Query 046997
Match_columns 807
No_of_seqs 397 out of 2171
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gai_A DNA topoisomerase I; zi 100.0 3E-140 1E-144 1233.3 50.4 603 8-697 5-625 (633)
2 1i7d_A DNA topoisomerase III; 100.0 3E-137 1E-141 1210.2 50.7 587 10-656 2-636 (659)
3 1mw9_X DNA topoisomerase I; de 100.0 1E-130 5E-135 1145.1 54.9 541 7-604 1-578 (592)
4 4ddu_A Reverse gyrase; topoiso 100.0 3E-116 9E-121 1094.5 51.3 524 6-600 539-1100(1104)
5 1gku_B Reverse gyrase, TOP-RG; 100.0 1E-113 5E-118 1069.7 46.3 512 6-598 503-1051(1054)
6 1a6b_B Momulv, zinc finger pro 95.3 0.016 5.3E-07 42.6 3.9 26 755-780 6-31 (40)
7 1u6p_A GAG polyprotein; MLV, A 94.1 0.057 1.9E-06 42.6 4.6 27 754-780 18-44 (56)
8 2fcj_A Small toprim domain pro 93.8 0.083 2.8E-06 48.3 5.8 62 105-170 41-106 (119)
9 1dsq_A Nucleic acid binding pr 93.2 0.039 1.3E-06 36.5 1.9 20 759-778 2-21 (26)
10 1vdd_A Recombination protein R 92.6 0.037 1.3E-06 55.8 1.7 56 113-170 132-195 (228)
11 3h0g_I DNA-directed RNA polyme 91.7 0.37 1.3E-05 43.7 7.1 82 635-724 4-109 (113)
12 1tbx_A ORF F-93, hypothetical 91.1 0.35 1.2E-05 42.0 6.2 55 501-556 22-80 (99)
13 2ysa_A Retinoblastoma-binding 91.0 0.089 3E-06 41.3 1.9 22 756-777 4-25 (55)
14 1nc8_A Nucleocapsid protein; H 89.8 0.13 4.5E-06 34.8 1.6 19 759-777 6-24 (29)
15 1twf_I B12.6, DNA-directed RNA 89.2 0.66 2.3E-05 42.5 6.5 82 635-724 4-109 (122)
16 1t6t_1 Putative protein; struc 88.6 0.43 1.5E-05 43.5 4.7 38 106-143 53-90 (118)
17 3qt1_I DNA-directed RNA polyme 88.5 0.18 6.1E-06 47.1 2.2 35 634-672 23-58 (133)
18 1cl4_A Protein (GAG polyprotei 88.0 0.3 1E-05 38.9 2.9 28 758-785 29-56 (60)
19 2a51_A Nucleocapsid protein; s 84.3 0.49 1.7E-05 34.2 2.1 18 760-777 22-39 (39)
20 2bl6_A Nucleocapsid protein P1 83.5 0.43 1.5E-05 34.1 1.6 18 760-777 20-37 (37)
21 3g3z_A NMB1585, transcriptiona 83.5 1.4 4.7E-05 40.6 5.5 51 502-556 46-102 (145)
22 4aik_A Transcriptional regulat 83.5 3.1 0.00011 39.0 8.1 70 502-588 47-122 (151)
23 2hr3_A Probable transcriptiona 83.5 3.2 0.00011 38.0 8.1 51 502-556 51-107 (147)
24 1r7j_A Conserved hypothetical 83.5 0.77 2.6E-05 40.1 3.5 45 511-557 27-71 (95)
25 2ec7_A GAG polyprotein (PR55GA 83.4 0.57 2E-05 35.7 2.3 18 760-777 7-24 (49)
26 2cqf_A RNA-binding protein LIN 83.3 1 3.6E-05 36.2 4.0 21 759-779 29-49 (63)
27 3kp7_A Transcriptional regulat 82.9 3.5 0.00012 38.1 8.2 70 502-588 52-129 (151)
28 3boq_A Transcriptional regulat 82.3 3.1 0.0001 38.8 7.6 50 502-555 63-118 (160)
29 1on2_A Transcriptional regulat 81.8 2.7 9.1E-05 38.7 6.8 51 502-556 23-73 (142)
30 2fiy_A Protein FDHE homolog; F 81.7 1.3 4.4E-05 47.2 5.1 46 634-691 181-230 (309)
31 2a61_A Transcriptional regulat 81.2 2 6.9E-05 39.2 5.7 51 502-556 48-104 (145)
32 3vdp_A Recombination protein R 81.1 1.9 6.5E-05 43.0 5.7 53 114-168 149-209 (212)
33 2li8_A Protein LIN-28 homolog 80.7 1.1 3.7E-05 37.4 3.2 22 756-777 21-42 (74)
34 1mw9_X DNA topoisomerase I; de 80.6 2.3 8E-05 49.4 7.2 112 226-339 390-511 (592)
35 2cqf_A RNA-binding protein LIN 80.5 0.89 3.1E-05 36.6 2.6 21 757-777 5-25 (63)
36 2qq9_A Diphtheria toxin repres 80.4 2.6 8.9E-05 42.5 6.7 64 515-590 35-98 (226)
37 2gxg_A 146AA long hypothetical 80.2 8.7 0.0003 34.9 9.8 50 502-555 51-106 (146)
38 3bpv_A Transcriptional regulat 79.7 6.1 0.00021 35.5 8.5 50 502-555 44-99 (138)
39 2ec7_A GAG polyprotein (PR55GA 79.6 0.68 2.3E-05 35.3 1.5 19 760-778 28-46 (49)
40 3f3x_A Transcriptional regulat 79.5 2.5 8.6E-05 38.7 5.8 50 503-556 52-107 (144)
41 3s2w_A Transcriptional regulat 79.4 4.8 0.00016 37.5 7.8 51 502-556 65-121 (159)
42 3deu_A Transcriptional regulat 79.3 5.7 0.0002 37.6 8.4 51 502-556 69-125 (166)
43 2pg4_A Uncharacterized protein 79.0 1.7 5.8E-05 37.3 4.1 53 501-557 30-87 (95)
44 2fbh_A Transcriptional regulat 78.6 9.9 0.00034 34.4 9.6 51 501-555 52-108 (146)
45 2gai_A DNA topoisomerase I; zi 78.6 1.4 4.6E-05 51.8 4.3 112 226-340 360-480 (633)
46 2a51_A Nucleocapsid protein; s 78.3 0.9 3.1E-05 32.8 1.7 18 761-778 2-19 (39)
47 2bl6_A Nucleocapsid protein P1 77.3 1 3.5E-05 32.0 1.8 17 761-777 2-18 (37)
48 3bj6_A Transcriptional regulat 77.1 8.9 0.00031 35.1 8.9 50 502-555 55-110 (152)
49 3nrv_A Putative transcriptiona 76.5 4.7 0.00016 37.0 6.7 52 501-556 54-111 (148)
50 3ech_A MEXR, multidrug resista 76.4 4.8 0.00017 36.7 6.7 50 502-555 52-107 (142)
51 1a1t_A Nucleocapsid protein; s 76.2 0.87 3E-05 35.4 1.3 19 759-777 12-30 (55)
52 3cdh_A Transcriptional regulat 75.7 2.8 9.5E-05 38.9 4.9 51 502-556 58-114 (155)
53 3bro_A Transcriptional regulat 75.5 8.1 0.00028 34.8 8.0 51 501-555 50-106 (141)
54 2qww_A Transcriptional regulat 75.3 2.4 8.1E-05 39.3 4.3 51 502-556 56-114 (154)
55 3nqo_A MARR-family transcripti 75.2 2.1 7.1E-05 41.7 4.0 53 500-556 56-114 (189)
56 3hrs_A Metalloregulator SCAR; 75.1 4.3 0.00015 40.6 6.4 77 501-592 20-96 (214)
57 2eth_A Transcriptional regulat 74.5 8.5 0.00029 35.6 8.0 51 502-556 59-115 (154)
58 1fx7_A Iron-dependent represso 74.3 4.6 0.00016 40.7 6.5 73 505-592 28-100 (230)
59 1i7d_A DNA topoisomerase III; 74.2 1.7 5.9E-05 51.1 3.6 115 225-340 401-543 (659)
60 2bv6_A MGRA, HTH-type transcri 73.9 8.6 0.00029 34.8 7.8 51 502-556 52-108 (142)
61 1a1t_A Nucleocapsid protein; s 73.9 1.1 3.9E-05 34.8 1.4 18 760-777 34-51 (55)
62 2esh_A Conserved hypothetical 73.9 8 0.00027 34.6 7.3 53 502-554 27-91 (118)
63 3fm5_A Transcriptional regulat 73.9 5.3 0.00018 36.8 6.3 51 502-556 55-111 (150)
64 2fbk_A Transcriptional regulat 73.8 8.4 0.00029 36.8 8.0 54 499-556 84-143 (181)
65 2ihx_A Nucleocapsid (NC) prote 73.7 1.1 3.8E-05 35.7 1.3 20 759-778 30-49 (61)
66 3bja_A Transcriptional regulat 73.2 13 0.00044 33.3 8.7 50 502-555 48-103 (139)
67 1lj9_A Transcriptional regulat 73.1 14 0.00048 33.4 9.0 51 502-556 44-100 (144)
68 2fa5_A Transcriptional regulat 73.0 8 0.00027 35.9 7.5 51 501-555 63-119 (162)
69 3nyb_B Protein AIR2; polya RNA 72.8 0.9 3.1E-05 38.7 0.6 21 758-778 4-24 (83)
70 3e6m_A MARR family transcripti 72.4 4.2 0.00014 38.1 5.3 50 503-556 69-124 (161)
71 2xvc_A ESCRT-III, SSO0910; cel 72.3 3.8 0.00013 32.1 3.9 28 312-339 29-56 (59)
72 3oop_A LIN2960 protein; protei 72.1 3.2 0.00011 37.9 4.3 51 502-556 52-108 (143)
73 2ihx_A Nucleocapsid (NC) prote 71.4 1.3 4.5E-05 35.3 1.2 21 759-779 4-24 (61)
74 3bdd_A Regulatory protein MARR 70.8 5.2 0.00018 36.1 5.4 50 502-555 46-102 (142)
75 3zy2_A Putative GDP-fucose pro 70.5 9.8 0.00033 40.9 8.0 38 100-141 263-302 (362)
76 4b8x_A SCO5413, possible MARR- 70.4 2.1 7.2E-05 39.9 2.6 51 502-556 52-108 (147)
77 1s3j_A YUSO protein; structura 70.4 11 0.00037 34.6 7.7 50 502-555 52-107 (155)
78 3nyb_B Protein AIR2; polya RNA 70.0 3 0.0001 35.5 3.2 20 758-777 45-64 (83)
79 2qvo_A Uncharacterized protein 69.9 1.9 6.5E-05 37.1 2.0 51 502-556 31-84 (95)
80 3jw4_A Transcriptional regulat 69.9 4.2 0.00014 37.4 4.6 53 500-556 56-114 (148)
81 2rdp_A Putative transcriptiona 69.8 11 0.00039 34.2 7.7 51 502-556 57-113 (150)
82 1cl4_A Protein (GAG polyprotei 69.8 0.93 3.2E-05 35.9 0.0 20 760-779 2-21 (60)
83 3ts2_A Protein LIN-28 homolog 69.6 1.9 6.4E-05 40.9 2.0 19 760-778 120-138 (148)
84 4fx0_A Probable transcriptiona 69.4 5.9 0.0002 36.9 5.5 73 500-588 51-128 (148)
85 2nyx_A Probable transcriptiona 69.3 11 0.00038 35.5 7.6 51 502-556 60-116 (168)
86 3eco_A MEPR; mutlidrug efflux 69.2 4.9 0.00017 36.3 4.9 53 500-556 46-104 (139)
87 3k0l_A Repressor protein; heli 69.1 5.4 0.00019 37.3 5.3 51 502-556 61-117 (162)
88 4hbl_A Transcriptional regulat 68.4 2.9 0.0001 38.7 3.2 51 502-556 56-112 (149)
89 3ri2_A Transcriptional regulat 66.8 9.1 0.00031 34.8 6.0 53 503-555 35-95 (123)
90 2fiy_A Protein FDHE homolog; F 66.0 3 0.0001 44.3 3.0 13 683-695 182-194 (309)
91 2li8_A Protein LIN-28 homolog 65.9 3 0.0001 34.7 2.3 19 760-778 47-65 (74)
92 2fxa_A Protease production reg 65.6 4.9 0.00017 39.8 4.3 52 502-557 63-120 (207)
93 3hsr_A HTH-type transcriptiona 64.6 2.9 0.0001 38.2 2.3 51 502-556 51-107 (140)
94 3u2r_A Regulatory protein MARR 64.6 3 0.0001 39.4 2.4 52 501-556 62-119 (168)
95 2pex_A Transcriptional regulat 64.5 3.7 0.00013 38.0 3.0 50 502-555 62-117 (153)
96 3f8b_A Transcriptional regulat 64.4 9.1 0.00031 34.3 5.5 52 503-554 27-90 (116)
97 1yyv_A Putative transcriptiona 64.3 6.2 0.00021 36.2 4.4 40 518-557 62-107 (131)
98 2frh_A SARA, staphylococcal ac 64.3 1.7 6E-05 39.4 0.7 51 502-556 54-110 (127)
99 2jrp_A Putative cytoplasmic pr 64.1 4.1 0.00014 34.4 2.8 40 636-695 3-42 (81)
100 1xma_A Predicted transcription 63.0 6.9 0.00024 36.7 4.6 52 502-554 55-119 (145)
101 2hqh_E Restin; beta/BETA struc 62.9 1.7 5.9E-05 28.3 0.2 18 761-778 5-22 (26)
102 3cjn_A Transcriptional regulat 62.5 15 0.00052 34.0 7.0 50 502-555 67-122 (162)
103 3df8_A Possible HXLR family tr 62.2 5.8 0.0002 35.2 3.7 56 499-557 40-97 (111)
104 4esf_A PADR-like transcription 61.4 14 0.00047 33.2 6.1 55 502-556 25-89 (117)
105 2vn2_A DNAD, chromosome replic 61.3 8.3 0.00028 35.2 4.7 50 312-361 55-106 (128)
106 4ddu_A Reverse gyrase; topoiso 60.8 6.9 0.00024 48.9 5.3 55 481-536 795-850 (1104)
107 1sfx_A Conserved hypothetical 60.3 7.4 0.00025 33.2 4.1 51 502-556 35-90 (109)
108 2x4h_A Hypothetical protein SS 59.0 5.2 0.00018 36.5 2.9 72 501-589 31-102 (139)
109 1jgs_A Multiple antibiotic res 58.9 4.8 0.00017 36.3 2.6 51 502-556 49-105 (138)
110 3ts2_A Protein LIN-28 homolog 58.8 4 0.00014 38.6 2.1 19 759-777 97-115 (148)
111 1z91_A Organic hydroperoxide r 57.7 14 0.00048 33.5 5.7 41 514-555 64-110 (147)
112 2lli_A Protein AIR2; RNA surve 57.5 5.5 0.00019 36.2 2.7 21 757-777 103-123 (124)
113 2hzt_A Putative HTH-type trans 57.2 3.7 0.00012 36.2 1.4 52 502-556 28-85 (107)
114 2fbi_A Probable transcriptiona 56.9 8.2 0.00028 34.8 3.9 51 502-556 51-107 (142)
115 2nnn_A Probable transcriptiona 56.5 9.7 0.00033 34.2 4.3 50 502-555 53-108 (140)
116 4esb_A Transcriptional regulat 56.1 18 0.00063 32.2 6.0 54 503-556 24-87 (115)
117 2h09_A Transcriptional regulat 55.7 6.7 0.00023 36.5 3.1 50 503-556 56-105 (155)
118 3tgn_A ADC operon repressor AD 55.6 5.1 0.00017 36.5 2.2 51 502-556 52-108 (146)
119 2wte_A CSA3; antiviral protein 55.2 6.6 0.00023 40.2 3.2 66 502-581 167-233 (244)
120 2fsw_A PG_0823 protein; alpha- 54.9 3.3 0.00011 36.4 0.8 40 518-557 52-97 (107)
121 3l7w_A Putative uncharacterize 54.5 19 0.00065 31.6 5.7 51 505-556 26-84 (108)
122 1z7u_A Hypothetical protein EF 53.5 10 0.00035 33.5 3.8 52 502-556 36-93 (112)
123 2v79_A DNA replication protein 52.9 9.6 0.00033 35.3 3.6 50 312-361 55-106 (135)
124 2oqg_A Possible transcriptiona 51.5 11 0.00038 32.9 3.7 48 502-553 35-85 (114)
125 2p8t_A Hypothetical protein PH 50.8 8 0.00027 38.4 2.8 49 504-557 33-81 (200)
126 1bja_A Transcription regulator 50.6 11 0.00036 32.9 3.2 35 521-556 47-81 (95)
127 3j20_Y 30S ribosomal protein S 49.1 11 0.00036 28.9 2.6 30 635-671 19-48 (50)
128 1qyp_A RNA polymerase II; tran 48.4 17 0.00057 28.2 3.8 39 682-724 14-52 (57)
129 1p4x_A Staphylococcal accessor 47.2 13 0.00046 38.0 4.0 51 503-557 52-108 (250)
130 1ub9_A Hypothetical protein PH 45.7 9.9 0.00034 32.1 2.3 40 514-554 40-85 (100)
131 2lli_A Protein AIR2; RNA surve 45.6 16 0.00056 33.0 3.9 18 760-777 43-60 (124)
132 2xzf_A Formamidopyrimidine-DNA 45.2 8.4 0.00029 40.1 2.1 29 682-722 241-269 (271)
133 1k82_A Formamidopyrimidine-DNA 45.1 8.4 0.00029 40.0 2.1 29 682-722 239-267 (268)
134 3ga8_A HTH-type transcriptiona 45.0 4.4 0.00015 33.8 -0.1 42 636-691 3-44 (78)
135 3u6p_A Formamidopyrimidine-DNA 44.5 8.7 0.0003 40.0 2.1 29 682-722 244-272 (273)
136 1k3x_A Endonuclease VIII; hydr 44.5 8.7 0.0003 39.7 2.1 29 682-722 233-261 (262)
137 3aaf_A Werner syndrome ATP-dep 44.5 18 0.00062 33.4 4.0 54 511-564 56-117 (134)
138 2jne_A Hypothetical protein YF 44.4 22 0.00075 30.9 4.1 42 636-697 33-74 (101)
139 1okr_A MECI, methicillin resis 44.3 7.7 0.00026 34.5 1.4 54 502-556 25-83 (123)
140 3hhh_A Transcriptional regulat 44.2 33 0.0011 30.6 5.7 53 503-555 28-90 (116)
141 1ee8_A MUTM (FPG) protein; bet 44.2 8.9 0.0003 39.8 2.1 29 682-722 234-262 (266)
142 1p4x_A Staphylococcal accessor 43.1 7.6 0.00026 39.8 1.4 52 501-556 174-231 (250)
143 3b73_A PHIH1 repressor-like pr 41.7 16 0.00054 32.7 3.0 37 518-554 42-78 (111)
144 3elk_A Putative transcriptiona 41.6 32 0.0011 30.8 5.1 52 504-556 30-92 (117)
145 2f2e_A PA1607; transcription f 41.6 8 0.00027 36.1 1.1 49 502-554 38-91 (146)
146 1ku9_A Hypothetical protein MJ 40.3 77 0.0026 28.2 7.8 48 502-553 42-93 (152)
147 2dql_A PEX protein; circadian 40.2 35 0.0012 30.3 5.2 50 504-554 38-100 (115)
148 2jrp_A Putative cytoplasmic pr 39.7 18 0.00063 30.4 2.9 24 762-785 44-67 (81)
149 3v7q_A Probable ribosomal prot 39.4 68 0.0023 27.8 6.8 76 101-187 24-99 (101)
150 2kdx_A HYPA, hydrogenase/ureas 38.1 50 0.0017 29.6 5.9 39 641-692 60-99 (119)
151 2riq_A Poly [ADP-ribose] polym 37.7 11 0.00039 35.9 1.5 33 635-673 78-114 (160)
152 2pzo_E CAP-Gly domain-containi 36.6 7.3 0.00025 28.3 -0.0 17 761-777 22-38 (42)
153 1gku_B Reverse gyrase, TOP-RG; 35.7 19 0.00065 44.7 3.5 54 483-537 755-809 (1054)
154 1vq8_Z 50S ribosomal protein L 35.6 21 0.00072 30.2 2.7 29 635-670 27-55 (83)
155 1k81_A EIF-2-beta, probable tr 35.4 26 0.0009 24.7 2.7 31 637-671 2-32 (36)
156 3cta_A Riboflavin kinase; stru 35.0 18 0.00062 36.2 2.7 43 513-556 36-81 (230)
157 4a5n_A Uncharacterized HTH-typ 34.0 11 0.00036 34.8 0.6 50 505-557 43-98 (131)
158 1weo_A Cellulose synthase, cat 33.7 9.3 0.00032 32.7 0.2 50 634-691 15-66 (93)
159 3on1_A BH2414 protein; structu 33.5 1.1E+02 0.0037 26.4 7.1 75 102-187 24-98 (101)
160 2k4x_A 30S ribosomal protein S 33.3 16 0.00055 28.4 1.5 30 682-725 17-46 (55)
161 2obp_A Putative DNA-binding pr 31.8 32 0.0011 29.9 3.3 55 498-556 33-91 (96)
162 1hsj_A Fusion protein consisti 31.6 14 0.00048 41.1 1.3 52 502-557 421-478 (487)
163 2heo_A Z-DNA binding protein 1 31.4 43 0.0015 26.6 3.8 32 312-343 29-60 (67)
164 1y0u_A Arsenical resistance op 31.3 40 0.0014 28.5 3.9 45 500-549 42-86 (96)
165 1pqv_S STP-alpha, transcriptio 30.4 70 0.0024 33.7 6.4 15 577-591 216-230 (309)
166 1nlt_A Protein YDJ1, mitochond 30.2 59 0.002 33.1 5.6 49 636-691 55-104 (248)
167 1tbx_A ORF F-93, hypothetical 29.5 63 0.0021 27.2 4.9 37 304-340 22-58 (99)
168 3euh_A Protein KICB, chromosom 29.2 2.6E+02 0.009 30.3 10.3 82 501-583 46-147 (440)
169 3cuo_A Uncharacterized HTH-typ 29.1 39 0.0013 28.3 3.4 46 502-551 39-87 (99)
170 1p6r_A Penicillinase repressor 28.8 64 0.0022 26.2 4.7 39 304-342 23-61 (82)
171 1tfi_A Transcriptional elongat 28.7 54 0.0018 24.9 3.7 38 682-723 8-45 (50)
172 2qvo_A Uncharacterized protein 28.1 55 0.0019 27.5 4.2 31 311-341 33-63 (95)
173 2kpi_A Uncharacterized protein 27.0 36 0.0012 26.5 2.5 33 634-673 9-41 (56)
174 3kfw_X Uncharacterized protein 26.2 51 0.0018 33.6 4.2 54 499-554 18-71 (247)
175 1q1h_A TFE, transcription fact 26.1 50 0.0017 28.5 3.7 29 313-341 38-66 (110)
176 3o9x_A Uncharacterized HTH-typ 25.6 15 0.0005 33.3 0.0 13 637-649 4-16 (133)
177 3e2u_E CAP-Gly domain-containi 25.3 15 0.00051 26.8 -0.0 17 761-777 22-38 (42)
178 2akl_A PHNA-like protein PA012 25.2 22 0.00076 32.5 1.1 7 685-691 29-35 (138)
179 4esj_A Type-2 restriction enzy 25.0 29 0.00098 35.1 2.0 12 684-695 35-46 (257)
180 3a43_A HYPD, hydrogenase nicke 25.0 55 0.0019 30.3 3.8 13 683-695 107-119 (139)
181 2htj_A P fimbrial regulatory p 24.9 59 0.002 26.5 3.7 30 312-341 18-47 (81)
182 2ek5_A Predicted transcription 24.8 2.9E+02 0.01 24.7 8.8 89 491-589 17-106 (129)
183 1mkm_A ICLR transcriptional re 24.7 81 0.0028 31.7 5.5 42 511-553 30-71 (249)
184 1oyi_A Double-stranded RNA-bin 24.0 62 0.0021 27.3 3.6 30 312-341 34-63 (82)
185 3r0a_A Putative transcriptiona 23.9 63 0.0021 28.8 4.0 28 313-340 47-74 (123)
186 2xrn_A HTH-type transcriptiona 23.8 42 0.0014 33.8 3.1 43 510-553 27-70 (241)
187 2e9h_A EIF-5, eukaryotic trans 23.8 99 0.0034 29.3 5.4 35 636-673 104-139 (157)
188 1dd9_A DNA primase, DNAG; topr 23.4 1.7E+02 0.0057 31.2 7.8 50 113-162 204-255 (338)
189 3by6_A Predicted transcription 23.0 1.3E+02 0.0045 26.9 6.0 88 491-590 24-112 (126)
190 2dk5_A DNA-directed RNA polyme 22.9 79 0.0027 26.9 4.2 29 311-339 39-67 (91)
191 3i4p_A Transcriptional regulat 22.7 53 0.0018 30.8 3.4 37 312-348 21-59 (162)
192 2d1h_A ST1889, 109AA long hypo 22.7 73 0.0025 26.7 4.0 32 312-343 40-71 (109)
193 3hrs_A Metalloregulator SCAR; 22.6 64 0.0022 31.8 4.1 41 311-351 23-63 (214)
194 2lcq_A Putative toxin VAPC6; P 22.6 53 0.0018 31.0 3.3 29 656-695 131-159 (165)
195 3f6o_A Probable transcriptiona 22.5 26 0.0009 31.0 1.1 40 513-553 40-82 (118)
196 4edg_A DNA primase; catalytic 22.4 1.4E+02 0.0049 31.6 7.0 48 114-163 194-242 (329)
197 3pwf_A Rubrerythrin; non heme 22.2 42 0.0015 32.2 2.6 24 657-691 138-161 (170)
198 2g9w_A Conserved hypothetical 22.1 66 0.0022 29.1 3.8 82 500-582 23-125 (138)
199 3l09_A Putative transcriptiona 21.9 52 0.0018 34.0 3.3 55 499-554 40-97 (266)
200 2fbi_A Probable transcriptiona 21.8 81 0.0028 27.9 4.3 31 312-342 54-84 (142)
201 1pft_A TFIIB, PFTFIIBN; N-term 21.6 64 0.0022 24.0 3.0 31 635-671 5-35 (50)
202 2co5_A Viral protein F93; vira 21.5 61 0.0021 28.1 3.2 55 502-556 25-84 (99)
203 3neu_A LIN1836 protein; struct 21.5 2.2E+02 0.0076 25.2 7.2 91 491-593 26-117 (125)
204 3u1d_A Uncharacterized protein 21.5 1.2E+02 0.0042 28.4 5.5 53 501-557 45-109 (151)
205 2frh_A SARA, staphylococcal ac 21.2 75 0.0026 28.1 3.9 32 311-342 56-87 (127)
206 3bpv_A Transcriptional regulat 20.7 80 0.0027 27.8 4.0 31 311-341 46-76 (138)
207 2nnn_A Probable transcriptiona 20.6 89 0.003 27.5 4.3 30 312-341 56-85 (140)
208 4ev0_A Transcription regulator 20.3 76 0.0026 30.2 4.1 32 311-342 166-197 (216)
209 3ic7_A Putative transcriptiona 20.3 87 0.003 28.1 4.1 76 511-594 42-118 (126)
210 3cuo_A Uncharacterized HTH-typ 20.2 90 0.0031 25.9 4.0 31 312-342 42-72 (99)
211 1ku9_A Hypothetical protein MJ 20.2 1E+02 0.0035 27.4 4.7 31 312-342 45-75 (152)
212 3f2b_A DNA-directed DNA polyme 20.2 60 0.0021 40.0 3.8 17 566-582 437-453 (1041)
No 1
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=100.00 E-value=3.3e-140 Score=1233.28 Aligned_cols=603 Identities=22% Similarity=0.268 Sum_probs=479.4
Q ss_pred ceEEEEEcChHHHHHHHHHhCCCCCcccccCcccccceeeeeccccCCCceEEEEeccCcccccccccccCcCcCCCCCC
Q 046997 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPAD 87 (807)
Q Consensus 8 ~~~LiIaEKPs~Ak~IA~~Lg~~~~~~~~~G~~~~~~~~ef~~~~~g~~~~~~Vt~~~GHl~~l~~p~~y~~W~~~~p~~ 87 (807)
|+.||||||||+|++||++||.+ ++|||+.|||++|+.|+ ..|. +.+
T Consensus 5 mk~LvIaEkPs~Ak~Ia~~Lg~~----------------------------y~Vt~s~GHl~~l~~~~--~~~~---~~~ 51 (633)
T 2gai_A 5 VKKYIVVESPAKAKTIKSILGNE----------------------------YEVFASMGHIIDLPKSK--FGVD---LEK 51 (633)
T ss_dssp --CEEEESCHHHHHHHHHHHGGG----------------------------SEEEECCSCSEESCSSS--CCEE---TTT
T ss_pred CcEEEEEeCHHHHHHHHHHhCCC----------------------------CEEEecccccccCCccC--CCCC---ccc
Confidence 56799999999999999999742 48999999999998663 2343 333
Q ss_pred CCCCCcccccCCChHHHHHHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhhcCCCCeEEEEEecccCHHHHHHHHHc
Q 046997 88 LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQN 167 (807)
Q Consensus 88 L~~~p~~~~v~~~k~~~~~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~~~~~~~v~R~~~s~lt~~~I~~A~~n 167 (807)
.| .| .+.+.++++++++.|++++++|| ||||||||||||+|+|||+++++.. ++|+|+|||+||+++|++||+|
T Consensus 52 ~f-~p-~~~~~~~~~~~~~~lk~l~k~ad-iiiAtD~DREGE~I~~~i~~~~~~~---~~v~R~~fs~iT~~aI~~a~~~ 125 (633)
T 2gai_A 52 DF-EP-EFAVIKGKEKVVEKLKDLAKKGE-LLIASDMDREGEAIAWHIARVTNTL---GRKNRIVFSEITPRVIREAVKN 125 (633)
T ss_dssp TS-EE-CCEECTTCHHHHHHHHHHHHHSC-EEECCCSSHHHHHHHHHHHHHHTCT---TSSCBCCCSSCCHHHHHHHHHS
T ss_pred Cc-Cc-eEEECccHHHHHHHHHHHHhhCC-EEEcCCCCcccCHHHHHHHHHcCCC---CCeEEEEEccCCHHHHHHHHhC
Confidence 22 12 23455678899999999999999 9999999999999999999999753 5899999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHhHhhhccchHHHHHhhhhcccccccccCCcccccCccchhhHHHHHHHHHHHHcccccceEE
Q 046997 168 LVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247 (807)
Q Consensus 168 l~~~~~~l~~a~~aR~~~D~liG~n~SR~~Tl~~~~~~~~~~~~~~~~~lS~GRVQtPtL~lIv~Re~eI~~F~p~~y~~ 247 (807)
|+++|++|++||+||+++|||||||+||++|+.++ ..||+||||||||+|||+||+||++|+|++||+
T Consensus 126 ~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~~~~------------~~lS~GRVQtptL~lIv~Re~eI~~F~p~~y~~ 193 (633)
T 2gai_A 126 PREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFK------------SNLSAGRVQSATLKLVCDREREILRFVPKKYHR 193 (633)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------------CCCTTHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred CCCCcHHHHHHHHHhhHHHHHhhHHHCHHHHHhhh------------cccccCccchHHHHHHHHHHHHHHhCCCcceEE
Confidence 99999999999999999999999999999998653 379999999999999999999999999999999
Q ss_pred EEEEeecCCceEEEEe--ccCCcCCHHHHHHHHHHhccCCCeEEEEEEeeeeeeCCCCCCCHHHHHHHHHHhcCCCHHHH
Q 046997 248 INCSHKSEEGTATFSW--MRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHT 325 (807)
Q Consensus 248 i~~~~~~~~~~~~~~~--~~~r~~d~~~a~~~~~~~~~~~~~~V~~v~~k~~~~~pP~pf~l~~Lq~~ask~~g~s~~~t 325 (807)
|.+.+. + |.+.| ..++++|++.|+.++ .| ..++|++|++++++++||+||||++||++||++|||||++|
T Consensus 194 i~~~~~--~--~~a~~~~~~~~~~~~~~a~~~~-~~---~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~t 265 (633)
T 2gai_A 194 ITVNFD--G--LTAEIDVKEKKFFDAETLKEIQ-SI---DELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKT 265 (633)
T ss_dssp EEEEET--T--EEEEECCSSCCCCCHHHHHHHH-TC---CCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHH
T ss_pred EEEEEe--e--EEEEEecCCcccCCHHHHHHHH-hC---CCeEEEEEEEEEEEecCCCCccHHHHHHHHHHHcCCCHHHH
Confidence 999884 2 77787 346788999999999 77 36999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc--------CceeccCCCCcccCCcc--cHHHHHHHHhcCCCchhhHHhhcccccCCccCCCCCCCCCCCC
Q 046997 326 MKVAEDLYQA--------GFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395 (807)
Q Consensus 326 l~iaQ~LYE~--------g~ISYPRTds~~l~~~~--~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~aH 395 (807)
|++||+|||+ ||||||||||++||++. .+.+++... |+ ..+++..++.|++ +++.++||
T Consensus 266 m~iaQ~LYE~~~~~~~~~glITYpRTDs~~ls~~~~~~~~~~i~~~-----~g---~~~~~~~~r~~~~---~~~~~~aH 334 (633)
T 2gai_A 266 MMIAQQLYEGVETKDGHIAFITYMRTDSTRVSDYAKEEARNLITEV-----FG---EEYVGSKRERRKS---NAKIQDAH 334 (633)
T ss_dssp HHHHHHHHHCEECSSSEECCBCCSCCSCCCCCHHHHHHHHHHHHHH-----TC---GGGBC-----------------CC
T ss_pred HHHHHHHhhccccccCccceEEecCCCccccCHHHHHHHHHHHHHH-----hh---hhhcccCCccccC---CCCcCCCC
Confidence 9999999998 99999999999999875 234444332 22 2334322344432 12335699
Q ss_pred CCCcCCCCCCCC----CCCCHHHHHHHHHHHHHHHHhcCcccEEEEEEEEEEE--CCeEEEEEEEEEEecCeeeeecccc
Q 046997 396 PPIHPTKFSSGE----SRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINI--AGEVFSTSGRVILAKNYLDVYRFES 469 (807)
Q Consensus 396 ~aI~PT~~~~~~----~~Ls~~e~~vY~lI~rrfla~~~~~a~~~~t~v~~~~--~~~~F~a~g~~i~~~Gw~~v~~~~~ 469 (807)
||||||.....+ ..|+++|++||+||+|||||+||+||+|++|+|++.+ +++.|+++|++++++||++||..
