BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046997
(807 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/755 (46%), Positives = 485/755 (64%), Gaps = 26/755 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK++SG D +LYE +VRHFLAC
Sbjct: 391 AFAQTILERGGPTPRN---GSKSDQAHPPIHPTKYTSG---LQGDDRRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++
Sbjct: 505 VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ + ER + ++ A E VR+C C + +MVLK + G + C+ FP
Sbjct: 625 KKLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVW P SV EA+ + C+ C P PVY ++ KF++ +PP + +GCIGGCDET
Sbjct: 684 ECRSAVWFPDSVLEASRDNSVCSVCQPPPVYRLKLKFKRGSLPPAMPLEFVGCIGGCDET 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
L+++ + R P A Q S H Q
Sbjct: 744 LKEIFGL-----------RFPRALPRASQPSGHLQ 767
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/793 (44%), Positives = 502/793 (63%), Gaps = 29/793 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL
Sbjct: 35 KVLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHL 93
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
+ DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREG
Sbjct: 94 LAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREG 153
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLR
Sbjct: 154 ENIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
IGA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 214 IGAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRI 270
Query: 249 NCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
+H ++G F+W R LF++T+ +++Y++CV++P ATV +VR + K K+ P L T+
Sbjct: 271 KVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTV 330
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWG 390
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 391 AFAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNN---LQGDEQRLYEFIVRHFLAC 444
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T
Sbjct: 445 CSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPST 504
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++
Sbjct: 505 VEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHL 564
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 565 GMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKA 624
Query: 609 VKLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP
Sbjct: 625 KKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFP 683
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724
+CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+T
Sbjct: 684 ECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDT 743
Query: 725 LRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP--SQFSGS 782
LR+++++ +G P R P+ Q N +M +S P S+ +GS
Sbjct: 744 LREILDLRFSGG--PPRASQPSGRLQANQSLN----------RMDNSQHPQPADSRQTGS 791
Query: 783 RNARANGMNPQSG 795
A A + P +
Sbjct: 792 SKALAQTLPPPTA 804
>sp|Q8T2T7|TOP3_DICDI DNA topoisomerase 3 OS=Dictyostelium discoideum GN=top3 PE=3 SV=1
Length = 828
Score = 597 bits (1539), Expect = e-169, Method: Compositional matrix adjust.
Identities = 315/712 (44%), Positives = 440/712 (61%), Gaps = 41/712 (5%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTGHL 68
+LNVAEKPS AK +A ILS N+ +REG S+YNK+++F Y+I C M TSVTGHL
Sbjct: 5 ILNVAEKPSAAKEIAAILS-NKRATVREGFSKYNKLWDFKYNILNFNDCEMTFTSVTGHL 63
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
ME+D E+++ W SCDP L+ AP+RK VP DK+ +KKTLE E ++ L+LWLDCDREG
Sbjct: 64 MEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREIKKADILILWLDCDREG 123
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENIAFEV+EVC+ RA FSA+I REI +A +NL PN+ + AVD R EIDLR
Sbjct: 124 ENIAFEVLEVCKNAKKKFEFYRAHFSAIIPREIDRACKNLAKPNEKDSIAVDTRMEIDLR 183
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDR---------------------NLVLSYGPCQFPTL 227
IGA+FTRFQT+ LK F I S +D++ ++SYGPCQFPTL
Sbjct: 184 IGAAFTRFQTLYLKKFKIISNSDNQPKTTTPANGNILNNSNNNSSGKEIISYGPCQFPTL 243
Query: 228 GFVVERYWEIQAHESEEFWTINCSHKSEEGTA------TFSWMRGHLFDYTSAVIIYEMC 281
GFVVERY+ I + E+FW ++ H+ + ++ TFSW R LFDYT+A I+YE C
Sbjct: 244 GFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLFDYTAAFILYEKC 303
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341
+ ATV V +E +Y P PL+TIEL+K AS+ R+SS TM+ AE+LY G ISYP
Sbjct: 304 LDNTEATVVDVTSKES-RYRPVPLTTIELQKAASKKLRISSVQTMQYAEELYTKGLISYP 362
Query: 342 RTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT 401
RTETDSF +GT+L G++ Q +P+WG YA RL+++ ++ P SG ++D +HPPIHPT
Sbjct: 363 RTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVY--PKSGKNNDNSHPPIHPT 420
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY 461
++G S + K+Y+ + R FLAC S+ +V A T V I+I GE FS +G ++L Y
Sbjct: 421 SSATG---LSGNLKKIYDFITRRFLACCSEESVFANTTVTIDIQGERFSETGTMVLKLGY 477
Query: 462 LDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDAT 521
L+VY F+ +IPTY G++F P + L G T P ++EA+LL+ MD IGTDAT
Sbjct: 478 LEVYPFDKRNDKLIPTYQKGERFTPKRIDLTKGTTVAPHYITEAELLTAMDNNKIGTDAT 537
Query: 522 MHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSV 581
M HI+ + DRFY K+ + +F P+N+G +LV Y+ MG+E KPNLR+ +E+D+ ++S
Sbjct: 538 MATHIQTIQDRFYVKKNESNQFVPSNLGVSLVASYELMGFEFSKPNLRAAIEADVDKISR 597
Query: 582 GNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERW--SGGEDQQAAGEVVRQCG 639
G K+K +VL + +++ K + A + ++E GGE + + R CG
Sbjct: 598 GQKTKQEVLLSTIEKYKQLYQLANQNINCFDRSFREYYEPADPKGGEFRVLVSQFSR-CG 656
Query: 640 ICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP--GSVSEAAVTTNTCNSC 689
C M K ++ L PQC + LP G +S+ + +C
Sbjct: 657 KCN-GKMQYKSDQNPEAPKRILFCPQCIDTFDLPKNGDISQLVTSMGVPQNC 707
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 306/714 (42%), Positives = 421/714 (58%), Gaps = 26/714 (3%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLM 61
A G+ + LNVAEK AK++AG+LS R REG S YNK+++F +RGQ M+M
Sbjct: 20 ANPGQAMKYLNVAEKNDAAKTIAGLLSNGAAQR-REGYSVYNKVFDFEAPVRGQNAKMVM 78
Query: 62 TSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLW 121
TSV+GH+M+L F Y+ W + DP L+ APV+K V D + IK+TLE E R CQ L++W
Sbjct: 79 TSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIW 138
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DCDREGENI +E+I+VCRA+ ++ + RA FS + + +A+Q L P++ +DAVD
Sbjct: 139 TDCDREGENIGYEIIDVCRAIKPNISVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDV 198
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E+DLR GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A
Sbjct: 199 RTELDLRTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFV 255
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLK 299
SE FW I H ++ T F+W R LFD + +C+ EP A V V + K K
Sbjct: 256 SEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVKPKHK 315
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
+ P PL T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V+
Sbjct: 316 WRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALAPLVE 375
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
Q GH DWG +AQR+++ NP +G D+AHPPIHPTK + + ++YE
Sbjct: 376 MQTGHRDWGAFAQRVIEWGP----NPRNGNKSDQAHPPIHPTKLAEN---LQGNEARVYE 428
Query: 420 LVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYV 479
LVVRHFLACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y
Sbjct: 429 LVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYE 488
Query: 480 HGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA 539
+GQ+F PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y
Sbjct: 489 NGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLD 548
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
P IG L GYD M L KP LR+ E D+K + G K VL + + K
Sbjct: 549 KGFLVPGVIGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLTEQIAKYKQ 608
Query: 600 CF---------LDARL--KKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVL 648
+ +DA++ + + A E G + + QC C E+ + L
Sbjct: 609 AYQQITDKITAMDAKISARINETPAANSAVQEGADGSAPSHGIIQSIFQCPKCNEAPLAL 668
Query: 649 K-KSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKF 701
K K +GC FP C+NAVWLP +A+V C +C G +++F+
Sbjct: 669 KPKKNQQGWYIGCNNFPDCKNAVWLPTECKDASVLDECCPTCGDG-YRMLKFRL 721
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust.
Identities = 269/612 (43%), Positives = 373/612 (60%), Gaps = 7/612 (1%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK VAK VA ILS R REGRS++NKIY N + GQ + +TSV+GH+M
Sbjct: 5 LFVAEKNDVAKGVAAILSNGTANR-REGRSKFNKIYTLNTELFGQQTAISVTSVSGHMMN 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F E W + +L+ APVR V + K I++TL E+A+R LV+W DCDREGE
Sbjct: 64 FQFHENMSNWQTASMVELFRAPVRHVVTPEMKLIEQTLREQAQRHDILVVWTDCDREGEA 123
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E+++VCR N L + RARFS + I +A +NL+ ++ AVD R E+DLRIG
Sbjct: 124 IGAEIVKVCRDSNRRLDIFRARFSEITKAAITRAARNLIRLDEKTVAAVDCRSELDLRIG 183
Query: 191 ASFTRFQTMLLKNFHIDSV-TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
++FTR QT+ L+N D + +D + V+SYG CQFPTLGFV +RY I+ SE FW +
Sbjct: 184 SAFTRLQTLHLRNRFRDLLGQNDTSQVISYGSCQFPTLGFVTDRYKMIENFVSEPFWKLI 243
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H E F W R LFD + I+++ C + A V KV ++ K K+ P L T+E
Sbjct: 244 VEHTRESHKVEFLWDRNRLFDRDTVDILHDECKETKEAHVEKVAKKPKSKWRPQALDTVE 303
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK RMS++ TM+VAE LY GFISYPRTET+ F +G NL +VQ+Q WG
Sbjct: 304 LEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETNKFPAGLNLTPLVQQQTQSNIWGD 363
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A +L + NP +G D+AHPPIHP KF+ + + D +K+YELVVRHFLACV
Sbjct: 364 FANEVLQNGV----NPRNGRKSDEAHPPIHPLKFTE-KHQLQGDDWKVYELVVRHFLACV 418
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET+V + + E F SG I YL VY +E WG ++PTY G++F L
Sbjct: 419 SQDAQGEETMVNLTVGTEKFHASGLRIRDMGYLKVYVYEKWGNRLLPTYTEGERFTDFEL 478
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T+ P L+EADL+S MDK GIGTDAT +HI+K+ R Y + + P+ +G
Sbjct: 479 KIGDGKTQAPDFLTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLG 538
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
ALV GYDDMG+ + KP+LR+ +E +KE+ G + K +VL + + +A F+++ K
Sbjct: 539 LALVDGYDDMGFAMSKPDLRANLEIGLKEICDGRRQKQEVLDEQIGKYRAIFVESERKIG 598
Query: 610 KLLEAMGIFFER 621
L +++ + ++
Sbjct: 599 VLSQSLQRYLDK 610
>sp|O60126|TOP3_SCHPO DNA topoisomerase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top3 PE=1 SV=2
Length = 622
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 254/605 (41%), Positives = 363/605 (60%), Gaps = 20/605 (3%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEK S+AKSVA IL +R R+ RS+Y K Y+F+++ G + MTSV+
Sbjct: 1 MRVLCVAEKNSIAKSVASILGGGH-VRRRDTRSKYVKNYDFSFNFGGNVGSSDVTMTSVS 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GHL E F Y W S L+ A + V ++ + + +++EAR Q+L +W DCD
Sbjct: 60 GHLTEASFPSEYSSWSSVPQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYIWTDCD 119
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
REGE+I E+ V RA N + + RA F+ L I A + D ++ ADAVDAR E+
Sbjct: 120 REGEHIGVEISNVARASNPSIQVIRADFNNLERSHIISAAKRPRDVSKNAADAVDARIEL 179
Query: 186 DLRIGASFTRFQTMLL-KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEE 244
D R+GA FTR QT+ L K+F I +N ++SYGPCQFPTLGFVV+R+ ++ E
Sbjct: 180 DFRLGAIFTRLQTIQLQKSFDIL-----QNKIISYGPCQFPTLGFVVDRWQRVEDFVPET 234
Query: 245 FWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYP 304
+W + K + T F+W R +FD + +II E C++ TA V + Q+ K KY P P
Sbjct: 235 YWHLRFVDKRQGKTIQFNWERAKVFDRLTTMIILENCLECKTAKVVNITQKPKTKYKPLP 294
Query: 305 LSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGH 364
LST+EL K ++ R+S++ T+++AE+LY GF+SYPRTETD F S NLH I+Q+ G
Sbjct: 295 LSTVELTKLGPKHLRISAKKTLELAENLYTNGFVSYPRTETDQFDSSMNLHAIIQKLTGA 354
Query: 365 PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRH 424
+W YA+ LL AG +R P G H+D+AHPPIHP + + SQDH+K+YEL+ R
Sbjct: 355 QEWDSYAEGLL---AGDYRPPRKGKHNDRAHPPIHPVQMVHRSALPSQDHWKVYELITRR 411
Query: 425 FLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVHGQQ 483
FLAC S A GAET+V++ + E+FS G ++ KNYL+VY +E W +P Y ++
Sbjct: 412 FLACCSDNAKGAETLVQVKMEEELFSKKGLLVTEKNYLEVYPYEKWESSDQLPEYRLHEE 471
