BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047000
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 255 bits (651), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/243 (53%), Positives = 167/243 (68%), Gaps = 19/243 (7%)
Query: 7 DESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPM 66
+E+ +A QL +ASVLPM +++ + L + EIIAKAGPGA++S EIA+QLP T N DAP+
Sbjct: 17 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTT-NPDAPV 75
Query: 67 MLDRMLRLLASHSAVECSIDDADDS--QRLYGLNDVSNYFVPNKDGSYRS---------- 114
MLDRMLRLLA + + CS+ D QRLYGL V+ Y V N+DG S
Sbjct: 76 MLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKV 135
Query: 115 ------QLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKILEAY 168
LK+A+ +GG+PF++ +G AFEY G DPRFN+VFN M +++ + ++KILE Y
Sbjct: 136 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 169 KGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQN 228
GFE ++ LVDVGG G + I SKYP IKGINFDLPHVI+ AP YPGVEHVGGDMF +
Sbjct: 196 TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS 255
Query: 229 VPK 231
+PK
Sbjct: 256 IPK 258
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 230 bits (586), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 114/249 (45%), Positives = 162/249 (65%), Gaps = 19/249 (7%)
Query: 1 MANEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATK 60
MA +++ +A QL ++SVLPM ++ I LG+ EI+ AG G L+ +E+AA+LP+
Sbjct: 12 MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAA 70
Query: 61 NKDAPMMLDRMLRLLASHSAVECSIDDADDSQ--RLYGLNDVSNYFVPNKDGSYRSQL-- 116
N +AP M+DR+LRLLAS++ V C +++ D + R YG V + PN+DG + L
Sbjct: 71 NPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALAL 130
Query: 117 --------------KEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQ 162
K+A+ +GG+PF++ +G AFEY G DPRFN VFN M N++ ++ +
Sbjct: 131 MNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITK 190
Query: 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVG 222
K+LE Y GFE + LVDVGG +G T+ AI + YP IKG+NFDLPHVI AP++PGV HVG
Sbjct: 191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVG 250
Query: 223 GDMFQNVPK 231
GDMF+ VP
Sbjct: 251 GDMFKEVPS 259
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 156/244 (63%), Gaps = 20/244 (8%)
Query: 7 DESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKA-GPGAKLSASEIAAQLPATKNKDAP 65
+E+ +A QL +A+VLPMA++A I L V EI+AK+ P +S +EIAAQLP T N +AP
Sbjct: 19 EEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT-NPEAP 77
Query: 66 MMLDRMLRLLASHSAVECSIDD--ADDSQRLYGLNDVSNYFVPNKDGSYRSQ-------- 115
+MLDR+LRLLAS+S V ++ + + +RLYGL V + N+DG +
Sbjct: 78 VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDK 137
Query: 116 --------LKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKILEA 167
LK+AI EGG+PF++ +G + F+Y G D R N+VFN M + + + ++KILE
Sbjct: 138 VLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEM 197
Query: 168 YKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQ 227
Y GFE + +VDVGG G I +KYP I INFDLPHVIQ AP + GVEH+GGDMF
Sbjct: 198 YNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFD 257
Query: 228 NVPK 231
VPK
Sbjct: 258 GVPK 261
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 150/251 (59%), Gaps = 21/251 (8%)
Query: 2 ANEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGP-GAKLSASEIAAQLPA-T 59
+ + D + A L T V P + A I L +FEIIAKA P GA +S SEIA++LPA T
Sbjct: 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPAST 76
Query: 60 KNKDAPMMLDRMLRLLASHSAVECSIDDADD--SQRLYGLNDVSNYFVPNKDGSYRSQL- 116
++ D P LDRMLRLLAS+S + + +D ++R+YGL+ V Y VP++ Y +
Sbjct: 77 QHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFT 136
Query: 117 ---------------KEAITEGGVP-FDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLV 160
KEA+ + + F VHG +E+ G D + N++FN +M +
Sbjct: 137 TFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATE 196
Query: 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEH 220
++++LE Y GFE I LVDVGG G L+ I SKYP IKGINFDLP VI++AP G+EH
Sbjct: 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEH 256
Query: 221 VGGDMFQNVPK 231
VGGDMF +VP+
Sbjct: 257 VGGDMFASVPQ 267
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/251 (42%), Positives = 144/251 (57%), Gaps = 21/251 (8%)
Query: 2 ANEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGP-GAKLSASEIAAQLPA-T 59
+ + D + A L T V P + A I L +FEIIAKA P GA S SEIA++LPA T