T Consensus 335 ~AI~PT~~~~~p~~~~~~L~~~e~klY~LI~rrflA~~~~~a~~~~t~v~~~~~~~~~~F~a~g~~i~~~G~~~vy~~-- 412 (633)
T 2gai_A 335 EAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYEETRFVLRTKDGKYRFKGTVLKKIFDGYEKVWKT-- 412 (633)
T ss_dssp CCBCBSCTTSCHHHHTTTSCHHHHHHHHHHHHHHHHHTBCCEEEEEEEEEEECTTSSCEEEEEEEEEEECGGGGTSCC--
T ss_pred CCcccccccCChhhhhhcCCHHHHHHHHHHHHHHHHHhCchheEEEEEEEEEEeCCCcEEEEEEEEEecCCHHHhhcc--
Confidence 999999864321 4699999999999999999999999999999999999 99999999999999999999942
Q ss_pred cCCccCCccCCCCeeeeeeeEeecCccCCCCCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhH
Q 046997 470 WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549 (807)
Q Consensus 470 ~~~~~lP~l~~G~~~~~~~~~i~e~~T~PP~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G 549 (807)
+++..||.|++||.+.+.++.+.+++|+||+||||++||++||+.|||||||||+||++|++|+||.++++ .|+||++|
T Consensus 413 ~~~~~LP~l~~G~~~~~~~~~~~~~~T~PP~ryTEasLi~~Me~~GIGtpaT~A~iI~~L~~R~Yv~~~~k-~l~pT~~G 491 (633)
T 2gai_A 413 ERNTGEFPFEEGESVKPVVVKIEEQETKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKIRG-YLYPTIVG 491 (633)
T ss_dssp CCCBCCCCCCTTCEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHTCCCTTTHHHHHHHHHHTTSEEEETT-EEEEBHHH
T ss_pred cccccCCCcCCCCEEEEeEEEEeeeecCCCCCCCHHHHHHHhhccCCCCcccHHHHHHHHhhcCcEEEcCC-EEEEChhH
Confidence 34567999999999999999999999999999999999999999999999999999999999999998754 69999999
Q ss_pred HHHHhhccccCccccCchhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCcc
Q 046997 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629 (807)
Q Consensus 550 ~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~g~fl~cs~~p~~~~ 629 (807)
+.|++.|....++|++|+|||.||+.|++|++|+.++++||+++++.+.+.+...... +.+.. .-..| .-.....
T Consensus 492 ~~l~~~l~~~~~~l~~~~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~v~~~~~~---~~~~~-~~~~c-~cg~~~~ 566 (633)
T 2gai_A 492 SVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFDRNDRI---VVDFP-TNQKC-SCGKEMR 566 (633)
T ss_dssp HHHHHHHHHHSTTTTSHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTCCC---CCCEE-EEEEC-TTSCEEE
T ss_pred HHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHhh---hhhhc-ccchh-hcCceee
Confidence 9999999876668999999999999999999999999999999988776533221100 00000 00012 1000000
Q ss_pred cccccccccCCCCCcceEEEecCCCCceeeccCCCCCCcceecCCCccccccccCccCCCCCCceEEE
Q 046997 630 AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLI 697 (807)
Q Consensus 630 ~~~~~~~~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~~~l~~~ 697 (807)
......++||+|+.+.|+.+++++|+.||+|+|||+|+|++|.++ .+..||+ | ++++++
T Consensus 567 ~k~g~~G~CP~Cg~g~l~~r~~k~G~~f~gCs~yp~C~f~~~~~p-------~~~~Cp~-~-~~l~~~ 625 (633)
T 2gai_A 567 LSFGKYGFYLKCECGKTRSVKNDEIAVIDDGKIFLGRKDSESGSP-------DGRSVEG-K-GNLSEK 625 (633)
T ss_dssp EEEETTEEEEECSSSCCEECCTTSBCEEETTEEEC---------------------------------
T ss_pred ecccccccCcccCCCcceeecccCCCeEEeCCCCcCCCCeecCCc-------cCCcCCC-C-CeEEEE
Confidence 111234679999438899999999987899999999999999743 4678999 7 566644
No 2
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=100.00 E-value=2.9e-137 Score=1210.17 Aligned_cols=587 Identities=23% Similarity=0.321 Sum_probs=487.0
Q ss_pred EEEEEcChHHHHHHHHHhCCCCCcccccCcccccceeeeeccccCCCceEEEEeccCccccccccccc----CcCcCCCC
Q 046997 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERY----RKWHSCDP 85 (807)
Q Consensus 10 ~LiIaEKPs~Ak~IA~~Lg~~~~~~~~~G~~~~~~~~ef~~~~~g~~~~~~Vt~~~GHl~~l~~p~~y----~~W~~~~p 85 (807)
.||||||||+|++||++||+. .++++|+ ++ + |. +++|||++|||++|++|++| ++|+..
T Consensus 2 ~LiIaEKPs~Ak~Ia~~L~g~--~~r~~gy------~e----~-g~--~~~Vt~~~GHl~~L~~p~~y~~~~k~W~~~-- 64 (659)
T 1i7d_A 2 RLFIAEKPSLARAIADVLPKP--HRKGDGF------IE----C-GN--GQVVTWCIGHLLEQAQPDAYDSRYARWNLA-- 64 (659)
T ss_dssp EEEEESSHHHHHHHHTTSCSC--CEEETTE------EE----E-TT--TEEEEECSSCSEEECCHHHHCGGGGSCCST--
T ss_pred EEEEEECHHHHHHHHHHhcCC--cccCCCc------Ee----e-CC--CEEEEeccchhhcCCCccccchhccccccC--
Confidence 499999999999999999644 3567773 22 1 43 58999999999999988765 456543
Q ss_pred CCCCCCC--cccccCCChHHHHHHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhhc-CCCCeEEEEEecccCHHHHH
Q 046997 86 ADLYHAP--VRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAV-NCHLVLRRARFSALIDREIH 162 (807)
Q Consensus 86 ~~L~~~p--~~~~v~~~k~~~~~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~~-~~~~~v~R~~~s~lt~~~I~ 162 (807)
+|+..| +...+.++++++++.|++++++||.||||||||||||+|||||+++++.. +++++|+|+|||+||+++|+
T Consensus 65 -~lpi~p~~~~~~v~~~~~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~~~~~~~v~R~~fs~iT~~aI~ 143 (659)
T 1i7d_A 65 -DLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVE 143 (659)
T ss_dssp -TCSCCCSSCCEEECGGGHHHHHHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCHHHHHTCEECCCSCCSHHHHH
T ss_pred -CcccccccceeeecccHHHHHHHHHHHHhcCCeEEEcCCCCCCCCHHHHHHHHHhCccccCCCceEEEEEccCCHHHHH
Confidence 343333 44456677899999999999999999999999999999999999998751 11357999999999999999
Q ss_pred HHHHcCCCCC--cchHHHHHHHHHHhHhhhccchHHHHHhhhhcccccccccCCcccccCccchhhHHHHHHHHHHHHcc
Q 046997 163 QAVQNLVDPN--QWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240 (807)
Q Consensus 163 ~A~~nl~~~~--~~l~~a~~aR~~~D~liG~n~SR~~Tl~~~~~~~~~~~~~~~~~lS~GRVQtPtL~lIv~Re~eI~~F 240 (807)
+||+||++++ ++|++||+||+++|||||||+||++|+++|+.+ .+.+||+||||||||+|||+||+||++|
T Consensus 144 ~A~~nlr~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~lt~~~r~~~-------~~~~lS~GRVQTPtL~lIv~Re~eI~~F 216 (659)
T 1i7d_A 144 RAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAG-------YQGVLSVGRVQTPVLGLVVRRDEEIENF 216 (659)
T ss_dssp HHHTTCEEGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------CCSCCCCCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcC-------CCCceecCccccchHHHHHHHHHHHHhC
Confidence 9999999987 699999999999999999999999999887521 1248999999999999999999999999
Q ss_pred cccceEEEEEEe-ecCCceEEEEec-----------cCCcCCHHHHHHHHHHhccCCCeEEEEEEeeeeeeCCCCCCCHH
Q 046997 241 ESEEFWTINCSH-KSEEGTATFSWM-----------RGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308 (807)
Q Consensus 241 ~p~~y~~i~~~~-~~~~~~~~~~~~-----------~~r~~d~~~a~~~~~~~~~~~~~~V~~v~~k~~~~~pP~pf~l~ 308 (807)
+|++||+|.+.+ ..+++.|.+.|. +++++|++.|+.+++.|.+. .++|++|+.++++++||+||||+
T Consensus 217 ~p~~yw~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~~~~~~~~~-~~~V~~v~~k~~~~~pP~pf~ts 295 (659)
T 1i7d_A 217 VAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQ-PAIVTSYNDKRESESAPLPFSLS 295 (659)
T ss_dssp CCCEEEEEEEEEECTTCCEEEEEECCCGGGTTTBCTTCCBCCHHHHHHHHHHHSSC-EEECCEEEEEEEEECCCCSBCHH
T ss_pred CCcceEEEEEEEecCCCcEEEEEEEeccccccccccccccCCHHHHHHHHHHhccC-CeEEEEEEeEEEEecCCCCccHH
Confidence 999999999999 556677999993 45899999999999999864 79999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhh-cCceeccCCCCcccCCcc--cHHHHHHHHhc-CCCchhhHHhhcc--cccCCc
Q 046997 309 ELEKRASRYFRMSSEHTMKVAEDLYQ-AGFISYPRTETDSFSSGT--NLHGIVQEQIG-HPDWGPYAQRLLD--HAAGLW 382 (807)
Q Consensus 309 ~Lq~~ask~~g~s~~~tl~iaQ~LYE-~g~ISYPRTds~~l~~~~--~~~~il~~~~~-~~~~~~~~~~~l~--~~~~~~ 382 (807)
+||++||++|||||++||++||+||| +||||||||||++||++. ++.++|..+.. .+.|..++ +++ ..++.|
T Consensus 296 ~LQ~~As~~lg~sa~~Tm~iAQ~LYE~~glITYpRTDS~~ls~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~r~~ 373 (659)
T 1i7d_A 296 ALQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQP--VVDPDIRNRCW 373 (659)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHTSCCBSCSSCCCCCBCGGGGGGHHHHHHHHHHHSTTTCCCT--TCCTTCCCTTB
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCeEeccCCCCcccCHHHHHHHHHHHHHHhccchhhhhhh--hcccccccccc
Confidence 99999999999999999999999999 799999999999999986 67888877642 23333220 001 112333
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCcccEEEEEEEEEEECCeEEEEEEEEEEecCee
Q 046997 383 RNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYL 462 (807)
Q Consensus 383 ~~~~~~~~~~~aH~aI~PT~~~~~~~~Ls~~e~~vY~lI~rrfla~~~~~a~~~~t~v~~~~~~~~F~a~g~~i~~~Gw~ 462 (807)
++ ..++||||||||...+... |+++|++||+||+|||||+||+||+|++|+|++.++++.|+++|++++++||+
T Consensus 374 ~~-----~kv~aH~AI~PT~~~~~~~-Ls~de~klY~LI~rRflA~~~~~a~~~~t~v~~~~~~~~F~a~G~~i~~~Gw~ 447 (659)
T 1i7d_A 374 DD-----KKVDAHHAIIPTARSSAIN-LTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWR 447 (659)
T ss_dssp CG-----GGCCSSCCBCBCSCCSCCC-CCHHHHHHHHHHHHHHHHTTSCCEEEEEEEEEECSTTCCEEECEEEEEECGGG
T ss_pred CC-----CccCCCCCcCCcCCCCccC-CCHHHHHHHHHHHHHHHHHhCchheEEEEEEEEEECCEEEEEEEEEEecCChh
Confidence 21 1246999999999765556 99999999999999999999999999999999999999999999999999999
Q ss_pred eeecccc-c---CCccCCccCCCCeeeeeeeEeecCccCCCCCCCHHHHHHHHHh-----------------CCCCCccc
Q 046997 463 DVYRFES-W---GGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDK-----------------AGIGTDAT 521 (807)
Q Consensus 463 ~v~~~~~-~---~~~~lP~l~~G~~~~~~~~~i~e~~T~PP~~~Tea~Li~~Me~-----------------~GIGTpAT 521 (807)
+||+++. + ++..||.|++||.+.+.++.+.+++|+||+||||++||++||+ .|||||||
T Consensus 448 ~vy~~~~~~~~~~~~~LP~l~~Ge~~~~~~~~~~e~~T~PP~ryTEasLi~~Me~~~k~v~d~e~~~~lk~~~GIGtpAT 527 (659)
T 1i7d_A 448 TLLGSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEAT 527 (659)
T ss_dssp GGSCTTGGGTTCEECCCCCCCTTCEEEEEEEEEEEEECCCCCCEEHHHHHHHHHTGGGGCCCHHHHHHHHHTTSSSCTTT
T ss_pred heecccccccccccccCCccCCCCEEEEeEeEEeeeecCCCCCCCHHHHHHHHHHhccccCCHHHHHHHhhccCCCcccc
Confidence 9997532 1 2346999999999999999999999999999999999999994 69999999
Q ss_pred hHHHHHhhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 046997 522 MHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601 (807)
Q Consensus 522 ra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~~ 601 (807)
||+||++|++||||+++++ .|+||++|+.|++.|+. .|++|+|||.||+.|++|++|+.++++||+++++++++.+
T Consensus 528 rA~iIe~L~~R~Yv~~~~k-~l~pT~~G~~l~~~l~~---~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~v 603 (659)
T 1i7d_A 528 RAGIIELLFKRGFLTKKGR-YIHSTDAGKALFHSLPE---MATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLI 603 (659)
T ss_dssp HHHHHHHHHHTTSEEESSS-EEEECHHHHHHHHHSCH---HHHSTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEeecCC-EEeECHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998754 69999999999998875 3999999999999999999999999999999999998766
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCCCCcccccccccccCCCCCcceEEEecCCCCc
Q 046997 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNL 656 (807)
Q Consensus 602 ~~~~~~~~k~~~~~g~fl~cs~~p~~~~~~~~~~~~CP~C~g~~lv~r~~k~G~~ 656 (807)
.+.... .+. .....+||+| |+.|+.++++.|+.
T Consensus 604 ~~~~~~------~~~---------------~~~~~~CP~C-g~~l~~~~~~~g~~ 636 (659)
T 1i7d_A 604 DQAKRT------PVR---------------QFRGIVAPGS-GGSADKKKAAPRKR 636 (659)
T ss_dssp HHHHTS------CSG---------------GGTTCCCC-----------------
T ss_pred HHHHhc------ccc---------------cccCCCCCCC-CCeeEEecCcCCCc
Confidence 543211 110 1235689999 67888887766653
No 3
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=100.00 E-value=1.4e-130 Score=1145.09 Aligned_cols=541 Identities=23% Similarity=0.337 Sum_probs=458.1
Q ss_pred CceEEEEEcChHHHHHHHHHhCCCCCcccccCcccccceeeeeccccCCCceEEEEeccCcccccccc------------
Q 046997 7 PINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFD------------ 74 (807)
Q Consensus 7 ~~~~LiIaEKPs~Ak~IA~~Lg~~~~~~~~~G~~~~~~~~ef~~~~~g~~~~~~Vt~~~GHl~~l~~p------------ 74 (807)
|++.||||||||+|++||++||.+ ++|||++|||++|..|
T Consensus 1 M~k~LiIaEkPs~Ak~Ia~~Lg~~----------------------------~~Vt~~~GHl~~L~~~~~~~~~~~~~~~ 52 (592)
T 1mw9_X 1 MGKALVIVESPAKAKTINKYLGSD----------------------------YVVKSSVGHIRDLPTSGSAAKKSADSTS 52 (592)
T ss_dssp -CCEEEEESCHHHHHHHHTTSCTT----------------------------EEEEECCSCCEESCC-------------
T ss_pred CCceEEEEECHHHHHHHHHHhCCC----------------------------cEEEeeccccccCCcccccccccccccc
Confidence 678899999999999999999842 5899999999999764
Q ss_pred ---cccCcC--cC-------CCCCCCCCCCcccccCCChHHHHHHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhhc
Q 046997 75 ---ERYRKW--HS-------CDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAV 142 (807)
Q Consensus 75 ---~~y~~W--~~-------~~p~~L~~~p~~~~v~~~k~~~~~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~~ 142 (807)
++|+.| .. .+|.+.+. | .+.+.++++++++.|++++++||.||||||||||||+|||||+++|+..