Query: 484 FIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN--- 540
F P L + T P ++E +L++ MD GIGTDATM +HI+K+ +R Y IK
Sbjct: 472 FQPHILDMMDSSTSSPSYITEPELIALMDANGIGTDATMAEHIEKVQEREYVIKRKKRGQ 531
Query: 541 --TRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 596
T F P+++G AL GYD++G E L KP LR ME +K + G ++ ++ L Q
Sbjct: 532 GVTEFVPSSLGVALAKGYDEIGLEWSLTKPFLRKEMEVQLKNIENGQLNRNVLVHMILTQ 591
Query: 597 MKACF 601
+ F
Sbjct: 592 FRDVF 596
>sp|Q9Z321|TOP3B_MOUSE DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1
Length = 862
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/642 (36%), Positives = 349/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ V N + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + H +E + W R +FD+ A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQMFLNMTKLEKEAWVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W ++LL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADSVKQLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E F+ G+ +++ + ++ ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPGFTEIMPWQSVPLEESLPTCQK 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYHQVLGHTLDIFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + V C C + V+ +TCN+C
Sbjct: 723 IGQCVECENGVLVLDPTSGPKWKVACNT---CNVVAHCFENAHRVRVSADTCNTCEAA-- 777
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEI 731
L+ F + + P PG H GCI CD ++L+E+
Sbjct: 778 -LLDVDFNKAKSPLPGNETQHTGCIF-CDPVFQELVEL 813
>sp|O95985|TOP3B_HUMAN DNA topoisomerase 3-beta-1 OS=Homo sapiens GN=TOP3B PE=1 SV=1
Length = 862
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 237/642 (36%), Positives = 348/642 (54%), Gaps = 24/642 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRG-SLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
Query: 69 MELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
M LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 62 MTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
Query: 128 GENIAFEVIEVC-----RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
GENI FEV++ +A + RARFS++ D +I A+ L +P+ A +VDAR
Sbjct: 122 GENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDAR 181
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
QE+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ +
Sbjct: 182 QELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKP 237
Query: 243 EEFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
E +W + + ++ + W R +FD A + M E A V ++EK K
Sbjct: 238 ETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQR 297
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 298 PLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQ 357
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP W +RLL A G+ N GHD HPPI P K S+ E+ D ++LYE +
Sbjct: 358 ANHPYWADTVKRLL--AEGI--NRPRKGHDAGDHPPITPMK-SATEAELGGDAWRLYEYI 412
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVH 480
RHF+A VS ++ + I E+F+ SG+ +L+ + +V ++S +PT
Sbjct: 413 TRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQR 472
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 473 GDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESG 532
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K
Sbjct: 533 RRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRK 592
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
F + E M + F + A G+ + +CG C
Sbjct: 593 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKCH 628
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + V C +C + V+ +TC+ C
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVAC---NKCNVVAHCFENAHRVRVSADTCSVCEAA-- 777
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEI 731
L+ F + + P PG H+GC+ CD ++L+E+
Sbjct: 778 -LLDVDFNKAKSPLPGDETQHMGCVF-CDPVFQELVEL 813
>sp|P13099|TOP3_YEAST DNA topoisomerase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP3 PE=1 SV=1
Length = 656
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 240/649 (36%), Positives = 344/649 (53%), Gaps = 45/649 (6%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS-----IRGQPCHMLMT 62
+ VL VAEK S+AK+V+ IL + R+ Y K Y+F +S G C + MT
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTS-RDSGYMYVKNYDFMFSGFPFARNGANCEVTMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL +DF W C +L+ AP+ + + ++K I ++ EAR +L++W
Sbjct: 60 SVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADA 178
DCDREGE I +E+ + + N L+ + RA FS L + I A +N + A
Sbjct: 120 DCDREGEYIGWEIWQEAKRGN-RLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVHA 178
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVT------------DDRNLVLSYGPCQFPT 226
V R EIDLR G +FTR T L+N + T + + V+SYG CQFPT
Sbjct: 179 VGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFPT 238
Query: 227 LGFVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQE 284
LGFVV+R+ I+ EEFW I +K GT TF W RGHLFD S + YE C++
Sbjct: 239 LGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIET 298
Query: 285 P--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342
A V ++ + KY P PL+T+EL+K +RY R++++ ++ AE LYQ GFISYPR
Sbjct: 299 AGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKGFISYPR 358
Query: 343 TETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLLD----HAAGLWRNPGSGGH 390
TETD+F +L +V++Q G W YA LL ++ P SG H
Sbjct: 359 TETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNNNKFKFPRSGSH 418
Query: 391 DDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450
DDKAHPPIHP E+ S ++YE V RHFLAC S+ A G + ++ A E FS
Sbjct: 419 DDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSMTLVLDWAVERFS 478
Query: 451 TSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
SG V+L +N+LDVY + W +P + +G T PP ++E++L+
Sbjct: 479 ASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELIL 538
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGYDDMGYE--LW 564
MD GIGTDAT+ +HI K+ R Y + T PT +G +LV G++ +G E
Sbjct: 539 LMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHGFEAIGLEDSFA 598
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
KP R ME D+K++ G+ SK DV+ + +++ + + K LL+
Sbjct: 599 KPFQRREMEQDLKKICEGHASKTDVVKDIVEKYRKYWHKTNACKNTLLQ 647
>sp|O96651|TOP3B_DROME DNA topoisomerase 3-beta OS=Drosophila melanogaster GN=Top3beta
PE=2 SV=2
Length = 875
Score = 363 bits (933), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 223/640 (34%), Positives = 344/640 (53%), Gaps = 25/640 (3%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
+VL VAEKPS+A S+AGILS N + G +E+ + R + H MTSV GH
Sbjct: 3 SVLMVAEKPSLAASLAGILS-NGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF+++Y W DP L+ K K++++K L EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAVNCHL----VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ + V ++ V RA FSA+ +++I +A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVKHVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT F D D + ++SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQT----KFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 238 SFWHLQLLAGQPE--VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G+ISYPRTET+ + + +L ++
Sbjct: 296 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVLHVLKP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ +L G + P G D HPPI P K + S + +D +++YE + R
Sbjct: 356 SADFGEEARSIL----GDIQTP-RKGKDAGDHPPITPMKLGN-RSDFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ VS+ T ++++ E FS + V++ + V + ++G P +V G
Sbjct: 410 HFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKVMTWSAFGKDEPQPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP L+E++L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 QVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNICQRNYVHIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +R+ +E + ++ G+ + DVL + ++ K F
Sbjct: 530 LMPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKF- 588
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
+ VK +++M FE +G+ +CG C+
Sbjct: 589 ---MYFVKNIDSMDALFE--VSFSPLAESGKAHSRCGKCR 623
>sp|Q9HM08|TOP1_THEAC DNA topoisomerase 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=topA
PE=3 SV=1
Length = 770
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 166/587 (28%), Positives = 282/587 (48%), Gaps = 37/587 (6%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+AEK + +A LS G +++ R++ EF Y+ G +++ ++GH++E D
Sbjct: 8 IAEKADAGRRIAYFLS---GGQVKSHRAKGTSYLEFEYN--GSKTYLI--PLSGHIVEAD 60
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIA 132
F+ Y W+ D +DL A + K++ K +TL+ + + +V+ D DREGE I
Sbjct: 61 FESGYSDWNKIDLSDLIDARIVKNI--KNKVAYQTLQAFRGKVEEIVIATDYDREGELIG 118
Query: 133 FEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGAS 192
E +++ + + RRA+FSAL EI + +NL+ N ADA DAR+ IDL G+
Sbjct: 119 VEALDIIKEGKEEI--RRAKFSALTKNEILDSFKNLIGVNYSLADAADARESIDLIWGSV 176
Query: 193 FTRFQTMLLKNFHIDSVTDDR--NLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
TRF SVT R LS G Q PTL VV+R EIQ+ E +WTI+
Sbjct: 177 LTRFF----------SVTTGRLGKSFLSAGRVQTPTLAIVVDREREIQSFRPERYWTISI 226
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIEL 310
+ ++G + ++ D +A IYE ++ V+ +E P P ST E
Sbjct: 227 TF-DKDGQFKARYPE-NIKDQDTAEKIYE-AIKGKNGRVSSYTSKEDHIRRPAPFSTTEF 283
Query: 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPY 370
+ ASR M ++ M +AE+LY G ISYPRT+ + NL +++ ++ + + Y
Sbjct: 284 LREASRIGIMPTK-AMSIAENLYMRGLISYPRTDNTVYPRSINLKSVLK-KLENTAYSKY 341
Query: 371 AQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVS 430
+ + L P G + HPPI+P S + + D+ ++Y+L++RHFL+ +
Sbjct: 342 VKEIETFDRIL---PSRGRIETTDHPPIYPV--DSPKEQLKGDYGRVYDLILRHFLSTLY 396
Query: 431 QPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLT 490
+ EI + G F +G+ + + ++Y ++ + +P G+
Sbjct: 397 RDGKKTVAEAEIYVNGYTFKAAGQHTTDRGWTEIYGYDP-KDVYLPELTEGEDLKAIDWN 455
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
+ T+PPP + LL M++ +GT +T HD I KL++R + PT +G
Sbjct: 456 IQREETKPPPRYDMSSLLKKMEELNLGTKSTRHDIIGKLIERGFI---EGNPVKPTPLGM 512
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
A + + + P + + +E DM + SK DV+ + +
Sbjct: 513 AFIDAVRSVNSHIADPEMTAKLEEDMDRIEKNEMSKNDVVEESKKML 559
>sp|O58356|TOP1_PYRHO DNA topoisomerase 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=topA PE=3
SV=1
Length = 686
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 188/698 (26%), Positives = 319/698 (45%), Gaps = 45/698 (6%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKP+VA+ +AG LS+ + ++ +S + Y Y I + +++ S GHL
Sbjct: 2 ILIIAEKPNVARKIAGALSERRPIK----KSLFGVPY---YEIFREGKKLIVASAVGHLY 54
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIK----KTLEEEARRCQWLVLWLDCD 125
L R D+ PV ++ E K+ K L A+R + ++ D D
Sbjct: 55 GLAPK---RDVFGYPIFDIEWVPV--YIAEKGKEYAREYIKALSVLAKRVREFIVACDYD 109
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQ 183
EGE I + ++ V+ V +R +FSAL R++ A +NL +P N A+A AR
Sbjct: 110 TEGEVIGYTALKYACGVDPR-VAKRMKFSALTKRDLLNAWRNL-EPTINFGMANAGIARH 167
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+D G + +R T +K + +VLS G Q PTL F+VER EIQ+
Sbjct: 168 ILDWYWGVNLSRALTHAIKK------ASGKWVVLSTGRVQGPTLKFLVEREREIQSFVPR 221
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAV-IIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W I + T ++ + +++ I+ E+ P + ++++Q++ PP
Sbjct: 222 PYWVIKLIFEKNGQKFTANYEKDKIWEEEEGKRIVLEVKKSIPRVSNVEIKRQKRT--PP 279
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
+P L++ A F S + T+ +A+ LY+ GF SYPRTE+ N I+Q
Sbjct: 280 HPFDLGTLQREAYSAFGFSPKKTLDIAQSLYEKGFSSYPRTESQKLPRNINFRMIIQNLA 339
Query: 363 GHPDWGPYAQRLLDHAAGLWR-NPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
P + PYA LL GL P G +D AHP I+PT ++D KLY+++
Sbjct: 340 KMPQYRPYAHILL----GLPELKPVEGKKEDPAHPAIYPTGEIPRPGDLTKDEEKLYDMI 395
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVH 480
VR FLA +PA+ V I F SG + K +L VY ++ + + +P +
Sbjct: 396 VRRFLAVFMEPAIRESVKVTIRAGPHKFFLSGGRTVKKGWLSVYGKYVKFEEVTLPEFFI 455
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN 540