Sbjct: 17 SEQTEDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPAST 76
Query: 60 KNKDAPMMLDRMLRLLASHSAVECSIDDADD--SQRLYGLNDVSNYFVPNKDGSYRSQL- 116
++ D P LDR LRLLAS+S + + +D ++R+YGL+ V Y VP++ Y +
Sbjct: 77 QHSDLPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFT 136
Query: 117 ---------------KEAITEGGVP-FDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLV 160
KEA+ + + F VHG +E+ G D + N++FN + +
Sbjct: 137 TFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATE 196
Query: 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEH 220
++ LE Y GFE I LVDVGG G L+ I SKYP IKGINFDLP VI++AP G+EH
Sbjct: 197 XKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEH 256
Query: 221 VGGDMFQNVPK 231
VGGD F +VP+
Sbjct: 257 VGGDXFASVPQ 267
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 24/230 (10%)
Query: 17 VTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLA 76
+ A + M+++ + + + II G LS Q+P++K + + R++R LA
Sbjct: 24 IYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN----VRRLMRYLA 79
Query: 77 SHSAVECSIDDADDSQRLYGLNDVSNYFV----------------PNKDGSYRSQLKEAI 120
+ E I ++S Y L S V P GSY K
Sbjct: 80 HNGFFEI-ITKEEES---YALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIY 135
Query: 121 TEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDV 180
E F G+ +++ +P +N FN AM + + L+ + + F+ ++ +VDV
Sbjct: 136 EEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDV 195
Query: 181 GGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQNVP 230
GG G T K I +P +K I FD P V+++ + +VGGDMF ++P
Sbjct: 196 GGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP 245
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 23/243 (9%)
Query: 6 RDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAP 65
+ ++ Y N + A V M+++ I + + II G LS Q+P+TK +
Sbjct: 15 KAQALLYKN--MYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN-- 70
Query: 66 MMLDRMLRLLASHSAVECSID-DADDSQRLYGLNDVSNYFV----------------PNK 108
+ R++R LA + E + + ++ + Y L S V P
Sbjct: 71 --VQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVLDPTL 128
Query: 109 DGSYRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKILEAY 168
S+ + K E F G +E+ +P +N ++N A+ + + ++ + +
Sbjct: 129 STSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCN 188
Query: 169 KGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQN 228
FE ++ +VDVGG G T K I +P + + FD P V+++ + +VGGDMF +
Sbjct: 189 LVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFIS 248
Query: 229 VPK 231
VPK
Sbjct: 249 VPK 251
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%)
Query: 106 PNKDGSYRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKIL 165
P GSY K E F G+ +++ +P +N FN A + + L+ +
Sbjct: 121 PTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALR 180
Query: 166 EAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDM 225
+ F+ ++ +VDVGG G T K I +P +K I FD P V+++ + +VGGD
Sbjct: 181 DCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDX 240
Query: 226 FQNVP 230
F ++P
Sbjct: 241 FTSIP 245
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 115 QLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKILEAYKGFEHI 174
QL ++ G FD +GT ++ DP+ E+FN A + + ++ AY F
Sbjct: 145 QLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGA 203
Query: 175 QQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY-------PGVEHVGGDMFQ 227
VD+GG G+ A+ +P ++G + P V + A + E + GD F+
Sbjct: 204 ATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFE 263
Query: 228 NVP 230
+P
Sbjct: 264 TIP 266
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 38/257 (14%)
Query: 5 GRDESFAYANQL-----VTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQL--- 56
G +ES Y Q+ V V MA+++ + LG+ + I G ++ SE+A+ L
Sbjct: 1 GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKLH 58
Query: 57 PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRL----YGLNDVSNYFVPNKDGSY 112
P+ N +L R LRLL + +I + Y L S + K
Sbjct: 59 PSKVN-----ILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCL 113
Query: 113 RSQLKEAITEGGVP-----------------FDRVHGTHAFEYPGLDPRFN--EVFNIAM 153
S +K A+ + F+ G +++ D + +F AM
Sbjct: 114 SSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAM 173
Query: 154 YNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAP 213
+ + + + E + FE ++ LVDVGG G K I +PH+K FD P V+ +
