRYTEATLVKKMEELGIGRPSTYASIVTTIQEREYVRKDKN-RLIPEDKGR 508
Query: 551 ALVMGYDD-----MGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
+ + + +GYE + +E ++ +VS G+ VL + A +
Sbjct: 509 IVTIFLLNFFRKYVGYEFT-----ANLEDELDKVSAGDLDYKQVLNRFWRDFSAAI--SE 561
Query: 606 LKKVKLLEAMGIFFER-----WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
++++ E + + E + ED G R C +C E ++ LK SR G VGC
Sbjct: 562 TSELRITEVLDVLDEALAPQLYPPRED----GSDPRSCPLCGEGSLHLKTSRTGGF-VGC 616
Query: 661 LAFPQCR 667
+P+CR
Sbjct: 617 SRYPECR 623
>gi|138895193|ref|YP_001125646.1| DNA topoisomerase III [Geobacillus thermodenitrificans NG80-2]
gi|196248223|ref|ZP_03146924.1| DNA topoisomerase III [Geobacillus sp. G11MC16]
gi|134266706|gb|ABO66901.1| DNA topoisomerase III [Geobacillus thermodenitrificans NG80-2]
gi|196211948|gb|EDY06706.1| DNA topoisomerase III [Geobacillus sp. G11MC16]
Length = 696
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 162/611 (26%), Positives = 263/611 (43%), Gaps = 73/611 (11%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L G + +K Y + G ++T GH
Sbjct: 1 MKSLVLAEKPSVARDIARVL----------GCKKTHKSY-----LEGP--RYIVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
L+EL D+D +Y W D P + +R+ + + + + + C +
Sbjct: 44 LVELKMPEDYDRKYETWRLEDLPIIPKKMGLKVIRQTSHQFRAIERLAKRRDVKDC---I 100
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FAD 177
+ D REGE +A +++ ++ + R S+ D+ I + L Q+ +
Sbjct: 101 IATDAGREGELVARWILQ---KIDWKKPIWRLWISSQTDQAIRDGFRQLKPGTQFDRLYE 157
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
+ R E D IG + TR ++T N LS G Q PTL ++ER EI
Sbjct: 158 SAICRAEADWLIGLNVTR------------ALTTKYNDPLSAGRVQTPTLAMIIEREREI 205
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMR---GHLFDYTSAVIIYEMCVQEPTATVTKVRQ 294
Q+ +WTI+ G+ T W R LFD A + +P A VT V++
Sbjct: 206 QSFVPVPYWTIHARI----GSVTAVWERHGGKRLFDKDEANELMTRLKGQP-ARVTSVKR 260
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTN 353
+ K + P P EL++ A++ F S++ T+ V + LY Q ++YPRT++ S
Sbjct: 261 KRKSEPVPLPYDLTELQREANKRFGFSAKKTLSVLQRLYEQHKLVTYPRTDSRYLPSDMK 320
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGG---HDDKA--HPPIHPTKFSSGES 408
+ P + LL +N + DDK H I PT +
Sbjct: 321 ATMTDRLLAMKPGYEDVISSLLTK-----KNVKAANRVFQDDKVTDHHAIIPTDERLDLA 375
Query: 409 RWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFE 468
+ S D KLY+++ R FLA P V I E F ++ + V E
Sbjct: 376 KLSVDERKLYDMIARRFLALFYPPYEYETATVVFEIGDETFVARETAVVNAGFKAVLGKE 435
Query: 469 SWGGLVIPTYVH---GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
PT +H GQ L ++ T PP SEADLL+ M++ G+GT AT D
Sbjct: 436 ETEA--KPTLLHLSEGQTLASVQLEMEQSFTEPPSRYSEADLLAQMERYGLGTPATRADI 493
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
I++L++ ++ + RF PT G+ L+ + + EL P L + E +++ ++ G +
Sbjct: 494 IERLVE-TEVVERKDGRFYPTKKGKQLI---ELVNEELKSPELTARWERELEAIARGKGN 549
Query: 586 KADVLANCLQQ 596
LAN +Q
Sbjct: 550 PKQFLANIRRQ 560
>gi|402580660|gb|EJW74609.1| DNA topoisomerase [Wuchereria bancrofti]
Length = 268
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 141/273 (51%), Gaps = 15/273 (5%)
Query: 165 VQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFH--IDSVTDDRNLVLSYGPC 222
++NL PN + +VDARQE+DLRIG +FTRFQT + + +DS T +S+GPC
Sbjct: 1 MRNLGRPNINESLSVDARQELDLRIGCAFTRFQTRYFQGKYGDLDSTT------ISFGPC 54
Query: 223 QFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG-TATFSWMRGHLFDYTSAVIIYEMC 281
Q PTLGF V R+ I + E +W + ++ G T + +RG +FD + +
Sbjct: 55 QTPTLGFCVTRHDLITQFKPEPYWILQAIFETSSGDTLKPTHVRGRIFDKDVCQLFLDRI 114
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
++ V V E K P L+T+EL K AS +S TM AE LY GFISYP
Sbjct: 115 KKQNQGVVVDVVSSELRKERPQALNTVELLKVASSGLGLSPTQTMSTAEYLYTRGFISYP 174
Query: 342 RTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT 401
RTET ++ S + ++ Q W ++LL RN G D HPPI P
Sbjct: 175 RTETTAYPSNFDFSEALRHQQNDSRWKDIVKKLLSEGITKPRN----GEDKGDHPPISPL 230
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAV 434
+ + G + D K+Y+ V +HF+A + QP +
Sbjct: 231 RGNDGS--LTGDALKIYDYVTQHFIATLMQPCI 261
>gi|339502814|ref|YP_004690234.1| DNA topoisomerase 1 [Roseobacter litoralis Och 149]
gi|338756807|gb|AEI93271.1| DNA topoisomerase 1 [Roseobacter litoralis Och 149]
Length = 878
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 156/617 (25%), Positives = 262/617 (42%), Gaps = 63/617 (10%)
Query: 94 RKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRR 150
RKHV K I L+E+ L+L D DREGE I++ + E +++ + R
Sbjct: 59 RKHV----KAIADALKED----NALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSR 110
Query: 151 ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT 210
F+A+ + +A+QN + +A AR+ +D +G + + L
Sbjct: 111 VVFNAITKAAVTEAMQNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAK----- 165
Query: 211 DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRGH 267
S G Q TL +VER EI+A + E+W++ + +S+E A + + G
Sbjct: 166 -------SAGRVQSVTLRLIVEREMEIEAFRAREYWSVKALLATPRSQEFEARLTVLAGK 218
Query: 268 LFDY--TSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSS 322
D E+ VQ T+ +V V + + P P T L++ ASR F M +
Sbjct: 219 KLDRFDIENQTQAELAVQAITSRDLSVKSVEAKPANRNPSAPFMTSTLQQEASRKFGMGA 278
Query: 323 EHTMKVAEDLYQAGFISYPRTE-TDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
TM A+ LY+AG+I+Y RT+ D + + + D+ P + R +
Sbjct: 279 RQTMSTAQRLYEAGYITYMRTDGIDMAPEAVSAARDAIKTLYGADYVPKSPR-------I 331
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ---DHYKLYELVVRHFLACVSQPAVGAET 438
++N + AH + PT + D KLY+L+ + LAC + A T
Sbjct: 332 YKNKAKNAQE--AHECVRPTDMMTKAEDLKTSDADQRKLYDLIWKRTLACQMEAARLERT 389
Query: 439 IVEI-NIAGEV-FSTSGRVILAKNYLDVYR-------FESWGGLVIPTYVHGQQFIPTTL 489
EI + G++ +G+V+L +L VY +P G + T+
Sbjct: 390 TAEIASEDGQIGLRATGQVMLFDGFLRVYEEGRDDVAVVDDDDKRLPQIGQGDRLDKRTV 449
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
T + T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G
Sbjct: 450 TPEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASVVTTIQDREYVRKDKN-RLIPEDKG 508
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKK 608
+ + + + + +E + VS GN +VL + A + A L+
Sbjct: 509 RLVTAFLSNYFRKYVGYDFTADLEDQLDTVSAGNADYKEVLGRFWRDFSAAIAETADLRI 568
Query: 609 VKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
++LE + E + ED G R C C + ++ +R G +GC +P+C
Sbjct: 569 TEVLEKINEVLEPHLFPANED----GTDPRLCPNCGAGRLSMRTARSGGAFIGCSNYPEC 624
Query: 667 R--NAVWLPGSVSEAAV 681
R A PG ++ +
Sbjct: 625 RYTRAFGPPGEEDDSGI 641
>gi|163745854|ref|ZP_02153213.1| DNA topoisomerase I [Oceanibulbus indolifex HEL-45]
gi|161380599|gb|EDQ05009.1| DNA topoisomerase I [Oceanibulbus indolifex HEL-45]
Length = 885
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 150/599 (25%), Positives = 258/599 (43%), Gaps = 56/599 (9%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRRAR 152
V D K K + + + L+L D DREGE I++ + E +++ + R
Sbjct: 53 EVASDSKKHVKAIADALAKDNALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVV 112
Query: 153 FSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDD 212
F+ + + + +A++N + +A AR+ +D +G + + L
Sbjct: 113 FNQITKKAVTEAMENPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAK------- 165
Query: 213 RNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT------ATFSWMRG 266
S G Q TL +VER EI+A + E+W++ + G + + +
Sbjct: 166 -----SAGRVQSVTLRLIVEREMEIEAFRAREYWSVKALLATPRGQEFETRLVSLAGKKL 220
Query: 267 HLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL---KYPPYPLSTIELEKRASRYFRMSSE 323
FD A EM VQ T+ KV E + P P T L++ ASR F M +
Sbjct: 221 DRFDLADATQA-EMAVQAITSRALKVMNVEAKPASRNPSAPFMTSTLQQEASRKFSMGAR 279
Query: 324 HTMKVAEDLYQAGFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
TM A+ LY+AG I+Y RT+ + + T + ++ G D+ P R +
Sbjct: 280 QTMSTAQRLYEAGHITYMRTDGIDMAPEAVTMARDAIADRFGA-DYVPKEPR-------I 331
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGES--RWSQDHYKLYELVVRHFLACVSQPAVGAETI 439
++N + AH I PT + + D KLY+L+ + LAC + A T
Sbjct: 332 YKNKAKNAQE--AHECIRPTDMTKDAKALKLDADQAKLYDLIWKRTLACQMESARLERTT 389
Query: 440 VEINIA-GEV-FSTSGRVILAKNYLDVYRFESWGGLV------IPTYVHGQQFIPTTLTL 491
VE+ G+V +G+V+L +L VY E +V +P +G ++T
Sbjct: 390 VEVGSEDGQVGLRANGQVVLFDGFLRVYE-EGRDDVVDEDDKRLPQINNGDAMDKRSVTP 448
Query: 492 DSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEA 551
+ T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G
Sbjct: 449 EQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKDGN-RLIPEDKGRL 507
Query: 552 LVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKVK 610
+ ++ + + +E + +VS G+ + +VL + A + + L+ +
Sbjct: 508 VTAFLENYFRRYVGYDFTADLEDQLDKVSAGDAAYKEVLRRFWRDFSAAIAETSELRITE 567
Query: 611 LLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
+LE + E + ED G R C C+ + ++ +R G +GC +P+CR
Sbjct: 568 VLEKINEVLEPHLFPPTED----GSDPRLCPNCEIGRLSMRTARSGGAFIGCSNYPECR 622
>gi|254486464|ref|ZP_05099669.1| DNA topoisomerase I [Roseobacter sp. GAI101]
gi|214043333|gb|EEB83971.1| DNA topoisomerase I [Roseobacter sp. GAI101]
Length = 881
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 148/577 (25%), Positives = 250/577 (43%), Gaps = 55/577 (9%)
Query: 118 LVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW 174
L+L D DREGE I++ + E +++ + R F+A+ + +A++N +
Sbjct: 75 LILATDPDREGEAISWHLQEALTQRKSIKKDTPVSRVVFNAITKAAVTEAMKNPRQVDMP 134
Query: 175 FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
+A AR+ +D +G + + L S G Q TL +VER
Sbjct: 135 LVEAYLARRALDYLVGFNLSPVLWRKLPGAK------------SAGRVQSVTLRLIVERE 182
Query: 235 WEIQAHESEEFWTINC---SHKSEEGTATFSWMRGHLFDYTSAV--IIYEMCVQEPTA-- 287
EI+A + E+WT+ + + +E A + G D EM VQ +
Sbjct: 183 MEIEAFRNREYWTVKALVATPRGQEFEARLVTLAGKKLDRFDLANDTQSEMAVQAINSRD 242
Query: 288 -TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTE-T 345
TVT V + + P P T L++ ASR F M + TM A+ LY+AG I+Y RT+
Sbjct: 243 LTVTSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYEAGHITYMRTDGI 302
Query: 346 DSFSSGTNL-HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFS 404
D N+ ++++ G ++ P + R +++N + AH I PT S
Sbjct: 303 DMAPEAMNMARDAIKDRFGA-EYVPSSPR-------IYKNKAKNAQE--AHECIRPTDMS 352
Query: 405 SGESRWS---QDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV--FSTSGRVILAK 459
+ D KLY+L+ + LAC + A T VEI E +G+V+
Sbjct: 353 KDAAALKLTEPDQRKLYDLIWKRTLACQMESARLERTTVEIGSKDEQVGLRATGQVVQFD 412
Query: 460 NYLDVYRFESWGGLV------IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK 513
+L VY E +V +P G + +T + T+PPP +EA L+ M++
Sbjct: 413 GFLRVYE-EGRDDVVDEDDKRLPQISQGDKMDKRAITPEQHFTQPPPRYTEATLVKRMEE 471
Query: 514 AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMME 573
GIG +T + + DR Y K+ N R P + G + ++ + + + +E
Sbjct: 472 LGIGRPSTYASVVTTIQDREYVRKEGN-RLFPEDKGRLVTAFLENYFRKYVGYDFTADLE 530
Query: 574 SDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKVKLLEAMGIFFER--WSGGEDQQA 630
+ +VS + DVL + A + A L+ ++LE + E + ED
Sbjct: 531 DQLDKVSAADADYKDVLTRFWKDFSAAIAETADLRITEVLEKINEVLEPHLFPPTED--- 587
Query: 631 AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
G+ R C C+ + ++ +R G +GC +P+CR
Sbjct: 588 -GKDPRLCPNCEIGRLSMRTARSGGAFIGCSNYPECR 623
>gi|124027789|ref|YP_001013109.1| DNA topoisomerase I [Hyperthermus butylicus DSM 5456]
gi|123978483|gb|ABM80764.1| DNA topoisomerase I [Hyperthermus butylicus DSM 5456]
Length = 682
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 170/642 (26%), Positives = 278/642 (43%), Gaps = 55/642 (8%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKP A+ +A LS ++ + + G Y + + ++ GHL
Sbjct: 15 LVIAEKPKAARKIAEALS-DKPIACKLGGIPY-------WIVTWMGTRYVIVPAAGHLFG 66
Query: 71 LDFDERYRKWHSCDPADLYHAPV------RKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
L D+ H + Y AP+ H + IKK AR V D
Sbjct: 67 LTTDK-----HGFPVFEYYWAPLWAVDSSSAHTRRFLEAIKKL----ARHAVRFVNACDY 117
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
D EG I + ++ RA+ RA+FSAL +++ +A L + +A AR E
Sbjct: 118 DIEGSVIGYNIL---RALGVEKRALRAKFSALTRQDVRRAFSRLERLDWDMINAGLARHE 174
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + +R L+++ SVT R+ VLS G Q PTL V R +
Sbjct: 175 LDWLWGINISR---ALMESLR--SVTG-RSKVLSAGRVQSPTLVEAVSRTIKRNLFVPLP 228
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
++T+ + E G + A + V + + + PPYP
Sbjct: 229 YFTVTAT--VELGGKARRLQVASFELRSEAQRVARQLRATGYLVVREYSEYVERIPPPYP 286
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
+ +L+ ASR S +T K+AE+LY G ISYPRT + ++ IVQ +
Sbjct: 287 FNLGDLQVEASRILGFSPYYTQKLAEELYLEGLISYPRTNSQKIPPTIDISAIVQALVRQ 346
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE---SRWSQDHYKLYELV 421
+ + LL G+ R +G +D AHP IHPT GE S S++H +LY+L+
Sbjct: 347 TRYRELVEYLLRATRGVLRV-NNGPKEDPAHPAIHPT----GEPPHSGLSKNHLRLYDLI 401
Query: 422 VRHFLACVSQPA--VGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
VR FLA ++ PA V A I+ G S +G I++ ++ +Y + IP
Sbjct: 402 VRRFLASMAPPAVLVRARLILSAEGLGSA-SITGVRIVSPGWMQIYYWAKPSEEYIPRLY 460
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
GQ+ ++++ + T+PP L ++ L+ M+ GIGT+AT ++ L +R Y ++
Sbjct: 461 RGQRIQVKSVSVQTSYTQPPELHTKTSLVKWMESKGIGTEATRARIVELLFERGY-LRSE 519
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
R T +G + ++ L E ++ + +G SK V++ + +
Sbjct: 520 GGRVQATELGLTVANILQTYFPDITSVELTRRFEELLEAIRMGKVSKDAVISEARRFLAG 579
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ KVK + A+G+ +S G + RQC IC
Sbjct: 580 ILSEF---KVKSMHAVGMELA-YSLGLLKPP-----RQCPIC 612
>gi|110679406|ref|YP_682413.1| DNA topoisomerase I [Roseobacter denitrificans OCh 114]
gi|109455522|gb|ABG31727.1| DNA topoisomerase I, putative [Roseobacter denitrificans OCh 114]
Length = 878
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 155/616 (25%), Positives = 258/616 (41%), Gaps = 61/616 (9%)
Query: 94 RKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRR 150
RKHV K I L+E+ L+L D DREGE I++ + E +++ + R
Sbjct: 59 RKHV----KAIADALKED----NALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSR 110
Query: 151 ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT 210
F+A+ + +A+QN + +A AR+ +D +G + + L
Sbjct: 111 VVFNAITKAAVTEAMQNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAK----- 165
Query: 211 DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRGH 267
S G Q TL +VER EI+A + E+W++ + + +E A + + G
Sbjct: 166 -------SAGRVQSVTLRLIVEREMEIEAFRAREYWSVKALLATPRGQEFEAKLTVLAGK 218
Query: 268 LFDY--TSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSS 322
D E+ VQ T+ +V V + + P P T L++ ASR F M +
Sbjct: 219 KLDRFDIENQTQAELAVQAITSRDLSVKSVEAKPANRNPSAPFMTSTLQQEASRKFGMGA 278
Query: 323 EHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW 382
TM A+ LY+AG+I+Y R TD ++ I Y + + ++
Sbjct: 279 RQTMSTAQRLYEAGYITYMR--TDGIDMAPEAVTAARDAIKT----LYGSKYVPEKPRIY 332
Query: 383 RNPGSGGHDDKAHPPIHPTKFSSGESRWSQ---DHYKLYELVVRHFLACVSQPAVGAETI 439
+N + AH + PT + D KLY+L+ + LAC + A T
Sbjct: 333 KNKAKNAQE--AHECVRPTDMMTKAEDLKTTDADQRKLYDLIWKRTLACQMEAARMERTT 390
Query: 440 VEI-NIAGEV-FSTSGRVILAKNYLDVYR-------FESWGGLVIPTYVHGQQFIPTTLT 490
EI + G+V +G+V+L +L VY +P G + T+T
Sbjct: 391 AEIASEDGQVGLRATGQVMLFDGFLRVYEEGRDDVAVVDDDDKRLPQIDQGDRLDKRTVT 450
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
+ T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G
Sbjct: 451 PEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASVVTTIQDREYVRKDKN-RLIPEDKGR 509
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKV 609
+ + + + + +E + VS GN +VL + A + A L+
Sbjct: 510 LVTAFLSNYFRKYIGYDFTADLEDQLDTVSAGNADYKEVLGRFWRDFSAAIAETADLRIT 569
Query: 610 KLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
++LE + E + ED G R C C + ++ +R G +GC +P+CR
Sbjct: 570 EVLEKINEVLEPHLFPPNED----GSDPRLCPNCGAGRLSMRTARSGGAFIGCSNYPECR 625
Query: 668 --NAVWLPGSVSEAAV 681
A PG ++ +
Sbjct: 626 YTRAFGPPGEEDDSGI 641
>gi|334136702|ref|ZP_08510160.1| DNA topoisomerase I [Paenibacillus sp. HGF7]
gi|333605776|gb|EGL17132.1| DNA topoisomerase I [Paenibacillus sp. HGF7]
Length = 698
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 145/620 (23%), Positives = 266/620 (42%), Gaps = 75/620 (12%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEV---IEVCRAVNCHLVLRRARFSALI 157
K + K L++ +++ + + L D DREGE IA+ + +E+ NC +V F+ +
Sbjct: 60 KGSVLKELKDASKKVKKVYLAADPDREGEAIAWHLAHYLELNDTDNCRVV-----FNEIT 114
Query: 158 DREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
+ + A + N +A AR+ +D +G + +L K L
Sbjct: 115 KQAVKDAFKTPRPINIDLVNAQQARRILDRLVG---YKISPLLWKKVKKG---------L 162
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG--TATFSWMRGHLFDYTSAV 275
S G Q + +++R EI+A EE+WTI ++ + A F M G + S
Sbjct: 163 SAGRVQSVAVKLIMDRENEIKAFVPEEYWTITAMLEAGKAHFEAKFYGMDGAKKELGSEE 222
Query: 276 IIYEM--CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
+ + ++ V +V+++E+L+ P P T L++ A+R + TM VA+ LY
Sbjct: 223 EVQAVLKAIEGAPFIVKEVKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLY 282
Query: 334 QA---------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
+ G I+Y RT++ T + + QE+ G Y + ++
Sbjct: 283 EGIDLGKEGTVGLITYMRTDS------TRISPVAQEEAKEYILGKYGESFYPETPRVYTK 336
Query: 385 PGSGGHDDKAHPPIHPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
GS D AH I P+ + S + S+D ++LY+LV F+A AV +
Sbjct: 337 KGSNTQD--AHEGIRPSSVTRDPDSVKEFLSRDQFRLYKLVWERFVASQMSSAVLDTMTI 394
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-----VIPTYVHGQQFIPTTLTLDSGV 495
++N+ VF G + ++ VY + G ++P G Q + +
Sbjct: 395 DLNVGNTVFRAVGSKLKFPGFMKVYVEGNDDGTTEEDKLLPPLKSGDQVVSDEIQPKQHF 454
Query: 496 TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMG 555
T+PPP +EA L+ +++ GIG +T ++ + R Y + +F PT +GE ++
Sbjct: 455 TQPPPRYTEARLVRALEELGIGRPSTYAPTLETIQKRGY-VAIEEKKFVPTELGELVIQL 513
Query: 556 YDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ--QMKACFLDARLKKVK--- 610
+ E+ + ME ++ V G ++ VL + + F + +K+++
Sbjct: 514 MSEFFPEILDVEFTAQMEEELDHVGEGKENWVKVLDEFYSSFEKRLEFAEEEMKEIEIQD 573
Query: 611 -------------LLEAMGIF--FERWSGGEDQQAAGEVVRQCGI----CQESNMVLKKS 651
L+ MG F F SG D + +V+ G+ C+E +V ++S
Sbjct: 574 EVSDEICEKCGKHLVYKMGRFGKFLACSGFPDCRNTKPIVKDIGVTCPKCKEGKVVERRS 633
Query: 652 RDGNLMVGCLAFPQCRNAVW 671
+ G + GC +P+C W
Sbjct: 634 KKGRIFYGCDHYPECDFVSW 653
>gi|84516626|ref|ZP_01003985.1| DNA topoisomerase I [Loktanella vestfoldensis SKA53]
gi|84509662|gb|EAQ06120.1| DNA topoisomerase I [Loktanella vestfoldensis SKA53]
Length = 870
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 155/607 (25%), Positives = 264/607 (43%), Gaps = 71/607 (11%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRRAR 152
+ D K K + + + L+L D DREGE I++ + E +A+ + R
Sbjct: 53 EIATDSKKHIKAIVDALKTDNELILATDPDREGEAISWHLTEALTEKKAIRKDTPVSRVV 112
Query: 153 FSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDD 212
F+A+ I +A++N + +A AR+ +D +G + + L
Sbjct: 113 FNAITKTAILEAMKNPRQVDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGAK------- 165
Query: 213 RNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT---ATFSWMRGHL- 268
S G Q L +VER EI+A ++E+WT+ +S G A + + G
Sbjct: 166 -----SAGRVQSVCLRLIVEREMEIEAFRNQEYWTVKAQLQSPRGQMFEARLTALAGKKL 220
Query: 269 --FDYTSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSE 323
FD +A E+ VQ T+ +T V + ++ P P T L++ ASR + M ++
Sbjct: 221 DKFDLGNATQA-ELAVQAVTSRDLKITSVEAKPAIRNPSPPFMTSTLQQEASRKYGMGAK 279
Query: 324 HTMKVAEDLYQAGFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
TM VA+ LY++G I+Y RT+ + + T ++ + G AQ L D +
Sbjct: 280 QTMSVAQRLYESGLITYMRTDGIDMAPEAVTGARDAIKAKFG-------AQYLPDQPR-I 331
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGESRW---SQDHYKLYELVVRHFLACVSQPAVGAET 438
++N + AH I PT G + D KLY+L+ + LA A T
Sbjct: 332 YKNKAKNAQE--AHECIRPTDMMVGADQADIKDVDQRKLYDLIYKRTLASQMAAAQLERT 389
Query: 439 IVEINIA-GEV-FSTSGRVILAKNYLDVYR-----FESWGGLVIPTYVHGQQFIPTTLTL 491
+V++ A G+V +G+V++ ++ +Y +P G++ + ++
Sbjct: 390 VVDVASADGQVILRANGQVMVFDGFIAIYEEGRDDTADDDDKRLPQLAQGEKVVKQSVDP 449
Query: 492 DSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE- 550
+ T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G
Sbjct: 450 EQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVEKDKN-RLIPQDKGRL 508
Query: 551 --ALVMGY--DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF---LD 603
A +M Y +GY + + +E+ + EVS GN VL + A D
Sbjct: 509 VTAFLMNYFQKYIGY-----DFTADLENQLDEVSAGNADYKKVLDRFWRDFSAAIGETAD 563
Query: 604 ARLKKV--KLLEAMGI-FFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
R+ +V K+ E + F + G D R C C + ++ +R G +GC
Sbjct: 564 LRIGEVLDKINEVLEPHLFPPTADGTDP-------RLCPNCGAGRLSMRTARSGGAFIGC 616
Query: 661 LAFPQCR 667
+P+CR
Sbjct: 617 SNYPECR 623
>gi|296241915|ref|YP_003649402.1| DNA topoisomerase I [Thermosphaera aggregans DSM 11486]
gi|296094499|gb|ADG90450.1| DNA topoisomerase I [Thermosphaera aggregans DSM 11486]
Length = 686
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 156/624 (25%), Positives = 266/624 (42%), Gaps = 46/624 (7%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL +AEKP A+ +A LS+ +R N + F IR P +++ S GHL
Sbjct: 23 KVLVIAEKPKAARKIAEALSQRYFVR------NINDVTYFE--IRDGPRQIIVASSVGHL 74
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRC----QWLVLWLDC 124
L E ++ LY V E KK E R+ + V D
Sbjct: 75 YGLTTQEEGYPVYTYQWVPLY-------VVEKKKAHSYNYLEALRKLCTTSNYFVNACDY 127
Query: 125 DREGENIAFEVIEV----CRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
D EG I + +I+ RA RA+FS+L E+ +A + L + +A
Sbjct: 128 DIEGSVIGYLIIKFNGDPGRAY-------RAKFSSLTLSELREAFRRLTQLDYEMIEAGL 180
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
R E+D G + +R +++F + ++LS G Q PTL +V + E
Sbjct: 181 CRHELDWLWGINVSRAIMRTVESF------SKKKIILSAGRVQTPTLKYVSDIEKERNLF 234
Query: 241 ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY 300
+++ + + T + + A + E +E TV +
Sbjct: 235 IPIPVYSVVPTIVKDGVKITLELINSPIRTKKDAYALAERIRREGFLTVESYVEHTTSVA 294
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE 360
PP P + +L++ A+R + S T +AE LY ISYPRT + SG + ++ +
Sbjct: 295 PPPPFNLGDLQEEAARIYGYSPSKTQSIAEQLYLDALISYPRTNSQKLPSGLDFKSLLTK 354
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL 420
++ LL G + P G +D AHP I+PT + S + + +Y+L
Sbjct: 355 ISQISNYSALVSDLLKETKG-YLKPVEGDKEDPAHPAIYPTGVRP--VKLSSEQWAVYDL 411
Query: 421 VVRHFLACVSQPAVGAETIVEINIAGE--VFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
+VR FLA + A+ + + + GE VF +G+ I + Y F V+P +
Sbjct: 412 IVRRFLAAFAGNAIIYRSTAKFALPGENIVFQATGQGIEDLGWYKYYPFHKPSVKVLPRF 471
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
+G++ +++ + TRPP +S+ +L M+ IGT+AT I+KL +R Y + +
Sbjct: 472 RNGERVEVVEVSVKTAYTRPPQRISKIGMLRWMESVEIGTEATRATIIEKLFERKYLV-N 530
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA---NCLQ 595
+ A T++G +V + EL K L E M ++ G + V+ N L
Sbjct: 531 TSRGVAVTDLGLGIVETLEIFFPELVKVELTRHFEKLMNDIKKGVVKREQVITEARNTLD 590
Query: 596 QMKACFLDARLKKVKLLEA-MGIF 618
+ F + + ++L + +GI+
Sbjct: 591 MLIKKFNEKKETVGQILSSRLGIY 614
>gi|255261743|ref|ZP_05341085.1| DNA topoisomerase I [Thalassiobium sp. R2A62]
gi|255104078|gb|EET46752.1| DNA topoisomerase I [Thalassiobium sp. R2A62]
Length = 881
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 153/616 (24%), Positives = 259/616 (42%), Gaps = 58/616 (9%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAF---EVIEVCRAVNCHLVLRRAR 152
+ D K K + + + L+L D DREGE I++ E + + +++ + R
Sbjct: 53 EIASDSKKHVKAIADALKEDNELILATDPDREGEAISWHLQEALTLRKSIKKDTPVSRVV 112
Query: 153 FSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDD 212
F+A+ + +A++N +Q DA AR+ +D +G + + L
Sbjct: 113 FNAITKSAVTEAMKNPRAVDQPLVDAYLARRALDYLVGFNLSPVLWRKLPGAK------- 165
Query: 213 RNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT---ATFSWMRGHLF 269
S G Q TL +VER EI+A + E+W++ + S G A + + G
Sbjct: 166 -----SAGRVQSVTLRILVEREMEIEAFRNVEYWSVKAALGSARGQDFEARLTVLGGKKL 220
Query: 270 DY-----TSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEH 324
D +A + + TVT V + + P P T L++ ASR F M +
Sbjct: 221 DKFDLQNETAAELAVQAIHSRDMTVTSVEAKPATRNPSAPFMTSTLQQEASRKFGMGARQ 280
Query: 325 TMKVAEDLYQAGFISYPRTETDSFSSGTNLHG---IVQEQIGHPDWGPYAQRLLDHAAGL 381
TM A+ LY+AG I+Y RT+ + +H + + G D+ P + R L
Sbjct: 281 TMSTAQRLYEAGHITYMRTDGIDMAP-EAVHAARDAITNKFGK-DYVPDSPR-------L 331
Query: 382 WRNPGSGGHDDKAHPPIHPT---KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAET 438
++N + AH I PT K + D KLY+L+ + ++ A T
Sbjct: 332 YKNKAKNAQE--AHECIRPTDLAKDTESAKISDADQRKLYDLIYKRTISSQMAAARLERT 389
Query: 439 IVEINIA-GE-VFSTSGRVILAKNYLDVYR------FESWGGLVIPTYVHGQQFIPTTLT 490
EI A G+ V +G+V+L +L VY +P G+ ++
Sbjct: 390 TAEIGSADGQVVLRATGQVMLFDGFLRVYEEGRDDAVVDDDDKRLPQLSQGESVDKKSIM 449
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
+ T+PPP +EA L+ M++ GIG +T + + DR Y K+ N R P + G
Sbjct: 450 PEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKEKN-RLIPEDKGR 508
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKV 609
+ ++ + + +E + +VS G DVL + A + + L+
Sbjct: 509 LVTAFLENYFRKYIGYGFTADLEGQLDDVSAGEADYKDVLGRFWRDFSAAIGETSELRIT 568
Query: 610 KLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
++LE + E + ED G R C C E + ++ +R G +GC +P CR
Sbjct: 569 EVLEKINEVLEPHLFPPTED----GSDPRLCPNCNEGRLSMRTARSGGAFIGCSRYPDCR 624
Query: 668 --NAVWLPGSVSEAAV 681
A PG+ E+A+
Sbjct: 625 YTRAFGPPGTEPESAI 640
>gi|374996454|ref|YP_004971953.1| DNA topoisomerase III [Desulfosporosinus orientis DSM 765]
gi|357214820|gb|AET69438.1| DNA topoisomerase III [Desulfosporosinus orientis DSM 765]
Length = 728
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 162/626 (25%), Positives = 267/626 (42%), Gaps = 103/626 (16%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSV 64
L + EKPSV + VA IL NQ +G+ C + ++
Sbjct: 3 KTLVLTEKPSVGREVARILHCNQ---------------------KGKGCFIGPNYVVVWA 41
Query: 65 TGHLMELD----FDERYRKWHSCDPA---DLYHAPVRKHVPEDKKDIKKTLEEEARRCQW 117
GHL+ L +DE+Y+ W D D V K + +K + ++
Sbjct: 42 LGHLVTLADPELYDEKYKDWKMEDLPMLPDKMELVVMKETAKQFGVVKNLMR--SQEFSD 99
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA- 176
L++ D REGE +A +I + L+R S+L +R I + Q+L ++ A
Sbjct: 100 LIIATDAGREGELVARWII---KKAGWKKPLKRLWISSLTERAIKEGFQHLKPGKEYEAL 156
Query: 177 -DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A + R E D +G + TR ++T N LS G Q PTL +VER
Sbjct: 157 YAAAECRAEADWLVGLNVTR------------ALTCKYNAQLSAGRVQTPTLAMIVEREQ 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQ 295
EI+ +++WTIN + S + +F A + + V +V++
Sbjct: 205 EIKNFVPKDYWTINLRARGFNLRWQDSNGQTRIFAKEKAEALAAKLKGH-SGEVVEVKRD 263
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTNL 354
K + PP EL++ A+R + S++ T V + LY+ ++YPRT++ S ++
Sbjct: 264 AKKELPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYENHKLVTYPRTDSRYISE--DM 321
Query: 355 HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP---------GSGGHDDKAHPPIHPTKFSS 405
+ E++ GPY ++ A G+ RN GS D H I PT+
Sbjct: 322 VSTLPERLKSIALGPY----VNLARGILRNKPIVTKRFVDGSKVSD---HHAIIPTEQPP 374
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
SR + + K+Y+L+V+ FLA +S P +T+V++ + EVF+ G+++ + VY
Sbjct: 375 ALSRLNSEELKIYDLIVKRFLAVLSAPFEYEQTLVKVAVQKEVFTAKGKIVKKLGWRSVY 434
Query: 466 RFE-SW----------GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+ +W +P G+ ++ L SG T+PP +EA LLS M+
Sbjct: 435 EGQGTWDDDSDDGEKEAEQTLPEISRGEILSNLSVDLASGKTKPPSRHTEATLLSAMEHP 494
Query: 515 -----------------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
G+GT AT + I+KL + FY + PT+ G L+
Sbjct: 495 GKLIGDQKLREAMEQSHGLGTPATRAEIIEKLYNSFYMSRQGK-EIVPTSKGIQLI---G 550
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGN 583
+ EL P L + E + E+S G
Sbjct: 551 LVPAELKSPVLTAKWEQQLTEISKGK 576
>gi|381402277|ref|ZP_09927150.1| DNA topoisomerase I [Kingella kingae PYKK081]
gi|380832736|gb|EIC12631.1| DNA topoisomerase I [Kingella kingae PYKK081]
Length = 772
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/590 (24%), Positives = 255/590 (43%), Gaps = 80/590 (13%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAV----NCHLVLRRARFSALIDREIHQAVQN 167
A+ +++ L D DREGE I++ + E+ ++ ++R F + + + A+QN
Sbjct: 71 AKEAEYIYLATDPDREGEAISWHIAEILKSKRGMKGVMDKIQRVVFHEVTPKGVQAAIQN 130
Query: 168 LVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTL 227
+ DA R+ +D +G + + +L K LS G Q P L
Sbjct: 131 PRSLDMNLVDAQQTRRALDYLVGFNLS---PLLWKKIRYG---------LSAGRVQSPAL 178
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEGTATFS-----WMRGHLFDYT------SAVI 276
+ ER EI+A ES+E+W+I+ S +G FS W L ++ A I
Sbjct: 179 RLICERENEIKAFESQEYWSIHLD--SHKGRTKFSAKLTHWQNNKLEQFSLPDEASQASI 236
Query: 277 IYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA- 335
+ +Q TA V V +++ + P P +T +++ A R +++ TM+ A+ L++
Sbjct: 237 L--AALQGKTAQVADVSKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGI 294
Query: 336 -------GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPG 386
G I+Y RT++ + S T + ++ +IG L +A +++
Sbjct: 295 DVGQGAVGLITYMRTDSVTLSEDALTEIRHYIENKIG--------ADFLPSSAKMYKTKS 346
Query: 387 SGGHDDKAHPPIHPTK-FSSGESR---WSQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
+ AH I PT + S ES S D +KLY+++ + +AC A T V+I
Sbjct: 347 KNAQE--AHEAIRPTSVYRSPESVKPFLSADQFKLYQMIWQRTVACQMVDAKFDATTVDI 404
Query: 443 NIAGEVFSTSGRVILAKNYLDVYRFESWGGLV------IPTYVHGQQFIPTTLTLDSGVT 496
N+ VF +G+V++ +L VY+ +P V G L + T
Sbjct: 405 NVGEGVFRATGQVLVFAGFLSVYQEGEDEEDAAEDQKKLPEMVVGDVIPVDNLYGEQHFT 464
Query: 497 RPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY 556
+PPP +EA L+ +++ GIG +T IK L DR Y I + RF PT+ GE +
Sbjct: 465 QPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVIVE-QRRFQPTDTGEIVNKFL 523
Query: 557 DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMG 616
+ + + + +E + E++ G + V+ F K+V +E G
Sbjct: 524 TEHFEQYVDYDFTAKLEDQLDEIANGKREWIPVMDK--------FWKGFHKQV--VEKEG 573
Query: 617 IFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
I +++ E+ C C + +K R G V C +P+C
Sbjct: 574 IERAKFT-------TEELDETCPQCGNHKLQIKFGRAGRF-VACAGYPEC 615
>gi|389860366|ref|YP_006362605.1| DNA topoisomeraes I [Thermogladius cellulolyticus 1633]
gi|388525269|gb|AFK50467.1| DNA topoisomeraes I [Thermogladius cellulolyticus 1633]
Length = 685
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/600 (24%), Positives = 255/600 (42%), Gaps = 35/600 (5%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFN---YSIRGQPCHMLMTSVT 65
V+ +AEKP A +A + + Y KI Y +G + + S
Sbjct: 16 RVVIIAEKPKAASKIASAVLPS-----------YRKITVQGVPLYVYKGNGLEVTVASAA 64
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRK-HVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GH+ L S + A + R H+ K + L E R + + D
Sbjct: 65 GHIFNLSTKLSGYPVFSYEWAPSFEVDRRSLHI----KKFYQALIEACRGRDYYINACDY 120
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
D EG I F +I+ L RA+FS+L E+ ++ + L + +A AR E
Sbjct: 121 DIEGSVIGFLIIKFLGDPKKAL---RAKFSSLTPAELRESFKRLTRLDYEMIEAGLARHE 177
Query: 185 IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
+D G + +R ++ + ++LS G Q PTL +V ++ E H
Sbjct: 178 LDWLWGVNISRALMSAVER------AVGKRVILSAGRVQTPTLAYVAQQLTERNLHIPYP 231
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP-Y 303
++++ + + S +G +F+ S + ++E + +EK+ PP +
Sbjct: 232 IFSLSLVVEKDSARVGASREKG-VFETQSEALRVASIIKEKKYVQVEDYVEEKVSVPPPF 290
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
P + +L+ A R + S T ++AE LY ISYPRT + N I+ +
Sbjct: 291 PFNLGDLQGEAYRIYGFSPYKTQEIAERLYLEALISYPRTNSQKLPPTLNYGMILNQLAE 350
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+P + +LL G + P G +D AHP I+PT + D K+Y+LVVR
Sbjct: 351 NPAYRYLVAQLLSETGGRLK-PREGPKEDPAHPAIYPTGVKPPHN-LPPDMLKVYDLVVR 408
Query: 424 HFLACVSQP--AVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
FLA S+P V + + GE F + G+ ++ K +L Y F + IP++ G
Sbjct: 409 RFLAVFSRPYEIVRQRVVFSAGVPGETFYSEGQYLVRKGWLLYYYFHTPRETRIPSFRKG 468
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
+ + L ++PP ++ +L M+ IGT++T I+ L R Y +K ++
Sbjct: 469 ELVRVVEVDLKKMSSKPPNRPTKMSILKWMESVEIGTESTRARIIETLFYRGY-LKMSSR 527
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
T++G ++ + EL K L E ++++ VG S++ V+ Q + +
Sbjct: 528 GVEITDLGLGVIEVIGEFFPELTKVELTREFEKSLEDIRVGKTSRSLVVEKAKQTLSSLI 587
>gi|89071022|ref|ZP_01158239.1| DNA topoisomerase I [Oceanicola granulosus HTCC2516]
gi|89043410|gb|EAR49627.1| DNA topoisomerase I [Oceanicola granulosus HTCC2516]
Length = 870
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 148/589 (25%), Positives = 254/589 (43%), Gaps = 54/589 (9%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRRARFSALIDREIH 162
+ + E + L+L D DREGE I++ + E R++ + R F+A+ + +
Sbjct: 63 RAIAEALKADNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAITKKAVT 122
Query: 163 QAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPC 222
+A+ N D + +A AR+ +D +G + + L S G
Sbjct: 123 EAMANPRDIDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGAR------------SAGRV 170
Query: 223 QFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTA------TFSWMRGHLFDYTSAVI 276
Q L VVER EI+A ++E+WT+ S G T + + FD +
Sbjct: 171 QSVCLRLVVEREMEIEAFRAQEYWTVKALLASPRGQTYEARLTTLAGKKLDKFDLKDSTA 230
Query: 277 IYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
E+ VQ T+ + V + + P P T L++ ASR F M + M A+ LY
Sbjct: 231 A-ELAVQAVTSRDLKIVSVEAKPAGRNPAPPFMTSTLQQEASRKFSMGARACMNAAQRLY 289
Query: 334 QAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDK 393
+AG I+Y RT D ++ I + + L +++N +
Sbjct: 290 EAGHITYMRT--DGIDMAPEAVSAARDAIA----AKFGKEFLPDNPRIYKNKAKNAQE-- 341
Query: 394 AHPPIHPTKFSSGESRW---SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA-GEV- 448
AH I PT + D +LY+L+ + +A A T V+I A G+V
Sbjct: 342 AHECIRPTDMMMSADKLGLTDSDQRRLYDLIYKRTIASQMAAARFERTSVDIASADGQVG 401
Query: 449 FSTSGRVILAKNYLDVY---RFESWG----GLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
+G+V+L +L VY R ++ G G +P G+ +T + T+PPP
Sbjct: 402 LRATGQVVLFDGFLAVYEEGRDDTSGDEDDGKRLPQLAEGEPAEKREVTPEQHFTQPPPR 461
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ M++ GIG +T + + DR Y K+ N R P + G + + +
Sbjct: 462 YTEATLVKKMEELGIGRPSTYASVLSTIQDREYVRKEGN-RLFPEDKGRIVTIFLLNFFR 520
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM-KACFLDARLKKVKLLEAM--GIF 618
