Citrus Sinensis ID: 046997

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------
MAGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRNARANGMNPQSGMTAEVLFSHHFL
ccccccccEEEEEEcccHHHHHHHHHHccccccEECcccccccccCEEEEECcccccEEEEEEEEEECccccccHHcccccccccccccccccCEEccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEECccccEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEEEECccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccCEEEEEEEEccEEEEEEEEEEEcccccccccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHccccEEEcccccECccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccEEccccccccccEEccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
*****RP**VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAG***************PPIHPTKFS*****WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTG**************************CIYC***********************************LFSHHFL
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MAGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRNARANGMNPQSGMTAEVLFSHHFL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
DNA topoisomerase 3 Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.probableQ8T2T7

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
5.-.-.-Isomerases.probable
5.99.-.-Other isomerases.probable
5.99.1.-Sole sub-subclass for isomerases that do not belong in the other subclasses.probable
5.99.1.2DNA topoisomerase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2GAI, chain A
Confidence level:very confident
Coverage over the Query: 10-30,59-202,215-376,394-664
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View the model in PyMOL
Template: 1I7D, chain A
Confidence level:very confident
Coverage over the Query: 10-616,632-639
View the alignment between query and template
View the model in PyMOL
Template: 3H0G, chain I
Confidence level:probable
Coverage over the Query: 635-724
View the alignment between query and template
View the model in PyMOL
Template: 1U6P, chain A
Confidence level:probable
Coverage over the Query: 754-780
View the alignment between query and template
View the model in PyMOL