T Consensus 53 ~~p~~y~~~~~~~~~~~~l~i~p~~~f~-~-~~~~~~~k~~~~~~lk~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~ 130 (592)
T 1mw9_X 53 TKTAKKPKKDERGALVNRMGVDPWHNWE-A-HYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGD 130 (592)
T ss_dssp ----------CHHHHHHHHTEETTTTTE-E-CCEECTTCHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHHCSC
T ss_pred cchhhhchhhhcccchhcCCcCccccCc-e-eEEEcccHHHHHHHHHHHHhcCCeEEEcCCCCccccHHHHHHHHHhCCC
Confidence 456532 11 12222111 1 2344567889999999999999999999999999999999999999753
Q ss_pred CCCCeEEEEEecccCHHHHHHHHHcCCCCCcchHHHHHHHHHHhHhhhccchHHHHHhhhhcccccccccCCcccccCcc
Q 046997 143 NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPC 222 (807)
Q Consensus 143 ~~~~~v~R~~~s~lt~~~I~~A~~nl~~~~~~l~~a~~aR~~~D~liG~n~SR~~Tl~~~~~~~~~~~~~~~~~lS~GRV 222 (807)
+++|+|+|||+||+++|++||+|+++++.+|++||+||+++|||||||+||++|..++ ..||+|||
T Consensus 131 --~~~v~R~~fs~iT~~aI~~A~~~~~~~~~~l~~A~~aR~~~D~lvG~n~Sr~l~~~~~------------~~lS~GRV 196 (592)
T 1mw9_X 131 --DARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIA------------RGLSAGRV 196 (592)
T ss_dssp --GGGEEECCCSSCSHHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------TTCCCCTT
T ss_pred --CCCeEEEEEccCCHHHHHHHHhCCccccHHHHHHHHHHHHHHHHhhHhhhHHHHhhhc------------cccccCcc
Confidence 2479999999999999999999999999999999999999999999999999987542 37999999
Q ss_pred chhhHHHHHHHHHHHHcccccceEEEEEEeec-CCceEEEEec--cC---CcCCHHHHHHHHHHhccCCCeEEEEEEeee
Q 046997 223 QFPTLGFVVERYWEIQAHESEEFWTINCSHKS-EEGTATFSWM--RG---HLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296 (807)
Q Consensus 223 QtPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~-~~~~~~~~~~--~~---r~~d~~~a~~~~~~~~~~~~~~V~~v~~k~ 296 (807)
|||||+|||+||+||++|+|++||.|.+.+.. ++..|.+.|. ++ +++|++.|+.+++.|.+ ..++|++|++++
T Consensus 197 QtptL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~~~~V~~v~~k~ 275 (592)
T 1mw9_X 197 QSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEK-ARYSVLEREDKP 275 (592)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECTTCCEEEEEEEEETTEECCCCSHHHHHHHHHHHHH-CCEEEEEEEEEE
T ss_pred chhHHHHHHHHHHHHHhCCCcceEEEEEEEecCCCcEEEEEEEecCCcccccCCHHHHHHHHHHhcC-CCeEEEEEEEEE
Confidence 99999999999999999999999999999865 3446777764 23 56789999999999875 469999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCceeccCCCCcccCCcc--cHHHHHHHHhcCCCchhhHHhh
Q 046997 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRL 374 (807)
Q Consensus 297 ~~~~pP~pf~l~~Lq~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPRTds~~l~~~~--~~~~il~~~~~~~~~~~~~~~~ 374 (807)
+++.||+||+|++||++||++|||||++||++||+|||+||||||||||++||++. .+.+++..+ |+ ..+
T Consensus 276 ~~~~pP~pf~ts~LQ~~As~~lg~sa~~tm~iAQ~LYE~glITYpRTDs~~ls~~~~~~~~~~i~~~-----~g---~~~ 347 (592)
T 1mw9_X 276 TTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDN-----FG---KKY 347 (592)
T ss_dssp EEECCCCCBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTSBCCSCCCCCCCCHHHHHHHHHHHHHH-----TC---GGG
T ss_pred EeccCCCCccHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCeeeccCCCCCccCHHHHHHHHHHHHHh-----hh---hhh
Confidence 99999999999999999999999999999999999999999999999999999864 334444432 22 223
Q ss_pred cccccCCccCCCCCCCCCCCCCCCcCCCCCC---CCCCCCHHHHHHHHHHHHHHHHhcCcccEEEEEEEEEEECCeEEEE
Q 046997 375 LDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS---GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFST 451 (807)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~aH~aI~PT~~~~---~~~~Ls~~e~~vY~lI~rrfla~~~~~a~~~~t~v~~~~~~~~F~a 451 (807)
++..++.|.+. .+.++||||||||.... ....|+++|++||+||+|||||+||+||+|++|+|++.++++.|++
T Consensus 348 ~~~~~~~~~~~---~~~~~aH~AI~PT~~~~~~~~l~~Ls~~e~klY~LI~rrflA~~~~~a~~~~t~v~~~~~~~~F~a 424 (592)
T 1mw9_X 348 LPESPNQYASK---ENSQEAREAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKA 424 (592)
T ss_dssp SCSSCCCCC-----------CCCBCBSCTTCCGGGCSSCCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEETTEEEEE
T ss_pred cccCCccccCC---CCCCCCCCCEecccCccCccchhhCCHHHHHHHHHHHHHHHHHhCchhEEEEEEEEEEECCEEEEE
Confidence 43223334321 22467999999997532 2367999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCeeeeecccc--cCCccCCccCCCCeeeeeeeEeecCccCCCCCCCHHHHHHHHHhCCCCCccchHHHHHhh
Q 046997 452 SGRVILAKNYLDVYRFES--WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKL 529 (807)
Q Consensus 452 ~g~~i~~~Gw~~v~~~~~--~~~~~lP~l~~G~~~~~~~~~i~e~~T~PP~~~Tea~Li~~Me~~GIGTpATra~iI~~L 529 (807)
+|++++++||+.||+++. +++..||.|++|+.+.+.++.+.+++|+||+||||++||++||+.|||||||||+||++|
T Consensus 425 ~g~~i~~~Gw~~vy~~~~~~~~~~~LP~l~~G~~~~~~~~~~~~~~T~PP~ryTEasLi~~Me~~GIGtpATrA~iI~~L 504 (592)
T 1mw9_X 425 RGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTI 504 (592)
T ss_dssp EEEEEEECGGGGGSCCC----CCCCCCCCCTTCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHTTCCCTTTHHHHHHHH
T ss_pred EEEEEeeCChHHhcCccccccccccccccCCCCEeEeeEeEEeeeeccCCCCCCHHHHHHHHHhcCCCchhhHHHHHHHH
Confidence 999999999999997543 245579999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEcCCceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH
Q 046997 530 LDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA 604 (807)
Q Consensus 530 ~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~~~~~ 604 (807)
++||||.++++ .|+||++|+.|++.|....+.|++|+|||.||+.|++|++|+.++++||+++++.+++.+..+
T Consensus 505 ~~R~Yv~~~~k-~l~pT~~G~~l~~~L~~~~~~l~~~~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~~~~~ 578 (592)
T 1mw9_X 505 QDRGYVRVENR-RFYAEKMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQLDKA 578 (592)
T ss_dssp HHTTSEEEETT-EEEECHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCceeecCC-EeeecHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998764 689999999999988765557999999999999999999999999999999999888765443
No 4
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.7e-116 Score=1094.50 Aligned_cols=524 Identities=22% Similarity=0.262 Sum_probs=440.8
Q ss_pred CCceEEEEEcChHHHHHHHHHhCCCCCcccccCcccccceeeeeccccCCCceEEEEeccCcccccccccccCcCcCCCC
Q 046997 6 RPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDP 85 (807)
Q Consensus 6 ~~~~~LiIaEKPs~Ak~IA~~Lg~~~~~~~~~G~~~~~~~~ef~~~~~g~~~~~~Vt~~~GHl~~l~~p~~y~~W~~~~p 85 (807)
-|+++||||||||+|++||++||.+. .++.+|+ .+|||.. |+. .++|||+.|||++|+.|++|..|...+
T Consensus 539 ~m~~~LvIaEkPs~Ak~ia~~Lg~~~-~~~~~~~----~~ye~~~---~~~-~~~v~~~~GHl~~l~~~~~~~~~~~~~- 608 (1104)
T 4ddu_A 539 TSRSLLIIVESPTKAETLSRFLGRAS-SRKERNI----IVHEAVT---GEG-VILFTATRGHVYDLVTKGGIHGVEEEN- 608 (1104)
T ss_dssp CCBCEEEEESCHHHHHHHHHHHTCCE-EEEETTE----EEEEEEE---TTE-EEEEEECCSCCEEECSSSTBTTBEEET-
T ss_pred hcCCeEEEEECHHHHHHHHHHhCCCc-cccCCCc----eeEEEec---CCc-eEEEEEeccccccCCCccccCcccccc-
Confidence 48899999999999999999999864 2233443 3455432 321 359999999999999998886554322
Q ss_pred CCCCCCCc---cc---------------------ccCCChHHHHHHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhh
Q 046997 86 ADLYHAPV---RK---------------------HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRA 141 (807)
Q Consensus 86 ~~L~~~p~---~~---------------------~v~~~k~~~~~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~ 141 (807)
+...|. ++ .+..+++++++.|++++++||+||||||||||||+|||||+++++.
T Consensus 609 --~~~~p~y~~~~~~~~~~~~f~~~~~~~p~~~~~~~~~~~~~~~~lk~~~~~~d~i~~atD~DrEGE~I~~~i~~~~~~ 686 (1104)
T 4ddu_A 609 --GKFVPVYNSLKRCRDCGYQFTEDRDECPVCSSKNIDDKTETLRALREISLEADEILVATDPDVEGEKISWDVTQYLLP 686 (1104)
T ss_dssp --TEEECEEEECEEETTTCCEECSCCSSCTTTCCSCEEEHHHHHHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHTT
T ss_pred --CCcCccccccccccchhhhhccccccccccccccCccHHHHHHHHHHHHhcCCEEEECcCCchhHHHHHHHHHHHhcc
Confidence 111121 11 0112688999999999999999999999999999999999999875
Q ss_pred cCCCCeEEEEEecccCHHHHHHHHHcCCCCCcchHHHHHHHHHHhHhhhccchHHHHHhhhhcccccccccCCcccccCc
Q 046997 142 VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGP 221 (807)
Q Consensus 142 ~~~~~~v~R~~~s~lt~~~I~~A~~nl~~~~~~l~~a~~aR~~~D~liG~n~SR~~Tl~~~~~~~~~~~~~~~~~lS~GR 221 (807)
. +++|+|+|||++|+++|++||+||+++|++|++||+||+++|||||||+||++|..++ +.+||+||
T Consensus 687 ~--~~~~~R~~f~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~-----------~~~lS~GR 753 (1104)
T 4ddu_A 687 S--TRSLRRIEMHEITRYGFKKARESVRFVDFNLVKAQIVRRVQDRWIGFELSGKLQKRFG-----------RSNLSAGR 753 (1104)
T ss_dssp T--CSCEEECCCSSSSHHHHHHHHHTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CSCCCCCH
T ss_pred c--CCCeEEEEEccCCHHHHHHHHhCCCcCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhC-----------CcccccCc
Confidence 3 3479999999999999999999999999999999999999999999999999987653 23799999
Q ss_pred cchhhHHHHHHHHHHHHcccccceEEEEEEeecCCceEEEEeccCCcCCHHHHHHHHHHhccCCCeEEEEEEeeeeeeCC
Q 046997 222 CQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301 (807)
Q Consensus 222 VQtPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~r~~d~~~a~~~~~~~~~~~~~~V~~v~~k~~~~~p 301 (807)
||||||+|||+||+||+ +|++||+|. ...++..+.+.|.++ .+.++|++|++++++++|
T Consensus 754 VQtptL~liv~Re~ei~--~~~~~~~i~--~~~~~~~~~~~~~~~-----------------~~~~~V~~v~~k~~~~~p 812 (1104)
T 4ddu_A 754 VQSTVLGWIVEREEEYK--KSEKDFTLL--VLENGVNLEVEGKIA-----------------DDVVTVVELQEAEEEKNP 812 (1104)
T ss_dssp HHHHHHHHHHHHHHTTT--TCCCCEEEE--EETTSCEEEEESCCC-----------------CCEEEEEEEEEEEEEECC
T ss_pred cccHHHHHHHHHHHHHh--ccCcEEEEE--EecCcEEEEeecccc-----------------CCcEEEEEEEeeeEEecC
Confidence 99999999999999999 678999993 334556677776542 246899999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCceeccCCCCcccCCcc--cHHHHHHHHhcCCCchhhHHhhccccc
Q 046997 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDHAA 379 (807)
Q Consensus 302 P~pf~l~~Lq~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPRTds~~l~~~~--~~~~il~~~~~~~~~~~~~~~~l~~~~ 379 (807)
|+||||++||++||++|||||++||++||+|||+||||||||||++||++. .+.+++..+.+ ..++
T Consensus 813 p~pf~t~~Lq~~a~~~~g~s~~~tm~iaQ~LYe~g~iTYpRTds~~l~~~~~~~~~~~i~~~~~--------~~~~---- 880 (1104)
T 4ddu_A 813 LPPYTTSSALSEISQKLRLGVQEVMDILQDLFEKGFITYHRTDSTRISLEGQNVARTYLRKIGK--------EDIF---- 880 (1104)
T ss_dssp CCCBCHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTSBSCSCCSCCCCCHHHHHHHHHHHHHHSC--------GGGB----
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCceeecCCCccccCHHHHHHHHHHHHHhhC--------cccc----
Confidence 999999999999999999999999999999999999999999999999753 22333333211 1111
Q ss_pred CCccCCCCCCCCCCCCCCCcCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHhcCcccEEEEEEEEEEECCeE
Q 046997 380 GLWRNPGSGGHDDKAHPPIHPTKFSS-----------GESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448 (807)
Q Consensus 380 ~~~~~~~~~~~~~~aH~aI~PT~~~~-----------~~~~Ls~~e~~vY~lI~rrfla~~~~~a~~~~t~v~~~~~~~~ 448 (807)
.|+. .++++||||||||...+ ....|+++|++||+||||||||+||+||+|++|+|++.++++.
T Consensus 881 ----~~r~-~~~~~aH~aI~Pt~~~~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~~t~v~~~~~~~~ 955 (1104)
T 4ddu_A 881 ----MGRS-WSTEGAHEAIRPVKPIDARELEEMIEEGLIADLTKKHLRVYELIFNRFLASQSAAVKVKKQIVTVDVDGKR 955 (1104)
T ss_dssp ----CCCC-CCSSCSSCCBCBSSSCCHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHHHHBCCEEEEEEEEEEESSSCE
T ss_pred ----CCCC-CCCCCCCcCcCCCccCChHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHhCCceeEEEEEEEEEECCEE
Confidence 2322 23578999999997532 1237999999999999999999999999999999999999999
Q ss_pred EEEEEE-EEEecCeeeeecccccCCccCCccCCCCeeeeeeeEeecCccCCCCCCCHHHHHHHHHhCCCCCccchHHHHH
Q 046997 449 FSTSGR-VILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIK 527 (807)
Q Consensus 449 F~a~g~-~i~~~Gw~~v~~~~~~~~~~lP~l~~G~~~~~~~~~i~e~~T~PP~~~Tea~Li~~Me~~GIGTpATra~iI~ 527 (807)
|+++|+ +++++||++||+. ..||.+++| .+.+.++ ..++|+||+|||||+||++||+.|||||||||+||+
T Consensus 956 f~~~g~~~i~~~G~~~v~~~-----~~lp~l~~g-~~~~~~~--~~~~~~~p~~~tea~Li~~me~~GIGtpaT~a~iI~ 1027 (1104)
T 4ddu_A 956 MGIEQIVEILRDGWNLFVPL-----TVSPRFEHR-TYKIKEK--KFYKKHTVPLFTQASIVEEMKKRGIGRPSTYAKIVE 1027 (1104)
T ss_dssp EEEEEEEEEEECSGGGTSCC-----CCCCCCCSS-EEEEEEE--EEECCCSSCCBCHHHHHHHHHHHTCSCTTTHHHHHH
T ss_pred EEEEEEEEEEECCHHHhccc-----ccCCCCCCC-ceEEEEe--eeeecCCCCCCCHHHHHHHHHhcCCCCccchHHHHH
Confidence 999997 7899999999962 469999999 5666544 447889999999999999999999999999999999
Q ss_pred hhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 046997 528 KLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600 (807)
Q Consensus 528 ~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~ 600 (807)
+|++|+||++++++.|+||++|+.|++.|....++|++|+|||.||+.|++|++|+.++++||+++++.+++.
T Consensus 1028 ~l~~r~Yv~~~~~~~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~l~~I~~G~~~~~~~l~~~~~~~~~~ 1100 (1104)
T 4ddu_A 1028 VLFRRGYVYEDKYKRVRPTRFGVMVYSYLKERYEKYVTEETTRRLEEIMDKVERGEEDYQATLRLLYEEIKSL 1100 (1104)
T ss_dssp HHHHTTSEEECTTCCEEECHHHHHHHHHHHHHCGGGTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEcCCCeEeEchHHHHHHHHHHHhchhhcCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999998763579999999999999876666899999999999999999999999999999999987763
No 5
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.4e-113 Score=1069.69 Aligned_cols=512 Identities=20% Similarity=0.271 Sum_probs=428.3
Q ss_pred CCceEEEEEcChHHHHHHHHHhCCCCCcccccCcccccceeeeeccccCCCceEEEEeccCcccccccccccC-cCcCCC
Q 046997 6 RPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYR-KWHSCD 84 (807)
Q Consensus 6 ~~~~~LiIaEKPs~Ak~IA~~Lg~~~~~~~~~G~~~~~~~~ef~~~~~g~~~~~~Vt~~~GHl~~l~~p~~y~-~W~~~~ 84 (807)
.|+++||||||||+|++||++||... ++++| |.++|||. .|+ +.++|||+.|||++|++|++|. .|. .+
T Consensus 503 ~m~~~LiIaEkPs~ak~ia~~Lg~~~--~~~~~---~~~~ye~~---~~~-~~~~vt~~~GHl~~l~~~~~~~~~~~-~~ 572 (1054)
T 1gku_B 503 LIKPALFIVESPTKARQISRFFGKPS--VKVLD---GAVVYEIP---MQK-YVLMVTASIGHVVDLITNRGFHGVLV-NG 572 (1054)
T ss_dssp CCEEEEEEESCHHHHHHHHGGGEECE--EEEET---TEEEEEEE---CSS-EEEEEEECCSCSEEECSSSSTTSSCC-SS
T ss_pred ccCCEEEEEECHHHHHHHHHHhCCCc--ccCCC---CceeEEee---cCC-ceEEEEEeccccccCCCchhhcCccc-cc
Confidence 36789999999999999999999753 34445 33456653 232 2469999999999999998763 454 21
Q ss_pred CCCCCCCCccc---------------------ccCCChHHHHHHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhhcC
Q 046997 85 PADLYHAPVRK---------------------HVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVN 143 (807)
Q Consensus 85 p~~L~~~p~~~---------------------~v~~~k~~~~~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~~~ 143 (807)
+ -++.+|..+ .+.++++++++.|++++++||.||||||||||||+|||||+++++.
T Consensus 573 ~-~~P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~l~~~~d~ii~atD~DrEGE~I~~~i~~~~~~-- 649 (1054)
T 1gku_B 573 R-FVPVYASIKRCRDCGYQFTEDRESCPKCGSENVDNSRSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLKNLLSG-- 649 (1054)
T ss_dssp S-CCCEEEECC------------------------CCHHHHHHHHHHHHHHHSEEEECCCSSHHHHHHHHHHHHHHTT--
T ss_pred C-cCCcccccccccchhhhcccccccccccccccCccHHHHHHHHHHHHhcCCEEEECCCCChhhhHHHHHHHHHhCC--
Confidence 1 022222111 1334788999999999999999999999999999999999999943
Q ss_pred CCCeEEEEEecccCHHHHHHHHHcCCCCCcchHHHHHHHHHHhHhhhccchHHHHHhhhhcccccccccCCcccccCccc
Q 046997 144 CHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQ 223 (807)
Q Consensus 144 ~~~~v~R~~~s~lt~~~I~~A~~nl~~~~~~l~~a~~aR~~~D~liG~n~SR~~Tl~~~~~~~~~~~~~~~~~lS~GRVQ 223 (807)
+++|+|+|||++|+++|++||+||+++|.+|++||+||+++|||||||+||++|..+. +..+|+||||
T Consensus 650 -~~~~~R~~~~~it~~aI~~a~~~~~~~~~~l~~a~~aR~~~D~lvG~~~sr~l~~~~~-----------~~~lS~GRVQ 717 (1054)
T 1gku_B 650 -CGAVKRAEFHEVTRRAILEALESLRDVDENLVKAQVVRRIEDRWIGFVLSQKLWERFN-----------NRNLSAGRAQ 717 (1054)
T ss_dssp -SSEEEECCCSBCSHHHHHHHHTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CSSCCCCTTH
T ss_pred -CCCeEEEEEccCCHHHHHHHHhCCCCCcHhHHHHHHhHHHHHHHHHHHhCHHHHHhcc-----------Cceeeecccc
Confidence 4589999999999999999999999999999999999999999999999999886432 2489999999
Q ss_pred hhhHHHHHHHHHHHHcccccceEEEEEEeecCCceEEEEeccCCcCCHHHHHHHHHHhccCCCeEEEEEEeeeeeeCCCC
Q 046997 224 FPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303 (807)
Q Consensus 224 tPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~r~~d~~~a~~~~~~~~~~~~~~V~~v~~k~~~~~pP~ 303 (807)
||||+|||+||+|| +|++||.+. ++..+.+.|.++ .+ .++|++|++++++++||+
T Consensus 718 tptL~~iv~Re~ei---~~~~~~~~~-----~~~~~~~~~~~~-------------~~----~~~V~~v~~k~~~~~pp~ 772 (1054)
T 1gku_B 718 TLVLGWIIDRFQES---RERRKIAIV-----RDFDLVLEHDEE-------------EF----DLTIKLVEEREELRTPLP 772 (1054)
T ss_dssp HHHHHHHHHHHTGG---GSEEEEEEE-----TTTTEEESCCCS-------------EE----EEEEEEEEEEEEEECCCC
T ss_pred chHHHHHHHHHHhh---CCcCcEEEE-----CCEEEEeccccc-------------ce----EEEEEEEEeeEEEecCCC
Confidence 99999999999999 688999874 455566554321 11 489999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCceeccCCCCcccCCcccHHHHHHHHhcCCCchhhHHhhcccccCCcc
Q 046997 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWR 383 (807)
Q Consensus 304 pf~l~~Lq~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPRTds~~l~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (807)
||||++||++||++|||||++||++||+|||+||||||||||++||++. .+.++.+.+. .+
T Consensus 773 pf~~~~Lq~~a~~~~g~s~~~tm~iaQ~LYe~g~iTYpRTds~~l~~~~--~~~~~~~~~~----------------~~- 833 (1054)
T 1gku_B 773 PYTTETMLSDANRILKFSVKQTMQIAQELFENGLITYHRTDSTRVSDVG--QRIAKEYLGD----------------DF- 833 (1054)
T ss_dssp CBCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTTSBBCSSCCCCCCCHHH--HHHHHHHHTT----------------SB-
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCceeecCCCccccCHHH--HHHHHHHhhh----------------hh-
Confidence 9999999999999999999999999999999999999999999999864 2333333210 01
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHhcCcccEEEEEEEEEEECCeEEE
Q 046997 384 NPGSGGHDDKAHPPIHPTKFSSG-------------ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450 (807)
Q Consensus 384 ~~~~~~~~~~aH~aI~PT~~~~~-------------~~~Ls~~e~~vY~lI~rrfla~~~~~a~~~~t~v~~~~~~~~F~ 450 (807)
.|+.. .+++||||||||...+. ...|+++|++||+||+|||||+||+||+|++|+|++.++++.|+
T Consensus 834 ~~r~~-~~~~aH~aI~Pt~~~~~~~~~~~~~~~~~~~~~l~~~e~~lY~lI~~rfla~~~~~a~~~~t~v~~~~~~~~f~ 912 (1054)
T 1gku_B 834 VGREW-GESGAHECIRPTRPLTRDDVQRLIQEGVLVVEGLRWEHFALYDLIFRRFMASQCRPFKVVVKKYSIEFDGKTAE 912 (1054)
T ss_dssp CCCCS-CSCCSCCCBCBSSSCCHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHHHTTBCCEEEEEEEEEEEETTEEEE
T ss_pred ccccC-CCCCCCCCCCCCCCCChHHHhhhhhcccccccCCCHHHHHHHHHHHHHHHHHhCcceEEEEEEEEEEeCCEEEE
Confidence 22221 23579999999986331 13799999999999999999999999999999999999999999
Q ss_pred EE-EEEEEecCeeeeecccccCCccCCccCCCCeeeeeeeEeecCccCCC-CCCCHHHHHHHHHhCCCCCccchHHHHHh
Q 046997 451 TS-GRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPP-PLLSEADLLSCMDKAGIGTDATMHDHIKK 528 (807)
Q Consensus 451 a~-g~~i~~~Gw~~v~~~~~~~~~~lP~l~~G~~~~~~~~~i~e~~T~PP-~~~Tea~Li~~Me~~GIGTpATra~iI~~ 528 (807)
++ |++++++||+.||+++ .+|.|.+|+ +.+ . .+++|+|| +||||++||++||+.|||||||||+||++
T Consensus 913 ~~~~~~~~~~G~~~v~~~~-----~~~~l~~g~-~~~---~-~~~~t~pp~~~~tea~Li~~Me~~GIGtpaT~a~iI~~ 982 (1054)
T 1gku_B 913 EERIVRAEGRAYELYRAVW-----VKNELPTGT-FRV---K-AEVKSVPKVLPFTQSEIIQMMKERGIGRPSTYATIVDR 982 (1054)
T ss_dssp ECCEEEEESHHHHHSCCSC-----CCCCCCCEE-EEE---E-BCCEEEESSCCBCHHHHHHHHHHHTCCCTTTHHHHHHH
T ss_pred EEeeEEEEeCCceEEeccc-----cCCCCCCCc-eEE---e-eeeeeCCCCCCCCHHHHHHhhhcCCCCCcccHHHHHHH
Confidence 99 5789999999999753 368899995 443 2 68999998 79999999999999999999999999999
Q ss_pred hcccceEEEcCCceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 046997 529 LLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598 (807)
Q Consensus 529 L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~ 598 (807)
|++||||..++++ |+||++|+.|++.|....+.|++|+|||.||+.|++|++|+.++++||++++++++
T Consensus 983 l~~r~Yv~~~~~~-l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~l~~I~~G~~~~~~~l~~~~~~~~ 1051 (1054)
T 1gku_B 983 LFMRNYVVEKYGR-MIPTKLGIDVFRFLVRRYAKFVSEDRTRDLESRMDAIERGELDYLKALEDMYAEIK 1051 (1054)
T ss_dssp HHHTTSEEEETTE-EEECHHHHHHHHHHHHSCCGGGSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHhCCchhhcCCE-EeEchHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 9999999977665 99999999999999866568999999999999999999999999999999988764
No 6
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=95.33 E-value=0.016 Score=42.57 Aligned_cols=26 Identities=35% Similarity=0.838 Sum_probs=21.3
Q ss_pred CcccccccccccCCCccCCCCCCCCC
Q 046997 755 SNHRQRACIYCQQMGHSSSDCPSQFS 780 (807)
Q Consensus 755 ~~~~~~~c~~c~~~g~~~~~~~~~~~ 780 (807)
.......|..|++.|||..+||..-.
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCCCCCeeeECCCCCcchhhCcCCcc
Confidence 34456789999999999999999444
No 7
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=94.11 E-value=0.057 Score=42.62 Aligned_cols=27 Identities=33% Similarity=0.826 Sum_probs=22.1
Q ss_pred CCcccccccccccCCCccCCCCCCCCC
Q 046997 754 QSNHRQRACIYCQQMGHSSSDCPSQFS 780 (807)
Q Consensus 754 ~~~~~~~~c~~c~~~g~~~~~~~~~~~ 780 (807)
+.......|..|++.|||..+||..-.
T Consensus 18 ~~~~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 18 RSQLDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp STTCCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCCCCcceeCCCCCcccccCcCCcc
Confidence 345567889999999999999999443
No 8
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=93.77 E-value=0.083 Score=48.31 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhhcC----CCCeEEEEEecccCHHHHHHHHHcCCC
Q 046997 105 KKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVN----CHLVLRRARFSALIDREIHQAVQNLVD 170 (807)
Q Consensus 105 ~~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~~~----~~~~v~R~~~s~lt~~~I~~A~~nl~~ 170 (807)
+..|+++.+ -..||+.||||+-||.|-..|.+++.... ++.. +=+..+++++|++||.+...
T Consensus 41 l~~I~~~~~-~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~~---~gVE~a~~~~I~~aL~~~~~ 106 (119)
T 2fcj_A 41 LEELADELE-GYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAY---REVAAAPIWHLAQVLLRARF 106 (119)
T ss_dssp HHHHHHHTT-TSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTTT---CSTTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-CCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCCc---cCcccCCHHHHHHHHHhccc
Confidence 355666654 46899999999999999999999875421 1111 15568899999999998764
No 9
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=93.17 E-value=0.039 Score=36.46 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=17.6
Q ss_pred ccccccccCCCccCCCCCCC
Q 046997 759 QRACIYCQQMGHSSSDCPSQ 778 (807)
Q Consensus 759 ~~~c~~c~~~g~~~~~~~~~ 778 (807)
...|..|++.||++.+||..
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC
T ss_pred CCeeEeCCCCCcccccCCCc
Confidence 35699999999999999974
No 10
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=92.60 E-value=0.037 Score=55.76 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=43.7
Q ss_pred hhcCeEEEeecCChhhhHHHHHHHHHhhhcCCCCeEEEEE--------ecccCHHHHHHHHHcCCC
Q 046997 113 RRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRAR--------FSALIDREIHQAVQNLVD 170 (807)
Q Consensus 113 ~~~d~IiiAtD~DREGE~I~~ei~~~~~~~~~~~~v~R~~--------~s~lt~~~I~~A~~nl~~ 170 (807)
...++||+||+|+-|||..++.|.+.++..+ .+|.|+= +.=+++-.+.+||.+-++
T Consensus 132 ~~V~EVIlAtnpTvEGEaTA~YI~~~Lk~~~--vkVTRiA~GiPvGgeLEY~De~TL~~Al~~R~~ 195 (228)
T 1vdd_A 132 GQGMEVILATGTTVEGDATALYLQRLLEPLG--AAISRIAYGVPVGGSLEYTDEVTLGRALTGRQT 195 (228)
T ss_dssp CTTCEEEECCCSSHHHHHHHHHHHHHHTTSS--CEEEECCBCBCTTCCGGGSCHHHHHHHHHTCEE
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHHHHHcC--CCEEEecccCCCCcceeeccHHHHHHHHHcCcc
Confidence 5679999999999999999999999997654 4688873 334566677777776543
No 11
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=91.74 E-value=0.37 Score=43.66 Aligned_cols=82 Identities=17% Similarity=0.329 Sum_probs=44.2
Q ss_pred ccccCCCCCcceEEEecC-CCCceeeccCCCCCCcceecCCC-----------c------------cccccccCccCCCC
Q 046997 635 VRQCGICQESNMVLKKSR-DGNLMVGCLAFPQCRNAVWLPGS-----------V------------SEAAVTTNTCNSCT 690 (807)
Q Consensus 635 ~~~CP~C~g~~lv~r~~k-~G~~f~gCs~yP~C~~~~~~p~~-----------~------------~~~~~t~~~CP~Cg 690 (807)
...||.| ++.|..+..+ .+...|.|.+ |.+....... . .....+...||+||
T Consensus 4 m~FCp~C-gn~L~~~~~~~~~~~~~~C~~---C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~ 79 (113)
T 3h0g_I 4 FQYCIEC-NNMLYPREDKVDRVLRLACRN---CDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCH 79 (113)
T ss_dssp CCCCSSS-CCCCEECCCTTTCCCCEECSS---SCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSC
T ss_pred ceeCcCC-CCEeeEcccCCCCeeEEECCC---CCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCC
Confidence 3569999 6777776543 2343478965 6654432210 0 00112357799999
Q ss_pred CCceEEEEeeccCccCCCCCccCccccCCCCChh
Q 046997 691 PGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724 (807)
Q Consensus 691 ~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~~~ 724 (807)
....+-.+...|...-+ -..++.|. .|...