+ + +E + +VS G + D+LA+ + +A + L+ ++L+ + +
Sbjct: 521 QYVGYEFTAKLEESLDDVSAGERDYKDLLASFWRDFHRAIEETSELRITEVLDVLDDALA 580
Query: 619 FERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
+ + ED G R+C +C+E + LK SR G VGC +P+CR
Sbjct: 581 PQLYPPRED----GTDPRECPLCKEGRLHLKTSRTGGF-VGCSRYPECR 624
>gi|20095040|ref|NP_614887.1| topoisomerase IA [Methanopyrus kandleri AV19]
gi|19888310|gb|AAM02817.1| Topoisomerase IA [Methanopyrus kandleri AV19]
Length = 587
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 167/604 (27%), Positives = 271/604 (44%), Gaps = 76/604 (12%)
Query: 1 MAGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHML 60
MA + V+ +AEKPS+A ++AG L + R G RY RG+
Sbjct: 1 MASSSKETMVI-IAEKPSLAGTIAGFLRGSWDGRKLLGFGRY----------RGR--RFA 47
Query: 61 MTSVTGHLMEL--DFDERYRKW-HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR--- 114
+TS++GH++E D +R + DP D P+ + K+ + +E +R
Sbjct: 48 ITSLSGHVLEWWPKDDPGFRHPDYFPDPGDFELRPI-----DGKERFLRAVERVVKRYAG 102
Query: 115 --CQWLVLWLDCDREGENIAFEVIEVCR---AVNCHLVLRRARFSALIDREIHQAVQNL- 168
+++ D D EGE I +EV+ + ++ RR RFSA ++ +A++
Sbjct: 103 CRADRVIVATDNDAEGELIGWEVLVWLKRQGGLDDPECARRMRFSAYTREDVLRALEGAL 162
Query: 169 ----VDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQF 224
+DP+ A + AR D G TR + DD ++S G Q
Sbjct: 163 RGERIDPS--LAYSALARTIADWLYGIPLTR---------RLSLCNDD---IVSVGRVQT 208
Query: 225 PTLGFVVERYWEIQAHESEE--FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCV 282
PTL VVER E + + + +W + E + G E+
Sbjct: 209 PTLKLVVERERERRKAQKKRRYYWILQAETPIGELRTEEKFKDGRR--------ARELAS 260
Query: 283 QEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
+ + V +VR++ + PP P + L++ A + R+S + T+ +A+ LY+ G I+YPR
Sbjct: 261 EIESIRVVEVRRERRSVRPPTPFNLTTLQRAAGKILRISPKRTLDLAQRLYEEGMITYPR 320
Query: 343 TETDSFSSGTNLHGIVQE-QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT 401
T T+ + S + ++++ + HPD QR G P SG D AHPPI PT
Sbjct: 321 TATNRYPSTFDHEELLRKLRNAHPDALRDFQR-----TGRRSEPVSGKEYDGAHPPITPT 375
Query: 402 ---KFSSGESRWSQDHYKLYELVVRHFLACVSQPA--VGAETIVEINIAGEVFSTSGRVI 456
K+ G+ W +LY+L+VR +LA +S+ A V + E G F G +
Sbjct: 376 GRRKYIRGKLAW-----RLYDLIVRRYLATLSEDALVVKWRIVAEHPGTGTRFVMEGTEV 430
Query: 457 LAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGI 516
+ VY +E +P G + +P + P S++ L++ M K G+
Sbjct: 431 ERDGWYSVYPWEKPRESTMPDVSEGDE-LPANVNASRRRKPLPRRYSQSRLVAKMKKLGL 489
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDM 576
GT++T + +KKL DR Y +K A + APT GE LV +D EL L +E +M
Sbjct: 490 GTESTRAEIVKKLFDRGY-VKRAGSGVAPTKRGERLVELLEDRVPELVSVELTRRIEREM 548
Query: 577 KEVS 580
+E+S
Sbjct: 549 EEIS 552
>gi|83954520|ref|ZP_00963231.1| DNA topoisomerase I [Sulfitobacter sp. NAS-14.1]
gi|83840804|gb|EAP79975.1| DNA topoisomerase I [Sulfitobacter sp. NAS-14.1]
Length = 888
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 156/619 (25%), Positives = 268/619 (43%), Gaps = 69/619 (11%)
Query: 82 SCDPADLYH------APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEV 135
S DP + + A +KHV K I L+++ L+L D DREGE I++ +
Sbjct: 41 SVDPENGFDMTWEVAAASKKHV----KAIADALKDD----NALILATDPDREGEAISWHL 92
Query: 136 IEVC---RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGAS 192
E +++ + R F+ + + + +A+ N + +A AR+ +D +G +
Sbjct: 93 QEALTKRKSIKKDTPVSRVVFNQITKKAVTEAMANPRQVDMPLVEAYLARRALDYLVGFN 152
Query: 193 FTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC-- 250
+ L S G Q TL +VER EI+A + E+W++
Sbjct: 153 LSPVLWRKLPGAK------------SAGRVQSVTLRLIVEREMEIEAFRNREYWSVKALV 200
Query: 251 -SHKSEEGTATFSWMRGHLFDY--TSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYP 304
+ + +E A + G D EM VQ T+ TVT V + + P P
Sbjct: 201 ATPRGQEFEARLVTLAGKKLDRFDLGNETQAEMAVQAITSRDLTVTSVEAKPASRNPSAP 260
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS--SGTNLHGIVQEQI 362
T L++ ASR F M + TM A+ LY+AG I+Y RT+ + + T + ++
Sbjct: 261 FMTSTLQQEASRKFGMGARQTMSTAQRLYEAGHITYMRTDGIDMAPEAITMARDAISDRF 320
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFS--SGESRWSQ-DHYKLYE 419
G ++ P R +++N + AH + PT + +G + ++ D KLY+
Sbjct: 321 GA-EYVPSEPR-------IYKNKAKNAQE--AHECVRPTDMTKDAGALKLTEPDQRKLYD 370
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEV--FSTSGRVILAKNYLDVYRFESWGGLV--- 474
L+ + LAC + A T VEI E +G+V+ +L VY E +V
Sbjct: 371 LIWKRTLACQMESARLERTTVEIGSKDEQVGLRATGQVVKFDGFLRVYE-EGRDDVVDED 429
Query: 475 ---IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLD 531
+P G + +T + T+PPP +EA L+ M++ GIG +T + + D
Sbjct: 430 DKRLPQITQGDKMDKRAVTPEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASVVTTIQD 489
Query: 532 RFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
R Y K+ N R P + G + ++ + + + +E+ + +VS + DVL
Sbjct: 490 REYVRKEGN-RLFPEDKGRLVTAFLENYFRKYVGYDFTADLENQLDKVSAADADYKDVLG 548
Query: 592 NCLQQMKACFLD-ARLKKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVL 648
Q A + A L+ ++LE + E + ED G R C C+ + +
Sbjct: 549 RFWQDFSAAIAETADLRITEVLEKINEVLEPHLFPPNED----GSDPRLCPNCEIGRLSM 604
Query: 649 KKSRDGNLMVGCLAFPQCR 667
+ +R G +GC +P+CR
Sbjct: 605 RTARSGGAFIGCSNYPECR 623
>gi|347534419|ref|YP_004841089.1| DNA topoisomerase 1 [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504475|gb|AEN99157.1| DNA topoisomerase 1 [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 681
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 156/623 (25%), Positives = 264/623 (42%), Gaps = 86/623 (13%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRA-VNCHLVLRRARFSALIDR 159
K D K L+ EA++ + + L D DREGE IA+ V V VN R F+ +
Sbjct: 54 KGDTIKMLKAEAKKAKEVFLASDPDREGEAIAWHVSHVLNLDVNDK---NRVTFNEITKE 110
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSY 219
+ A+++ + DA AR+ ID +G S + +K LS
Sbjct: 111 TVKDALKHPRTIDMNLVDAQQARRIIDRLVGYSISPILWKKVKKG------------LSA 158
Query: 220 GPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKS--EEGTATFSWMRGHLF---DYTSA 274
G Q L +++R EIQA EE+WTI+ K + A+F + G F +
Sbjct: 159 GRVQSVALWIIIKREREIQAFNPEEYWTIDSIFKKGRSKFKASFYGVDGKKFPLGNNDDV 218
Query: 275 VIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ 334
+ + + +T V+++EK + PP P +T L++ A++ + TM A+ LY+
Sbjct: 219 QNVLKRLDAKADFEITDVKKREKKRQPPRPFTTSTLQQDANKKLHFKTGRTMMAAQQLYE 278
Query: 335 A---------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP 385
G I+Y RT++ S+G L Q H ++GP + L+H L + P
Sbjct: 279 GINIGKEGSQGLITYMRTDSTRISAGAKLEA---AQFIHDEYGP--EYALNHPRKL-KLP 332
Query: 386 GSGGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVE 441
G D AH + PT E ++D +KLY L+ F+A PA+ ++
Sbjct: 333 -EGAQD--AHEAVRPTSVMRTPKQIEKYLTKDQFKLYNLIWSRFVASQMTPAIVDTETIK 389
Query: 442 INIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGV-----T 496
+ G + +G + + YL Y ++P G +TLD+ V T
Sbjct: 390 VVQNGVEYRANGSKLNFEGYLKAYSAGKKKDNILPDLEIGDH-----ITLDNNVPNQHFT 444
Query: 497 RPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY 556
+PP +EA L+ +++ G+G +T + + R+Y DA RF PT +GE +
Sbjct: 445 QPPARYTEASLIKALEENGVGRPSTYAPTLMTIQKRYYVKLDAR-RFVPTELGEIVNKLI 503
Query: 557 DDMGYELWKPNLRSMMESDM----------------------KEVSVGNKSKADVLANCL 594
++ E+ + + +E + KEVS K DV +
Sbjct: 504 EEYFPEIVNVDFTADIEGKLDDIEEAKLRWVKLVSEFYQPFSKEVSYAEKEMEDVQ---I 560
Query: 595 QQMKACFLDARLKKVKLLEAMGIF--FERWSGGEDQQAAGEVVRQCGI----CQESNMVL 648
++ A F + + ++E MG + F S D + +V++ G+ C E ++
Sbjct: 561 KEPLAGF-NCNICGSPMVEKMGKYGKFFACSRFPDCRNTQTIVKEIGVICPKCHEGQVIE 619
Query: 649 KKSRDGNLMVGCLAFPQCRNAVW 671
+K++ L GC +P C W
Sbjct: 620 RKTKKNRLFYGCSRYPDCDFVTW 642
>gi|126733566|ref|ZP_01749313.1| DNA topoisomerase I, putative [Roseobacter sp. CCS2]
gi|126716432|gb|EBA13296.1| DNA topoisomerase I, putative [Roseobacter sp. CCS2]
Length = 866
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 144/603 (23%), Positives = 256/603 (42%), Gaps = 62/603 (10%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRRAR 152
+ D K K + + + L+L D DREGE I++ + E +A+ + R
Sbjct: 53 EIASDSKKHIKAIVDALKNDNELILATDPDREGEAISWHLTEALTAKKAIKKDTPVSRVV 112
Query: 153 FSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDD 212
F+A+ + A+ N ++ +A AR+ +D +G + + L
Sbjct: 113 FNAITKSAVTDAMANPRQVDEPLVEAYLARRALDYLVGFNLSPVLWRKLPGAK------- 165
Query: 213 RNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTA------TFSWMRG 266
S G Q L +VER EI+A ++E+WT+ +S G T + +
Sbjct: 166 -----SAGRVQSVCLRIIVEREMEIEAFRNQEYWTVKALLQSARGQTFEARLTTLAGKKL 220
Query: 267 HLFDYTSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSE 323
FD + EM VQ ++ + V + + P P T L++ ASR F M ++
Sbjct: 221 DKFDLGNETQA-EMAVQAISSRDLVIKSVEAKPATRNPSPPFMTSTLQQEASRKFGMGAK 279
Query: 324 HTMKVAEDLYQAGFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
TM VA+ LY+AG I+Y RT+ + + T ++ + G + L +
Sbjct: 280 QTMSVAQRLYEAGLITYMRTDGIDMAPEAVTGARDAIKAKFG--------DKYLPDQPRM 331
Query: 382 WRNPGSGGHDDKAHPPIHPTKF--SSGESRWSQ-DHYKLYELVVRHFLACVSQPAVGAET 438
++N + AH I PT+ S+ +++ + D KLY+L+ + +A A T
Sbjct: 332 YKNKAKNAQE--AHECIRPTEMSVSTEDAKIADADQRKLYDLIYKRTMASQMAAAKLERT 389
Query: 439 IVEINIAGE--VFSTSGRVILAKNYLDVYR------FESWGGLVIPTYVHGQQFIPTTLT 490
+V+I A E V +G+V++ ++ +Y +P G++ ++
Sbjct: 390 VVDITSADEQVVLRANGQVMVFDGFIAIYEEGKDDSVVDDDDKRLPQLTEGEKADKKSVN 449
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
+ T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G
Sbjct: 450 PEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVEKDKN-RLIPQDKGR 508
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKV 609
+ + + + + +E+ + EVS G+ VL + A + A L+
Sbjct: 509 LVTAFLTNYFRKYIGYDFTADLENQLDEVSAGDADYKKVLGQFWRDFSAAIAETADLRIT 568
Query: 610 KLLEAMGI-----FFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
++LE + F GG D R C C + ++ +R G +GC +P
Sbjct: 569 EVLEKINEVLEPHLFPPTEGGSDP-------RLCPNCGAGRLSMRTARSGGAFIGCSNYP 621
Query: 665 QCR 667
+CR
Sbjct: 622 ECR 624
>gi|83943947|ref|ZP_00956404.1| DNA topoisomerase I [Sulfitobacter sp. EE-36]
gi|83845194|gb|EAP83074.1| DNA topoisomerase I [Sulfitobacter sp. EE-36]
Length = 888
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 157/623 (25%), Positives = 266/623 (42%), Gaps = 77/623 (12%)
Query: 82 SCDPADLYH------APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEV 135
S DP + + A +KHV K I L+++ L+L D DREGE I++ +
Sbjct: 41 SVDPENGFDMTWEVAAASKKHV----KAIADALKDD----NALILATDPDREGEAISWHL 92
Query: 136 IEVC---RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGAS 192
E +++ + R F+ + + + +A+ N + +A AR+ +D +G +
Sbjct: 93 QEALTKRKSIKKDTPVSRVVFNQITKKAVTEAMANPRQVDMPLVEAYLARRALDYLVGFN 152
Query: 193 FTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC-- 250
+ L S G Q TL +VER EI+A + E+W++
Sbjct: 153 LSPVLWRKLPGAK------------SAGRVQSVTLRLIVEREMEIEAFRNREYWSVKALV 200
Query: 251 -SHKSEEGTATFSWMRGHLFDY------TSAVIIYEMCVQEPTA---TVTKVRQQEKLKY 300
+ + +E A + G D T A EM VQ T+ TVT V + +
Sbjct: 201 ATPRGQEFEARLVTLAGKKLDRFDLGNETQA----EMAVQAITSRDLTVTSVEAKPASRN 256
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS--SGTNLHGIV 358
P P T L++ ASR F M + TM A+ LY+AG I+Y RT+ + + T +
Sbjct: 257 PSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYEAGHITYMRTDGIDMAPEAITMARDAI 316
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWS---QDHY 415
++ G ++ P R +++N + AH + PT + D
Sbjct: 317 SDRFGA-EYVPSEPR-------IYKNKAKNAQE--AHECVRPTDMTKDADALKLTEPDQR 366
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEV--FSTSGRVILAKNYLDVYRFESWGGL 473
KLY+L+ + LAC + A T VEI E +G+V+ +L VY E +
Sbjct: 367 KLYDLIWKRTLACQMESARLERTTVEIGSKDEQVGLRATGQVVKFDGFLRVYE-EGRDDV 425
Query: 474 V------IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
V +P G + ++T + T+PPP +EA L+ M++ GIG +T +
Sbjct: 426 VDEDDKRLPQITQGDKMDKRSVTPEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASVVT 485
Query: 528 KLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKA 587
+ DR Y K+ N R P + G + ++ + + + +E+ + +VS +
Sbjct: 486 TIQDREYVRKEGN-RLFPEDKGRLVTAFLENYFRKYVGYDFTADLENQLDKVSAADADYK 544
Query: 588 DVLANCLQQMKACFLD-ARLKKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQES 644
DVL Q A + A L+ ++LE + E + ED G R C C+
Sbjct: 545 DVLGRFWQDFSAAIAETADLRITEVLEKINEVLEPHLFPPNED----GSDPRLCPNCEIG 600
Query: 645 NMVLKKSRDGNLMVGCLAFPQCR 667
+ ++ +R G +GC +P+CR
Sbjct: 601 RLSMRTARSGGAFIGCSNYPECR 623
>gi|336423566|ref|ZP_08603692.1| hypothetical protein HMPREF0993_03069 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336004084|gb|EGN34156.1| hypothetical protein HMPREF0993_03069 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 736
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 152/634 (23%), Positives = 276/634 (43%), Gaps = 97/634 (15%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPSVA+ +A +L ++ + S+Y ++T GHL+
Sbjct: 4 LVLAEKPSVARDIARVLDCHKNMPGAIEGSKY-----------------IVTWALGHLVT 46
Query: 71 L----DFDERYRKWH-SCDPA--DLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
L ++D+++++W+ S P + + V K + ++K L + +++ D
Sbjct: 47 LADPEEYDKKFKEWNMSYLPMLPERWELVVIKQTSKQYHNVKTQLFR--KDVSDIIIATD 104
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FADAVDA 181
REGE +A +++ CH ++R S++ D+ I + +L D Q+ A +
Sbjct: 105 AGREGELVARWILD---KSGCHKPIKRLWISSVTDKAIREGFLSLKDGRQYNNLYYAAKS 161
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E D +G + TR ++T N LS G Q PTL + R EI++ +
Sbjct: 162 RAEADWLVGINATR------------ALTCKYNAQLSCGRVQTPTLAIIARREEEIRSFK 209
Query: 242 SEEFWTINCSHKSEEGTATFSWMR---GHLFDYTSAVII-YEMCVQEPTATVTKVRQQEK 297
EE++ ++C G +SW G L + + I E ++ +T V++ +
Sbjct: 210 PEEYYGLSCVA----GNVKWSWQNEKNGSLRSFKRSFITDLESSLKGQALQITDVQKSAR 265
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHG 356
+ P EL++ A+R F S++ T+ + + LY Q ++YPRT DS G+++
Sbjct: 266 KTFSPGLYDLTELQRDANRRFGFSAKETLNIMQRLYEQHKVLTYPRT--DSRYIGSDIVP 323
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESRWSQDH 414
++E++ + GPY + + + + D K H I PT+ S D
Sbjct: 324 TIKERLKACNIGPYKKFIPSLLKAPIKTSKAFVDDAKVSDHHAIIPTEEFVQLEHMSNDE 383
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFE------ 468
K+Y+LV+R F++ + +T ++ + AG+ F+ G++IL+ + +Y
Sbjct: 384 RKIYDLVIRRFISILYPAFEYEQTTLKASAAGQAFTAKGKIILSPGWKAIYDSSSAADSS 443
Query: 469 ----------SWGGLV--IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK--- 513
SW +P G+Q + + L +G T+PP +EA LL+ M+
Sbjct: 444 FLDAPEEDDASWQSCEQPLPLLKKGEQLSISQIALTTGKTKPPARFTEATLLTAMENPVK 503
Query: 514 ----------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
G+GT AT D I+KL F K N + + L + +
Sbjct: 504 YMESRDAKARKMLGETGGLGTVATRADIIEKLFHSFLIEKKGNEILITSKGKQLLELVPE 563
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
D+ KP L + E ++ ++ G A LA
Sbjct: 564 DLK----KPELTAKWELELSNIAKGAHKDAQFLA 593
>gi|293374509|ref|ZP_06620831.1| DNA topoisomerase [Turicibacter sanguinis PC909]
gi|292646888|gb|EFF64876.1| DNA topoisomerase [Turicibacter sanguinis PC909]
Length = 721
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 158/568 (27%), Positives = 254/568 (44%), Gaps = 93/568 (16%)
Query: 11 LNVAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L +AEKPSV + +A +L+ + QG EG+ ++T GHL+
Sbjct: 5 LVLAEKPSVGRDIARVLNCQKQGNGYLEGKD------------------YIVTWALGHLV 46
Query: 70 ELDFDERYR-KWHSCDPADLYHAPVRKH-----VPEDKKDIKKTLEEEARR-CQWLVLWL 122
L E Y K+ S + DL P KH +P+ K K E+ R+ +V+
Sbjct: 47 TLADPEAYDVKYKSWNLEDLPMLP--KHFKLVVMPKTSKQFKAVKEQMLRKDVSAIVIAT 104
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FADAV 179
D REGE +A +IE V ++R S++ D+ I + ++L D + + +A A+
Sbjct: 105 DAGREGELVARWIIE---KVGVKKPIKRLWISSVTDKAIKEGFKSLKDGHLYDNLYASAI 161
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
AR E D +G + TR ++T N LS G Q PTL + +R EI+
Sbjct: 162 -ARSEADWIVGMNATR------------ALTTKHNASLSCGRVQTPTLAMIAKREDEIKQ 208
Query: 240 HESEEFWTINC-SHKSEEGTATFSWMRGH-----LFDYTSAVIIYEMCVQEPTATVTKVR 293
+S+ F+ I+ SH +W FD + Q+P A + KV
Sbjct: 209 FKSKPFFGISAISH-----GLKLTWQDSKSKDVKTFDEDKVTALLTTLNQQP-AIIEKVT 262
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGT 352
+ EK +Y EL++ A+R F S++ T+ + + LY Q ++YPRT++ SS
Sbjct: 263 KVEKKEYAKGLYDLTELQRDANRLFGFSAKETLSIMQKLYEQHKALTYPRTDSRYISS-- 320
Query: 353 NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH---DDKA---HPPIHPTKFSSG 406
++ + +++ GPY A GL ++ DDK H I PT+ +
Sbjct: 321 DIVETLPDRLKAVAIGPYR----GAANGLLKSKIVANKSFVDDKKVSDHHAIIPTEQTVL 376
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
+ S K+++LVV+ FLA +S+P V +T + I E F+ G+ +++ Y +VY
Sbjct: 377 LTDLSDKERKIFDLVVKRFLAVLSKPFVYEQTTLLAKIGSENFTAKGKRVISAGYKEVYG 436
Query: 467 F--ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK----------- 513
F +S V+P G + + L G T+PP +E LLS M+
Sbjct: 437 FDEDSDDDQVLPIVEEGMKLPISRLIKTQGKTQPPAYFNEGTLLSAMENPARFMNSSDKE 496
Query: 514 --------AGIGTDATMHDHIKKLLDRF 533
G+GT AT D I+KL + F
Sbjct: 497 IAKTLSQTGGLGTVATRADIIEKLFNGF 524
>gi|167760347|ref|ZP_02432474.1| hypothetical protein CLOSCI_02721 [Clostridium scindens ATCC 35704]
gi|167662020|gb|EDS06150.1| DNA topoisomerase [Clostridium scindens ATCC 35704]
Length = 736
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 152/634 (23%), Positives = 276/634 (43%), Gaps = 97/634 (15%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPSVA+ +A +L ++ + S+Y ++T GHL+
Sbjct: 4 LVLAEKPSVARDIARVLDCHKNMPGAIEGSKY-----------------IVTWALGHLVT 46
Query: 71 L----DFDERYRKWH-SCDPA--DLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
L ++D+++++W+ S P + + V K + ++K L + +++ D
Sbjct: 47 LADPEEYDKKFKEWNMSYLPMLPERWELMVIKQTSKQYHNVKTQLFR--KDVSDIIIATD 104
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FADAVDA 181
REGE +A +++ CH ++R S++ D+ I + +L D Q+ A +
Sbjct: 105 AGREGELVARWILD---KSGCHKPIKRLWISSVTDKAIREGFLSLKDGRQYNNLYYAAKS 161
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E D +G + TR ++T N LS G Q PTL + R EI++ +
Sbjct: 162 RAEADWLVGINATR------------ALTCKYNAQLSCGRVQTPTLAIIARREEEIRSFK 209
Query: 242 SEEFWTINCSHKSEEGTATFSWMR---GHLFDYTSAVII-YEMCVQEPTATVTKVRQQEK 297
EE++ ++C G +SW G L + + I E ++ +T V++ +
Sbjct: 210 PEEYYGLSCVA----GNVKWSWQNEKNGSLRSFKRSFITDLESSLKGQALQITDVQKSAR 265
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHG 356
+ P EL++ A+R F S++ T+ + + LY Q ++YPRT DS G+++
Sbjct: 266 KTFSPGLYDLTELQRDANRRFGFSAKETLNIMQRLYEQHKVLTYPRT--DSRYIGSDIVP 323
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESRWSQDH 414
++E++ + GPY + + + + D K H I PT+ S D
Sbjct: 324 TIKERLKACNIGPYKKFIPSLLKAPIKTSKAFVDDAKVSDHHAIIPTEEFVQLEHMSNDE 383
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFE------ 468
K+Y+LV+R F++ + +T ++ + AG+ F+ G++IL+ + +Y
Sbjct: 384 RKIYDLVIRRFISILYPAFEYEQTTLKASAAGQAFTAKGKIILSPGWKAIYDSSSAADSS 443
Query: 469 ----------SWGGLV--IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK--- 513
SW +P G+Q + + L +G T+PP +EA LL+ M+
Sbjct: 444 FLDAPEEDDASWQSCEQPLPLLKKGEQLSISQIALTTGKTKPPARFTEATLLTAMENPVK 503
Query: 514 ----------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
G+GT AT D I+KL F K N + + L + +
Sbjct: 504 YMESQDAKARKMLGETGGLGTVATRADIIEKLFHSFLIEKKGNEILITSKGKQLLELVPE 563
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLA 591
D+ KP L + E ++ ++ G A LA
Sbjct: 564 DLK----KPELTAKWELELSNIAKGAHKDAQFLA 593
>gi|402817563|ref|ZP_10867151.1| DNA topoisomerase 1 [Paenibacillus alvei DSM 29]
gi|402505085|gb|EJW15612.1| DNA topoisomerase 1 [Paenibacillus alvei DSM 29]
Length = 667
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 148/638 (23%), Positives = 264/638 (41%), Gaps = 82/638 (12%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEV---IEVCRAVNCHLVLRRARFSALI 157
K + K L++ ++ + + L D DREGE IA+ + +E+ ++ C +V F+ +
Sbjct: 30 KGSVLKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDQSEACRVV-----FNEIT 84
Query: 158 DREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
+ + A + N A AR+ +D +G + +L K L
Sbjct: 85 KQAVKDAFKTPRQINMDLVHAQQARRILDRLVG---YKISPLLWKKVKKG---------L 132
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT--ATFSWMRGHLFDYTSAV 275
S G Q ++ +++R EI A EE+WTI + + A F M G + ++
Sbjct: 133 SAGRVQSVSVKLIIDRENEISAFIPEEYWTITARLNIGKSSFDAKFYSMNGEKRELSNEA 192
Query: 276 IIYEM--CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
+ E+ ++ + V +V+++E+L++P P +T L++ A+R + TM VA+ LY
Sbjct: 193 EVNEVLQAIKGSSFVVHEVKERERLRHPSPPFTTSSLQQEAARKLNFRAAKTMSVAQQLY 252
Query: 334 QA---------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
+ G I+Y RT++ T + QE+ G Y L +
Sbjct: 253 EGVDLGKEGTVGLITYMRTDS------TRISQTAQEEAGEYIKDQYGNEFLPETPRQYVK 306
Query: 385 PGSGGHDDKAHPPIHPTKFSSG----ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
+ D AH I PT +S S+D +LY+L+ F+A A+ V
Sbjct: 307 KSANAQD--AHEAIRPTSIMRSPDEMKSYLSRDQLRLYKLIWERFVASQMTSAIMDTMTV 364
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-----IPTYVHGQQFIPTTLTLDSGV 495
+I F +G I ++ VY + G V +P G +
Sbjct: 365 DIKTGEATFRANGSKIRFPGFMKVYVEGNDDGTVEDDKFLPPLAVGDSMKTEQIEPKQHF 424
Query: 496 TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMG 555
T+PPP +EA L+ +++ GIG +T ++ + R Y + +F PT +GE ++
Sbjct: 425 TQPPPRYTEARLVKTLEELGIGRPSTYAPTLETIQKRGY-VAIEEKKFVPTELGELIIQL 483
Query: 556 YDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK----- 610
++ E+ + ME D+ V G + VLA+ + + L A + +
Sbjct: 484 MEEFFPEILDVEFTAHMEEDLDHVGEGQQDWVKVLADFYESFEKRLLVAEEEMKEIEIED 543
Query: 611 -------------LLEAMGIF--FERWSGGEDQQAAGEVVRQCGI----CQESNMVLKKS 651
+ MG F F SG + + +V+ G+ C E +V ++S
Sbjct: 544 EVSDEICEKCGRHFVYKMGRFGKFLACSGFPECRNTRPIVKDTGVTCPKCHEGKLVERRS 603
Query: 652 RDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
+ G + GC +P+C + +W SV C SC
Sbjct: 604 KKGRVFYGCDRYPECDHVMWDRPSV-------KPCPSC 634
>gi|39997644|ref|NP_953595.1| DNA topoisomerase I [Geobacter sulfurreducens PCA]
gi|409912998|ref|YP_006891463.1| DNA topoisomerase I [Geobacter sulfurreducens KN400]
gi|39984536|gb|AAR35922.1| DNA topoisomerase I [Geobacter sulfurreducens PCA]
gi|298506584|gb|ADI85307.1| DNA topoisomerase I [Geobacter sulfurreducens KN400]
Length = 757
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 175/664 (26%), Positives = 277/664 (41%), Gaps = 101/664 (15%)
Query: 97 VPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEV--CRAVNCHLVLRRARFS 154
+PE K+ I +++E + L+L D DREGE I++ ++ + + +RR F
Sbjct: 57 LPESKRHID-AIKKELKASDSLLLATDPDREGEAISWHLLAALGVKPEKPPVPVRRVVFH 115
Query: 155 ALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRN 214
+ I AV+N D +Q DA AR +D +G + + F L K
Sbjct: 116 EITKDAIVHAVENPRDISQDLVDAQQARSILDYLVGFNLSPF---LWKKIRYG------- 165
Query: 215 LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG---TATFSWMRGHLFDY 271
LS G Q L + ER EIQA +S+E+WTI E G TA G D
Sbjct: 166 --LSAGRVQSVALRLICEREKEIQAFQSQEYWTIGAELAKEGGQKCTANLVEAEGKKLDK 223
Query: 272 -----TSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTM 326
+A ++ T TV KV + E+ + P P +T L++ A+R S++ TM
Sbjct: 224 FDIPDQAAADRLVKALENATFTVDKVTKSERKRTPAPPFTTSTLQQEAARKLGFSAKKTM 283
Query: 327 KVAEDLYQA--------GFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLD 376
A+ LY+ G I+Y RT++ S+ H ++ G P++ R
Sbjct: 284 ATAQKLYEGVAIDEGLVGLITYMRTDSVVLSNQALQEAHQVITSLYG-PEYALAKPRF-- 340
Query: 377 HAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW----SQDHYKLYELVVRHFLACVSQP 432
++N + AH + PT + + S D +KLY+L+ + +AC
Sbjct: 341 -----YKNKAKNAQE--AHEAVRPTSIARTPAELKKYLSSDQFKLYDLIWKRTVACQMAE 393
Query: 433 AVGAETIVEINIA-GEVFSTSGRVILAKNYLDVY------RFESWGGLVIPTYVHGQQFI 485
A+ +T V+I G F +G VI ++ +Y + E G +P G+
Sbjct: 394 ALLDQTSVDIGAGKGYRFRAAGTVIRFPGFMKLYIEGVDDQAEEKEG-TLPPLTEGELLK 452
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
L + T+PPP +EA L+ +++ GIG +T + LL+R YA D+ RF P
Sbjct: 453 LLKLLPEQHFTQPPPRYTEASLVKTLEEYGIGRPSTYASIMNTLLERKYARLDSK-RFIP 511
Query: 546 TNIGEAL-------VMGYDDM---------------GYELWKPNLRSMME--SDMKEVSV 581
++G + Y D G + WKP LR E + +
Sbjct: 512 EDVGMVVNDLLTNHFTTYVDYNFTATLEEELDQVSRGEKRWKPLLREFWEPFQGLLKQKE 571
Query: 582 GNKSKADVLANCLQQMKAC-----FLDARL-KKVKLLEAMG-----IFFERWSGGEDQQA 630
G SKAD+ + AC L +L K+ K + G + GE ++
Sbjct: 572 GEVSKADLTTEATDE--ACPECGKPLVVKLGKRGKFIACSGYKEGCTYTRNIDQGEGREQ 629
Query: 631 AGEVV--RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNS 688
A V+ +C C S M++K R G + C A+P C+N L + T +TC
Sbjct: 630 AEPVLSEEKCDKCG-SPMLIKDGRFGKYL-ACSAYPACKNIQPL----VKPKGTGHTCPE 683
Query: 689 CTPG 692
C G
Sbjct: 684 CKEG 687
>gi|224826190|ref|ZP_03699293.1| DNA topoisomerase I [Pseudogulbenkiania ferrooxidans 2002]
gi|224601827|gb|EEG08007.1| DNA topoisomerase I [Pseudogulbenkiania ferrooxidans 2002]
Length = 763
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 136/504 (26%), Positives = 222/504 (44%), Gaps = 57/504 (11%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLR-----RARFSALIDREIHQAVQNLVDPN 172
+ L D DREGE I++ ++++ +N +L+ R F + + A+ N D +
Sbjct: 77 IYLATDPDREGEAISWHLVQI---LNNKKLLKGKTAQRVVFHEITKNAVLDAIANPRDIS 133
Query: 173 QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
Q DA AR+ +D +G + + ML K LS G Q P L + E
Sbjct: 134 QELVDAQQARRALDYLVGFNLS---PMLWKKIRRG---------LSAGRVQSPALRLICE 181
Query: 233 RYWEIQAHESEEFWTINC-SHKSEE--GTATFSWMRGHL--FDYTSAVIIYEMCVQ--EP 285
R EI+A +E+W+I+ SHK + G F L FD S I + + E
Sbjct: 182 RENEIRAFTEQEYWSIHLDSHKGRQKFGAKLFELGGNKLDQFDIPSEAIQADTLARLAEQ 241
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA--------GF 337
ATV+ V +++K + P P +T L++ A R M+++ TM+ A+ LY+ G
Sbjct: 242 PATVSNVDKKKKTRNPAAPFTTSTLQQEAVRKLGMTTDRTMRTAQQLYEGVDIGQGTVGL 301
Query: 338 ISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395
I+Y RT+ S+ T + G ++ Q + L A ++N + AH
Sbjct: 302 ITYMRTDAVVLSNEALTEIRGYIESQ--------FEPAFLPKAPVTFKNKSKNAQE--AH 351
Query: 396 PPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFST 451
I PT ++ + + D +KLYE++ + LAC PA T V+I + VF
Sbjct: 352 EAIRPTSIERTPAAMKPFLTTDQFKLYEMIWKRTLACQMAPAKFDTTSVDITVGEGVFRA 411
Query: 452 SGRVILAKNYLDVYRFESWGGLV-----IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEAD 506
+G+V +L VY + +P G L + T+PPP SEA
Sbjct: 412 TGQVQTFAGFLAVYEEDVDDAEDEDNAKLPVLEVGDVLPVDKLYGEQHFTQPPPRFSEAS 471
Query: 507 LLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKP 566
L+ +++ GIG +T I L DR Y + D RF PT+ GE + + +
Sbjct: 472 LVKALEEFGIGRPSTYASIISTLKDREYVVLDKK-RFLPTDTGEIVNKFLTEHFGQYVDY 530
Query: 567 NLRSMMESDMKEVSVGNKSKADVL 590
N + +E + E++ G + V+
Sbjct: 531 NFTAKLEDQLDEIANGRREWVPVM 554
>gi|403388889|ref|ZP_10930946.1| DNA topoisomerase III [Clostridium sp. JC122]
Length = 733
Score = 152 bits (384), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 158/615 (25%), Positives = 268/615 (43%), Gaps = 86/615 (13%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKPSV + +A +L N R ++Y ++T GHL+
Sbjct: 4 ILVLAEKPSVGRDLARVLKCNSNKRSYIEGNKY-----------------IVTWALGHLV 46
Query: 70 EL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKK------DIKKTLEEEARRCQWLV 119
L +D++Y+ W+ +L P + + KK +IKK L + +V
Sbjct: 47 TLASPESYDDKYKSWNM---ENLPMLPNKMKLEVIKKSSKQFYEIKKLLGRND--IESVV 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FAD 177
+ D REGE +A +++ C L R S+ D+ I +NL + ++
Sbjct: 102 IATDAGREGELVARWILDKCHYRGS---LSRLWISSQTDKAILDGFKNLKNGKEYENLYK 158
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
A AR E D +G + TR ++T N LS G Q PTL +V R EI
Sbjct: 159 AATARAEADWVVGLNVTR------------ALTCRYNASLSAGRVQTPTLAMIVNRENEI 206
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+ + + ++TIN T + +FD A I +E TV +V++ K
Sbjct: 207 KHFKPKAYYTINGKCNGFNLTHVDNKNNSRIFDVKVAESIVAKTNKEE-GTVVEVKESAK 265
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTNLHG 356
Y P EL++ ++ F S++ T+ + + LY+ ++YPRT DS T++
Sbjct: 266 KNYAPMLYDLTELQRDCNKIFGYSAKQTLSIMQRLYENHKILTYPRT--DSRHITTDIVP 323
Query: 357 IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESRWSQDH 414
+++++ +G Y D + S +++ H I PT+ S S +
Sbjct: 324 TLKDRLKSISFGNYRMFCDDIIRKGIKANKSFVDNNRVSDHHAIIPTEERVIISHLSSEE 383
Query: 415 YKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL- 473
+Y+LV++ FL+ + P +T V++N+ GE F G+V+ +K + VY E
Sbjct: 384 RNVYDLVIKRFLSVMLPPFEYIQTTVDVNVKGERFLAKGKVVQSKGWKAVYDREMDDDKE 443
Query: 474 --------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK------------ 513
++P + G++ ++ + G T+PP +E LLS M+
Sbjct: 444 DIDDLREQMLPKFEKGEKVKILSVDMKKGETKPPARFNEGTLLSAMENPQKYVHVDKNAA 503
Query: 514 ------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPN 567
GIGT AT D I+KL + FY I+ PT+ G L+ D + +L P
Sbjct: 504 KTLGETGGIGTVATRADIIEKLYNMFY-IEKKGKDIIPTSKGIQLI---DLVPEDLKSPL 559
Query: 568 LRSMMESDMKEVSVG 582
L + ESD++ +S G
Sbjct: 560 LTAQWESDLELISKG 574
>gi|374582323|ref|ZP_09655417.1| DNA topoisomerase III [Desulfosporosinus youngiae DSM 17734]
gi|374418405|gb|EHQ90840.1| DNA topoisomerase III [Desulfosporosinus youngiae DSM 17734]
Length = 726
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 164/630 (26%), Positives = 264/630 (41%), Gaps = 113/630 (17%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSV 64
L + EKPSV + +A IL NQ +G C + ++
Sbjct: 3 KTLVLTEKPSVGREIARILHCNQ---------------------KGNGCFIGPKYVVVWA 41
Query: 65 TGHLMELD----FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIK-----KTLEEEARRC 115
GHL+ L +DE+Y+ W DL P + + K+ K K L +
Sbjct: 42 LGHLVTLADPELYDEKYKTWKI---EDLPMLPPKMELVVMKETAKQFGVVKNLMKNPEMA 98
Query: 116 QWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW- 174
L++ D REGE +A +I + ++R S+L +R I + +L +
Sbjct: 99 D-LIIATDAGREGELVARWII---KKAGWRKPVKRLWISSLTERAIKEGFNHLKPGKDYE 154
Query: 175 -FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER 233
A + R E D +G + TR ++T N LS G Q PTL VVER
Sbjct: 155 TLYAAAECRAEADWLVGLNVTR------------ALTCKYNAQLSAGRVQTPTLAMVVER 202
Query: 234 YWEIQAHESEEFWTINCSHKSEEGTATFSWM----RGHLFDYTSAVIIYEMCVQEPTATV 289
EI+ +++W+IN K T W + +FD A + + T V
Sbjct: 203 ENEIKQFVPKDYWSINVLAKG----VTLRWQDHSGQTRIFDKQKAEALAAKLTGQ-TGEV 257
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSF 348
+V+++ K + PP EL++ A+R + S++ T V + LY+ ++YPRT++
Sbjct: 258 IEVKKEAKKELPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYENHKLVTYPRTDSRYI 317
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP------GSGGHDDKAHPPIHPTK 402
S ++ + E++ GPY +D A G+ RN + H I PT+
Sbjct: 318 SE--DIVPTLPERLKSIALGPY----VDLARGILRNKLNITKRFADSSKVSDHHAIIPTE 371
Query: 403 FSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462
SR S + K+Y+L+VR FLA +S +T +++++ GE+ + G+++ K +
Sbjct: 372 QPPSLSRLSSEELKVYDLIVRRFLAVLSPAFEYEQTSIKVSLKGEIVTAKGKIVKLKGWR 431
Query: 463 DVYRFESWGGL-------------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
VY E G L +P G+ + L G T+PP +EA LLS
Sbjct: 432 KVY--EGQGHLDDQAENGDGDSEQTLPEIRKGELLNDLRVKLVPGKTKPPARHTEATLLS 489
Query: 510 CMDKA-----------------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
M+ G+GT AT + I+KL + FY + PT+ G L
Sbjct: 490 AMEHPGKLIGDEKLREAMEQSHGLGTPATRAEIIEKLFNSFYMNRQGK-EIIPTSKGIQL 548
Query: 553 VMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
V + EL P L + E + E+S G
Sbjct: 549 V---GLVPPELKSPVLTAKWEQQLTEISKG 575
>gi|415885845|ref|ZP_11547668.1| DNA topoisomerase III [Bacillus methanolicus MGA3]
gi|387588498|gb|EIJ80819.1| DNA topoisomerase III [Bacillus methanolicus MGA3]
Length = 697
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 163/614 (26%), Positives = 275/614 (44%), Gaps = 84/614 (13%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPSVA+ +A +L Q ++ +E N I +T GHL+E
Sbjct: 4 LVLAEKPSVAREIARVLGCKQ---------QHKHYFEGNKYI--------VTWALGHLIE 46
Query: 71 LD----FDERYRKWHSCDPADLYHAPVRKHVPEDK--KDIKKT------LEEEARR--CQ 116
L +D +Y+ W L P+ +P+ K IK+T +E A+R +
Sbjct: 47 LKMPEHYDTKYKTWR------LEDLPI---IPDKMGLKVIKQTSHQFRGIENLAKRPDIK 97
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
++ D REGE +A ++ + ++ + R S+ D+ I +L Q+ A
Sbjct: 98 DCIIATDAGREGELVARWIL---KKIHWKKPILRLWISSQTDKAIRDGFNHLKPGKQFDA 154
Query: 177 --DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
++ R E D IG + TR ++T N LS G Q PTL +++R
Sbjct: 155 LYESAVCRAEADWLIGLNVTR------------ALTTKYNDPLSAGRVQTPTLAMIIDRE 202
Query: 235 WEIQAHESEEFWTINCSHKSEEGTATFSWMRG---HLFDYTSAVIIYEMCVQEPTATVTK 291
EIQ +E+WTI K++ G+ SW R +F +A I++ ++ A V
Sbjct: 203 KEIQKFVPKEYWTI----KAQIGSLFASWERNGEKRIFSKETAEKIHKK-LEGNIAVVVS 257
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSS 350
+ +++K + P P EL++ A++ F S++ T V + LY Q ++YPRT++ ++
Sbjct: 258 IDRKKKSEQQPLPYDLTELQRDANKRFGFSAKKTSSVLQRLYEQYKLVTYPRTDSRYLTT 317
Query: 351 GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW 410
+ + + + + LL + + H I PT+ S
Sbjct: 318 DMEATMLDRLEAMSSGYKEEVRSLLANKGRVIAKRVFNNEKVTDHHAIIPTEERLNISDL 377
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEI-NIAGEVFSTSGRVILAKNYL------- 462
S D KLY+L+ R FLA P+ ETI + ++ GE+ S V++ +
Sbjct: 378 SADERKLYDLIARRFLALFY-PSYQYETIHAVFDVNGEILSARETVVVDPGFKRVLGKSN 436
Query: 463 DVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATM 522
D + G L I Q F + + +T PP SEAD+LS M+K G+GT AT
Sbjct: 437 DELDNQQLGDLTI-----SQSFKVKNVEMKKKLTDPPLRYSEADILSQMEKFGLGTPATR 491
Query: 523 HDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
D I++L++ ++ N RF PT G+ L+ + + EL P L + E +++ ++ G
Sbjct: 492 ADIIERLVE-TEVVERQNGRFYPTKKGKQLI---ELVNEELKSPELTARWEKELEAIARG 547
Query: 583 NKSKADVLANCLQQ 596
+ L N +Q
Sbjct: 548 KGNPKTFLHNIRKQ 561
>gi|347538119|ref|YP_004845543.1| DNA topoisomerase I [Pseudogulbenkiania sp. NH8B]
gi|345641296|dbj|BAK75129.1| DNA topoisomerase I [Pseudogulbenkiania sp. NH8B]
Length = 763
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 135/504 (26%), Positives = 222/504 (44%), Gaps = 57/504 (11%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLR-----RARFSALIDREIHQAVQNLVDPN 172
+ L D DREGE I++ ++++ +N +L+ R F + + A+ N D +
Sbjct: 77 IYLATDPDREGEAISWHLVQI---LNNKKLLKGKTAQRVVFHEITKNAVLDAIANPRDIS 133
Query: 173 QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
Q DA AR+ +D +G + + ML K LS G Q P L + E
Sbjct: 134 QELVDAQQARRALDYLVGFNLS---PMLWKKIRRG---------LSAGRVQSPALRLICE 181
Query: 233 RYWEIQAHESEEFWTINC-SHKSEE--GTATFSWMRGHL--FDYTSAVIIYEMCVQ--EP 285
R EI+A +E+W+I+ SHK + G F L FD S + + + E