G++ + + T+PP S A ++ M+ G+GT AT ++ L R Y +
Sbjct: 456 GERIKVIQVKREKKKTKPPARYSPAAVIKKMEDLGLGTKATRAQILETLYQRGYIEGKKS 515
Query: 541 TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
+ P +G ++ + E+ L E M+ + G +K +V+ +++
Sbjct: 516 IKVTP--LGMKVIETLEKYVPEIISVELTREFEKKMELIMEGRLTKEEVIEEAKERLTKI 573
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC 660
+ + +++++ GI + GED + VV +C C +V + G VGC
Sbjct: 574 LEEFKKRELEI----GIELAKIVVGED-EVKPLVVGKCPKCGGDLIVKYNKKTGKRFVGC 628
Query: 661 LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQ 698
+P+C + + E T TC C PV +I+
Sbjct: 629 SNWPKC-DVTYPILQRGEIIPTNKTC--CNGAPVVIIR 663
>sp|Q9UYS8|TOP1_PYRAB DNA topoisomerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=topA PE=3 SV=1
Length = 685
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 196/716 (27%), Positives = 320/716 (44%), Gaps = 60/716 (8%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKP+VA+ +AG LS+ + +R ++ + Y Y + +++ S GHL
Sbjct: 2 ILVIAEKPNVARKIAGALSERRPIR----KTIFGVPY---YEVFRDGKKLIVASAVGHLY 54
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKK----TLEEEARRCQWLVLWLDCD 125
L + + + D + PV ++ E KD K L A+R + ++ D D
Sbjct: 55 GLAPKQDFFGYPIFD---IEWVPV--YIAEKNKDYAKDYIKALSVLAKRVKEFIVACDYD 109
Query: 126 REGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP--NQWFADAVDARQ 183
EGE I + ++ V+ +R +FSAL R++ A +NL +P N A+A AR
Sbjct: 110 TEGEVIGYTALKYACGVDPSRA-KRMKFSALTKRDLLNAWRNL-EPTINFGMANAGIARH 167
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+D G + +R T +K + +VLS G Q PTL F+VER EIQ+ +
Sbjct: 168 VLDWYWGVNLSRALTHAIKR------ASGKWVVLSTGRVQGPTLKFLVEREREIQSFVPK 221
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAV-IIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W I + ++ + ++ A I+ E V++ A V+ + + + + PP
Sbjct: 222 PYWVIKLVIEKNGQKLVANYEKDKIWSEEEAKKIVTE--VKKSKARVSNIEVKRQKRNPP 279
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
P L++ A F S + T+ +A+ LY+ GF SYPRTE+ N I+Q
Sbjct: 280 VPFDLGTLQREAYSAFGFSPKKTLDIAQSLYEKGFTSYPRTESQKLPKNLNFRLIIQNIS 339
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
P + PYA LL P G +D AHP I+PT G S+D KLY+++V
Sbjct: 340 RMPQYRPYAHLLLGMPE---LKPVEGKKEDPAHPAIYPTGEIPGPGDLSKDEEKLYDMIV 396
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVY-RFESWGGLVIPTYVHG 481
R FLA +PAV V I F SG + + +L VY ++ + + +P + G
Sbjct: 397 RRFLALFMEPAVRESVKVTILAGPHKFMLSGARTVKQGWLSVYGKYIKFDEVTLPEFFIG 456
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
++ + + T+PP S A ++ M+ GIGT AT ++ L R Y +
Sbjct: 457 ERVRVLQVRREKKKTKPPARYSPAAVIKKMEDLGIGTKATRAQILETLYQRGYIEGKKSI 516
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+ P +G ++ + E+ L E M + G +K +V+
Sbjct: 517 KVTP--LGMKVIETLEKYVPEIISVELTREFERKMDLIMQGKLTKEEVIE---------- 564
Query: 602 LDARLKKVKLLE-------AMGIFFERWSGGEDQQAAGE----VVRQCGICQESNMVLKK 650
+A++K K+LE +G+ R G+ + E VV +C C +V
Sbjct: 565 -EAKVKLTKILEEFKKRELEIGLELARIVVGDVKDEIKEEKPIVVGKCPKCGGDLIVKYN 623
Query: 651 SRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEI 706
+ G VGC +P+C + + E T TC C PV +I+ K R EI
Sbjct: 624 KKTGKRFVGCSNWPKC-DVTYPILQRGEIIPTNKTC--CNGAPVVIIRDKGRDIEI 676
>sp|O28469|TOP1_ARCFU DNA topoisomerase 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=topA PE=3
SV=1
Length = 663
Score = 219 bits (559), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 191/702 (27%), Positives = 321/702 (45%), Gaps = 79/702 (11%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L + EK + A+ +A IL K+ +++GR Y Y +++ + GH++E
Sbjct: 6 LIITEKDNTARRIASILFKDVKT-LKKGRVSY-------YHSPSNDAYVV--GLKGHIVE 55
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
LDF + W L A + K V E + I L+E A++ + + D DREGE
Sbjct: 56 LDFPKELNNWTKTPLEKLLQAELVKKVKE--RTISSILKEIAKKADRVTVATDYDREGEL 113
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E +E+ ++VN + + R R+SA+ ++EI A V + A+A ARQ+IDL G
Sbjct: 114 IGVEALEIVKSVNPTVKVDRVRYSAVTEKEIRSAFSKPVKVDFNLANAALARQKIDLIWG 173
Query: 191 ASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC 250
A+ TR L + H + D LS G Q PTL +V+R EIQ + E+++ I
Sbjct: 174 ATLTR-----LISVHSGRMGKD---FLSVGRVQTPTLRLIVDRELEIQNFKPEKYYEIFA 225
Query: 251 SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ-EPTATVTKVRQQEKLKYPPYPLSTIE 309
EG ++ H Y S ++ + TA V + ++ + P P +T E
Sbjct: 226 EF---EG-----FIAKHPKRYGSKEEAEKLFAKIGETAKVEEFTRRRMEENRPTPFNTTE 277
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
+ AS++ MS M +AE LY G+ISYPRT+ + NL IV P
Sbjct: 278 FLREASKF--MSPHKAMNIAETLYMNGYISYPRTDNTVYPPTINLIEIVS---ALSSVFP 332
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS-GESRWSQDHYKLYELVVRHFLAC 428
+++ + P G + K HPPI+PT + GE S+D + +YELVVR FLA
Sbjct: 333 REAQIVLSQDKI--TPSRGRRETKDHPPIYPTGVAKRGE--LSKDEWTIYELVVRRFLAT 388
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
++ AV V ++ G F +GR ++ + D+Y + +P G
Sbjct: 389 LAPKAVWDVRRVVLDSNGVKFVANGRQLVEAGWRDIYIYSKAEETELPLLKKGDVLRILK 448
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
L+ T+PP S + L+ M+K +GT +T H+ I+KL+ R Y F P+
Sbjct: 449 KRLEEKETKPPGRYSASSLIKMMEKLNLGTKSTRHEIIQKLVSRRYI---HGNPFRPSET 505
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN----CLQQMKACFLDA 604
+++ + + P++ + +E++M ++ G K + +V+ LQ ++A +D
Sbjct: 506 AFSVINVLKETAETITLPDMTAKLENEMDLIAEGKKREPEVVDESREMLLQILRA--IDY 563
Query: 605 RLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFP 664
R L E + ++V +C C +V+++S+ G +GC +P
Sbjct: 564 RKLSKDLREGV--------------KKDKIVGKCPECG-GELVVRQSKAGKRFIGCSNYP 608
Query: 665 QCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEI 706
C + LP + G +Y+ + ++HEI
Sbjct: 609 DCTFTLPLPQN----------------GTLYITAKQCKEHEI 634
>sp|O27661|TOP1_METTH DNA topoisomerase 1 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=topA PE=3 SV=1
Length = 718
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 178/682 (26%), Positives = 297/682 (43%), Gaps = 53/682 (7%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+ EKP ++ +AG L + ++ + G+ Y + E + + + S GHL L
Sbjct: 13 ICEKPKSSEKIAGALFPD-AMKKKHGKVSYWEHVEGDKRV-------TIVSAVGHLYSL- 63
Query: 73 FDERYRKWHSCDPADLYHAPVRKHVPEDKK----DIKKTLEEEARRCQWLVLWLDCDREG 128
R R+ + DL AP+ H + KK D + + A + D D EG
Sbjct: 64 ---RPRQSNEEHFFDLEWAPI--HEIDKKKGYVKDYLNVIRKFAAGADRYIHACDYDIEG 118
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
I F ++ R +FS L EI +A +N ++ + D+ AR +D
Sbjct: 119 TLIGFNALKYGCGEEALRKTSRMKFSTLTREEIQRAYKNPIEVDYGQVDSGAARHILDFI 178
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTI 248
G + +R L+K+ +R + LS G Q PTL +VER EI+ + +W I
Sbjct: 179 FGVNISR---SLMKSV---KAATNRFIKLSAGRVQTPTLAILVEREKEIRDFKPVPYWII 232
Query: 249 NCSHKSEEGTATFSW-MRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
++E G + RG +F I E C Q A V VR ++ ++ PP P
Sbjct: 233 ----RAELGEGIIAESKRGKIFKRELVDSILEKC-QGSDAEVKDVRVRDTIRKPPVPFDL 287
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
L+ A R F S + T +A++LY G+ SYPRT + I++ +P +
Sbjct: 288 GTLQSEAYRVFGFSPKKTQTIAQNLYTEGYTSYPRTSSQKLPESIGYEKILKNLAKNPRF 347
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G + +RL P G +D AHP IHPT E S+D K+Y+L+V F++
Sbjct: 348 GVHIERLRGPL-----KPHEGKKEDDAHPAIHPTGLLPSE--LSKDEKKVYDLIVHRFIS 400
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPT 487
+ A+ VE+ I E FS S + + +++ Y + P G
Sbjct: 401 VFGEDAILQTMKVELEIGEEEFSFSRKRVSKAGWMESYPYTKMEDEEFPEISGGDSLAVR 460
Query: 488 TLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTN 547
+++ D T+PP +EA L+ +++ G+GT +T D I KL DR Y I+ R +P
Sbjct: 461 SVSADERETKPPARYNEASLIRELERRGLGTKSTRADIIAKLYDRKY-IEGKKIRVSP-- 517
Query: 548 IGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLK 607
+GE ++ ++ L E +++++ G SK V+ + ++++ D
Sbjct: 518 LGENIIDTLTRYCEKIISEELTRQFERELEDIMRGKISKDRVIDEAITEVRSILSDIE-- 575
Query: 608 KVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
+ L +G E + +D + GE C C ++ R+ + VGC ++P CR
Sbjct: 576 --ENLRDIGK--ELYRAYQDSRVVGE----CPACGGKLVIKYSPRNRSTFVGCSSYPDCR 627
Query: 668 NAVWLPGSVSEAAVTTNTCNSC 689
LP A+V + C C
Sbjct: 628 TVYSLPRG---ASVLKSLCEKC 646
>sp|Q59046|TOP1_METJA DNA topoisomerase 1 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=topA PE=3 SV=1
Length = 761
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 174/697 (24%), Positives = 306/697 (43%), Gaps = 68/697 (9%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ L + EKPSVAK +A L K + I +G Y + +++ S GH
Sbjct: 5 MTALIICEKPSVAKKIANALGKAKKKSI-DGVP--------YYELERDGKKIIVASAVGH 55
Query: 68 LMELDFDERYR---------KW--HSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQ 116
L L E KW S D Y V K++ K L++ ++
Sbjct: 56 LFTLVEKENKEFGFYPVFDIKWVPASVDKGKEY---VNKYI--------KALKKLSKDAD 104
Query: 117 WLVLWLDCDREGENIAFEVIEVCRAVNC-HLVLRRARFSALIDREIHQAVQNLVDPNQWF 175
+ D D EGE I + ++ C C +R RFS+L +EI +A +N + +
Sbjct: 105 EFYIATDWDIEGELIGYHALKYC----CGREKAKRMRFSSLTKKEIVRAFENPDEIDYGL 160
Query: 176 ADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYW 235
DA ++R +D G + +R ++ + R +S G Q P L F+ ER
Sbjct: 161 VDAGESRHILDWYFGINLSRALMNAIRAVN-------RWKTMSVGRVQGPALAFLTEREL 213
Query: 236 EIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQ- 294
EI+ + +W I K + ++ A +YE E +A V ++++
Sbjct: 214 EIKKFIPKPYWVIEALLKD---NLKAIHEKEKFWNEKEAKNVYEKIKDEKSAKVVEIKKT 270
Query: 295 QEKLK-YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+ KLK PP+ L T L++ A YF++S + T ++A+ LY+ ISYPRT +
Sbjct: 271 KRKLKPLPPFDLGT--LQREAYSYFKISPKETQEIAQKLYENALISYPRTSSQKLPKDRK 328
Query: 354 -LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQ 412
L I+ HP +G +A+R+L P G +D AHP IH E S+
Sbjct: 329 YLEDILNIIKNHPVYGKWAERILKENL----KPVEGKKEDPAHPAIHIVDIPKEEL--SE 382
Query: 413 DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG 472
++Y+L+ R LA A V+I+I GE F SG + + + ++Y F +
Sbjct: 383 KEKEIYDLIARRTLAAFWDNAEREYLNVKIDIKGEKFKLSGSRTVKEGWHEIYYFPKFDE 442
Query: 473 LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDR 532
+ +P +T+ T+PP + A ++ ++K G+GT AT + I KL+ R
Sbjct: 443 IELPPLKKNDIIKVEKITITRKETQPPKRYTVASIIKELEKRGLGTKATRAEIIDKLIKR 502
Query: 533 FYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
Y I D + + T++G +++ E+ + +E ++++ K DVL
Sbjct: 503 GYVIDDGSLKV--TDLGISVIETLKRFCPEIIDEKMTRDLEEKLEKIQFRKIKKDDVLDE 560
Query: 593 CLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSR 652
++++ + + K+ E +GI+ + +++A ++V +C C +++L + +
Sbjct: 561 AEKRLRKILEEFKKKE----EDIGIYLIKNLDATNKKA--KIVGKCPKCG-GDLILIRHK 613
Query: 653 DGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 689
G VGC +P+C LP + C++C
Sbjct: 614 KGRF-VGCSNYPECDVKYSLPDK-GRIKIPNKVCDAC 648
>sp|Q9YB01|TOP1_AERPE DNA topoisomerase 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=topA PE=3 SV=1
Length = 673
Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 137/488 (28%), Positives = 221/488 (45%), Gaps = 24/488 (4%)
Query: 123 DCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
D D EG I F++IE VN RR +FS L ++I +A + + +A AR
Sbjct: 103 DYDIEGSVIGFKIIEAFGDVNRA---RRMKFSTLAPQDIRRAYARMERLDVEMIEAGMAR 159
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
E+D G + +R R ++LS G Q PTL R+ EI H
Sbjct: 160 SEMDWLWGINVSR------ALMEAARRAAGRRVILSAGRVQSPTLVEAYRRWREINLHVP 213
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTS---AVIIYEMCVQEPTATVTKVRQQEKLK 299
+ ++ +E+G F R H + S A I + P V +VR + +
Sbjct: 214 KA--SVAVKITAEKGGGVFD-ARPHGWKPQSLETARSIKSELRKNPWLAVEEVRSERSIL 270
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
PP + +L+K A+R + T +AE+LY ISYPRT + N I+
Sbjct: 271 RPPPAFNLGDLQKEANRILGLPPLRTQSIAEELYLEALISYPRTNSQKLPPSINYRAIL- 329
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYE 419
+++ H G A+ LL G+ R P G DD AHP IHPT + R S++H +YE
Sbjct: 330 DKLAHGPLGREARELLKETGGVLR-PVQGSKDDPAHPAIHPTGEKPSQ-RLSKEHMAVYE 387
Query: 420 LVVRHFLACVSQPAVGAETIVEI-NIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
L+VR FLA S+ A+ +++ V + + G V+ G + +L Y + + G +P
Sbjct: 388 LIVRRFLAAFSREAIVSKSSVLLRDFQGRVWRAEGLRVEDLGWLKYYHYSTPGEKPMPPL 447
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD 538
G + + + ++ P L +A LL M+ IGT+ T I+ L R Y