T Consensus 80 ~~~a~~~q~q~rsade~---mt~fy~C~-~C~~~ 109 (113)
T 3h0g_I 80 QHEAVFYQTHSRRGDTM---MTLIYVCV-HCGFA 109 (113)
T ss_dssp CSCEEEECCCCSSCCCC---CCCEEEES-SSCCC
T ss_pred CceEEEEEEecccCCCC---CeeEEEcC-CCCCE
Confidence 75555444443432211 11346788 78643
No 12
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=91.13 E-value=0.35 Score=41.99 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=43.6
Q ss_pred CCCHHHHHHHH-HhCCCCCccchHHHHHhhcccceEEEc---CCceeeechhHHHHHhhc
Q 046997 501 LLSEADLLSCM-DKAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGY 556 (807)
Q Consensus 501 ~~Tea~Li~~M-e~~GIGTpATra~iI~~L~~R~Yv~~~---~~~~l~pT~~G~~li~~l 556 (807)
..|..+|.+.| +..|| +++|-..+|+.|.++|||++. ..+.+.+|+.|+.+++.+
T Consensus 22 ~~~~~el~~~la~~l~i-s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~ 80 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPM-STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISL 80 (99)
T ss_dssp TCBHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHH
Confidence 36778887776 56677 788999999999999999863 234589999999988544
No 13
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.98 E-value=0.089 Score=41.34 Aligned_cols=22 Identities=27% Similarity=0.756 Sum_probs=18.6
Q ss_pred cccccccccccCCCccCCCCCC
Q 046997 756 NHRQRACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 756 ~~~~~~c~~c~~~g~~~~~~~~ 777 (807)
.+....|..||++|||..+||.
T Consensus 4 ~p~~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 4 GSSGYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SSSSCCCTTTCCTTSCGGGCSG
T ss_pred CCCCCccccCCCcCcccccCCC
Confidence 3455679999999999999995
No 14
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=89.76 E-value=0.13 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=17.2
Q ss_pred ccccccccCCCccCCCCCC
Q 046997 759 QRACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 759 ~~~c~~c~~~g~~~~~~~~ 777 (807)
...|..|+..||+..+||.
T Consensus 6 ~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCS
T ss_pred CCEEEECCccccCHhHCcc
Confidence 4569999999999999986
No 15
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=89.24 E-value=0.66 Score=42.54 Aligned_cols=82 Identities=16% Similarity=0.430 Sum_probs=45.0
Q ss_pred ccccCCCCCcceEEEecCC-CCceeeccCCCCCCcceecCCC----------c-------------cccccccCccCCCC
Q 046997 635 VRQCGICQESNMVLKKSRD-GNLMVGCLAFPQCRNAVWLPGS----------V-------------SEAAVTTNTCNSCT 690 (807)
Q Consensus 635 ~~~CP~C~g~~lv~r~~k~-G~~f~gCs~yP~C~~~~~~p~~----------~-------------~~~~~t~~~CP~Cg 690 (807)
...||.| +..|..+..+. +...|.|.. |.+....... . .....+...||+||
T Consensus 4 ~~FCp~C-gnlL~~~~~~~~~~~~~~C~~---C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~ 79 (122)
T 1twf_I 4 FRFCRDC-NNMLYPREDKENNRLLFECRT---CSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCH 79 (122)
T ss_dssp CCBCSSS-CCBCEEEEETTTTEEEEECSS---SSCEEECSCSEEEEEESSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTC
T ss_pred CCccccc-CccCcccccCcCCCCEEECCc---CCCeeecCccEEEEEeecccccccccccccccccccccccCCCCCCCC
Confidence 3579999 67777665422 233588964 7665442210 0 00112457799999
Q ss_pred CCceEEEEeeccCccCCCCCccCccccCCCCChh
Q 046997 691 PGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724 (807)
Q Consensus 691 ~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~~~ 724 (807)
....+-.+...|...-+ + ..++.|. .|...
T Consensus 80 ~~~a~~~q~q~rsade~--~-t~fy~C~-~C~~~ 109 (122)
T 1twf_I 80 SRENVFFQSQQRRKDTS--M-VLFFVCL-SCSHI 109 (122)
T ss_dssp CCCEEEEECSSCCTTCC--C-CEEEEET-TTCCE
T ss_pred CCEEEEEEecCccCCCC--c-eEEEEeC-CCCCE
Confidence 76555544444433221 1 2346798 78654
No 16
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=88.62 E-value=0.43 Score=43.52 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhhcC
Q 046997 106 KTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVN 143 (807)
Q Consensus 106 ~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~~~ 143 (807)
+.++.+.+..+.||+.||+|+.||.|...+.+++...+
T Consensus 53 ~~i~~l~~~~~~VIIltD~D~aGe~ir~~i~~~l~~~~ 90 (118)
T 1t6t_1 53 DVVDMLEGKWEKVILLFDLDTHGERINQKMKELLSSQG 90 (118)
T ss_dssp HHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCEEEEEECCChhHHHHHHHHHHhcCccC
Confidence 34555555667799999999999999999999987643
No 17
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=88.54 E-value=0.18 Score=47.09 Aligned_cols=35 Identities=17% Similarity=0.463 Sum_probs=22.6
Q ss_pred cccccCCCCCcceEEEecCC-CCceeeccCCCCCCcceec
Q 046997 634 VVRQCGICQESNMVLKKSRD-GNLMVGCLAFPQCRNAVWL 672 (807)
Q Consensus 634 ~~~~CP~C~g~~lv~r~~k~-G~~f~gCs~yP~C~~~~~~ 672 (807)
....||+| ++.|..+..+. +...|.|.+ |.|....
T Consensus 23 ~~~FCPeC-gNmL~pked~~~~~l~~~Crt---CgY~~~~ 58 (133)
T 3qt1_I 23 TFRFCRDC-NNMLYPREDKENNRLLFECRT---CSYVEEA 58 (133)
T ss_dssp CCCBCTTT-CCBCBCCBCTTTCCBCCBCSS---SCCBCCC
T ss_pred CCeeCCCC-CCEeeECccCCCceeEEECCC---CCCcEEc
Confidence 45689999 67777665432 344588965 7665443
No 18
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=88.05 E-value=0.3 Score=38.87 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=22.7
Q ss_pred cccccccccCCCccCCCCCCCCCCCccc
Q 046997 758 RQRACIYCQQMGHSSSDCPSQFSGSRNA 785 (807)
Q Consensus 758 ~~~~c~~c~~~g~~~~~~~~~~~~~~~~ 785 (807)
..+.|..|++.||+..+||+..+.+++.
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~~~~G~~ 56 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKTDNQGNP 56 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTTSSSSCC
T ss_pred CCcceeECCCCCCccCcCCCccccCCCc
Confidence 3467999999999999999976655543
No 19
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=84.29 E-value=0.49 Score=34.19 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=15.4
Q ss_pred cccccccCCCccCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~ 777 (807)
..|..|++.||+..+||.
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 469999999999999984
No 20
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=83.53 E-value=0.43 Score=34.05 Aligned_cols=18 Identities=44% Similarity=0.968 Sum_probs=14.9
Q ss_pred cccccccCCCccCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~ 777 (807)
..|..|++.||+..+||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 358999999999988884
No 21
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=83.53 E-value=1.4 Score=40.60 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||++... ..+.+|+.|+.+++.+
T Consensus 46 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 102 (145)
T 3g3z_A 46 RTQKHIGEKW---SL-PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPL 102 (145)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHH
Confidence 5666666655 44 67889999999999999987321 2489999999987543
No 22
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=83.52 E-value=3.1 Score=38.97 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhccccCccccCchhhHHHHHH
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESD 575 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~ 575 (807)
.|.++|-..| || +++|...+|+.|.++|||++.. ...+.+|++|+.+++.+ ...++..
T Consensus 47 ~~~~eLa~~l---~~-~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~------------~~~~~~~ 110 (151)
T 4aik_A 47 QSQIQLAKAI---GI-EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV------------DGVISST 110 (151)
T ss_dssp SCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH------------HHHHHHH
T ss_pred CcHHHHHHHH---Cc-CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH------------HHHHHHH
Confidence 4556666555 44 6889999999999999998632 12489999999988543 3344444
Q ss_pred HHHHHcCCCChHH
Q 046997 576 MKEVSVGNKSKAD 588 (807)
Q Consensus 576 L~~I~~G~~~~~~ 588 (807)
.+.+..| ++.++
T Consensus 111 ~~~~~~~-l~~ee 122 (151)
T 4aik_A 111 RKEILGG-ISSDE 122 (151)
T ss_dssp HHHHTTT-SCHHH
T ss_pred HHHHHhC-CCHHH
Confidence 5555444 55544
No 23
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.49 E-value=3.2 Score=38.00 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|..+|-..| || +++|-..+|+.|.++|||.+.. ...+.+|+.|+.++..+
T Consensus 51 ~~~~~la~~l---~i-~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (147)
T 2hr3_A 51 VTPSELAAAE---RM-RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGN 107 (147)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHH
Confidence 5666666654 66 7788999999999999998742 12388999999987543
No 24
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=83.47 E-value=0.77 Score=40.07 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhcc
Q 046997 511 MDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557 (807)
Q Consensus 511 Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~ 557 (807)
++..|+ ++++-..+++.|.+.|||++..+ .+..|++|..+++.+.
T Consensus 27 a~~~~l-s~~~~~~~l~~L~~~GLI~~~~~-~~~LT~kG~~~l~~l~ 71 (95)
T 1r7j_A 27 MYGANL-SYALTGRYIKMLMDLEIIRQEGK-QYMLTKKGEELLEDIR 71 (95)
T ss_dssp HHHHTC-CHHHHHHHHHHHHHTTSEEEETT-EEEECHHHHHHHHHHH
T ss_pred HHHhCc-CHHHHHHHHHHHHHCCCeEEECC-eeEEChhHHHHHHHHH
Confidence 334444 35566778999999999998765 4899999999887665
No 25
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=83.39 E-value=0.57 Score=35.68 Aligned_cols=18 Identities=33% Similarity=0.807 Sum_probs=11.2
Q ss_pred cccccccCCCccCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~ 777 (807)
..|..|++.||++.+||.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 446666666666666665
No 26
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.31 E-value=1 Score=36.15 Aligned_cols=21 Identities=29% Similarity=0.876 Sum_probs=18.1
Q ss_pred ccccccccCCCccCCCCCCCC
Q 046997 759 QRACIYCQQMGHSSSDCPSQF 779 (807)
Q Consensus 759 ~~~c~~c~~~g~~~~~~~~~~ 779 (807)
...|..|++.||+..+||...
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG
T ss_pred CCccCCcCCcCCccCcCCCcc
Confidence 356999999999999999853
No 27
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=82.91 E-value=3.5 Score=38.08 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC--------CceeeechhHHHHHhhccccCccccCchhhHHHH
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA--------NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMME 573 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~--------~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E 573 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||.+.+ ...+.+|+.|+.++..+ ...++
T Consensus 52 ~t~~eLa~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~------------~~~~~ 115 (151)
T 3kp7_A 52 LTVGQITEKQ---GV-NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKER------------KAIMS 115 (151)
T ss_dssp BCHHHHHHHH---CS-CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHH------------HHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHH------------HHHHH
Confidence 5666666665 44 6788999999999999998621 12489999999987533 33455
Q ss_pred HHHHHHHcCCCChHH
Q 046997 574 SDMKEVSVGNKSKAD 588 (807)
Q Consensus 574 ~~L~~I~~G~~~~~~ 588 (807)
..++.+..+ .+.++
T Consensus 116 ~~~~~~~~~-l~~~e 129 (151)
T 3kp7_A 116 HIASDMTSD-FDSKE 129 (151)
T ss_dssp HHHHHTTTT-SCHHH
T ss_pred HHHHHHHhc-CCHHH
Confidence 555555555 55444
No 28
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=82.33 E-value=3.1 Score=38.79 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~ 555 (807)
.|.++|-+.| || +++|-..+|+.|.++|||.+... ..+.+|+.|+.+++.
T Consensus 63 ~~~~ela~~l---~i-~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 118 (160)
T 3boq_A 63 LSMGKLSGAL---KV-TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQ 118 (160)
T ss_dssp EEHHHHHHHC---SS-CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHH
Confidence 4556665554 66 78899999999999999987421 237899999998754
No 29
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=81.77 E-value=2.7 Score=38.67 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| || +++|-..+|..|.+.|||.+..+..+.+|+.|+.++..+
T Consensus 23 ~~~~ela~~l---~v-s~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~ 73 (142)
T 1on2_A 23 ARVSDIAEAL---AV-HPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRL 73 (142)
T ss_dssp CCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHH
Confidence 4555554444 56 578888999999999999887656789999999987543
No 30
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=81.65 E-value=1.3 Score=47.18 Aligned_cols=46 Identities=17% Similarity=0.458 Sum_probs=30.1
Q ss_pred cccccCCCCCcce--EEEe-c-CCCCceeeccCCCCCCcceecCCCccccccccCccCCCCC
Q 046997 634 VVRQCGICQESNM--VLKK-S-RDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTP 691 (807)
Q Consensus 634 ~~~~CP~C~g~~l--v~r~-~-k~G~~f~gCs~yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~ 691 (807)
..+.||.||+..+ +++. + ..|..++.|+- |.+.....+ ..||.||.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~---C~t~W~~~R---------~~C~~Cg~ 230 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSL---CACEWHYVR---------IKCSHCEE 230 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETT---TCCEEECCT---------TSCSSSCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCC---CCCEEeecC---------cCCcCCCC
Confidence 4578999965443 2332 3 46767899975 987766543 46999996
No 31
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=81.23 E-value=2 Score=39.24 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC---C---ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA---N---TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~---~---~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||.+.. + ..+.+|+.|+.++..+
T Consensus 48 ~~~~~la~~l---~~-s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 48 KRPGELSVLL---GV-AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 5666666665 45 6888999999999999998742 1 2478999999987543
No 32
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=81.07 E-value=1.9 Score=43.01 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=39.7
Q ss_pred hcCeEEEeecCChhhhHHHHHHHHHhhhcCCCCeEEEEE--------ecccCHHHHHHHHHcC
Q 046997 114 RCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRAR--------FSALIDREIHQAVQNL 168 (807)
Q Consensus 114 ~~d~IiiAtD~DREGE~I~~ei~~~~~~~~~~~~v~R~~--------~s~lt~~~I~~A~~nl 168 (807)
..++||+||+|.-|||.-+..|.+.++..+ .+|.|+= +.=+++-.+.+||.+-
T Consensus 149 ~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~~--vkvTRiA~GiPvGgeLEY~D~~TL~~Al~~R 209 (212)
T 3vdp_A 149 SVKEVILATNPDIEGEATAMYIAKLLKPFG--VKVTRIAHGIPVGGDLEYTDVVTLSKALEGR 209 (212)
T ss_dssp CCSEEEECCCSSHHHHHHHHHHHHHHTTTT--CEEEECCBSBCTTCCGGGSCHHHHHHHHHTC
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHhhhcC--CCeeeccccCcCCcchhhccHHHHHHHHHhC
Confidence 468999999999999999999999998654 4677763 2234555666666553
No 33
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=80.66 E-value=1.1 Score=37.37 Aligned_cols=22 Identities=18% Similarity=0.625 Sum_probs=13.6
Q ss_pred cccccccccccCCCccCCCCCC
Q 046997 756 NHRQRACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 756 ~~~~~~c~~c~~~g~~~~~~~~ 777 (807)
+.+...|..|++.||+..+||.
T Consensus 21 ~~r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 21 RSKGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp CSTTSCCTTTCCSSSCTTTCSS
T ss_pred cCCCCcccccCCcCcCcccCCC
Confidence 3444556666666666666664
No 34
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=80.61 E-value=2.3 Score=49.36 Aligned_cols=112 Identities=10% Similarity=0.131 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHcccccceEEEEEEeecCCceEEEEec----cC--CcC--CHH-HHHHHHHHhccCCCeEEEEEEeee
Q 046997 226 TLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWM----RG--HLF--DYT-SAVIIYEMCVQEPTATVTKVRQQE 296 (807)
Q Consensus 226 tL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~----~~--r~~--d~~-~a~~~~~~~~~~~~~~V~~v~~k~ 296 (807)
+-.||+.|..+.. ..|-.|-+..+.+..++..|.++-. .| .++ +.. ..+..+-.+..+....+.+++.++
T Consensus 390 lY~LI~rrflA~~-~~~a~~~~t~v~~~~~~~~F~a~g~~i~~~Gw~~vy~~~~~~~~~~~LP~l~~G~~~~~~~~~~~~ 468 (592)
T 1mw9_X 390 LYQLIWRQFVACQ-MTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQ 468 (592)
T ss_dssp HHHHHHHHHHHHT-SCCEEEEEEEEEEEETTEEEEEEEEEEEECGGGGGSCCC----CCCCCCCCCTTCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHh-CchhEEEEEEEEEEECCEEEEEEEEEEeeCChHHhcCccccccccccccccCCCCEeEeeEeEEee
Confidence 4479999988753 3444566667777666666665321 11 122 111 000111122334456778888899
Q ss_pred eeeCCCCCCCHHHHHHHHHHhcCCCHHHHH-HHHHHHhhcCcee
Q 046997 297 KLKYPPYPLSTIELEKRASRYFRMSSEHTM-KVAEDLYQAGFIS 339 (807)
Q Consensus 297 ~~~~pP~pf~l~~Lq~~ask~~g~s~~~tl-~iaQ~LYE~g~IS 339 (807)
+.+.||.+|+-++|.+.|-+ .|+.-.-|. .|.+.|.++|||.
T Consensus 469 ~~T~PP~ryTEasLi~~Me~-~GIGtpATrA~iI~~L~~R~Yv~ 511 (592)
T 1mw9_X 469 HFTKPPARFSEASLVKELEK-RGIGRPSTYASIISTIQDRGYVR 511 (592)
T ss_dssp EECCCCCCCCHHHHHHHHHH-TTCCCTTTHHHHHHHHHHTTSEE
T ss_pred eeccCCCCCCHHHHHHHHHh-cCCCchhhHHHHHHHHHhcCcee
Confidence 99999999999999999876 688655555 4899999999997
No 35
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.50 E-value=0.89 Score=36.56 Aligned_cols=21 Identities=19% Similarity=0.604 Sum_probs=18.3
Q ss_pred ccccccccccCCCccCCCCCC
Q 046997 757 HRQRACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 757 ~~~~~c~~c~~~g~~~~~~~~ 777 (807)
.+...|..|+++||+..+||.
T Consensus 5 ~r~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 5 SSGDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CSCCCCSSSCCSSSCTTTCCS
T ss_pred CCCCcccccCCCCcChhhCCC
Confidence 445679999999999999996
No 36
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=80.37 E-value=2.6 Score=42.54 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=49.4
Q ss_pred CCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHHcCCCChHHHH
Q 046997 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL 590 (807)
Q Consensus 515 GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~G~~~~~~~l 590 (807)
|+ +++|-..+|+.|.++|||.+...+.+.+|++|+.++..+. .....||..|..+. | ++++++-
T Consensus 35 ~v-s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~---------~~~~~~e~~l~~~l-g-l~~ee~~ 98 (226)
T 2qq9_A 35 EQ-SGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVM---------RKHRLAERLLTDII-G-LDINKVH 98 (226)
T ss_dssp TC-CHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHHH---------HHHHHHHHHHHHTT-C-CCHHHHH
T ss_pred CC-CHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHHH---------HHHHHHHHHHHHHc-C-CCHHHHH
Confidence 45 6889999999999999999877667999999999876443 23457888887654 3 7776654
No 37
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=80.15 E-value=8.7 Score=34.86 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~ 555 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.
T Consensus 51 ~~~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 51 KTMAYLANRY---FV-TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 5667766654 55 6788999999999999998642 1238899999998753
No 38
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=79.72 E-value=6.1 Score=35.52 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC---C---ceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA---N---TRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~---~---~~l~pT~~G~~li~~ 555 (807)
.|.++|-+.| |+ +++|-..+|+.|.++|||.+.. + ..+.+|+.|..++..
T Consensus 44 ~~~~ela~~l---~~-s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~ 99 (138)
T 3bpv_A 44 IKQDELATFF---HV-DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPL 99 (138)
T ss_dssp CBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHH
Confidence 5667776666 45 6888999999999999998731 1 237899999997753
No 39
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=79.65 E-value=0.68 Score=35.25 Aligned_cols=19 Identities=32% Similarity=0.940 Sum_probs=16.9
Q ss_pred cccccccCCCccCCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPSQ 778 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~~ 778 (807)
..|..|++.||+..+||+.
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 3599999999999999973
No 40
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=79.53 E-value=2.5 Score=38.68 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=38.2
Q ss_pred CHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 503 SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 503 Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
|.++|-..| |+ +++|-..+|+.|.++|||.+... ..+.+|+.|+.++..+
T Consensus 52 ~~~~la~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (144)
T 3f3x_A 52 SMVYLANRY---FV-TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEA 107 (144)
T ss_dssp EHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHH
Confidence 666766665 44 67889999999999999987421 1389999999987533
No 41
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=79.39 E-value=4.8 Score=37.55 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||++.. ...+.+|+.|+.+++.+
T Consensus 65 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 65 INQESLSDYL---KI-DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHH
Confidence 4566666665 44 6789999999999999998742 12489999999987543
No 42
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=79.26 E-value=5.7 Score=37.57 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| || +++|-..+|+.|.++|||++... ..+.+|+.|+.+++.+
T Consensus 69 ~t~~eLa~~l---~i-~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 125 (166)
T 3deu_A 69 QSQIQLAKAI---GI-EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM 125 (166)
T ss_dssp EEHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHH
Confidence 5566776666 44 78899999999999999987531 2488999999988543
No 43
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=78.98 E-value=1.7 Score=37.31 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHhCCCCCccc-hHHHHHhhcccceEEEc----CCceeeechhHHHHHhhcc
Q 046997 501 LLSEADLLSCMDKAGIGTDAT-MHDHIKKLLDRFYAIKD----ANTRFAPTNIGEALVMGYD 557 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpAT-ra~iI~~L~~R~Yv~~~----~~~~l~pT~~G~~li~~l~ 557 (807)
..|.++|-+.| || +++| -..+|+.|.++|||..+ ....+.+|++|+.+++.+.
T Consensus 30 ~~t~~eLa~~l---~i-s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~ 87 (95)
T 2pg4_A 30 EPSLAEIVKAS---GV-SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLE 87 (95)
T ss_dssp CCCHHHHHHHH---CC-CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---CC-CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHH
Confidence 35777776666 56 5667 99999999999999843 1234899999999886543
No 44
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.60 E-value=9.9 Score=34.38 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhh
Q 046997 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMG 555 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~ 555 (807)
..|.++|-..| |+ +++|-..+|+.|.++|||.+... ..+.+|+.|+.++..
T Consensus 52 ~~t~~~la~~l---~~-s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (146)
T 2fbh_A 52 SPTQRELAQSV---GV-EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIAD 108 (146)
T ss_dssp CCBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHH
T ss_pred CCCHHHHHHHh---CC-ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHH
Confidence 35677777666 55 67889999999999999987431 238899999998753
No 45
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=78.56 E-value=1.4 Score=51.76 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHcccccceEEEEEEeec--CCceEEEEec----cC--CcCCHHHHHHHHHHhccCCCeEEEEEEeeee
Q 046997 226 TLGFVVERYWEIQAHESEEFWTINCSHKS--EEGTATFSWM----RG--HLFDYTSAVIIYEMCVQEPTATVTKVRQQEK 297 (807)
Q Consensus 226 tL~lIv~Re~eI~~F~p~~y~~i~~~~~~--~~~~~~~~~~----~~--r~~d~~~a~~~~~~~~~~~~~~V~~v~~k~~ 297 (807)
+-.||+.|..+.. ..|-.|-+..+.+.. ++..|.++-. .| .+++.+. +..+-.+..+..+.+.+++.+++
T Consensus 360 lY~LI~rrflA~~-~~~a~~~~t~v~~~~~~~~~~F~a~g~~i~~~G~~~vy~~~~-~~~LP~l~~G~~~~~~~~~~~~~ 437 (633)
T 2gai_A 360 LYELIWKRFLASQ-MKPSQYEETRFVLRTKDGKYRFKGTVLKKIFDGYEKVWKTER-NTGEFPFEEGESVKPVVVKIEEQ 437 (633)
T ss_dssp HHHHHHHHHHHHT-BCCEEEEEEEEEEECTTSSCEEEEEEEEEEECGGGGTSCCCC-CBCCCCCCTTCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHh-CchheEEEEEEEEEEeCCCcEEEEEEEEEecCCHHHhhcccc-cccCCCcCCCCEEEEeEEEEeee
Confidence 4479999988853 345556667777776 5666665421 11 2232110 00111222233456778888899
Q ss_pred eeCCCCCCCHHHHHHHHHHhcCCCHHHHH-HHHHHHhhcCceec
Q 046997 298 LKYPPYPLSTIELEKRASRYFRMSSEHTM-KVAEDLYQAGFISY 340 (807)
Q Consensus 298 ~~~pP~pf~l~~Lq~~ask~~g~s~~~tl-~iaQ~LYE~g~ISY 340 (807)
.+.||.+|+-++|.+.|-+ .|+.-.-|. .|.+.|.++|||.-
T Consensus 438 ~T~PP~ryTEasLi~~Me~-~GIGtpaT~A~iI~~L~~R~Yv~~ 480 (633)
T 2gai_A 438 ETKPKPRYTEGSLVKEMER-LGIGRPSTYASTIKLLLNRGYIKK 480 (633)
T ss_dssp ECCCCCCCCHHHHHHHHHH-HTCCCTTTHHHHHHHHHHTTSEEE
T ss_pred ecCCCCCCCHHHHHHHhhc-cCCCCcccHHHHHHHHhhcCcEEE
Confidence 9999999999999999976 688655554 58999999999984
No 46
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=78.28 E-value=0.9 Score=32.75 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=16.4
Q ss_pred ccccccCCCccCCCCCCC
Q 046997 761 ACIYCQQMGHSSSDCPSQ 778 (807)
Q Consensus 761 ~c~~c~~~g~~~~~~~~~ 778 (807)
.|..|++.||++.+||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999973
No 47
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=77.26 E-value=1 Score=32.03 Aligned_cols=17 Identities=41% Similarity=0.923 Sum_probs=16.0
Q ss_pred ccccccCCCccCCCCCC
Q 046997 761 ACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 761 ~c~~c~~~g~~~~~~~~ 777 (807)
.|..|+++||+..+||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 59999999999999997
No 48
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=77.13 E-value=8.9 Score=35.09 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~ 555 (807)
.|.++|-..| || +++|-..+|+.|.++|||.+... ..+.+|+.|+.++..
T Consensus 55 ~t~~ela~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 55 ATAPQLGAAL---QM-KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 4556666555 45 67889999999999999987421 248899999998753
No 49
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=76.53 E-value=4.7 Score=36.95 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
..|.++|-..| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 54 ~~t~~ela~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~ 111 (148)
T 3nrv_A 54 DCSVQKISDIL---GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
T ss_dssp SBCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHH
T ss_pred CCCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHH
Confidence 34556665555 45 6788999999999999998642 23489999999988543
No 50
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=76.39 E-value=4.8 Score=36.67 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~ 555 (807)
.|.++|-..| || +++|-..+|+.|.++|||++... ..+.+|++|+.+++.