Sbjct: 182 RENEIRAFTEQEYWSIHLDSHKGRQKFGAKLFELGGNKLDQFDIPSEAVQADTLARLAEQ 241
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA--------GF 337
ATV+ V +++K + P P +T L++ A R M+++ TM+ A+ LY+ G
Sbjct: 242 PATVSNVDKKKKTRNPAAPFTTSTLQQEAVRKLGMTTDRTMRTAQQLYEGVDIGQGTVGL 301
Query: 338 ISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395
I+Y RT+ S+ T + G ++ Q + L A ++N + AH
Sbjct: 302 ITYMRTDAVVLSNEALTEIRGYIESQ--------FEPAFLPKAPVTFKNKSKNAQE--AH 351
Query: 396 PPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFST 451
I PT ++ + + D +KLYE++ + LAC PA T V+I + VF
Sbjct: 352 EAIRPTSIERTPAAMKPFLTTDQFKLYEMIWKRTLACQMAPAKFDTTSVDITVGEGVFRA 411
Query: 452 SGRVILAKNYLDVYRFESWGGLV-----IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEAD 506
+G+V +L VY + +P G L + T+PPP SEA
Sbjct: 412 TGQVQTFAGFLAVYEEDVDDAEDEDNAKLPALEVGDVLPVDKLYGEQHFTQPPPRFSEAS 471
Query: 507 LLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKP 566
L+ +++ GIG +T I L DR Y + D RF PT+ GE + + +
Sbjct: 472 LVKALEEFGIGRPSTYASIISTLKDREYVVLDKK-RFLPTDTGEIVNKFLTEHFGQYVDY 530
Query: 567 NLRSMMESDMKEVSVGNKSKADVL 590
N + +E + E++ G + V+
Sbjct: 531 NFTAKLEDQLDEIANGRREWVPVM 554
>gi|313885079|ref|ZP_07818831.1| DNA topoisomerase I [Eremococcus coleocola ACS-139-V-Col8]
gi|312619770|gb|EFR31207.1| DNA topoisomerase I [Eremococcus coleocola ACS-139-V-Col8]
Length = 685
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 154/611 (25%), Positives = 261/611 (42%), Gaps = 69/611 (11%)
Query: 103 DIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLR-RARFSALIDREI 161
D K L++ A+ + + L D DREGE IA+ + + +N L + R F+ + +
Sbjct: 63 DTVKELKKLAKSAENVYLAADPDREGEAIAWHLSHL---LNLDLAEKNRVVFNEVTKDSV 119
Query: 162 HQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGP 221
+A ++ N DA AR+ +D +G S + +L K LS G
Sbjct: 120 KEAFKHPRTINYDLVDAQQARRILDRIVGYSIS---PLLWKKIKRG---------LSAGR 167
Query: 222 CQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT--ATFSWMRG---HLFDYTSAVI 276
Q TL +++R EI+ + EE+WTI S K ++ T A F + G L D S+
Sbjct: 168 VQSTTLKLIIDREKEIRIFKPEEYWTIPASFKKDKKTFDAEFYGLEGKKVKLNDEASSQD 227
Query: 277 IYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA- 335
I Q+ T V++V ++E+ + P +T L++ AS + TM +A+ LY+
Sbjct: 228 IMAKLDQKATFDVSEVEKKERRRGPNPAFTTSTLQQEASNRLNFRTGKTMMIAQQLYEGI 287
Query: 336 -------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSG 388
G I+Y RT++ S Q + + Y Q L G+ R+ G
Sbjct: 288 ALKSGTVGLITYMRTDSTRISDTAR-----QAAVSYISQN-YGQNYL--GKGVKRSNQQG 339
Query: 389 GHDDKAHPPIHPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINI 444
D AH I P+ S S + R S+D ++LY L+ F+A AV V I
Sbjct: 340 AQD--AHEAIRPSDPSITPDSIKERLSKDQFRLYSLIWSRFMASQMAHAVYDTVRVTIRQ 397
Query: 445 AGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSE 504
G F +G I +L +Y + L +P V G Q + + T+PP +E
Sbjct: 398 NGVDFRANGSAIKFDGFLKLYPGKDKDNL-LPDLVVGDQVKLSKIEPSQHFTQPPARFNE 456
Query: 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELW 564
A L+ +++ GIG +T I+ L R+Y +A RF PT +GE + ++ ++
Sbjct: 457 ASLVKALEEMGIGRPSTYAPTIETLRKRYYVKMNAK-RFEPTELGEIVNTTMEEFFPDIV 515
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK-------------- 610
+ + ME ++ ++ G + +VL Q A + +
Sbjct: 516 NSDFTAQMEQNLDDIEAGKREWIEVLDQFYQPFNTELSKAEEEMAEIEIKDEPAGFDCPE 575
Query: 611 ----LLEAMGIF--FERWSGGEDQQAAGEVVRQCGI----CQESNMVLKKSRDGNLMVGC 660
++ +G F F S D + +V++ G+ C + +V +KS+ + GC
Sbjct: 576 CGNPMVIKIGRFGKFYACSNFPDCRHTEAIVKKIGVTCPKCHQGEIVERKSKKNRVFFGC 635
Query: 661 LAFPQCRNAVW 671
+P+C W
Sbjct: 636 NRYPECDFVSW 646
>gi|357039327|ref|ZP_09101121.1| DNA topoisomerase I [Desulfotomaculum gibsoniae DSM 7213]
gi|355358226|gb|EHG05994.1| DNA topoisomerase I [Desulfotomaculum gibsoniae DSM 7213]
Length = 715
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 148/607 (24%), Positives = 254/607 (41%), Gaps = 76/607 (12%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
K DI K L+ ++ ++L D DREGE IA+ + V +N R A F+ + +
Sbjct: 60 KGDIIKELKAATKKADKVLLASDPDREGEAIAWHLANVLN-INEQDPCRIA-FNEITKQA 117
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
+ QAV++ ++ DA AR+ +D +G + + +K LS G
Sbjct: 118 VQQAVKHPRPVDRRKVDAQQARRILDRLVGYNLSPLLWRKVKKG------------LSAG 165
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEM 280
Q + + +R EIQA E EE+W++ + K +G + H D A I E
Sbjct: 166 RVQSVAMRLICDREEEIQAFEPEEYWSL--AAKLVKGRTGSLVAKLHKIDGQKAHIPDEA 223
Query: 281 CV-------QEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
V Q+ + V K+ ++EK + P P +T +++ A R ++ TM VA+ LY
Sbjct: 224 HVNEIRDDLQKESFEVAKITRREKKRQPALPFTTSSMQQEAYRKLNFTARKTMMVAQQLY 283
Query: 334 QA---------GFISYPRTETDSFSSGTNLHG--IVQEQIGHPDWGPYAQRLLDHAAGLW 382
+ G ++Y RT++ + + E+ G + P +R +
Sbjct: 284 EGLDLGKEGPVGLVTYIRTDSTRIAETAEQEADSFIVERFGA-GYVPAEKRRV------- 335
Query: 383 RNPGSGGHDDKAHPPIHPTKFSSGESRWSQ----DHYKLYELVVRHFLACVSQPAVGAET 438
G AH I PT Q D Y+LY+L+ F+A PA+ T
Sbjct: 336 ---APKGRSQDAHEGIRPTSVLREPDNIKQFLTRDQYRLYKLIWERFVASQMSPAIIDTT 392
Query: 439 IVEINIAGEVFSTSGRVILAKNYLDVY------RFESWGGLVIPTYVHGQQFIPTTLTLD 492
V++ +F +G +I ++ VY E+ +P G+Q L
Sbjct: 393 SVDVRAGKYIFRANGSIIKFPGFMQVYIEGRDDEEETGESKTLPELQEGEQLKLRALVPK 452
Query: 493 SGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
T+PPP ++A L+ +++ GIG +T + +L R Y +++ F PT +G +
Sbjct: 453 QHFTQPPPRFTDATLIKTLEEKGIGRPSTYAPIVDTILKRGYVVREKKN-FYPTELGLVV 511
Query: 553 VMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLL 612
V Y + + ME + ++ G+ + +L + + L+ K+++ +
Sbjct: 512 VDLLKKYFYNIIDVEFTAAMEQKLDDIEEGDVNWVSILEDFYMPFEE-LLEVADKEIEQI 570
Query: 613 EAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWL 672
+ + + EV CG NMV+K R G + C FP+CRNA L
Sbjct: 571 QV------------EDEVTDEVCELCG----RNMVIKMGRYGKFL-ACPGFPECRNARPL 613
Query: 673 --PGSVS 677
P VS
Sbjct: 614 LEPTGVS 620
>gi|423076079|ref|ZP_17064793.1| DNA topoisomerase [Desulfitobacterium hafniense DP7]
gi|361852896|gb|EHL05094.1| DNA topoisomerase [Desulfitobacterium hafniense DP7]
Length = 729
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 163/632 (25%), Positives = 268/632 (42%), Gaps = 114/632 (18%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSVTG 66
L + EKPSV + +A +L NQ +G C + ++T G
Sbjct: 5 LVLTEKPSVGRDIAKLLGCNQ---------------------KGNGCFIGSRYIVTWALG 43
Query: 67 HLMELD----FDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
HL+ L + E+Y++W D P D+ V K + +K+ L + + L
Sbjct: 44 HLVTLADPEAYGEKYKQWRLEDLPMLPKDM-ELVVIKETSKQYAAVKQLLRQPD--VEEL 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD- 177
++ D REGE +A +I ++R S+ D+ I + NL P + +
Sbjct: 101 IIATDAGREGELVARWIIG---KAGWKKPIKRLWISSQTDKAIREGFNNL-KPGKAYESL 156
Query: 178 --AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A + R + D +G + TR ++T N LS G Q PTL VVER
Sbjct: 157 YAAAECRAQADWYVGLNVTR------------ALTCKYNAQLSAGRVQTPTLALVVEREK 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWM-----RGHLFDYTSAVIIYEMCVQE---PTA 287
EIQ + +WTIN + + SW + +FD A E VQ+
Sbjct: 205 EIQNFVPKGYWTINARVQG----FSLSWQDKGNGQNRMFDQKKA----EQLVQKLRGHKG 256
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETD 346
V +++++ K + PP EL++ A+R + S++ T + + LY Q ++YPRT++
Sbjct: 257 QVAEIKKEAKREQPPQAYDLTELQRDANRKYGFSAKQTSSIMQQLYEQHKLVTYPRTDSR 316
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPY---AQRLLDHAAGLWRNPGSGGHDDKA---HPPIHP 400
S ++ + E++ GPY A+R+L P D+ H I P
Sbjct: 317 YLSE--DIVPTLPERLKTIAVGPYSELARRVLRTKI----TPTKRLVDNSKVTDHHAIIP 370
Query: 401 TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
T+ + ++ S + K+Y+L+VR F+A +S +T V++ I GE+F+ G+++ K
Sbjct: 371 TEQTVFLNKLSPEEAKIYDLIVRRFIAVLSPAFEYEQTTVKVEIQGELFTAKGKIVKQKG 430
Query: 461 YLDVYRFESWGG---------LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
+ VY +P Q L L G T+PP +EA LLS M
Sbjct: 431 WRSVYEGREAADEEADHEEQEQNLPDLQPKQTLEVLDLKLLPGKTKPPKRYTEATLLSAM 490
Query: 512 D-----------------KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVM 554
+ +G+GT AT D I+KL FY ++ PT+ G L+
Sbjct: 491 EHPGQRVNDEALRETLEKTSGLGTPATRADIIEKLFSSFYMERNGK-EIVPTSKGIQLI- 548
Query: 555 GYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+ EL P L + E + E+S G + +
Sbjct: 549 --GLVPSELKSPELTAKWEQQLSEISKGREDR 578
>gi|392425584|ref|YP_006466578.1| DNA topoisomerase III [Desulfosporosinus acidiphilus SJ4]
gi|391355547|gb|AFM41246.1| DNA topoisomerase III [Desulfosporosinus acidiphilus SJ4]
Length = 762
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 169/642 (26%), Positives = 268/642 (41%), Gaps = 80/642 (12%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPS A+ A L G+R R N+ Y ++T GHL+E
Sbjct: 5 LIVAEKPSQAREYANAL----GVRNRGDGYLENEDY-------------VITWCYGHLLE 47
Query: 71 LDFDERY-------RKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEE---------ARR 114
L+ E Y ++W L PV E ++ IK E++ + +
Sbjct: 48 LERPEAYMDLERVGKRW------SLNRLPVLPQAAEFRRIIKSGAEKQYQVVLHFLKSSQ 101
Query: 115 CQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL--VDPN 172
Q ++ D DREG+ + F+ EV A NC L+R S+L I + ++NL +
Sbjct: 102 IQEVICGTDADREGQ-LLFQ--EVWEAANCPKPLKRLWISSLTVSAIREGLENLQSAESV 158
Query: 173 QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
A A + R D G + T T L ++ DS N V+S G Q PTL +V
Sbjct: 159 AGLAAAGNGRSYADWDFGMNLTEGFTSLFGSY--DSSQKKPN-VISIGRVQTPTLALIVT 215
Query: 233 RYWEIQAHESEEFWTINCSHKSEEGTATFSWM-----RGHLFDYTSAVIIYEMCVQEPTA 287
R WEIQ + F+ IN + G W L A I +P A
Sbjct: 216 REWEIQDFIPQPFFEINAEFAACSGNYHGKWFDPSDEARRLLKLQEAEEILSRIQGKP-A 274
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDS 347
+ K+ Q+ + PP L AS+ + ++E +++A+ LY+ I+YPRT+
Sbjct: 275 YIGKLSQKSVKEPPPLLFDLTSLTVTASKRYGYTAEKVLQIAQSLYEKKGITYPRTDCAY 334
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDD-KAHPPIHPTKFSSG 406
++ + + + + PY + L++ A+ L G + AH I PT
Sbjct: 335 LPK--DMIPKLLDHLKAVNHEPY-RWLVEEASRLGVPTGKRVINTISAHHAIIPTNEKIP 391
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY- 465
+R ++D LY+L++R FLA PA+ +T VE I E F T G+V++ + VY
Sbjct: 392 WARLTKDEQNLYDLIIRRFLAVWFPPAIYKQTDVETRIESEYFRTKGKVLVNAGWKVVYG 451
Query: 466 --RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA--------- 514
E +P G++ + L+++ T PP ++ DLL M+ A
Sbjct: 452 KEDNEEGADESLPPLNQGEEVVIKDLSIEEKSTTPPKRYTQGDLLKAMEGAGRQVDDEIL 511
Query: 515 -------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDD---MGYELW 564
G+GT AT I+ LLDR Y ++ PT G L+ + L
Sbjct: 512 RQQLKGKGLGTVATRPAIIESLLDRGYIFQEQKA-LKPTTKGIELIKLIKERLSKAQLLI 570
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
+ ME ++ +V G S +A+ +K + R+
Sbjct: 571 SAEMTGQMEFNLAKVEKGELSLEAYMADVEGAIKQIIAELRV 612
>gi|295396860|ref|ZP_06806988.1| DNA topoisomerase TopA [Aerococcus viridans ATCC 11563]
gi|294974886|gb|EFG50585.1| DNA topoisomerase TopA [Aerococcus viridans ATCC 11563]
Length = 692
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 145/616 (23%), Positives = 261/616 (42%), Gaps = 84/616 (13%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L ++A++ + + L D DREGE IAF + + +N +R ++ + + +A+
Sbjct: 66 KELRKDAKKAEKVFLASDPDREGEAIAFHLAHIL-GLNPEDPIR-VTYNEVTKEAVKEAI 123
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
N N DA AR+ +D +G + + ML K LS G Q
Sbjct: 124 ANPRPINMDLVDAQQARRVLDRLVGYNLS---PMLWKKVKKG---------LSAGRVQSV 171
Query: 226 TLGFVVERYWEIQAHESEEFWTINCSHKSEEGT--ATFSWMRGHLFDYTSAVIIYEMCVQ 283
L ++ R EI+A + EE+WT+ S + T A S +G D + + +
Sbjct: 172 ALHMIINRENEIRAFKPEEYWTVEGSFIKDRKTFKANASKFKGKKLDLKNEADVKAFMAE 231
Query: 284 EPTA--TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
T TV V ++E+ + P P +T +++ A++ + TM VA+ LY+
Sbjct: 232 IKTQDFTVENVTEKERKRNPQKPFTTSSMQQEAAKKLNFRTRKTMMVAQQLYEGIKLGSG 291
Query: 336 ---GFISYPRTET----DSFSSG-----TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWR 383
G I+Y RT++ DS +G TN +G +E +G+ AQ
Sbjct: 292 APVGLITYMRTDSTRISDSAKAGATSYITNTYG--KEYLGYQAASKQAQ----------- 338
Query: 384 NPGSGGHDDKAHPPIHPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETI 439
G D AH I P+ + + S+D ++LY L+ F+A + PA+
Sbjct: 339 ----GSQD--AHEAIRPSSADRTPDAVKDYLSRDQFRLYSLIWSRFMASLMAPAIYDTVS 392
Query: 440 VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPP 499
++ F +G I + Y VY + ++P V+G+ L T+PP
Sbjct: 393 ADLVQNQATFRANGSKIKFEGYQKVYTEANNKDNILPELVNGETVKSKDLEPSQHFTQPP 452
Query: 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
+EA L+ +++ G+G +T I+ L+ R+Y +K RF PT +GE + +
Sbjct: 453 ARYTEASLIKKLEEDGVGRPSTYSPTIETLIKRYY-VKLEAKRFEPTELGEIVDKMIAEF 511
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ--QMKACFLDARLKKVKLLEAMGI 617
E+ + + +E ++ E+ K +V+ + + Q + + ++K+++ +
Sbjct: 512 FPEIVDTSFTADLEKELDEIETDQKEWVEVIDSFFKPFQKELEKAEVEMEKIEIKDEPAG 571
Query: 618 FFERWSGGE------------------DQQAAGEVVRQCGI----CQESNMVLKKSRDGN 655
F GGE D + +V++ G+ C E +V +KS+
Sbjct: 572 FKCPVDGGEMVIKMGRFGKFYACANFPDCRHTEAIVKEIGVTCPKCHEGQVVERKSKKNR 631
Query: 656 LMVGCLAFPQCRNAVW 671
+ GC +P C W
Sbjct: 632 IFYGCSRYPDCDFTDW 647
>gi|108803595|ref|YP_643532.1| DNA topoisomerase III [Rubrobacter xylanophilus DSM 9941]
gi|108764838|gb|ABG03720.1| DNA topoisomerase III [Rubrobacter xylanophilus DSM 9941]
Length = 701
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 187/706 (26%), Positives = 300/706 (42%), Gaps = 107/706 (15%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEKPSV + +AG L +++ REG + + +++ GHL E
Sbjct: 3 LIVAEKPSVGRDIAGALGRHR----REGDALVGSGWVVTWAL-------------GHLAE 45
Query: 71 LD----FDERYRKWHSCDPADL---YHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
L + Y++W + L + V E + +++ + + + +V D
Sbjct: 46 LAPPDAYGAEYKRWSLQNLPILPERFRVRVNPRTRERFEAVRRWMRDPS--VTEVVNACD 103
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVD-PN-QWFADAVDA 181
REGE I + ++ R C +RR S+L I + +L D P+ + DA +
Sbjct: 104 AGREGELIFAYLYQLSR---CEKPVRRLWVSSLTPEAIREGFGSLRDGPSMKPLEDAARS 160
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E D +G + TR ++ S D VLS G Q PTL +VER EI+
Sbjct: 161 RAEADWIVGMNATRAYSVRF------SRPGD---VLSVGRVQTPTLRLLVEREREIEDFR 211
Query: 242 SEEFWTINCSHKSEEGTATFSWMR---GHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
E F+T++ + T W R L + +A I E V+ T V K ++
Sbjct: 212 PERFFTVHARFARDGKTYDGLWFREKESRLKEREAAEQIAEK-VRGGTGVVKKAERRRTS 270
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTNLHGI 357
+ PP EL++ A+ + ++E T++ A+ LY+ I+YPRT + S ++ G
Sbjct: 271 ERPPLLYDLTELQRNANARYGFTAERTLRAAQALYEERKLITYPRTSSRYLSG--DMVGT 328
Query: 358 VQEQI----GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPT--KFSSGESR 409
++ ++ G P+ P+A RLL AAG D K H I PT K S G
Sbjct: 329 LKRRVEAAGGLPELAPFAGRLL--AAGSLPVGRRVVDDSKVTDHHAIVPTDRKPSGG--- 383
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFES 469
D K+Y+LV R FLA A T V GE F + GRV+L + ++Y +
Sbjct: 384 LPPDEAKVYDLVARRFLAVFFPAARFENTTVVTEARGETFLSKGRVVLEAGWRELY-PDG 442
Query: 470 WGGL------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA--------- 514
GG +P GQ++ + + G T+PPP SE+ LL M+ A
Sbjct: 443 VGGRKEKEPPALPPVEAGQEWRVAKVGVKEGETKPPPRYSESALLGAMETAGKLVEDEEL 502
Query: 515 -------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPN 567
G+GT AT I++L+ Y ++ PT G AL+ D L P
Sbjct: 503 RQQMKDSGLGTPATRAAIIERLIKVGYVEREKKA-LVPTAKGRALISLLADS--PLSSPE 559
Query: 568 LRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGED 627
+ + E + + G + + D +++ + F + ++ V+ +E I GG
Sbjct: 560 MTARWERRLARIERGEERRPDFMSDI-----SGFAASVVEGVRRMEGEKIAA---PGG-- 609
Query: 628 QQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ--CRNAVW 671
GE + C C + KK+ GC A+ + C A+W
Sbjct: 610 ---GGEALGACPKCGSPVVETKKA------YGCSAWRKTGCDFAIW 646
>gi|219670782|ref|YP_002461217.1| DNA topoisomerase III [Desulfitobacterium hafniense DCB-2]
gi|219541042|gb|ACL22781.1| DNA topoisomerase III [Desulfitobacterium hafniense DCB-2]
Length = 729
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 163/632 (25%), Positives = 268/632 (42%), Gaps = 114/632 (18%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSVTG 66
L + EKPSV + +A +L NQ +G C + ++T G
Sbjct: 5 LVLTEKPSVGRDIAKLLGCNQ---------------------KGNGCFIGSRYIVTWALG 43
Query: 67 HLMELD----FDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
HL+ L + E+Y++W D P D+ V K + +K+ L + + L
Sbjct: 44 HLVTLADPEAYGEKYKQWRLEDLPMLPKDM-ELVVIKETSKQYAAVKQLLRQPD--VEEL 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD- 177
++ D REGE +A +I ++R S+ D+ I + NL P + +
Sbjct: 101 IIATDAGREGELVARWIIG---KAGWKKPIKRLWISSQTDKAIREGFNNL-KPGKAYESL 156
Query: 178 --AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A + R + D +G + TR ++T N LS G Q PTL VVER
Sbjct: 157 YAAAECRAQADWYVGLNVTR------------ALTCKYNAQLSAGRVQTPTLALVVEREK 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWM-----RGHLFDYTSAVIIYEMCVQE---PTA 287
EIQ + +WTIN + + SW + +FD A E VQ+
Sbjct: 205 EIQNFVPKGYWTINARVQG----FSLSWQDKGNGQNRMFDQRKA----EQLVQKLRGHKG 256
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETD 346
V +++++ K + PP EL++ A+R + S++ T + + LY Q ++YPRT++
Sbjct: 257 QVAEIKKEAKREQPPQAYDLTELQRDANRKYGFSAKQTSSIMQQLYEQHKLVTYPRTDSR 316
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPY---AQRLLDHAAGLWRNPGSGGHDDKA---HPPIHP 400
S ++ + E++ GPY A+R+L P D+ H I P
Sbjct: 317 YLSE--DIVPTLPERLKTIAVGPYSELARRVLRTKI----TPTKRLVDNSKVTDHHAIIP 370
Query: 401 TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
T+ + ++ S + K+Y+L+VR F+A +S +T V++ I GE+F+ G+++ K
Sbjct: 371 TEQTVFLNKLSPEEAKIYDLIVRRFIAVLSPAFEYEQTTVKVEIQGELFTAKGKIVKQKG 430
Query: 461 YLDVYRFESWGG---------LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
+ VY +P Q L L G T+PP +EA LLS M
Sbjct: 431 WRSVYEGREAADEEADHEEQEQNLPDLQPKQTLEVLDLKLLPGKTKPPKRYTEATLLSAM 490
Query: 512 D-----------------KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVM 554
+ +G+GT AT D I+KL FY ++ PT+ G L+
Sbjct: 491 EHPGQRVNDEALRETLEKTSGLGTPATRADIIEKLFSSFYMERNGK-EIVPTSKGIQLI- 548
Query: 555 GYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+ EL P L + E + E+S G + +
Sbjct: 549 --GLVPSELKSPELTAKWEQQLSEISKGREDR 578
>gi|253578482|ref|ZP_04855754.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850800|gb|EES78758.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 734
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 161/628 (25%), Positives = 280/628 (44%), Gaps = 107/628 (17%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPSVA+ +A +L Q + N ++ G+ ++T GHL+
Sbjct: 4 LVIAEKPSVARDIARVLHCTQ---------------KGNGTLEGK--DYVVTWALGHLVT 46
Query: 71 L----DFDERYRKWH-SCDPA--DLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
L ++D++Y KW S P D V + + +K L + +++ D
Sbjct: 47 LADPEEYDKKYMKWEISTLPMMPDRMKLVVIRQTGKQYNVVKTQLYR--KDINDIIIATD 104
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FADAVDA 181
REGE +A +++ +CH +RR S++ D+ I + NL + +++ A A
Sbjct: 105 AGREGELVARWILD---KADCHKPIRRLWISSVTDKAIKEGFGNLKNGHEYDNLYRAAVA 161
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E D +G + TR ++T N LS G Q PTL + +R EI+A +
Sbjct: 162 RAEADWLVGMNGTR------------ALTCKYNAQLSCGRVQTPTLAMIAKREEEIRAFK 209
Query: 242 SEEFWTINCSHKSEEGTATFSWMRG-----HLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
+E++ I + G T++W F+ A I ++ ++ + VT V +E
Sbjct: 210 PKEYYGITL----KAGDITWTWKEPKSKSFRTFNKERAEEISDV-LRNQSLEVTSVTSKE 264
Query: 297 KLKYPP--YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTN 353
K + P Y L+T L++ A+R + S++ T+ + + LY+ ++YPRT DS G +
Sbjct: 265 KKSFAPGLYDLTT--LQREANRKYGYSAKQTLNIMQRLYENHKVLTYPRT--DSRYIGKD 320
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP----GSGGHDDKA--HPPIHPTKFSSGE 407
+ ++E++ GPY + A L P GS D K H I PT+
Sbjct: 321 IVPTIKERLRACATGPYRK----LAGALMNQPVRANGSFVDDKKVSDHHAIIPTEQFVQL 376
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR- 466
+ + K+Y++VVR FL+ + P V + +E +AGE+F+ SG+V+ + + DVY
Sbjct: 377 DHMTNEERKIYDMVVRRFLSVLYPPFVYEQVSMEGIVAGELFAASGKVVKSAGWKDVYEN 436
Query: 467 -------------FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK 513
+ +P G++ +++++G T+PP +EA LL+ M+
Sbjct: 437 TGDTEEDEDTADDAQKLKDQKLPQMKKGERLHIENVSMNTGRTKPPARFTEATLLAAMEN 496
Query: 514 -------------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVM 554
G+GT AT D I+KL + F K N + + L +
Sbjct: 497 PVRYMESHDTKAAKTLGETGGLGTVATRADIIEKLFNSFLMEKKGNEIHLTSKAKQLLEL 556
Query: 555 GYDDMGYELWKPNLRSMMESDMKEVSVG 582
+ EL KP L + E + ++ G
Sbjct: 557 ----VPEELRKPELTADWEMKLGNIAKG 580
>gi|333376359|ref|ZP_08468143.1| DNA topoisomerase TopA [Kingella kingae ATCC 23330]
gi|332968289|gb|EGK07363.1| DNA topoisomerase TopA [Kingella kingae ATCC 23330]
Length = 772
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 162/668 (24%), Positives = 277/668 (41%), Gaps = 111/668 (16%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVN----CHLVLRRARFSALIDREIHQAVQN 167
A+ + + L D DREGE I++ + E+ ++ ++R F + + + A+QN
Sbjct: 71 AKEAEHIYLATDPDREGEAISWHIAEILKSKRGMKGVMDKIQRVVFHEVTPKGVQAAIQN 130
Query: 168 LVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTL 227
+ DA R+ +D +G + + +L K LS G Q P L
Sbjct: 131 PRSLDMNLVDAQQTRRALDYLVGFNLS---PLLWKKIRYG---------LSAGRVQSPAL 178
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEGTATFS-----WMRGHLFDYT------SAVI 276
+ ER EI+A ES+E+W+I+ S +G FS W L ++ A I
Sbjct: 179 RLICERENEIKAFESQEYWSIHLD--SHKGRTKFSAKLTHWQNNKLEQFSLPDEASQASI 236
Query: 277 IYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA- 335
+ +Q TA V V +++ + P P +T +++ A R +++ TM+ A+ L++
Sbjct: 237 L--AALQGKTAQVADVTKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGI 294
Query: 336 -------GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPG 386
G I+Y RT++ + S T + ++ +IG L +A +++
Sbjct: 295 DVGQGAVGLITYMRTDSVTLSEDALTEIRHYIENKIG--------ADFLPSSAKMYKTKS 346
Query: 387 SGGHDDKAHPPIHPTK-FSSGESR---WSQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
+ AH I PT + S ES S D +KLY+++ + +AC A T V+I
Sbjct: 347 KNAQE--AHEAIRPTSVYRSPESVKPFLSADQFKLYQMIWQRTVACQMVDAKFDATTVDI 404
Query: 443 NIAGEVFSTSGRVILAKNYLDVYRFESWGGLV------IPTYVHGQQFIPTTLTLDSGVT 496
N+ VF +G+V++ +L VY+ +P G L + T
Sbjct: 405 NVGEGVFRATGQVLVFAGFLSVYQEGEDEEDAAEDQKKLPEMAVGDVVPVDNLYGEQHFT 464
Query: 497 RPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY 556
+PPP +EA L+ +++ GIG +T IK L DR Y I + RF PT+ GE +
Sbjct: 465 QPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVIVE-QRRFQPTDTGEIVNKFL 523
Query: 557 DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM-----------KACFLDAR 605
+ + + + +E + E++ G + V+ + +A F
Sbjct: 524 TEHFEQYVDYDFTAKLEDQLDEIANGKREWIPVMDKFWKGFHKQVVEKEGIERAKFTTEE 583
Query: 606 LKKV-------KLLEAMG-------------IFFERWSGGEDQQAAGEVV---------- 635
L + KL G + R +QAA V
Sbjct: 584 LDETCPQCGNHKLQIKFGRAGRFVACAGYPECSYTRNVNETAEQAAERVAKEVAEQAELE 643
Query: 636 -RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
R+C C S +V K SR G+ +GC +P+C++ L + T TC C G
Sbjct: 644 GRECPKCG-SQLVYKTSRSGSKFIGCANYPKCKHVEPL----EKPKDTGVTCPQCGKG-- 696
Query: 695 YLIQFKFR 702
+L++ K R
Sbjct: 697 HLVERKSR 704
>gi|334135435|ref|ZP_08508925.1| DNA topoisomerase [Paenibacillus sp. HGF7]
gi|333607033|gb|EGL18357.1| DNA topoisomerase [Paenibacillus sp. HGF7]
Length = 715
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 164/605 (27%), Positives = 260/605 (42%), Gaps = 75/605 (12%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPSVAK +A +L Q ++ YE P H++ T GHL+
Sbjct: 5 LVLAEKPSVAKEIARVLGCGQ---------KHKSYYE-------GPGHVV-TWALGHLVG 47
Query: 71 L----DFDERYRKWHSCDPADLYHAPVR---KHVPEDKKDIKKTLEEEARR-CQWLVLWL 122
L ++D RY+KW + DL P R K + E + + R+ L++
Sbjct: 48 LAEPEEYDTRYQKW---NLEDLPIIPGRMKLKVLKETSHQFRAIADLAKRKDLAELIIAT 104
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FADAV 179
D REGE +A ++E+ R + +R S+ D+ I + NL Q+ F AV
Sbjct: 105 DSAREGELVARWIMEMVR---WNKPFQRLWISSQTDKAIREGFANLKPGKQYDRLFQSAV 161
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
R E D IG + TR ++T + LS G Q PTLG +++R EI+
Sbjct: 162 -CRAEADWLIGLNITR------------ALTSKYDAQLSAGRVQTPTLGMIMDREKEIRN 208
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
S E+WT+ + GT LF+ + + V + V V++ EK +
Sbjct: 209 FRSVEYWTVQADFGAFRGTWRQRSGESRLFERERVDELVQR-VSGKSGKVVSVKKTEKTE 267
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHGIV 358
P EL++ A+R F S++HT+ + LY Q ++YPRT++ +S ++ G +
Sbjct: 268 PQPLAYDLTELQRDANRRFGFSAKHTLSTLQRLYEQHKLVTYPRTDSRYLTS--DMTGTL 325
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESRWSQDHYK 416
+E++ GPYA G D K H I PT S S D K
Sbjct: 326 KERLQSVAVGPYAPLAKPLMKGQLPVSKRIVDDSKVSDHHAIIPTDEYVNLSALSTDERK 385
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY----------- 465
LY+L+VR FLA A T + + + GE F +GRV+ + VY
Sbjct: 386 LYDLIVRRFLALFYPAARYETTAMVVEVDGEPFHVAGRVVKDAGWRSVYGPGTAADSGDG 445
Query: 466 -------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
+ +P G + + T+PP +EA LL+ M+K +GT
Sbjct: 446 DEEDGGEGADRADLQELPALSAGDSAGTVRCRVGTHRTQPPKRHTEATLLTQMEKHHLGT 505
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
AT + I+KL+ ++ PT G L+ + + EL P L + E ++++
Sbjct: 506 PATRAEIIEKLVSSDTIEREGGC-LHPTGKGTQLI---ELVAEELRSPELTAKWEQELED 561
Query: 579 VSVGN 583
++ G
Sbjct: 562 IARGR 566
>gi|374994369|ref|YP_004969868.1| DNA topoisomerase III [Desulfosporosinus orientis DSM 765]
gi|357212735|gb|AET67353.1| DNA topoisomerase III [Desulfosporosinus orientis DSM 765]
Length = 753
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 162/602 (26%), Positives = 253/602 (42%), Gaps = 101/602 (16%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L VAEKPS A+ A L G R Y N ++T GHL+
Sbjct: 4 TLIVAEKPSQAREYAVAL----------GVKRKGDGYLEN-------DQYVITWCYGHLL 46
Query: 70 ELDFDERY-------RKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
EL+ E Y R+W L PV + + ++ +KK E A++ Q ++ WL
Sbjct: 47 ELERPEAYMDLEQVGRRW------SLRRLPVLPSLNDFRRVVKK---ESAKQYQVVLNWL 97
Query: 123 ------------DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL-- 168
D DREG+ + F+ E+ A NC L R S+L I + ++NL
Sbjct: 98 SSSEITQVICGTDADREGQ-LLFQ--EIWDAANCRKPLSRLWISSLTTAAIREGLKNLRS 154
Query: 169 VDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLG 228
+ A A + R D G + T T L +F + R V+S G Q PTL
Sbjct: 155 AETVAGLAAAGNGRAFADWDFGMNLTEGFTALFGSFDTER---KRPNVISIGRVQTPTLA 211
Query: 229 FVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWM-----RGHLFDYTSAVIIYEMCVQ 283
+VER WEI++ ++F+ + K+E+G W+ + D A I + Q
Sbjct: 212 LIVEREWEIESFVPQQFYEVKAEFKAEQGNYYGKWIDPGDDTKRITDLQEAESIV-LKTQ 270
Query: 284 EPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRT 343
+++++ ++E L+ P L S+ + S+E +++A+ LY+ I+YPRT
Sbjct: 271 GKLGSISEMEEKEILEPAPLLFDLTSLTIAGSKKYGYSAEKVLQLAQSLYEKKAITYPRT 330
Query: 344 ETDSFSSG------TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDD-KAHP 396
+ S +L+ + QE PY + L D A G G + AH
Sbjct: 331 DCAYLSEDILPKLPAHLNAVCQE--------PY-KDLADQARGFGLPKGKRVINTITAHH 381
Query: 397 PIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVI 456
I PT R ++D LY+L+VR FLA PA +T+V + E F T G+ +
Sbjct: 382 AIIPTTEKVVLERLNRDEQHLYDLIVRRFLAVWFPPARYYQTVVMTLVESETFRTKGKAL 441
Query: 457 LAKNYLDVY------RFESWG---GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
L+ + VY + S G +P + GQ ++ D T+PP ++ DL
Sbjct: 442 LSLGWKAVYDHSDLKKHGSAGEEEEAALPPLLKGQVVQVKEVSWDEKSTKPPKPYTQGDL 501
Query: 508 LSCMDKA----------------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEA 551
L M+ A G+GT AT I+ L+DR Y + + P+ G
Sbjct: 502 LKAMEGAGKQIDDEILRQQLKGKGLGTVATRPAIIESLIDRGYIFQKQKS-LRPSAKGVE 560
Query: 552 LV 553
L+
Sbjct: 561 LI 562
>gi|347528630|ref|YP_004835377.1| DNA topoisomerase I [Sphingobium sp. SYK-6]
gi|345137311|dbj|BAK66920.1| DNA topoisomerase I [Sphingobium sp. SYK-6]
Length = 867
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 160/615 (26%), Positives = 259/615 (42%), Gaps = 94/615 (15%)
Query: 100 DKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC-HLVLRRARFSALID 158
DK K + +EA++ L+L D DREGE I++ V EV RA + R F+A+
Sbjct: 57 DKARQLKAITDEAKKADELILATDPDREGEAISWHVQEVLRAKKALPERVERVTFNAITK 116
Query: 159 REIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLS 218
I +A+++ + DA AR+ +D +G + + L S
Sbjct: 117 ATITEAMKHPRALDDDLIDAYRARRALDYLVGFTLSPVLWRKLPG------------AKS 164
Query: 219 YGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFS-----WMRGHLFDYTS 273
G Q L +VER EI+A S+E+W++ E+G F W RG D S
Sbjct: 165 AGRVQSVALRLIVEREREIEAFVSQEYWSVTALL--EQGGQRFDARLVRW-RGEKLDRLS 221
Query: 274 A-----VIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKV 328
+ + V+ TV+ V + + PP P +T L++ A+R +S+ TM+V
Sbjct: 222 IGKEGDALAAKADVEAGRFTVSSVETKPATRNPPPPFTTSTLQQEAARKLGLSASETMRV 281
Query: 329 AEDLYQAGFISYPRT---ETDSFSSGTNLHGIVQEQIGH--PDWGPYAQRLLDHAAGLWR 383
A+ LY+ G I+Y RT + D + + I + G PD + Q +A
Sbjct: 282 AQQLYEDGAITYMRTDGVQMDESAISAARNAIAKRYDGGYLPDKPRHYQTKAKNA----- 336
Query: 384 NPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEIN 443
+AH I PT FS ES S H KLY+L+ + LA A T VE+
Sbjct: 337 --------QEAHEAIRPTDFSR-ESAGSGVHAKLYDLIFKRALASQMASARLERTAVELT 387
Query: 444 --IAGEVFSTSGRVILAKNYLDVYR--------------FESWGGLVIPTYVHGQQFIPT 487
V +G+V+L +L +Y E ++P G Q
Sbjct: 388 DGTGQHVLRATGQVVLFPGFLALYEEGRDDPVGRQGAGDGEDEESRLLPALKAGDQPAKK 447
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+ D T+PPP SEA L+ +++ GIG +T I+ L DR Y ++ RF
Sbjct: 448 DVRADQHFTQPPPRYSEASLVKRLEELGIGRPSTYASTIQTLKDRDY-VRIEKNRFFAEE 506
Query: 548 IGEALVMGYDDMGYELWKP-NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARL 606
G LV + + +E + + + +E ++ E+S G A Q ++A + D +
Sbjct: 507 SGR-LVTAFLERFFERYVSYDFTAGLEEELDEISGGR-------AQWQQVLEAFWRDFKP 558
Query: 607 KKVKLLE--------------AMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSR 652
K +++E A +F ++ G + R C +C + + L+ R
Sbjct: 559 KTAEIMEQKPSEITAALDEYLAPMLFPDKGDGSDP--------RLCPLCHDGRLSLRGGR 610
Query: 653 DGNLMVGCLAFPQCR 667
G + C +P+CR
Sbjct: 611 YGAF-IACSNYPECR 624
>gi|225571265|ref|ZP_03780261.1| hypothetical protein CLOHYLEM_07360 [Clostridium hylemonae DSM
15053]
gi|225159741|gb|EEG72360.1| hypothetical protein CLOHYLEM_07360 [Clostridium hylemonae DSM
15053]
Length = 745
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 162/658 (24%), Positives = 278/658 (42%), Gaps = 107/658 (16%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMT 62
G + L +AEKPSVA+ +A +L K Q EG +Y ++T
Sbjct: 9 GDYVMKSLVLAEKPSVARDIARVLHCKKQIPGAMEG-DKY-----------------IVT 50
Query: 63 SVTGHLMEL----DFDERYRKWHSCDPADL---YHAPVRKHVPEDKKDIKKTLEEEARRC 115
GHL+ L +D++Y++W+ D + + V K + +K L +
Sbjct: 51 WALGHLVTLADPEGYDKKYKEWNMSDLPMIPKKWELVVIKQTSRQYQSVKTQLFR--KDV 108
Query: 116 QWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWF 175
+++ D REGE +A +++ CH L+R S++ D+ I + NL D +
Sbjct: 109 SDIIIATDAGREGELVARWILD---KSGCHKPLKRLWISSVTDKAIREGFANLKDGRDYN 165
Query: 176 A--DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER 233
A A +R E D +G + TR ++T N LS G Q PTL + R
Sbjct: 166 ALYHAAKSRAEADWLVGINATR------------ALTCKYNAQLSCGRVQTPTLAMIARR 213
Query: 234 YWEIQAHESEEFWTINCSHKSEEGTATFSWMRG-----HLFDYTSAVIIYEMCVQEPTAT 288
EI+ +E++ + C+ G ++W F+ I C++E
Sbjct: 214 EEEIRQFTPKEYYGLECTA----GKIKWTWQESKSGSCRCFNKEFMENI-SSCIKEEPLK 268
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDS 347
+ +++ K + P EL++ A+R F S++ T+ + + LY+ ++YPRT DS
Sbjct: 269 IEAIKKTAKKAFSPGLYDLTELQRDANRRFGFSAKETLNIMQRLYENHKVLTYPRT--DS 326
Query: 348 FSSGTNLHGIVQEQIGHPDWGPY---AQRLLDHAAGLWRNPGSGGHDDKA---HPPIHPT 401
GT++ ++E++ GPY A RL++ + DDK H I PT
Sbjct: 327 RYIGTDIVPTIKERLKACSVGPYKSVAGRLINKPVQV----NKSFVDDKKISDHHAIIPT 382
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY 461
+ + + K+Y+LVVR FL+ + P +T + + AG++F+ G+V+ + +
Sbjct: 383 EEYVQLDHMTNEERKIYDLVVRRFLSVLYPPFEYEQTTMTADAAGQIFAARGKVVRSMGW 442
Query: 462 LDVYRFESW---------------GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEAD 506
Y E W +P GQ F + + + +G T+PP +EA
Sbjct: 443 KAAYD-EKWDDGEDSGDNTVEPELADQSLPELTKGQTFHISAVRVTTGRTKPPARFTEAT 501
Query: 507 LLSCMDK-------------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
LLS M+ G+GT AT D I+KL F I+ T+
Sbjct: 502 LLSAMENPVKYMDSSDAKARKTLGETGGLGTVATRADIIEKLFHSFL-IEKKGREIVITS 560
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
G+ L+ + + +L KP L + E ++ ++ G D L + K + R
Sbjct: 561 KGKQLL---ELVPEDLKKPELTASWEMELSGIARGTHKDTDFLQDIQDYTKELIQEIR 615
>gi|414864985|tpg|DAA43542.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
Length = 299
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 103/187 (55%), Gaps = 36/187 (19%)
Query: 602 LDARLKKVKLLEAMGIFFERWSGG-EDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
+ AR+KK KLL+AMG FF R + + Q EVVR CG C S M+LK+ G MVGC
Sbjct: 7 IQARVKKAKLLDAMGTFFARSNRPINETQNPVEVVRPCGACNGSEMLLKRRASGEFMVGC 66
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPG---------------------------- 692
++PQCRN VWLPGS+SEAAVT C C PG
Sbjct: 67 RSYPQCRNVVWLPGSLSEAAVTNQVCPICAPGHLRVPFVDPDLCWLLFSFPIAIPLKLYG 126
Query: 693 -------PVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGP 745
PVY IQFKFR+ +IPP F+V+HLGC+GGCD+ L+ L+EI GSR A G
Sbjct: 127 NSTTPTGPVYKIQFKFRRRDIPPNFDVDHLGCVGGCDDILKDLMEISRFGSRSQAATPGQ 186
Query: 746 TASSNNG 752
++ G
Sbjct: 187 VLCTSCG 193
>gi|349575095|ref|ZP_08887019.1| DNA topoisomerase TopA [Neisseria shayeganii 871]
gi|348013308|gb|EGY52228.1| DNA topoisomerase TopA [Neisseria shayeganii 871]
Length = 764
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 142/584 (24%), Positives = 258/584 (44%), Gaps = 70/584 (11%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLR--RARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ + E+ ++ +R R F + + + +A+Q+
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLTEILKSKRGLKNIRPQRVVFHEVTQKAVQEAIQHPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ + DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 ELDIHLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEGTAT--FSWMRGHLFDYTSAVIIYEMCVQEP- 285
+ ER EI+A ES E+W+++ SHK + AT W L + A + V +
Sbjct: 179 ICERENEIRAFESREYWSVHLDSHKGRQKFATKLIQWRGEKLEQFALADEAAQQAVLDAL 238
Query: 286 ---TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------- 335