Sbjct: 448 DRGDKARVVRVDVRVEWSQTPVRLDKASLLRWMESVNIGTEGTRARIIETLYKRGYLEGS 507
Query: 539 ANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL---ANCLQ 595
+ P +GEA+ + + EL KP+L ES ++++ G +++ +V+ +
Sbjct: 508 RKSEVTP--LGEAVAVIIQTLFPELSKPDLTRRFESMIEDIRSGRRTRQEVIDMSKKTIS 565
Query: 596 QMKACFLD 603
++ FLD
Sbjct: 566 KLLESFLD 573
>sp|P39814|TOP1_BACSU DNA topoisomerase 1 OS=Bacillus subtilis (strain 168) GN=topA PE=3
SV=1
Length = 691
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 147/600 (24%), Positives = 248/600 (41%), Gaps = 80/600 (13%)
Query: 123 DCDREGENIAFEV---IEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAV 179
D DREGE IA+ + +++ +C +V F+ + I ++ ++ N DA
Sbjct: 82 DPDREGEAIAWHLAHSLDLDLNSDCRVV-----FNEITKDAIKESFKHPRMINMDLVDAQ 136
Query: 180 DARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQA 239
AR+ +D +G + +L K LS G Q L +++R EI
Sbjct: 137 QARRILDRLVGYKIS---PILWKKVKKG---------LSAGRVQSVALRLIIDREKEIND 184
Query: 240 HESEEFWTINCSHKSEEGT--ATFSWMRGHLFDYTSAVIIYEMCVQEP--TATVTKVRQQ 295
+ EE+WTI+ + + T A+F G S + E+ Q TV KV ++
Sbjct: 185 FKPEEYWTIDGTFLKGQETFEASFFGKNGKKLPLNSEADVKEILSQLKGNQYTVEKVTKK 244
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA---------GFISYPRTETD 346
E+ + P P +T L++ A+R ++ TM +A+ LY+ G I+Y RT++
Sbjct: 245 ERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGREGTVGLITYMRTDST 304
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDK-AHPPIHPT---- 401
S+ V E D Y + L G R P + + AH I PT
Sbjct: 305 RISNTA-----VDEAAAFIDQT-YGKEFL----GGKRKPAKKNENAQDAHEAIRPTSVLR 354
Query: 402 KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNY 461
K S ++ +D +LY+L+ F+A PAV V++ G F +G + +
Sbjct: 355 KPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTNNGLTFRANGSKVKFSGF 414
Query: 462 LDVY------RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
+ VY + E + +P G + + + T+PPP +EA L+ +++ G
Sbjct: 415 MKVYVEGKDDQMEEKDRM-LPDLQEGDTVLSKDIEPEQHFTQPPPRYTEARLVKTLEERG 473
Query: 516 IGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESD 575
IG +T + + R Y D N RF PT +G+ ++ + E+ + ME D
Sbjct: 474 IGRPSTYAPTLDTIQRRGYVALD-NKRFVPTELGQIVLDLIMEFFPEIINVEFTAKMERD 532
Query: 576 MKEVSVGNKSKADVLAN-----------CLQQMKACFL-------DARLKKVKLLEAMGI 617
+ V GN ++ N +MK + D L ++ MG
Sbjct: 533 LDHVEEGNTEWVKIIDNFYTDFEKRVKKAESEMKEVEIEPEYAGEDCELCSSPMVYKMGR 592
Query: 618 F--FERWSGGEDQQAAGEVVRQCGI----CQESNMVLKKSRDGNLMVGCLAFPQCRNAVW 671
+ F S D + +V+Q G+ C E N+V +KS+ + GC +P C W
Sbjct: 593 YGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSKKKRVFYGCDRYPDCEFVSW 652
>sp|Q9KA23|TOP1_BACHD DNA topoisomerase 1 OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=topA PE=3
SV=1
Length = 690
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 144/616 (23%), Positives = 252/616 (40%), Gaps = 80/616 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEV---IEVCRAVNCHLVLRRARFSALIDREIH 162
K L+ A++ + + L D DREGE IA+ + +++ C +V F+ + + I
Sbjct: 65 KELKSAAKKVKRVYLAADPDREGEAIAWHLAHSLDIDETSECRVV-----FNEITKQAIK 119
Query: 163 QAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPC 222
A ++ N DA AR+ +D +G + + +L K LS G
Sbjct: 120 DAFKSPRPINMDLVDAQQARRVLDRLVGYNIS---PLLWKKVKKG---------LSAGRV 167
Query: 223 QFPTLGFVVERYWEIQAHESEEFWTINCSH--KSEEGTATFSWMRGHLFDYTSAVIIYEM 280
Q + +++R EIQA E EE+W+I + E A F G + S + +
Sbjct: 168 QSVAVKMIIDREKEIQAFEPEEYWSIQGTFALDGEPFEAKFYGTNGKKVELKSEDDVNNV 227
Query: 281 CVQEPTAT--VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA--- 335
+ V V+++E+ + P P +T L++ A+R ++ TM +A+ LY+
Sbjct: 228 LAKLKGDQFHVDSVQKKERKRNPVSPFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDL 287
Query: 336 ------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGG 389
G I+Y RT++ S +E I YAQ + + ++ S
Sbjct: 288 GKEGTVGLITYMRTDSTRISDTAKAE--TKEYIESKFGKEYAQ---NGTKAVKKDKKS-- 340
Query: 390 HDDKAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
AH I PT S + S+D +LY+L+ +A PA+ V+++
Sbjct: 341 --QDAHEAIRPTSVERDPKSLKEYLSRDQLRLYKLIWERLVASQMAPAIMDTMTVDLSNE 398
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
G +F +G + ++ VY + ++P GQ + T+PPP
Sbjct: 399 GVLFRATGSKVKFPGFMKVYIEGNDEGKKEEDRLLPNLQEGQTVTKEEIEPSQHFTQPPP 458
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ M++ GIG +T + + R Y D RF PT +GE ++ +
Sbjct: 459 RYTEARLVKTMEELGIGRPSTYAPTLDTIQKRGYVALDER-RFVPTELGEIVLELMTEFF 517
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ--QMKACFLDARLKKVKLLEAMGIF 618
E+ + ME D+ + G + ++ + + + + + +K+V++ +
Sbjct: 518 PEILDVEFTAKMEDDLDSIEEGKQQWIKIIDDFYKGFEERLKVAEEEMKEVEIKD----- 572
Query: 619 FERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSE 678
+ GE+ +CG MV K R G M C FP CRN + V E
Sbjct: 573 ----------EPTGEMCEKCG----HEMVYKMGRYGKFM-ACSNFPDCRNTKPI---VKE 614
Query: 679 AAVTTNTCNSCTPGPV 694
V C C G +
Sbjct: 615 IGV---KCPKCEKGEI 627
>sp|Q49X35|TOP1_STAS1 DNA topoisomerase 1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=topA
PE=3 SV=1
Length = 688
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 146/601 (24%), Positives = 249/601 (41%), Gaps = 77/601 (12%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
+ L D DREGE IA+ + + + R F+ + + + ++ D
Sbjct: 77 VFLASDPDREGEAIAWHLANILNLEDS--TENRVVFNEITKDAVKDSFKHPRGIEMELVD 134
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
A AR+ +D +G + + +L K LS G Q L V++R EI
Sbjct: 135 AQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSVALRLVIDRENEI 182
Query: 238 QAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ--EPTATVTKVR 293
+ + EE+W I +K + TA F + F T + ++ Q VTKV
Sbjct: 183 RNFKPEEYWKIEGEFRYKKTKFTAKFLHFKNKPFKLTEKADVEKITTQLDGDQFEVTKVT 242
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA---------GFISYPRTE 344
++EK +YP P +T L++ A+R + TM +A+ LY+ G I+Y RT+
Sbjct: 243 KKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKKQGTVGLITYMRTD 302
Query: 345 TDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK 402
+ S + + +QE G+ D+ + ++ G G D AH I P+
Sbjct: 303 STRISDQAQSEAKNYIQETYGN-----------DYTSNR-KSKGQGDQD--AHEAIRPSS 348
Query: 403 F----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
+ ++ ++D ++LY+L+ F+A PA+ +++ F +G+ I
Sbjct: 349 TLRTPNEMKNFLTRDQHRLYKLIWERFVASQMAPAILDTVAMDLTQNDIKFRANGQTIKF 408
Query: 459 KNYLDVY---RFESWGGL--VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK 513
K ++ +Y + +S G +P G+ T + T+PPP +EA L+ M++
Sbjct: 409 KGFMTLYVETKDDSEDGKDNKLPNIGEGEMVTATNIEPSQHFTQPPPRYTEARLVKTMEE 468
Query: 514 AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMME 573
IG +T I + R Y +K+ + RF PT +GE + D E+ + ME
Sbjct: 469 LKIGRPSTYAPTIDTIQKRNY-VKNESKRFVPTELGEIVHEQVKDYFPEIIDVDFTVNME 527
Query: 574 SDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGE 633
+ + +V+ G V+++ K A + K+ + AGE
Sbjct: 528 TLLDKVADGEIGWKKVISDFYSSFKQDVERAEEEMEKIEIK-------------DEPAGE 574
Query: 634 VVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGP 693
CG S MV+K R G M C FP CRN + ++ TC C G
Sbjct: 575 DCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKTIG------VTCPKCKEGD 623
Query: 694 V 694
V
Sbjct: 624 V 624
>sp|Q9PLZ2|TOP1_CAMJE DNA topoisomerase 1 OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=topA PE=3 SV=1
Length = 700
Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 153/633 (24%), Positives = 254/633 (40%), Gaps = 85/633 (13%)
Query: 96 HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIE-VCRAVNCHLVLRRARFS 154
+ D + K L+ +A+ + + L D DREGE IA+ + + + + N L R F
Sbjct: 56 RITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKDEN---TLPRIVFH 112
Query: 155 ALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRN 214
+ I A++N N +A R+ +D +G + ++
Sbjct: 113 EITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQR----------- 161
Query: 215 LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYT-- 272
LS G Q L +V+R EI+A E+++I+ + + + + + T
Sbjct: 162 -GLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLTIT 220
Query: 273 ---SAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVA 329
A +I E C E +++ + +E+ PP P T L++ AS + + TM +A
Sbjct: 221 NKDRAKLILEACKNE-VYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTMMIA 279
Query: 330 EDLYQA--------GFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDHAA 379
+ LY+ G I+Y RT++ + + N +Q G D+ P A
Sbjct: 280 QKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGK-DYLP-------SKA 331
Query: 380 GLWRNPGSGGHDDKAHPPIHPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVG 435
++ G + AH I PT S +D KLY L+ FLAC PA+
Sbjct: 332 NVYTTKTKGAQE--AHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAIS 389
Query: 436 AETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGV 495
V + VF SGR IL Y VY + ++P + GQ L ++S
Sbjct: 390 QTQNVFVKNDRVVFKISGRKILFDGYYKVYG-DMDKDKILPNFKIGQNLKVQNLEMNSHF 448
Query: 496 TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPT----NIGEA 551
T PP SEA L+ ++ GIG +T I L R Y D + P+ N+ E
Sbjct: 449 TEPPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKK-QLIPSDVAFNVTEV 507
Query: 552 LVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKL 611
L + D+ + NL E+ + E++ + KAD Q+ F ++K++
Sbjct: 508 LEKNFSDIVDSKFTSNL----ENTLDEIA---EDKAD-----WQETLKEFYYPFMRKIE- 554
Query: 612 LEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC----- 666
E + Q+ ++ C C + ++K R G V CL FP+C
Sbjct: 555 --------EGKTKIASQKTVTKLGESCPDCG-GELAIRKGRFGEF-VACLNFPKCKYSRN 604
Query: 667 -----RNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+N + ++A T TC SC G +
Sbjct: 605 LKSESKNESENTAAKAKANGTGITCPSCQKGEI 637
>sp|P34184|TOP1_BACPE DNA topoisomerase 1 OS=Bacillus pseudofirmus (strain OF4) GN=topA
PE=3 SV=3
Length = 707
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 166/701 (23%), Positives = 290/701 (41%), Gaps = 84/701 (11%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL- 71
+AEKPS AK+ A L+ R+GR IY S P L+ + GH++E
Sbjct: 5 LAEKPSAAKAYAQALNGK-----RQGR-----IYVAPPS-SLLPEGALICAAVGHILEFL 53
Query: 72 ---DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEA--RRCQWLVLWLDCDR 126
+ +E+Y+ + S D + + V DKK++ + +++ +R + ++L D
Sbjct: 54 EPGELNEKYKSY-SLDSLPIIIDLFQYKVVSDKKEVLQRIKDTIFDKRVKTIILATDAAA 112
Query: 127 EGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADA-------- 178
EGE I ++ + C ++R S++ I +A +Q ADA
Sbjct: 113 EGEYIGRNIL---YRLQCKKTIKRLWTSSMTATSIQKAF------SQLKADAETLPLYYQ 163
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
AR E D IG + +R +LLK I N +S G Q P L +V+R I+
Sbjct: 164 AKARAESDYMIGLTLSRAYGILLKEQGIVP----HNTTISLGRVQTPLLAEIVKRERLIE 219
Query: 239 AHESEEFWTINCSHKSEEGTATFSWM---RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQ 295
+E FWT+ + ++ W +F A + E+ V+ ++T+ +++++
Sbjct: 220 QFTAENFWTVKATFNNQGNVYEGEWFHEKENRIFKEEQAEQLCEL-VRNQSSTIMEMKEE 278
Query: 296 EKLKYPP--YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSF--SSG 351
+ PP Y LST++++ A F T+K A+ LY G++SYPRT+ + S
Sbjct: 279 MRTYQPPLLYXLSTLQMD--AGNAFGFKPAETLKYAQSLYDKGYLSYPRTQDERITESDA 336
Query: 352 TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWS 411
L +Q GH +G + L N G H + K + S
Sbjct: 337 RELENNIQFLSGHDTFGALFPL---PVSTLMNNKRYIGEVTDHHALLITDKIPKDKD-LS 392
Query: 412 QDHYKLYELVVRHFLAC-VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW 470
+D +Y LVV+ LA A+ + I+ + F + G+ +L+K + + +
Sbjct: 393 EDEKSIYHLVVKRILAAHYPDVAMSHKEIITKVMDRFTFRSKGKELLSKGWHHIIPPTNE 452
Query: 471 GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG--------------- 515
+++PT + G + + T T+PP + + L+ M A
Sbjct: 453 NDIMLPTLLKGSEGVVTDTLTTKSKTKPPNRYTSSSLIGFMKNAAQAIEDEDRKSISNLP 512
Query: 516 IGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESD 575
+GT+AT I L R Y I+ + PT +G +V G + P L + +
Sbjct: 513 LGTEATRAGLITLLESRKY-IEWKKNKVYPTLLGITVVDSI-KRGSVIKSPILTAKWDVK 570
Query: 576 MKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVV 635
+ E+ + D +A+ +L V L E + + W+ ++ E +
Sbjct: 571 LNEIGASLYNHKDFIAHS----------KKLSSV-LFEEVKTYSSTWNQNGVERIKSESI 619
Query: 636 RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSV 676