Sbjct: 174 ASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLT 233
Query: 214 KYPGVEHVGGDMFQNVP 230
+ VGGDMF+++P
Sbjct: 234 GNENLNFVGGDMFKSIP 250
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 33/236 (13%)
Query: 21 VLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQL---PATKNKDAPMMLDRMLRLLAS 77
V MA+++ + LG+ + I G ++ SE+A+ L P+ N +L R LRLL
Sbjct: 18 VSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKLHPSKVN-----ILHRFLRLLTH 70
Query: 78 HSAVECSIDDADDSQRL----YGLNDVSNYFVPNKDGSYRSQLKEAITEGGVP------- 126
+ +I + Y L S + K S +K A+ +
Sbjct: 71 NGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKK 130
Query: 127 ----------FDRVHGTHAFEYPGLDPRFN--EVFNIAMYNYTNLVIQKILEAYKGFEHI 174
F+ G +++ D + +F AM + + + + E + FE +
Sbjct: 131 WFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGL 190
Query: 175 QQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQNVP 230
+ LVDVGG G K I +PH+K FD P V+ + + VGGDMF+++P
Sbjct: 191 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 246
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 33/236 (13%)
Query: 21 VLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQL---PATKNKDAPMMLDRMLRLLAS 77
V MA+++ + LG+ + I G ++ SE+A+ L P+ N +L R LRLL
Sbjct: 21 VSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKLHPSKVN-----ILHRFLRLLTH 73
Query: 78 HSAVECSIDDADDSQRL----YGLNDVSNYFVPNKDGSYRSQLKEAITEGGVP------- 126
+ +I + Y L S + K S +K A+ +
Sbjct: 74 NGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKK 133
Query: 127 ----------FDRVHGTHAFEYPGLDPRFN--EVFNIAMYNYTNLVIQKILEAYKGFEHI 174
F+ G +++ D + +F AM + + + + E + FE +
Sbjct: 134 WFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGL 193
Query: 175 QQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQNVP 230
+ LVDVGG G K I +PH+K FD P V+ + + VGGDMF+++P
Sbjct: 194 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 249
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 36/199 (18%)
Query: 56 LPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFVPNKDGSYRSQ 115
L A DA + R++RLL + + D++ Y N +++ + + +GS+R
Sbjct: 47 LAAAVGSDAER-IHRLMRLLVAFEIFQ------GDTRDGYA-NTPTSHLLRDVEGSFRDM 98
Query: 116 L--------------KEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVI 161
+ EA+ G F+ G + Y P F +AM +NL
Sbjct: 99 VLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAF 157
Query: 162 QKI--LEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPG-- 217
+I L ++G + VDVGG G KAI P +G+ D + A
Sbjct: 158 HEIPRLLDFRG----RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSL 213
Query: 218 -----VEHVGGDMFQNVPK 231
V VGGDM Q VP
Sbjct: 214 LAGERVSLVGGDMLQEVPS 232
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 131 HGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKA 190
+G +E D + F+ M +L + +AY + ++ ++DVGG G L A
Sbjct: 141 YGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAA 199
Query: 191 ITSKYPHIKGINFDLPHVIQHAPKY-------PGVEHVGGDMFQNVP 230
I + PH++G +L + A + V GD F+ +P
Sbjct: 200 IALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLP 246
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 138 YPGLDPRFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPH 197
YP + N F + IQ +LE K + +++++DVGG +G+ A+ +P
Sbjct: 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPE 214
Query: 198 IKGINFDLPHVI 209
+ +LP I
Sbjct: 215 LDSTILNLPGAI 226
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 142 DPRFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGI 201
D R + FN A + + + E F + ++D+ G G L + ++P + G
Sbjct: 149 DTRARDAFNDAXVRLSQPXVDVVSE-LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQ 207
Query: 202 NFDLPHVIQHAPKYPGVEHVGG 223
+DLP A K +GG
Sbjct: 208 IWDLPTTRDAARKTIHAHDLGG 229
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 18 TASVLPMAMQAVIGLGVFEIIAKAG-PGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLA 76
++ L + + +IG + EI+ A PG +A + ++D P+
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPI---------- 50
Query: 77 SHSAVECSIDDADDSQ-RLYGLNDVSNYF 104
+ V+C I D DDSQ +L L DV++ F
Sbjct: 51 --NYVQCDISDPDDSQAKLSPLTDVTHVF 77
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 82 ECSIDDADDSQRLYGLNDVSNYFVPNKDGSYRSQLKEAITEGGVPFDRVHGTHAFEYPGL 141
E DD +QR + +D++ V D S+ ++L +AI G ++ ++G +E
Sbjct: 97 ELLADDHPAAQRAW--HDLTQA-VARADISF-TRLPDAIRTGRPTYESIYGKPFYEDLAG 152
Query: 142 DPRFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGI 201