T Consensus 52 ~t~~eLa~~l---~~-~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 52 LNLQDLGRQM---CR-DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLH 107 (142)
T ss_dssp CCHHHHHHHH---C----CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHH
T ss_pred cCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHH
Confidence 5777776666 55 67889999999999999986421 237899999998753
No 51
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=76.24 E-value=0.87 Score=35.43 Aligned_cols=19 Identities=26% Similarity=0.782 Sum_probs=11.8
Q ss_pred ccccccccCCCccCCCCCC
Q 046997 759 QRACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 759 ~~~c~~c~~~g~~~~~~~~ 777 (807)
...|..|++.||++.+||.
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSS
T ss_pred CcceeeeCCCCcChhhcCC
Confidence 3456666666666666665
No 52
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=75.74 E-value=2.8 Score=38.93 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| || +++|-..+|+.|.++|||++... ..+.+|+.|+.+++.+
T Consensus 58 ~t~~ela~~l---~i-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 114 (155)
T 3cdh_A 58 MMITRLAKLS---LM-EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESL 114 (155)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHH
Confidence 5666666554 56 67889999999999999987421 2488999999988644
No 53
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=75.48 E-value=8.1 Score=34.81 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhh
Q 046997 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMG 555 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~ 555 (807)
..|..+|-..| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.
T Consensus 50 ~~~~~ela~~l---~~-~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~ 106 (141)
T 3bro_A 50 EVLQRDLESEF---SI-KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETI 106 (141)
T ss_dssp CCBHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHH
T ss_pred CcCHHHHHHHH---CC-CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHH
Confidence 46777777666 45 6889999999999999998742 1247899999987753
No 54
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=75.29 E-value=2.4 Score=39.31 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEE--c----CC--ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--D----AN--TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~--~----~~--~~l~pT~~G~~li~~l 556 (807)
.|.++|-+.| |+ +++|-..+|+.|.++|||.+ . .+ ..+.+|+.|+.+++.+
T Consensus 56 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~ 114 (154)
T 2qww_A 56 ISVADLTKRL---II-TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRS 114 (154)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHH
Confidence 5666766666 45 78999999999999999998 2 11 2489999999988654
No 55
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=75.25 E-value=2.1 Score=41.74 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 500 ~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
...|.++|-..| |+ +++|-..+|..|.++|||++... ..+.+|+.|+.++..+
T Consensus 56 ~~~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 114 (189)
T 3nqo_A 56 EETTLNNIARKM---GT-SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTC 114 (189)
T ss_dssp GGCCHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCcCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 345667776665 55 67889999999999999987321 3489999999988543
No 56
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=75.05 E-value=4.3 Score=40.57 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHH
Q 046997 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVS 580 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~ 580 (807)
..|..+|-+.|. + +++|-..+|+.|.++|||.....+.+.+|++|+.+...+. .....||..|.++.
T Consensus 20 ~~~~~~lA~~l~---v-s~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~---------~~h~~~e~~l~~~l 86 (214)
T 3hrs_A 20 KITNKEIAQLMQ---V-SPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLY---------RKHRLIEVFLVHHL 86 (214)
T ss_dssp CCCHHHHHHHHT---C-CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHH---------HHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHC---C-ChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHH---------HHHHHHHHHHHHHh
Confidence 356667666663 3 5788999999999999999876667899999999876443 23457887776543
Q ss_pred cCCCChHHHHHH
Q 046997 581 VGNKSKADVLAN 592 (807)
Q Consensus 581 ~G~~~~~~~l~~ 592 (807)
| .+++++-+.
T Consensus 87 -g-~~~~e~~~~ 96 (214)
T 3hrs_A 87 -G-YTTEEIHEE 96 (214)
T ss_dssp -C-CCHHHHHHH
T ss_pred -C-CCHHHHHHH
Confidence 2 566655443
No 57
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.50 E-value=8.5 Score=35.57 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|..+|-+.| || +++|-..+|+.|.++|||.+.. ...+.+|+.|+.++..+
T Consensus 59 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 59 KKMKEIAEFL---ST-TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp BCHHHHHHHT---TS-CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH
Confidence 4556665554 55 7789999999999999998742 12478999999987543
No 58
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=74.34 E-value=4.6 Score=40.72 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHHcCCC
Q 046997 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNK 584 (807)
Q Consensus 505 a~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~G~~ 584 (807)
.+|-+.| |+ +++|-..+|+.|.++|||++...+.+.+|++|+.++..+. .....||..|..+.. .
T Consensus 28 ~~La~~l---~v-s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~---------~~~~~~e~~l~~~lg--~ 92 (230)
T 1fx7_A 28 ARIAERL---DQ-SGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVM---------RKHRLAERLLVDVIG--L 92 (230)
T ss_dssp HHHHHHH---TC-CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHH---------HHHHHHHHHHHHTTC--C
T ss_pred HHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHHH---------HHHHHHHHHHHHhcC--C
Confidence 5555544 56 7888999999999999999877667899999999875442 244577777775544 5
Q ss_pred ChHHHHHH
Q 046997 585 SKADVLAN 592 (807)
Q Consensus 585 ~~~~~l~~ 592 (807)
+++++-++
T Consensus 93 ~~~~~~~~ 100 (230)
T 1fx7_A 93 PWEEVHAE 100 (230)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 66655544
No 59
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=74.19 E-value=1.7 Score=51.07 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHcccccceEEEEEEeecCCceEEEEec----cC--CcCCH---HH--HHHHHHHhccCCCeEEEEEE
Q 046997 225 PTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWM----RG--HLFDY---TS--AVIIYEMCVQEPTATVTKVR 293 (807)
Q Consensus 225 PtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~----~~--r~~d~---~~--a~~~~~~~~~~~~~~V~~v~ 293 (807)
-+--||+.|..+.. ..|-.|-+..+.+..++..|.++-. .| .++.. +. ....+-.+..+..+.+.+++
T Consensus 401 klY~LI~rRflA~~-~~~a~~~~t~v~~~~~~~~F~a~G~~i~~~Gw~~vy~~~~~~~~~~~~~LP~l~~Ge~~~~~~~~ 479 (659)
T 1i7d_A 401 KVYNLIARQYLMQF-CPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGE 479 (659)
T ss_dssp HHHHHHHHHHHHTT-SCCEEEEEEEEEECSTTCCEEECEEEEEECGGGGGSCTTGGGTTCEECCCCCCCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHh-CchheEEEEEEEEEECCEEEEEEEEEEecCChhheecccccccccccccCCccCCCCEEEEeEeE
Confidence 34569999988742 2344455666777666666655311 11 22211 00 00011122333456788899
Q ss_pred eeeeeeCCCCCCCHHHHHHHHHH----------------hcCCCHHHH-HHHHHHHhhcCceec
Q 046997 294 QQEKLKYPPYPLSTIELEKRASR----------------YFRMSSEHT-MKVAEDLYQAGFISY 340 (807)
Q Consensus 294 ~k~~~~~pP~pf~l~~Lq~~ask----------------~~g~s~~~t-l~iaQ~LYE~g~ISY 340 (807)
.+++.+.||.+|+-++|.++|-. ..|+.-.-| ..|.+.|+++|||.-
T Consensus 480 ~~e~~T~PP~ryTEasLi~~Me~~~k~v~d~e~~~~lk~~~GIGtpATrA~iIe~L~~R~Yv~~ 543 (659)
T 1i7d_A 480 VVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTK 543 (659)
T ss_dssp EEEEECCCCCCEEHHHHHHHHHTGGGGCCCHHHHHHHHHTTSSSCTTTHHHHHHHHHHTTSEEE
T ss_pred EeeeecCCCCCCCHHHHHHHHHHhccccCCHHHHHHHhhccCCCccccHHHHHHHHHhCCcEee
Confidence 99999999999999999999985 358854444 458999999999973
No 60
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=73.92 E-value=8.6 Score=34.80 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||.+... ..+.+|+.|..++..+
T Consensus 52 ~~~~ela~~l---~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 52 VNVKKVVTEL---AL-DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp EEHHHHHHHT---TC-CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHH
Confidence 4555655554 66 68889999999999999987431 2478999999987543
No 61
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=73.92 E-value=1.1 Score=34.75 Aligned_cols=18 Identities=33% Similarity=0.903 Sum_probs=16.6
Q ss_pred cccccccCCCccCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~ 777 (807)
..|..|++.||+..+||.
T Consensus 34 ~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred CEeCCCCCcCCccCCCcC
Confidence 459999999999999997
No 62
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=73.91 E-value=8 Score=34.65 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHhCCC-C---Cc-cchHHHHHhhcccceEEEcC-------CceeeechhHHHHHh
Q 046997 502 LSEADLLSCMDKAGI-G---TD-ATMHDHIKKLLDRFYAIKDA-------NTRFAPTNIGEALVM 554 (807)
Q Consensus 502 ~Tea~Li~~Me~~GI-G---Tp-ATra~iI~~L~~R~Yv~~~~-------~~~l~pT~~G~~li~ 554 (807)
.+-.+|.+.++..|. + ++ +|-..++..|.+.|||+... .+.+.+|+.|+.++.
T Consensus 27 ~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~ 91 (118)
T 2esh_A 27 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLR 91 (118)
T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHH
Confidence 456788889987664 2 68 99999999999999997531 134799999999764
No 63
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=73.90 E-value=5.3 Score=36.78 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.|.++|-..|. | +++|-..+|+.|.++|||++... ..+.+|+.|+.+++.+
T Consensus 55 ~t~~eLa~~l~---i-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 111 (150)
T 3fm5_A 55 VNQRGVAATMG---L-DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDA 111 (150)
T ss_dssp CCSHHHHHHHT---C-CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHH
T ss_pred cCHHHHHHHHC---C-CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHH
Confidence 66777776663 3 68899999999999999986322 2388999999987533
No 64
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=73.75 E-value=8.4 Score=36.81 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 499 PPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 499 P~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
|...|.++|-..| || +++|-..+|+.|.++|||++... ..+.+|+.|+.++..+
T Consensus 84 ~~~~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 143 (181)
T 2fbk_A 84 PEGLRPTELSALA---AI-SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHL 143 (181)
T ss_dssp SSCBCHHHHHHHC---SC-CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH---CC-CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 3346777776654 66 78899999999999999987421 2488999999987543
No 65
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=73.73 E-value=1.1 Score=35.73 Aligned_cols=20 Identities=30% Similarity=0.903 Sum_probs=17.7
Q ss_pred ccccccccCCCccCCCCCCC
Q 046997 759 QRACIYCQQMGHSSSDCPSQ 778 (807)
Q Consensus 759 ~~~c~~c~~~g~~~~~~~~~ 778 (807)
...|..|++.||+..+||..
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCC
Confidence 35699999999999999984
No 66
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=73.19 E-value=13 Score=33.27 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~ 555 (807)
.|.++|-+. .|+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.++..
T Consensus 48 ~~~~ela~~---l~~-~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 48 VSMSKLIEN---MGC-VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp EEHHHHHHH---CSS-CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred cCHHHHHHH---HCC-ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHH
Confidence 344454443 355 6888999999999999998631 1237899999998753
No 67
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=73.14 E-value=14 Score=33.37 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 44 ~t~~~la~~l---~~-s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (144)
T 1lj9_A 44 IIQEKIAELI---KV-DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII 100 (144)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHH
Confidence 4555655555 44 6788999999999999998742 12378999999987543
No 68
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=73.03 E-value=8 Score=35.91 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhh
Q 046997 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMG 555 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~ 555 (807)
..|.++|-..| || +++|-..+|+.|.++|||.+... ..+.+|+.|+.++..
T Consensus 63 ~~t~~ela~~l---~i-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 63 GSSASEVSDRT---AM-DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp TCCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred CCCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 35667776665 44 77889999999999999987431 347899999998753
No 69
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=72.78 E-value=0.9 Score=38.74 Aligned_cols=21 Identities=33% Similarity=0.812 Sum_probs=16.8
Q ss_pred cccccccccCCCccCCCCCCC
Q 046997 758 RQRACIYCQQMGHSSSDCPSQ 778 (807)
Q Consensus 758 ~~~~c~~c~~~g~~~~~~~~~ 778 (807)
+...|..|+++||++.+||..
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGG
T ss_pred ccCCCCCCCCCCCccccCCCc
Confidence 455699999999999999974
No 70
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.45 E-value=4.2 Score=38.09 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=36.9
Q ss_pred CHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 503 SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 503 Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
|.++|-..| |+ +++|-..+|+.|.++|||++... ..+.+|+.|+.+++.+
T Consensus 69 t~~eLa~~l---~~-~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 124 (161)
T 3e6m_A 69 TVGQLATLG---VM-EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEI 124 (161)
T ss_dssp EHHHHHHHT---TC-CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHH
T ss_pred CHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHH
Confidence 445554443 44 67889999999999999987432 3489999999987543
No 71
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=72.31 E-value=3.8 Score=32.08 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=25.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCcee
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFIS 339 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~IS 339 (807)
..++++||.+.++++++..+|=++|+|.
T Consensus 29 ~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 29 EHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 4677889999999999999999999996
No 72
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=72.12 E-value=3.2 Score=37.88 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||++.. ...+.+|+.|+.+++.+
T Consensus 52 ~t~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 108 (143)
T 3oop_A 52 ISQKEIALWT---KK-DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHH
Confidence 3455655555 45 6788999999999999998742 12488999999987543
No 73
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=71.37 E-value=1.3 Score=35.26 Aligned_cols=21 Identities=29% Similarity=0.744 Sum_probs=18.3
Q ss_pred ccccccccCCCccCCCCCCCC
Q 046997 759 QRACIYCQQMGHSSSDCPSQF 779 (807)
Q Consensus 759 ~~~c~~c~~~g~~~~~~~~~~ 779 (807)
...|..|+++||+..+||...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTT
T ss_pred CCcccccCCCCeehhhCcCCc
Confidence 346999999999999999854
No 74
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=70.75 E-value=5.2 Score=36.11 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHH-hh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALV-MG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li-~~ 555 (807)
.|.++|-+.| || +++|-..+|+.|.++|||.+.. ...+.+|+.|+.++ ..
T Consensus 46 ~~~~ela~~l---~i-s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~ 102 (142)
T 3bdd_A 46 LHQLALQERL---QI-DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITN 102 (142)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTS
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 5666666655 55 7888999999999999998742 12488999999987 53
No 75
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=70.55 E-value=9.8 Score=40.86 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHh--hcCeEEEeecCChhhhHHHHHHHHHhhh
Q 046997 100 DKKDIKKTLEEEAR--RCQWLVLWLDCDREGENIAFEVIEVCRA 141 (807)
Q Consensus 100 ~k~~~~~~lk~~~~--~~d~IiiAtD~DREGE~I~~ei~~~~~~ 141 (807)
+.+.+++.|+++++ +++.|+||||+++| -.++-+.+..
T Consensus 263 Sle~I~rqIk~~vk~~~lksVFIATDa~~~----~~ELk~~L~~ 302 (362)
T 3zy2_A 263 SKQQILEQIVEKVGSIGAKSVFVASDKDHM----IDEINEALKP 302 (362)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEEEESSCCC----HHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCHHH----HHHHHHHhhc
Confidence 45667777777776 56899999999984 2566565543
No 76
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=70.42 E-value=2.1 Score=39.89 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| || +++|...+|+.|.++|||++... ..+.+|++|+.+++.+
T Consensus 52 ~t~~eLa~~l---~~-~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 52 LPMSKIGERL---MV-HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 3445555554 44 68899999999999999986421 2488999999987543
No 77
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=70.37 E-value=11 Score=34.59 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~ 555 (807)
.|.++|-..| || +++|-..+|+.|.++|||.+... ..+.+|+.|+.++..
T Consensus 52 ~t~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 52 LKVSEIAERM---EV-KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp EEHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 3445555544 56 68889999999999999987421 248899999998753
No 78
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=69.98 E-value=3 Score=35.50 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=18.0
Q ss_pred cccccccccCCCccCCCCCC
Q 046997 758 RQRACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 758 ~~~~c~~c~~~g~~~~~~~~ 777 (807)
....|-.||++||++.+||.
T Consensus 45 ~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 45 HTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp CCCBCSSSSCBSSCGGGCSS
T ss_pred CCCeecccCCCCcCcccCCc
Confidence 34679999999999999998
No 79
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=69.95 E-value=1.9 Score=37.07 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC---ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN---TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~---~~l~pT~~G~~li~~l 556 (807)
.|..+|-.. .|| +++|-..+|+.|.++|||..... +.+.+|+.|+.+++.+
T Consensus 31 ~t~~eLa~~---l~i-~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~ 84 (95)
T 2qvo_A 31 VYIQYIASK---VNS-PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQI 84 (95)
T ss_dssp EEHHHHHHH---SSS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHH---HCc-CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHH
Confidence 344454444 355 67899999999999999943211 2489999999987644
No 80
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=69.90 E-value=4.2 Score=37.40 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 500 ~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
...|.++|-..| |+ +++|-..+|+.|.++|||++.. ...+.+|+.|+.+++.+
T Consensus 56 ~~~t~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 114 (148)
T 3jw4_A 56 SGIIQKDLAQFF---GR-RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEF 114 (148)
T ss_dssp TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHH
Confidence 446677766554 45 6788999999999999997642 12488999999987543
No 81
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=69.84 E-value=11 Score=34.24 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-+.| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 57 ~t~~ela~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 113 (150)
T 2rdp_A 57 LTVGELSNKM---YL-ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEV 113 (150)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHH
Confidence 4566666655 45 7888999999999999998732 12388999999987543
No 82
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=69.82 E-value=0.93 Score=35.94 Aligned_cols=20 Identities=25% Similarity=0.730 Sum_probs=0.0
Q ss_pred cccccccCCCccCCCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPSQF 779 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~~~ 779 (807)
+.|..|++.||+..+||...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp --------------------
T ss_pred CccccCCCCCcCHhhCcCCC
Confidence 35999999999999999854
No 83
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=69.56 E-value=1.9 Score=40.88 Aligned_cols=19 Identities=32% Similarity=1.011 Sum_probs=16.6
Q ss_pred cccccccCCCccCCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPSQ 778 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~~ 778 (807)
..|..|++.||+.-+||..
T Consensus 120 ~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 120 KKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCTTTCCSSCCGGGCTTT
T ss_pred CcccccCCcCCEeccCcCC
Confidence 4599999999999999984
No 84
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=69.41 E-value=5.9 Score=36.89 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC-----CceeeechhHHHHHhhccccCccccCchhhHHHHH
Q 046997 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA-----NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574 (807)
Q Consensus 500 ~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~-----~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~ 574 (807)
...|.++|-..|.- +++|...+|+.|.++|||.... ...+.+|++|+.+++.+ ...|+.
T Consensus 51 ~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~------------~~~~~~ 114 (148)
T 4fx0_A 51 IDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA------------VPLWRG 114 (148)
T ss_dssp ---CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHH------------HHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH------------HHHHHH
Confidence 34667777666633 6788999999999999994321 12489999999987533 345666
Q ss_pred HHHHHHcCCCChHH
Q 046997 575 DMKEVSVGNKSKAD 588 (807)
Q Consensus 575 ~L~~I~~G~~~~~~ 588 (807)
..+.+..+--+.+.
T Consensus 115 ~~~~~~~~l~e~~~ 128 (148)
T 4fx0_A 115 VQAEVTASVGDWPR 128 (148)
T ss_dssp HHHHHGGGSSCHHH
T ss_pred HHHHHHccCCHHHH
Confidence 66666665444443
No 85
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=69.31 E-value=11 Score=35.47 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| || +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 60 ~t~~eLa~~l---~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 60 INLATLATLL---GV-QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp EEHHHHHHHH---TS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 4556666655 45 7888999999999999998732 12389999999987543
No 86
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=69.20 E-value=4.9 Score=36.35 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 500 ~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
...|.++|-..| |+ +++|-..+|+.|.++|||++.. ...+.+|+.|+.+++.+
T Consensus 46 ~~~t~~ela~~l---~~-~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~ 104 (139)
T 3eco_A 46 DGLTQNDIAKAL---QR-TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAF 104 (139)
T ss_dssp TCEEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHH
T ss_pred CCcCHHHHHHHh---CC-CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHH
Confidence 345667776666 44 6789999999999999998642 23489999999988543
No 87
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=69.11 E-value=5.4 Score=37.34 Aligned_cols=51 Identities=20% Similarity=0.099 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||++.. ...+.+|+.|+.+++.+
T Consensus 61 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 117 (162)
T 3k0l_A 61 LSNAKLAERS---FI-KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQC 117 (162)
T ss_dssp CCHHHHHHHH---TS-CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHH
Confidence 5677777766 44 7888999999999999998742 12489999999988543
No 88
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=68.41 E-value=2.9 Score=38.65 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||++... ..+.+|+.|+.+++.+
T Consensus 56 ~~~~eLa~~l---~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 112 (149)
T 4hbl_A 56 QTLNSIGRHL---DL-SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV 112 (149)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH
Confidence 4566666666 44 68899999999999999986421 2488999999987543
No 89
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=66.77 E-value=9.1 Score=34.84 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=40.1
Q ss_pred CHHHHHHHHHhCCCC-CccchHHHHHhhcccceEEEcC-------CceeeechhHHHHHhh
Q 046997 503 SEADLLSCMDKAGIG-TDATMHDHIKKLLDRFYAIKDA-------NTRFAPTNIGEALVMG 555 (807)
Q Consensus 503 Tea~Li~~Me~~GIG-TpATra~iI~~L~~R~Yv~~~~-------~~~l~pT~~G~~li~~ 555 (807)
+--+|.+.++..|++ .++|.-.++.+|.+.|||.... ++.+.+|+.|+..+..
T Consensus 35 ~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~ 95 (123)
T 3ri2_A 35 YGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLRE 95 (123)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHH
Confidence 445778888876544 5788899999999999997531 2347899999997753
No 90
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=66.04 E-value=3 Score=44.29 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=8.4
Q ss_pred cCccCCCCCCceE
Q 046997 683 TNTCNSCTPGPVY 695 (807)
Q Consensus 683 ~~~CP~Cg~~~l~ 695 (807)
...||.||+.++.
T Consensus 182 ~~~CPvCGs~P~~ 194 (309)
T 2fiy_A 182 RTLCPACGSPPMA 194 (309)
T ss_dssp CSSCTTTCCCEEE
T ss_pred CCCCCCCCCcCce
Confidence 3468888866554
No 91
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=65.92 E-value=3 Score=34.67 Aligned_cols=19 Identities=32% Similarity=1.011 Sum_probs=17.3
Q ss_pred cccccccCCCccCCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPSQ 778 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~~ 778 (807)
..|..|++.||+..+||..
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTG
T ss_pred CccCCcCCcCCccCcCcCC
Confidence 4599999999999999984
No 92
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=65.60 E-value=4.9 Score=39.82 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhcc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGYD 557 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l~ 557 (807)
.|.++|-..| || +++|-..+|+.|.++|||.+... ..+.+|+.|+.+++.+.
T Consensus 63 ~t~~eLa~~l---~i-~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 120 (207)
T 2fxa_A 63 ASISEIAKFG---VM-HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLL 120 (207)
T ss_dssp EEHHHHHHHT---TC-CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHH
Confidence 3455555544 45 78999999999999999987432 24899999999887664
No 93
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=64.58 E-value=2.9 Score=38.20 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-+.| |+ +++|-..+|+.|.++|||++.. ...+.+|+.|+.+++.+
T Consensus 51 ~t~~eLa~~l---~~-~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (140)
T 3hsr_A 51 LNIKKLGERV---FL-DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPL 107 (140)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHH
T ss_pred cCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHH
Confidence 4566666666 45 7889999999999999998742 12489999999987543
No 94
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=64.55 E-value=3 Score=39.43 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
..|.++|-..| || +++|...+|+.|.++|||++... ..+.+|+.|+.+++.+
T Consensus 62 ~~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 119 (168)
T 3u2r_A 62 GMATLQIADRL---IS-RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDL 119 (168)
T ss_dssp CEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHH
Confidence 34556665554 44 56899999999999999986421 2489999999988644
No 95
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=64.55 E-value=3.7 Score=37.96 Aligned_cols=50 Identities=20% Similarity=0.148 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~ 555 (807)
.|.++|-..| || +++|-..+|+.|.++|||.+... ..+.+|+.|+.+++.
T Consensus 62 ~t~~ela~~l---~~-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 62 RSVSEIGERL---YL-DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred cCHHHHHHHh---CC-CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 4566666655 45 78899999999999999987421 248899999997653
No 96
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=64.39 E-value=9.1 Score=34.30 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=38.4
Q ss_pred CHHHHHHHHHhCCCC----CccchHHHHHhhcccceEEEc-----C---CceeeechhHHHHHh
Q 046997 503 SEADLLSCMDKAGIG----TDATMHDHIKKLLDRFYAIKD-----A---NTRFAPTNIGEALVM 554 (807)
Q Consensus 503 Tea~Li~~Me~~GIG----TpATra~iI~~L~~R~Yv~~~-----~---~~~l~pT~~G~~li~ 554 (807)
+-.+|.+.++..+-| +++|--.++..|.+.|||+.. . .+.+.+|+.|+..+.
T Consensus 27 ~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 90 (116)
T 3f8b_A 27 YVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMR 90 (116)
T ss_dssp CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHH
Confidence 445777777764322 688999999999999999753 1 234789999999774
No 97
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=64.33 E-value=6.2 Score=36.24 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=32.5
Q ss_pred CccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhcc
Q 046997 518 TDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGYD 557 (807)
Q Consensus 518 TpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l~ 557 (807)
+++|-..+++.|.+.|||.+... ..+.+|++|+.++..+.
T Consensus 62 s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 107 (131)
T 1yyv_A 62 SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA 107 (131)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHH
Confidence 78899999999999999986421 24899999999886553
No 98
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=64.31 E-value=1.7 Score=39.38 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|..+|-..| |+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 54 ~t~~eLa~~l---~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~ 110 (127)
T 2frh_A 54 YYLKDIINHL---NY-KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESL 110 (127)
T ss_dssp EEHHHHHHHS---SS-HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 4555655544 44 5789999999999999998631 23488999999988544
No 99
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.13 E-value=4.1 Score=34.43 Aligned_cols=40 Identities=23% Similarity=0.663 Sum_probs=25.0
Q ss_pred cccCCCCCcceEEEecCCCCceeeccCCCCCCcceecCCCccccccccCccCCCCCCceE
Q 046997 636 RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVY 695 (807)
Q Consensus 636 ~~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~~~l~ 695 (807)
..||.| +.+|.. .|+ ++-|.. |.-.+.. ...||+||. ++-
T Consensus 3 ~~CP~C-~~~l~~----~~~-~~~C~~---C~~~~~~----------~afCPeCgq-~Le 42 (81)
T 2jrp_A 3 ITCPVC-HHALER----NGD-TAHCET---CAKDFSL----------QALCPDCRQ-PLQ 42 (81)
T ss_dssp CCCSSS-CSCCEE----CSS-EEECTT---TCCEEEE----------EEECSSSCS-CCC
T ss_pred CCCCCC-CCcccc----CCC-ceECcc---ccccCCC----------cccCcchhh-HHH
Confidence 469999 567763 334 356854 8755432 237999995 443
No 100
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=63.02 E-value=6.9 Score=36.69 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhC-----CCCCccchHHHHHhhcccceEEEc-----C---CceeeechhHHHHHh
Q 046997 502 LSEADLLSCMDKA-----GIGTDATMHDHIKKLLDRFYAIKD-----A---NTRFAPTNIGEALVM 554 (807)
Q Consensus 502 ~Tea~Li~~Me~~-----GIGTpATra~iI~~L~~R~Yv~~~-----~---~~~l~pT~~G~~li~ 554 (807)
.+-.+|.+.|+.. +| +++|.-.++..|.+.|||+.. . .+.+.+|+.|+.++.