C +C SN+VL+K + G GC + LP V
Sbjct: 620 GACLLCG-SNVVLRKGKHGEFY-GCSNYKDSGCTFNLPFKV 658
>sp|Q9X3X7|TOP1_ZYMMO DNA topoisomerase 1 OS=Zymomonas mobilis subsp. mobilis (strain
ATCC 31821 / ZM4 / CP4) GN=topA PE=3 SV=3
Length = 1212
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 151/605 (24%), Positives = 250/605 (41%), Gaps = 78/605 (12%)
Query: 100 DKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLV-LRRARFSALID 158
DK K +E+ + L+L D DREGE I++ ++E+ + + R F+A+
Sbjct: 57 DKAHRLKAIEDAVKESDSLILATDPDREGEAISWHILELLKTKKLLPDDVERVTFNAITK 116
Query: 159 REIHQAVQNLVDPNQWFADAVDA---RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNL 215
+ A + P Q D ++A R+ +D +G FT +L +
Sbjct: 117 AAVTDA---MAHPRQLDNDLINAYLARRALDYLVG--FT-LSPILWRKLP---------G 161
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEE--GTATFSWMRGH------ 267
S G Q L VV+R EI+ + +E+W++ +++ T+ RG
Sbjct: 162 AKSAGRVQSVALRLVVDREQEIEGFKPQEYWSVEADMEADSIGFTSRLIQWRGQKLEKLS 221
Query: 268 LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMK 327
+ D T A + V+ TV+ V + + P P +T L++ A+R ++ HTM+
Sbjct: 222 IADKTQAEAA-QSDVESGHFTVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMR 280
Query: 328 VAEDLYQAGFISYPRTE---TDSFSSGTNLHGIVQEQIGH--PDWGPYAQRLLDHAAGLW 382
+A+ LY+ G I+Y RT+ D + I Q G PD Q +A
Sbjct: 281 LAQSLYEEGLITYMRTDGVQMDESAIAAARKTITQRYDGGYVPDKPRQYQVKAKNA---- 336
Query: 383 RNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEI 442
+AH I PT FS ++ S DH +LYEL+ + LA A T V++
Sbjct: 337 ---------QEAHEAIRPTDFSRDKA-ASGDHARLYELIWKRALASQMASAKLERTTVDL 386
Query: 443 N--IAGEVFSTSGRVILAKNYLDVY----------RFESWGGLVIPTYVHGQQFIPTTLT 490
V +G+V+L +L +Y R G +P G + +
Sbjct: 387 TDGTGQNVLRVTGQVVLFSGFLTLYEESADDNANDRDGKEGRARLPLLRAGDAPLKKEVR 446
Query: 491 LDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGE 550
D T+PPP SEA L+ M+ GIG +T I+ L DR Y + N RF P+ G
Sbjct: 447 ADQHFTQPPPRYSEASLVKKMEDLGIGRPSTYASVIQVLKDRAYVTLERN-RFIPSEAGR 505
Query: 551 ALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVK 610
L + + + +E + E+S G A+ + + A + D + K +
Sbjct: 506 LLTAFLERFFERYVSYDFTAGLEDSLDEISGGR-------ADWQKVLDAFWHDFKPKTAE 558
Query: 611 LLE--------AMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLA 662
++E + F E W + + G R+C C + LK R G + C
Sbjct: 559 VMEQQPSAITAELDKFLEPWLFPD--KGDGHDPRECPSCHTGRLALKGGRFG-AFIACSN 615
Query: 663 FPQCR 667
+P+C+
Sbjct: 616 YPECK 620
>sp|Q9CG80|TOP1_LACLA DNA topoisomerase 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=topA PE=3 SV=1
Length = 710
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 138/601 (22%), Positives = 254/601 (42%), Gaps = 79/601 (13%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLR-RARFSALIDREIHQAVQNLVDPNQWFA 176
+ L D DREGE I++ + + +N L + R F+ + + A + +P Q
Sbjct: 100 VYLASDPDREGEAISWHLAHI---LNLPLEEKNRVVFNEITKDAVKNAFK---EPRQIDV 153
Query: 177 DAVDARQE---IDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVER 233
D VDA+Q +D +G S + +K LS G Q L +V+R
Sbjct: 154 DLVDAQQARRVLDRLVGYSISPILWKKVKKG------------LSAGRVQSIALKLIVDR 201
Query: 234 YWEIQAHESEEFWTINCSHK--SEEGTATFSWMRG--HLFDYTSAVIIYEMCVQEPTATV 289
EI A EE+W+I+ K +++ A+F + G H VI + P V
Sbjct: 202 ENEINAFIPEEYWSIDGEFKKGTKKFKASFWGIDGKKHPLKTNEDVIKVMERLDGPDFNV 261
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA---------GFISY 340
KV ++E+ + P P +T +++ A+ + TM VA+ LY+ G I+Y
Sbjct: 262 DKVEKKERRRNAPLPYTTSSMQQDAANKLNFRTRKTMMVAQQLYEGLTLGSQGHQGLITY 321
Query: 341 PRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPI 398
RT++ S + + H + +Q G ++ H + + SG D AH I
Sbjct: 322 MRTDSTRISPVAQSAAHNYIADQFG--------EKYSKHGSKV--KNASGAQD--AHEAI 369
Query: 399 HPTK-FSSGES---RWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGR 454
P+ F++ ++ +D KLY L+ F+A A+ V ++ G +F +G
Sbjct: 370 RPSNVFNTPDAIAKYLDKDQLKLYTLIWNRFVASQMVAAIFDTVKVNLSQNGVIFIANGS 429
Query: 455 VILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+ YL +Y +S ++P + + + T+PP SEA L+ +++
Sbjct: 430 QVKFDGYLRIYN-DSDKSNMLPEMEENETVKKANVKPEQHFTQPPARYSEATLIKTLEEN 488
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
G+G +T ++ + R+Y ++ + RF PT +GE + + + + ME
Sbjct: 489 GVGRPSTYAPTLETIQKRYY-VRLSAKRFEPTELGEIVNKLIVEFFPNIVNTEFTAEMEK 547
Query: 575 DMKEVSVGNKSKADVLANCLQQMKACFLDAR--LKKVKLLE----------------AMG 616
D+ EV G + +V+ + +A ++K+++ + +G
Sbjct: 548 DLDEVEEGKRQWIEVVDQFYKPFAKELENAEEGMEKIQIKDEPAGFDCDVCGSPMVIKLG 607
Query: 617 IF--FERWSGGEDQQAAGEVVRQ----CGICQESNMVLKKSRDGNLMVGCLAFPQCRNAV 670
F F S D + +V++ C +C E N++ +K++ + GC +P C
Sbjct: 608 RFGKFYACSNFPDCRNTKAIVKEIGVKCPLCHEGNIIERKTKKNRIFYGCDRYPDCEFTS 667
Query: 671 W 671
W
Sbjct: 668 W 668
>sp|Q5HGI2|TOP1_STAAC DNA topoisomerase 1 OS=Staphylococcus aureus (strain COL) GN=topA
PE=3 SV=1
Length = 689
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 144/614 (23%), Positives = 248/614 (40%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S + Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKVEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE C IC S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGE---DCEICG-SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|Q2FZ32|TOP1_STAA8 DNA topoisomerase 1 OS=Staphylococcus aureus (strain NCTC 8325)
GN=topA PE=3 SV=2
Length = 689
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 144/614 (23%), Positives = 248/614 (40%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S + Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKVEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE C IC S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGE---DCEICG-SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|Q2FHI8|TOP1_STAA3 DNA topoisomerase 1 OS=Staphylococcus aureus (strain USA300)
GN=topA PE=3 SV=2
Length = 689
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 144/614 (23%), Positives = 248/614 (40%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S + Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKVEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE C IC S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGE---DCEICG-SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|Q06AK7|TOP1_STAAU DNA topoisomerase 1 OS=Staphylococcus aureus GN=topA PE=3 SV=1
Length = 689
Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 142/611 (23%), Positives = 245/611 (40%), Gaps = 72/611 (11%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITTA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDD 392
G I+Y RT++ S ++ I + Y + R D
Sbjct: 291 GTIGLITYMRTDSTRISDTAKAEA--KQYITNKYGESYTSK---------RKASGKQGDQ 339
Query: 393 KAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 340 DAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQGDIK 399
Query: 449 FSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLS 503
F +G+ I K ++ +Y +S +P G + T + T+PPP +
Sbjct: 400 FRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPPRYT 459
Query: 504 EADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYEL 563
EA L+ +++ IG +T I + R Y +K + RF PT +GE + + E+
Sbjct: 460 EARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYFPEI 518
Query: 564 WKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWS 623
ME+ + +++ G+ + V+ K A + K+
Sbjct: 519 IDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK--------- 569
Query: 624 GGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTT 683
+ AGE CG S MV+K R G M C FP CRN + S+
Sbjct: 570 ----DEPAGEDCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK---- 616
Query: 684 NTCNSCTPGPV 694
C C G V
Sbjct: 617 --CPKCNDGDV 625
>sp|Q8NWZ9|TOP1_STAAW DNA topoisomerase 1 OS=Staphylococcus aureus (strain MW2) GN=topA
PE=3 SV=2
Length = 689
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 143/614 (23%), Positives = 246/614 (40%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKAEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE CG S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGEDCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|Q6G9W3|TOP1_STAAS DNA topoisomerase 1 OS=Staphylococcus aureus (strain MSSA476)
GN=topA PE=3 SV=1
Length = 689
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 143/614 (23%), Positives = 246/614 (40%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKAEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE CG S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGEDCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|Q6GHI5|TOP1_STAAR DNA topoisomerase 1 OS=Staphylococcus aureus (strain MRSA252)
GN=topA PE=3 SV=1
Length = 689
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 143/614 (23%), Positives = 246/614 (40%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKAEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE CG S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGEDCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|Q7A5Y5|TOP1_STAAN DNA topoisomerase 1 OS=Staphylococcus aureus (strain N315) GN=topA
PE=1 SV=1
Length = 689
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 143/614 (23%), Positives = 246/614 (40%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKAEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE CG S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGEDCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|Q99UM1|TOP1_STAAM DNA topoisomerase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=topA PE=3 SV=1
Length = 689
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 143/614 (23%), Positives = 246/614 (40%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+WTI +K + A F + F + + ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDVEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKAEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDSDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE CG S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGEDCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|Q4L5V2|TOP1_STAHJ DNA topoisomerase 1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=topA PE=3 SV=1
Length = 689
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/611 (23%), Positives = 253/611 (41%), Gaps = 72/611 (11%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KDLKKYAKKAKNVFLASDPDREGEAIAWHLSKILELDDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
++ DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KHPRGIEMDLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQ 283
L V++R EI+ + EE+W+I +K + TA F + F + + ++ +
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPFKLKTKKDVEKVTAE 230
Query: 284 --EPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ------- 334
+T V ++EK + P P +T L++ A+R + TM +A+ LY+
Sbjct: 231 LDGDKFEITNVNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKRQ 290
Query: 335 --AGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDD 392
G I+Y RT++ T + +++ Y + L + G G D
Sbjct: 291 GTVGLITYMRTDS------TRISQTAKDEAKQYIEDKYGKDYLSNRTA----KGKQGDQD 340
Query: 393 KAHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
AH I PT ++ ++D ++LY+L+ F+A PA+ +++
Sbjct: 341 -AHEAIRPTSTLRTPYEMKAYLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQNNIK 399
Query: 449 FSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLS 503
F +G+ I K ++ +Y ++ +P G + T + T+PPP +
Sbjct: 400 FRANGQTIKFKGFMTLYVEAKDDKDNEKENKLPNLSKGDEVTATQIEPAQHFTQPPPRYT 459
Query: 504 EADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYEL 563
EA L+ +++ IG +T I + R Y +K + RF PT +GE + D E+
Sbjct: 460 EARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVYEQVKDYFPEI 518
Query: 564 WKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWS 623
ME+ + +++ G+ V+ N K LD + + +E + I
Sbjct: 519 IDVEFTVNMETLLDKIAEGDIGWRKVIDNFYGSFK---LDVE-RAEEEMEKVEI------ 568
Query: 624 GGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTT 683
+ AGE CG S MV+K R G M C FP CRN + ++
Sbjct: 569 ---KDEPAGEDCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKTIG------ 614