+A V +V +++ + P P +T +++ A R M+++ TM+ A+ L++
Sbjct: 239 AGHSAQVAEVVKKKATRKPAAPYTTSTMQQDAVRKLGMTTDRTMRTAQQLFEGVDVGQGA 298
Query: 336 -GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDD 392
G I+Y RT++ + S+ T + ++ +IG G Y L +A ++ +
Sbjct: 299 VGLITYMRTDSVTLSADALTEIRHYIENKIG----GDY----LPKSARAYKTKSKNAQE- 349
Query: 393 KAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
AH I PT S + S D +KLY+++ + +AC A T +I + +
Sbjct: 350 -AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMVEAKFDATSADIQLGDGI 408
Query: 449 FSTSGRVILAKNYLDVYRF------ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLL 502
F SG+V++ +L VY+ ES G +P V G+ L + T+PPP
Sbjct: 409 FRASGQVLVFDGFLSVYQEGQDEDEESEDGKKLPDLVAGETLPVDKLYGEQHFTQPPPRF 468
Query: 503 SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYE 562
+EA L+ +++ GIG +T IK L DR Y D RF PT+ G+ + + +
Sbjct: 469 NEATLVKALEEFGIGRPSTYASIIKTLKDREYVTVD-QRRFLPTDTGDIVNKFLTEHFEQ 527
Query: 563 LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERW 622
+ + +E + +++ G ++ V+ + ++ E GI ER
Sbjct: 528 YVDYDFTAKLEDQLDDIASGKRAWVPVMDKFWKGFHK----------QIAEKEGI--ER- 574
Query: 623 SGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
+ E+ C C + + +K + G + C +P+C
Sbjct: 575 ----AKITTQELDETCPKCGQHKLQIKFGKRGRF-IACSGYPEC 613
>gi|337747254|ref|YP_004641416.1| DNA topoisomerase III [Paenibacillus mucilaginosus KNP414]
gi|336298443|gb|AEI41546.1| DNA topoisomerase III [Paenibacillus mucilaginosus KNP414]
Length = 734
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 166/641 (25%), Positives = 276/641 (43%), Gaps = 98/641 (15%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVAK +A +L Q + + + G ++T GH
Sbjct: 28 MKSLVLAEKPSVAKEIARVLGCQQ---------------KHKHYMEGP--QYVVTWALGH 70
Query: 68 LMEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQW 117
L+ L ++D +Y+ W+ D P+ + +R+ P+ K + + A+R +
Sbjct: 71 LVTLAEPEEYDPKYKTWNLEDLPLLPSKMKLKVIRETTPQ-----FKAISQLAQRGDLKE 125
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL-----VDPN 172
L++ D REGE +A ++E+ R + +R S+ D+ I L DP
Sbjct: 126 LIIATDAGREGELVARWIMELVRWRKPY---KRLWISSQTDKAIRDGFAQLKPGPAYDP- 181
Query: 173 QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
+ AV R E D IG + TR ++T N L+ G Q PTL +++
Sbjct: 182 -LYRSAV-CRAEADWLIGLNITR------------ALTCKHNAQLAAGRVQTPTLAAMMD 227
Query: 233 RYWEIQAHESEEFWTINCSHKSEEGTATFSWMR-----GHLFDYTSAVIIYEMCVQEPTA 287
R +I++ ++++FW + +++ G+ W G LFD +A + E +A
Sbjct: 228 REAQIRSFQAKDFWML----RAQLGSFQALWRSQAHPDGRLFDKAAADTLLERLKTARSA 283
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETD 346
V+ ++ EK + P EL++ A++ +++ T V + LY Q ++YPRT++
Sbjct: 284 KVSALKVSEKSEPHPLAYDLTELQRDANKRLGFTAKQTSNVLQRLYEQHKLVTYPRTDSR 343
Query: 347 SFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFS 404
SS + L ++ +G P +G A+ LL + + H I PT
Sbjct: 344 YLSSDMVSTLPDRLKALLGTP-YGASAKGLLARPLPVTKRIVDDSKVSDHHA-IIPTDER 401
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV 464
D +LY+L+VR FL+ ET V ++IAGE F GR++ + + V
Sbjct: 402 PQLQLLGADERRLYDLIVRRFLSLFFPAFRYDETAVTLDIAGESFHAKGRIVKDQGWKAV 461
Query: 465 YRFESWGGLV---------------IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
Y S +P G + L+ G T+PP +EA LLS
Sbjct: 462 YDGSSAPSEADDDDAPEEEPSSLQSLPALQLGTELKDLRLSQQKGTTKPPGRYTEAGLLS 521
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K G+GT AT D I+KLL + NT PT G L+ EL P LR
Sbjct: 522 VMEKQGLGTPATRADIIEKLLSTDTIERRMNT-LQPTGKGVQLM--------ELVVPELR 572
Query: 570 S-----MMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
S E +++ ++ G +A +Q +A D +
Sbjct: 573 SSELTASWERELERIAKGQGDPDAFMAGIRKQTEAIVRDVK 613
>gi|325290135|ref|YP_004266316.1| DNA topoisomerase III [Syntrophobotulus glycolicus DSM 8271]
gi|324965536|gb|ADY56315.1| DNA topoisomerase III [Syntrophobotulus glycolicus DSM 8271]
Length = 725
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 194/759 (25%), Positives = 321/759 (42%), Gaps = 126/759 (16%)
Query: 11 LNVAEKPSVAKSVAGILS---KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
L +AEKPSV + +A +LS K+QG G L+T GH
Sbjct: 5 LVIAEKPSVGREIAKMLSCHKKDQGY------------------FTGP--KYLVTWALGH 44
Query: 68 LMEL----DFDERYRKWHSCDPADL---YHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL 120
L+ L +D+RY+ W D L V K + IK ++ L++
Sbjct: 45 LVTLADPEKYDQRYKTWKMDDLPMLPEQMELVVIKETSKQFSVIKNLMK--MPDLDELII 102
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FAD 177
D REGE +A +I + ++R S+ +R I + L ++ +A
Sbjct: 103 ATDAGREGELVARWII---KKAGWRKPIKRLWISSQTERAIKEGFAALKPAKEYDHLYAS 159
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
A + R + D IG + TR ++T + LS G Q PTL VVER +I
Sbjct: 160 A-ECRAQADWLIGLNVTR------------ALTCKFSAQLSAGRVQTPTLAMVVEREKQI 206
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWM-----RGHLFDYTSAVIIYEMCVQEPTATVTKV 292
++ +EFWTI K + +W + +FD + A + + + A +T++
Sbjct: 207 KSFVPKEFWTIQAFTKG----FSMTWHDKTNGQSRIFDQSKADQMIKK-ISGHDAEITEI 261
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSG 351
+++ K + PP EL++ A+R + S++ T V + LY+ ++YPRT DS
Sbjct: 262 KKESKKELPPLAYDLTELQRDANRKYGFSAKTTSSVMQQLYEYHKIVTYPRT--DSRYIT 319
Query: 352 TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHD--DKA----HPPIHPTKFSS 405
++ + E++ GPYAQ AA + +N + D++ H I PT+
Sbjct: 320 EDIVSTLPERLNSIAVGPYAQ----FAAKILKNKITTTKRFVDQSKVSDHHAIIPTEQPV 375
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
+ S + YK+Y+L+V+ FLA +S+P +T V+ +I GE+F G+++ + +VY
Sbjct: 376 HLQKLSNEEYKIYDLIVKRFLAVLSKPFEYEQTTVKADIRGELFEVKGKIVKQNGWKEVY 435
Query: 466 RFE-SW--------GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD---- 512
+ +W +P G++ + +G T+PP +EA LL+ M+
Sbjct: 436 QGTGNWEEEQEDEEREQTLPDLHKGERIPILEVKTKAGKTKPPARYTEATLLTAMEHPGK 495
Query: 513 -------------KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALV--MGYD 557
G+GT AT + I+KL FY ++ F PT+ G L+ + D
Sbjct: 496 NIENEKLREAVKQTGGLGTPATRAEIIEKLFSSFYLERNGKEIF-PTSKGLQLIELVPVD 554
Query: 558 DMGYEL---WKPNLRSMMESDMK--EVSVGNKSKADVLANCLQQMKACFLDARLKKVKLL 612
EL W+ L + + +K E G +S A L + + + F L + K
Sbjct: 555 LKSAELTAKWEQQLSEISKGKVKSTEFLNGIRSYARQLVSTVSENNQVFRHDNLTRNKCP 614
Query: 613 EAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWL 672
E G F + G + GE++ ICQ+ +K + C P C + L
Sbjct: 615 EC-GKFLLQVKGKK-----GELL----ICQDRECGYRKGLSVSSNARC---PNCHKKMDL 661
Query: 673 PGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFN 711
G E + T TC L F R+ E P N
Sbjct: 662 KGE-GENRIFTCTCGYREK----LASFTQRKSENPGKVN 695
>gi|83950057|ref|ZP_00958790.1| DNA topoisomerase I [Roseovarius nubinhibens ISM]
gi|83837956|gb|EAP77252.1| DNA topoisomerase I [Roseovarius nubinhibens ISM]
Length = 868
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 154/604 (25%), Positives = 256/604 (42%), Gaps = 65/604 (10%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR---AVNCHLVLRRAR 152
V D K K + + + L+L D DREGE I++ + E R + + R
Sbjct: 53 EVGNDSKKHIKAIADALKDDNALILATDPDREGEAISWHLEEALRKRKVIKKDTPVSRVV 112
Query: 153 FSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDD 212
F+A+ + +A+QN + + DA AR+ +D +G + + L
Sbjct: 113 FNAITKAAVTEAMQNPREIDTALVDAYLARRALDYLVGFNLSPVLWRKLPGAR------- 165
Query: 213 RNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRGHLF 269
S G Q L +VER EI+A + E+W++ + + +E A + G
Sbjct: 166 -----SAGRVQSVCLRLIVEREMEIEAFNAREYWSVKALLGTPRGQEFEARLVTLAGKKL 220
Query: 270 DY--TSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEH 324
D E+ VQ ++ +V V + + P P T L++ ASR F M +
Sbjct: 221 DKYDIENATQAELAVQAVSSRDLSVQSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQ 280
Query: 325 TMKVAEDLYQAGFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW 382
TM A+ LY+AG I+Y RT+ + + T + ++ G ++ P + R ++
Sbjct: 281 TMSAAQRLYEAGHITYMRTDGIDMAPEAVTAARDAITDRYGA-EYVPGSPR-------IY 332
Query: 383 RNPGSGGHDDKAHPPIHPTKFSSGESRWS---QDHYKLYELVVRHFLACVSQPAVGAETI 439
+N + AH I PT + + D KLY+L+ + LAC + A T
Sbjct: 333 KNKAKNAQE--AHECIRPTDMTRDAAALKLTDADQRKLYDLIWKRTLACQMESARLERTT 390
Query: 440 VEINIA-GEV-FSTSGRVILAKNYLDVYR------FESWGGLVIPTYVHGQQFIPTTLTL 491
VEI G+V +G+V+L +L VY +P G +T
Sbjct: 391 VEIGSQDGQVGLRATGQVVLFDGFLRVYEEGRDDDVTEDDDKRLPQIAQGDAMAKRDVTP 450
Query: 492 DSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEA 551
+ T+PPP +EA L+ M++ GIG +T + + +R Y KD N R P + G
Sbjct: 451 EQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQEREYVTKDKN-RLIPEDKGRI 509
Query: 552 LVMGYDD-----MGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-AR 605
+ + + +GYE + +E ++ VS GN VLA + + +
Sbjct: 510 VTIFLLNFFRKYVGYE-----FTADLEEELDVVSAGNADYKQVLARFWRDFSVAIAETSE 564
Query: 606 LKKVKLLEAM--GIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAF 663
L+ ++L+ + + + ED G R C +C E + LK SR G VGC +
Sbjct: 565 LRITEVLDVLDAALAPTLYPPRED----GSDPRICPLCGEGKLHLKTSRSGGF-VGCGNY 619
Query: 664 PQCR 667
P+CR
Sbjct: 620 PECR 623
>gi|251798806|ref|YP_003013537.1| DNA topoisomerase III [Paenibacillus sp. JDR-2]
gi|247546432|gb|ACT03451.1| DNA topoisomerase III [Paenibacillus sp. JDR-2]
Length = 719
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 173/628 (27%), Positives = 271/628 (43%), Gaps = 86/628 (13%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVAK +A +L G S NK Y + ++T GH
Sbjct: 1 MKSLVLAEKPSVAKEIARVL----------GCSSKNKSY-------MEGPDYVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQW--LVLW 121
L+ L D+D +Y+ W+ D L + V + K + + +R L++
Sbjct: 44 LVTLAEPEDYDPKYKTWNLED-LPLLPGKMNLKVMRETSHQYKAVAQLCKRPDIGELIIA 102
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FADA 178
D REGE +A ++E+ V+ +R S+ D+ I + L Q+ +A A
Sbjct: 103 TDAGREGELVARWIMEL---VHWRKPFKRLWISSQTDKAIKDGFKALKPGQQYNNLYASA 159
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
V R E D IG + TR ++T N L+ G Q PTLG +++R EI
Sbjct: 160 V-CRAEADWLIGLNVTR------------ALTVKYNAQLAAGRVQTPTLGALIDREKEIN 206
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMR-----GHLFDYTSAVIIYEMCVQEPTATVTKVR 293
+S+ +WT++ +E G W + G ++D + A + +Q +A V K+R
Sbjct: 207 QFQSQPYWTVS----AELGAFQALWRQNDNHDGRVWDRSEAEAVIAR-LQGKSAKVDKLR 261
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGT 352
+K + P EL++ A++ S++ T V + LY Q ++YPRT++ SS
Sbjct: 262 TTQKSEPHPQAFDLTELQREANKRLGFSAKMTSNVLQKLYEQHKLVTYPRTDSRYLSSDI 321
Query: 353 --NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGES 408
L G + E + + P A++LL G D K H I PT S
Sbjct: 322 VPTLKGRL-ESVAVGPYAPLARKLL---RGQLTVTKRFVDDSKVSDHHAIIPTDEYVNLS 377
Query: 409 RWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY--- 465
S D KLY+L+VR F+A P ET V + + + G+V + ++Y
Sbjct: 378 ALSNDERKLYDLIVRRFIALFYPPYTYDETSVVLTVGQDKLYAKGKVQKDIGWKELYGGS 437
Query: 466 --RF---------------ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLL 508
RF +S ++P V GQ L T PP +EA LL
Sbjct: 438 DARFTADEDDEEENGRGEDKSTPEQLLPELVQGQAVQVKQSRLKELRTLPPARYTEASLL 497
Query: 509 SCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNL 568
S M+K G+GT AT D I+KLL I+ R PT+ G+ L+ D EL P L
Sbjct: 498 SKMEKHGLGTPATRADIIEKLLS-TDTIERTQNRLVPTSKGKQLIELVVD---ELRSPEL 553
Query: 569 RSMMESDMKEVSVGNKSKADVLANCLQQ 596
+ E +++ ++ G +A +Q
Sbjct: 554 TAKWERELELIAHGQGDAKRFMAGIREQ 581
>gi|126699890|ref|YP_001088787.1| DNA topoisomerase III [Clostridium difficile 630]
gi|255101417|ref|ZP_05330394.1| DNA topoisomerase III [Clostridium difficile QCD-63q42]
gi|423092291|ref|ZP_17080095.1| DNA topoisomerase [Clostridium difficile 70-100-2010]
gi|115251327|emb|CAJ69159.1| DNA topoisomerase III [Clostridium difficile 630]
gi|357554249|gb|EHJ35974.1| DNA topoisomerase [Clostridium difficile 70-100-2010]
Length = 706
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 160/622 (25%), Positives = 276/622 (44%), Gaps = 75/622 (12%)
Query: 10 VLNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L +AEKPSV + +A +L SKN E N I G P +++ T GHL
Sbjct: 4 ILVLAEKPSVGRDIAKVLGSKN----------------EKNGYIEG-PKYVI-TWALGHL 45
Query: 69 MEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQWL 118
+ L + ERY+ W D P L ++K + T++ + R +
Sbjct: 46 VTLADPESYGERYKSWSLEDLPILPKHLKTVVIKKSGKQFN-----TVKSQMNRNDIDEI 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
V+ D REGE +A +IE + ++R S+ D+ I L ++ +
Sbjct: 101 VIATDAGREGELVARWIIEKSQ---VKKPIKRLWISSSTDKAIKDGFAKLKSGKEYENLY 157
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A+ AR E D IG + TR ++T N LS G Q PTL +++R
Sbjct: 158 YSAI-ARAEADWIIGINATR------------ALTTKYNAQLSCGRVQTPTLAMLLKREE 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT---VTKV 292
EI+ + +E++ + F W + T + E +++ +++V
Sbjct: 205 EIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESTLKKVKGVDIKISEV 264
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSG 351
+ K KY P EL++ A++ F S++ T+ + + LY+ ++YPRT++ +S
Sbjct: 265 NKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRYLTS- 323
Query: 352 TNLHGIVQEQIGHPDWGPYAQ---RLLDHAAGLWRNPGSGGHDDKA-HPPIHPTKFSSGE 407
++ G ++++I + Y++ RLL + + N + H I PT+
Sbjct: 324 -DIVGTLKDRIKAVNISDYSKICNRLL--KSNIIANKSFVDNSKVTDHHAIIPTEQKVFM 380
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL----AKNYLD 463
S +S K+Y LVV+ FLA +S P +T + + GE+F G ++ ++Y D
Sbjct: 381 SDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWKESYKD 440
Query: 464 VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
+ + + IP + L + SG T PPP L+E LL+ M+K G+GT AT
Sbjct: 441 IEDEDEYES--IPNVLEKDVLKVKGLKITSGKTNPPPYLNEGTLLTAMEKNGLGTVATRA 498
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
D I+KL + F ++ N T+ G L+ D + +L P L + E + ++S G
Sbjct: 499 DIIEKLFNSFL-MEKKNKDIYITSKGRQLL---DLVPVDLKTPELTASWEKKLLDISKGK 554
Query: 584 KSKADVLANCLQQMKACFLDAR 605
SK + + K L+ +
Sbjct: 555 LSKNTFINDMKDYSKDIVLEVK 576
>gi|390456337|ref|ZP_10241865.1| DNA topoisomerase III [Paenibacillus peoriae KCTC 3763]
Length = 711
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 163/619 (26%), Positives = 268/619 (43%), Gaps = 74/619 (11%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPSVA+ +A ++ RE Y I G ++T GH
Sbjct: 1 MKVLVLAEKPSVAREIARVMGS------REKHKSY---------IEGP--KYVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR-CQWLVLWL 122
L+ L D+D +Y W+ D L + K + E K + R+ L++
Sbjct: 44 LVGLAEPEDYDSKYASWNLEDLPILPKSSKLKVLRESNHQFKAVHQLMKRQDIGELIVAT 103
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---DAV 179
D REGE +A +I++ N RR S+ D+ I + L+ P Q F ++
Sbjct: 104 DAAREGELLARWIIQMA---NWKKPFRRLWISSQTDKAIKEGFAKLL-PGQQFDRLYESA 159
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
R E D IG + TR ++T N LS G Q PTLG ++ER EI
Sbjct: 160 RCRAEADWMIGLNVTR------------ALTCRYNAQLSAGRVQTPTLGMIMEREKEITQ 207
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
S+E+ T+ + +FD A + ++ TV V++ EK +
Sbjct: 208 FRSQEYDTLTADFGDFQAAWRAENGDSRMFDRAQAETLRRR-LEGAKGTVASVKKSEKNE 266
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHGIV 358
P EL++ A++ + S++ T V + LY Q ++YPRT++ +S ++ G +
Sbjct: 267 PHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLTS--DMVGTL 324
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRN--PGSGGHDDKA----HPPIHPTKFSSGESRWSQ 412
+E++ GPYA A L RN P + D + H I PT+ + ++ S
Sbjct: 325 KERLSSVAVGPYA----SLARPLLRNNLPITKRIVDDSKVTDHHAIIPTEQTLLLNQLSP 380
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY------- 465
+ KLY+L+ R F++ PA V + + E F G I + VY
Sbjct: 381 EERKLYDLIARRFISLFYPPARYDAVAVSVTVEQETFQVKGTTIKDSGWRAVYDGSHYEM 440
Query: 466 -------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
R + G+++P G + +G T PP +EA LL+ M+K G+GT
Sbjct: 441 DDEEAEDRENTEHGVILPELKKGDAVRIQRCLVRAGRTMPPKRYTEAALLAQMEKHGLGT 500
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
AT D I+KL+ + N PT G+ L+ + +L P L + E++++
Sbjct: 501 PATRADLIEKLVSSDTIERQGNV-MHPTGKGKQLI---ELAAPQLRTPELTARWEAELER 556
Query: 579 VSVGNKSKADVLANCLQQM 597
++ G + K + N ++ M
Sbjct: 557 IARG-QGKPEPFLNSIRAM 574
>gi|429766244|ref|ZP_19298518.1| DNA topoisomerase [Clostridium celatum DSM 1785]
gi|429185224|gb|EKY26213.1| DNA topoisomerase [Clostridium celatum DSM 1785]
Length = 730
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 160/624 (25%), Positives = 270/624 (43%), Gaps = 102/624 (16%)
Query: 10 VLNVAEKPSVAKSVAGIL--SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+L +AEKPSV + +A +L + N+G I EG S+Y ++T GH
Sbjct: 4 ILVLAEKPSVGRDLAKVLKCNSNKGSYI-EG-SKY-----------------IVTWAMGH 44
Query: 68 LMEL----DFDERYRKWH-SCDPADLYHAP--VRKHVPEDKKDIKKTLEEEARRCQWLVL 120
L+ L +D +Y++W P H V K + ++K+ + + +V+
Sbjct: 45 LVGLMDPEGYDNKYKEWKMDTLPMLPKHMKLVVLKKTGKQFNEVKRLMNRDD--VVEIVI 102
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FADA 178
D REGE +A +IE H L+R S+ D+ I +NL D + A
Sbjct: 103 ATDAGREGELVARWIIE---KAGVHKPLKRLWISSQTDKAILDGFKNLKDGKAYENLYRA 159
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
R E D +G + TR ++T N LS G Q PTL +V+R EI+
Sbjct: 160 AVCRAEADWLVGLNVTR------------ALTCKYNAQLSAGRVQSPTLAMIVQREEEIK 207
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMR----GHLFDYTSA-VIIYEMCVQEPTATVTKVR 293
+ + ++TI+ K +W+ +FD A I+Y+ ++ + +
Sbjct: 208 NFKPKTYYTISAKTKG----YNLAWVNKDNNSRIFDEEFANKIVYK--IKNAEGEIVNIS 261
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGT 352
K K+ P EL++ A++ F S++ T+ + + LY+ ++YPRT DS T
Sbjct: 262 SSNKKKFAPALYDLTELQRDANKIFGYSAKQTLNIMQRLYENHKILTYPRT--DSRYITT 319
Query: 353 NLHGIVQEQIGHPDWGPY---AQRLLDHAAGLWRNPGSGGHDDKA----HPPIHPTKFSS 405
++ + +++ G Y A LL G+ D + H I PT+
Sbjct: 320 DIVATIPDRLKAIAIGEYRITANELLKTKVN-----GNKSFVDNSKVSDHHAIIPTEEKP 374
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
S + + K+Y+LVV+ FL+ + P +T +E ++ E F G+VIL+K + +Y
Sbjct: 375 NLSNLTSEERKIYDLVVKRFLSVLLPPFEYTQTTIEGSVENERFIAKGKVILSKGWKKLY 434
Query: 466 RFESWGGL-------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK----- 513
L V+P G +F ++++ G T+PP +E LLS M+
Sbjct: 435 DKLEEENLEDDIREQVLPKVNKGDRFTIENVSINKGTTKPPARFNEGTLLSAMENPHKYI 494
Query: 514 -------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
G+GT AT D I+KL + F I+ PT+ G L+ + +
Sbjct: 495 NVGKDAAKTLGETGGLGTVATRADIIEKLFNSF-VIEKRGKEIIPTSKGNQLI---ELVP 550
Query: 561 YELWKPNLRSMMESDMKEVSVGNK 584
EL P L + E + E++ G +
Sbjct: 551 AELKSPILTARWERQLDEIAKGKR 574
>gi|238022607|ref|ZP_04603033.1| hypothetical protein GCWU000324_02516 [Kingella oralis ATCC 51147]
gi|237866047|gb|EEP67181.1| hypothetical protein GCWU000324_02516 [Kingella oralis ATCC 51147]
Length = 774
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 171/721 (23%), Positives = 297/721 (41%), Gaps = 131/721 (18%)
Query: 66 GHLMELDFDERYRKWHSCDPAD----LYHAPVR--KHVPEDKKDIKKTLEEEARRCQWLV 119
GH+ +L +K + +P D Y P + KHV E + + A++ +
Sbjct: 32 GHVRDL-----IKKNGAVNPEDNFAMKYEIPAKSAKHVDE--------IVKAAKQADTIY 78
Query: 120 LWLDCDREGENIAFEVIEVCRA----VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWF 175
L D DREGE I++ + E+ ++ N L+R F + + + +A+Q+ +
Sbjct: 79 LATDPDREGEAISWHIAEILKSKRGMANIGDKLQRVVFHEVTPKGVQEAIQHPRGLDINL 138
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
DA AR+ +D +G + + +L K LS G Q P L + ER
Sbjct: 139 VDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRLICEREN 186
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFS-----WMRGHLFDYT------SAVIIYEMCVQE 284
EI+A E++E+W+I+ S +G FS W L ++ A I+ +Q
Sbjct: 187 EIRAFETQEYWSIHMD--SHKGRTKFSAKLTQWQNAKLEQFSLPNEASQAAIL--TALQG 242
Query: 285 PTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA--------G 336
A V++V +++ + P P +T +++ A R +++ TM+ A+ L++ G
Sbjct: 243 KEARVSEVIKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGIDVGQGAVG 302
Query: 337 FISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA 394
I+Y RT++ + S T + + +IG D+ P + R+ + + +A
Sbjct: 303 LITYMRTDSVTLSQDAVTEIRHYIDNKIG-ADYLPNSPRVYKTKSK---------NAQEA 352
Query: 395 HPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450
H I PT S + S D +KLY+++ + +AC A T V+I + +F
Sbjct: 353 HEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMVEAKFDATTVDIAVGDGIFR 412
Query: 451 TSGRVILAKNYLDVYR-------FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLS 503
+G+V++ +L VY+ +P G L + T+PPP +
Sbjct: 413 ATGQVLVFAGFLSVYQEGADEDDNADENNKKLPEMTVGDALPVDNLYGEQHFTQPPPRFN 472
Query: 504 EADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYEL 563
EA L+ +++ GIG +T IK L DR Y I + RF PT+ GE + + +
Sbjct: 473 EATLVKALEEYGIGRPSTYASIIKTLKDREYVIVE-QRRFLPTDTGEVVNKFLTEHFQQY 531
Query: 564 WKPNLRSMMESDMKEVSVGNKSKADVLANCLQ------QMKACFLDARLKKVKLLEA--- 614
+ + +E + E++ G + V+ Q + K A+ +L E
Sbjct: 532 VDYDFTAKLEDQLDEIAGGKRQWIPVMDTFWQGFHKQVEEKEGIERAKFTTEELDETCPK 591
Query: 615 ------------MGIF----------FERWSGGEDQQAAGEVV-----------RQCGIC 641
G F + R +QAA + RQC C
Sbjct: 592 CGNHKLQIKFGRAGRFIACAGYPECDYTRNVNETAEQAAARIAQDEAMQAELNGRQCPQC 651
Query: 642 QESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKF 701
+V K SR G +GC +P+C+ L + T TC C G +L++ K
Sbjct: 652 -SGQLVYKNSRTGKKFIGCANYPKCKYVEPL----EKPKDTGVTCPQCGKG--HLVERKS 704
Query: 702 R 702
R
Sbjct: 705 R 705
>gi|268687542|ref|ZP_06154404.1| DNA topoisomerase I [Neisseria gonorrhoeae SK-93-1035]
gi|268627826|gb|EEZ60226.1| DNA topoisomerase I [Neisseria gonorrhoeae SK-93-1035]
Length = 768
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 148/599 (24%), Positives = 262/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV N
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVANPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPDEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++++ P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRIRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY ES G +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDGKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRRWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|226227915|ref|YP_002762021.1| DNA topoisomerase I [Gemmatimonas aurantiaca T-27]
gi|226091106|dbj|BAH39551.1| DNA topoisomerase I [Gemmatimonas aurantiaca T-27]
Length = 816
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 159/649 (24%), Positives = 272/649 (41%), Gaps = 95/649 (14%)
Query: 99 EDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV---LRRARFSA 155
E K+DI L++ A+ + + + D DREGE I + V + H V +RR F
Sbjct: 105 EGKEDILTDLKKVAKGAREIFIATDPDREGEAIGWHVEQYFTQPKRHAVSAPIRRVMFHE 164
Query: 156 LIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNL 215
+ +H+++ +D + +A AR+ +D +G + +L K
Sbjct: 165 ITKDAVHKSMAKPMDIDNKKVEAQQARRVLDRLVG---YKASPVLWKTVKKG-------- 213
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI--NCSHKSEEGTATFSWMRG---HLFD 270
LS G Q L +VER EI+A E+W+I + + TA + G + +
Sbjct: 214 -LSAGRVQTVALRLIVEREREIRAFTPVEYWSIAADLQKGQQPFTAKLHQLDGKKPEIGN 272
Query: 271 YTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAE 330
T A I VT+V+++E+ K P P +T L++ A++ S+ TM++A+
Sbjct: 273 GTEAERIIADLAGRKEFVVTEVKRRERRKNPAAPFTTSTLQQEAAKKLGFGSKRTMRLAQ 332
Query: 331 DLYQA---------GFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAA 379
DLY+ G I+Y RT++ S + + ++ Q G P Q
Sbjct: 333 DLYEGIDVGIDGATGLITYMRTDSTRVSEDAANSARESLRAQFGDDFLAPAPQ------- 385
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKFSSGESR----WSQDHYKLYELVVRHFLACVSQPAVG 435
L+ P + AH + PT S + + D +KLY+L+ + F+A PAV
Sbjct: 386 -LY--PSGKANAQDAHEGVRPTDPSRRPEQVQKFLTADQFKLYQLIWQRFMASQMAPAVF 442
Query: 436 AETIVEINIAGEV--------FSTSGRVILAKNYLDVYRFESWGG--------LVIPTYV 479
T V+ NI +V F +G V+ + +L +YR G +P
Sbjct: 443 DTTTVDFNIPIKVADAERNYLFRATGSVVKFQGFLALYREAREEGDAKALEDEQALPVLE 502
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
++ +T T PPP SEA L+ +++AGIG +T I L++R Y +
Sbjct: 503 VDERVPVKAITPTQHFTEPPPRFSEASLVKELERAGIGRPSTYASIISVLVERRY-VSLE 561
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN----KSKADVLANCLQ 595
RF PT++GE + +++ + ME ++ +++ G ++ D +
Sbjct: 562 QRRFFPTSLGETVEKVMVKKFPDVFNVGFTAQMEEELDKIAEGEIDWVRALGDFWTPFQR 621
Query: 596 QMKACFLDARLKKVKLLEAM---------------GIFFERWSGGEDQQAAGEVVRQCG- 639
+ LDA + + L A+ G FF + E+ A + R
Sbjct: 622 TLNDNDLDALIGEAYDLSALETERCPDCGGKLVAKGGFFGPFVACENHPKACKYTRPIKG 681
Query: 640 ----------ICQE--SNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV 676
+CQE + MV++ R G+ + GC FP+CR +P V
Sbjct: 682 EKKPAELTNYMCQECGAPMVIRHGRSGDFL-GCSKFPKCRGTRSMPTGV 729
>gi|164688548|ref|ZP_02212576.1| hypothetical protein CLOBAR_02193 [Clostridium bartlettii DSM
16795]
gi|164602961|gb|EDQ96426.1| DNA topoisomerase I [Clostridium bartlettii DSM 16795]
Length = 692
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 149/609 (24%), Positives = 250/609 (41%), Gaps = 75/609 (12%)
Query: 118 LVLWLDCDREGENIAFE---VIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW 174
+ L D DREGE I++ ++ + C R F+ + I +A+++ + N
Sbjct: 78 VYLATDPDREGEAISWHLSYILNIDEEEKC-----RIEFNEITKDAIKKAIKSPRNINLN 132
Query: 175 FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
DA AR+ +D +G + ++ LS G Q T + ER
Sbjct: 133 LVDAQQARRVLDRLLGYQISPILWQKVRKG------------LSAGRVQSVTTKLICERE 180
Query: 235 WEIQAHESEEFWTIN--CSHKSEEG-TATFSWMRGHLFDYTSAVIIYEM--CVQEPTATV 289
EI+A E +E+W+I S+K E T F + + + E+ ++ + V
Sbjct: 181 EEIKAFEPKEYWSIELIASNKEENNLTLKFYGKDNEKIELENEEQVKEILKTIENGSLVV 240
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ---------AGFISY 340
TK+ + + K P P +T L++ A+ +++ TM VA++LY+ G ISY
Sbjct: 241 TKIESRSRRKSAPKPYTTSVLQQDAANKLYFTTKKTMMVAQELYEGIDVKGEGTVGLISY 300
Query: 341 PRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
RT++ S + G + E IG + DHA D AH I
Sbjct: 301 IRTDSKRISEEAREKAKGYIIESIGENYYK-------DHAKDSKGKKEKKVQD--AHEAI 351
Query: 399 HPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGR 454
PT S + S++ YKLY L+ R F+A + +V VE I +F +G
Sbjct: 352 RPTSVDRTPDSIKDSLSKEQYKLYNLIWRRFVASQMEDSVFDVLNVECKIEDLIFKATGS 411
Query: 455 VILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+ Y +Y F ++P+ G+ T PPP +EA L+ +++
Sbjct: 412 KLKFDGYTKIYNFTEREDKILPSLDEGEILKIQEYNPQQHFTSPPPRYTEASLVKTLEEL 471
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
GIG +T I +L+R Y KD + PT +G + D+ + + + + MES
Sbjct: 472 GIGRPSTYAPTITTILNREYVEKDGAS-LVPTELGIIVTKILDENFQKFMEVDFTADMES 530
Query: 575 DMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEV 634
+ ++ GN V+ L EA+ + E+ + E+
Sbjct: 531 QLDQIEEGNVEWKKVVEEFYSP--------------LAEAIRVAIEKIEKVNMDEETDEI 576
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
CG SNMV+K R G M C +P+C+N + VS+ V C C G +
Sbjct: 577 CELCG----SNMVIKYGRFGKFM-ACKNYPECKNTKPI---VSKIGV---KCPKCKEGDI 625
Query: 695 YLIQFKFRQ 703
+ + K ++
Sbjct: 626 IMRKSKKKK 634
>gi|379721098|ref|YP_005313229.1| DNA topoisomerase III [Paenibacillus mucilaginosus 3016]
gi|386723782|ref|YP_006190108.1| DNA topoisomerase III [Paenibacillus mucilaginosus K02]
gi|378569770|gb|AFC30080.1| DNA topoisomerase III [Paenibacillus mucilaginosus 3016]
gi|384090907|gb|AFH62343.1| DNA topoisomerase III [Paenibacillus mucilaginosus K02]
Length = 723
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 168/643 (26%), Positives = 278/643 (43%), Gaps = 102/643 (15%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVAK +A +L Q + + + G ++T GH
Sbjct: 1 MKSLVLAEKPSVAKEIARVLGCQQ---------------KHKHYMEGP--QYVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQW 117
L+ L ++D +Y+ W+ D P+ + +R+ P+ K + + A+R +
Sbjct: 44 LVTLAEPEEYDLKYKTWNLEDLPLLPSKMKLKVIRETTPQ-----FKAISQLAQRGDLKE 98
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL-----VDPN 172
L++ D REGE +A ++E+ R + +R S+ D+ I L DP
Sbjct: 99 LIIATDAGREGELVARWIMELVRWRKPY---KRLWISSQTDKAIRDGFAQLKPGPAYDP- 154
Query: 173 QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
+ AV R E D IG + TR ++T N L+ G Q PTL +++
Sbjct: 155 -LYRSAV-CRAEADWLIGLNITR------------ALTCKHNAQLAAGRVQTPTLAAMMD 200
Query: 233 RYWEIQAHESEEFWTINCSHKSEEGTATFSWMR-----GHLFDYTSAVIIYEMCVQEPTA 287
R +I++ ++++FW + +++ G+ W G LFD +A + E +A
Sbjct: 201 REAQIRSFQAKDFWML----RAQLGSFQALWRSQAHPDGRLFDKAAADTLLERLKTARSA 256
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETD 346
V+ ++ EK + P EL++ A++ +++ T V + LY Q ++YPRT++
Sbjct: 257 KVSALKVSEKSEPHPLAYDLTELQRDANKRLGFTAKQTSNVLQRLYEQHKLVTYPRTDSR 316
Query: 347 SFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTK 402
SS + L ++ +G P +G A+ LL + + D K H I PT
Sbjct: 317 YLSSDMVSTLPDRLKALLGTP-YGASAKGLLARPLPVTKRIVD---DSKVSDHHAIIPTD 372
Query: 403 FSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462
D +LY+L+VR FL+ ET V ++IAGE F GR++ + +
Sbjct: 373 ERPQLQLLGADERRLYDLIVRRFLSLFFPAFRYDETAVTLDIAGESFHAKGRIVKDQGWK 432
Query: 463 DVYRFESWGGLV---------------IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
VY S +P G + L+ G T+PP +EA L
Sbjct: 433 AVYDGSSAPSEADDDDAPEEEPSSLQSLPALQLGTELKDLRLSQQKGTTKPPGRYTEAGL 492
Query: 508 LSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPN 567
LS M+K G+GT AT D I+KLL + NT PT G L+ EL P
Sbjct: 493 LSVMEKQGLGTPATRADIIEKLLSTDTIERRMNT-LQPTGKGVQLM--------ELVVPE 543
Query: 568 LRS-----MMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
LRS E +++ ++ G +A +Q +A D +
Sbjct: 544 LRSSELTASWERELERIAKGQGDPDAFMAGIRKQTEAIVRDVK 586
>gi|404379582|ref|ZP_10984638.1| DNA topoisomerase I [Simonsiella muelleri ATCC 29453]
gi|294482847|gb|EFG30535.1| DNA topoisomerase I [Simonsiella muelleri ATCC 29453]
Length = 774
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 146/591 (24%), Positives = 258/591 (43%), Gaps = 81/591 (13%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAV----NCHLVLRRARFSALIDREIHQAVQN 167
A+ + L D DREGE I++ + E+ ++ N L+R F + + + A+Q+
Sbjct: 71 AKEADTIYLATDPDREGEAISWHIAEILKSKRGMKNIGEKLQRVVFHEVTPKGVQAAIQH 130
Query: 168 LVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTL 227
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 PRGLDMDLVDAQQARRALDYLVGFNLS---PLLWKKIRYG---------LSAGRVQSPAL 178
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEGTATFS-----WMRGHLFDYT------SAVI 276
+ ER EI+A E++E+W+I+ S +G FS W L ++ A I
Sbjct: 179 RLICERENEIRAFETQEYWSIHLD--SHKGRTKFSAKLTHWQNKKLEQFSLPDEASQANI 236
Query: 277 IYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA- 335
+ ++ Q TA V V +++ + P P +T +++ A R +++ TM+ A+ L++
Sbjct: 237 LAQL--QGKTAQVADVTKKKATRKPAAPYTTSTMQQDAVRKLGFTTDRTMRTAQQLFEGI 294
Query: 336 -------GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPG 386
G I+Y RT++ + S T + ++ +IG L +A +++
Sbjct: 295 DVGQGAVGLITYMRTDSVTLSQDALTEIRHYIENKIGAD--------FLPSSAKIYKTKS 346
Query: 387 SGGHDDKAHPPIHPTK-FSSGESR---WSQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
+ AH I PT + S ES S D +KLY+++ + +AC A T V+I
Sbjct: 347 KNAQE--AHEAIRPTSVYRSPESVKPFLSPDQFKLYQMIWQRTVACQMVDAKFDATTVDI 404
Query: 443 NIAGEVFSTSGRVILAKNYLDVYR-------FESWGGLVIPTYVHGQQFIPTTLTLDSGV 495
N+ VF +G+V+ +L VY+ +P G + L +
Sbjct: 405 NVGEGVFRATGQVLTFAGFLSVYQEGADEDDNSEEDNKKLPEMSVGDELPVDKLYGEQHF 464
Query: 496 TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMG 555
T+PPP +EA L+ +++ GIG +T IK L DR Y I + RF PT+ GE +
Sbjct: 465 TQPPPRFNEATLVKALEEFGIGRPSTYASIIKTLKDREYVIVE-QRRFQPTDTGEIVNKF 523
Query: 556 YDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAM 615
+ + + + +E+ + E++ G + V+ F K+V +E
Sbjct: 524 LTEHFEQYVDYDFTAKLENQLDEIANGKREWIPVMEK--------FWKGFHKQV--VEKE 573
Query: 616 GIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
GI +++ Q E+ +CG + +K R G + C +P+C
Sbjct: 574 GIERAKFT----TQELDEICPECG---NHKLQIKFGRAGRF-IACAGYPEC 616
>gi|414155234|ref|ZP_11411549.1| DNA topoisomerase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411453284|emb|CCO09453.1| DNA topoisomerase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 709
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 149/600 (24%), Positives = 252/600 (42%), Gaps = 83/600 (13%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAF---EVIEVCRAVNCHLVLRRARFSALI 157
K DI K L ++ ++L D DREGE IA+ +++++ C R F+ +
Sbjct: 60 KGDIIKDLRAAVKKADRVLLASDPDREGEAIAWHLTKLLDIDENSPC-----RIEFNEIT 114
Query: 158 DREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
+ I QAVQ + +A AR+ +D +G + + +K L
Sbjct: 115 PKAIEQAVQQPRPIDLDRVNAQQARRILDRLVGYNLSPLLWRKVKKG------------L 162
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII 277
S G Q + + +R EI+A EE+W++ + G + F + H + I
Sbjct: 163 SAGRVQSVAVRLICDREEEIRAFVPEEYWSLTAKF-VKSGKSPFE-AKLHKYRNQKIHIA 220
Query: 278 YEMCVQEPTAT-------VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAE 330
+++ A V V ++EKL++P P +T L++ ASR +S TM VA+
Sbjct: 221 NREAMEQILADLKGASFRVNSVSRKEKLRHPAAPFTTSSLQQEASRKLNFTSRKTMVVAQ 280
Query: 331 DLYQA---------GFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDHAA 379
LY+ G ++Y RT++ S + E+ G P + P R AA
Sbjct: 281 QLYEGLELGKEGPVGLVTYIRTDSTRVSETAVQEARKFINERFG-PAYLPQQPR---QAA 336
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVG 435
G G AH I PT S + + D YKLY+L+ FLA PA+
Sbjct: 337 G-------KGKVQDAHEAIRPTSVYRDPESVKGFLTNDQYKLYKLIWSRFLASQMAPALI 389
Query: 436 AETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-----VIPTYVHGQQFIPTTLT 490
T ++I VF +G ++ ++ VY + G+ ++P G + TLT
Sbjct: 390 DTTGIDIAAGDYVFRAAGSIVKFPGFMQVYIEGNDDGVKEEEKLLPELAEGDKLQAKTLT 449
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
T+PPP ++A L+ +++ GIG +T ++ + R Y +++ N +F PT +G
Sbjct: 450 PKQHFTQPPPRYTDATLVKVLEEKGIGRPSTYAPIVETIQKRGYVVRE-NKQFYPTELGM 508
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA--RLKK 608
+V E+ + ME + ++ G + + VL + A ++ K
Sbjct: 509 IVVELLKQYFPEIINIEFTAEMEEKLDRIAEGEQQWSGVLQEFYRPFVKTLATAEEQIGK 568
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
V++ + + E+ QCG MV+K R G + C FP CRN
Sbjct: 569 VEVAD---------------EVTDEICEQCG----RQMVIKLGRYGKFL-ACPGFPACRN 608
>gi|84685605|ref|ZP_01013502.1| DNA topoisomerase I [Maritimibacter alkaliphilus HTCC2654]
gi|84666271|gb|EAQ12744.1| DNA topoisomerase I [Rhodobacterales bacterium HTCC2654]
Length = 846
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 150/603 (24%), Positives = 256/603 (42%), Gaps = 63/603 (10%)
Query: 94 RKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR---AVNCHLVLRR 150
RKHV K I L+E+ L+L D DREGE I++ + E R A+ + R
