Query 047000
Match_columns 231
No_of_seqs 150 out of 1074
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 4.3E-41 1.5E-45 294.0 16.9 218 1-230 1-242 (353)
2 3reo_A (ISO)eugenol O-methyltr 100.0 2.9E-38 9.8E-43 277.5 20.7 228 3-231 15-261 (368)
3 3p9c_A Caffeic acid O-methyltr 100.0 4.3E-38 1.5E-42 276.0 21.4 226 4-231 15-259 (364)
4 3lst_A CALO1 methyltransferase 100.0 2.8E-36 9.6E-41 262.7 18.6 209 5-230 18-246 (348)
5 3gwz_A MMCR; methyltransferase 100.0 7.6E-36 2.6E-40 262.0 14.3 209 6-230 35-266 (369)
6 1fp2_A Isoflavone O-methyltran 100.0 2.9E-35 9.8E-40 256.6 17.3 220 2-231 9-246 (352)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 3.9E-35 1.3E-39 256.3 17.9 222 3-230 4-250 (358)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 2.7E-34 9.2E-39 252.3 22.0 226 4-231 17-267 (372)
9 3i53_A O-methyltransferase; CO 100.0 1.9E-35 6.4E-40 255.7 13.5 204 11-230 7-233 (332)
10 2ip2_A Probable phenazine-spec 100.0 6.6E-35 2.3E-39 252.2 15.3 210 1-230 1-231 (334)
11 3dp7_A SAM-dependent methyltra 100.0 2E-34 7E-39 252.4 11.1 207 4-228 10-241 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 4.2E-32 1.4E-36 237.8 15.0 209 7-231 14-247 (374)
13 1x19_A CRTF-related protein; m 100.0 2.6E-31 8.8E-36 232.1 18.8 201 1-228 22-252 (359)
14 1tw3_A COMT, carminomycin 4-O- 100.0 2.5E-31 8.6E-36 231.9 16.8 207 9-231 19-248 (360)
15 2r3s_A Uncharacterized protein 100.0 6.7E-30 2.3E-34 220.5 16.3 195 11-228 8-227 (335)
16 3mcz_A O-methyltransferase; ad 100.0 4.1E-30 1.4E-34 223.6 14.9 202 3-229 18-242 (352)
17 2qm3_A Predicted methyltransfe 99.2 3.1E-11 1.1E-15 105.6 10.0 160 33-230 47-235 (373)
18 3e05_A Precorrin-6Y C5,15-meth 98.3 1.1E-06 3.6E-11 69.7 7.0 67 163-230 31-104 (204)
19 1ve3_A Hypothetical protein PH 98.3 2.4E-07 8.3E-12 74.2 2.8 62 161-227 29-96 (227)
20 3dtn_A Putative methyltransfer 98.3 2.1E-06 7.3E-11 69.2 7.4 67 162-228 33-104 (234)
21 3kr9_A SAM-dependent methyltra 98.2 6.7E-07 2.3E-11 72.7 2.8 58 173-230 15-80 (225)
22 1yb2_A Hypothetical protein TA 98.2 1.6E-06 5.6E-11 72.1 5.1 67 163-230 101-176 (275)
23 2qe6_A Uncharacterized protein 98.1 3.3E-06 1.1E-10 70.5 6.5 55 173-227 77-139 (274)
24 4gek_A TRNA (CMO5U34)-methyltr 98.1 2.6E-06 8.7E-11 70.7 5.6 56 172-227 69-134 (261)
25 3mb5_A SAM-dependent methyltra 98.1 3.1E-06 1.1E-10 69.2 5.9 68 162-230 83-159 (255)
26 1yzh_A TRNA (guanine-N(7)-)-me 98.1 2.6E-06 8.9E-11 68.0 5.1 55 173-227 41-102 (214)
27 3mq2_A 16S rRNA methyltransfer 98.1 4.2E-06 1.4E-10 66.8 6.3 57 171-227 25-92 (218)
28 3g07_A 7SK snRNA methylphospha 98.1 2.9E-06 1E-10 71.3 5.4 41 173-213 46-87 (292)
29 3vc1_A Geranyl diphosphate 2-C 98.1 6.3E-06 2.1E-10 69.7 7.1 78 148-227 93-178 (312)
30 1nv8_A HEMK protein; class I a 98.1 1.5E-06 5.3E-11 72.9 3.1 56 173-229 123-186 (284)
31 3lec_A NADB-rossmann superfami 98.1 1.6E-06 5.3E-11 70.7 2.9 59 172-230 20-86 (230)
32 3ou2_A SAM-dependent methyltra 98.1 1.2E-05 4E-10 63.7 7.9 65 162-228 35-102 (218)
33 3dlc_A Putative S-adenosyl-L-m 98.1 2.7E-06 9.2E-11 67.4 4.0 63 162-227 34-104 (219)
34 1nkv_A Hypothetical protein YJ 98.0 8.5E-06 2.9E-10 66.4 6.8 65 162-228 26-98 (256)