Query: 684 NTCNSCTPGPV 694
TC C G V
Sbjct: 615 VTCPKCKDGDV 625
>sp|Q2YXL8|TOP1_STAAB DNA topoisomerase 1 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=topA PE=3 SV=2
Length = 689
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 143/614 (23%), Positives = 245/614 (39%), Gaps = 78/614 (12%)
Query: 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAV 165
K L++ A++ + + L D DREGE IA+ + ++ + R F+ + + ++
Sbjct: 65 KELKKHAKKAKNVFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKESF 122
Query: 166 QNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFP 225
+N + DA AR+ +D +G + + +L K LS G Q
Sbjct: 123 KNPREIEMNLVDAQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSV 170
Query: 226 TLGFVVERYWEIQAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--C 281
L V++R EI+ + EE+W I +K + A F + F + I ++
Sbjct: 171 ALRLVIDRENEIRNFKPEEYWIIEGEFRYKKSKFNAKFLHYKNKPFKLKTKKDIEKITAA 230
Query: 282 VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA------ 335
+ +T V ++EK + P P +T L++ A+R + TM VA+ LY+
Sbjct: 231 LDGDQFEITNVTKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMVAQQLYEGIDLKKQ 290
Query: 336 ---GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW--RNPGSGGH 390
G I+Y RT++ S Q + D + + SG
Sbjct: 291 GTIGLITYMRTDSTRISDTAKAEA--------------KQYITDKYGESYTSKRKASGKQ 336
Query: 391 DDK-AHPPIHPTKF----SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
D+ AH I P+ +S ++D Y+LY+L+ F+A PA+ ++I
Sbjct: 337 GDQDAHEAIRPSSTMRTPDDMKSFLTKDQYRLYKLIWERFVASQMAPAILDTVSLDITQG 396
Query: 446 GEVFSTSGRVILAKNYLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPP 500
F +G+ I K ++ +Y +S +P G + T + T+PPP
Sbjct: 397 DIKFRANGQTIKFKGFMTLYVETKDDIDSEKENKLPKLEQGDKVTATQIEPAQHYTQPPP 456
Query: 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
+EA L+ +++ IG +T I + R Y +K + RF PT +GE + +
Sbjct: 457 RYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNY-VKLESKRFVPTELGEIVHEQVKEYF 515
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
E+ ME+ + +++ G+ + V+ K A + K+
Sbjct: 516 PEIIDVEFTVNMETLLDKIAEGDITWRKVIDGFFSSFKQDVERAEEEMEKIEIK------ 569
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAA 680
+ AGE CG S MV+K R G M C FP CRN + S+
Sbjct: 570 -------DEPAGEDCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKSIGVK- 616
Query: 681 VTTNTCNSCTPGPV 694
C C G V
Sbjct: 617 -----CPKCNDGDV 625
>sp|P96583|TOP3_BACSU DNA topoisomerase 3 OS=Bacillus subtilis (strain 168) GN=topB PE=3
SV=1
Length = 727
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 167/639 (26%), Positives = 271/639 (42%), Gaps = 110/639 (17%)
Query: 13 VAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELD 72
+AEKPSV + +A +L ++ + N + G ++T GHL+ L
Sbjct: 7 LAEKPSVGRDLARVLKCHK---------------KGNGYLEGD--QYIVTWALGHLVTLA 49
Query: 73 FDERY-RKWHSCDPADLYHAPVRKHVPEDKK--DIKKTLEE-EARRCQW-------LVLW 121
E Y +++ S DL P+ +PE K IKKT ++ A + Q +V+
Sbjct: 50 DPEGYGKEFQSWRLEDL---PI---IPEPLKLVVIKKTGKQFNAVKSQLTRKDVNQIVIA 103
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FADA 178
D REGE +A +IE N ++R S++ D+ I + Q L ++ + A
Sbjct: 104 TDAGREGELVARWIIE---KANVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYHSA 160
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQ 238
V AR E D +G + TR ++T N LS G Q PTL + +R +IQ
Sbjct: 161 V-ARAEADWIVGINATR------------ALTTKFNAQLSCGRVQTPTLAMIAKREADIQ 207
Query: 239 AHESEEFW---------TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATV 289
A ++ T+ K + T TF+ D TS ++ +Q A V
Sbjct: 208 AFTPVPYYGIRAAVDGMTLTWQDKKSKQTRTFNQ------DVTSRLL---KNLQGKQAVV 258
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSF 348
++++ K + P EL++ A + F S++ T+ V + LY Q ++YPRT++
Sbjct: 259 AELKKTAKKSFAPALYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTDSRFL 318
Query: 349 SSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSG 406
SS ++ +++++ + PYAQ + ++ +D K H I PT+
Sbjct: 319 SS--DIVPTLKDRLEGMEVKPYAQYVSQIKKRGIKSHKGYVNDAKVSDHHAIIPTEEPLV 376
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR 466
S S KLY+L+ + FLA + ET V I GE F+ G+ + ++ + VY
Sbjct: 377 LSSLSDKERKLYDLIAKRFLAVLMPAFEYEETKVIAEIGGETFTAKGKTVQSQGWKAVYD 436
Query: 467 F-------ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK------ 513
E +P G TLT SG T+PP +E LLS M+
Sbjct: 437 MAEEDDEQEDDRDQTLPALQKGDTLAVRTLTETSGQTKPPARFNEGTLLSAMENPSAFMQ 496
Query: 514 -------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
G+GT AT D I+KL + F K F + + L + +D
Sbjct: 497 GEEKGLVKTLGETGGLGTVATRADIIEKLFNSFLIEKKGQDIFITSKGKQLLQLVPED-- 554
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKA 599
L P L + E + ++ G K K+ V ++ MKA
Sbjct: 555 --LKSPALTAEWEQKLSAIAAG-KLKSAVF---IKDMKA 587
>sp|Q8CSU3|TOP1_STAES DNA topoisomerase 1 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=topA PE=3 SV=1
Length = 689
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 135/601 (22%), Positives = 248/601 (41%), Gaps = 76/601 (12%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
+ L D DREGE IA+ + ++ + R F+ + + + ++ D
Sbjct: 77 IFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKDSFKHPRGIEMDLVD 134
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
A AR+ +D +G + + +L K LS G Q L V++R EI
Sbjct: 135 AQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSVALRLVIDRENEI 182
Query: 238 QAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--CVQEPTATVTKVR 293
+ + EE+W+I +K + TA F + + + + + + +T V
Sbjct: 183 RNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPYKLNNKDDVQRITEALNGDQFEITNVN 242
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ---------AGFISYPRTE 344
++EK +YP +P +T L++ A+R + TM +A+ LY+ G I+Y RT+
Sbjct: 243 RKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKRQGTVGLITYMRTD 302
Query: 345 TDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF- 403
+ S+ +Q + +G + ++ G G D AH I PT
Sbjct: 303 STRISTSAKSEA---QQYINDKYG-------EQYVSQRKSSGKQGDQD-AHEAIRPTSTM 351
Query: 404 ---SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
++ ++D ++LY+L+ F+A PA+ +++ F +G+ I K
Sbjct: 352 RTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQNDIKFRANGQTIKFKG 411
Query: 461 YLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
++ +Y E+ +P G + T + T+PPP +EA L+ +++
Sbjct: 412 FMTLYVEAKDDKENDKENKLPQLDKGDKVTATKIEPAQHFTQPPPRYTEARLVKTLEELK 471
Query: 516 IGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESD 575
IG +T I + R Y +K + RF PT +GE + + E+ ME+
Sbjct: 472 IGRPSTYAPTIDTIQKRNY-VKLESKRFIPTELGEIVYEQVKEYFPEIIDVEFTVNMETL 530
Query: 576 MKEVSVGNKSKADVLANCLQQMKACF--LDARLKKVKLLEAMGIFFERWSGGEDQQAAGE 633
+ +++ G+ + V+ + K ++ ++K+++ + + AGE
Sbjct: 531 LDKIAEGDMNWRKVIGDFYNSFKQDVERAESEMEKIEIKD---------------EPAGE 575
Query: 634 VVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGP 693
CG S MV+K R G M C FP CRN + ++ TC C G
Sbjct: 576 DCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKTIG------VTCPKCNEGD 624
Query: 694 V 694
V
Sbjct: 625 V 625
>sp|Q5HPU2|TOP1_STAEQ DNA topoisomerase 1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=topA PE=3 SV=1
Length = 689
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 135/601 (22%), Positives = 248/601 (41%), Gaps = 76/601 (12%)
Query: 118 LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 177
+ L D DREGE IA+ + ++ + R F+ + + + ++ D
Sbjct: 77 IFLASDPDREGEAIAWHLSKILELEDSKE--NRVVFNEITKDAVKDSFKHPRGIEMDLVD 134
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
A AR+ +D +G + + +L K LS G Q L V++R EI
Sbjct: 135 AQQARRILDRLVGYNIS---PVLWKKVKKG---------LSAGRVQSVALRLVIDRENEI 182
Query: 238 QAHESEEFWTINCS--HKSEEGTATFSWMRGHLFDYTSAVIIYEM--CVQEPTATVTKVR 293
+ + EE+W+I +K + TA F + + + + + + +T V
Sbjct: 183 RNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPYKLNNKDDVQRITEALNGDQFEITNVN 242
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQ---------AGFISYPRTE 344
++EK +YP +P +T L++ A+R + TM +A+ LY+ G I+Y RT+
Sbjct: 243 RKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKRQGTVGLITYMRTD 302
Query: 345 TDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF- 403
+ S+ +Q + +G + ++ G G D AH I PT
Sbjct: 303 STRISTSAKSEA---QQYINDKYG-------EQYVSQRKSSGKQGDQD-AHEAIRPTSTM 351
Query: 404 ---SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKN 460
++ ++D ++LY+L+ F+A PA+ +++ F +G+ I K
Sbjct: 352 RTPDDMKAFLTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQNDIKFRANGQTIKFKG 411
Query: 461 YLDVY-----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAG 515
++ +Y E+ +P G + T + T+PPP +EA L+ +++
Sbjct: 412 FMTLYVEAKDDKENDKENKLPQLDKGDKVTATKIEPAQHFTQPPPRYTEARLVKTLEELK 471
Query: 516 IGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESD 575
IG +T I + R Y +K + RF PT +GE + + E+ ME+
Sbjct: 472 IGRPSTYAPTIDTIQKRNY-VKLESKRFIPTELGEIVYEQVKEYFPEIIDVEFTVNMETL 530
Query: 576 MKEVSVGNKSKADVLANCLQQMKACF--LDARLKKVKLLEAMGIFFERWSGGEDQQAAGE 633
+ +++ G+ + V+ + K ++ ++K+++ + + AGE
Sbjct: 531 LDKIAEGDMNWRKVIGDFYNSFKQDVERAESEMEKIEIKD---------------EPAGE 575
Query: 634 VVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGP 693
CG S MV+K R G M C FP CRN + ++ TC C G
Sbjct: 576 DCEVCG----SPMVIKMGRYGKFM-ACSNFPDCRNTKAIVKTIG------VTCPKCNEGD 624
Query: 694 V 694
V
Sbjct: 625 V 625
>sp|Q9PEV8|TOP1_XYLFA DNA topoisomerase 1 OS=Xylella fastidiosa (strain 9a5c) GN=topA
PE=3 SV=1
Length = 815
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 124/476 (26%), Positives = 209/476 (43%), Gaps = 57/476 (11%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVC--RAVNCHLVLRRARFSALIDREIHQAVQNLV 169
A+ + L D DREGE I++ + E+ R + ++R F+ + R I +A+Q
Sbjct: 71 AKTADSIYLATDPDREGEAISWHISEILKERGLLKDKPMQRIVFTEITPRAIKEAIQK-- 128
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT-DDRNLVLSYGPCQFPTLG 228
P +D VDA+Q R L F++ V LS G Q P L
Sbjct: 129 -PRMIASDLVDAQQ----------ARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALR 177
Query: 229 FVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMRGHLF--------DYTSAVIIY 278
+VER EI+A + E+W+I+ C+H ++ +A + G F D +A
Sbjct: 178 MIVEREEEIEAFITREYWSIHAECAHPAQHFSAKLIKLDGQKFEQFTITDSDTAAAAQRR 237
Query: 279 EMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA--- 335
V + +T V +E+ + P P T L++ ASR ++ TM++A+ LY+
Sbjct: 238 IQQVAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGIAL 297
Query: 336 ------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGG 389
G I+Y RT DS + + +++ I D+G A L ++
Sbjct: 298 GEEGSVGLITYMRT--DSVNLSLDALSEIRDIIAR-DYGTNA---LPDKPNVYTTKSKNA 351
Query: 390 HDDKAHPPIHPTKFSSGESR----WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
+ AH + PT ++ S + ++LYELV + +A PA+ T V++
Sbjct: 352 QE--AHEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRAVASQMIPAILNTTSVDLAAG 409
Query: 446 GE-VFSTSGRVILAKNYLDVYRF--------ESWGGLVIPTYVHGQQFIPTTLTLDSGVT 496
E VF +G ++ + +L VY + G +P G+ + + T
Sbjct: 410 NEHVFRATGTTVVVQGFLAVYEEGKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQHFT 469
Query: 497 RPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
+PPP +EA L+ +++ GIG +T I+ LL R Y + + F PT+IG A+
Sbjct: 470 QPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRS-FRPTDIGRAV 524
>sp|Q81IH1|TOP3_BACCR DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=topB PE=3 SV=1
Length = 729
Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 163/627 (25%), Positives = 272/627 (43%), Gaps = 107/627 (17%)
Query: 13 VAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
+AEKPSVA+ +A +L +G EG S+Y ++T GHL+ L
Sbjct: 7 IAEKPSVARDIARVLKCDKKGNGYLEG-SKY-----------------IVTWALGHLVTL 48
Query: 72 ----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEE-EARRCQWL-------V 119
+D +Y+KW+ DL P R + IK+T ++ A + Q L +
Sbjct: 49 ADPESYDVKYKKWNL---EDLPMLPERLKLTV----IKQTGKQFNAVKSQLLRKDVNEII 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FA 176
+ D REGE +A +I+ V + ++R S++ D+ I NL + +A
Sbjct: 102 VATDAGREGELVARWIID---KVKLNKPIKRLWISSVTDKAIKDGFANLKPGKAYDNLYA 158
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