T Consensus 55 ~~gyeI~~~l~~~~~~~~~i-s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 119 (145)
T 1xma_A 55 SYGYEISKNIRIKTDELYVI-KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYK 119 (145)
T ss_dssp EEHHHHHHHHHHHHTTSCCC-CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHhhCCccCc-ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHH
Confidence 3556788888753 33 689999999999999999653 1 234899999999764
No 101
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=62.87 E-value=1.7 Score=28.33 Aligned_cols=18 Identities=28% Similarity=0.848 Sum_probs=16.0
Q ss_pred ccccccCCCccCCCCCCC
Q 046997 761 ACIYCQQMGHSSSDCPSQ 778 (807)
Q Consensus 761 ~c~~c~~~g~~~~~~~~~ 778 (807)
-|..|.-+||++.+|+..
T Consensus 5 YCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 5 YCEICEMFGHWATNCNDD 22 (26)
T ss_dssp EETTTTEESSCGGGCCTT
T ss_pred cchHHHHhCcccccCCcc
Confidence 399999999999999863
No 102
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=62.55 E-value=15 Score=33.98 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~ 555 (807)
.|.++|-..| || +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.
T Consensus 67 ~t~~ela~~l---~i-s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 67 LPIGTLGIFA---VV-EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 4556666655 55 6888999999999999998742 1238899999998753
No 103
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=62.19 E-value=5.8 Score=35.23 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC--CceeeechhHHHHHhhcc
Q 046997 499 PPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA--NTRFAPTNIGEALVMGYD 557 (807)
Q Consensus 499 P~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~--~~~l~pT~~G~~li~~l~ 557 (807)
|.+.|-++|-+.++ || +++|-..++..|.+.|+|++.. ...+.+|++|+.++..+.
T Consensus 40 ~~~~~~~eL~~~l~--gi-s~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l~ 97 (111)
T 3df8_A 40 STRQNFNDIRSSIP--GI-SSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLM 97 (111)
T ss_dssp SSCBCHHHHHHTST--TC-CHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcc--CC-CHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHHH
Confidence 44444566655442 44 6788999999999999998752 345899999999886664
No 104
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=61.44 E-value=14 Score=33.21 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHhCCCC--CccchHHHHHhhcccceEEEcC--------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIG--TDATMHDHIKKLLDRFYAIKDA--------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIG--TpATra~iI~~L~~R~Yv~~~~--------~~~l~pT~~G~~li~~l 556 (807)
.+=.+|.+.++..|.- +++|--.++..|.+.|||.... ++.+.+|+.|+..+..+
T Consensus 25 ~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 89 (117)
T 4esf_A 25 TYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELF 89 (117)
T ss_dssp BCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHH
Confidence 3445777888766542 6788999999999999997531 23478999999977543
No 105
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=61.28 E-value=8.3 Score=35.17 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceec--cCCCCcccCCcccHHHHHHHH
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISY--PRTETDSFSSGTNLHGIVQEQ 361 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISY--PRTds~~l~~~~~~~~il~~~ 361 (807)
.+.++++|+|+..+..+.++|-++|||+- .+.|+..+++.+++..++..+
T Consensus 55 ~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL 106 (128)
T 2vn2_A 55 AELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKL 106 (128)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHH
Confidence 34455699999999999999999999876 233444555556777776665
No 106
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=60.75 E-value=6.9 Score=48.87 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=48.3
Q ss_pred CCeeeeeeeEeecCccCCCCCCCHHHHHHHHH-hCCCCCccchHHHHHhhcccceEE
Q 046997 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD-KAGIGTDATMHDHIKKLLDRFYAI 536 (807)
Q Consensus 481 G~~~~~~~~~i~e~~T~PP~~~Tea~Li~~Me-~~GIGTpATra~iI~~L~~R~Yv~ 536 (807)
+..+.+.+++.++++..||++||-++|...+- +.|++..-|.. |.+.|++.|||.
T Consensus 795 ~~~~~V~~v~~k~~~~~pp~pf~t~~Lq~~a~~~~g~s~~~tm~-iaQ~LYe~g~iT 850 (1104)
T 4ddu_A 795 DDVVTVVELQEAEEEKNPLPPYTTSSALSEISQKLRLGVQEVMD-ILQDLFEKGFIT 850 (1104)
T ss_dssp CCEEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHSSCCHHHHHH-HHHHHHHTTSBS
T ss_pred CCcEEEEEEEeeeEEecCCCCCCHHHHHHHHHHHcCCCHHHHHH-HHHHHHhCCcee
Confidence 56778888999999999999999999999886 57998888875 899999999995
No 107
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=60.35 E-value=7.4 Score=33.25 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC-----CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA-----NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~-----~~~l~pT~~G~~li~~l 556 (807)
.|..+|...+ || +++|-..+|+.|.++|||.... ...+..|+.|..++..+
T Consensus 35 ~s~~ela~~l---~i-s~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~ 90 (109)
T 1sfx_A 35 MRVSEIAREL---DL-SARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHH
Confidence 5666766666 55 6788999999999999997632 12367899999887544
No 108
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=58.96 E-value=5.2 Score=36.46 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHH
Q 046997 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVS 580 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~ 580 (807)
..|..+|-+.| || +++|-..+|+.|.++|||.+.. +.+.+|+.|..+...+. .....||..+..
T Consensus 31 ~~s~~ela~~l---~i-s~~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~~~~~~~---------~~~~~~~~~~~~-- 94 (139)
T 2x4h_A 31 GAKINRIAKDL---KI-APSSVFEEVSHLEEKGLVKKKE-DGVWITNNGTRSINYLI---------KAHRVIEILLVN-- 94 (139)
T ss_dssp CBCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHHH---------HHHHHHHHHHHH--
T ss_pred CcCHHHHHHHh---CC-ChHHHHHHHHHHHHCCCEEecC-CeEEEChhHHHHHHHHH---------HHHHHHHHHHHH--
Confidence 34566665554 56 6888999999999999999876 46899999999764332 123456666665
Q ss_pred cCCCChHHH
Q 046997 581 VGNKSKADV 589 (807)
Q Consensus 581 ~G~~~~~~~ 589 (807)
.| .+.++.
T Consensus 95 ~~-~~~~e~ 102 (139)
T 2x4h_A 95 IG-IDKQTA 102 (139)
T ss_dssp HT-CCHHHH
T ss_pred cC-CCHHHH
Confidence 23 455443
No 109
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=58.85 E-value=4.8 Score=36.29 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-.. .|+ +++|-..+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 49 ~~~~~la~~---l~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 105 (138)
T 1jgs_A 49 ITPVELKKV---LSV-DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQC 105 (138)
T ss_dssp BCHHHHHHH---HTC-CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHH---HCC-ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHH
Confidence 355555543 355 7788999999999999998732 12388999999987543
No 110
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=58.78 E-value=4 Score=38.58 Aligned_cols=19 Identities=21% Similarity=0.674 Sum_probs=17.6
Q ss_pred ccccccccCCCccCCCCCC
Q 046997 759 QRACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 759 ~~~c~~c~~~g~~~~~~~~ 777 (807)
...|..|++.||++.+||.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 5679999999999999997
No 111
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=57.66 E-value=14 Score=33.50 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhh
Q 046997 514 AGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMG 555 (807)
Q Consensus 514 ~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~ 555 (807)
.|| +++|-..+|..|.++|||++... ..+.+|+.|+.++..
T Consensus 64 l~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 64 LYL-DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp TTC-CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HCC-CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 355 78889999999999999987421 237899999987643
No 112
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=57.52 E-value=5.5 Score=36.23 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.0
Q ss_pred ccccccccccCCCccCCCCCC
Q 046997 757 HRQRACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 757 ~~~~~c~~c~~~g~~~~~~~~ 777 (807)
..+..|..|++.||+..+||+
T Consensus 103 ~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 103 FHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCCcCCCCCCCcCcccCcC
Confidence 456889999999999999996
No 113
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=57.19 E-value=3.7 Score=36.15 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.+-++|.+.|. || +++|-..+++.|.+.|||++... ..+.+|+.|+.++..+
T Consensus 28 ~~~~eLa~~l~--~i-s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~ 85 (107)
T 2hzt_A 28 KRTSELKRLMP--NI-TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGIL 85 (107)
T ss_dssp BCHHHHHHHCT--TS-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHH
T ss_pred CCHHHHHHHhc--CC-CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHH
Confidence 34455555442 33 77889999999999999986421 2489999999876544
No 114
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.95 E-value=8.2 Score=34.75 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
.|.++|-.. .|| +++|-..+|+.|.++|||.+.. ...+.+|+.|+.++..+
T Consensus 51 ~t~~ela~~---l~~-s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 51 MESYQLANQ---ACI-LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp EEHHHHHHH---TTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHH---HCC-CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 344454443 355 6788999999999999998642 12378999999987543
No 115
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=56.52 E-value=9.7 Score=34.18 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC---C---ceeeechhHHHHHhh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA---N---TRFAPTNIGEALVMG 555 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~---~---~~l~pT~~G~~li~~ 555 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||.+.. + ..+.+|+.|+.++..
T Consensus 53 ~t~~ela~~l---~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 53 CPQNQLGRLT---AM-DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp BCHHHHHHHT---TC-CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 4455555443 55 6788999999999999998731 1 238899999998753
No 116
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=56.05 E-value=18 Score=32.22 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=40.0
Q ss_pred CHHHHHHHHHhCCC--CCccchHHHHHhhcccceEEEc-----C---CceeeechhHHHHHhhc
Q 046997 503 SEADLLSCMDKAGI--GTDATMHDHIKKLLDRFYAIKD-----A---NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 503 Tea~Li~~Me~~GI--GTpATra~iI~~L~~R~Yv~~~-----~---~~~l~pT~~G~~li~~l 556 (807)
+-.+|.+.|+..|. =+++|.-.++..|.+.|||+.. + ++.+.+|+.|+..+..+
T Consensus 24 ~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 87 (115)
T 4esb_A 24 YGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEF 87 (115)
T ss_dssp EHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHH
Confidence 34577888877553 2688999999999999999752 1 12378999999977543
No 117
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=55.73 E-value=6.7 Score=36.55 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=38.5
Q ss_pred CHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhc
Q 046997 503 SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY 556 (807)
Q Consensus 503 Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l 556 (807)
|..+|-.. .|+ +.+|-..+|..|.+.|||....++.+.+|+.|..++..+
T Consensus 56 ~~~~la~~---l~v-s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~ 105 (155)
T 2h09_A 56 RQVDMAAR---LGV-SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQES 105 (155)
T ss_dssp CHHHHHHH---HTS-CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHH
T ss_pred CHHHHHHH---hCc-CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHH
Confidence 45554443 467 677888999999999999887556689999999987544
No 118
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=55.65 E-value=5.1 Score=36.53 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC----C--ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA----N--TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~----~--~~l~pT~~G~~li~~l 556 (807)
.|.++|-..| |+ +++|-..+|+.|.++|||.+.. + ..+.+|+.|..++..+
T Consensus 52 ~t~~eLa~~l---~~-s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~ 108 (146)
T 3tgn_A 52 LTNSELARRL---NV-SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEH 108 (146)
T ss_dssp CCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHH
T ss_pred CCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHH
Confidence 7788887777 45 6788899999999999998642 1 2489999999987543
No 119
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=55.16 E-value=6.6 Score=40.21 Aligned_cols=66 Identities=9% Similarity=0.083 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC-CceeeechhHHHHHhhccccCccccCchhhHHHHHHHHHHH
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA-NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVS 580 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~-~~~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~ 580 (807)
.|-++|-+.| |+ +++|-..++++|.+.|||...+ .+.+.+|++|+.++..... ...|.+..++++
T Consensus 167 ~s~~eLA~~l---gl-sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~~----------~~~w~~aq~~~~ 232 (244)
T 2wte_A 167 TGITELAKML---DK-SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNKS----------VIESSKSSEELV 232 (244)
T ss_dssp BCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC-----------------------
T ss_pred CCHHHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHhc----------ccccHHHHHHHH
Confidence 4445554444 44 5788899999999999998752 2358999999998765432 235666666665
Q ss_pred c
Q 046997 581 V 581 (807)
Q Consensus 581 ~ 581 (807)
+
T Consensus 233 ~ 233 (244)
T 2wte_A 233 K 233 (244)
T ss_dssp -
T ss_pred h
Confidence 5
No 120
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=54.91 E-value=3.3 Score=36.40 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=32.1
Q ss_pred CccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhcc
Q 046997 518 TDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGYD 557 (807)
Q Consensus 518 TpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l~ 557 (807)
+++|-..+++.|.+.|||++... ..+.+|++|+.++..+.
T Consensus 52 s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 97 (107)
T 2fsw_A 52 SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIID 97 (107)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHH
Confidence 78899999999999999986421 24899999998775543
No 121
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=54.50 E-value=19 Score=31.61 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=37.1
Q ss_pred HHHHHHHHhC-CCCCccchHHHHHhhcccceEEEc----CC---ceeeechhHHHHHhhc
Q 046997 505 ADLLSCMDKA-GIGTDATMHDHIKKLLDRFYAIKD----AN---TRFAPTNIGEALVMGY 556 (807)
Q Consensus 505 a~Li~~Me~~-GIGTpATra~iI~~L~~R~Yv~~~----~~---~~l~pT~~G~~li~~l 556 (807)
.+|.+.+++. +| +++|...++..|.+.|||+.. .+ +.+.+|+.|+.++..+
T Consensus 26 yel~~~l~~~~~i-~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~ 84 (108)
T 3l7w_A 26 YDISQTIKLIASI-KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYL 84 (108)
T ss_dssp HHHHHHHTTTCCC-CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHH
Confidence 4566666542 44 688999999999999999753 22 2377999999987543
No 122
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=53.50 E-value=10 Score=33.46 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC------ceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN------TRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~------~~l~pT~~G~~li~~l 556 (807)
.|-++|-+.|. || +++|-..+++.|.+.|||++... ..+.+|+.|+.++..+
T Consensus 36 ~~~~eLa~~l~--~i-s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~~ 93 (112)
T 1z7u_A 36 KRNGELMRALD--GI-TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDAL 93 (112)
T ss_dssp BCHHHHHHHST--TC-CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHhc--cC-CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHHH
Confidence 45566655552 55 78899999999999999986421 2378999999987544
No 123
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=52.92 E-value=9.6 Score=35.29 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=38.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceecc-CCCC-cccCCcccHHHHHHHH
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYP-RTET-DSFSSGTNLHGIVQEQ 361 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYP-RTds-~~l~~~~~~~~il~~~ 361 (807)
.+.++++|+|+.++.++.++|-++|||+.- |+|. ....+.+++..++..+
T Consensus 55 ~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL 106 (135)
T 2v79_A 55 NQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKL 106 (135)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHH
Confidence 566778999999999999999999999974 5565 3334445666666655
No 124
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=51.48 E-value=11 Score=32.88 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC-C--ceeeechhHHHHH
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA-N--TRFAPTNIGEALV 553 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~-~--~~l~pT~~G~~li 553 (807)
.|-.+|-+.+ || +++|-..++..|.+.|||.... + ..+.+|+.|...+
T Consensus 35 ~~~~ela~~l---~i-s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~ 85 (114)
T 2oqg_A 35 QSASSLATRL---PV-SRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKT 85 (114)
T ss_dssp BCHHHHHHHS---SS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHH
T ss_pred CCHHHHHHHH---Cc-CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHH
Confidence 4555554444 56 6788999999999999997632 1 2378999997654
No 125
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=50.84 E-value=8 Score=38.38 Aligned_cols=49 Identities=8% Similarity=0.010 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhcc
Q 046997 504 EADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYD 557 (807)
Q Consensus 504 ea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~ 557 (807)
-.+|-+.| |+ +++|-...+++|.+.|||+..+ +.+.+|+.|+.+...+.
T Consensus 33 ~~~LA~~L---gv-S~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~G~~~A~~i~ 81 (200)
T 2p8t_A 33 RKQISERL---EL-GEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRDKLL 81 (200)
T ss_dssp HHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHHHHH
T ss_pred HHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEEeC-CCeEECHHHHHHHHHHH
Confidence 34444444 34 4778888999999999999876 56899999998876654
No 126
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=50.61 E-value=11 Score=32.94 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=26.7
Q ss_pred chHHHHHhhcccceEEEcCCceeeechhHHHHHhhc
Q 046997 521 TMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGY 556 (807)
Q Consensus 521 Tra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l 556 (807)
|...-|+.|+++|||+..+. -+..|+.|+.+++.-
T Consensus 47 tvsrnl~~L~r~GlVe~~~~-Dl~LT~~G~~~l~~a 81 (95)
T 1bja_A 47 VVNSNIGVLIKKGLVEKSGD-GLIITGEAQDIISNA 81 (95)
T ss_dssp HHHHHHHHHHTTTSEEEETT-EEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeecCCC-CeeeCHhHHHHHHHH
Confidence 44456888999999984443 489999999988643
No 127
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.06 E-value=11 Score=28.86 Aligned_cols=30 Identities=20% Similarity=0.658 Sum_probs=18.2
Q ss_pred ccccCCCCCcceEEEecCCCCceeeccCCCCCCccee
Q 046997 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVW 671 (807)
Q Consensus 635 ~~~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~ 671 (807)
...||.| |+.+..... +.. +.| +.|.++.|
T Consensus 19 ~k~CP~C-G~~~fm~~~--~~R-~~C---~kCG~t~~ 48 (50)
T 3j20_Y 19 NKFCPRC-GPGVFMADH--GDR-WAC---GKCGYTEW 48 (50)
T ss_dssp SEECSSS-CSSCEEEEC--SSE-EEC---SSSCCEEE
T ss_pred cccCCCC-CCceEEecC--CCe-EEC---CCCCCEEE
Confidence 4679999 454444432 122 677 46888876
No 128
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=48.40 E-value=17 Score=28.25 Aligned_cols=39 Identities=26% Similarity=0.536 Sum_probs=22.5
Q ss_pred ccCccCCCCCCceEEEEeeccCccCCCCCccCccccCCCCChh
Q 046997 682 TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDET 724 (807)
Q Consensus 682 t~~~CP~Cg~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~~~ 724 (807)
+...||+||...++..+...|...-+ ...++.|+ .|...
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep---~T~fy~C~-~Cg~~ 52 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEP---STIFYKCT-KCGHT 52 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCS---SEEEEEES-SSCCE
T ss_pred eEeECCCCCCCEEEEEEeecccCCCC---CcEEEEcC-CCCCE
Confidence 46789999975555444444432111 11346798 88754
No 129
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=47.24 E-value=13 Score=37.98 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=36.9
Q ss_pred CHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC---C---ceeeechhHHHHHhhcc
Q 046997 503 SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA---N---TRFAPTNIGEALVMGYD 557 (807)
Q Consensus 503 Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~---~---~~l~pT~~G~~li~~l~ 557 (807)
|..+|-..| ++- ++|...+|++|.+.|||.+.. . ..+.+|++|+.+++.+.
T Consensus 52 ~~~el~~~l---~~~-~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~ 108 (250)
T 1p4x_A 52 PFKKIVSDL---CYK-QSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERV 108 (250)
T ss_dssp EHHHHHHHS---SSC-GGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHH---CCC-HhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 344444443 343 899999999999999998732 1 23889999999886543
No 130
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=45.67 E-value=9.9 Score=32.13 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=30.8
Q ss_pred CCCCCccchHHHHHhhcccceEEEcC-----C-ceeeechhHHHHHh
Q 046997 514 AGIGTDATMHDHIKKLLDRFYAIKDA-----N-TRFAPTNIGEALVM 554 (807)
Q Consensus 514 ~GIGTpATra~iI~~L~~R~Yv~~~~-----~-~~l~pT~~G~~li~ 554 (807)
.|| +++|-..+|+.|.+.|||.... . ..+.+|+.|..++.
T Consensus 40 l~i-s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~ 85 (100)
T 1ub9_A 40 LDL-TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAK 85 (100)
T ss_dssp TTC-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HCc-CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHH
Confidence 355 6778999999999999998432 1 24789999987664
No 131
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=45.61 E-value=16 Score=32.98 Aligned_cols=18 Identities=39% Similarity=0.984 Sum_probs=9.9
Q ss_pred cccccccCCCccCCCCCC
Q 046997 760 RACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 760 ~~c~~c~~~g~~~~~~~~ 777 (807)
..|..|+++||+..+||.
T Consensus 43 ~~C~~Cg~~GH~~~~C~~ 60 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPH 60 (124)
T ss_dssp SCSSSSSCSSSSTTTSCC
T ss_pred ccccccCCCCCccccCcC
Confidence 455555555555555554
No 132
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=45.25 E-value=8.4 Score=40.08 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=19.4
Q ss_pred ccCccCCCCCCceEEEEeeccCccCCCCCccCccccCCCCC
Q 046997 682 TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCD 722 (807)
Q Consensus 682 t~~~CP~Cg~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~ 722 (807)
.+++||.|| .++.++..-.|.. +.|| .|+
T Consensus 241 ~G~pC~~CG-~~I~~~~~~gR~t----------~~CP-~CQ 269 (271)
T 2xzf_A 241 TGEKCSRCG-AEIQKIKVAGRGT----------HFCP-VCQ 269 (271)
T ss_dssp TTSBCTTTC-CBCEEEEETTEEE----------EECT-TTS
T ss_pred CCCCCCCCC-CEeeEEEECCCce----------EECC-CCC
Confidence 467899999 5777655433332 4499 886
No 133
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=45.07 E-value=8.4 Score=40.00 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=19.3
Q ss_pred ccCccCCCCCCceEEEEeeccCccCCCCCccCccccCCCCC
Q 046997 682 TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCD 722 (807)
Q Consensus 682 t~~~CP~Cg~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~ 722 (807)
.+++||.|| .++.++..-.|.. +.|| .|+
T Consensus 239 ~g~pC~~CG-~~I~~~~~~gR~t----------~~CP-~CQ 267 (268)
T 1k82_A 239 KGEPCRVCG-TPIVATKHAQRAT----------FYCR-QCQ 267 (268)
T ss_dssp TTSBCTTTC-CBCEEEEETTEEE----------EECT-TTC
T ss_pred CCCCCCCCC-CEeeEEEECCCce----------EECC-CCC
Confidence 467899999 5777655433332 4499 886
No 134
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=45.04 E-value=4.4 Score=33.79 Aligned_cols=42 Identities=17% Similarity=0.417 Sum_probs=22.3
Q ss_pred cccCCCCCcceEEEecCCCCceeeccCCCCCCcceecCCCccccccccCccCCCCC
Q 046997 636 RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTP 691 (807)
Q Consensus 636 ~~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~ 691 (807)
-+||.|+++.|+..... +-+ .|..+..++. .+....|+.||.
T Consensus 3 m~Cp~Cg~~~l~~~~~~---~~~---~~~G~~~~I~--------~Vp~~~C~~CGE 44 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKD---IPY---TFRGRKTVLK--------GIHGLYCVHCEE 44 (78)
T ss_dssp CBCTTTSSSBEEEEEEE---EEE---EETTEEEEEE--------EEEEEEETTTCC
T ss_pred eECCCCCCCeeEeEEEE---EEE---EECCEEEEEc--------CceeEECCCCCC
Confidence 37999966667644321 001 1223333332 234567999985
No 135
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=44.52 E-value=8.7 Score=40.02 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=19.1
Q ss_pred ccCccCCCCCCceEEEEeeccCccCCCCCccCccccCCCCC
Q 046997 682 TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCD 722 (807)
Q Consensus 682 t~~~CP~Cg~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~ 722 (807)
.+++||.|| .++.++..-+|.. +.|| .|+
T Consensus 244 ~g~pC~~CG-~~I~~~~~~gR~t----------~~CP-~CQ 272 (273)
T 3u6p_A 244 QGNPCKRCG-TPIEKTVVAGRGT----------HYCP-RCQ 272 (273)
T ss_dssp TTSBCTTTC-CBCEEEEETTEEE----------EECT-TTC
T ss_pred CcCCCCCCC-CeEEEEEECCCCe----------EECC-CCC
Confidence 467899999 5777654433322 4499 886
No 136
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=44.49 E-value=8.7 Score=39.74 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=19.1
Q ss_pred ccCccCCCCCCceEEEEeeccCccCCCCCccCccccCCCCC
Q 046997 682 TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCD 722 (807)
Q Consensus 682 t~~~CP~Cg~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~ 722 (807)
.+++||.|| .++.++..-.|.. +.|| .|+
T Consensus 233 ~g~pC~~CG-~~I~~~~~~gR~t----------~~CP-~CQ 261 (262)
T 1k3x_A 233 DGEPCERCG-SIIEKTTLSSRPF----------YWCP-GCQ 261 (262)
T ss_dssp TTSBCTTTC-CBCEEEEETTEEE----------EECT-TTC
T ss_pred CcCCCCCCC-CEeEEEEECCCCe----------EECC-CCC
Confidence 467899999 5777654433332 4499 886
No 137
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=44.46 E-value=18 Score=33.36 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=39.5
Q ss_pred HHhCCCCCccchHH---HHHhhcccceEEEcCCc-----eeeechhHHHHHhhccccCcccc
Q 046997 511 MDKAGIGTDATMHD---HIKKLLDRFYAIKDANT-----RFAPTNIGEALVMGYDDMGYELW 564 (807)
Q Consensus 511 Me~~GIGTpATra~---iI~~L~~R~Yv~~~~~~-----~l~pT~~G~~li~~l~~~~~~l~ 564 (807)
+...|||.+-++.. +|..|+..||+..+.+. .+..|++|+.++..-...+++|.
T Consensus 56 l~tfGigk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~~~~l~ 117 (134)
T 3aaf_A 56 HSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTESQSLI 117 (134)
T ss_dssp STTTTTTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHHTTSCCCCE
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHHhCCccCCCcee
Confidence 35679999877665 69999999999875433 28999999998876543333443
No 138
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=44.41 E-value=22 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.545 Sum_probs=26.5
Q ss_pred cccCCCCCcceEEEecCCCCceeeccCCCCCCcceecCCCccccccccCccCCCCCCceEEE
Q 046997 636 RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLI 697 (807)
Q Consensus 636 ~~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~~~l~~~ 697 (807)
..||.| +.+|... |.. +-|+. |.-.+.. ...||+|+. +|-+.
T Consensus 33 ~~CP~C-q~eL~~~----g~~-~hC~~---C~~~f~~----------~a~CPdC~q-~LevL 74 (101)
T 2jne_A 33 LHCPQC-QHVLDQD----NGH-ARCRS---CGEFIEM----------KALCPDCHQ-PLQVL 74 (101)
T ss_dssp CBCSSS-CSBEEEE----TTE-EEETT---TCCEEEE----------EEECTTTCS-BCEEE
T ss_pred ccCccC-CCcceec----CCE-EECcc---ccchhhc----------cccCcchhh-HHHHH
Confidence 579999 5777642 333 45864 7754432 346999995 55543
No 139
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=44.27 E-value=7.7 Score=34.45 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHh-CCCCCccchHHHHHhhcccceEEEcC-Cc---eeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDK-AGIGTDATMHDHIKKLLDRFYAIKDA-NT---RFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~-~GIGTpATra~iI~~L~~R~Yv~~~~-~~---~l~pT~~G~~li~~l 556 (807)
.|..+|...|.. .+| +++|-..+|+.|.++|||.+.. ++ .+.+|+.|..+...+
T Consensus 25 ~t~~ela~~l~~~~~~-s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 25 ASANNIIEEIQMQKDW-SPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp EEHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred cCHHHHHHHHhccCCC-cHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 577787777753 234 6899999999999999998642 22 257999999987543
No 140
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=44.24 E-value=33 Score=30.64 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhCCC--CCccchHHHHHhhcccceEEEc-----C---CceeeechhHHHHHhh
Q 046997 503 SEADLLSCMDKAGI--GTDATMHDHIKKLLDRFYAIKD-----A---NTRFAPTNIGEALVMG 555 (807)
Q Consensus 503 Tea~Li~~Me~~GI--GTpATra~iI~~L~~R~Yv~~~-----~---~~~l~pT~~G~~li~~ 555 (807)
+=.+|.+.++..|. =+++|--.++..|.+.|||+.. . ++.+.+|+.|+..+..