Sbjct: 59 RKHV----KAIADALKEDNN----LILATDPDREGEAISWHLEEALRKRKAIKKDTPVSR 110
Query: 151 ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT 210
F+A+ + +A++N D + +A AR+ +D +G + + L
Sbjct: 111 VVFNAITKSAVTEAMKNPRDVDGDLVEAYLARRALDYLVGFNLSPVLWRKLPGAR----- 165
Query: 211 DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT------ATFSWM 264
S G Q L +VER EI+A E+W++ ++ G +++
Sbjct: 166 -------SAGRVQSVCLRLIVEREMEIEAFNPREYWSVKALLQTPRGQQFEARLVSYAGK 218
Query: 265 RGHLFDYTSA--VIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSS 322
+ +D + + ++ +V V + + P P T L++ ASR F +
Sbjct: 219 KLDRYDLENEQQAGLAVAAIEARELSVLSVEAKPASRNPSAPFMTSTLQQEASRKFGFGA 278
Query: 323 EHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW 382
TM A+ LY+AG+I+Y R TD +++I Y + + ++
Sbjct: 279 RQTMSTAQRLYEAGYITYMR--TDGIDMAPEAVTAARDEIAT----RYGKDYVPAEPRVY 332
Query: 383 RNPGSGGHDDKAHPPIHPTKFSSGES-----RWSQDHYKLYELVVRHFLACVSQPAVGAE 437
+N + AH I PT+ S S R D KLY+L+ + +AC A
Sbjct: 333 KNKAKNAQE--AHECIRPTEMSRDPSANDIARLEPDQRKLYDLIWKRTIACQMTGARLER 390
Query: 438 TIVEINIA-GEV-FSTSGRVILAKNYLDVYR--------FESWGGLVIPTYVHGQQFIPT 487
T VEI + G+V +G+V+L +L VY + +P G
Sbjct: 391 TAVEIGSSDGQVGLRATGQVVLFDGFLKVYEEGRDDVVIDDEDDANRLPQMTEGDATKKD 450
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
++T + T+PPP +EA L+ M++ GIG +T + + DR Y KD R P +
Sbjct: 451 SVTPEQHFTQPPPRYTEATLVKKMEELGIGRPSTYASIVTTIQDREYVRKDKG-RLIPED 509
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARL 606
G + M + + + +E ++ +VS G +LA + A + + L
Sbjct: 510 KGRIVTMFLLNFFRQYVGYEFTADLEEELDKVSAGEIEYKKLLARFWRDFSAAIAETSEL 569
Query: 607 KKVKLLEAMGIFFER--WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
+ ++L+ + E+ + ED G R+C +C ++ LK SR G VGC +P
Sbjct: 570 RISEVLDKLDKALEKQLYPPRED----GSDPRKCPLCGTGDLHLKTSRSGGF-VGCSNYP 624
Query: 665 QCR 667
+CR
Sbjct: 625 ECR 627
>gi|323701839|ref|ZP_08113509.1| DNA topoisomerase I [Desulfotomaculum nigrificans DSM 574]
gi|323533143|gb|EGB23012.1| DNA topoisomerase I [Desulfotomaculum nigrificans DSM 574]
Length = 713
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 161/694 (23%), Positives = 281/694 (40%), Gaps = 122/694 (17%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM--LMTSVTG 66
L + E P+ AKS+ L +N Y+++ H+ L S G
Sbjct: 8 KTLVIVESPAKAKSIGKYLGRN-------------------YTVKASMGHLRDLPKSQFG 48
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+E +F +Y K +I K L ++ ++L D DR
Sbjct: 49 VDVESNFSPKYIAIRG------------------KGEIIKELRAAVKKADRILLASDPDR 90
Query: 127 EGENIAF---EVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE IA+ +++++ NC R F+ + + I QAV++ + +A AR+
Sbjct: 91 EGEAIAWHLSKLLDIDENSNC-----RIEFNEITKQAIQQAVKHPRPIDIDRVNAQQARR 145
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+D +G + + +K LS G Q + +V+R EI+A E
Sbjct: 146 ILDRLVGYNLSPLLWRKVKKG------------LSAGRVQSVAVRLIVDREEEIKAFIPE 193
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYE---------MCVQEPTATVTKVRQ 294
E+W++ S+ +TF L+ Y + I ++ + V V +
Sbjct: 194 EYWSLTAKF-SKTAKSTFE---AKLYKYQNKKITIPNQEAMDKILADLKGVSYVVASVTR 249
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA---------GFISYPRTET 345
+EKL+ P P +T L++ ASR ++ TM VA+ LY+ G ++Y RT++
Sbjct: 250 KEKLRNPAPPFTTSSLQQEASRKLNFTARKTMAVAQQLYEGLELGKEGPVGLVTYIRTDS 309
Query: 346 DSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF 403
S + E+ G P + P R + G AH I PT
Sbjct: 310 TRVSKTAVEEAKKFILERFG-PAYVPKES----------RQTVAKGKVQDAHEAIRPTSV 358
Query: 404 ----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAK 459
+ + + D YKLY+L+ FLA AV T ++I +F +G ++
Sbjct: 359 ERDPETIKEFLTNDQYKLYKLIWSRFLASQMAAAVMDTTSMDIEGGDYLFRATGSIVKFP 418
Query: 460 NYLDVYRFESWGGL-----VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
++ VY E+ G ++P G + +LT T+PPP ++A L+ +++
Sbjct: 419 GFMQVYIEENDDGTKEEEKLLPELAQGDKVEAKSLTPKQHFTQPPPRYTDATLVKVLEEK 478
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
GIG +T ++ + R Y +++ N +F PT +G +V + ++ + ME
Sbjct: 479 GIGRPSTYAPIVETIQKRGYVVRE-NKQFYPTELGIIVVDLLKNYFPDIINIEFTAEMEE 537
Query: 575 DMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEV 634
+ +++ G++ +VL + + A K K+ A + E+
Sbjct: 538 KLDQIAEGDQDWVNVLKDFYGPFQQTLATAEEKIGKVQVA-------------DEVTDEI 584
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
QCG NMV+K R G + C FP CRN
Sbjct: 585 CEQCG----KNMVIKMGRFGKFL-ACPGFPDCRN 613
>gi|255093253|ref|ZP_05322731.1| DNA topoisomerase III [Clostridium difficile CIP 107932]
Length = 678
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 160/625 (25%), Positives = 276/625 (44%), Gaps = 81/625 (12%)
Query: 10 VLNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L +AEKPSV + +A +L SKN E N I G P +++ T GHL
Sbjct: 4 ILVLAEKPSVGRDIAKVLGSKN----------------EKNGYIEG-PKYVI-TWALGHL 45
Query: 69 MEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQWL 118
+ L + ERY+ W D P L ++K + T++ + R +
Sbjct: 46 VTLADPESYGERYKSWSLEDLPILPKHLKTVVIKKSGKQFN-----TVKSQMNRNDIDEI 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
V+ D REGE +A +IE + ++R S+ D+ I L ++ +
Sbjct: 101 VIATDAGREGELVARWIIEKSQVKKP---IKRLWISSSTDKAIKDGFAKLRSGKEYENLY 157
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A+ AR E D IG + TR ++T N LS G Q PTL +++R
Sbjct: 158 YSAI-ARAEADWIIGINATR------------ALTTKYNAQLSCGRVQTPTLAMLLKREE 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT---VTKV 292
EI+ + +E++ + F W + T + E +++ +++V
Sbjct: 205 EIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESILKKVKGVDIKISEV 264
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSG 351
+ K KY P EL++ A++ F S++ T+ + + LY+ ++YPRT++ +S
Sbjct: 265 NKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRYLTS- 323
Query: 352 TNLHGIVQEQIGHPDWGPYAQ---RLLDHAAGLWRNPGSGGHDDKA-HPPIHPTKFSSGE 407
++ G ++++I + Y++ +LL + + N + H I PT+
Sbjct: 324 -DIVGTLKDRIKAVNISDYSKICNKLL--KSNIIANKSFVDNSKVTDHHAIIPTEQKVFM 380
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR- 466
S +S K+Y LVV+ FLA +S P +T + + GE+F G ++ + + Y+
Sbjct: 381 SDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWKESYKD 440
Query: 467 ------FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDA 520
+ES IP + L + SG T PPP L+E LL+ M+K G+GT A
Sbjct: 441 IEDEDEYES-----IPNVLEKDVLKVKGLKITSGKTNPPPYLNEGTLLTAMEKNGLGTVA 495
Query: 521 TMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVS 580
T D I+KL + F ++ N T+ G L+ D + +L P L + E + ++S
Sbjct: 496 TRADIIEKLFNSFL-MEKKNKEIYITSKGRQLL---DLVPVDLKTPELTASWEKKLLDIS 551
Query: 581 VGNKSKADVLANCLQQMKACFLDAR 605
G SK + + K L+ +
Sbjct: 552 KGKLSKNTFINDMKDYSKDIVLEVK 576
>gi|305663582|ref|YP_003859870.1| DNA topoisomerase I [Ignisphaera aggregans DSM 17230]
gi|304378151|gb|ADM27990.1| DNA topoisomerase I [Ignisphaera aggregans DSM 17230]
Length = 672
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 158/645 (24%), Positives = 278/645 (43%), Gaps = 50/645 (7%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKP A+ +A L + RI G + + +RG ++ GHL
Sbjct: 7 ILVIAEKPKSAEKIAYALGNPKKYRI-NGVPVW-------FVMRGT-SRFVIAPAAGHLY 57
Query: 70 ELD--------FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLW 121
L FD ++ + +P ++ RK++ L A+ + +
Sbjct: 58 TLHTESKGFPVFDYKWVPKYIVEPESIF---TRKYL--------NVLSMLAKNAKEYINA 106
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
D D EG I + +I+ + +RA+FS+L EI +A NL+ + +A
Sbjct: 107 CDYDIEGSLIGYMIIKNIGDIKRS---KRAKFSSLTASEIVRAFNNLLPLDYNMIEAGYC 163
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R +D G + +R ML+ + SV +++ +LS G Q PTL +VV + + H
Sbjct: 164 RHILDWLWGINVSR---MLMSIYR--SVFNEKR-ILSAGRVQSPTLSYVVNIDLQRKTHV 217
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+ + + + + A E ++P ATV + +++ P
Sbjct: 218 PVPYAYPSIKIFIDNKIFKLIPIDSPFNSLSDAKEYLENIKRDPRATVLDIIVRDERIEP 277
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P+P + +L+ A R + + T K+AEDLY ISYPRT + N I+++
Sbjct: 278 PHPFNLPDLQSEAHRIYGFTPYKTQKLAEDLYLEALISYPRTNSQKLPPTLNNREILEKL 337
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
+ + + LL G+ R P +G +D AHP I+PT + + S+DH KLY+L+
Sbjct: 338 SQNIVYRTLVKTLLAETRGILR-PNNGPKEDPAHPAIYPTGEGTLKG-LSKDHIKLYDLI 395
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG--LVIPTYV 479
VR +LA + PAV +E + G + S ++ ++ +L Y + + G + +
Sbjct: 396 VRRYLATFANPAVVQYVRIEFIVHGRRYYLSTNIVRSRGWLQYYPYIHFNGEEISLKLLR 455
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
G Q + T+PP L S+ L+ M++ GIGT+AT + ++ L R Y
Sbjct: 456 KGLQIPIHEAKIVIHFTKPPHLPSKISLVKWMEEKGIGTEATRAEIVETLFKRGYLYMRG 515
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
+ +G + D EL L E + + + K+K D + ++M
Sbjct: 516 RGS-GVSELGILISFLLKDYVEELISVELTRKFEERLNMI-LNMKAKCDDIVEEAKEMLL 573
Query: 600 CFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQES 644
+++ +VK L+ + E E G R+C IC+ S
Sbjct: 574 KYIN----RVKSLDIQTLRAEISKYIEMSDNNG---RRCMICKRS 611
>gi|255656257|ref|ZP_05401666.1| DNA topoisomerase III [Clostridium difficile QCD-23m63]
Length = 678
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 159/622 (25%), Positives = 275/622 (44%), Gaps = 75/622 (12%)
Query: 10 VLNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL +AEKPSV + +A +L SKN E N I G ++T GHL
Sbjct: 4 VLVLAEKPSVGRDIAKVLGSKN----------------EKNGYIEGP--KYVVTWALGHL 45
Query: 69 MEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQWL 118
+ L + ERY+ W D P L ++K + T++ + R +
Sbjct: 46 VTLADPESYGERYKSWSLEDLPILPKHLKTVVIKKSGKQFN-----TVKSQMNRNDIDEI 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
V+ D REGE +A +IE + ++R S+ D+ I + L ++ +
Sbjct: 101 VIATDAGREGELVARWIIEKSQVKKP---IKRLWISSSTDKAIKEGFAKLKSGKEYENLY 157
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A+ AR E D IG + TR ++T N LS G Q PTL +++R
Sbjct: 158 YSAI-ARAEADWIIGINATR------------ALTTKYNAQLSCGRVQTPTLAMLLKREE 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT---VTKV 292
EI+ + +E++ + F W + T + E +++ +++V
Sbjct: 205 EIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESTLKKVKGVDIKISEV 264
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSG 351
+ K KY P EL++ A++ F S++ T+ + + LY+ ++YPRT++ +S
Sbjct: 265 NKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRYLTS- 323
Query: 352 TNLHGIVQEQIGHPDWGPYAQ---RLLDHAAGLWRNPGSGGHDDKA-HPPIHPTKFSSGE 407
++ G ++++I + Y++ +LL + + N + H I PT+
Sbjct: 324 -DIVGTLKDRIKAVNISDYSRICNKLL--KSNITANKSFVDNSKVTDHHAIIPTEQKVFM 380
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL----AKNYLD 463
S +S K+Y LVV+ FLA +S P +T + + GE+F G ++ ++Y D
Sbjct: 381 SDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWKESYKD 440
Query: 464 VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
+ + + IP + L + SG T PPP L+E LL+ M+K G+GT AT
Sbjct: 441 IEDEDEYES--IPNVLEKDVLKVKGLKVTSGKTNPPPYLNEGTLLTAMEKNGLGTVATRA 498
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
D I+KL + F ++ N T+ G L+ D + +L P L + E + ++S G
Sbjct: 499 DIIEKLFNSFL-MEKKNKDIYITSKGRQLL---DLVPIDLKTPELTASWEKKLLDISKGK 554
Query: 584 KSKADVLANCLQQMKACFLDAR 605
SK + + K L+ +
Sbjct: 555 LSKNTFINDMKDYSKDIVLEVK 576
>gi|374322196|ref|YP_005075325.1| DNA topoisomerase III [Paenibacillus terrae HPL-003]
gi|357201205|gb|AET59102.1| DNA topoisomerase III [Paenibacillus terrae HPL-003]
Length = 710
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 160/604 (26%), Positives = 261/604 (43%), Gaps = 72/604 (11%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPSVA+ +A ++ RE Y I G ++T GH
Sbjct: 1 MKVLVLAEKPSVAREIARVMGS------REKHKSY---------IEGP--KYVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR-CQWLVLWL 122
L+ L D+D +Y W+ D L + K + E K + R+ L++
Sbjct: 44 LVGLAEPEDYDSKYTTWNLEDLPILPKSTKLKVLRESNHQFKAVQQLMKRQDIGELIVAT 103
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---DAV 179
D REGE +A +I++ N RR S+ D+ I + L+ P Q F ++
Sbjct: 104 DAAREGELLARWIIQMA---NWKKPFRRLWISSQTDKAIKEGFAKLL-PGQQFDRLYESA 159
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
R E D IG + TR ++T N LS G Q PTLG ++ER EI
Sbjct: 160 RCRAEADWMIGLNVTR------------ALTCRYNAQLSAGRVQTPTLGMIMEREKEITQ 207
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
S+E+ T+ + T +FD T A + ++ TV V++ EK +
Sbjct: 208 FRSQEYDTLTADFGDFQATWRAENGDSRMFDRTQAEALRRK-LEGVKGTVDSVKKSEKNE 266
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHGIV 358
P EL++ A++ + S++ T V + LY Q ++YPRT++ +S ++ +
Sbjct: 267 PHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLTS--DMVDTL 324
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH---DDKA---HPPIHPTKFSSGESRWSQ 412
+E++ GPYA A L R + DD H I PT+ + ++ S
Sbjct: 325 KERLNSVAVGPYA----SLARPLLRKSLTISKRIVDDSKVTDHHAIIPTEQTLLLNQLSP 380
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY------- 465
+ KLY+L+ R F++ PA V + + E F G I + VY
Sbjct: 381 EERKLYDLIARRFISLFYPPARYDAVAVAVTVEQETFQVKGTTIKDSGWRAVYDGSLYDT 440
Query: 466 ------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTD 519
R ++ G+++P G + +G T PP +EA LL+ M+K G+GT
Sbjct: 441 DEEAEEREDNGSGVILPELKKGDSVRIQRCLVRAGRTMPPKRYTEAALLAQMEKHGLGTP 500
Query: 520 ATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEV 579
AT D I+KL+ + N PT G+ L+ + +L P L + E++++ +
Sbjct: 501 ATRADLIEKLVSSDTIERQGNV-MHPTGKGKQLI---ELAAPQLRTPELTARWEAELERI 556
Query: 580 SVGN 583
+ G
Sbjct: 557 ARGQ 560
>gi|89897653|ref|YP_521140.1| DNA topoisomerase III [Desulfitobacterium hafniense Y51]
gi|89337101|dbj|BAE86696.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 729
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 162/632 (25%), Positives = 267/632 (42%), Gaps = 114/632 (18%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSVTG 66
L + EKPSV + +A +L NQ +G C + ++T G
Sbjct: 5 LVLTEKPSVGRDIAKLLGCNQ---------------------KGNGCFIGSRYIVTWALG 43
Query: 67 HLMELD----FDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
HL+ L + E+Y++W D P D+ V K + +K+ L + + L
Sbjct: 44 HLVTLADPEAYGEKYKQWRLEDLPMLPKDM-ELVVIKETSKQYAAVKQLLRQPD--VEEL 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD- 177
++ D REGE +A +I ++R S+ D+ I + NL P + +
Sbjct: 101 IIATDAGREGELVARWIIG---KAGWKKPIKRLWISSQTDKAIREGFNNL-KPGKAYESL 156
Query: 178 --AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A + R + D +G + TR ++T N LS G Q PTL VVER
Sbjct: 157 YAAAECRAQADWYVGLNVTR------------ALTCKYNAQLSAGRVQTPTLALVVEREK 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWM-----RGHLFDYTSAVIIYEMCVQE---PTA 287
EIQ + +WTIN + + SW + +FD A E VQ+
Sbjct: 205 EIQNFVPKGYWTINARVQG----FSLSWQDKGNGQNRMFDQKKA----EQLVQKLRGHKG 256
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETD 346
V +++++ K + PP EL++ A+R + S++ T + + LY Q ++YPRT++
Sbjct: 257 QVAEIKKEAKREQPPQAYDLTELQRDANRKYGFSAKQTSSIMQQLYEQHKLVTYPRTDSR 316
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPY---AQRLLDHAAGLWRNPGSGGHDDKA---HPPIHP 400
S ++ + E++ GPY A+R+L P D+ H I P
Sbjct: 317 YLSE--DIVPTLPERLKTIAVGPYSELARRVLRTKI----TPTKRLVDNSKVTDHHAIIP 370
Query: 401 TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
T+ + ++ S + K+Y+L+V F+A +S +T V++ I GE+F+ G+++ K
Sbjct: 371 TEQTVFLNKLSPEEAKIYDLIVHRFIAVLSPAFEYEQTTVKVEIQGELFTAKGKIVKQKG 430
Query: 461 YLDVYRFESWGG---------LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
+ VY +P Q L L G T+PP +EA LLS M
Sbjct: 431 WRSVYEGREAADEEADHEEQEQNLPDLQPKQTLEVLDLKLLPGKTKPPKRYTEATLLSAM 490
Query: 512 D-----------------KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVM 554
+ +G+GT AT D I+KL FY ++ PT+ G L+
Sbjct: 491 EHPGQRVNDEALRETLEKTSGLGTPATRADIIEKLFSSFYMERNGK-EIVPTSKGIQLI- 548
Query: 555 GYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+ EL P L + E + E+S G + +
Sbjct: 549 --GLVPSELKSPELTAKWEQQLSEISKGREDR 578
>gi|402813632|ref|ZP_10863227.1| DNA topoisomerase 3 [Paenibacillus alvei DSM 29]
gi|402509575|gb|EJW20095.1| DNA topoisomerase 3 [Paenibacillus alvei DSM 29]
Length = 724
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 272/628 (43%), Gaps = 72/628 (11%)
Query: 1 MAGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEF-NYSIRGQPCHM 59
M G + L +AEKPSV + +A +L R+ + + +E +Y
Sbjct: 1 MKGRNGCMKSLVLAEKPSVGREIARVLG---------CRTSHKQYFEGPDY--------- 42
Query: 60 LMTSVTGHLMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR- 114
++T GHL+ L D+D++Y+ W+ D + K + E K +++ +R
Sbjct: 43 VVTWALGHLVGLAEPEDYDKKYQTWNLEDLPMIPQKMKLKVLRESSHQFK-VVQQLCKRQ 101
Query: 115 -CQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQ 173
+ L++ D REGE +A V+E+ V + RR S+ D+ I + + L NQ
Sbjct: 102 DIKDLIVATDAAREGELLARWVMEM---VKWNKPFRRLWISSQTDKAIKEGFRQLKPGNQ 158
Query: 174 W--FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVV 231
+ ++ R E D IG + TR T + LS G Q PTL ++
Sbjct: 159 FDRLYESARCRAEADWLIGLNVTRALTCKFET------------PLSAGRVQTPTLAMMM 206
Query: 232 ERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTK 291
R EI+ +SEE+ TI+ E + G +F+ +A I A V
Sbjct: 207 SREQEIKNFQSEEYDTIHADCGGFEAVWRGANGDGRIFNEQAAQAIAAKLQNGRQAIVAD 266
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSS 350
+++ K + P EL++ A+R + S++ T V + LY Q ++YPRT++ SS
Sbjct: 267 LKKSTKNEPHPLAYDLTELQRDANRRYGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLSS 326
Query: 351 GTNLHGIVQEQIGHPDWGPYAQ--RLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSG 406
++ G ++E++ GPYA +LL + D K H I PT
Sbjct: 327 --DMVGTLKERLSAMAVGPYAAAAKLLLRGSRNLSVTKRIVDDSKVTDHHAIIPTDEPLR 384
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
S S D KLY+L+ R ++A PA + V I + GE GR +L + Y
Sbjct: 385 LSALSTDERKLYDLIARRYIALFLPPAKYEQVAVTIELGGERLYAKGRTMLDIGWRQAYE 444
Query: 467 FE----------------SWGG-LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
+ +W +P+ +G + + T+PP +EA LL+
Sbjct: 445 GDWDDTSSNEDQEEDHQSAWNKEQRLPSLTNGDKLAVKRVITRRDRTKPPARYTEATLLT 504
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K G+GT AT D I+KL+ I+ PT GE L+ D +L P L
Sbjct: 505 QMEKHGLGTPATRADIIEKLVSSD-TIERQGASLQPTGKGEQLIRLTSD---QLRSPELT 560
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQM 597
+ E +++ ++ G +++ N +++M
Sbjct: 561 ARWERELERIARG-EARTSTFMNQIREM 587
>gi|333923707|ref|YP_004497287.1| DNA topoisomerase I [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333749268|gb|AEF94375.1| DNA topoisomerase I [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 713
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 161/694 (23%), Positives = 281/694 (40%), Gaps = 122/694 (17%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM--LMTSVTG 66
L + E P+ AKS+ L +N Y+++ H+ L S G
Sbjct: 8 KTLVIVESPAKAKSIGKYLGRN-------------------YTVKASMGHLRDLPKSQFG 48
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+E +F +Y K +I K L ++ ++L D DR
Sbjct: 49 VDVESNFSPKYIAIRG------------------KGEIIKELRAAVKKADRILLASDPDR 90
Query: 127 EGENIAF---EVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
EGE IA+ +++++ NC R F+ + + I QAV++ + +A AR+
Sbjct: 91 EGEAIAWHLSKLLDIDENSNC-----RIEFNEITKQAIQQAVKHPRPIDIDRVNAQQARR 145
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+D +G + + +K LS G Q + +V+R EI+A E
Sbjct: 146 ILDRLVGYNLSPLLWRKVKKG------------LSAGRVQSVAVRLIVDREEEIKAFIPE 193
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYE---------MCVQEPTATVTKVRQ 294
E+W++ S+ +TF L+ Y + I ++ + V V +
Sbjct: 194 EYWSLTAKF-SKTAKSTFE---AKLYKYQNKKITIPNQEAMDKILADLKGVSYVVASVTR 249
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA---------GFISYPRTET 345
+EKL+ P P +T L++ ASR ++ TM VA+ LY+ G ++Y RT++
Sbjct: 250 KEKLRNPAPPFTTSSLQQEASRKLNFTARKTMAVAQQLYEGLELGKEGPVGLVTYIRTDS 309
Query: 346 DSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF 403
S + E+ G P + P R + G AH I PT
Sbjct: 310 TRVSETAVEEAKKFILERFG-PAYVPKES----------RQTVAKGKVQDAHEAIRPTSV 358
Query: 404 ----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAK 459
+ + + D YKLY+L+ FLA AV T ++I +F +G ++
Sbjct: 359 ERDPETIKEFLTNDQYKLYKLIWSRFLASQMAAAVMDTTSMDIEGGDYLFRATGSIVKFP 418
Query: 460 NYLDVYRFESWGGL-----VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
++ VY E+ G ++P G + +LT T+PPP ++A L+ +++
Sbjct: 419 GFMQVYIEENDDGTKEEEKLLPELAQGDKVEAKSLTPKQHFTQPPPRYTDATLVKVLEEK 478
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
GIG +T ++ + R Y +++ N +F PT +G +V + ++ + ME
Sbjct: 479 GIGRPSTYAPIVETIQKRGYVVRE-NKQFYPTELGIIVVDLLKNYFPDIINIEFTAEMEE 537
Query: 575 DMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEV 634
+ +++ G++ +VL + + A K K+ A + E+
Sbjct: 538 KLDQIAEGDQDWVNVLKDFYGPFQQTLATAEEKIGKVQVA-------------DEVTDEI 584
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
QCG NMV+K R G + C FP CRN
Sbjct: 585 CEQCG----KNMVIKMGRFGKFL-ACPGFPDCRN 613
>gi|296450304|ref|ZP_06892064.1| DNA topoisomerase TopB [Clostridium difficile NAP08]
gi|296878716|ref|ZP_06902720.1| DNA topoisomerase TopB [Clostridium difficile NAP07]
gi|296260865|gb|EFH07700.1| DNA topoisomerase TopB [Clostridium difficile NAP08]
gi|296430290|gb|EFH16133.1| DNA topoisomerase TopB [Clostridium difficile NAP07]
Length = 706
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 160/622 (25%), Positives = 277/622 (44%), Gaps = 75/622 (12%)
Query: 10 VLNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL +AEKPSV + +A +L SKN E N I G P +++ T GHL
Sbjct: 4 VLVLAEKPSVGRDIAKVLGSKN----------------EKNGYIEG-PKYVV-TWALGHL 45
Query: 69 MEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQWL 118
+ L + ERY+ W D P L ++K + T++ + R +
Sbjct: 46 VTLADPESYGERYKSWSLEDLPILPKHLKTVVIKKSGKQFN-----TVKSQMNRNDIDEI 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
V+ D REGE +A +IE + ++R S+ D+ I + L ++ +
Sbjct: 101 VIATDAGREGELVARWIIEKSQ---VKKPIKRLWISSSTDKAIKEGFAKLKSGKEYENLY 157
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A+ AR E D IG + TR ++T N LS G Q PTL +++R
Sbjct: 158 YSAI-ARAEADWIIGINATR------------ALTTKYNAQLSCGRVQTPTLAMLLKREE 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT---VTKV 292
EI+ + +E++ + F W + T + E +++ +++V
Sbjct: 205 EIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESTLKKVKGVDIKISEV 264
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSG 351
+ K KY P EL++ A++ F S++ T+ + + LY+ ++YPRT++ +S
Sbjct: 265 NKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRYLTS- 323
Query: 352 TNLHGIVQEQIGHPDWGPYAQ---RLLDHAAGLWRNPGSGGHDDKA-HPPIHPTKFSSGE 407
++ G ++++I + Y++ +LL + + N + H I PT+
Sbjct: 324 -DIVGTLKDRIKAVNISDYSRICNKLL--KSNITANKSFVDNSKVTDHHAIIPTEQKVFM 380
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL----AKNYLD 463
S +S K+Y LVV+ FLA +S P +T + + GE+F G ++ ++Y D
Sbjct: 381 SDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWKESYKD 440
Query: 464 VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
+ + + IP + L + SG T PPP L+E LL+ M+K G+GT AT
Sbjct: 441 IEDEDEYES--IPNVLEKDVLKVKGLKVTSGKTNPPPYLNEGTLLTAMEKNGLGTVATRA 498
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
D I+KL + F ++ N T+ G L+ D + +L P L + E + ++S G
Sbjct: 499 DIIEKLFNSFL-MEKKNKDIYITSKGRQLL---DLVPIDLKTPELTASWEKKLLDISKGK 554
Query: 584 KSKADVLANCLQQMKACFLDAR 605
SK + + K L+ +
Sbjct: 555 LSKNTFINDMKDYSKDIVLEVK 576
>gi|254975866|ref|ZP_05272338.1| DNA topoisomerase III [Clostridium difficile QCD-66c26]
gi|255314995|ref|ZP_05356578.1| DNA topoisomerase III [Clostridium difficile QCD-76w55]
gi|255517670|ref|ZP_05385346.1| DNA topoisomerase III [Clostridium difficile QCD-97b34]
gi|255650780|ref|ZP_05397682.1| DNA topoisomerase III [Clostridium difficile QCD-37x79]
gi|260683865|ref|YP_003215150.1| DNA topoisomerase III [Clostridium difficile CD196]
gi|260687525|ref|YP_003218659.1| DNA topoisomerase III [Clostridium difficile R20291]
gi|306520683|ref|ZP_07407030.1| DNA topoisomerase III [Clostridium difficile QCD-32g58]
gi|384361497|ref|YP_006199349.1| DNA topoisomerase III [Clostridium difficile BI1]
gi|260210028|emb|CBA64083.1| putative DNA topoisomerase [Clostridium difficile CD196]
gi|260213542|emb|CBE05286.1| putative DNA topoisomerase [Clostridium difficile R20291]
Length = 706
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 159/622 (25%), Positives = 276/622 (44%), Gaps = 75/622 (12%)
Query: 10 VLNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L +AEKPSV + +A +L SKN E N I G P +++ T GHL
Sbjct: 4 ILVLAEKPSVGRDIAKVLGSKN----------------EKNGYIEG-PKYVI-TWALGHL 45
Query: 69 MEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQWL 118
+ L + ERY+ W D P L ++K + T++ + R +
Sbjct: 46 VTLADPESYGERYKSWSLEDLPILPKHLKTVVIKKSGKQFN-----TVKSQMNRNDIDEI 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
V+ D REGE +A +IE + ++R S+ D+ I L ++ +
Sbjct: 101 VIATDAGREGELVARWIIEKSQ---VKKPIKRLWISSSTDKAIKDGFAKLRSGKEYENLY 157
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A+ AR E D IG + TR ++T N LS G Q PTL +++R
Sbjct: 158 YSAI-ARAEADWIIGINATR------------ALTTKYNAQLSCGRVQTPTLAMLLKREE 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT---VTKV 292
EI+ + +E++ + F W + T + E +++ +++V
Sbjct: 205 EIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESILKKVKGVDIKISEV 264
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSG 351
+ K KY P EL++ A++ F S++ T+ + + LY+ ++YPRT++ +S
Sbjct: 265 NKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRYLTS- 323
Query: 352 TNLHGIVQEQIGHPDWGPYAQ---RLLDHAAGLWRNPGSGGHDDKA-HPPIHPTKFSSGE 407
++ G ++++I + Y++ +LL + + N + H I PT+
Sbjct: 324 -DIVGTLKDRIKAVNISDYSKICNKLL--KSNIIANKSFVDNSKVTDHHAIIPTEQKVFM 380
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL----AKNYLD 463
S +S K+Y LVV+ FLA +S P +T + + GE+F G ++ ++Y D
Sbjct: 381 SDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWKESYKD 440
Query: 464 VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
+ + + IP + L + SG T PPP L+E LL+ M+K G+GT AT
Sbjct: 441 IEDEDEYES--IPNVLEKDVLKVKGLKITSGKTNPPPYLNEGTLLTAMEKNGLGTVATRA 498
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
D I+KL + F ++ N T+ G L+ D + +L P L + E + ++S G
Sbjct: 499 DIIEKLFNSFL-MEKKNKEIYITSKGRQLL---DLVPVDLKTPELTASWEKKLLDISKGK 554
Query: 584 KSKADVLANCLQQMKACFLDAR 605
SK + + K L+ +
Sbjct: 555 LSKNTFINDMKDYSKDIVLEVK 576
>gi|291548086|emb|CBL21194.1| DNA topoisomerase III, bacteria and conjugative plasmid
[Ruminococcus sp. SR1/5]
Length = 731
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 166/636 (26%), Positives = 281/636 (44%), Gaps = 118/636 (18%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L +Q + N ++ G+ ++T GH
Sbjct: 1 MKSLVIAEKPSVARDIARVLHCSQ---------------KGNGTLEGKA--YVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKK--DIKKTLEE-EARRCQW--- 117
L+ L ++D++Y KW +L P+ +PE K I++T ++ A + Q
Sbjct: 44 LVTLADPEEYDKKYTKW------ELSTLPM---MPEKMKLVVIRQTSKQYNAVKTQLYRK 94
Query: 118 ----LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQ 173
+++ D REGE +A ++ +CH ++R S++ D+ I +L + +
Sbjct: 95 DIGEIIIATDAGREGELVARWILA---KADCHKPIKRLWISSVTDKAIRDGFAHLKNGHD 151
Query: 174 W--FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVV 231
+ A AR E D +G + TR ++T N LS G Q PTL +
Sbjct: 152 YDDLYRAAQARAEADWLVGMNGTR------------ALTCKYNAQLSCGRVQTPTLAMIA 199
Query: 232 ERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRG-----HLFDYTSAVIIYEMCVQEPT 286
R EI+ + E+++ I + G ++W G F A I + + +
Sbjct: 200 RREQEIREFKPEDYYGIIL----QAGNVRWTWRDGKSGSLRTFKKERAQEI-QTKAGKSS 254
Query: 287 ATVTKVRQQEKLKYPP--YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRT 343
T+TKV ++ K Y P Y L+T L++ A++ + S++ T+ + + LY+ ++YPRT
Sbjct: 255 LTITKVSRKPKKTYAPGLYDLTT--LQREANQKYGFSAKETLNIMQRLYENHKVLTYPRT 312
Query: 344 ETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP---GSGGHDDKA---HPP 397
DS G ++ ++E++ GPY + A L P +G DDK H
Sbjct: 313 --DSRYIGKDVVPTIKERLQACGTGPYRK----LAGALVNKPIQTSAGFVDDKKVSDHHA 366
Query: 398 IHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL 457
I PT+ + + K+Y++VVR FL+ + PAV +E AGE F+ SGR++
Sbjct: 367 IIPTEQFVQLDHMTNEERKIYDMVVRRFLSVLYPPAVYELVSMEGTAAGETFAASGRIVK 426
Query: 458 AKNYLDVYRF--------ESWGGL---VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEAD 506
+ + +VY ES L +P GQ L +G T+PP +EA
Sbjct: 427 SAGWREVYEGGWQDEDEEESGDKLKDQKLPELTEGQILTVEGAALTAGKTKPPARFTEAT 486
Query: 507 LLSCMDK-------------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
LL M+ G+GT AT D I+KL + F K N + +
Sbjct: 487 LLGAMENPVHFMESHDKKAAKTLGETGGLGTVATRADIIEKLFNSFMMEKRGNEIYITSK 546
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
+ L + + EL KP L + E + +++ G
Sbjct: 547 AKQLLEL----VPEELKKPELTADWEMKLSDIANGK 578
>gi|225019441|ref|ZP_03708633.1| hypothetical protein CLOSTMETH_03394 [Clostridium methylpentosum
DSM 5476]
gi|224947770|gb|EEG28979.1| hypothetical protein CLOSTMETH_03394 [Clostridium methylpentosum
DSM 5476]
Length = 720
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 154/609 (25%), Positives = 266/609 (43%), Gaps = 73/609 (11%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L +AEKPSV + +A +L G + G + + Y ++T GHL
Sbjct: 3 KILVLAEKPSVGREIARVL----GCKRNAGGALSGEKY-------------IVTWALGHL 45
Query: 69 MEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKD---IKKTLEEEARRCQWLVLW 121
+EL + ++Y+ W + H K +PE K +K+ L + LV+
Sbjct: 46 VELAEPEHYGDQYKTWSMETLPMMPHKMALKVIPETSKQYSVVKRLLR--SPEVSSLVIA 103
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW--FADAV 179
D REGE +A +IE+ H ++R S+ D+ I + +L D ++ +
Sbjct: 104 TDAGREGELVARWIIEMA---GFHKPIKRLWISSQTDKAIKEGFAHLRDGREYENLYMSA 160
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
+R E D +G + TR ++T N LS G Q PTL + +R EI+
Sbjct: 161 QSRAEADWLVGLNVTR------------ALTCKYNAQLSAGRVQTPTLAILAQREEEIKK 208
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
+EF T+ S T + +FD A + E +P VT+V++ +K
Sbjct: 209 FVPKEFHTVRADLGSFFATYKDKNGQSMIFDKERADALGEKIKNKPFK-VTEVQRSKKST 267
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTNLHGIV 358
PP EL++ A++ + S++ T+++ + LY+ ++YPRT++ +S ++ +
Sbjct: 268 PPPMLYDLTELQRDANKMYGFSAKQTLQIMQRLYENHKALTYPRTDSRYLTS--DIVPTL 325
Query: 359 QEQ---IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHY 415
E+ + ++ P + ++ + + R + H I PT+ + + +
Sbjct: 326 NERLRAVSIGEFSPIVKDIITYHKQIARACVNNAKVSDHHAII-PTEQRADTLHMTSEEK 384
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-- 473
++Y LVV+ FL + VE+ GE F SGR IL + + VY F
Sbjct: 385 RIYLLVVKRFLTVFYPNYEYNKIKVELTCEGERFDASGREILHQGWKRVYDFRDEEEEEE 444
Query: 474 -VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK---------------AGIG 517
+P++ G F + + +G T PP +EA LLS M+ G+G
Sbjct: 445 QTLPSFHQGDVFTCKNIQVKAGRTSPPARYTEATLLSAMENPAKFIQDKRMKEFISGGLG 504
Query: 518 TDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMK 577
T AT D I+KL FY K NT PT+ G L+ + +L +P L + E ++
Sbjct: 505 TPATRADIIEKLFSSFYVEKRGNT-LIPTSKGMQLI---SLVPPDLKEPLLTAKWECQLE 560
Query: 578 EVSVGNKSK 586
E+ G+ K
Sbjct: 561 EIRKGSVKK 569
>gi|219854314|ref|YP_002471436.1| hypothetical protein CKR_0971 [Clostridium kluyveri NBRC 12016]
gi|219568038|dbj|BAH06022.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 729
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 169/639 (26%), Positives = 270/639 (42%), Gaps = 132/639 (20%)
Query: 10 VLNVAEKPSVAKSVAGIL---SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+L +AEKPSV + +A +L KN G I G ++T G
Sbjct: 6 ILVLAEKPSVGRDLAKVLHCNKKNLGY------------------IEGD--KYVVTWALG 45
Query: 67 HLMEL----DFDERYRKWHSCD----PADLYHAPVRKHVPE--------DKKDIKKTLEE 110
HL+ L D+DERY+ W D P L +++ + ++KDI +
Sbjct: 46 HLVTLADPEDYDERYKSWVLEDLPMLPDKLKLVVIKQSGKQFNIVKSQMNRKDIGE---- 101
Query: 111 EARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVD 170
+++ D REGE +A +IE R ++R S+ D+ I + NL +
Sbjct: 102 -------IIIATDSGREGELVARWIIEKAR---VKKTVKRLWISSQTDKAIKEGFANLKN 151
Query: 171 PNQW--FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLG 228
+++ A R E D +G + TR ++T N L+ G Q TL
Sbjct: 152 SSKYDNLYKAARCRAEADWVVGLNITR------------ALTCKYNAQLTAGRVQSATLA 199
Query: 229 FVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYE--------M 280
+V R EI+ ++++++ IN K T W D + IYE
Sbjct: 200 MIVNREEEIKNFKAKDYFVINAKTKE----FTLMWR-----DKNNNSNIYEENRVNKILA 250
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFIS 339
+ A + VR+ K +Y P EL++ A+R F S++HT+ + + LY+ ++
Sbjct: 251 ITKGKAANIIDVRESYKKQYAPALYDLTELQRDANRIFGYSAKHTLSIMQRLYENYKILT 310
Query: 340 YPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWR---NPGSGGHDDKA-- 394
YPRT DS T++ ++E++ G Y +A+ L + N G D+
Sbjct: 311 YPRT--DSRYISTDIVDTLKERLKAISVGSYKI----YASELLKTRINAHKGFVDNSKVS 364
Query: 395 -HPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSG 453
H I PT+ S S + +Y+LVV+ FLA + P +T + +I GE F G
Sbjct: 365 DHHAIIPTEEVLTLSLLSSEEKNIYDLVVKRFLAVMLPPFEYVQTSIITDINGENFIARG 424
Query: 454 RVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDS----------GVTRPPPLLS 503
+V+ +K + VY G VI + Q +P DS T+PP +
Sbjct: 425 KVVKSKGWKKVYDI---GNQVIEDDENENQILPELKKGDSIDIISIESRRLKTKPPARFN 481
Query: 504 EADLLSCMDK------------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
E LLS M+K GIGT AT D I+KL + FY K+ P
Sbjct: 482 EGTLLSAMEKPQKYISIDKLYAKTLGETGGIGTVATRADIIEKLFNMFYVEKNGKD-IIP 540
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNK 584
T+ G+ L+ + + +L P L + E D++ +S G K
Sbjct: 541 TSKGKQLI---ELVPEDLKSPLLTAQWEMDLELISKGKK 576
>gi|320161001|ref|YP_004174225.1| DNA topoisomerase I [Anaerolinea thermophila UNI-1]
gi|319994854|dbj|BAJ63625.1| DNA topoisomerase I [Anaerolinea thermophila UNI-1]
Length = 776
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 163/702 (23%), Positives = 287/702 (40%), Gaps = 122/702 (17%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM--LMTSVTGHL 68
L + E P+ AK+V L K ++++ H+ L+ S
Sbjct: 72 LVIVESPAKAKTVGRFLGKG-------------------FTVKASVGHVRDLLRSELSVD 112
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+E DF +YR VP +K+ + K L+ A+ + + L D DREG
Sbjct: 113 IEHDFQPKYR------------------VPNEKRAVVKELKALAQEAEEIYLATDPDREG 154
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
E IA+ +++ ++ L +R F + I +A + + N DA AR+ +D
Sbjct: 155 EAIAWHLMQAAE-IDPRLS-KRVVFHEITKPAIDEAFSHPREINMALVDAQQARRVLDRL 212
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
+G + + +++ LS G Q L +VER EIQA E+W+I