AV AR E D IG + TR ++T N L+ G Q PT+ + R E
Sbjct: 159 SAV-ARSEADWYIGLNATR------------ALTTRFNAQLNCGRVQTPTVAMIASREDE 205
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVI--IYEMCVQEPTATVTKVRQ 294
I+ +++ ++ I + E+ T+ G+ + I I + + + ATV ++ +
Sbjct: 206 IKNFKAQTYYGIE-AQTMEKLKLTWQDANGNSRSFNKEKIDGIVKR-LDKQNATVVEIDK 263
Query: 295 QEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTN 353
++K + P EL++ A++ F S++ T+ + + LY Q ++YPRT++ SS +
Sbjct: 264 KQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTDSRYISS--D 321
Query: 354 LHGIVQEQI---GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA---HPPIHPTKFSSGE 407
+ G + E++ G ++ P+A ++L P DD H I PT+
Sbjct: 322 IVGTLPERLKACGVGEYRPFAHKVLQKPI----KPNKSFVDDSKVSDHHAIIPTEGYVNF 377
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAVGAETI-VEINIAGEVFSTSGRVILAKNYLDVY- 465
S ++ K+Y+LVV+ FLA + PA E + + + E F G+ IL + +VY
Sbjct: 378 SAFTDKERKIYDLVVKRFLAVLF-PAFEYEQLTLRTKVGNETFIARGKTILHAGWKEVYE 436
Query: 466 -RFE------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK----- 513
RFE ++P G + SG T+ P +EA LLS M+
Sbjct: 437 NRFEDDDVTDDVKEQLLPHIEKGDTLAVKLIMQTSGQTKAPARFNEATLLSAMENPTKYM 496
Query: 514 --------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDM 559
G+GT AT D I KL + F I+ T+ G L+ D +
Sbjct: 497 DTQNKQLADTLKSTGGLGTVATRADIIDKLFNSFL-IEKRGKDIHITSKGRQLL---DLV 552
Query: 560 GYELWKPNLRSMMESDMKEVSVGNKSK 586
EL P L E ++ ++ G K
Sbjct: 553 PEELKSPTLTGEWEQKLEAIAKGKLKK 579
>sp|Q87AQ6|TOP1_XYLFT DNA topoisomerase 1 OS=Xylella fastidiosa (strain Temecula1 / ATCC
700964) GN=topA PE=3 SV=1
Length = 815
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 124/476 (26%), Positives = 208/476 (43%), Gaps = 57/476 (11%)
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVC--RAVNCHLVLRRARFSALIDREIHQAVQNLV 169
A+ + L D DREGE I++ + E+ R + ++R F+ + R I +A+Q
Sbjct: 71 AKTADSIYLATDPDREGEAISWHISEILKERGLLKDKPMQRIVFTEITPRAIKEAIQK-- 128
Query: 170 DPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT-DDRNLVLSYGPCQFPTLG 228
P +D VDA+Q R L F++ V LS G Q P L
Sbjct: 129 -PRMIASDLVDAQQ----------ARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALR 177
Query: 229 FVVERYWEIQAHESEEFWTIN--CSHKSEEGTATFSWMRGHLF------DYTSAVIIYEM 280
+VER EI+A + E+W+I+ C+H ++ +A + G F D +A
Sbjct: 178 MIVEREEEIEAFITREYWSIHAECTHPAQHFSAKLIKLDGKKFEQFTITDSDTAAAAQRR 237
Query: 281 CVQEPTAT--VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA--- 335
Q +T V +E+ + P P T L++ ASR ++ TM++A+ LY+
Sbjct: 238 IQQAAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGIAL 297
Query: 336 ------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGG 389
G I+Y RT DS + + +++ I D+G A L ++
Sbjct: 298 GEEGSVGLITYMRT--DSVNLSLDALSEIRDIIAR-DYGTNA---LPDKPNVYTTKSKNA 351
Query: 390 HDDKAHPPIHPTKFSSGESR----WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA 445
+ AH + PT ++ S + ++LYELV + +A PA+ T V++
Sbjct: 352 QE--AHEAVRPTSALRTPTQVAPYLSNEEHRLYELVWKRTVASQMIPAILNTTSVDLAAG 409
Query: 446 GE-VFSTSGRVILAKNYLDVYRF--------ESWGGLVIPTYVHGQQFIPTTLTLDSGVT 496
E VF +G ++ + +L VY + G +P G+ + + T
Sbjct: 410 NEHVFRATGTTVVVQGFLAVYEEGKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQHFT 469
Query: 497 RPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
+PPP +EA L+ +++ GIG +T I+ LL R Y + + F PT+IG A+
Sbjct: 470 QPPPRYTEAALVKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRS-FRPTDIGRAV 524
>sp|Q9ZDK2|TOP1_RICPR DNA topoisomerase 1 OS=Rickettsia prowazekii (strain Madrid E)
GN=topA PE=3 SV=1
Length = 776
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 133/594 (22%), Positives = 251/594 (42%), Gaps = 70/594 (11%)
Query: 110 EEARRCQWLVLWLDCDREGENIAFEVIEVCR---AVNCHLVLRRARFSALIDREIHQAVQ 166
+EAR+ + + L D DREGE+I++ V EV + V +R F+ + + I AV
Sbjct: 67 KEARKAEVVYLATDPDREGESISWHVAEVIKEKNKVESDDFFKRVAFNEITKKAIMNAVA 126
Query: 167 NLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPT 226
N + +A AR+ +D +G + + L S G Q
Sbjct: 127 NPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCK------------SAGRVQSVA 174
Query: 227 LGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFD--YTSAVIIYEMCVQE 284
L + +R EI+ +SEE+W I+ ++ F+ H+ D II E ++
Sbjct: 175 LRLICDREDEIERFKSEEYWDISLKMQNS-NNDLFTAKLTHVNDQKLKKFSIINEKEAKD 233
Query: 285 PTAT-------VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA-- 335
T V K+ ++++ + P P T L++ A+R S++ TM++A+ LY+
Sbjct: 234 LTQKLKLQKFYVEKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVD 293
Query: 336 ------GFISYPRTETDSFSSG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGS 387
G I+Y RT+ + S+ ++ ++ + G+ + P R+
Sbjct: 294 IGKETIGLITYMRTDGVTLSNDAIADIRKLIDKNYGN-QYLPIKPRIYQSKV-------- 344
Query: 388 GGHDDKAHPPIHPTKFS----SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEIN 443
+ +AH I PT + S + + +D+YKLYEL+ +AC + + +V N
Sbjct: 345 -KNAQEAHEAIRPTNITYTPDSLKQKLEKDYYKLYELIWHRTIACQMENVIM--DLVIAN 401
Query: 444 IAGE----VFSTSGRVILAKNYLDVYRFESW------GGLVIPTYVHGQQFIPTTLTLDS 493
+A E + +G +I + VYR ES ++P + + +
Sbjct: 402 LASENKEYLAKANGSIIAFDGFYKVYR-ESLDDEDEEDNKMLPPLKEQEHIKTKEVIPNK 460
Query: 494 GVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALV 553
T PPP SEA L+ +++ GIG +T + L DR Y + RF P +G +
Sbjct: 461 HFTEPPPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVALE-KKRFIPEELGRLVT 519
Query: 554 MGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV-KLL 612
+ + + + + +E+++ E++ G L N + +K+ +++
Sbjct: 520 VFLVGFFKKYVEYDFTAGLENELDEIAAGKLEWKTALNNFWRGFNHNIESVNEQKITEII 579
Query: 613 EAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
+ + GED+++ + C C+ + LK + G + C +P+C
Sbjct: 580 NYLQKALDYHLFGEDKES-----KVCPSCKTGQLSLKLGKFGAFL-ACSNYPEC 627
>sp|Q63GK5|TOP3_BACCZ DNA topoisomerase 3 OS=Bacillus cereus (strain ZK / E33L) GN=topB
PE=3 SV=1
Length = 729
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 162/625 (25%), Positives = 270/625 (43%), Gaps = 103/625 (16%)
Query: 13 VAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
+AEKPSVA+ +A +L +G EG S+Y ++T GHL+ L
Sbjct: 7 IAEKPSVARDIARVLKCDKKGNGYLEG-SKY-----------------IVTWALGHLVTL 48
Query: 72 ----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEE-EARRCQWL-------V 119
+D +Y+KW+ DL P R + IK+T ++ A + Q L +
Sbjct: 49 ADPESYDVKYKKWNL---EDLPMLPERLKLTV----IKQTGKQFNAVKSQLLRKDVNEII 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FA 176
+ D REGE +A +I+ R + ++R S++ D+ I NL + +A
Sbjct: 102 VATDAGREGELVARWIIDKVR---INKPIKRLWISSVTDKAIKDGFANLKPGKAYDNLYA 158
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
AV AR E D IG + TR ++T N L+ G Q PT+ + R E
Sbjct: 159 SAV-ARSEADWYIGLNATR------------ALTTRFNAQLNCGRVQTPTVAMIANREDE 205
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII-YEMCVQEPTATVTKVRQQ 295
I+ +++ ++ I + + + T+ G+ + I + + ATV ++ ++
Sbjct: 206 IKNFKAQTYYGIE-AQTTNQLKLTWQDANGNSRSFNKEKIDGIVKGLDKHNATVLEIDKK 264
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNL 354
+K + P EL++ A++ F S++ T+ + + LY Q ++YPRT++ SS ++
Sbjct: 265 QKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTDSRYISS--DI 322
Query: 355 HGIVQEQI---GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESR 409
G + E++ G ++ P A ++L + S D K H I PT+ S
Sbjct: 323 VGTLPERLKACGVGEYRPLAHKVLQKPI---KANKSFVDDSKVSDHHAIIPTEGYVNFSA 379
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETI-VEINIAGEVFSTSGRVILAKNYLDVY--R 466
++ K+Y+LVV+ FLA + PA E + + I E F G+ IL + +VY R
Sbjct: 380 FTDKERKIYDLVVKRFLAVLF-PAFEYEQLTLRTKIGNETFIARGKTILHAGWKEVYENR 438
Query: 467 FES------WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK------- 513
FE ++P G + SG T+ P +EA LLS M+
Sbjct: 439 FEDDDVTDEVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAMENPTKYMDT 498
Query: 514 ------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
G+GT AT D I KL + F I+ T+ G L+ D +
Sbjct: 499 QNKQLADTLKSTGGLGTVATRADIIDKLFNSFL-IEKRGKDIHITSKGRQLL---DLVPE 554
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSK 586
EL P L E ++ ++ G K
Sbjct: 555 ELKSPTLTGEWEQKLEAIAKGKLKK 579
>sp|P46799|TOP1_THEMA DNA topoisomerase 1 OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=topA PE=1 SV=1
Length = 633
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 139/525 (26%), Positives = 221/525 (42%), Gaps = 60/525 (11%)
Query: 97 VPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSAL 156
V + K+ + + L++ A++ + L+ D DREGE IA+ + R N R FS +
Sbjct: 59 VIKGKEKVVEKLKDLAKKGELLIAS-DMDREGEAIAWHI---ARVTNTLGRKNRIVFSEI 114
Query: 157 IDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLV 216
R I +AV+N + + A AR+ +D +G S + +L +NF +
Sbjct: 115 TPRVIREAVKNPREIDMKKVRAQLARRILDRIVGYSLS---PVLWRNFKSN--------- 162
Query: 217 LSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVI 276
LS G Q TL V +R EI +++ I + TA FD +
Sbjct: 163 LSAGRVQSATLKLVCDREREILRFVPKKYHRITVNFDG--LTAEIDVKEKKFFDAETLKE 220
Query: 277 IY---EMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
I E+ V+E +V K PP P T L++ A S TM +A+ LY
Sbjct: 221 IQSIDELVVEEKKVSVKKF-------APPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLY 273
Query: 334 QA--------GFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWR 383
+ FI+Y RT++ S + ++ E G G +R R
Sbjct: 274 EGVETKDGHIAFITYMRTDSTRVSDYAKEEARNLITEVFGEEYVGSKRER---------R 324
Query: 384 NPGSGGHDDKAHPPIHPTK-FSSGESR---WSQDHYKLYELVVRHFLACVSQPAVGAETI 439
+ D AH I PT F + E + D KLYEL+ + FLA +P+ ET
Sbjct: 325 KSNAKIQD--AHEAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYEETR 382
Query: 440 VEINIAGEVFSTSGRVI--LAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTR 497
+ + G V+ + Y V++ E G + G+ P + ++ T+
Sbjct: 383 FVLRTKDGKYRFKGTVLKKIFDGYEKVWKTERNTGEF--PFEEGESVKPVVVKIEEQETK 440
Query: 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557
P P +E L+ M++ GIG +T IK LL+R Y IK PT +G ++VM Y
Sbjct: 441 PKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGY-IKKIRGYLYPTIVG-SVVMDYL 498
Query: 558 DMGY-ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
+ Y ++ + + ME D+ EV G K+ VL + + F
Sbjct: 499 EKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVF 543
>sp|Q9KRB2|TOP1_VIBCH DNA topoisomerase 1 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=topA PE=3 SV=1
Length = 876
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 128/511 (25%), Positives = 210/511 (41%), Gaps = 73/511 (14%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
K+ + L++ A+ + L D DREGE IA+ + E+ +R F+ +
Sbjct: 97 KEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKRY--KRVVFNEITKNA 154
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
I QA + + N +A AR+ +D +G + +L K LS G
Sbjct: 155 IQQAFKQPGELNMDGVNAQQARRFMDRVVGFMVS---PLLWKKVARG---------LSAG 202
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFSWMRGHLF---DYTSA 274
Q + +VER EI+A EEFW IN + ++ + G F + T A
Sbjct: 203 RVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEA 262
Query: 275 VII--------YEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTM 326
+ YE+C +E T +K P P T L++ AS + TM
Sbjct: 263 LAAVAALNKAQYEVCKREDKPTTSK---------PSAPFITSTLQQAASTRLGYGVKKTM 313
Query: 327 KVAEDLYQAGFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRN 384
+A+ LY+AG+I+Y RT++ + S+ NL G + + Y + L ++
Sbjct: 314 MLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKH--------YGEAYLPSQPNVY-- 363
Query: 385 PGSGGHDDKAHPPIHPTKFSSGESR---WSQDHYKLYELVVRHFLACVSQPAVGAETIVE 441
GS + +AH I P+ + D +KLY L+ F+AC PA T V
Sbjct: 364 -GSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVS 422
Query: 442 INIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDS-------- 493
+ A GR++ +F+ W + P + Q +P DS
Sbjct: 423 VKAAEYTLKAKGRIL---------KFDGWTRVQRPLGKNEDQILPPVKVGDSLKLVSLDP 473
Query: 494 --GVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEA 551
T+PP +EA L+ ++K GIG +T I + DR Y +K RF +GE
Sbjct: 474 KQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGY-VKVDQRRFFAEKMGEI 532
Query: 552 LVMGYDDMGYELWKPNLRSMMESDMKEVSVG 582
+ D+ +L + + ME + +++ G
Sbjct: 533 VTDRLDENFDDLMNYDFTARMEEKLDQIAEG 563