P F+ + ++ AY + +++ ++DVGG G AI + PH+
Sbjct: 153 RPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSAT 211
Query: 202 NFDLPHVIQHAPKY-------PGVEHVGGDMFQNVPK 231
++ + A Y V+ V GD F+ +P+
Sbjct: 212 VLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR 248
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 177 LVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY------PGVEHVGGDMFQN 228
+ D+GG G K S YP K FD+P V+ A ++ ++ GD F++
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD 240
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2
Length = 229
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 160 VIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-----PHIKGINFDLPHVIQH 211
+IQKIL+A+ F+ + DV G +G+ L I + P + F++ +I+
Sbjct: 100 IIQKILDAWMDFDAVVATPDVMGAVGSKLGRILAPRGLLPNPKAGTVGFNIGEIIRE 156
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 121 TEGGVP-FDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKI 164
T G+P F HG E GL P+F+ F A T++ + ++
Sbjct: 57 TASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQL 101
>pdb|1KMP|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
Complexed With Ferric Citrate
Length = 774
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 43 PGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDA----DDSQRLYGLN 98
P A LS S AAQ+ AP LD+ L A+HS S+D + S L+G
Sbjct: 23 PLAGLSFSAFAAQV-----NIAPGSLDKALNQYAAHSGFTLSVDASLTRGKQSNGLHGDY 77
Query: 99 DVSNYFVPNKDGS 111
DV + DGS
Sbjct: 78 DVESGLQQLLDGS 90
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 121 TEGGVP-FDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKI 164
T G+P F HG E GL P+F+ F A T++ + ++
Sbjct: 57 TASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQL 101
>pdb|1S5B|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation Form 3
pdb|1S5C|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation, Crystal
Form 1
pdb|1S5D|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation, Crystal
Form 2
Length = 240
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 94 LYGLNDVSNYFVPNKDGSYRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAM 153
++ +NDV + P+ D +E GG+P+ +++G + + LD + +
Sbjct: 94 MFNVNDVLGAYSPHPD------EQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRD 147
Query: 154 YNYTNLVIQKILEAY 168
Y+NL I + Y
Sbjct: 148 RYYSNLDIAPAADGY 162
>pdb|1S5E|A Chain A, Cholera Holotoxin, Crystal Form 1
pdb|1S5E|B Chain B, Cholera Holotoxin, Crystal Form 1
pdb|1S5F|A Chain A, Cholera Holotoxin, Crystal Form 2
Length = 240
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 94 LYGLNDVSNYFVPNKDGSYRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAM 153
++ +NDV + P+ D +E GG+P+ +++G + + LD + +
Sbjct: 94 MFNVNDVLGAYSPHPD------EQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRD 147
Query: 154 YNYTNLVIQKILEAY 168
Y+NL I + Y
Sbjct: 148 RYYSNLDIAPAADGY 162
>pdb|1XTC|A Chain A, Cholera Toxin
Length = 194
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 94 LYGLNDVSNYFVPNKDGSYRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAM 153
++ +NDV + P+ D +E GG+P+ +++G + + LD + +
Sbjct: 94 MFNVNDVLGAYSPHPD------EQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRD 147
Query: 154 YNYTNLVIQKILEAY 168
Y+NL I + Y
Sbjct: 148 RYYSNLDIAPAADGY 162
>pdb|1KMO|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
Length = 774
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 43 PGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDA----DDSQRLYGLN 98
P A LS S AAQ+ AP LD+ L A+HS S+D + S L+G
Sbjct: 23 PLAGLSFSAFAAQV-----NIAPGSLDKALNQYAAHSGFTLSVDASLTRGKQSNGLHGDY 77
Query: 99 DVSNYFVPNKDGS 111
DV + DGS
Sbjct: 78 DVESGLQQLLDGS 90
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 87 DADDSQRLYGLNDVSNYFVPNKDGSYRSQLKEAITE 122
D DDS LY +ND S F + G Y SQLK I E
Sbjct: 1396 DLDDSLPLY-INDESVIFQRIEVGHYESQLKHLIEE 1430
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 87 DADDSQRLYGLNDVSNYFVPNKDGSYRSQLKEAITE 122
D DDS LY +ND S F + G Y SQLK I E
Sbjct: 1396 DLDDSLPLY-INDESVIFQRIEVGHYESQLKHLIEE 1430
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,276,418
Number of Sequences: 62578
Number of extensions: 303132
Number of successful extensions: 740
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 38
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)