Sbjct: 213 VGYNLSPLLWEKVRSR------------LSAGRVQSVALRLIVEREREIQAFIPVEYWSI 260
Query: 249 NCSHKSEEGTATFSWMRGHL------FDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+ E ++TF + V Y +++ ++K+R+ E+ + P
Sbjct: 261 EAELQPEGVSSTFIAKLSKIDEQDPELPNQEVVSRYLADLEQALFIISKIRRSERRRKPA 320
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ---------AGFISYPRTETDSFSSGTN 353
P T L++ ASR ++ TM +A+ LY+ G I+Y RT++ TN
Sbjct: 321 APFITSTLQQEASRRLGFTARRTMAIAQQLYEGLDVGEGGTTGLITYMRTDS------TN 374
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESR---- 409
+ + ++ Y L + ++ + AH I PT + +
Sbjct: 375 ISEVALREVREFIKETYGGSYLPESPLQYKTRAVSAQE--AHEAIRPTSVARTPEKVKPY 432
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGE----VFSTSGRVILAKNYLDVY 465
S + YKLY+LV + F+AC + AV VE++ GE +F SG + +L VY
Sbjct: 433 LSPEQYKLYQLVWQRFVACQMESAVYDTLSVEVDAKGEEHQYLFRASGSTLKFPGFLVVY 492
Query: 466 RFESWGGLV---------IPTYVH-GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
V IP ++ GQ+ L + T+PPP +EA L+ +++ G
Sbjct: 493 EESRDEDQVSEDEGTETRIPAHIQEGQKQELVRLIPEQHFTQPPPRYTEATLVQVLEENG 552
Query: 516 IGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG----EALVMGYDDMGYELWKPNLRSM 571
IG +T + + +R Y ++D R PT G + +V + D + +
Sbjct: 553 IGRPSTYAPILSTIQERGYVVRDGK-RLVPTETGILVNDLIVAHFPD----IVDTGFTAK 607
Query: 572 MESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAA 631
ME D+ ++ GN+ +V+ Q ++++ ++L E +
Sbjct: 608 MEEDLDRIAAGNEKWVNVIRQFYQS-----FSPQVERARMLMP-----------ESKSEP 651
Query: 632 GEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR-NAVWL 672
+V RQC C +++++ R G + C FP CR WL
Sbjct: 652 EKVGRQCPQCGH-DLIVRWGRFGKF-ISCSNFPNCRYTEPWL 691
>gi|187250578|ref|YP_001875060.1| DNA topoisomerase I [Elusimicrobium minutum Pei191]
gi|186970738|gb|ACC97723.1| DNA topoisomerase [Elusimicrobium minutum Pei191]
Length = 765
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 159/647 (24%), Positives = 270/647 (41%), Gaps = 98/647 (15%)
Query: 95 KHVPEDK-KDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARF 153
K+VP +K K + LE+ A+ +++ L D DREGE IA+ ++E+ + + RR F
Sbjct: 68 KYVPVEKAKKMVSELEKLAKGSEYVYLATDPDREGEAIAWHLVELLKIPVEKI--RRIFF 125
Query: 154 SALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDR 213
+ + + + + N+ DA AR+ +D +G + +L K
Sbjct: 126 HEITPAAVKASFDHARNINKDLVDAQQARRVLDRLVG---YKLSPLLWKKITGG------ 176
Query: 214 NLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFS-----WMRG-- 266
LS G Q + + ER EI+ EE++++ + + T F+ W RG
Sbjct: 177 ---LSAGRVQSVAVRLLAERAKEIENFREEEYYSLTSELEKQGETPKFNARMLKW-RGKN 232
Query: 267 -------HLF--DYTSAVIIYEM---------CVQEPTATVTKVRQQEKLKYPPYPLSTI 308
HLF DY +++ +++ TV+K+ ++E + P T
Sbjct: 233 TEIITTYHLFAEDYKVKTTVFKKPEDLAPVNSLLRQGPLTVSKIEKKEVKQKAKPPFITS 292
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQA--------GFISYPRTETDSFSSGTNLHGIVQE 360
L++ A S+ TM A+ LY+ G I+Y RT DSF+ +L ++
Sbjct: 293 SLQQEAYNKIGFPSQKTMMTAQSLYEGVEIAGEVVGLITYMRT--DSFNVSKDLQSQTKK 350
Query: 361 QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF----SSGESRWSQDHYK 416
I G Y + +++ G + AH IHPT +S + S D YK
Sbjct: 351 FIA----GKYGDDFVPPTPNFFKSKVKGAQE--AHESIHPTDVYKTPASIKDYLSADQYK 404
Query: 417 LYELVVRHFLACVSQPAVGAETIVEINIAGE----VFSTSGRVILAKNYLDVYRFESW-- 470
LYEL+ F+A AV V+I AG+ V +GR + +L VY+ +
Sbjct: 405 LYELIWLRFIASQMADAVFNTVSVDIT-AGKAEECVLRATGRTVKFPGFLSVYKEDDSEE 463
Query: 471 ---GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
G ++P G + S T PPP +EA L+ ++K GIG +T IK
Sbjct: 464 EDEGSALLPNLTEGDDLNLIDIVTKSHKTAPPPNYNEASLIKTLEKHGIGRPSTYAPTIK 523
Query: 528 KLLDRFYAIKDANT-RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+LDR Y I+ T + T++G + D ++ + + +E + +++ G+
Sbjct: 524 TILDRKYIIRQPKTNKLIVTDLGVTVTDQLKDFFKDIMDLSYTAGIEEKLDDIAEGDNDW 583
Query: 587 ADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVV--RQCGICQES 644
V+ + + K A +D Q A +C +C S
Sbjct: 584 VKVIGDFYEGFKKDLATA--------------------DKDMQRAAPKPSDEKCPLCG-S 622
Query: 645 NMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA--VTTNTCNSC 689
MV+++SR G + C +P+C+ + L S + A VT C C
Sbjct: 623 PMVIRRSRFGEYL-ACSTYPECKGKINLTSSGEKLAPEVTEEKCEKC 668
>gi|153953693|ref|YP_001394458.1| DNA topoisomerase III [Clostridium kluyveri DSM 555]
gi|146346574|gb|EDK33110.1| TopA2 [Clostridium kluyveri DSM 555]
Length = 727
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 169/639 (26%), Positives = 270/639 (42%), Gaps = 132/639 (20%)
Query: 10 VLNVAEKPSVAKSVAGIL---SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTG 66
+L +AEKPSV + +A +L KN G I G ++T G
Sbjct: 4 ILVLAEKPSVGRDLAKVLHCNKKNLGY------------------IEGD--KYVVTWALG 43
Query: 67 HLMEL----DFDERYRKWHSCD----PADLYHAPVRKHVPE--------DKKDIKKTLEE 110
HL+ L D+DERY+ W D P L +++ + ++KDI +
Sbjct: 44 HLVTLADPEDYDERYKSWVLEDLPMLPDKLKLVVIKQSGKQFNIVKSQMNRKDIGE---- 99
Query: 111 EARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVD 170
+++ D REGE +A +IE R ++R S+ D+ I + NL +
Sbjct: 100 -------IIIATDSGREGELVARWIIEKAR---VKKTVKRLWISSQTDKAIKEGFANLKN 149
Query: 171 PNQW--FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLG 228
+++ A R E D +G + TR ++T N L+ G Q TL
Sbjct: 150 SSKYDNLYKAARCRAEADWVVGLNITR------------ALTCKYNAQLTAGRVQSATLA 197
Query: 229 FVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYE--------M 280
+V R EI+ ++++++ IN K T W D + IYE
Sbjct: 198 MIVNREEEIKNFKAKDYFVINAKTKE----FTLMWR-----DKNNNSNIYEENRVNKILA 248
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFIS 339
+ A + VR+ K +Y P EL++ A+R F S++HT+ + + LY+ ++
Sbjct: 249 ITKGKAANIIDVRESYKKQYAPALYDLTELQRDANRIFGYSAKHTLSIMQRLYENYKILT 308
Query: 340 YPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWR---NPGSGGHDDKA-- 394
YPRT DS T++ ++E++ G Y +A+ L + N G D+
Sbjct: 309 YPRT--DSRYISTDIVDTLKERLKAISVGSYKI----YASELLKTRINAHKGFVDNSKVS 362
Query: 395 -HPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSG 453
H I PT+ S S + +Y+LVV+ FLA + P +T + +I GE F G
Sbjct: 363 DHHAIIPTEEVLTLSLLSSEEKNIYDLVVKRFLAVMLPPFEYVQTSIITDINGENFIARG 422
Query: 454 RVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDS----------GVTRPPPLLS 503
+V+ +K + VY G VI + Q +P DS T+PP +
Sbjct: 423 KVVKSKGWKKVYDI---GNQVIEDDENENQILPELKKGDSIDIISIESRRLKTKPPARFN 479
Query: 504 EADLLSCMDK------------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
E LLS M+K GIGT AT D I+KL + FY K+ P
Sbjct: 480 EGTLLSAMEKPQKYISIDKLYAKTLGETGGIGTVATRADIIEKLFNMFYVEKNGKD-IIP 538
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNK 584
T+ G+ L+ + + +L P L + E D++ +S G K
Sbjct: 539 TSKGKQLI---ELVPEDLKSPLLTAQWEMDLELISKGKK 574
>gi|153938192|ref|YP_001390639.1| DNA topoisomerase III [Clostridium botulinum F str. Langeland]
gi|384461699|ref|YP_005674294.1| DNA topoisomerase III [Clostridium botulinum F str. 230613]
gi|152934088|gb|ABS39586.1| DNA topoisomerase III [Clostridium botulinum F str. Langeland]
gi|295318716|gb|ADF99093.1| DNA topoisomerase III [Clostridium botulinum F str. 230613]
Length = 731
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 158/627 (25%), Positives = 272/627 (43%), Gaps = 105/627 (16%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL +AEKPSV + +A +L N+ + N E N ++T GHL+
Sbjct: 4 VLVLAEKPSVGRDLAKVLKCNK---------KGNGYLEGN--------KYIVTWALGHLI 46
Query: 70 ELD----FDERYRKWHSCD-----PADLYHAPVRK---HVPEDKKDIKKTLEEEARRCQW 117
L +DE+Y+KW S D P + ++K H E +K + + EE
Sbjct: 47 TLSDPESYDEKYKKW-SMDTLPMLPKRMKTTVIKKTSKHFSEVRKVMTRKDVEE------ 99
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
LV+ D REGE +A +I+ V ++R S+ D+ I +NL P + + +
Sbjct: 100 LVIATDAGREGELVARWIID---KVGFKKPIKRLWISSQTDKAILDGFRNL-KPGKNYEN 155
Query: 178 AVDA---RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERY 234
+ R E D +G + TR ++T N LS G Q PTL +V+R
Sbjct: 156 LYHSAVCRSEADWIVGLNVTR------------ALTCRYNAQLSAGRVQTPTLAMIVQRE 203
Query: 235 WEIQAHESEEFWTINCSHKS-----EEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATV 289
EI+ + ++++I K E F+ L + ++ ++ +E +
Sbjct: 204 EEIKNFKPRDYYSIEGKTKGFIMHWENAKGGFNTFNEDL----AKKVVSKVTGKE--GRI 257
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSF 348
+V + K KY P EL++ A+R F S++ T+ + + LY+ ++YPRT++
Sbjct: 258 IEVTESSKKKYAPALYDLTELQRDANRIFGYSAKQTLSIMQRLYENHKILTYPRTDSRYI 317
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSG 406
S ++ G +++++ G Y++ + G + D K H I PT+
Sbjct: 318 SK--DIVGTIKDRLKAISIGNYSKFTNEILKGNIKAHKGFVDDSKVSDHHAIIPTEEKPK 375
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
S + +Y+LV++ FL+ + QP +T ++ + GE F G+VI +K + VY
Sbjct: 376 LGNLSGEERNIYDLVIKRFLSVMLQPFEYIQTTIKSEVIGEKFVARGKVIKSKGWKAVYD 435
Query: 467 FESWGGL------------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK- 513
E + +P G + T++ G T+PP +E LLS M+
Sbjct: 436 REEFDDKNNNSDSDDIKDQTLPKVNKGDSIKFSNFTINKGQTKPPARFNEGTLLSAMENP 495
Query: 514 -----------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY 556
G+GT AT D I+KL + FY I+ PT+ G+ ++
Sbjct: 496 QRYINLDKESSKTLGETGGLGTVATRADIIEKLYNTFY-IEKRGKEIVPTSKGKQVI--- 551
Query: 557 DDMGYELWKPNLRSMMESDMKEVSVGN 583
D + +L P L + E ++ +S GN
Sbjct: 552 DLVPKDLKSPLLTAKWERELDSISKGN 578
>gi|146278351|ref|YP_001168510.1| DNA topoisomerase I [Rhodobacter sphaeroides ATCC 17025]
gi|145556592|gb|ABP71205.1| DNA topoisomerase I [Rhodobacter sphaeroides ATCC 17025]
Length = 880
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 152/599 (25%), Positives = 260/599 (43%), Gaps = 55/599 (9%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIE-VCRAVNCHLVLRRARFS 154
V D K + + E + L+L D DREGE I++ + E + ++ + R F+
Sbjct: 53 EVAADSKKHVRAIAEALKTDDTLILATDPDREGEAISWHLQEALASSLKKGKTVSRVTFN 112
Query: 155 ALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRN 214
A+ + +A++ + +A AR+ +D +G + + L
Sbjct: 113 AITKAAVTEAMKAPRQVDTALVEAYLARRALDYLVGFTLSPVLWRKLPGAK--------- 163
Query: 215 LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRGHL--- 268
S G Q L +VER EI+A + EFWT++ + + +E A + + G
Sbjct: 164 ---SAGRVQSVCLRLIVEREMEIEAFRAREFWTVSAVLVTPRGQEFEARLTVLGGKKLDK 220
Query: 269 FDYTSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHT 325
FD +A E+ VQ T+ V V + + P P T L++ ASR F M ++
Sbjct: 221 FDLPTAEAA-ELAVQAVTSRPLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQC 279
Query: 326 MKVAEDLYQAGFISYPRTETDSFSSGTNLHGI--VQEQIGHPDWGPYAQRLLDHAAGLWR 383
M A+ LY+AG I+Y RT+ + + ++ + G D+ P + R +++
Sbjct: 280 MSAAQRLYEAGHITYMRTDGIDMAPEAVMAARDEIKRRFGA-DYVPDSPR-------MYK 331
Query: 384 NPGSGGHDDKAHPPIHPTKFSSGESRW---SQDHYKLYELVVRHFLACVSQPAVGAETIV 440
N + AH I PT S+ + D KLYEL+ + LA A T V
Sbjct: 332 NKAKNAQE--AHECIRPTDMSASPEKLGLTDADQRKLYELIWKRTLASQMAAARLERTTV 389
Query: 441 EI-NIAGEV-FSTSGRVILAKNYLDVYRF---------ESWGGLVIPTYVHGQQFIPTTL 489
EI + G+V +G+V+L +L VY E G L P + + ++
Sbjct: 390 EIASPDGQVGLRATGQVVLFDGFLKVYEEGRDDRGEGDEDEGRL--PQIMANEAVDKKSI 447
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
T + T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G
Sbjct: 448 TPEQHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKN-RLIPEDKG 506
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKK 608
+ + + + + + +E ++ +VS G ++ +VLA + A + A L+
Sbjct: 507 RLVTAFLANFFRKYVEYDFTADLEGELDDVSAGERNYKEVLARFWRDFSAAVAETADLRI 566
Query: 609 VKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
++L+ + F + G R C C + LK +R G +GC +P+CR
Sbjct: 567 GEVLDKLDDFLAPHL--YPPRPDGSDPRICPTCGSGRLHLKTARGGGAFIGCGNYPECR 623
>gi|347524481|ref|YP_004782051.1| DNA topoisomerase I [Pyrolobus fumarii 1A]
gi|343461363|gb|AEM39799.1| DNA topoisomerase I [Pyrolobus fumarii 1A]
Length = 676
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 162/625 (25%), Positives = 267/625 (42%), Gaps = 54/625 (8%)
Query: 1 MAGGGRPINV--LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCH 58
+AGG RP L +AEKP A +A L R + Y Y + +R
Sbjct: 2 VAGGCRPPRGYGLIIAEKPKAAAKIAEALGGRYARRC----TAYGVPY---WVLRVDGRL 54
Query: 59 MLMTSVTGHLMELDFDER------YRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEA 112
++ GHL L DER YR W D V E K +K L A
Sbjct: 55 FVVAPAAGHLYGLYTDERGFPVFTYR-WVPLD------------VAEGAKHARKFLALLA 101
Query: 113 RRCQWLVLWL---DCDREGENIAFEVIEVCRAVNCHLVLR--RARFSALIDREIHQAVQN 167
C+ +++ D D EG I + +I N V R R +FSAL +I +A +
Sbjct: 102 TLCRDASIYINACDYDVEGSVIGYMIIR-----NLGDVRRAYRMKFSALTPTDIRRAFRR 156
Query: 168 LVDPNQW-FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPT 226
L +P W +A AR E+D G + +R +K + + +VLS G Q PT
Sbjct: 157 L-EPLDWPMIEAGLARHELDWLWGINVSRALMEAVK------LVTGKKVVLSAGRVQSPT 209
Query: 227 LGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWM-RGHLFDYTSAVIIYEMCVQEP 285
L +R + H + + EG + R L + A I +
Sbjct: 210 LVEAAKREARRRLHVPYPRFNVQVWLAGREGRLKLTIASREKLIE---AKRIADRVAARG 266
Query: 286 TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTET 345
A V+ V + + PP + +L+ A+R + S T ++AE LY G ISYPRT +
Sbjct: 267 YAFVSSVAGRREYVKPPPAFNLSDLQMEAARLYGYSPAFTQEIAEQLYLDGLISYPRTNS 326
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS 405
+ GI++ P + +RLL G+ R P G +D AHP IHPT +
Sbjct: 327 QKLPHTLDFRGILEGLASIPAYTQLVKRLLLETRGVLR-PVQGPKEDPAHPAIHPTG-AV 384
Query: 406 GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY 465
+ ++ ++Y+L+VR FLA S+PAV ++ + SG +L + + Y
Sbjct: 385 PRRKLNRAEERIYDLIVRRFLAAFSKPAVVERVTATLDFGVVRVNVSGTRVLEEGWYVYY 444
Query: 466 RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
F S IP G++ + +++ T PP ++A L+ M++ GIGT+AT
Sbjct: 445 PF-SRPKDDIPRVSRGERLRVERVVVETVYTEPPEAYTKAKLVRWMEEVGIGTEATRARI 503
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
++ L DR Y ++ + T++G A+ + +L + E ++++ G +
Sbjct: 504 VETLFDRGY-LRLSGGYVTVTDLGFAVAEVLEKFFPKLTSVAMTREFERLLEDIRRGIRR 562
Query: 586 KADVLANCLQQMKACFLDARLKKVK 610
+A+V+ + + D + + ++
Sbjct: 563 RAEVVEEAKRVLSLLLEDYKKRAMR 587
>gi|269925605|ref|YP_003322228.1| DNA topoisomerase I [Thermobaculum terrenum ATCC BAA-798]
gi|269789265|gb|ACZ41406.1| DNA topoisomerase I [Thermobaculum terrenum ATCC BAA-798]
Length = 711
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 171/705 (24%), Positives = 272/705 (38%), Gaps = 127/705 (18%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM--LMTSVTG 66
N L + E P+ AK+++ L + YSI+ H+ L S G
Sbjct: 3 NKLVIVESPTKAKTISRYLGRG-------------------YSIKASMGHVRDLPKSKLG 43
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
E DF +Y +P DK K L+E + + L D DR
Sbjct: 44 VDTEHDFQPQY------------------LIPRDKSKTVKELKESVASAREVYLATDPDR 85
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE IA+ +I+ RR F + + A+ N + + DA AR+ +D
Sbjct: 86 EGEAIAWHLIQATGMDTSKA--RRVVFHEITPDAVRNAMANPREIDMRLVDAQQARRVLD 143
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
+G + + +L K LS G Q L VV+R EIQ+ E+W
Sbjct: 144 RLVGYNIS---PLLWKKVKRG---------LSAGRVQSVALRLVVDREREIQSFVPVEYW 191
Query: 247 TINCSHKSEEGTA-------TFSWMRGHLFDYTSAVIIYEMC------VQEPTATVTKVR 293
TI+ + F + + D + E ++ T V +V+
Sbjct: 192 TISADLAKQPAKGRKPSRKDQFRALLVRINDEKVEISNEEQARAIIEALEGATYKVLEVK 251
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA---------GFISYPRTE 344
Q+E + P P T +++ ASR ++ TM VA+ LY+ G I+Y RT+
Sbjct: 252 QREIQRKPAPPFITSTMQQEASRKLNFNARRTMSVAQSLYEGVSLGDEGDVGLITYMRTD 311
Query: 345 TDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFS 404
+ TN+ + QE+ + + L ++ + AH I PT
Sbjct: 312 S------TNVATVAQEEARQVIAQLFGDKYLPEKPPVYTKKAKNAQE--AHEAIRPTSVK 363
Query: 405 SGESRWSQ----DHYKLYELVVRHFLACVSQPAVGAETIVEINI------AGEVFSTSGR 454
Q D YKLY+L+ + F+A A+ T V+I A +F +G
Sbjct: 364 RHPDAIKQYLTSDQYKLYKLIWQRFIASQMANAIIDGTTVDIAAEPRSGGAPYIFRATGS 423
Query: 455 VILAKNYLDVYRF-------ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADL 507
VI +L VY+ E G +P G+ L + T+PPP +EA L
Sbjct: 424 VIKFDGFLVVYQEGKDDDQEEELGSKALPPMTEGEVLNLIQLLPEQHFTQPPPRYTEASL 483
Query: 508 LSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYE----L 563
+ +++ GIG +T + L +R+Y +KD PT +G M +D+ E +
Sbjct: 484 VKALEEQGIGRPSTYAIILSTLQERYYVVKDGKA-LVPTELG----MLVNDLLVEHFPDI 538
Query: 564 WKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWS 623
N S ME ++ +++ G ++ V+ F +KV++ E E
Sbjct: 539 VDVNFTSQMEEELDDIASGERAWVPVIKE--------FYGPFERKVRIAEE-----EMQK 585
Query: 624 GGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
+ AGE CG MV K R G + C FP+CR
Sbjct: 586 VDIQDEPAGENCPNCG----RPMVFKMGRYGKF-IACSGFPECRT 625
>gi|337750060|ref|YP_004644222.1| TopA protein [Paenibacillus mucilaginosus KNP414]
gi|336301249|gb|AEI44352.1| TopA [Paenibacillus mucilaginosus KNP414]
Length = 700
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 154/624 (24%), Positives = 264/624 (42%), Gaps = 82/624 (13%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEV---IEVCRAVNCHLVLRRARFSALI 157
K + K L++ ++R + + L D DREGE IA+ + +E+ C +V F+ +
Sbjct: 60 KGSVLKELKDASKRVKKVYLAADPDREGEAIAWHLAHYLELSDQDACRVV-----FNEIT 114
Query: 158 DREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
+ + A + NQ +A AR+ +D +G + +L K L
Sbjct: 115 KQAVKDAFKTPRKINQDLVNAQQARRILDRLVG---YKISPLLWKKVKKG---------L 162
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG--TATFSWMRGHLFDYTSAV 275
S G Q + + +R EI+A E EE+WTI + + A F + G + S
Sbjct: 163 SAGRVQSVAVKLIYDRENEIKAFEPEEYWTITAKLAANKSDFEAKFYSVNGEKKELKSQS 222
Query: 276 IIYEMC--VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
+ E+ + V++V+++E+L+ P P T L++ A+R + TM VA+ LY
Sbjct: 223 EVNEVLALLGGSDFVVSEVKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLY 282
Query: 334 Q---------AGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
+ G I+Y RT++ T + + QE+ G Y + +
Sbjct: 283 EGIDLGSEGTVGLITYMRTDS------TRISPVAQEEAKEYITGKYGEAYYPAEPRNYVK 336
Query: 385 PGSGGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
+ D AH I P+ S ++ S+D ++LY+LV F+A AV V
Sbjct: 337 KNANAQD--AHEAIRPSSVLREPESIKAHLSRDQFRLYKLVWERFVASQMASAVLDTMTV 394
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGL--------VIPTYVHGQQFIPTTLTLD 492
++N VF G I ++ VY S G +P G + P +
Sbjct: 395 DLNAGPVVFRAVGSKIKFHGFMKVYVESSDEGAADAADDDKFLPPLKQGDEAKPQAIDPK 454
Query: 493 SGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY-AIKDANTRFAPTNIGEA 551
T+PPP +EA L+ +++ GIG +T ++ + R Y AI++ +F PT +GE
Sbjct: 455 QHFTQPPPRYTEARLVKALEEMGIGRPSTYAPTLETIQKRGYVAIEE--KKFVPTELGEL 512
Query: 552 LVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKL 611
++ + E+ + ME + + G + VL+ F D+ K++++
Sbjct: 513 VIQQMIEFFPEILDVEFTAHMEEGLDHIEEGKEDWVRVLSE--------FYDSFEKRLEV 564
Query: 612 LEAMGIFFERWSGGEDQ-QAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAV 670
E E E Q + + E+ +CG ++ V K R G + C FP CRN
Sbjct: 565 AE------EEMEKIEIQDEVSDEICEKCG----NHFVYKMGRFGKFL-ACSGFPDCRNTK 613
Query: 671 WLPGSVSEAAVTTNTCNSCTPGPV 694
+ V + V TC SC G +
Sbjct: 614 PI---VKDTGV---TCPSCHEGKI 631
>gi|403381286|ref|ZP_10923343.1| DNA topoisomerase III [Paenibacillus sp. JC66]
Length = 711
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 158/622 (25%), Positives = 269/622 (43%), Gaps = 82/622 (13%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVAK +A +L R ++ YE ++T GH
Sbjct: 1 MKTLVLAEKPSVAKELARVLG---------ARQKHKSHYE--------GAQYVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRC--QWLVLW 121
L+ L D+D+RY+ W D + ++ V ++ + +E+ +R + LV+
Sbjct: 44 LITLAEPEDYDDRYKSWKLED-LPIIPGEMKLKVIKETSHQFRAIEKLGKRSDLKELVIA 102
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNL---VDPNQWFADA 178
D REGE +A ++E R +R S+ D+ I + L D N+ + A
Sbjct: 103 TDAGREGELVARWIMEKIR---WKKPFKRLWISSQTDQAIKEGFAKLKPGSDYNRLYQSA 159
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
V R E D IG + TR ++T N LS G Q PTLG ++E+ I+
Sbjct: 160 V-CRSEADWLIGLNVTR------------ALTSKYNAQLSAGRVQTPTLGMIIEKEKAIR 206
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRG-----HLFDYTSAVIIYEMCVQEPTATVTKVR 293
A + ++W + +++ GT W + + D A + + + + +++
Sbjct: 207 AFKPVDYWLL----QADIGTFQAQWRQAGSGEARIMDRAKAEDLSRRLGGQ-SGKIIRLQ 261
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGT 352
+ EK P EL++ A+R + S++ T + + LY Q ++YPRT++ +S
Sbjct: 262 KTEKRIPQPLAYDLTELQRDANRRYGFSAKQTSNILQRLYEQHKLVTYPRTDSRYLTS-- 319
Query: 353 NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH---DDKA---HPPIHPTKFSSG 406
++ + ++ GPYA A + + P DD H I PT+ +
Sbjct: 320 DMKSTFKSRLQSIAVGPYA----SLARNVLKQPLQVSKRIVDDSKVTDHHAIIPTEQTVL 375
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
+ S + KLY+L+VR FLA P +T V+I ++GE SG+ + + +VY
Sbjct: 376 LNSLSNEERKLYDLIVRRFLALFYPPCRYDQTKVQIQVSGETLWASGQHMKDAGWKEVYG 435
Query: 467 FESWGG------------LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+ ++P GQ + + T+PP +EA LL+ M+K
Sbjct: 436 SSDYTDDEDEPDNDSGPEQLLPELKEGQTVTIRQCRIQARQTKPPARYTEASLLTQMEKH 495
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
+GT AT D I+KLL I+ APT G L+ + EL P L + E
Sbjct: 496 NLGTPATRADIIEKLL-HSDTIERQGASLAPTGKGWQLI---ELAAEELRSPELTAKWEL 551
Query: 575 DMKEVSVGNKSKADVLANCLQQ 596
+++ ++ G L N +Q
Sbjct: 552 ELERIAKGQGQMKIFLDNIRKQ 573
>gi|375307020|ref|ZP_09772311.1| topoisomerase IA [Paenibacillus sp. Aloe-11]
gi|375080931|gb|EHS59148.1| topoisomerase IA [Paenibacillus sp. Aloe-11]
Length = 711
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 164/619 (26%), Positives = 268/619 (43%), Gaps = 74/619 (11%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPSVA+ +A ++ RE Y I G P +++ T GH
Sbjct: 1 MKVLVLAEKPSVAREIARVMGS------REKHKSY---------IEG-PKYVV-TWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR-CQWLVLWL 122
L+ L D+D +Y W+ D L + K + E K + R+ L++
Sbjct: 44 LVGLAEPEDYDSKYASWNLEDLPILPKSSKLKVLRESNHQFKAVQQLMKRQDIGELIVAT 103
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---DAV 179
D REGE +A +I++ N RR S+ D+ I + L+ P Q F ++
Sbjct: 104 DAAREGELLARWIIQMA---NWKKPFRRLWISSQTDKAIKEGFAKLL-PGQQFDRLYESA 159
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
R E D IG + TR ++T N LS G Q PTLG ++ER EI
Sbjct: 160 RCRAEADWMIGLNVTR------------ALTCRYNAQLSAGRVQTPTLGMIMEREKEITQ 207
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
S+E+ T+ + +FD T A + ++ TV V++ EK +
Sbjct: 208 FRSQEYDTLTADFGDFQAAWRAENGDSRMFDRTQAETLRRR-LEGAKGTVVSVKKSEKNE 266
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHGIV 358
P EL++ A++ + S++ T V + LY Q ++YPRT++ +S ++ G +
Sbjct: 267 PHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLTS--DMVGTL 324
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRN----PGSGGHDDKA--HPPIHPTKFSSGESRWSQ 412
+E++ GPYA A L RN D K H I PT+ + ++ S
Sbjct: 325 KERLSSVAVGPYA----SLARPLLRNNLLITKRIVDDSKVTDHHAIIPTEQTLLLNQLSP 380
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY------- 465
+ KLY+L+ R F++ PA V + + E F G I + VY
Sbjct: 381 EERKLYDLIARRFISLFYPPARYDAVAVSVTVEQETFQVKGTTIKDSGWRAVYDGSHYEM 440
Query: 466 -------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
R + +++P G + +G T PP +EA LL+ M+K G+GT
Sbjct: 441 DDEEAEDRENTERDVILPELKKGDAVRIQRSLVRAGRTMPPKRYTEAALLAQMEKHGLGT 500
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
AT D I+KL+ + N PT G+ L+ + +L P L + E++++
Sbjct: 501 PATRADLIEKLVSSDTIERQGNV-MHPTGKGKQLI---ELAAPQLRTPELTARWEAELER 556
Query: 579 VSVGNKSKADVLANCLQQM 597
++ G + K + N ++ M
Sbjct: 557 IARG-QGKPEPFLNSIRAM 574
>gi|240017570|ref|ZP_04724110.1| DNA topoisomerase I [Neisseria gonorrhoeae FA6140]
Length = 768
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 148/599 (24%), Positives = 261/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV N
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVANPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPDEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY ES G +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDGKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRRWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|379722908|ref|YP_005315039.1| TopA protein [Paenibacillus mucilaginosus 3016]
gi|386725686|ref|YP_006192012.1| TopA protein [Paenibacillus mucilaginosus K02]
gi|378571580|gb|AFC31890.1| TopA [Paenibacillus mucilaginosus 3016]
gi|384092811|gb|AFH64247.1| TopA protein [Paenibacillus mucilaginosus K02]
Length = 701
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 154/625 (24%), Positives = 264/625 (42%), Gaps = 83/625 (13%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEV---IEVCRAVNCHLVLRRARFSALI 157
K + K L++ ++R + + L D DREGE IA+ + +E+ C +V F+ +
Sbjct: 60 KGSVLKELKDASKRVKKVYLAADPDREGEAIAWHLAHYLELSDQDACRVV-----FNEIT 114
Query: 158 DREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
+ + A + NQ +A AR+ +D +G + +L K L
Sbjct: 115 KQAVKDAFKTPRKINQDLVNAQQARRILDRLVG---YKISPLLWKKVKKG---------L 162
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG--TATFSWMRGHLFDYTSAV 275
S G Q + + +R EI+A E EE+WTI + + A F + G + S
Sbjct: 163 SAGRVQSVAVKLIYDRENEIKAFEPEEYWTITAKLAANKSDFEAKFYSVNGEKKELKSQS 222
Query: 276 IIYEMC--VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
+ E+ + V++V+++E+L+ P P T L++ A+R + TM VA+ LY
Sbjct: 223 EVNEVLALLGGSDFVVSEVKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLY 282
Query: 334 Q---------AGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
+ G I+Y RT++ T + + QE+ G Y + +
Sbjct: 283 EGIDLGSEGTVGLITYMRTDS------TRISPVAQEEAKEYITGKYGEAYYPAEPRNYVK 336
Query: 385 PGSGGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
+ D AH I P+ S ++ S+D ++LY+LV F+A AV V
Sbjct: 337 KNANAQD--AHEAIRPSSVLREPESIKAHLSRDQFRLYKLVWERFVASQMASAVLDTMTV 394
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGL---------VIPTYVHGQQFIPTTLTL 491
++N VF G I ++ VY S G +P G + P +
Sbjct: 395 DLNAGPVVFRAVGSKIKFHGFMKVYVESSDEGAADAAADDDKFLPPLKQGDEAKPQAIDP 454
Query: 492 DSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY-AIKDANTRFAPTNIGE 550
T+PPP +EA L+ +++ GIG +T ++ + R Y AI++ +F PT +GE
Sbjct: 455 KQHFTQPPPRYTEARLVKALEEMGIGRPSTYAPTLETIQKRGYVAIEE--KKFVPTELGE 512
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK 610
++ + E+ + ME + + G + VL+ F D+ K+++
Sbjct: 513 LVIQQMIEFFPEILDVEFTAHMEEGLDHIEEGKEDWVRVLSE--------FYDSFEKRLE 564
Query: 611 LLEAMGIFFERWSGGEDQ-QAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNA 669
+ E E E Q + + E+ +CG ++ V K R G + C FP CRN
Sbjct: 565 VAE------EEMEKIEIQDEVSDEICEKCG----NHFVYKMGRFGKFL-ACSGFPDCRNT 613
Query: 670 VWLPGSVSEAAVTTNTCNSCTPGPV 694
+ V + V TC SC G +
Sbjct: 614 KPI---VKDTGV---TCPSCHEGKI 632
>gi|302348228|ref|YP_003815866.1| DNA topoisomerase III [Acidilobus saccharovorans 345-15]
gi|302328640|gb|ADL18835.1| DNA topoisomerase III [Acidilobus saccharovorans 345-15]
Length = 679
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 145/535 (27%), Positives = 240/535 (44%), Gaps = 34/535 (6%)
Query: 114 RCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQ 173
+ ++ + D D EG I +++IE A +R +FS+L E+ QA + L +
Sbjct: 106 KARYFINACDYDIEGSTIGYKIIE---AFGDKSRAKRMKFSSLTAAELRQAFRRLQPLDV 162
Query: 174 WFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER 233
A A AR E+D G + +R +L+K++ VT +R L LS G Q PTL + R
Sbjct: 163 NNAMAGIARAELDWLWGINISR---LLMKSYR--EVTGER-LSLSAGRVQTPTLAEAIRR 216
Query: 234 YWEIQAHES--EEFWTINCSHKSEEGTA-TFSWMRGHLFDYTS-AVIIYEMCVQEPTATV 289
+ +I H + T HK E TA W + + A + E E +
Sbjct: 217 WVKINTHVPIPQPSLTARLLHKGVEFTAYPLGWSVSTVKEAREVAKEVKEGMYME---VI 273
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS 349
+ R E ++ PP P + +L+K A+R + +S T +VAEDLY A ISYPRT ++
Sbjct: 274 SLSRASESVRPPP-PFNLTDLQKEAARIYGLSPYKTQEVAEDLYLAALISYPRTNSEKLP 332
Query: 350 SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE-- 407
N ++ P + LL G+ R P G DD AHP I+PT GE
Sbjct: 333 PTLNYREVLDSIGRQPKYRGLVGDLLRETGGVLR-PREGPADDPAHPAIYPT----GEQP 387
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPA-VGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
+R + H +Y+L+VR F+A + PA + + V ++ + G + + +L Y
Sbjct: 388 TRLDRVHETVYDLIVRRFMAAFAPPATLSTVSAVLTDVKARRWEARGLNVAERGWLKYYP 447
Query: 467 FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHI 526
F + +PT G + + ++T+ + P LS LL M+ +GT T I
Sbjct: 448 FHKFDESQLPTLNRGDRPLVRSITVKVSWSGPGLRLSRLSLLEWMEANDLGTKGTRARII 507
Query: 527 KKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+ L R + I + TN+G A+ ++ EL +L E + E+S+G S+
Sbjct: 508 ETLYKRGF-ITSRGSHAEITNLGYAVYKVLSEVAPELMSVSLTRDFERMLDEISMGKASR 566
Query: 587 ADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+V++ + + L R ++ MG + + G ++ +C IC
Sbjct: 567 EEVVSRAKKYISE--LVERQLNSNNIKVMGTYLAEFIGKVRPRS------RCAIC 613
>gi|431795310|ref|YP_007222215.1| DNA topoisomerase III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785536|gb|AGA70819.1| DNA topoisomerase III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 727
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 158/640 (24%), Positives = 273/640 (42%), Gaps = 130/640 (20%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSVTG 66
L + EKPSV + +A +L NQ +G C + ++T G
Sbjct: 5 LVLTEKPSVGRDIAKLLGCNQ---------------------KGNGCFIGSRYIVTWALG 43
Query: 67 HLMELD----FDERYRKWHSCDPADL---YHAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
HL+ L + ++Y+ W D L V K + +K+ L + + L+
Sbjct: 44 HLVTLAEPEAYGDQYKTWRLEDLPMLPKQMELVVIKETSKQYSAVKQLLRQPD--VEELI 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD-- 177
+ D REGE +A +I+ ++R S+ D+ I + NL P + +
Sbjct: 102 IATDAGREGELVARWIIQ---KAGWRKPIKRLWISSQTDKAIKEGFNNL-KPGKAYESLY 157
Query: 178 -AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
A + R + D +G + TR ++T N LS G Q PTL VVER E
Sbjct: 158 AAAECRAQADWYVGLNVTR------------ALTCKYNAQLSAGRVQTPTLALVVEREKE 205
Query: 237 IQAHESEEFWTINCSHKSEEGTATF-SWM-----RGHLFDYTSAVIIYEMCVQEPTAT-- 288
IQ +++WTI+ +G F W + +FD E +Q T
Sbjct: 206 IQKFVPKDYWTIHA-----QGQGYFLRWQDKSNGQSRIFDEQKV----EKLLQRLTGKQG 256
Query: 289 -VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETD 346
+T+++++ K PP EL++ A+R + S++ T + + LY Q ++YPRT++
Sbjct: 257 RLTEIKKEAKKDLPPQAYDLTELQRDANRKYGYSAKRTSSIMQQLYEQHKLVTYPRTDSR 316
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPYAQ--------------RLLDHAAGLWRNPGSGGHDD 392
+ ++ + E++ GPY++ RL+D++
Sbjct: 317 YLTD--DIVATLPERLKSIAVGPYSELTRRVLRTKIVTTKRLVDNSKVT----------- 363
Query: 393 KAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTS 452
H I PT+ + + SQ+ ++Y+L+VR F+A +S +T ++++I GEVF+
Sbjct: 364 -DHHAIIPTEQAVFLGKLSQEEARIYDLIVRRFIAVLSPAFEYEQTTIKVDIQGEVFTAK 422
Query: 453 GRVILAKNYLDVYR----FESWGG-----LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLS 503
G+++ +K + VY + G +P Q+ ++ SG T+PP +
Sbjct: 423 GKIMKSKGWRMVYEGNDSIDEEGDQEDQEQSLPDLKANQEIELLSIKSASGKTKPPKRYT 482
Query: 504 EADLLSCMD-----------------KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT 546
EA LLS M+ +G+GT AT D I+KL + FY ++ PT
Sbjct: 483 EATLLSAMEHPGQRLEDAKLRETLEKTSGLGTPATRADIIEKLFNSFYMERNGK-EITPT 541
Query: 547 NIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+ G LV + EL P L + E + E+S G + +
Sbjct: 542 SKGIQLV---GLVPAELKSPELTAKWEQQLHEISKGREDQ 578
>gi|343183589|gb|AEM01134.1| DNA topoisomerase I [Estrella lausannensis]
Length = 872
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 161/667 (24%), Positives = 270/667 (40%), Gaps = 102/667 (15%)
Query: 99 EDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCR-AVNCHLVLRRARFSALI 157
+DKK + +L+ A++ + L D DREGE IA+ + E+ + + + +R F+++
Sbjct: 58 KDKKKVCDSLKSAAKKSDVIYLCPDPDREGEAIAWHIQEILKDTLKKDIPFKRVTFNSIT 117
Query: 158 DREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
+ +A++ D N DA AR+ +D +G + +L K + R +
Sbjct: 118 KEAVLKALETPKDINHSLVDAQQARRLLDRIVG---YKISPILNKR-----IQRGRGEGV 169
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII 277
S G Q L VV+R EI+A + E+W + K E F + LF II
Sbjct: 170 SAGRVQSVALKLVVDREKEIEAFVAVEYWKLGALFKKAEDEKQF---KASLFSVDGKKII 226
Query: 278 YEM------------CVQEPTAT-------VTKVRQQEKLKYPPYPLSTIELEKRASRYF 318
E +E A V V ++EK ++P P T L++ ASR+F
Sbjct: 227 KESSEGDGYQIGNREAAEEVLARMKGHPYHVESVEKKEKRRFPVPPFITSTLQQEASRHF 286
Query: 319 RMSSEHTMKVAEDLY---------QAGFISYPRTETDSFS--SGTNLHGIVQEQIGHPDW 367
SS+ TM +A+ LY Q G I+Y RT++ + + + +Q Q G D+
Sbjct: 287 GFSSQRTMSIAQKLYEGIDMGTEGQEGLITYMRTDSVRVAPEAISEARSYIQNQYGA-DY 345
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVR 423
P + + D AH I PT E S++ + LY L+ R
Sbjct: 346 LPETPK--------YYTTKKSAQD--AHEAIRPTNLLHPPEKIEKYLSKEEFLLYRLIWR 395
Query: 424 HFLACVSQPAVGAETIVEI-NIAGEVFSTSGRVILAKNYLDVYRFESWGGL------VIP 476
FLA PAV V+I N G + +G VI +L VY + ++P
Sbjct: 396 RFLASQMMPAVYDTMSVDIVNGKGILLRATGSVIKFSGFLAVYEEKIDEEDKDEEDRLLP 455
Query: 477 TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 536
G+ + TRPPP +EA L+ ++K+G+G +T + K+ R Y +
Sbjct: 456 KLEEGETLKTLDFFHEQSFTRPPPRFTEASLVKELEKSGVGRPSTYAAIMNKIQSRDYTV 515
Query: 537 KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
K++ R PT +G + + ++ + ME D++ ++ + V+ + Q+
Sbjct: 516 KESG-RLKPTELGRVIANLLEANFKDIMDIGFTASMEDDLESIAESKRPWKAVVKDFWQR 574
Query: 597 MKACF-LDARLKKVKLLEA--------MGIFFERWSGG---------------------- 625
L + V +E G + WS
Sbjct: 575 FSPQLELAEKQAFVPKIETDIPCPQCESGKLQKIWSKNKYFFGCSNYPECSFSAPVETID 634
Query: 626 ---EDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVT 682
ED + ++C +C S M L+ SR G+ + GC +P C+ V +P E +
Sbjct: 635 FKKEDYAEDFDWDQKCPLCS-SEMKLRHSRFGSFL-GCSKYPDCKGLVNIPKK-GEKIIP 691
Query: 683 TNTCNSC 689
+ SC
Sbjct: 692 ESELPSC 698
>gi|261402841|ref|YP_003247065.1| DNA topoisomerase I [Methanocaldococcus vulcanius M7]
gi|261369834|gb|ACX72583.1| DNA topoisomerase I [Methanocaldococcus vulcanius M7]
Length = 928
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 134/526 (25%), Positives = 228/526 (43%), Gaps = 57/526 (10%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L + EKPSVAK +A L K + I +G Y + +++ S GH
Sbjct: 1 MTALIICEKPSVAKKIANALGKPKKKSI-DGVPYY--------ELERDGKKIIVASAVGH 51
Query: 68 LMELDFDERYR---------KW--HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQ 116
L L +E KW S D Y V K++ K L++ ++
Sbjct: 52 LFTLVENENNEFGKYPIFDIKWVPASVDKGKEY---VNKYI--------KALKKLSKEAD 100
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNC-HLVLRRARFSALIDREIHQAVQNLVDPNQWF 175
+ D D EGE I + ++ C C +R RFS+L +EI +A +N + +