>sp|Q73E74|TOP3_BACC1 DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 10987) GN=topB
PE=3 SV=1
Length = 729
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 161/625 (25%), Positives = 270/625 (43%), Gaps = 103/625 (16%)
Query: 13 VAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
+AEKPSVA+ +A +L +G EG S+Y ++T GHL+ L
Sbjct: 7 IAEKPSVARDIARVLKCDKKGNGYLEG-SKY-----------------IVTWALGHLVTL 48
Query: 72 ----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEE-EARRCQWL-------V 119
+D +Y+KW+ DL P R + IK+T ++ A + Q L +
Sbjct: 49 ADPESYDVKYKKWNL---EDLPMLPERLKLTV----IKQTGKQFNAVKSQLLRKDVNEII 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FA 176
+ D REGE +A +I+ R + ++R S++ D+ I NL + +A
Sbjct: 102 VATDAGREGELVARWIIDKVR---INKPIKRLWISSVTDKAIKDGFANLKPGRAYDNLYA 158
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
AV AR E D IG + TR ++T N L+ G Q PT+ + R E
Sbjct: 159 SAV-ARSEADWYIGLNATR------------ALTTRFNAQLNCGRVQTPTVAMIANREDE 205
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII-YEMCVQEPTATVTKVRQQ 295
I+ +++ ++ I + + + T+ G+ + I + + ATV ++ ++
Sbjct: 206 IKNFKAQTYYGIE-AQTTNQLKLTWQDANGNSRSFNKEKIDGIVKGLDKHNATVMEIDKK 264
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNL 354
+K + P EL++ A++ F S++ T+ + + LY Q ++YPRT++ SS ++
Sbjct: 265 QKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTDSRYISS--DI 322
Query: 355 HGIVQEQI---GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESR 409
G + E++ G ++ P A ++L + S D K H I PT+ S
Sbjct: 323 VGTLPERLKACGVGEYRPLAHKVLQKPI---KANKSFVDDSKVSDHHAIIPTEGYVNFSA 379
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETI-VEINIAGEVFSTSGRVILAKNYLDVY--R 466
++ K+Y+LVV+ FLA + PA E + + + E F G+ IL + +VY R
Sbjct: 380 FTDKERKIYDLVVKRFLAVLF-PAFEYEQLTLRTKVGNETFIARGKTILHAGWKEVYENR 438
Query: 467 FE------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK------- 513
FE ++P G + SG T+ P +EA LLS M+
Sbjct: 439 FEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAMENPTKYMDT 498
Query: 514 ------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
G+GT AT D I KL + F I+ T+ G L+ D +
Sbjct: 499 QNKQLADTLKSTGGLGTVATRADIIDKLFNSFL-IEKRGKDIHITSKGRQLL---DLVPE 554
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSK 586
EL P L E ++ ++ G K
Sbjct: 555 ELKSPTLTGEWEQKLEAIAKGKLKK 579
>sp|Q6HP19|TOP3_BACHK DNA topoisomerase 3 OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=topB PE=3 SV=1
Length = 729
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 161/625 (25%), Positives = 270/625 (43%), Gaps = 103/625 (16%)
Query: 13 VAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
+AEKPSVA+ +A +L +G EG S+Y ++T GHL+ L
Sbjct: 7 IAEKPSVARDIARVLKCDKKGNGYLEG-SKY-----------------IVTWALGHLVTL 48
Query: 72 ----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEE-EARRCQWL-------V 119
+D +Y+KW+ DL P R + IK+T ++ A + Q L +
Sbjct: 49 ADPESYDVKYKKWNL---EDLPMLPERLKLTV----IKQTGKQFNAVKSQLLRKDVNEII 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FA 176
+ D REGE +A +I+ R + ++R S++ D+ I NL + +A
Sbjct: 102 VATDAGREGELVARWIIDKVR---INKPIKRLWISSVTDKAIKDGFANLKPGKAYDNLYA 158
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
AV AR E D IG + TR ++T N L+ G Q PT+ + R E
Sbjct: 159 SAV-ARSEADWYIGLNATR------------ALTTRFNAQLNCGRVQTPTVAMIANREDE 205
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII-YEMCVQEPTATVTKVRQQ 295
I+ +++ ++ I + + + T+ G+ + I + + ATV ++ ++
Sbjct: 206 IKNFKAQTYYGIE-AQTTNQLKLTWQDANGNSRSFNKEKIDGIVKGLDKHNATVLEIDKK 264
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNL 354
+K + P EL++ A++ F S++ T+ + + LY Q ++YPRT++ SS ++
Sbjct: 265 QKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTDSRYISS--DI 322
Query: 355 HGIVQEQI---GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESR 409
G + E++ G ++ P A ++L + S D K H I PT+ S
Sbjct: 323 VGTLPERLKACGVGEYRPLAHKVLQKPI---KANKSFVDDSKVSDHHAIIPTEGYVNFSA 379
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETI-VEINIAGEVFSTSGRVILAKNYLDVY--R 466
++ K+Y+LVV+ FLA + PA E + + + E F G+ IL + +VY R
Sbjct: 380 FTDKERKIYDLVVKRFLAVLF-PAFEYEQLTLRTKVGNETFIARGKTILHAGWKEVYENR 438
Query: 467 FE------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK------- 513
FE ++P G + SG T+ P +EA LLS M+
Sbjct: 439 FEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAMENPTKYMDT 498
Query: 514 ------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
G+GT AT D I KL + F I+ T+ G L+ D +
Sbjct: 499 QNKQLADTLKSTGGLGTVATRADIIDKLFNSFL-IEKRGKDIHITSKGRQLL---DLVPE 554
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSK 586
EL P L E ++ ++ G K
Sbjct: 555 ELKSPTLTGEWEQKLEAIAKGKLKK 579
>sp|Q81Z97|TOP3_BACAN DNA topoisomerase 3 OS=Bacillus anthracis GN=topB PE=3 SV=1
Length = 729
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 161/625 (25%), Positives = 270/625 (43%), Gaps = 103/625 (16%)
Query: 13 VAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
+AEKPSVA+ +A +L +G EG S+Y ++T GHL+ L
Sbjct: 7 IAEKPSVARDIARVLKCDKKGNGYLEG-SKY-----------------IVTWALGHLVTL 48
Query: 72 ----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEE-EARRCQWL-------V 119
+D +Y+KW+ DL P R + IK+T ++ A + Q L +
Sbjct: 49 ADPESYDVKYKKWNL---EDLPMLPERLKLTV----IKQTGKQFNAVKSQLLRKDVNEII 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FA 176
+ D REGE +A +I+ R + ++R S++ D+ I NL + +A
Sbjct: 102 VATDAGREGELVARWIIDKVR---INKPIKRLWISSVTDKAIKDGFANLKPGKAYDNLYA 158
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
AV AR E D IG + TR ++T N L+ G Q PT+ + R E
Sbjct: 159 SAV-ARSEADWYIGLNATR------------ALTTRFNAQLNCGRVQTPTVAMIANREDE 205
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII-YEMCVQEPTATVTKVRQQ 295
I+ +++ ++ I + + + T+ G+ + I + + ATV ++ ++
Sbjct: 206 IKNFKAQTYYGIE-AQTTNQLKLTWQDANGNSRSFNKEKIDGIVKGLDKHNATVLEIDKK 264
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNL 354
+K + P EL++ A++ F S++ T+ + + LY Q ++YPRT++ SS ++
Sbjct: 265 QKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTDSRYISS--DI 322
Query: 355 HGIVQEQI---GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESR 409
G + E++ G ++ P A ++L + S D K H I PT+ S
Sbjct: 323 VGTLPERLKACGVGEYRPLAHKVLQKPI---KANKSFVDDSKVSDHHAIIPTEGYVNFSA 379
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETI-VEINIAGEVFSTSGRVILAKNYLDVY--R 466
++ K+Y+LVV+ FLA + PA E + + + E F G+ IL + +VY R
Sbjct: 380 FTDKERKIYDLVVKRFLAVLF-PAFEYEQLTLRTKVGNETFIARGKTILHAGWKEVYENR 438
Query: 467 FE------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK------- 513
FE ++P G + SG T+ P +EA LLS M+
Sbjct: 439 FEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAMENPTKYMDT 498
Query: 514 ------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
G+GT AT D I KL + F I+ T+ G L+ D +
Sbjct: 499 QNKQLADTLKSTGGLGTVATRADIIDKLFNSFL-IEKRGKDIHITSKGRQLL---DLVPE 554
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSK 586
EL P L E ++ ++ G K
Sbjct: 555 ELKSPTLTGEWEQKLEAIAKGKLKK 579
>sp|A0R979|TOP3_BACAH DNA topoisomerase 3 OS=Bacillus thuringiensis (strain Al Hakam)
GN=topB PE=3 SV=1
Length = 729
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 161/625 (25%), Positives = 270/625 (43%), Gaps = 103/625 (16%)
Query: 13 VAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
+AEKPSVA+ +A +L +G EG S+Y ++T GHL+ L
Sbjct: 7 IAEKPSVARDIARVLKCDKKGNGYLEG-SKY-----------------IVTWALGHLVTL 48
Query: 72 ----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEE-EARRCQWL-------V 119
+D +Y+KW+ DL P R + IK+T ++ A + Q L +
Sbjct: 49 ADPESYDVKYKKWNL---EDLPMLPERLKLTV----IKQTGKQFNAVKSQLLRKDVNEII 101
Query: 120 LWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW---FA 176
+ D REGE +A +I+ R + ++R S++ D+ I NL + +A
Sbjct: 102 VATDAGREGELVARWIIDKVR---INKPIKRLWISSVTDKAIKDGFANLKPGKAYDNLYA 158
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
AV AR E D IG + TR ++T N L+ G Q PT+ + R E
Sbjct: 159 SAV-ARSEADWYIGLNATR------------ALTTRFNAQLNCGRVQTPTVAMIANREDE 205
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII-YEMCVQEPTATVTKVRQQ 295
I+ +++ ++ I + + + T+ G+ + I + + ATV ++ ++
Sbjct: 206 IKNFKAQTYYGIE-AQTTNQLKLTWQDANGNSRSFNKEKIDGIVKGLDKHNATVLEIDKK 264
Query: 296 EKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFSSGTNL 354
+K + P EL++ A++ F S++ T+ + + LY Q ++YPRT++ SS ++
Sbjct: 265 QKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTDSRYISS--DI 322
Query: 355 HGIVQEQI---GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFSSGESR 409
G + E++ G ++ P A ++L + S D K H I PT+ S
Sbjct: 323 VGTLPERLKACGVGEYRPLAHKVLQKPI---KANKSFVDDSKVSDHHAIIPTEGYVNFSA 379
Query: 410 WSQDHYKLYELVVRHFLACVSQPAVGAETI-VEINIAGEVFSTSGRVILAKNYLDVY--R 466
++ K+Y+LVV+ FLA + PA E + + + E F G+ IL + +VY R
Sbjct: 380 FTDKERKIYDLVVKRFLAVLF-PAFEYEQLTLRTKVGNETFIARGKTILHAGWKEVYENR 438
Query: 467 FE------SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK------- 513
FE ++P G + SG T+ P +EA LLS M+
Sbjct: 439 FEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAMENPTKYMDT 498
Query: 514 ------------AGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
G+GT AT D I KL + F I+ T+ G L+ D +
Sbjct: 499 QNKQLADTLKSTGGLGTVATRADIIDKLFNSFL-IEKRGKDIHITSKGRQLL---DLVPE 554
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSK 586
EL P L E ++ ++ G K
Sbjct: 555 ELKSPTLTGEWEQKLEAIAKGKLKK 579
>sp|Q65N90|TOP3_BACLD DNA topoisomerase 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=topB PE=3 SV=2
Length = 727
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 153/576 (26%), Positives = 242/576 (42%), Gaps = 109/576 (18%)
Query: 13 VAEKPSVAKSVAGILS-KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMEL 71
+AEKPSV + +A +L +G EG RY ++T GHL+ L
Sbjct: 7 LAEKPSVGRDLARVLKCHKKGNGYLEG-DRY-----------------IVTWALGHLVTL 48
Query: 72 DFDERY-RKWHSCDPADLYHAPVRKHVPEDKK--DIKKTLEE-EARRCQWL-------VL 120
E Y +++ S DL P+ +PE K IKKT ++ +A + Q + V+
Sbjct: 49 ADPEGYGKEYQSWRLEDL---PI---IPEPLKLVVIKKTGKQFQAVKSQLIRKDVKDIVI 102
Query: 121 WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLV---DPNQWFAD 177
D REGE +A +IE + L+R S++ D+ I +NL D +
Sbjct: 103 ATDAGREGELVARWIIEKAKVTKP---LKRLWISSVTDKAIKDGFKNLKNGKDFENLYHS 159
Query: 178 AVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEI 237
AV AR E D +G + TR ++T N LS G Q PTL + +R +I
Sbjct: 160 AV-ARAEADWIVGINATR------------ALTTKFNAQLSCGRVQTPTLAMIAKREEDI 206
Query: 238 QAHESEEFW---------TINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTAT 288
+ + ++ T+ K T TF+ S +Q A
Sbjct: 207 KNFKPVPYFGLRAAVDGMTLTWQDKKTSQTRTFN---------ASVTSQLAGALQGKPAV 257
Query: 289 VTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDS 347
+ +++ K + P EL++ A + F S++ T+ V + LY Q ++YPRT++
Sbjct: 258 IVDLKKTAKKSFAPGLYDLTELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTDSRF 317
Query: 348 FSSGTNLHGIVQEQIGHPDWGPYAQ---RLLDHAAGLWRNPGSGGHDDKA--HPPIHPTK 402
S+ ++ +++++ PYAQ R+L G+ N S +D K H I PT+
Sbjct: 318 LSN--DIVPTLKDRLEGMQVKPYAQHVARILKR--GVKANK-SFVNDAKVSDHHAIIPTE 372
Query: 403 FSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462
S+ KLY+L+ + FLA + P ET V I GE F+ G+ + ++ +
Sbjct: 373 EPLALGALSEKERKLYDLIAKRFLAVLMPPFEYEETKVFAEIGGETFTAKGKTVQSQGWK 432
Query: 463 DVYRFESWGGL------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK--- 513
VY F +P G +LT G T+PP +E LLS M+
Sbjct: 433 AVYDFADEDDDEEEKDQTLPKLAKGDTLSVRSLTETKGETKPPARFNEGTLLSAMENPAA 492
Query: 514 ----------------AGIGTDATMHDHIKKLLDRF 533
G+GT AT D I+KL + F
Sbjct: 493 FMQGEEKNLVKTLGETGGLGTVATRADIIEKLFNTF 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 311,825,958
Number of Sequences: 539616
Number of extensions: 13348343
Number of successful extensions: 28372
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 27778
Number of HSP's gapped (non-prelim): 212
length of query: 807
length of database: 191,569,459
effective HSP length: 126
effective length of query: 681
effective length of database: 123,577,843
effective search space: 84156511083
effective search space used: 84156511083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)