T Consensus 28 ~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~ 90 (116)
T 3hhh_A 28 YGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELAD 90 (116)
T ss_dssp CHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHH
Confidence 34578888877554 2578899999999999999753 1 2347899999997643
No 141
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=44.18 E-value=8.9 Score=39.81 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=18.9
Q ss_pred ccCccCCCCCCceEEEEeeccCccCCCCCccCccccCCCCC
Q 046997 682 TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCD 722 (807)
Q Consensus 682 t~~~CP~Cg~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~ 722 (807)
.+++||.|| .++.++..-.|. . +.|| .|+
T Consensus 234 ~g~pC~~CG-~~I~~~~~~gR~-t---------~~CP-~CQ 262 (266)
T 1ee8_A 234 EGLPCPACG-RPVERRVVAGRG-T---------HFCP-TCQ 262 (266)
T ss_dssp TTSBCTTTC-CBCEEEESSSCE-E---------EECT-TTT
T ss_pred CCCCCCCCC-CEeeEEEECCCc-e---------EECC-CCC
Confidence 467899999 567765443332 2 4499 886
No 142
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=43.08 E-value=7.6 Score=39.84 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhc
Q 046997 501 LLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 501 ~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l 556 (807)
..|.++|-..| |+ +++|...+|+.|.++|||.+.. ...+.+|+.|+.+++.+
T Consensus 174 ~~t~~eLa~~l---~i-~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~ 231 (250)
T 1p4x_A 174 IVLLKDLIETI---HH-KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp CEEHHHHHHHS---SS-CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CcCHHHHHHHH---CC-ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHH
Confidence 45667776665 44 6889999999999999998732 12488999999988543
No 143
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=41.67 E-value=16 Score=32.70 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=30.7
Q ss_pred CccchHHHHHhhcccceEEEcCCceeeechhHHHHHh
Q 046997 518 TDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVM 554 (807)
Q Consensus 518 TpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~ 554 (807)
++.+-..+|..|.+.|+|+..+...+.+|+.|+.++.
T Consensus 42 S~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 42 SKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp CHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHH
Confidence 4556788999999999999765556899999998875
No 144
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=41.65 E-value=32 Score=30.78 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHHHHHhC---CCCCccchHHHHHhhcccceEEEcC--------CceeeechhHHHHHhhc
Q 046997 504 EADLLSCMDKA---GIGTDATMHDHIKKLLDRFYAIKDA--------NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 504 ea~Li~~Me~~---GIGTpATra~iI~~L~~R~Yv~~~~--------~~~l~pT~~G~~li~~l 556 (807)
-.+|.+.|+.. .| +++|--.++..|.+.|||+... .+.+.+|+.|+..+..+
T Consensus 30 gyel~~~l~~~~~~~i-~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~ 92 (117)
T 3elk_A 30 GYELQKSMFETTGQAL-PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDH 92 (117)
T ss_dssp HHHHHHHHHHHHSCCC-CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCC-CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHH
Confidence 45677777753 25 5789999999999999997531 13478999999987544
No 145
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=41.64 E-value=8 Score=36.12 Aligned_cols=49 Identities=12% Similarity=0.268 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC-----CceeeechhHHHHHh
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA-----NTRFAPTNIGEALVM 554 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~-----~~~l~pT~~G~~li~ 554 (807)
.+-++|-+.| || +++|-+.+|+.|.+.|||++.. ...+.+|++|+.++.
T Consensus 38 ~~~~eLa~~l---gi-s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~ 91 (146)
T 2f2e_A 38 TRFGEFQKSL---GL-AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFP 91 (146)
T ss_dssp CSHHHHHHHH---CC-CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHH
T ss_pred CCHHHHHHHh---CC-CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHH
Confidence 3455665555 56 6788999999999999998742 234789999988664
No 146
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=40.25 E-value=77 Score=28.21 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEc---C-CceeeechhHHHHH
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKD---A-NTRFAPTNIGEALV 553 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~---~-~~~l~pT~~G~~li 553 (807)
.|.++|-+.| |+ +++|-..++++|.++|||.+. + ++.+.++..|...+
T Consensus 42 ~t~~ela~~l---~~-~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~ 93 (152)
T 1ku9_A 42 LTISDIMEEL---KI-SKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSI 93 (152)
T ss_dssp EEHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHH
T ss_pred CCHHHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHHH
Confidence 6667776666 55 788999999999999999874 2 23345565665444
No 147
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=40.19 E-value=35 Score=30.33 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCC----CccchHHHHHhhcccceEEEc-----C-C---ceeeechhHHHHHh
Q 046997 504 EADLLSCMDKAGIG----TDATMHDHIKKLLDRFYAIKD-----A-N---TRFAPTNIGEALVM 554 (807)
Q Consensus 504 ea~Li~~Me~~GIG----TpATra~iI~~L~~R~Yv~~~-----~-~---~~l~pT~~G~~li~ 554 (807)
--+|.+.++..+ | ++.|--.++..|.+.|||+.. . + +.+.+|+.|+.++.
T Consensus 38 Gyei~~~l~~~~-~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 100 (115)
T 2dql_A 38 GTELIQQLETEH-PTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAE 100 (115)
T ss_dssp HHHHHHHHHHHC-TTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHH
Confidence 345555555432 3 578888999999999999752 1 1 34899999998764
No 148
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=39.69 E-value=18 Score=30.43 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=18.0
Q ss_pred cccccCCCccCCCCCCCCCCCccc
Q 046997 762 CIYCQQMGHSSSDCPSQFSGSRNA 785 (807)
Q Consensus 762 c~~c~~~g~~~~~~~~~~~~~~~~ 785 (807)
|++||-..-+=+.|..-++.+|-+
T Consensus 44 lkACGA~~yFC~~C~~LiSkkrv~ 67 (81)
T 2jrp_A 44 LKACGAVDYFCQNGHGLISKKRVN 67 (81)
T ss_dssp EEETTEEEECCTTTTCCCCTTSSE
T ss_pred HHhcCCcCeeeccCCCEeecceEE
Confidence 888987777777787777776653
No 149
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=39.38 E-value=68 Score=27.78 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhhcCCCCeEEEEEecccCHHHHHHHHHcCCCCCcchHHHHH
Q 046997 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180 (807)
Q Consensus 101 k~~~~~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~~~~~~~v~R~~~s~lt~~~I~~A~~nl~~~~~~l~~a~~ 180 (807)
..++.+.|++ .++..||+|.|++.. +-.+|..+|...+ .|+..+ .|..++=.|+-.-...--.+.++++
T Consensus 24 ~~~v~kai~~--gka~lViiA~D~~~~---~~~~i~~~c~~~~--vp~~~~----~s~~eLG~A~Gk~~~~~~ai~D~g~ 92 (101)
T 3v7q_A 24 EDLVIKEIRN--ARAKLVLLTEDASSN---TAKKVTDKCNYYK--VPYKKV----ESRAVLGRSIGKEARVVVAVTDQGF 92 (101)
T ss_dssp HHHHHHHHHT--TCCSEEEEETTSCHH---HHHHHHHHHHHTT--CCEEEE----SCHHHHHHHTTSSCCSEEEECCHHH
T ss_pred hhhhHHHHhc--CceeEEEEecccccc---chhhhcccccccC--CCeeee----chHHHHHhhhCccceEEEEEeccHH
Confidence 3445555543 467899999999975 4566767776544 355443 6899999998653212234567777
Q ss_pred HHHHHhH
Q 046997 181 ARQEIDL 187 (807)
Q Consensus 181 aR~~~D~ 187 (807)
|+.+.+.
T Consensus 93 a~~i~~~ 99 (101)
T 3v7q_A 93 ANKLISL 99 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776654
No 150
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=38.10 E-value=50 Score=29.56 Aligned_cols=39 Identities=13% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCcceEEEecCCCCceeeccCCCCCCcceecCCCccccccccC-ccCCCCCC
Q 046997 641 CQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTN-TCNSCTPG 692 (807)
Q Consensus 641 C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~~p~~~~~~~~t~~-~CP~Cg~~ 692 (807)
|.+..|.+.... + .|-|. +|.+.+.... ... .||.||+.
T Consensus 60 ~e~a~L~i~~~p-~--~~~C~---~CG~~~e~~~-------~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 60 CKDAILDIVDEK-V--ELECK---DCSHVFKPNA-------LDYGVCEKCHSK 99 (119)
T ss_dssp TSSCCEEEEEEC-C--EEECS---SSSCEECSCC-------STTCCCSSSSSC
T ss_pred hcCcEEEEEecc-c--eEEcC---CCCCEEeCCC-------CCCCcCccccCC
Confidence 334566655432 2 37885 4988766422 245 79999964
No 151
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=37.70 E-value=11 Score=35.89 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=21.5
Q ss_pred ccccCCCCCcceEEEecCCCCceeeccCC----CCCCcceecC
Q 046997 635 VRQCGICQESNMVLKKSRDGNLMVGCLAF----PQCRNAVWLP 673 (807)
Q Consensus 635 ~~~CP~C~g~~lv~r~~k~G~~f~gCs~y----P~C~~~~~~p 673 (807)
..+||.|+ |.++... + -|.|++| ..|.|...-|
T Consensus 78 l~~CP~C~-G~l~y~~---~--~Y~C~G~isewtkC~~~t~~p 114 (160)
T 2riq_A 78 LLPCEECS-GQLVFKS---D--AYYCTGDVTAWTKCMVKTQTP 114 (160)
T ss_dssp ECCCTTTC-CCEEEET---T--EEEECCEEETTEECCCEESSC
T ss_pred CCCCCCCC-CEEEEeC---C--eEEECCCCCCcccCcccCCCC
Confidence 45899996 6666432 2 3779885 4688765433
No 152
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=36.65 E-value=7.3 Score=28.31 Aligned_cols=17 Identities=29% Similarity=0.880 Sum_probs=15.7
Q ss_pred ccccccCCCccCCCCCC
Q 046997 761 ACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 761 ~c~~c~~~g~~~~~~~~ 777 (807)
-|..|.-+||++.+|+.
T Consensus 22 YCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccccccCcccccCCc
Confidence 49999999999999986
No 153
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=35.66 E-value=19 Score=44.68 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=45.9
Q ss_pred eeeeeeeEeecCccCCCCCCCHHHHHHHHH-hCCCCCccchHHHHHhhcccceEEE
Q 046997 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMD-KAGIGTDATMHDHIKKLLDRFYAIK 537 (807)
Q Consensus 483 ~~~~~~~~i~e~~T~PP~~~Tea~Li~~Me-~~GIGTpATra~iI~~L~~R~Yv~~ 537 (807)
.+.+.+++.++++..||++||-++|.+.+- +.|++..-|. .|.+.|++.|||.-
T Consensus 755 ~~~V~~v~~k~~~~~pp~pf~~~~Lq~~a~~~~g~s~~~tm-~iaQ~LYe~g~iTY 809 (1054)
T 1gku_B 755 DLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTM-QIAQELFENGLITY 809 (1054)
T ss_dssp EEEEEEEEEEEEEECCCCCBCHHHHHHHHHHTSCCCHHHHH-HHHHHHHHTTSBBC
T ss_pred EEEEEEEEeeEEEecCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCceee
Confidence 467778888899999999999999999985 5699777765 68999999999963
No 154
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=35.57 E-value=21 Score=30.22 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=19.1
Q ss_pred ccccCCCCCcceEEEecCCCCceeeccCCCCCCcce
Q 046997 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAV 670 (807)
Q Consensus 635 ~~~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~ 670 (807)
..+||.| |++++.+.. .| -|.|. .|.+.+
T Consensus 27 ~y~Cp~C-G~~~v~r~a-tG--iW~C~---~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNC-GEDRVDRQG-TG--IWQCS---YCDYKF 55 (83)
T ss_dssp CEECSSS-CCEEEEEEE-TT--EEEET---TTCCEE
T ss_pred cCcCCCC-CCcceeccC-CC--eEECC---CCCCEe
Confidence 4579999 567766554 34 37884 587764
No 155
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=35.35 E-value=26 Score=24.69 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=19.8
Q ss_pred ccCCCCCcceEEEecCCCCceeeccCCCCCCccee
Q 046997 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVW 671 (807)
Q Consensus 637 ~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~ 671 (807)
.||.|+..+-.+.+ +++.+|+.|.. |.....
T Consensus 2 lC~~C~~peT~l~~-~~~~~~l~C~a---CG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIK-EGRVHLLKCMA---CGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEE-ETTEEEEEEET---TTEEEE
T ss_pred CCcCCCCCCcEEEE-eCCcEEEEhhc---CCCccc
Confidence 59999644444433 34667888864 876544
No 156
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=35.02 E-value=18 Score=36.16 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=34.7
Q ss_pred hCCCCCccchHHHHHhhcccceEEEc---CCceeeechhHHHHHhhc
Q 046997 513 KAGIGTDATMHDHIKKLLDRFYAIKD---ANTRFAPTNIGEALVMGY 556 (807)
Q Consensus 513 ~~GIGTpATra~iI~~L~~R~Yv~~~---~~~~l~pT~~G~~li~~l 556 (807)
..|| |++|-..+|+.|.+.+|+.+. .++.+.+|+.|+.++...
T Consensus 36 ~L~i-sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 36 MLGI-SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp HHTS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHCC-CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 3455 788899999999999999986 134689999999987644
No 157
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=34.01 E-value=11 Score=34.85 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC------CceeeechhHHHHHhhcc
Q 046997 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA------NTRFAPTNIGEALVMGYD 557 (807)
Q Consensus 505 a~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~------~~~l~pT~~G~~li~~l~ 557 (807)
++|-..|. || +++|-..++..|.+.|+|++.. ...+.+|++|+.|+..+.
T Consensus 43 ~eL~~~l~--gI-s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~ 98 (131)
T 4a5n_A 43 NEFRRICP--SI-TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVL 98 (131)
T ss_dssp HHHHHHCT--TS-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHH
T ss_pred HHHHHHhc--cc-CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHH
Confidence 34444432 44 6678999999999999998742 124789999999886554
No 158
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=33.72 E-value=9.3 Score=32.67 Aligned_cols=50 Identities=30% Similarity=0.640 Sum_probs=30.6
Q ss_pred cccccCCCCCcceEEEecCCCCceeeccC--CCCCCcceecCCCccccccccCccCCCCC
Q 046997 634 VVRQCGICQESNMVLKKSRDGNLMVGCLA--FPQCRNAVWLPGSVSEAAVTTNTCNSCTP 691 (807)
Q Consensus 634 ~~~~CP~C~g~~lv~r~~k~G~~f~gCs~--yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~ 691 (807)
....|-.| |..+-+. -.|..|++|.. ||-|+--+-.+. ..-...||+|+.
T Consensus 15 ~~qiCqiC-GD~VG~~--~~Ge~FVAC~eC~FPvCrpCyEYEr-----keG~q~CpqCkt 66 (93)
T 1weo_A 15 DGQFCEIC-GDQIGLT--VEGDLFVACNECGFPACRPCYEYER-----REGTQNCPQCKT 66 (93)
T ss_dssp SSCBCSSS-CCBCCBC--SSSSBCCSCSSSCCCCCHHHHHHHH-----HTSCSSCTTTCC
T ss_pred CCCccccc-cCccccC--CCCCEEEeeeccCChhhHHHHHHHH-----hccCccccccCC
Confidence 45689999 4554333 46778899964 455553333221 123567999984
No 159
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=33.48 E-value=1.1e+02 Score=26.40 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcCeEEEeecCChhhhHHHHHHHHHhhhcCCCCeEEEEEecccCHHHHHHHHHcCCCCCcchHHHHHH
Q 046997 102 KDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181 (807)
Q Consensus 102 ~~~~~~lk~~~~~~d~IiiAtD~DREGE~I~~ei~~~~~~~~~~~~v~R~~~s~lt~~~I~~A~~nl~~~~~~l~~a~~a 181 (807)
.++.+.|++ .++..||+|.|++.. +-.+|..+|...+ .|+.. -.|..++=.|+-.-...--.+.++++|
T Consensus 24 ~~v~kai~~--gka~lViiA~D~~~~---~~~~i~~~c~~~~--ip~~~----~~s~~eLG~a~Gk~~~~~vai~d~g~a 92 (101)
T 3on1_A 24 EQVVKAVQN--GQVTLVILSSDAGIH---TKKKLLDKCGSYQ--IPVKV----VGNRQMLGRAIGKHERVVIGVKDAGFS 92 (101)
T ss_dssp HHHHHHHHT--TCCSEEEEETTSCHH---HHHHHHHHHHHHT--CCEEE----ESCHHHHHHHTTSSCCSEEEECCHHHH
T ss_pred HHHHHHHHc--CCCcEEEEeCCCCHH---HHHHHHHHHHHcC--CCEEE----eCCHHHHHHHhCCcCeEEEEEECccHH
Confidence 444445543 467899999999985 4567777777654 35542 378999999986531111345677777
Q ss_pred HHHHhH
Q 046997 182 RQEIDL 187 (807)
Q Consensus 182 R~~~D~ 187 (807)
+.+...
T Consensus 93 ~~i~~~ 98 (101)
T 3on1_A 93 RKLAAL 98 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 160
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=33.25 E-value=16 Score=28.40 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=17.7
Q ss_pred ccCccCCCCCCceEEEEeeccCccCCCCCccCccccCCCCChhH
Q 046997 682 TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725 (807)
Q Consensus 682 t~~~CP~Cg~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~~~~ 725 (807)
.-..||+||.+.++. ..+ ..+.|. .|.++.
T Consensus 17 ~~~fCPkCG~~~~ma--~~~-----------dr~~C~-kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLA--EHA-----------DRYSCG-RCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCE--ECS-----------SEEECT-TTCCCE
T ss_pred ccccCcCCCCceeEe--ccC-----------CEEECC-CCCCEE
Confidence 356799999644332 111 136698 887763
No 161
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=31.82 E-value=32 Score=29.87 Aligned_cols=55 Identities=15% Similarity=0.026 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEE----cCCceeeechhHHHHHhhc
Q 046997 498 PPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK----DANTRFAPTNIGEALVMGY 556 (807)
Q Consensus 498 PP~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~----~~~~~l~pT~~G~~li~~l 556 (807)
|-...+.+.|-+.|.= ..+|-...+..|.++|||.+ ++...+.+|+.|+++++.+
T Consensus 33 ~g~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~~~ 91 (96)
T 2obp_A 33 GATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQL 91 (96)
T ss_dssp TCCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHHHh
Confidence 3344566777666532 34677788999999999987 2233489999999988654
No 162
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=31.62 E-value=14 Score=41.08 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcC----C--ceeeechhHHHHHhhcc
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA----N--TRFAPTNIGEALVMGYD 557 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~----~--~~l~pT~~G~~li~~l~ 557 (807)
.|..+|-..| ++ +++|...+|++|.++|||++.. + ..+.+|++|+.+++.+.
T Consensus 421 ~~~~~l~~~~---~~-~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~ 478 (487)
T 1hsj_A 421 ISSKEIAKCS---EF-KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLI 478 (487)
T ss_dssp EEHHHHHHSS---CC-CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHH
T ss_pred cCHHHHHHHH---CC-CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 3445554443 33 5789999999999999997631 1 24899999999886553
No 163
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=31.38 E-value=43 Score=26.65 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=27.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceeccCC
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYPRT 343 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPRT 343 (807)
.+.++.+|+|...+.++.+.|-+.|+|..+++
T Consensus 29 ~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 29 FQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEecCCC
Confidence 34566799999999999999999999987654
No 164
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=31.33 E-value=40 Score=28.50 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhH
Q 046997 500 PLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549 (807)
Q Consensus 500 ~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G 549 (807)
...|-++|-+.+ || +++|-..||+.|.+.|||.... ..+.+|+.|
T Consensus 42 ~~~~~~eLa~~l---~i-s~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g 86 (96)
T 1y0u_A 42 KGRSEEEIMQTL---SL-SKKQLDYHLKVLEAGFCIERVG-ERWVVTDAG 86 (96)
T ss_dssp TTCCHHHHHHHH---TC-CHHHHHHHHHHHHHTTSEEEET-TEEEECTTT
T ss_pred CCCCHHHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEEC-CEEEECCCc
No 165
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=30.39 E-value=70 Score=33.72 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=11.3
Q ss_pred HHHHcCCCChHHHHH
Q 046997 577 KEVSVGNKSKADVLA 591 (807)
Q Consensus 577 ~~I~~G~~~~~~~l~ 591 (807)
..|-.|+++.+.|+.
T Consensus 216 ~~vl~g~i~p~~lv~ 230 (309)
T 1pqv_S 216 HKIANGDITPEFLAT 230 (309)
T ss_pred HHHHcCCCCHHHHhc
Confidence 466788888888765
No 166
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=30.17 E-value=59 Score=33.10 Aligned_cols=49 Identities=14% Similarity=0.364 Sum_probs=24.0
Q ss_pred cccCCCCCcceEEEecCCCCceee-ccCCCCCCcceecCCCccccccccCccCCCCC
Q 046997 636 RQCGICQESNMVLKKSRDGNLMVG-CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTP 691 (807)
Q Consensus 636 ~~CP~C~g~~lv~r~~k~G~~f~g-Cs~yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~ 691 (807)
.+||.|+|.-.+......|.+|.. =+..|.|+-.=. .......|+.|+.
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~-------~i~~~~~C~~C~G 104 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGD-------IIDPKDRCKSCNG 104 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSS-------CCCTTSBCSSSTT
T ss_pred ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCE-------EeccCCCCcccCC
Confidence 689999765544443334542211 011245653210 0112567999974
No 167
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=29.49 E-value=63 Score=27.19 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCceec
Q 046997 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISY 340 (807)
Q Consensus 304 pf~l~~Lq~~ask~~g~s~~~tl~iaQ~LYE~g~ISY 340 (807)
+.+..+|.+..++.++++..-+-.+.++|-++|||.-
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEE
Confidence 4567777777688899999999999999999999976
No 168
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=29.15 E-value=2.6e+02 Score=30.28 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHh------CCCCCccchHH-HHHhhcccceEEE------cCCceeeechhHHHHHhhccccCccccCch
Q 046997 501 LLSEADLLSCMDK------AGIGTDATMHD-HIKKLLDRFYAIK------DANTRFAPTNIGEALVMGYDDMGYELWKPN 567 (807)
Q Consensus 501 ~~Tea~Li~~Me~------~GIGTpATra~-iI~~L~~R~Yv~~------~~~~~l~pT~~G~~li~~l~~~~~~l~~p~ 567 (807)
-|+|++|+.+..- ..=+|.+.||. .|+.|++..++.+ +++..+.+|++|..+.+-|-.. -++..-.
T Consensus 46 e~~E~~L~d~Fr~Vs~~f~q~~et~~~RANNaIndlV~QRLLsRf~se~~dg~~iYRLT~La~gi~dyy~rq-refs~l~ 124 (440)
T 3euh_A 46 EMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQ-REFSTLR 124 (440)
T ss_dssp -EEHHHHHHHHHHHHHHTCCCSTTHHHHHHHHHHHHHHTTSEEEEECTTSTTSEEEEECHHHHHHHHHTTSC-CCCCHHH
T ss_pred ccChHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHhcccccccccceeeecHhhhhhhHHHHhh-HHHhHHH
Confidence 4678999998762 34578888987 6888998888865 3455689999999999877431 1333322
Q ss_pred h-------hHHHHHHHHHHHcCC
Q 046997 568 L-------RSMMESDMKEVSVGN 583 (807)
Q Consensus 568 ~-------Ta~~E~~L~~I~~G~ 583 (807)
+ ..++...++.+++|.
T Consensus 125 LS~qls~va~EL~~a~~Aaee~~ 147 (440)
T 3euh_A 125 LSMQLSIVAGELKRAADAAEEGG 147 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 345556666667663
No 169
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=29.10 E-value=39 Score=28.25 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC---ceeeechhHHH
Q 046997 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN---TRFAPTNIGEA 551 (807)
Q Consensus 502 ~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~---~~l~pT~~G~~ 551 (807)
.|-.+|-+.+ || +++|-..+++.|.+.|||....+ ..+.+|+.|..
T Consensus 39 ~s~~ela~~l---~i-s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~ 87 (99)
T 3cuo_A 39 TSAGELTRIT---GL-SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVN 87 (99)
T ss_dssp EEHHHHHHHH---CC-CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHH
T ss_pred cCHHHHHHHH---Cc-CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHH
Confidence 4555555544 67 78899999999999999976321 23678888753
No 170
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=28.77 E-value=64 Score=26.22 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCceeccC
Q 046997 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342 (807)
Q Consensus 304 pf~l~~Lq~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPR 342 (807)
|.+..+|...++...++++.-+..+..+|-++|||+.-+
T Consensus 23 ~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 23 SINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp SEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 457788888888766799999999999999999999765
No 171
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.74 E-value=54 Score=24.86 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=21.7
Q ss_pred ccCccCCCCCCceEEEEeeccCccCCCCCccCccccCCCCCh
Q 046997 682 TTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDE 723 (807)
Q Consensus 682 t~~~CP~Cg~~~l~~~~~k~~~g~~~~~~~~~~~~C~~~C~~ 723 (807)
....||+||....+-.+...|...-+ + ..++.|. +|..
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~--m-T~Fy~C~-~Cg~ 45 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEP--M-TTFVVCN-ECGN 45 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSC--C-EEEEEES-SSCC
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCC--c-eEEEEcC-CCCC
Confidence 45689999976665545444443221 1 1336687 7754
No 172
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=28.12 E-value=55 Score=27.53 Aligned_cols=31 Identities=3% Similarity=-0.005 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhcCceecc
Q 046997 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341 (807)
Q Consensus 311 q~~ask~~g~s~~~tl~iaQ~LYE~g~ISYP 341 (807)
|.+.++.++++..-+..+..+|-++|||..|
T Consensus 33 ~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~ 63 (95)
T 2qvo_A 33 IQYIASKVNSPHSYVWLIIKKFEEAKMVECE 63 (95)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCcCccCC
Confidence 4667778999999999999999999999444
No 173
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.02 E-value=36 Score=26.53 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=22.4
Q ss_pred cccccCCCCCcceEEEecCCCCceeeccCCCCCCcceecC
Q 046997 634 VVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673 (807)
Q Consensus 634 ~~~~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~~p 673 (807)
....||.| ++.|.... | .+-|.+ |.|+..++.-
T Consensus 9 ~iL~CP~c-~~~L~~~~---~--~L~C~~-~~c~~~YPI~ 41 (56)
T 2kpi_A 9 EILACPAC-HAPLEERD---A--ELICTG-QDCGLAYPVR 41 (56)
T ss_dssp TSCCCSSS-CSCEEEET---T--EEEECS-SSCCCEEEEE
T ss_pred hheeCCCC-CCcceecC---C--EEEcCC-cCCCcEEeeE
Confidence 35579999 56776554 3 367875 5798877753
No 174
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=26.16 E-value=51 Score=33.61 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHh
Q 046997 499 PPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVM 554 (807)
Q Consensus 499 P~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~ 554 (807)
+...+-++||..|+-.||.-++.|.. +..|.++|.++..+.. +.+|+.|+....