Sbjct: 101 EFYIATDWDIEGELIGYHALKYC----CGREKAKRMRFSSLTKKEIVKAFENPDEIDYGL 156
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
DA ++R +D G + +R ++ + R +S G Q P L F+ ER
Sbjct: 157 VDAGESRHILDWYFGINLSRALMNAIRAVN-------RWKTMSVGRVQGPALAFLTEREL 209
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ- 294
EI+ + +W I K + +D A +YE E +A V ++++
Sbjct: 210 EIKKFIPKPYWVIEALLKD---NLKAIHEKEKFWDEKEAKSVYEKIKDEKSAKVVEIKKT 266
Query: 295 QEKLK-YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+ ++K PP+ L T L++ A YF++S + T ++A+ LY+ ISYPR+ +
Sbjct: 267 KRRIKPLPPFDLGT--LQREAYSYFKISPKETQEIAQRLYERALISYPRSSSQKLPKDRK 324
Query: 354 -LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ 412
L I+ HP +G +A+++L+ P G DD AHP IH E +
Sbjct: 325 YLEDILNIIKNHPIYGKWAEKILEKNL----KPVEGKKDDPAHPAIHIVDIPKEELSEKE 380
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG 472
+Y+L+ R L+ A V+I+I GE F SG + + + ++Y F +
Sbjct: 381 KK--IYDLIARRTLSAFWDNAEREYLNVKIDIKGEKFKLSGSRTVKEGWHEIYYFPKFDE 438
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
+ +P +T+ T+PP + A ++ ++K G+GT
Sbjct: 439 IELPPLKKNDIIKVEKITITRKETQPPKRYTVASIIKELEKRGLGT 484
>gi|392395542|ref|YP_006432144.1| DNA topoisomerase III [Desulfitobacterium dehalogenans ATCC 51507]
gi|390526620|gb|AFM02351.1| DNA topoisomerase III [Desulfitobacterium dehalogenans ATCC 51507]
Length = 729
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 162/632 (25%), Positives = 266/632 (42%), Gaps = 114/632 (18%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM----LMTSVTG 66
L + EKPSV + +A +L NQ +G C + ++T G
Sbjct: 5 LVLTEKPSVGRDIAKLLGCNQ---------------------KGNGCFIGAKYIVTWALG 43
Query: 67 HLMELD----FDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWL 118
HL+ L + ++Y+ W D P ++ V K + +K+ L + L
Sbjct: 44 HLVTLADPEAYGDQYKTWRLEDLPMLPKEM-ELVVIKETSKQYAAVKQLLRQPD--VDEL 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD- 177
++ D REGE +A +I R ++R S+ D+ I + NL P + +
Sbjct: 101 IIATDAGREGELVARWII---RKAGWKKPIKRLWISSQTDKAIREGFSNL-KPGKAYESL 156
Query: 178 --AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A + R + D +G + TR ++T N LS G Q PTL VVER
Sbjct: 157 YAAAECRAQADWYVGLNVTR------------ALTCKYNAQLSAGRVQTPTLALVVEREK 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWM-----RGHLFDYTSAVIIYEMCVQE---PTA 287
EIQ + +WTIN K + SW + +FD A E VQ+
Sbjct: 205 EIQNFVPKGYWTINARVKG----FSLSWQDKSNGQSRIFDQKKA----EQLVQKLRGHKG 256
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETD 346
V +++++ K + PP EL++ A+R + S++ T + + LY+ ++YPRT++
Sbjct: 257 LVAEIKKEAKKEQPPQAYDLTELQRDANRKYGFSAKQTSSIMQQLYEHHKLVTYPRTDSR 316
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH---DDKA---HPPIHP 400
S ++ + E++ GPYA + A + R P + D+ H I P
Sbjct: 317 YLSE--DIVPTLPERLKTIAVGPYA----ESARRVLRKPITPTKRWVDNSKVTDHHAIIP 370
Query: 401 TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
T+ + ++ S + K+Y+L+VR F+A +S +T V++ I GE F G+++ K
Sbjct: 371 TEQTVFLNKLSPEEVKIYDLIVRRFIAVLSPAFEYEQTTVKVEIQGEYFIAKGKIVKQKG 430
Query: 461 YLDVYRFESWGG---------LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 511
+ VY +P Q L L G T+PP +EA LLS M
Sbjct: 431 WRSVYEGRDAADEEADHEEQEQNLPDLQPKQSIEVLDLKLLPGKTKPPKRYTEATLLSAM 490
Query: 512 D-----------------KAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVM 554
+ +G+GT AT D I+KL FY ++ PT+ G L+
Sbjct: 491 EHPGQRVDDEALRETLEKTSGLGTPATRADIIEKLFSSFYMERNGK-EIIPTSKGIQLI- 548
Query: 555 GYDDMGYELWKPNLRSMMESDMKEVSVGNKSK 586
+ EL P L + E + E+S G + +
Sbjct: 549 --GLVPSELKSPELTAKWEQQLSEISKGREDR 578
>gi|158320507|ref|YP_001513014.1| DNA topoisomerase I [Alkaliphilus oremlandii OhILAs]
gi|158140706|gb|ABW19018.1| DNA topoisomerase I [Alkaliphilus oremlandii OhILAs]
Length = 692
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 166/709 (23%), Positives = 286/709 (40%), Gaps = 110/709 (15%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM--LMTSVTGHL 68
L + E P+ AK++ L KN Y ++ H+ L S G
Sbjct: 5 LVIVESPAKAKTIEKFLGKN-------------------YVVKASVGHIIDLPKSKLGVD 45
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
++ +F+ +Y PV K + KTL A++ + + L D DREG
Sbjct: 46 IDNNFEPQYITIRG-------KGPVLKEI--------KTL---AKKSKNVYLATDPDREG 87
Query: 129 ENIAFEVIEVCRAVNCHLVLR-RARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
E I++ + RA+ R F+ + I A++ NQ DA AR+ +D
Sbjct: 88 EAISWHL---ARALGIEASDDCRIEFNEITKNAIKSAIKKPRPINQDLVDAQQARRVLDR 144
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
+G + +L KN LS G Q +++R EI+ + EE+WT
Sbjct: 145 LVGYQIS---PLLWKNVRKG---------LSAGRVQSVATKLIIDREEEIKNFKPEEYWT 192
Query: 248 INCSHKSEEG-TATFSWMRGHLFD---YTSAVIIYEMC-VQEPTATVTKVRQQEKLKYPP 302
++ K++ + +L + +T A + + +Q A VT V++ EK + P
Sbjct: 193 LSLKIKTKNNENFEIKFQNDNLGNKEIHTEAEVDRILNHIQNHEAIVTSVKKGEKKRNPN 252
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA---------GFISYPRTETDSFS--SG 351
P +T L++ A+ S++ TM +A+ LY+ G ISY RT++ S S
Sbjct: 253 LPFTTSTLQQEAANKLGFSTKKTMSLAQQLYEGIDIGKSGTVGLISYIRTDSTRISQESS 312
Query: 352 TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHD-DKAHPPIHPTKFSSG---- 406
+ + E IG + H+ R G + AH I PT
Sbjct: 313 ESCKNYIHENIGESYY---------HSETKERKENKGKKNIQDAHEGIRPTDVYRHPDLI 363
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
+ S+D Y LY+L+ + F+A PAV VE +I +F +G ++ + +L VY
Sbjct: 364 KGFLSKDQYTLYKLIWQRFVASQMAPAVYDTLNVEFDINKVIFKATGSILRFEGFLKVYS 423
Query: 467 FESWG-GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
+ + + IP G+ T+PP SEA L+ M+ GIG +T
Sbjct: 424 YANVSENINIPDLAEGEVVTVLEQMPKQHFTQPPGRYSEATLVKTMEDLGIGRPSTYSPT 483
Query: 526 IKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKS 585
I +L R Y K+ + T +G + +D ++ N + +E + + G +
Sbjct: 484 ISTILSRGYVEKEGKS-LTATELGYIINEILEDYFSKIIDTNFTAKLEQSLDYIEEGTQD 542
Query: 586 KADVLANCLQQMKACFLDAR--LKKVKLLE-----------AMGIFFERWSG-------- 624
+++ + K L+A ++++ L+E M I R+
Sbjct: 543 WKKLISEFYEDFKVMLLNAEEHMEEINLVEESDEKCSKCDSVMLIKHGRYGKFLACSNYP 602
Query: 625 --GEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVW 671
E + ++ C C+ +++ K+S+ G L GC FP CR W
Sbjct: 603 ECEETKPFLYKIGVSCPKCESGDVIEKRSKKGRLFYGCSTFPDCRFVSW 651
>gi|83589874|ref|YP_429883.1| DNA topoisomerase I [Moorella thermoacetica ATCC 39073]
gi|83572788|gb|ABC19340.1| DNA topoisomerase I [Moorella thermoacetica ATCC 39073]
Length = 697
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 169/689 (24%), Positives = 279/689 (40%), Gaps = 113/689 (16%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHM--LMTSVTG 66
L + E P+ AK++ L KN Y+I+ H+ L S G
Sbjct: 4 KTLVIVESPAKAKTIGKFLGKN-------------------YTIKPSMGHVRDLPKSQFG 44
Query: 67 HLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDR 126
+E +F+ RY K +I K L A++ Q ++L D DR
Sbjct: 45 VDVENNFEPRYITIRG------------------KGEIVKELRAAAQKAQRVLLAPDPDR 86
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEID 186
EGE IA+ + + + + R F+ + I +AV+ +Q DA AR+ +D
Sbjct: 87 EGEAIAWHLQHLLGLPDEAI---RIEFNEITRNAIQEAVKKPRKIDQDRVDAQQARRILD 143
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
+G R +L + LS G Q + +V+R EI+A + EE+W
Sbjct: 144 RVVG---YRLSPLLWRKVRKG---------LSAGRVQSVAVRLIVDREQEIEAFQPEEYW 191
Query: 247 TINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEM-----CVQEPTATVTKVRQQEKLKY 300
++ E EG A + + + + + EM ++ T V +V+Q+E+ K
Sbjct: 192 SLTAWLLPENEGEAFPARLVKYAGEDLNVKNEGEMESILHSLEGTTYVVAEVKQRERRKN 251
Query: 301 PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----------GFISYPRTETDSFSS 350
P P +T L++ A R +S TM+VA+ LY+ G I+Y RT++ +S
Sbjct: 252 PAAPFTTSTLQQEAYRKLNFTSRRTMQVAQQLYEGIDLGGGQGPVGLITYIRTDSTRVAS 311
Query: 351 GTNLHG--IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF----S 404
L + E+ G ++ P GL + G D AH I PT +
Sbjct: 312 VAQLEARDFLMERFGS-EYVP---------EGLRQYKGRKDIQD-AHEAIRPTSVWREPA 360
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDV 464
S ++ ++D ++LY L+ F+A Q AV V+I +F +G V+ +L V
Sbjct: 361 SLKNILTRDQFRLYNLIWERFVASQMQAAVMDTVTVDITAGPCLFRATGSVVKFPGFLKV 420
Query: 465 YRFESWGG------LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
Y+ E G +P GQ +L T+PPP +EA L+ M++ GIG
Sbjct: 421 YQ-EGRDGEDKDQEQRLPPLATGQTLKLQSLEPKQHFTQPPPRYTEATLVKTMEELGIGR 479
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
+T I+ +L R Y ++ +F PT +G +V + ++ + ME +
Sbjct: 480 PSTYAPTIETILQRGYVTRE-QKQFVPTELGRVVVALLKEHFPKIIDVEFTAHMEEQLDA 538
Query: 579 VSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQC 638
+ G S VLA + A + G + +C
Sbjct: 539 IEAGKISWRQVLAEFYGPFEEVLEKAEAEI----------------GTVEVPEEVSEEKC 582
Query: 639 GICQESNMVLKKSRDGNLMVGCLAFPQCR 667
+C N+V+K R G + C FP+CR
Sbjct: 583 ELCG-RNLVVKMGRYGKFL-ACPGFPECR 609
>gi|260583823|ref|ZP_05851571.1| DNA topoisomerase [Granulicatella elegans ATCC 700633]
gi|260158449|gb|EEW93517.1| DNA topoisomerase [Granulicatella elegans ATCC 700633]
Length = 689
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 145/615 (23%), Positives = 266/615 (43%), Gaps = 69/615 (11%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
K D+ K+L++EA + + L D DREGE I++ + + + R F+ +
Sbjct: 61 KGDLIKSLKKEASKADAVYLASDPDREGEAISWHLAHLLGLDTTKPI--RVEFNEITKDA 118
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
+ +A +N + + DA AR+ +D +G + + +L K LS G
Sbjct: 119 VKEAFKNPRNLDMDLVDAQQARRILDRLVGYTIS---PILWKKVKKG---------LSAG 166
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINCSHK--SEEGTATFSWMRGHLFDYTSAVIIY 278
Q + +++R EIQ+ EE+WT++ + + +++ +A++ + S +
Sbjct: 167 RVQSIAVKLIIDREREIQSFVPEEYWTLDATFQKSTKKFSASYYGTTTEKVELKSQDEVN 226
Query: 279 EMCVQ---EPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ- 334
++ Q + TV KV ++E+ + P P +T L++ AS + TM VA+ LY+
Sbjct: 227 QVLKQIDEKSPFTVQKVTKKERRRNPAAPFTTSSLQQDASNKLNFRTRKTMMVAQQLYEG 286
Query: 335 --------AGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPG 386
G I+Y RT++ T + +++ Y +++
Sbjct: 287 VSLGRQGSVGLITYMRTDS------TRVSQTAKDEAKSYILSEYGS---EYSNSTRSTKV 337
Query: 387 SGGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
S G D AH I P+ S S ++D KLY L+ F+A AV VE+
Sbjct: 338 SEGAQD-AHEAIRPSSVMRTPDSIASYLTKDQLKLYTLIWSRFVASQMSAAVYDTVQVEL 396
Query: 443 NIAGEVFSTSGRVILAKNYLDVYR--FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
+VF +G I Y VY+ +S V+P V G L + T+PP
Sbjct: 397 EQNQQVFKANGSTIKFAGYQKVYQDNSDSKKSNVLPELVEGDTVSVQKLDPEQHFTQPPA 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
SEA L+ +++ G+G +T I+ + R+Y +K RF PT +GE + ++
Sbjct: 457 RYSEATLIKTLEEIGVGRPSTYAPTIETIQKRYY-VKLVAKRFEPTELGEIVHQMINNYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA--RLKKVKLLE----- 613
+ + + MES++ ++ G + V+ Q KA A +++KV++ +
Sbjct: 516 PNIVDTHFTAEMESELDQIEAGKQEWVQVIDRFYQPFKAEVDKAEIQIEKVQIKDEPAGF 575
Query: 614 -----------AMGIF--FERWSGGEDQQAAGEVVRQCGI----CQESNMVLKKSRDGNL 656
+G F F S D + +V++ G+ C + +++ +KS+ L
Sbjct: 576 NCEVCGSPMVIKLGRFGKFYACSNFPDCRHTAAIVKEIGVTCPHCHQGHVIERKSKKNRL 635
Query: 657 MVGCLAFPQCRNAVW 671
GC +P+C W
Sbjct: 636 FYGCDRYPECEFVSW 650
>gi|193214152|ref|YP_001995351.1| DNA topoisomerase I [Chloroherpeton thalassium ATCC 35110]
gi|193087629|gb|ACF12904.1| DNA topoisomerase I [Chloroherpeton thalassium ATCC 35110]
Length = 803
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 160/654 (24%), Positives = 274/654 (41%), Gaps = 88/654 (13%)
Query: 89 YHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVI-EVCRAVNCHLV 147
+H R V E K+ + + +++ A +++ D DREGE IA+ + EV A
Sbjct: 62 HHYEPRYEVIEGKEKVVREMKKLAGEADEIMIATDPDREGEAIAWHIANEVSGAKKP--- 118
Query: 148 LRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHID 207
+RR F+ + R + +A+Q D + + ARQ +D +G + F D
Sbjct: 119 IRRVLFNEITARAVKEAIQETRDIDYSLVRSQQARQAMDKIVGYRIS--------PFLWD 170
Query: 208 SVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG---TATFSWM 264
+V LS G Q L + ER EI A E++E+W+I +E G TA
Sbjct: 171 TVLRG----LSAGRVQSVALRLICEREAEIDAFETKEYWSILADFTTESGEKFTAKLVKQ 226
Query: 265 RGHLFDYTSAVIIYEMC--VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSS 322
G + + + + ++++R+++ + PP P +T L++ AS S
Sbjct: 227 NGKDIEIPNEAEAKRLLDLLNARLYAISEIRRRKTKRNPPAPFTTSLLQQSASNRLGYGS 286
Query: 323 EHTMKVAEDLYQA---------GFISYPRTETDSFSSGTNLHG--IVQEQIGHPDWGPYA 371
+ TM +A+ LY+ G I+Y RT++ S +Q+ G D+ P
Sbjct: 287 KKTMSLAQQLYEGIEIGSEGAVGLITYMRTDSKRISQDAQEEARKFIQQAFGE-DYTPEK 345
Query: 372 QRLLDHAAGLWRNPGSGGHDDKAHPPIHPT----KFSSGESRWSQDHYKLYELVVRHFLA 427
+ + AH I PT K S S+D +LYEL+ + F+A
Sbjct: 346 PKQYK----------TSEKAQDAHEAIRPTSVFRKPSDLAPFLSKDQLRLYELIWKRFVA 395
Query: 428 CVSQPAVGAETIVEINIAGE--VFSTSGRVILAKNYLDVY-------------RFESWGG 472
PA +T V+I+ + +F SG V+L +L ++ E
Sbjct: 396 SQMSPAELEQTGVDISDHEKEFIFRASGSVVLFDGFLKIFGDQRELDYEERKSTKEEASE 455
Query: 473 LVIPTYVHGQQFIPTTLTLDS-----GVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527
PT + +LTLD+ T+PP SEA L+ +D GIG +T I
Sbjct: 456 EDAPTKLPKNLKEKESLTLDALKENQHFTKPPARYSEASLVKELDNYGIGRPSTYASIIS 515
Query: 528 KLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKA 587
LLDR Y ++ R PT +G+ + EL+ + ME+++ +V+ G+
Sbjct: 516 TLLDRKY-VELRQRRLNPTELGKDVSRILIANFPELFNVTFTAGMENNLDKVAAGDDDYE 574
Query: 588 DVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMV 647
+L N + ++ E +G+ + + Q EV +CG E MV
Sbjct: 575 SLLDNFYKPLE--------------ETLGV--RKANPILPQNENAEVCDKCG---EGRMV 615
Query: 648 LKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKF 701
+K ++ G + GC +P+C+N + + T C+ C G + + + +F
Sbjct: 616 VKWTKSGKFL-GCSRYPKCKNIKPIAVEKPKPVETGIKCSKCESGRMVVREGRF 668
>gi|375085863|ref|ZP_09732485.1| DNA topoisomerase I [Megamonas funiformis YIT 11815]
gi|374566348|gb|EHR37593.1| DNA topoisomerase I [Megamonas funiformis YIT 11815]
Length = 749
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 148/612 (24%), Positives = 271/612 (44%), Gaps = 99/612 (16%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFE---VIEVCRAVNCHLVLRRARFSALI 157
K D+ K+L++EA++ + + L D DREGE IA+ ++ + C +V F+ +
Sbjct: 62 KGDLIKSLKKEAKKSEKVYLASDPDREGEAIAWHLSHILGIDEHEKCRIV-----FNEIT 116
Query: 158 DREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
I +AV+N + N DA AR+ +D +G + +L K L
Sbjct: 117 KPAIQEAVKNPKEINIDRVDAQQARRMLDRIVG---YKLSPLLWKKIRKG---------L 164
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFD------- 270
S G Q T+ + +R EIQ ESEE+WT++ K + ++ F + D
Sbjct: 165 SAGRVQSVTVKLICDREKEIQKFESEEYWTVDFKFKKKPRSSMFGAELVAIDDKKLMVSA 224
Query: 271 ------YTSAVIIYEMC--VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSS 322
S E+C +++ T VT+++++++ + P P +T L++ A+R +S
Sbjct: 225 KKEDVKIASKAQADELCSDIEKVTFKVTEIKKRQRHRKAPAPFTTSSLQQDAARKLGFTS 284
Query: 323 EHTMKVAEDLYQ---------AGFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYA 371
TM +A+ LY+ G I+Y RT++ S + ++E G ++ P
Sbjct: 285 RKTMMIAQQLYEGISLGKKGPTGLITYMRTDSTRISEIALNEARNYIEENFGK-EYLP-- 341
Query: 372 QRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLA 427
++ +AA G D AH + PT ++ E S++ KLY+L+ + FL
Sbjct: 342 EKPYIYAA------GKSSQD--AHEAVRPTNIALSPATVEEYLSKEQLKLYKLIWQRFLG 393
Query: 428 CVSQPAVGAETIVEINIAGEVF--STSGRVILAKNYLDVYR---FESWGGLVIPTYVHGQ 482
C PA + ++ + I G+ + +G + + VY + +++P G
Sbjct: 394 CQMLPA--SYDVMSVTIKGDKYLAKATGSQLKFAGFTAVYNDSDNKKEKDVILPDLQEGD 451
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
+ L T PP ++A L+ +++ GIG +T I+ +L R Y ++ ++ +
Sbjct: 452 ELSIQKLEAMQHFTEPPARYNDASLVKTLEERGIGRPSTYAPIIETILARGYVVR-SDKK 510
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
F PT++G +V + ++ + +E+ + E++VG
Sbjct: 511 FEPTDLGFVVVDLLEKYFKDIVDEKFTADLENKLDEIAVG-------------------- 550
Query: 603 DARLKKVKLLEAM-GIFFERWSGGEDQQAAGEVVR-----QCGICQESNMVLKKSRDGNL 656
+++K LLE G F + E++ EV QC +C MV+K+ R G
Sbjct: 551 --KIQKNTLLEEFYGPFEKTLEHAEEEIGEVEVPDEVSDVQCELCGRM-MVIKQGRYGKF 607
Query: 657 MVGCLAFPQCRN 668
+ C FP+CRN
Sbjct: 608 L-ACPGFPECRN 618
>gi|347550090|ref|YP_004856418.1| putative DNA topoisomerase III [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346983161|emb|CBW87209.1| Putative DNA topoisomerase III [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 717
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 154/606 (25%), Positives = 264/606 (43%), Gaps = 81/606 (13%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
L +AEKPSV K + +L QG N + G ++T GHL+
Sbjct: 4 TLVLAEKPSVGKDIGRVLGAKQGK---------------NGYLEG--GKYVVTWALGHLV 46
Query: 70 EL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLW 121
L +D +Y+ W+ D P + P+ K + + +KK + +V+
Sbjct: 47 TLADPERYDPKYKNWNMEDLPMLPEKMKLEPI-KQTRKQYETVKKLMNRTD--ITTIVIA 103
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD---A 178
D REGE +A +I+ + L+R S++ D+ I + ++L P + + + +
Sbjct: 104 TDAGREGELVARWIIDYAK---IKKPLKRLWISSVTDKAIREGFEHL-KPGKAYENLYHS 159
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
AR E D +G + TR ++T N LS G Q PTL + R EI+
Sbjct: 160 AVARSEADWVVGINATR------------ALTTKYNAQLSCGRVQTPTLAMIQHREEEIR 207
Query: 239 AHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
+ E++ I + E F+W G FD A + + +Q TA +T V +EK
Sbjct: 208 NFKPREYYGITALTEQE----CFTWNNGQTFDKALAEKLVK-SLQGETAVITDVSMKEKK 262
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSGTNLHGI 357
+ P EL++ A+ + S++ T+ + + LY+ ++YPRT DS T++
Sbjct: 263 TFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKILTYPRT--DSRFISTDIVPT 320
Query: 358 VQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESRWSQDHY 415
++E++ G A+ ++ + S + K H I PT+ S S
Sbjct: 321 LKERLQACGVGENAKAARQISSKPIKANKSFVDNSKVSDHHAIIPTEQSVSLGDLSDKER 380
Query: 416 KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVI 475
K+Y+LVV+ FLA +S P ET V+ I E F+ G+V+ + + +Y E+ +
Sbjct: 381 KIYDLVVKRFLAVLSDPYTYEETSVKAKIGQEDFTVKGKVVKSLGWKSIY-GETREPDQL 439
Query: 476 PTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM-------------------DKAGI 516
G + + L++G T+PP +EA LLS M D G+
Sbjct: 440 TKMKKGDKIPVKRVNLETGKTKPPARFNEATLLSAMENPAKYMETSSKALAKTLGDTGGL 499
Query: 517 GTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDM 576
GT AT D I+KL + F +++ T+ G L+ + + +L P L + E +
Sbjct: 500 GTVATRADIIEKLFNSF-SLEKQGKEIQITSKGRQLL---ELVPEDLKSPELTARWEQKL 555
Query: 577 KEVSVG 582
+++ G
Sbjct: 556 SKIAKG 561
>gi|310640308|ref|YP_003945066.1| DNA topoisomerase [Paenibacillus polymyxa SC2]
gi|386039469|ref|YP_005958423.1| DNA topoisomerase III [Paenibacillus polymyxa M1]
gi|309245258|gb|ADO54825.1| DNA topoisomerase [Paenibacillus polymyxa SC2]
gi|343095507|emb|CCC83716.1| DNA topoisomerase III [Paenibacillus polymyxa M1]
Length = 711
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 161/605 (26%), Positives = 260/605 (42%), Gaps = 73/605 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPSVA+ +A ++ RE Y I G ++T GH
Sbjct: 1 MKVLVLAEKPSVAREIARVMGS------REKHKSY---------IEGP--KYVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR-CQWLVLWL 122
L+ L D+D +Y W+ D L K + E K + R+ L++
Sbjct: 44 LVGLAEPEDYDSKYATWNLEDLPILPKNSKLKVLRESNHQFKAVQQLMKRQDIGELIVAT 103
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---DAV 179
D REGE +A +I++ N RR S+ D+ I L+ P Q F ++
Sbjct: 104 DAAREGELLARWIIQMA---NWKKPFRRLWISSQTDKAIKAGFAKLL-PGQQFDRLYESA 159
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
R E D IG + TR ++T N LS G Q PTLG ++ER EI
Sbjct: 160 RCRAEADWMIGLNVTR------------ALTVRYNAQLSAGRVQTPTLGMIMEREKEITQ 207
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
S+E+ T+ + T +FD T A + ++ TV V++ EK +
Sbjct: 208 FRSQEYDTLTADFGHFQATWRAENGDSRMFDRTQAETLRHR-LEGAKGTVVSVKKSEKNE 266
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHGIV 358
P EL++ A++ + S++ T V + LY Q ++YPRT++ +S ++ +
Sbjct: 267 PHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLYEQHKLVTYPRTDSRYLTS--DMVDSL 324
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRN--PGSGGHDDKA----HPPIHPTKFSSGESRWSQ 412
+E++ GPYA A L RN P + D + H I PT+ + ++ S
Sbjct: 325 KERLSSVAVGPYA----SLARPLLRNKLPITKRVVDDSKVTDHHAIIPTEQTLLLNQLSP 380
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY------- 465
+ KLY+L+ R F++ PA V + + E F G I + VY
Sbjct: 381 EERKLYDLIARRFISLFYPPARYDAVAVSVMVGQETFQVKGTTIKDSGWRAVYDESHYEL 440
Query: 466 -------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
R + G+++P G + +G T PP +EA LL+ M+K G+GT
Sbjct: 441 DDEEIDDRENNGRGVILPELKKGDSVQLQRCIVRAGRTMPPKRYTEAALLAQMEKHGLGT 500
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
AT D I+KL+ + N PT G+ L+ + +L P L + E++++
Sbjct: 501 PATRADLIEKLVSSDTIERQGNV-MHPTGKGKQLI---ELAAPQLRTPELTARWEAELER 556
Query: 579 VSVGN 583
++ G
Sbjct: 557 IARGQ 561
>gi|408789571|ref|ZP_11201226.1| DNA topoisomerase I [Lactobacillus florum 2F]
gi|408521177|gb|EKK21163.1| DNA topoisomerase I [Lactobacillus florum 2F]
Length = 705
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 148/615 (24%), Positives = 252/615 (40%), Gaps = 72/615 (11%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRA-VNCHLVLRRARFSALIDR 159
K D K L+ EA++ + + L D DREGE IA+ V + VN R F+ +
Sbjct: 78 KGDTIKMLKSEAKKAKAIYLASDPDREGEAIAWHVAHILNLDVNDK---NRVTFNEITKD 134
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSY 219
+ A +N + +A AR+ ID +G S + +L K LS
Sbjct: 135 TVKDAFKNPRTIDMKLVNAQQARRVIDRLVGYSIS---PLLWKKVKKG---------LSA 182
Query: 220 GPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKS--EEGTATFSWMRGH---LFDYTSA 274
G Q L +++R EI+A + EE+WTI K + A F + G L +
Sbjct: 183 GRVQSVALWIIIQREREIKAFQPEEYWTITSEFKKGRSKFQAAFYGLNGKRKKLKNNEDV 242
Query: 275 VIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ 334
+ + ++ +T V++ EK + PP P +T +++ A++ R + TM A+ LY+
Sbjct: 243 QKVLQKLTRQADFQITDVKKTEKKRQPPRPYTTSTMQQDANKKLRFRTGRTMMAAQQLYE 302
Query: 335 A---------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP 385
G I+Y RT++ SS + H +G ++AA R
Sbjct: 303 GINLGRDGNQGLITYMRTDSTRISSVAKHEAA---EFLHKHYGA------EYAANHPRKG 353
Query: 386 GSGGHDDKAHPPIHPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVE 441
AH + PT + E ++D +KLY L+ F+A PA+ V
Sbjct: 354 KLPEGAQDAHEAVRPTSVNFTPHEIEKYLTKDQFKLYNLIWSRFVASQMTPAIVDTETVS 413
Query: 442 INIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
I+ G F +G + + +L VY ++P G + + T+PP
Sbjct: 414 ISQNGVDFRANGSQLKFEGFLKVYAAGKEKDNILPELATGDLVQLVSHHPEQHFTQPPAR 473
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
SEA L+ +++ G+G +T + + R+Y +K RF PT +GE + ++
Sbjct: 474 YSEAALIKTLEENGVGRPSTYAPTLMTIQKRYY-VKLETRRFVPTELGEIVNSLIEEYFP 532
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM--KACFLDARLKKVKLLEAMGIFF 619
++ + + +E + E+ + V+ Q + + + ++ +++ E + F
Sbjct: 533 DIVNVDFTAAIEEQLDEIEEAKREWIKVVDEFYQPFSKEVGYAEKEMETIQIKEPLAGF- 591
Query: 620 ERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEA 679
C IC S MV+K + G C FP CRN + V E
Sbjct: 592 -----------------DCEICG-SPMVVKMGKYGKFF-ACSRFPDCRNTKTI---VKEI 629
Query: 680 AVTTNTCNSCTPGPV 694
V TC +C G V
Sbjct: 630 GV---TCPNCHKGQV 641
>gi|354581587|ref|ZP_09000491.1| DNA topoisomerase I [Paenibacillus lactis 154]
gi|353201915|gb|EHB67368.1| DNA topoisomerase I [Paenibacillus lactis 154]
Length = 699
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 143/618 (23%), Positives = 261/618 (42%), Gaps = 71/618 (11%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
K + K L++ +++ + + L D DREGE IA+ + + R F+ +
Sbjct: 60 KGSVLKELKDASKKVKKVYLAADPDREGEAIAWHLAHALELDESQSL--RVVFNEITKTA 117
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
+ A + N +A AR+ +D +G + +L K LS G
Sbjct: 118 VKDAFKTPRKINMDLVNAQQARRILDRLVG---YKISPLLWKKVKKG---------LSAG 165
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINC--SHKSEEGTATFSWMRGHLFDYTSAVIIY 278
Q + +++R EI A EE+WTI + K A F+ + G + +S +
Sbjct: 166 RVQSVAVKIILDRENEISAFVPEEYWTITAKLAVKGSSFEAKFTQLNGEKKELSSQEDVN 225
Query: 279 EM--CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA- 335
E+ +++ + TV +V+++E+ ++P P +T L++ A+R + TM VA+ LY+
Sbjct: 226 EVLAAIKDASFTVGEVKERERQRHPSPPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGV 285
Query: 336 --------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGS 387
G I+Y RT++ T + G Q++ Y + + + + +
Sbjct: 286 ELGKEGTVGLITYMRTDS------TRISGTAQDEAKEYITEKYGEPFVPESPRQYSKKAA 339
Query: 388 GGHDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEIN 443
D AH I PT S + S+D +LY+L+ F+A AV V+I+
Sbjct: 340 NAQD--AHEAIRPTSVLRDPESVKPYMSRDQLRLYKLIWERFVASQMASAVLDTLSVDIS 397
Query: 444 IAGEVFSTSGRVILAKNYLDVYRFESWGGLV-----IPTYVHGQQFIPTTLTLDSGVTRP 498
VF +G + ++ VY + G +P G Q + T+P
Sbjct: 398 AGTAVFRATGSKVRFPGFMKVYVEGNDDGTTEEDKYLPELHTGDQLDKQDIEPKQHFTQP 457
Query: 499 PPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY-AIKDANTRFAPTNIGEALVMGYD 557
PP +EA L+ +++ GIG +T ++ + R Y AI+D +F PT +GE ++ +
Sbjct: 458 PPRYTEARLVRTLEELGIGRPSTYAPTLETIQKRGYVAIED--KKFVPTELGELVIEQME 515
Query: 558 DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK------- 610
E+ + ME D+ V G++ VL+ + + A + +
Sbjct: 516 QFFPEILNVEFTANMEEDLDHVEEGSEDWVKVLSEFYKSFEKRLEVAEEEMKEIEIEDEV 575
Query: 611 -----------LLEAMGIF--FERWSGGEDQQAAGEVVRQCGI----CQESNMVLKKSRD 653
L+ +G F F SG D + +V+ G+ C+E ++V ++S+
Sbjct: 576 SDEICEKCGKPLVYKLGRFGKFLACSGFPDCRNTKPIVKDIGVTCPKCKEGHVVERRSKK 635
Query: 654 GNLMVGCLAFPQCRNAVW 671
G + GC +P+C W
Sbjct: 636 GRIFFGCDRYPECDFVSW 653
>gi|429207011|ref|ZP_19198271.1| DNA topoisomerase I [Rhodobacter sp. AKP1]
gi|428190006|gb|EKX58558.1| DNA topoisomerase I [Rhodobacter sp. AKP1]
Length = 884
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 146/596 (24%), Positives = 255/596 (42%), Gaps = 48/596 (8%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIE-VCRAVNCHLVLRRARFS 154
V D K + + + + L+L D DREGE I++ + E + ++ +RR F+
Sbjct: 53 EVAADSKKHVRAIADALKTDDTLILATDPDREGEAISWHLQEALASSLKKGKTVRRVTFN 112
Query: 155 ALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRN 214
A+ + +A++ + + +A AR+ +D +G + + L
Sbjct: 113 AITKSAVTEAMKAPREVDTALVEAYLARRALDYLVGFTLSPVLWRKLPGAK--------- 163
Query: 215 LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRG---HL 268
S G Q L +VER EI+A + EFWT++ + + +E A + + G
Sbjct: 164 ---SAGRVQSVCLRLIVEREMEIEAFRAREFWTVSAVLATPRGQEFEARLTVLGGKKLEK 220
Query: 269 FDYTSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHT 325
FD ++ E+ VQ T+ V V + + P P T L++ ASR F M ++
Sbjct: 221 FDLATSEAA-ELAVQAVTSRPLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQC 279
Query: 326 MKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP 385
M A+ LY+AG I+Y R TD +++I + + + +++N
Sbjct: 280 MSAAQRLYEAGHITYMR--TDGIDMAPEAVMAARDEIKR----RFGANYVPDSPRMYKNK 333
Query: 386 GSGGHDDKAHPPIHPTKFSSGESRW---SQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
+ AH I PT S+ + D KLYEL+ + LA A T VEI
Sbjct: 334 AKNAQE--AHECIRPTDMSASPEKLGLTDTDQRKLYELIWKRTLASQMAAARLERTTVEI 391
Query: 443 -NIAGEV-FSTSGRVILAKNYLDVYRFESWGGLV--------IPTYVHGQQFIPTTLTLD 492
+ G+V +G+V+L +L VY +P + + ++T +
Sbjct: 392 ASPDGQVGLRATGQVVLFDGFLKVYEEGRDDRSDGDEDDEGRLPQIMANEAVEKKSITPE 451
Query: 493 SGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G +
Sbjct: 452 QHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKN-RLIPEDKGRLV 510
Query: 553 VMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKVKL 611
+ + + + + +E ++ +VS G ++ +VLA + A + A L+ ++
Sbjct: 511 TAFLANFFRKYVEYDFTADLEGELDDVSAGERNYKEVLARFWRDFSAAVAETADLRIGEV 570
Query: 612 LEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
L+ + F + G R C C + LK +R G +GC +P CR
Sbjct: 571 LDKLDDFLAPHL--YPPRPDGSDPRICPTCGSGRLHLKTARGGGAFIGCGNYPDCR 624
>gi|126725957|ref|ZP_01741799.1| DNA topoisomerase I [Rhodobacterales bacterium HTCC2150]
gi|126705161|gb|EBA04252.1| DNA topoisomerase I [Rhodobacterales bacterium HTCC2150]
Length = 870
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 150/606 (24%), Positives = 258/606 (42%), Gaps = 73/606 (12%)
Query: 94 RKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC---RAVNCHLVLRR 150
RKHV K I L+++ L+L D DREGE I++ + E +A+ + R
Sbjct: 59 RKHV----KAIADALKDD----NELILATDPDREGEAISWHLQEALTKRKAIKKSTPVSR 110
Query: 151 ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT 210
F+A+ + +A+QN + DA AR+ +D +G + + L
Sbjct: 111 VVFNAITKNAVTEAMQNPRAVDMELVDAYLARRALDYLVGFNLSPVLWRKLPGAR----- 165
Query: 211 DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT---ATFSWMRGH 267
S G Q L +V+R EI+A + E+W++ + + G A + + G
Sbjct: 166 -------SAGRVQSVCLRLIVDREMEIEAFNAREYWSVKAALTTPRGQNFEARLTMLAGK 218
Query: 268 L---FDYTSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMS 321
FD ++V EM VQ T+ V V + + P P T L++ ASR F M
Sbjct: 219 KVDKFDLENSVAA-EMAVQAVTSRDLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMG 277
Query: 322 SEHTMKVAEDLYQAGFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAA 379
+ TM A+ LY+AG+I+Y RT+ + + T+ + + G ++ P + R
Sbjct: 278 ARQTMSTAQRLYEAGYITYMRTDGIDMAPEAITDARAAISSRYGA-EYVPKSPR------ 330
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKFSSGESRWS---QDHYKLYELVVRHFLACVSQPAVGA 436
+++N + AH I PT+ S + + D KLY+L+ + LA + A
Sbjct: 331 -IYKNKAKNAQE--AHECIRPTELSKSANDLNLTDADQRKLYDLIWKRTLASQMEGARLE 387
Query: 437 ETIVEINIAGE--VFSTSGRVILAKNYLDVYR------FESWGGLVIPTYVHGQQFIPTT 488
T V+I + + +G+V++ ++ VY +P + + +
Sbjct: 388 RTTVDIGSEDKQVMLRATGQVVMFDGFMKVYEEGRDDDVVDDDDKRLPQIMQDEPMDKRS 447
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+T + T+PPP +EA L+ M++ GIG +T + + +R Y KD N R P +
Sbjct: 448 VTPEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQEREYVRKDKN-RLFPEDK 506
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR--- 605
G + + + + + + +ES + VS G+ VL A +
Sbjct: 507 GRIVTVFLLNYFRKYVGFDFTADLESQLDNVSAGDADYKVVLEQFWHDFSAAIAETSELR 566
Query: 606 ----LKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
L K+ A ++ R G + + C +C E + LK SR G VGC
Sbjct: 567 ISDVLTKLDAALAPQLYPPREDGADP--------KTCPLCGEGKLHLKSSRSGGF-VGCG 617
Query: 662 AFPQCR 667
+P+CR
Sbjct: 618 NYPECR 623
>gi|308067536|ref|YP_003869141.1| topoisomerase IA [Paenibacillus polymyxa E681]
gi|305856815|gb|ADM68603.1| Topoisomerase IA [Paenibacillus polymyxa E681]
Length = 711
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 157/605 (25%), Positives = 259/605 (42%), Gaps = 73/605 (12%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL +AEKPS+A+ +A R+ R +Y E ++T GH
Sbjct: 1 MKVLVLAEKPSMAREIA---------RVMGSREKYKSYIEGP--------QYVVTWALGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEAR-RCQWLVLWL 122
L+ L D+D +Y W+ D L + K + E K + R L++
Sbjct: 44 LVGLAEPEDYDSKYATWNLEDLPILPKSSKLKVLRESNHQFKAVQQLMKRPDIGELIVAT 103
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA---DAV 179
D REGE +A +I++ N RR S+ D+ I L+ P Q F ++
Sbjct: 104 DAAREGELLARWIIQMA---NWKKPFRRLWISSQTDKAIKAGFAKLL-PGQQFDRLYESA 159
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
R E D IG + TR ++T N LS G Q PTLG ++ER EI
Sbjct: 160 RCRAEADWMIGLNVTR------------ALTCRYNAQLSAGRVQTPTLGMIMEREKEITE 207
Query: 240 HESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLK 299
S+E+ T+ + T +FD T A + ++ TV V++ EK +
Sbjct: 208 FRSQEYDTLTADFGDFQATWRAESGDSRMFDRTQAEALRRR-LEGAKGTVASVKKSEKNE 266
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNLHGIV 358
P EL++ A++ + S++ T + + LY Q ++YPRT++ +S ++ +
Sbjct: 267 PHPLAYDLTELQRDANQRYGFSAKQTSNLLQRLYEQHKLVTYPRTDSRYLTS--DMVDTL 324
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRN--PGSGGHDDKA----HPPIHPTKFSSGESRWSQ 412
+E++ GPYA A L RN P + D + H I PT+ + ++ S
Sbjct: 325 KERLSSVAVGPYA----SLARPLLRNNLPITKRIVDDSKVTDHHAIIPTEQTLLLNQLSP 380
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY------- 465
+ KLY+L+ R F++ PA V + + E F G + + VY
Sbjct: 381 EERKLYDLIARRFISLFYPPARYDAVAVSVTVEQETFQVKGTTVKDSGWRAVYDANHYDM 440
Query: 466 -------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
R + G+++P G + +G T PP +EA LL+ M+K G+GT
Sbjct: 441 DDEEAEDRENNGRGVILPELQKGDSVRLQRCLVRAGRTMPPKRYTEAALLAQMEKHGLGT 500
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
AT D I+KL+ + N PT G+ L+ + +L P L + E++++
Sbjct: 501 PATRADLIEKLVSSDTIERQGNV-MHPTGKGKQLI---ELAAPQLRTPELTARWEAELER 556
Query: 579 VSVGN 583
++ G
Sbjct: 557 IARGQ 561
>gi|77462727|ref|YP_352231.1| DNA topoisomerase I [Rhodobacter sphaeroides 2.4.1]
gi|221638588|ref|YP_002524850.1| DNA topoisomerase I [Rhodobacter sphaeroides KD131]
gi|332557609|ref|ZP_08411931.1| DNA topoisomerase I subunit omega [Rhodobacter sphaeroides WS8N]
gi|77387145|gb|ABA78330.1| DNA topoisomerase I [Rhodobacter sphaeroides 2.4.1]
gi|221159369|gb|ACM00349.1| DNA topoisomerase I [Rhodobacter sphaeroides KD131]
gi|332275321|gb|EGJ20636.1| DNA topoisomerase I subunit omega [Rhodobacter sphaeroides WS8N]
Length = 884
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 146/596 (24%), Positives = 255/596 (42%), Gaps = 48/596 (8%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIE-VCRAVNCHLVLRRARFS 154
V D K + + + + L+L D DREGE I++ + E + ++ +RR F+
Sbjct: 53 EVAADSKKHVRAIADALKTDDTLILATDPDREGEAISWHLQEALASSLKKGKTVRRVTFN 112
Query: 155 ALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRN 214
A+ + +A++ + + +A AR+ +D +G + + L
Sbjct: 113 AITKSAVTEAMKAPREVDTALVEAYLARRALDYLVGFTLSPVLWRKLPGAK--------- 163
Query: 215 LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRG---HL 268
S G Q L +VER EI+A + EFWT++ + + +E A + + G
Sbjct: 164 ---SAGRVQSVCLRLIVEREMEIEAFRAREFWTVSAVLATPRGQEFEARLTVLGGKKLEK 220
Query: 269 FDYTSAVIIYEMCVQEPTA---TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHT 325
FD ++ E+ VQ T+ V V + + P P T L++ ASR F M ++
Sbjct: 221 FDLATSEAA-ELAVQAVTSRPLKVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQC 279
Query: 326 MKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNP 385
M A+ LY+AG I+Y R TD +++I + + + +++N
Sbjct: 280 MSAAQRLYEAGHITYMR--TDGIDMAPEAVMAARDEIKR----RFGANYVPDSPRMYKNK 333
Query: 386 GSGGHDDKAHPPIHPTKFSSGESRW---SQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
+ AH I PT S+ + D KLYEL+ + LA A T VEI
Sbjct: 334 AKNAQE--AHECIRPTDMSASPEKLGLTDTDQRKLYELIWKRTLASQMAAARLERTTVEI 391
Query: 443 -NIAGEV-FSTSGRVILAKNYLDVYRFESWGGLV--------IPTYVHGQQFIPTTLTLD 492
+ G+V +G+V+L +L VY +P + + ++T +