T Consensus 18 g~~i~~~~Li~l~~~~Gi~e~avRtA-lsRL~~~G~L~~~~~G-Y~LT~~~~~~~~ 71 (247)
T 3kfw_X 18 PAWATASELIQLTADFGIKETTLRVA-LTRMVGAGDLVRSADG-YRLSDRLLARQR 71 (247)
T ss_dssp TSCBCHHHHHHHHTTTTCCHHHHHHH-HHHHHHTTSEEEETTE-EEECHHHHHHHH
T ss_pred CCcccHHHHHHHHHHcCCChHHHHHH-HHHHHHcCCeeccCCc-eeeCHHHHHHHH
Confidence 67888999999999999999999976 5799999999876543 789999987553
No 175
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=26.06 E-value=50 Score=28.54 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhcCceecc
Q 046997 313 RASRYFRMSSEHTMKVAEDLYQAGFISYP 341 (807)
Q Consensus 313 ~ask~~g~s~~~tl~iaQ~LYE~g~ISYP 341 (807)
+.+..+|+|..-+-++.+.|.+.|+|.+-
T Consensus 38 eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 38 EIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45667999999999999999999999875
No 176
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=25.59 E-value=15 Score=33.32 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=8.8
Q ss_pred ccCCCCCcceEEE
Q 046997 637 QCGICQESNMVLK 649 (807)
Q Consensus 637 ~CP~C~g~~lv~r 649 (807)
+||.|+++.++..
T Consensus 4 ~Cp~Cg~~~~~~~ 16 (133)
T 3o9x_A 4 KCPVCHQGEMVSG 16 (133)
T ss_dssp BCTTTSSSBEEEE
T ss_pred CCCcCCCCceeec
Confidence 6999965556433
No 177
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=25.35 E-value=15 Score=26.84 Aligned_cols=17 Identities=29% Similarity=0.880 Sum_probs=15.7
Q ss_pred ccccccCCCccCCCCCC
Q 046997 761 ACIYCQQMGHSSSDCPS 777 (807)
Q Consensus 761 ~c~~c~~~g~~~~~~~~ 777 (807)
-|..|--+||++..|+.
T Consensus 22 YCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccceecccccccCCc
Confidence 49999999999999986
No 178
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=25.22 E-value=22 Score=32.48 Aligned_cols=7 Identities=29% Similarity=1.108 Sum_probs=4.7
Q ss_pred ccCCCCC
Q 046997 685 TCNSCTP 691 (807)
Q Consensus 685 ~CP~Cg~ 691 (807)
.||+|++
T Consensus 29 ~CP~C~s 35 (138)
T 2akl_A 29 PCPQCNS 35 (138)
T ss_dssp CCTTTCC
T ss_pred CCCCCCC
Confidence 4777775
No 179
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=25.02 E-value=29 Score=35.11 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=6.4
Q ss_pred CccCCCCCCceE
Q 046997 684 NTCNSCTPGPVY 695 (807)
Q Consensus 684 ~~CP~Cg~~~l~ 695 (807)
..||.||..++.
T Consensus 35 ~yCPnCG~~~l~ 46 (257)
T 4esj_A 35 SYCPNCGNNPLN 46 (257)
T ss_dssp CCCTTTCCSSCE
T ss_pred CcCCCCCChhhh
Confidence 456666653343
No 180
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=25.02 E-value=55 Score=30.30 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=9.4
Q ss_pred cCccCCCCCCceE
Q 046997 683 TNTCNSCTPGPVY 695 (807)
Q Consensus 683 ~~~CP~Cg~~~l~ 695 (807)
...||.||+..+.
T Consensus 107 ~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 107 FLACPKCGSHDFE 119 (139)
T ss_dssp GCSCSSSSCCCEE
T ss_pred CCcCccccCCccE
Confidence 5679999974443
No 181
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=24.88 E-value=59 Score=26.51 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=25.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceecc
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYP 341 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYP 341 (807)
.+.++.+|+|...+-...+.|-+.|+|..-
T Consensus 18 ~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 18 AEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 344556899999999999999999999853
No 182
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=24.81 E-value=2.9e+02 Score=24.67 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=54.7
Q ss_pred eecCccCCCCCC-CHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhh
Q 046997 491 LDSGVTRPPPLL-SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569 (807)
Q Consensus 491 i~e~~T~PP~~~-Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~T 569 (807)
|..+.-+|-.++ ||.+| ++..|+ ...|--..+..|...|||+...++....++....-+.... + -..++
T Consensus 17 I~~g~l~~G~~LPse~~L---a~~~gv-Sr~tVr~Al~~L~~~Gli~~~~g~G~~V~~~~~~~~~~~~----~--~~~~R 86 (129)
T 2ek5_A 17 IVDGTLSIDQRVPSTNEL---AAFHRI-NPATARNGLTLLVEAGILYKKRGIGMFVSAQAPALIRERR----D--AAFAA 86 (129)
T ss_dssp HHTTSSCTTSCBCCHHHH---HHHTTC-CHHHHHHHHHHHHTTTSEEEETTTEEEECTTHHHHHHHHH----H--HHHHH
T ss_pred HHhCCCCCCCcCcCHHHH---HHHHCc-CHHHHHHHHHHHHHCCcEEEecCCEEEEecCchHhhhhHh----H--HHHHH
Confidence 344555555566 77776 455688 4567777899999999998866554455555433221000 0 12466
Q ss_pred HHHHHHHHHHHcCCCChHHH
Q 046997 570 SMMESDMKEVSVGNKSKADV 589 (807)
Q Consensus 570 a~~E~~L~~I~~G~~~~~~~ 589 (807)
..+|......+.-..+.+++
T Consensus 87 ~~lE~~~~~~a~~~~~~~~l 106 (129)
T 2ek5_A 87 TYVAPLIDESIHLGFTRARI 106 (129)
T ss_dssp HHTHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHH
Confidence 67777777776666666543
No 183
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=24.68 E-value=81 Score=31.72 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=32.5
Q ss_pred HHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHH
Q 046997 511 MDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALV 553 (807)
Q Consensus 511 Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li 553 (807)
-+..|| ..+|-..|+.+|.+.|||.....+.+.+++....|-
T Consensus 30 a~~~gl-~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~l~ 71 (249)
T 1mkm_A 30 AEKFNM-SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYG 71 (249)
T ss_dssp HHHTTC-CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHH
T ss_pred HHHHCc-CHHHHHHHHHHHHHCCcEEECCCCcEEECHHHHHHH
Confidence 345578 778899999999999999986334578888766654
No 184
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.95 E-value=62 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceecc
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYP 341 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYP 341 (807)
.+.++.+|+|...+-....+|-+.|+|.+-
T Consensus 34 ~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 34 AQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 567888999999999999999999999883
No 185
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=23.91 E-value=63 Score=28.82 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=24.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhcCceec
Q 046997 313 RASRYFRMSSEHTMKVAEDLYQAGFISY 340 (807)
Q Consensus 313 ~ask~~g~s~~~tl~iaQ~LYE~g~ISY 340 (807)
+.++.+|+|...+..+.+.|.++|||.-
T Consensus 47 eLa~~l~~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 47 ALSKSLKLDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3466689999999999999999999975
No 186
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=23.83 E-value=42 Score=33.77 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=32.7
Q ss_pred HHHhCCCCCccchHHHHHhhcccceEEEcCC-ceeeechhHHHHH
Q 046997 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDAN-TRFAPTNIGEALV 553 (807)
Q Consensus 510 ~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~-~~l~pT~~G~~li 553 (807)
.-+..|| ..+|-..++.+|.+.|||..+.. +.+.+++....|-
T Consensus 27 la~~~gl-~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 27 IAQLVGL-PRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHTTS-CHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHHH
T ss_pred HHHHHCc-CHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHHH
Confidence 3445688 78899999999999999998642 4577877766543
No 187
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.81 E-value=99 Score=29.28 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=22.6
Q ss_pred cccCCCCCcceEEEe-cCCCCceeeccCCCCCCcceecC
Q 046997 636 RQCGICQESNMVLKK-SRDGNLMVGCLAFPQCRNAVWLP 673 (807)
Q Consensus 636 ~~CP~C~g~~lv~r~-~k~G~~f~gCs~yP~C~~~~~~p 673 (807)
+.||.|+..+..+.+ .+.+.+|+.|.. |...-+.+
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~A---CGa~~~V~ 139 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKA---CGYRGMLD 139 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSS---SCCEEECC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccC---CCCCCccc
Confidence 579999655555554 345567788864 77665543
No 188
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=23.42 E-value=1.7e+02 Score=31.22 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=34.0
Q ss_pred hhcCeEEEeecCChhhhHHHHHHHHHhhh-cCCCCeEEEEEec-ccCHHHHH
Q 046997 113 RRCQWLVLWLDCDREGENIAFEVIEVCRA-VNCHLVLRRARFS-ALIDREIH 162 (807)
Q Consensus 113 ~~~d~IiiAtD~DREGE~I~~ei~~~~~~-~~~~~~v~R~~~s-~lt~~~I~ 162 (807)
+..+.||++.|.|.-|..-++.+++.+.. ......++.+.+. ..++.++.
T Consensus 204 r~~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP~gkDpdd~l 255 (338)
T 1dd9_A 204 RATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLV 255 (338)
T ss_dssp HHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEECTTCCHHHHH
T ss_pred hcCCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCChHHHH
Confidence 34689999999999999999999987322 1222357666554 34444443
No 189
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=22.96 E-value=1.3e+02 Score=26.86 Aligned_cols=88 Identities=13% Similarity=0.000 Sum_probs=55.0
Q ss_pred eecCccCCCCCC-CHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhh
Q 046997 491 LDSGVTRPPPLL-SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569 (807)
Q Consensus 491 i~e~~T~PP~~~-Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~T 569 (807)
|..+.-+|-.++ |+.+|-. ..|+. ..|--..+..|...|+|+...++....++.... +. ++....++
T Consensus 24 I~~g~~~~G~~lPse~~La~---~~~vS-r~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~~~-~~-------~~~~~~~r 91 (126)
T 3by6_A 24 VATDVLSANDQLPSVRETAL---QEKIN-PNTVAKAYKELEAQKVIRTIPGKGTFITGNTAS-VK-------NSNQNRLL 91 (126)
T ss_dssp HHTTSSCTTCEECCHHHHHH---HHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECSCHHH-HH-------HHHHHHHH
T ss_pred HHhCCCCCCCcCcCHHHHHH---HHCcC-HHHHHHHHHHHHHCCCEEEecCCeEEEccCchh-hh-------HhHHHHHH
Confidence 445555666666 7777644 45774 567778999999999998765544344442222 21 11123566
Q ss_pred HHHHHHHHHHHcCCCChHHHH
Q 046997 570 SMMESDMKEVSVGNKSKADVL 590 (807)
Q Consensus 570 a~~E~~L~~I~~G~~~~~~~l 590 (807)
..+|......+.-..+.+++.
T Consensus 92 ~~le~~~~~~~~~~~~~~~l~ 112 (126)
T 3by6_A 92 ADLSQVIAELIKSGVKGERIK 112 (126)
T ss_dssp HHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHH
Confidence 778888777776667766544
No 190
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=22.89 E-value=79 Score=26.93 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhcCcee
Q 046997 311 EKRASRYFRMSSEHTMKVAEDLYQAGFIS 339 (807)
Q Consensus 311 q~~ask~~g~s~~~tl~iaQ~LYE~g~IS 339 (807)
|++..++++++...+-.+.++|=++|||.
T Consensus 39 qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 39 SRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 68889999999999999999999999997
No 191
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.74 E-value=53 Score=30.76 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=30.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCcee-c-cCCCCccc
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFIS-Y-PRTETDSF 348 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~IS-Y-PRTds~~l 348 (807)
.+.++.+|+|+..+..-.++|-+.|+|. | ..-|-..+
T Consensus 21 ~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~l 59 (162)
T 3i4p_A 21 ADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKV 59 (162)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHh
Confidence 6677889999999999999999999998 4 34454443
No 192
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=22.68 E-value=73 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceeccCC
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYPRT 343 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPRT 343 (807)
.+.++.+|+|..-+-.+.+.|-+.|||..-+.
T Consensus 40 ~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 40 EELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 44556789999999999999999999987543
No 193
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=22.62 E-value=64 Score=31.82 Aligned_cols=41 Identities=7% Similarity=0.125 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhcCceeccCCCCcccCCc
Q 046997 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSG 351 (807)
Q Consensus 311 q~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPRTds~~l~~~ 351 (807)
+.+.++.+++|+.-+-.+.++|-++|||+|-+.-.-.|++.
T Consensus 23 ~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~ 63 (214)
T 3hrs_A 23 NKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDL 63 (214)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCEEEecCCCeEECHH
Confidence 35677789999999999999999999999977544556654
No 194
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.61 E-value=53 Score=31.02 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=17.7
Q ss_pred ceeeccCCCCCCcceecCCCccccccccCccCCCCCCceE
Q 046997 656 LMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVY 695 (807)
Q Consensus 656 ~f~gCs~yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~~~l~ 695 (807)
+-|-|. .|...+... .....||.||+ ++.
T Consensus 131 ~~y~C~---~Cg~~~~~~-------~~~~~Cp~CG~-~~~ 159 (165)
T 2lcq_A 131 WRYVCI---GCGRKFSTL-------PPGGVCPDCGS-KVK 159 (165)
T ss_dssp CCEEES---SSCCEESSC-------CGGGBCTTTCC-BEE
T ss_pred EEEECC---CCCCcccCC-------CCCCcCCCCCC-cce
Confidence 447785 488765432 12347999996 443
No 195
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=22.51 E-value=26 Score=30.99 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=29.4
Q ss_pred hCCCCCccchHHHHHhhcccceEEEc--CC-ceeeechhHHHHH
Q 046997 513 KAGIGTDATMHDHIKKLLDRFYAIKD--AN-TRFAPTNIGEALV 553 (807)
Q Consensus 513 ~~GIGTpATra~iI~~L~~R~Yv~~~--~~-~~l~pT~~G~~li 553 (807)
..|| +++|-..|+..|.+.|+|... ++ ..+.+|+.|...+
T Consensus 40 ~l~i-s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l 82 (118)
T 3f6o_A 40 PFDM-ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAV 82 (118)
T ss_dssp TCCS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHH
T ss_pred HhCc-CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHH
Confidence 3466 577889999999999999653 22 2377888887654
No 196
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=22.44 E-value=1.4e+02 Score=31.61 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=34.3
Q ss_pred hcCeEEEeecCChhhhHHHHHHHHHhhhcCCCCeEEEEEec-ccCHHHHHH
Q 046997 114 RCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFS-ALIDREIHQ 163 (807)
Q Consensus 114 ~~d~IiiAtD~DREGE~I~~ei~~~~~~~~~~~~v~R~~~s-~lt~~~I~~ 163 (807)
-++.||++.|.|.-|..-++.+++.+...+. .++.+.+. ..++.++..
T Consensus 194 ~~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~--~v~v~~lP~gkDpdd~l~ 242 (329)
T 4edg_A 194 LTSNITLMFDGDFAGSEATLKTGQHLLQQGL--NVFVIQLPSGMDPDEYIG 242 (329)
T ss_dssp HCSEEEECCCSSHHHHHHHHHHHHHHHHTTC--EEEECCCCTTCCHHHHHH
T ss_pred cCCeEEEEeCCCHHHHHHHHHHHHHHHhcCC--eEEEEECCCCCCHHHHHH
Confidence 3689999999999999999999998876543 45544332 445555443
No 197
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.23 E-value=42 Score=32.19 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=15.6
Q ss_pred eeeccCCCCCCcceecCCCccccccccCccCCCCC
Q 046997 657 MVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTP 691 (807)
Q Consensus 657 f~gCs~yP~C~~~~~~p~~~~~~~~t~~~CP~Cg~ 691 (807)
+|-|++ |.+++.. . ....||.||.
T Consensus 138 ~~~C~~---CG~i~~~-~-------~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPI---CGYTAVD-E-------APEYCPVCGA 161 (170)
T ss_dssp EEECTT---TCCEEES-C-------CCSBCTTTCC
T ss_pred eeEeCC---CCCeeCC-C-------CCCCCCCCCC
Confidence 477854 8887652 1 1238999994
No 198
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=22.12 E-value=66 Score=29.14 Aligned_cols=82 Identities=7% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHhCCCC-CccchHHHHHhhcccceEEEcCCce-----eeechhHH------HHHh---------hccc
Q 046997 500 PLLSEADLLSCMDKAGIG-TDATMHDHIKKLLDRFYAIKDANTR-----FAPTNIGE------ALVM---------GYDD 558 (807)
Q Consensus 500 ~~~Tea~Li~~Me~~GIG-TpATra~iI~~L~~R~Yv~~~~~~~-----l~pT~~G~------~li~---------~l~~ 558 (807)
...|..+|...|... -+ .++|-..+|+.|.++|||.+....+ +..|+.|. .+++ .+..
T Consensus 23 ~~~t~~el~~~l~~~-~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T 2g9w_A 23 EPQTVRQVHEALSAR-RDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALV 101 (138)
T ss_dssp SCEEHHHHHHHHTTT-CCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHHHHHHHHHHHTTSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcc-CCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHHHHHHHHHHHHHHhhCCCHHHHHH
Q ss_pred cCccccCchhhHHHHHHHHHHHcC
Q 046997 559 MGYELWKPNLRSMMESDMKEVSVG 582 (807)
Q Consensus 559 ~~~~l~~p~~Ta~~E~~L~~I~~G 582 (807)
.-..-.+++=.+.+...|+++.+.
T Consensus 102 ~~~~~ls~eE~~~L~~lL~~~~~~ 125 (138)
T 2g9w_A 102 HFVERVGADEADALRRALAELEAG 125 (138)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhc
No 199
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=21.92 E-value=52 Score=33.96 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCC---ceeeechhHHHHHh
Q 046997 499 PPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN---TRFAPTNIGEALVM 554 (807)
Q Consensus 499 P~~~Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~---~~l~pT~~G~~li~ 554 (807)
+....-++||..|+..||.-.|.|.. +..|.++|.|+..+. ..+.+|+.|+..++
T Consensus 40 g~~i~~~~Li~l~~~~Gi~~~avR~A-l~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~ 97 (266)
T 3l09_A 40 VIEVSGVALSSFVERMGLQPQAMRVA-LHRLKRDGWVESRRLGRVGFHRLSDSALTQTR 97 (266)
T ss_dssp CCCEEHHHHHHHHHHTTCCHHHHHHH-HHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcccHHHHHHHHHHcCCCchHHHHH-HHHHHHCCCeeeeecCCcceEEECHHHHHHHH
Confidence 34567799999999999999999976 579999999976432 24789999998763
No 200
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.80 E-value=81 Score=27.86 Aligned_cols=31 Identities=10% Similarity=0.017 Sum_probs=26.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceeccC
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPR 342 (807)
.+.++.+|++...+..+.++|-++|||+.-+
T Consensus 54 ~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 54 YQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 4556779999999999999999999998643
No 201
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.57 E-value=64 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.616 Sum_probs=17.9
Q ss_pred ccccCCCCCcceEEEecCCCCceeeccCCCCCCccee
Q 046997 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVW 671 (807)
Q Consensus 635 ~~~CP~C~g~~lv~r~~k~G~~f~gCs~yP~C~~~~~ 671 (807)
...||.|++..|+.-. ..|. +-|. .|...+.
T Consensus 5 ~~~CP~C~~~~l~~d~-~~ge--lvC~---~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDP-ERGE--IVCA---KCGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEET-TTTE--EEES---SSCCBCC
T ss_pred cEeCcCCCCcceEEcC-CCCe--EECc---ccCCccc
Confidence 4579999432665432 2343 6774 4777654
No 202
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=21.52 E-value=61 Score=28.08 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhC-CC-CCccchHHHHHhhcccceEEEcC---CceeeechhHHHHHhhc
Q 046997 502 LSEADLLSCMDKA-GI-GTDATMHDHIKKLLDRFYAIKDA---NTRFAPTNIGEALVMGY 556 (807)
Q Consensus 502 ~Tea~Li~~Me~~-GI-GTpATra~iI~~L~~R~Yv~~~~---~~~l~pT~~G~~li~~l 556 (807)
++-.+|++.+++. ++ =.+.|--.++..|.+.|||+... .+.+..|+.|+..++.+
T Consensus 25 ~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~ 84 (99)
T 2co5_A 25 LEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEEL 84 (99)
T ss_dssp EEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHH
Confidence 3445777777653 21 24678888999999999998632 34589999999876543
No 203
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.50 E-value=2.2e+02 Score=25.21 Aligned_cols=91 Identities=12% Similarity=-0.020 Sum_probs=58.3
Q ss_pred eecCccCCCCCC-CHHHHHHHHHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHHHHhhccccCccccCchhh
Q 046997 491 LDSGVTRPPPLL-SEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569 (807)
Q Consensus 491 i~e~~T~PP~~~-Tea~Li~~Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~li~~l~~~~~~l~~p~~T 569 (807)
|..+.-+|-.++ |+.+|- +..|+. ..|-...+..|.+.|||+...++....++.-.. +..+ ....+.
T Consensus 26 I~~g~~~~g~~Lps~~~La---~~~~vS-r~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~~~-~~~~-------~~~~~~ 93 (125)
T 3neu_A 26 MITGEWKGEDKLPSVREMG---VKLAVN-PNTVSRAYQELERAGYIYAKRGMGSFVTSDKAL-FDQL-------KKELAD 93 (125)
T ss_dssp HHTTSSCTTCBCCCHHHHH---HHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECCCHHH-HHHH-------HHHHHH
T ss_pred HHhCCCCCCCCCCCHHHHH---HHHCcC-HHHHHHHHHHHHHCCeEEEecCCEEEEecCchh-hHHH-------HHHHHH
Confidence 444555555566 577664 455886 588889999999999998765444334443222 2111 112246
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHH
Q 046997 570 SMMESDMKEVSVGNKSKADVLANC 593 (807)
Q Consensus 570 a~~E~~L~~I~~G~~~~~~~l~~~ 593 (807)
..+|.....++....+.+++..-+
T Consensus 94 ~~le~~~~~~~~~g~~~~ei~~l~ 117 (125)
T 3neu_A 94 AITERFLEEAKSIGLDDQTAIELL 117 (125)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 778888888888888888776543
No 204
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=21.45 E-value=1.2e+02 Score=28.41 Aligned_cols=53 Identities=32% Similarity=0.323 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHhCC-CCCccchHHHHHhhcccceEEEc--------CC---ceeeechhHHHHHhhcc
Q 046997 501 LLSEADLLSCMDKAG-IGTDATMHDHIKKLLDRFYAIKD--------AN---TRFAPTNIGEALVMGYD 557 (807)
Q Consensus 501 ~~Tea~Li~~Me~~G-IGTpATra~iI~~L~~R~Yv~~~--------~~---~~l~pT~~G~~li~~l~ 557 (807)
..|-.+|... .+ | +.||--.|++.|.+-|+|+.. .+ +.+.+|+.|+.++..+.
T Consensus 45 ~~ta~eL~~~---l~~l-S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~y~ 109 (151)
T 3u1d_A 45 VLSVEELLYR---NPDE-TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRAVS 109 (151)
T ss_dssp CBCHHHHHHH---CTTS-CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHHTT
T ss_pred CCCHHHHHHh---cCCC-CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHHhH
Confidence 3555665432 23 3 689999999999999999842 11 25899999999886653
No 205
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=21.21 E-value=75 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhcCceeccC
Q 046997 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342 (807)
Q Consensus 311 q~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPR 342 (807)
|.+.++.+++++.-+-.+.++|-++|||..-+
T Consensus 56 ~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 87 (127)
T 2frh_A 56 LKDIINHLNYKQPQVVKAVKILSQEDYFDKKR 87 (127)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 46677789999999999999999999999843
No 206
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.67 E-value=80 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhcCceecc
Q 046997 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYP 341 (807)
Q Consensus 311 q~~ask~~g~s~~~tl~iaQ~LYE~g~ISYP 341 (807)
+.+.++.+|+|+..+..+.++|-++|||.--
T Consensus 46 ~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 46 QDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3555667899999999999999999999863
No 207
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=20.64 E-value=89 Score=27.51 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=26.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceecc
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYP 341 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYP 341 (807)
.+.++.+|++...+..+.++|-++|||.--
T Consensus 56 ~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 56 NQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 455667999999999999999999999864
No 208
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=20.34 E-value=76 Score=30.25 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhcCceeccC
Q 046997 311 EKRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342 (807)
Q Consensus 311 q~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPR 342 (807)
|++.+..+|+|+..+..+..+|-+.|+|++-|
T Consensus 166 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 166 HHELAALAGTSRETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 56777789999999999999999999999865
No 209
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=20.29 E-value=87 Score=28.09 Aligned_cols=76 Identities=8% Similarity=-0.027 Sum_probs=48.0
Q ss_pred HHhCCCCCccchHHHHHhhcccceEEEcCCceeeechhHHH-HHhhccccCccccCchhhHHHHHHHHHHHcCCCChHHH
Q 046997 511 MDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEA-LVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV 589 (807)
Q Consensus 511 Me~~GIGTpATra~iI~~L~~R~Yv~~~~~~~l~pT~~G~~-li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~G~~~~~~~ 589 (807)
.+..|+. ..|--..+..|.+.|||+...++....++.... +.+.+. ...++..+|..+.....-..+.+++
T Consensus 42 a~~~~vS-r~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~~~~~~~~~~-------~~~~~~~le~~~~~~~~~~~~~~~l 113 (126)
T 3ic7_A 42 ASIVEVN-ANTVMRSYEYLQSQEVIYNKRGIGFFVASGAKMLIHSLRK-------EQFLKEEVGSFFRQLYTLGISIKEI 113 (126)
T ss_dssp TTCC-CC-SGGGHHHHHHHHTTTSEEEETTTEEEECTTHHHHHHHHHH-------TTCCCCCSHHHHHHHHHTTCCHHHH
T ss_pred HHHHCcC-HHHHHHHHHHHHHCCcEEEEcCCccEEccCcHHHHHHHHH-------HHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4566884 567778899999999998766555555665543 332221 1134455677777777777888776
Q ss_pred HHHHH
Q 046997 590 LANCL 594 (807)
Q Consensus 590 l~~~~ 594 (807)
..-+.
T Consensus 114 ~~l~~ 118 (126)
T 3ic7_A 114 EKMYY 118 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 210
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=20.23 E-value=90 Score=25.86 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceeccC
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPR 342 (807)
.+.++.+|+|..-+-...+.|-+.|+|..-+
T Consensus 42 ~ela~~l~is~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 42 GELTRITGLSASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4456678999999999999999999998755
No 211
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=20.22 E-value=1e+02 Score=27.36 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=27.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhcCceeccC
Q 046997 312 KRASRYFRMSSEHTMKVAEDLYQAGFISYPR 342 (807)
Q Consensus 312 ~~ask~~g~s~~~tl~iaQ~LYE~g~ISYPR 342 (807)
.+.++.+|++..-+..+.+.|-++|||+.-+
T Consensus 45 ~ela~~l~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 45 SDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5556678999999999999999999999754
No 212
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=20.15 E-value=60 Score=39.95 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=13.7
Q ss_pred chhhHHHHHHHHHHHcC
Q 046997 566 PNLRSMMESDMKEVSVG 582 (807)
Q Consensus 566 p~~Ta~~E~~L~~I~~G 582 (807)
+.+...+|.+|+-|.+-
T Consensus 437 ~~v~~RLe~EL~vI~~~ 453 (1041)
T 3f2b_A 437 KLVEERLEKELKSIIGH 453 (1041)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 45788999999999863
Done!