Sbjct: 392 ASPDGQVGLRATGQVVLFDGFLKVYEEGRDDRSDGDEDDEGRLPQIMANEAVEKKSITPE 451
Query: 493 SGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
T+PPP +EA L+ M++ GIG +T + + DR Y KD N R P + G +
Sbjct: 452 QHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKN-RLIPEDKGRLV 510
Query: 553 VMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLD-ARLKKVKL 611
+ + + + + +E ++ +VS G ++ +VLA + A + A L+ ++
Sbjct: 511 TAFLANFFRKYVEYDFTADLEGELDDVSAGERNYKEVLARFWRDFSAAVAETADLRIGEV 570
Query: 612 LEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
L+ + F + G R C C + LK +R G +GC +P CR
Sbjct: 571 LDKLDEFLAPHL--YPPRPDGSDPRICPTCGSGRLHLKTARGGGAFIGCGNYPDCR 624
>gi|194099894|ref|YP_002003031.1| DNA topoisomerase I [Neisseria gonorrhoeae NCCP11945]
gi|193935184|gb|ACF31008.1| DNA topoisomerase I [Neisseria gonorrhoeae NCCP11945]
Length = 784
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 147/599 (24%), Positives = 261/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV +
Sbjct: 87 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVAHPR 146
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 147 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 194
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 195 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPNEAAQADVLKEL 254
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 255 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 312
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 313 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 364
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 365 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 422
Query: 447 EVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY ES G +P G + L + T PPP
Sbjct: 423 GVFRVTGQVQTFAGFLSVYEESSDDEESEDGKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 482
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 483 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 541
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 542 QYVDYHFTAKLEDQLDEIADGKRRWIPVMDK--------FWKPFIKQVE--EKEGIERAK 591
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 592 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 642
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 702 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 743
>gi|28210156|ref|NP_781100.1| DNA topoisomerase III [Clostridium tetani E88]
gi|28202592|gb|AAO35037.1| DNA topoisomerase I [Clostridium tetani E88]
Length = 730
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 160/633 (25%), Positives = 268/633 (42%), Gaps = 103/633 (16%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPSV + +A +L N+ R ++Y ++T GHL+
Sbjct: 5 LVLAEKPSVGREIARVLKCNKNSRSYIESNKY-----------------VVTWALGHLVT 47
Query: 71 LD----FDERYRKWHSCDPADLYH-------APVRKHVPEDKKDIKKTLEEEARRCQWLV 119
L +D +Y+KW L K E KK + + +E +V
Sbjct: 48 LADPEVYDNKYKKWEMETLPMLPKYMKLCVIGKTSKQFNEVKKLMNRNDIDE------IV 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLV---DPNQWFA 176
+ D REGE +A +IE R + ++R S+ D+ I NL D +
Sbjct: 102 IATDAGREGELVARWIIEKARV---NKPIKRLWISSQTDKAIIDGFNNLKPGKDYENLYK 158
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
AV R E D +G + TR ++T N LS G Q PTL +VER E
Sbjct: 159 SAV-CRSEADWLVGLNVTR------------ALTCKYNAQLSAGRVQTPTLALIVEREEE 205
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWM--RGHLF----DYTSAVIIYEMCVQEPTATVT 290
I+ + +++ I K F+W +G + D+ + ++ V VT
Sbjct: 206 IKNFKPRDYYNIVAKTKG----IQFNWQDKKGQMATFNEDFANNIL---AKVSGEIGNVT 258
Query: 291 KVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFS 349
+V +++K +Y P EL++ A+R F S++ T+ + + LY+ ++YPRT++ S
Sbjct: 259 EVIEKDKKQYAPALYDLTELQRDANRIFGYSAKETLSIMQRLYENHKVLTYPRTDSRYIS 318
Query: 350 SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGE 407
++ + +++ G Y++ + G D K H I PT+
Sbjct: 319 K--DIVATIPQRLKSISIGIYSKFAEEILRGKIVAHKGFVDDSKVSDHHAIIPTEERVKL 376
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRF 467
S S D K+Y+LV++ FL+ + P +T +++ + GEVF G+ I + VY
Sbjct: 377 SNLSGDERKIYDLVIKRFLSVMLPPFEYIQTTIKVEVNGEVFIAKGKNIKHNGWKAVYNK 436
Query: 468 ESWG-------GL---VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK---- 513
E GL V+P + G + ++ G T+PP +E LLS M+
Sbjct: 437 EDLNEDNNDGDGLKEQVLPQIIKGDAIKFNLVNINKGQTKPPARFNEGTLLSAMENPQKY 496
Query: 514 --------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
G+GT AT D I+KL + FY I+ PT+ G+ ++ D +
Sbjct: 497 IKLNKEYAKTLGETGGLGTVATRADIIEKLYNSFY-IEKKGKEIIPTSKGKQII---DLV 552
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
+L P L + E ++ +S G S + + N
Sbjct: 553 PQDLKSPILTAEWEKKLELISKGKISGKEFINN 585
>gi|85057722|ref|YP_456638.1| DNA topoisomerase [Aster yellows witches'-broom phytoplasma AYWB]
gi|84789827|gb|ABC65559.1| DNA topoisomerase [Aster yellows witches'-broom phytoplasma AYWB]
Length = 647
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 159/681 (23%), Positives = 281/681 (41%), Gaps = 95/681 (13%)
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKH-VPEDKKDIKKTLEEEARRCQW 117
L+ S GH+ +L + R D+ + K+ + ++K +I +TL ++ + +
Sbjct: 25 FLILSSKGHIRDLSLKGKDRMG-----IDIEKGFIPKYSIIKEKDNIVETLIQKTK-GKE 78
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
++L D DREGE IA+ + ++ + R F + + +A+Q N+
Sbjct: 79 VLLATDPDREGEAIAWHLSQILNLDSQKT--NRIVFREITKEAVLKALQQPRKINELLVF 136
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
+ + R+ +D IG +R L S G Q L +V+ +I
Sbjct: 137 SQETRRMLDRIIGFKLSRLVRRLKSQ--------------SAGRVQSVALKLIVDLEEKI 182
Query: 238 QAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297
+A EE++ I K + + +G + + I+ + +++ + V +++QQE
Sbjct: 183 KAFVPEEYYIITAFFKDFQAEYQNPY-KGKIKAQEAFTIVQQ--IKDKSFLVKELKQQET 239
Query: 298 LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA--------GFISYPRTETDSFS 349
K+P P T L++ A + M+S M+VA+ LY+ G I+Y RT++ +
Sbjct: 240 KKFPKPPFITSTLQQEAIKSLNMTSNQVMRVAQKLYEGVDILGESKGLITYMRTDSQRLA 299
Query: 350 S--GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
+ ++++Q G G Y +N + D AH I PT S
Sbjct: 300 DIFVKDAQKLIKKQYGEEYLGTY------------KNSKTPQSQD-AHEAIRPTDLSKTP 346
Query: 408 SRWSQ--DHY--KLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLD 463
+ D Y KLY+L+ + LA + PA+ +T V +A +F T + Y
Sbjct: 347 ESLAPHLDKYENKLYKLIYQRTLASLMTPAIFQKTQVFFEVANHLFLTESLIKTFDGYQK 406
Query: 464 VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
+ + + +IP++ + ++P + T PP SEA L+ ++K IG +T
Sbjct: 407 LLQ-DGDKDKIIPSFKSNETYLPQEIQNLQKFTNPPSRFSEATLIKTLEKLNIGRPSTYS 465
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
I L R Y + RF PT G + ++ + ME ++ ++S G
Sbjct: 466 QIIFTLKKRIY-VDLVEKRFVPTEQGILTTKNLELFFKQIIDVKYTAKMEENLDKISSGL 524
Query: 584 KSKADVLANCLQQMKACF--LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+K ++L K + D +L+K K +E DQ +C +C
Sbjct: 525 VNKKELLQEFYDAFKQLYQIADQKLEKTKDIET------------DQ--------KCNLC 564
Query: 642 QESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAV-----TTNTCNSCTPGPVYL 696
+ +++KK R GN + GC FP+C+N V L S T CN C P+
Sbjct: 565 N-APLLIKKGRYGNFL-GCSRFPECKNIVSLKEKTSSLETNPDMKTDQKCNLCN-APLL- 620
Query: 697 IQFKFRQHEIPPGFNVNHLGC 717
I G N LGC
Sbjct: 621 ---------IKKGRYGNFLGC 632
>gi|226324171|ref|ZP_03799689.1| hypothetical protein COPCOM_01950 [Coprococcus comes ATCC 27758]
gi|225207720|gb|EEG90074.1| DNA topoisomerase [Coprococcus comes ATCC 27758]
Length = 733
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 154/642 (23%), Positives = 274/642 (42%), Gaps = 106/642 (16%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L +AEKPSVA+ +A +L + + N +I G+ ++T GH
Sbjct: 1 MKALVIAEKPSVARDIARVLKCGK---------------KINGAIEGE--RYIVTWGLGH 43
Query: 68 LMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEA--------RRC 115
L+ L D+D++Y++W D + AP + V IK+T ++ A +
Sbjct: 44 LVTLADPEDYDKKYKEW-KIDVLPMKPAPFKLEV------IKQTGKQFAAVKTQIHRKDV 96
Query: 116 QWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWF 175
+++ D REGE +A ++E ++R S++ D+ I + L + +++
Sbjct: 97 NEIIIATDAGREGELVARLILE---KAGSKKPIKRLWISSVTDKAIREGFAKLKNGHEYD 153
Query: 176 A--DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER 233
A DA R E D +G + TR ++T N LS G Q PTL + +R
Sbjct: 154 ALYDAAMCRAEADWLVGINATR------------ALTCKYNAQLSCGRVQTPTLAMIAKR 201
Query: 234 YWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTS----AVIIYEMCVQEPTATV 289
+I++ E ++ + ++ +W Y S + + E A V
Sbjct: 202 EEKIRSFIPESYYGMTAKGQN----IMLTWQDQKSKSYRSFDKEKMTGLMKKLDEQKAVV 257
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSF 348
++++ K Y P EL++ A++ F S++ T+ + + LY+ ++YPRT++
Sbjct: 258 EEIKKTPKKTYAPLLYDLTELQREANQRFGYSAKETLNIMQRLYENHKVLTYPRTDSRYL 317
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSG 406
S ++ +++++ GPY + + + +D K H I PT+
Sbjct: 318 SK--DIVPTIKDRLEACGTGPYRKLAMTAKKKDLSGKLAFVNDAKVSDHHAIIPTEQFVD 375
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
S + + K+Y+LVVR FLA + P +T V + + GE F SG+++ A+ + Y
Sbjct: 376 LSHMTNEERKIYDLVVRRFLAVLYPPFEYEQTQVTVKVGGETFLASGKIVKAQGWRAAYE 435
Query: 467 FE-----------------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
E S G +P GQ+ L+L G T+PP +EA LLS
Sbjct: 436 EEVYSAEDEEEEEAYESGKSLKGQTLPELEKGQEIKGLVLSLTEGKTKPPAHFNEATLLS 495
Query: 510 CM----------DKA---------GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
M DKA G+GT AT D I+KL F + + +
Sbjct: 496 AMENPTAYMESHDKAMAKTLGETGGLGTVATRADIIEKLFKSFLLENRGKDIYLTSKAKQ 555
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
L + + EL +P L + E + +++ G S+ D + +
Sbjct: 556 LLEL----VPEELKQPELTADWEMRLSQIAKGKLSRKDFMKD 593
>gi|53803091|ref|YP_115233.1| DNA topoisomerase I [Methylococcus capsulatus str. Bath]
gi|53756852|gb|AAU91143.1| DNA topoisomerase I [Methylococcus capsulatus str. Bath]
Length = 768
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 161/638 (25%), Positives = 262/638 (41%), Gaps = 95/638 (14%)
Query: 94 RKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRA--VNCHLVLRRA 151
+KHV + I K +E + L L D DREGE I++ + E+ + V + R
Sbjct: 61 KKHV----QAISKAME----KADALYLATDPDREGEAISWHLYELLKEQQVLDSKPVHRV 112
Query: 152 RFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTD 211
F + R I +AV+N + A AR+ +D +G + +L K
Sbjct: 113 VFHEITKRAITEAVENPKTLSTDLIHAQQARRALDYLVG---FKLSPLLWKKIRRG---- 165
Query: 212 DRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG--TATFSWMRGHLF 269
LS G Q P L +VER EI+ E +E+WTI + ++E+ +A + + G
Sbjct: 166 -----LSAGRVQSPALRMIVERELEIERFEVQEYWTIEAAIQTEDQALSARLTHLAGEKL 220
Query: 270 DYTSAVIIYEMCVQEPTAT----------VTKVRQQEKLKYPPYPLSTIELEKRASRYFR 319
+ S I+ E Q + V +V ++E+ + P P +T L++ A+R
Sbjct: 221 EQFS--IVNEAQAQATRQSLLDQARGKLQVVRVEERERKRNPAAPFTTSTLQQEAARKLG 278
Query: 320 MSSEHTMKVAEDLYQA--------GFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGP 369
++ TM VA+ LY+ G I+Y RT++ + + L +++ + G D P
Sbjct: 279 FTTRRTMTVAQQLYEGIDLGGEAVGLITYMRTDSVNLAQEAVQELRALIESRYGK-DNLP 337
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK-FSSGES---RWSQDHYKLYELVVRHF 425
RL + +AH I PT F + ES + D +KLY L+ +
Sbjct: 338 AQPRLYK---------TKSKNAQEAHEAIRPTSAFRTPESVKAHLTPDQFKLYSLIWKRS 388
Query: 426 LACVSQPAVGAETIVEI--NIAGEVFSTSGRVILAKNYLDVYRF------ESWGGLVIPT 477
+AC A V+ A +F +G ++ ++ VYR E + +P
Sbjct: 389 VACQMVHATLNTVTVDFACGSADNLFRATGSTVIHPGFMSVYREGRDDMPEESDEIYLPK 448
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
V GQ+ +T T PPP +EA L+ +++ GIG +T I L R Y ++
Sbjct: 449 LVEGQEVDLKDVTPSQHFTEPPPRYTEASLVKALEEYGIGRPSTYATIISTLQQRHY-VE 507
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
N RF PT++G + + N + +E D+ VS G K ++
Sbjct: 508 LENKRFRPTDLGRVVNKFLTEHFNRYVDYNFTANLEDDLDAVSRGEKDWIPLMREFWGPF 567
Query: 598 KACF--LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
A D LK+ + +A E +CG S + ++ R+G
Sbjct: 568 HALIGEKDESLKRADVT---------------HEAIDEKCPECG----SPLSIRLGRNGR 608
Query: 656 LMVGCLAFPQCRNAVWLPGSVSE----AAVTTNTCNSC 689
VGC +PQC+ L G SE V C C
Sbjct: 609 F-VGCTNYPQCKYTRNLAGKESEQTEPEVVEGRQCPKC 645
>gi|254494745|ref|ZP_05107916.1| DNA topoisomerase I [Neisseria gonorrhoeae 1291]
gi|226513785|gb|EEH63130.1| DNA topoisomerase I [Neisseria gonorrhoeae 1291]
Length = 768
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 147/599 (24%), Positives = 261/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV +
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVAHPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPDEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY ES G +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDGKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRQWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|385336811|ref|YP_005890758.1| DNA topoisomerase I [Neisseria gonorrhoeae TCDC-NG08107]
gi|317165354|gb|ADV08895.1| DNA topoisomerase I [Neisseria gonorrhoeae TCDC-NG08107]
Length = 768
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 147/599 (24%), Positives = 261/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV +
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVAHPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPNEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY ES G +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDGKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRQWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|393720521|ref|ZP_10340448.1| DNA topoisomerase I subunit omega [Sphingomonas echinoides ATCC
14820]
Length = 858
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 157/629 (24%), Positives = 256/629 (40%), Gaps = 53/629 (8%)
Query: 82 SCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRA 141
S DP D + + DK K + + A+ L+L D DREGE I++ V EV R
Sbjct: 41 SVDPEDGFAMEWENYA--DKAKQLKAITDLAKTADRLILATDPDREGEAISWHVQEVLRN 98
Query: 142 VNC-HLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTML 200
++R F+A+ + +A+Q+ + + DA AR+ +D +G + +
Sbjct: 99 RKALPKDVQRVTFNAITKATVTEAMQHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRK 158
Query: 201 LKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI--NCSHKSEEGT 258
L S G Q L +V R EI+A +E+W++ + H
Sbjct: 159 LPGAK------------SAGRVQSVALRLIVSREREIEAFRPQEYWSVAADMEHDGTPFQ 206
Query: 259 ATFSWMRGHLFDYTS-----AVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKR 313
A G D S + V+ TV V + + PP P +T L++
Sbjct: 207 ARLVQFEGKKLDRLSIGEEGTAKRAKAAVESGLFTVQTVEVKPATRNPPPPFTTSTLQQE 266
Query: 314 ASRYFRMSSEHTMKVAEDLYQAGFISYPRT---ETDSFSSGTNLHGIVQEQIGHPDWGPY 370
ASR S++HTM++A+ LY+ G I+Y RT + DS + H + Y
Sbjct: 267 ASRKLGFSADHTMRIAQGLYEDGAITYMRTDGVQMDSSAISAARHAVADR---------Y 317
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
+ +++ + AH I PT FS ++ DH +LY+L+ + LA
Sbjct: 318 DASYVPDKPRVYQTKAKNAQE--AHEAIRPTDFSKDKA-GGGDHARLYDLIWKRALASQM 374
Query: 431 QPAVGAETIVEI--NIAGEVFSTSGRVILAKNYLDVYR-----FESWGGLVIPTYVHGQQ 483
A T VE+ +G+V+L YL +Y + +P G
Sbjct: 375 ASARLERTTVELADGTGDTALRATGQVMLFPGYLALYEEGSDDTQDEDAKRLPRLREGDA 434
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRF 543
+T + T+PPP SEA L+ +++ GIG +T IK L DR Y + N F
Sbjct: 435 PAKLGVTAEQHFTQPPPRFSEASLVKRLEELGIGRPSTYASIIKTLKDRAYVRVEKNRFF 494
Query: 544 APTNIGEALVMGYDDMGYELWKP-NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
A + LV + + +E + + + +E ++ EVS G VL + K
Sbjct: 495 AEES--GRLVTAFLERFFEKYVGYDFTAGLEDELDEVSGGRAQWQAVLEAFWKDFKPRTA 552
Query: 603 DARLKKVKLLEA-MGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
+K + A + F E + +A G R C +C + + L+ + G V C
Sbjct: 553 QVMEQKPSEVTAELDKFLEPYLF--PAKADGSDPRLCPLCHKGQLALRGGKFGAF-VACS 609
Query: 662 AFPQCRNAVWL--PGSVSEAAVTTNTCNS 688
+P+C+ PG EA T T +
Sbjct: 610 NYPECKYTRRFGQPGGEGEADATPETLGN 638
>gi|337294185|emb|CCB92169.1| DNA topoisomerase 1 [Waddlia chondrophila 2032/99]
Length = 854
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 164/686 (23%), Positives = 282/686 (41%), Gaps = 104/686 (15%)
Query: 60 LMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
++ S GH+ +L K D + + P +PE +K I +L++ A+ +
Sbjct: 26 ILESSVGHIRDLP-----EKEFGIDIENEFE-PKYVTMPEKEKVIN-SLKKAAKNVDTVY 78
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
L D DREGE IA+ ++ + + V +R F+++ + +A+Q D + DA
Sbjct: 79 LSPDPDREGEAIAWHIMNI---LPKGTVYKRISFNSITKDAVLKALQFPRDIDMALVDAQ 135
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
AR+ +D +G ++ + N I R+ +S G Q L VV+R EI+A
Sbjct: 136 QARRLLDRIVG-----YKISPILNRRIQR---GRDGGVSAGRVQSVALKLVVDREAEIEA 187
Query: 240 HESEEFWTINCSHKSEEGTATFS--------------WMRGHLF-----DYTSAVIIYEM 280
E+W + K+ + +F + G F T+ +I M
Sbjct: 188 FIPVEYWNLAAILKAARDSRSFKANLYSVDGQRVEKEAVEGKNFFLIPNKETADQVIERM 247
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
Q TV V ++EK + P P T L++ ASR+ SS TM +A+ LY+
Sbjct: 248 --QSGPFTVQTVVKKEKKRNPVPPFITSTLQQEASRHHGYSSAKTMNIAQSLYEGIDLGN 305
Query: 336 ----GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHD 391
G I+Y R TDS V++ I Y + L +A ++ +
Sbjct: 306 EGAEGLITYMR--TDSVRVAPEALSEVRKHIKE----VYGKDFLPESAKMYTTKKAA--- 356
Query: 392 DKAHPPIHPTKFSSG----ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINI-AG 446
AH I PT + +S +++ Y LY+L+ + F+A PA+ +I+ +G
Sbjct: 357 QDAHEAIRPTNLAHTPEHVKSYLTREQYMLYKLIWQRFVASQMNPAIYDTVSADISAGSG 416
Query: 447 EVFSTSGRVILAKNYLDVYR------FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
+ +G VI + +L VY + G ++P G + LT D TRPPP
Sbjct: 417 IIIRATGSVIKFQGFLAVYEEMEDDVETAEDGKILPPLEEGMELTLLELTSDQAFTRPPP 476
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ ++K+GIG +T + K+ R Y IK+ N+R PT +G + +
Sbjct: 477 RFTEASLVKELEKSGIGRPSTYASIMNKIQGREYTIKE-NSRLKPTELGRVIAQMLETNF 535
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM--------KACFLDARLKKVKLL 612
E+ + ME D++ ++ K ++ + + K F+ L +
Sbjct: 536 PEIMNIGFTAQMEDDLELIASNEKDWKKLIKDFWESFYPTLEEAEKNAFVPKILTDIDCP 595
Query: 613 EAMGIFFERWSGG-------------------------EDQQAAGEVVRQCGICQESNMV 647
E + W ED ++C +CQ S M
Sbjct: 596 ECGSKLQKVWFKSKYFYGCSSYPDCSYSAPAEEILFNKEDYAEGFNWEQKCPLCQ-SEMK 654
Query: 648 LKKSRDGNLMVGCLAFPQCRNAVWLP 673
++ R G + GC +P+CR + +P
Sbjct: 655 VRHGRFGAFL-GCTKYPECRGIINIP 679
>gi|268597810|ref|ZP_06131977.1| DNA topoisomerase I [Neisseria gonorrhoeae FA19]
gi|268604657|ref|ZP_06138824.1| DNA topoisomerase I [Neisseria gonorrhoeae PID1]
gi|268551598|gb|EEZ46617.1| DNA topoisomerase I [Neisseria gonorrhoeae FA19]
gi|268588788|gb|EEZ53464.1| DNA topoisomerase I [Neisseria gonorrhoeae PID1]
Length = 768
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 147/599 (24%), Positives = 261/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV +
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVAHPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPDEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY ES G +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDGKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRRWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|268593751|ref|ZP_06127918.1| DNA topoisomerase I [Neisseria gonorrhoeae 35/02]
gi|268683115|ref|ZP_06149977.1| DNA topoisomerase I [Neisseria gonorrhoeae PID332]
gi|268547140|gb|EEZ42558.1| DNA topoisomerase I [Neisseria gonorrhoeae 35/02]
gi|268623399|gb|EEZ55799.1| DNA topoisomerase I [Neisseria gonorrhoeae PID332]
Length = 768
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 147/599 (24%), Positives = 261/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV +
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVAHPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPDEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY ES G +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDGKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRRWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|268600053|ref|ZP_06134220.1| DNA topoisomerase I [Neisseria gonorrhoeae MS11]
gi|268584184|gb|EEZ48860.1| DNA topoisomerase I [Neisseria gonorrhoeae MS11]
Length = 768
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 146/599 (24%), Positives = 259/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV N
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVANPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPDEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVYRFESWGGLV-----IPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY S +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDSKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRRWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|297621926|ref|YP_003710063.1| DNA topoisomerase I [Waddlia chondrophila WSU 86-1044]
gi|297377227|gb|ADI39057.1| DNA topoisomerase I [Waddlia chondrophila WSU 86-1044]
Length = 854
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 164/686 (23%), Positives = 281/686 (40%), Gaps = 104/686 (15%)
Query: 60 LMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLV 119
++ S GH+ +L K D + + P +PE +K I +L++ A+ +
Sbjct: 26 ILESSVGHIRDLP-----EKEFGIDIENEFE-PKYVTMPEKEKVIN-SLKKAAKNVDTVY 78
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
L D DREGE IA+ ++ + + V +R F+++ + +A+Q D + DA
Sbjct: 79 LSPDPDREGEAIAWHIMNI---LPKGTVYKRISFNSITKDAVLKALQFPRDIDMALVDAQ 135
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
AR+ +D +G ++ + N I R+ +S G Q L VV+R EI+A
Sbjct: 136 QARRLLDRIVG-----YKISPILNRRIQR---GRDGGVSAGRVQSVALKLVVDREAEIEA 187
Query: 240 HESEEFWTINCSHKSEEGTATFS--------------WMRGHLF-----DYTSAVIIYEM 280
E+W + K+ + +F + G F T+ +I M
Sbjct: 188 FIPVEYWNLAAILKAARDSRSFKANLYSVDGQRVEKEAVEGKNFFLIPNKETADQVIERM 247
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
Q TV V ++EK + P P T L++ ASR+ SS TM +A+ LY+
Sbjct: 248 --QSGPFTVQTVVKKEKKRNPVPPFITSTLQQEASRHHGYSSAKTMNIAQSLYEGIDLGN 305
Query: 336 ----GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHD 391
G I+Y R TDS V++ I Y + L +A ++ +
Sbjct: 306 EGAEGLITYMR--TDSVRVAPEALDEVRKHIKE----VYGKDFLPESAKMYTTKKAA--- 356
Query: 392 DKAHPPIHPTKFSSG----ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGE 447
AH I PT + +S +++ Y LY+L+ + F+A PA+ +I+ E
Sbjct: 357 QDAHEAIRPTNLAHTPEHVKSYLTREQYMLYKLIWQRFVASQMNPAIYDTVSADISAGSE 416
Query: 448 -VFSTSGRVILAKNYLDVYR------FESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
+ +G VI + +L VY + G ++P G + LT D TRPPP
Sbjct: 417 IIIRATGSVIKFQGFLAVYEEMEDDVETAEDGKILPPLEEGMELTLLELTSDQAFTRPPP 476
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ ++K+GIG +T + K+ R Y IK+ N+R PT +G + +
Sbjct: 477 RFTEASLVKELEKSGIGRPSTYASIMNKIQGREYTIKE-NSRLKPTELGRVIAQMLETNF 535
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM--------KACFLDARLKKVKLL 612
E+ + ME D++ ++ K ++ + + K F+ L +
Sbjct: 536 PEIMNIGFTAQMEDDLELIASNEKDWKKLIKDFWESFYPTLEEAEKNAFVPKILTDIDCP 595
Query: 613 EAMGIFFERWSGG-------------------------EDQQAAGEVVRQCGICQESNMV 647
E + W ED ++C +CQ S M
Sbjct: 596 ECGSKLQKVWFKSKYFYGCSSYPDCSYSAPAEEILFNKEDYAEGFNWEQKCPLCQ-SEMK 654
Query: 648 LKKSRDGNLMVGCLAFPQCRNAVWLP 673
++ R G + GC +P+CR + +P
Sbjct: 655 VRHGRFGAFL-GCTKYPECRGIINIP 679
>gi|268683221|ref|ZP_06150083.1| DNA topoisomerase I [Neisseria gonorrhoeae SK-92-679]
gi|268623505|gb|EEZ55905.1| DNA topoisomerase I [Neisseria gonorrhoeae SK-92-679]
Length = 768
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 147/599 (24%), Positives = 261/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV +
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVAHPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPNEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY ES G +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDGKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRRWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELNETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|268602395|ref|ZP_06136562.1| DNA topoisomerase I [Neisseria gonorrhoeae PID18]
gi|291042752|ref|ZP_06568493.1| DNA topoisomerase I [Neisseria gonorrhoeae DGI2]
gi|268586526|gb|EEZ51202.1| DNA topoisomerase I [Neisseria gonorrhoeae PID18]
gi|291013186|gb|EFE05152.1| DNA topoisomerase I [Neisseria gonorrhoeae DGI2]
Length = 768
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 146/599 (24%), Positives = 259/599 (43%), Gaps = 73/599 (12%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNC--HLVLRRARFSALIDREIHQAVQNLV 169
A+ + + L D DREGE I++ ++E+ ++ ++ +R F + + AV N
Sbjct: 71 AKEAENIYLATDPDREGEAISWHLLEILKSKRGLKNIKPQRVVFHEITKNAVLDAVANPR 130
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGF 229
+ DA AR+ +D +G + + +L K LS G Q P L
Sbjct: 131 EIEMDLVDAQQARRALDYLVGFNLS---PLLWKKIRRG---------LSAGRVQSPALRL 178
Query: 230 VVERYWEIQAHESEEFWTINC-SHKSEEG-TATFSWMRG---HLFDY----TSAVIIYEM 280
+ ER EI+A E++E+WT++ SHK TA + G FD A ++ E+
Sbjct: 179 ICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGAKLEQFDLPDEAAQADVLKEL 238
Query: 281 CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA----- 335
+E A VT + ++++ + P P +T +++ A R +++ TM+ A+ LY+
Sbjct: 239 EGKE--AVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGFTTDRTMRTAQQLYEGIDVGQ 296
Query: 336 ---GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
G I+Y RT++ + + T + ++ +IG + L AA ++
Sbjct: 297 GAIGLITYMRTDSVNLADEALTEIRHYIENKIG--------KEYLPSAAKQYKTKSKNAQ 348
Query: 391 DDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
+ AH I PT S + S D +KLY+++ + +AC PA +T V+I +
Sbjct: 349 E--AHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTPAKFDQTTVDITVGK 406
Query: 447 EVFSTSGRVILAKNYLDVYRFESWGGLV-----IPTYVHGQQFIPTTLTLDSGVTRPPPL 501
VF +G+V +L VY S +P G + L + T PPP
Sbjct: 407 GVFRVTGQVQTFAGFLSVYEESSDDEESEDSKKLPEMSEGDKLPVDKLYGEQHFTTPPPR 466
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T I L DR Y + RF PT+ G+ + +
Sbjct: 467 YNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLE-QKRFMPTDTGDIVNKFLTEHFA 525
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
+ + + +E + E++ G + V+ F +K+V+ E GI +
Sbjct: 526 QYVDYHFTAKLEDQLDEIADGKRRWIPVMDK--------FWKPFIKQVE--EKEGIERAK 575
Query: 622 WSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
++ E+ C C E + +K + G V C +P+C + + EAA
Sbjct: 576 FT-------TQELDETCPKCGEHKLQIKFGKMGRF-VACAGYPECSYTRNVNETAEEAA 626
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
QC C++ N+V +KSR G L C +P C A W P E
Sbjct: 686 QCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAEE 727
>gi|407774702|ref|ZP_11121999.1| DNA topoisomerase I subunit omega [Thalassospira profundimaris
WP0211]
gi|407282184|gb|EKF07743.1| DNA topoisomerase I subunit omega [Thalassospira profundimaris
WP0211]
Length = 882
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 151/598 (25%), Positives = 257/598 (42%), Gaps = 68/598 (11%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC------RAVNCHLVLRRARFSALIDR 159
K + AR + L D DREGE I++ ++EV R + H V+ F + +
Sbjct: 63 KEIASAARDSDTIYLATDPDREGEAISWHILEVLEQKKLLRGRDVHRVV----FHEITKK 118
Query: 160 EIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSY 219
+ +A+ N + NQ DA AR+ +D +G + + L S
Sbjct: 119 AVTEAIANPRELNQELVDAYLARRALDYLVGFNLSPVLWRKLPGSR------------SA 166
Query: 220 GPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG--TATFSWMRGHLFDY-----T 272
G Q L + ER EI+A + +E+W++ EG +A + + G D
Sbjct: 167 GRVQSVALRLICEREIEIEAFKPDEYWSLEAGFAVPEGKFSARLTHLNGEKLDKLALGNE 226
Query: 273 SAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDL 332
SA I + V+ + TV+KV +++ + P P +T L++ ASR ++ TM++A+ L
Sbjct: 227 SAAKIAKEKVESRSYTVSKVERKDVKRRPQPPFTTSTLQQEASRKLGFGAKRTMQLAQRL 286
Query: 333 YQA--------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
Y+ G I+Y RT D+ + IG Y + L A + N
Sbjct: 287 YEGVDIGGETVGLITYMRT--DAVVLSQEALAAARRLIGKD----YGDQYLPANARSFAN 340
Query: 385 PGSGGHDDKAHPPIHPTKFSSGESRWS----QDHYKLYELVVRHFLACVSQPAVGAETIV 440
+ AH + PT + S +D LY L+ + +AC + A + V
Sbjct: 341 KAKNAQE--AHEAVRPTDLFRRPEQVSRHLDKDQLALYTLIWKRTVACQMEDARFDQVAV 398
Query: 441 EI--NIAGEVFSTSGRVILAKNYLDVYR------FESWGGLVIPTYVHGQQFIPTTLTLD 492
++ N V +G V+ +L +Y+ E +P GQ+ +++D
Sbjct: 399 DLSSNDNHVVLRANGSVVKFDGFLKLYQEGKDDEAEDENDRRLPPLKEGQKPDLGKVSID 458
Query: 493 SGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
T+PPP +EA L+ M++ GIG +T I L DR Y + + RF + G L
Sbjct: 459 QHFTQPPPRYTEASLVKKMEELGIGRPSTYASIISVLQDRNYVLLE-RRRFVAQDRGR-L 516
Query: 553 VMGYDDMGYELW-KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR-LKKVK 610
V + +E + + N + +E+ + EVS+G DVL + + K +A+ LK
Sbjct: 517 VTAFLSKFFERYVQYNFTADLENQLDEVSMGKLEWKDVLKDFWKSFKGNVDEAKELKITD 576
Query: 611 LLEAMGIFFERW--SGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
+L+A+ + E + ED G +C C + + LK + G + GC +P+C
Sbjct: 577 VLDALQVMLENYLFPPRED----GTDPHKCPKCTDGTLSLKLGKFGAFL-GCSNYPEC 629
>gi|197294676|ref|YP_001799217.1| Topoisomerase IA [Candidatus Phytoplasma australiense]
gi|171854003|emb|CAM11968.1| Topoisomerase IA [Candidatus Phytoplasma australiense]
Length = 655
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 158/629 (25%), Positives = 255/629 (40%), Gaps = 103/629 (16%)
Query: 105 KKTLEE---EARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREI 161
KKTL E + + + + L D DREGE IA+ + +V +N + R F + +
Sbjct: 63 KKTLVESLIKKTKNKEIFLATDPDREGEAIAWHLSKVLN-LNPQMA-NRIVFREITKEVV 120
Query: 162 HQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGP 221
+A+QN ++ + + R+ +D IG +R L++ S G
Sbjct: 121 LKALQNPRTVDELLVFSQETRRMLDRIIGFKLSR----LVRRIKSQSA----------GR 166
Query: 222 CQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHL-------FDYTSA 274
Q L +V+ EI + EE+ I TA F + + A
Sbjct: 167 VQSVALKLIVDLEKEINSFVPEEYNLI---------TAFFPFFQAEYQNPNNKKIKSAEA 217
Query: 275 VIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ 334
+ I +P V K++Q E P PL T L++ A M+S TM+VA+ LY+
Sbjct: 218 LGIVAKITNKP-FIVKKIKQTETFSKPKKPLITSTLQQEAINNLYMTSNQTMRVAQKLYE 276
Query: 335 A--------GFISYPRTETDSFSS--GTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
G I+Y RT++ FS + +++E+ G + A +N
Sbjct: 277 GIDIEGESIGLITYMRTDSPRFSEVFVKDAQKLIKEKYGQ-----------KYLAVFKQN 325
Query: 385 PGSGGHDDKAHPPIHPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIV 440
+ D AH I PT S S S + YKLY+L+ + LA + +PA+ + V
Sbjct: 326 QKNKAQD--AHEAIKPTDLSKTPESLMSYLDKYEYKLYDLIYKRSLASLMKPAIFQKNQV 383
Query: 441 EINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
+ F T G + Y + + ++ +IPT+ + + P + T P
Sbjct: 384 FFEVEKHSFLTEGLIKTFDGYQKILK-DNLQDKIIPTFNLNESYFPEKIETFQKFTTPQA 442
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
SEA L+ ++K IG +T I L RFY + RF PT G + +
Sbjct: 443 RFSEATLIKTLEKLNIGRPSTYSQIIFTLKKRFY-VDMIEKRFQPTEQGILTIQNLELFF 501
Query: 561 YELWKPNLRSMMESDMKEVSVG---NKSKADVL-ANCLQQMKACFLDARLKKVKLLEAMG 616
+ + MESD+ +++ G NK N LQ + D +L+K+K +E
Sbjct: 502 KQFLDYQYTAQMESDLDKIASGLVDNKQLMQTFYTNFLQLYQIA--DQKLEKIKPIET-- 557
Query: 617 IFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV 676
DQ +C +C E N+++KKS G+ + GC FP C+N P V
Sbjct: 558 ----------DQ--------KCNLCNEGNLLIKKSHYGSFL-GCSRFPDCKNTS--PWKV 596
Query: 677 SE---------AAVTTNTCNSCTPGPVYL 696
E + T CN C G + +
Sbjct: 597 QEKNKSKDSDHSNQTDQKCNLCNEGNLLI 625
>gi|255307290|ref|ZP_05351461.1| DNA topoisomerase III [Clostridium difficile ATCC 43255]
Length = 706
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 159/622 (25%), Positives = 275/622 (44%), Gaps = 75/622 (12%)
Query: 10 VLNVAEKPSVAKSVAGIL-SKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
+L +AEKPSV + +A +L SKN E N I G P +++ T GHL
Sbjct: 4 ILVLAEKPSVGRDIAKVLGSKN----------------EKNGYIEG-PKYVI-TWALGHL 45
Query: 69 MEL----DFDERYRKWHSCD----PADLYHAPVRKHVPEDKKDIKKTLEEEARR--CQWL 118
+ L + ERY+ W D P L ++K + T++ + R +
Sbjct: 46 VTLADPESYGERYKSWSLEDLPILPKYLKTVVIKKSGKQFN-----TVKSQMNRNDIDEI 100
Query: 119 VLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---F 175
V+ D REGE +A +IE + ++R S+ D+ I L ++ +
Sbjct: 101 VIATDAGREGELVARWIIEKSQ---VKKPIKRLWISSSTDKAIKDGFAKLRSGKEYENLY 157
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
A+ AR E D IG + TR ++T N LS G Q PTL +++R
Sbjct: 158 YSAI-ARAEADWIIGINATR------------ALTTKYNAQLSCGRVQTPTLAMLLKREE 204
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT---VTKV 292
EI+ + +E++ + F W + T + E +++ +++V
Sbjct: 205 EIRNFKPKEYYGLELIATKGNSDIKFIWNDKNNNSSTFSKEKIESTLKKVKGVDIKISEV 264
Query: 293 RQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-GFISYPRTETDSFSSG 351
+ K KY P EL++ A++ F S++ T+ + + LY+ ++YPRT++ +S
Sbjct: 265 NKSYKKKYSPALYDLTELQRDANKMFGFSAKETLSIMQKLYEHHKVLTYPRTDSRYLTS- 323
Query: 352 TNLHGIVQEQIGHPDWGPYAQ---RLLDHAAGLWRNPGSGGHDDKA-HPPIHPTKFSSGE 407
++ G ++++I + Y++ RLL + + N + H I PT+
Sbjct: 324 -DIVGTLKDRIKAVNISDYSKICNRLL--KSNIIANKSFVDNSKVTDHHAIIPTEQKVFM 380
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL----AKNYLD 463
S +S K+Y LVV+ FLA +S P +T + + GE+F G ++ ++Y D
Sbjct: 381 SDFSDKERKIYNLVVKRFLAVLSPPFEYEQTTISATVEGEIFKAKGNKVINLGWKESYKD 440
Query: 464 VYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMH 523
+ + + IP + L + SG T PPP L+E LL+ M+K +GT AT
Sbjct: 441 IEDEDEYES--IPNVLEKDVLKVKGLKITSGKTNPPPYLNEGTLLTAMEKNVLGTVATRA 498
Query: 524 DHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
D I+KL + F ++ N T+ G L+ D + +L P L + E + ++S G
Sbjct: 499 DIIEKLFNSFL-MEKKNKDIYITSKGRQLL---DLVPVDLKTPELTASWEKKLLDISKGK 554
Query: 584 KSKADVLANCLQQMKACFLDAR 605
SK + + K L+ +
Sbjct: 555 LSKNTFINDMKDYSKDIVLEVK 576
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,172,327,508
Number of Sequences: 23463169
Number of extensions: 560539025
Number of successful extensions: 1218138
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3984
Number of HSP's successfully gapped in prelim test: 5679
Number of HSP's that attempted gapping in prelim test: 1178239
Number of HSP's gapped (non-prelim): 15174
length of query: 807
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 656
effective length of database: 8,816,256,848
effective search space: 5783464492288
effective search space used: 5783464492288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)