35 3gnl_A Uncharacterized protein 98.0 1.9E-06 6.7E-11 70.8 2.8 59 172-230 20-86 (244)
36 2fca_A TRNA (guanine-N(7)-)-me 98.0 2.7E-06 9.4E-11 68.2 3.7 55 173-227 38-99 (213)
37 2b3t_A Protein methyltransfera 98.0 6.2E-06 2.1E-10 68.6 5.8 65 163-229 101-172 (276)
38 3ege_A Putative methyltransfer 98.0 1.5E-05 5.2E-10 65.5 7.9 63 162-227 24-87 (261)
39 2plw_A Ribosomal RNA methyltra 98.0 1.3E-05 4.4E-10 63.0 7.0 62 163-228 12-75 (201)
40 3hm2_A Precorrin-6Y C5,15-meth 98.0 4.1E-06 1.4E-10 64.4 4.0 65 163-229 16-88 (178)
41 2p35_A Trans-aconitate 2-methy 98.0 5.6E-06 1.9E-10 67.5 5.0 64 163-227 24-89 (259)
42 3f4k_A Putative methyltransfer 98.0 9.3E-06 3.2E-10 66.2 6.2 64 163-227 36-107 (257)
43 4dcm_A Ribosomal RNA large sub 98.0 8.1E-06 2.8E-10 71.2 6.2 67 163-230 213-289 (375)
44 3g5t_A Trans-aconitate 3-methy 98.0 1.4E-05 4.9E-10 66.9 7.3 56 172-227 35-100 (299)
45 2vdv_E TRNA (guanine-N(7)-)-me 98.0 8.4E-06 2.9E-10 66.6 5.6 57 172-228 48-119 (246)
46 4dzr_A Protein-(glutamine-N5) 98.0 2.8E-06 9.6E-11 67.1 2.5 65 163-227 20-90 (215)
47 3dh0_A SAM dependent methyltra 98.0 5.5E-06 1.9E-10 65.9 4.2 65 162-227 27-99 (219)
48 3ckk_A TRNA (guanine-N(7)-)-me 97.9 7.8E-06 2.7E-10 66.7 4.9 56 172-227 45-113 (235)
49 3uwp_A Histone-lysine N-methyl 97.9 1.3E-05 4.5E-10 70.6 6.6 65 162-227 163-243 (438)
50 3bus_A REBM, methyltransferase 97.9 1.7E-05 5.7E-10 65.4 6.9 64 162-227 51-122 (273)
51 1jsx_A Glucose-inhibited divis 97.9 7.3E-06 2.5E-10 64.7 4.5 56 174-229 66-128 (207)
52 1pjz_A Thiopurine S-methyltran 97.9 1.3E-05 4.3E-10 63.7 5.8 60 166-228 16-94 (203)
53 3dxy_A TRNA (guanine-N(7)-)-me 97.9 6.3E-06 2.2E-10 66.4 4.0 54 173-226 34-94 (218)
54 3njr_A Precorrin-6Y methylase; 97.9 1.2E-05 4.2E-10 63.9 5.4 62 164-228 47-116 (204)
55 3p2e_A 16S rRNA methylase; met 97.9 1.3E-05 4.5E-10 64.8 5.6 56 172-227 23-89 (225)
56 3mgg_A Methyltransferase; NYSG 97.9 1.2E-05 3.9E-10 66.5 5.3 57 171-227 35-98 (276)
57 3ujc_A Phosphoethanolamine N-m 97.9 1.2E-05 4.2E-10 65.6 5.3 65 162-228 45-114 (266)
58 3hem_A Cyclopropane-fatty-acyl 97.9 1.2E-05 4E-10 67.6 5.3 63 163-227 63-133 (302)
59 2pwy_A TRNA (adenine-N(1)-)-me 97.9 1.8E-05 6.1E-10 64.5 6.2 65 163-228 87-160 (258)
60 1vl5_A Unknown conserved prote 97.9 1.1E-05 3.9E-10 66.0 5.0 64 161-227 26-96 (260)
61 3kkz_A Uncharacterized protein 97.9 1.3E-05 4.6E-10 65.9 5.4 63 164-227 37-107 (267)
62 1m6y_A S-adenosyl-methyltransf 97.9 1.5E-05 5E-10 67.6 5.5 63 163-226 17-85 (301)
63 3jwg_A HEN1, methyltransferase 97.9 8.5E-06 2.9E-10 64.9 3.9 55 173-227 29-95 (219)
64 2h00_A Methyltransferase 10 do 97.9 7.4E-06 2.5E-10 67.0 3.6 53 173-225 65-125 (254)
65 3gu3_A Methyltransferase; alph 97.9 1.3E-05 4.6E-10 66.8 5.1 57 171-227 20-83 (284)
66 3jwh_A HEN1; methyltransferase 97.9 9.9E-06 3.4E-10 64.6 4.1 55 173-227 29-95 (217)
67 2yxd_A Probable cobalt-precorr 97.9 5.8E-06 2E-10 63.5 2.5 62 164-228 27-95 (183)
68 1o54_A SAM-dependent O-methylt 97.8 1.5E-05 5.2E-10 66.1 5.3 68 162-230 102-178 (277)
69 3ntv_A MW1564 protein; rossman 97.8 5.5E-06 1.9E-10 67.1 2.5 57 173-229 71-135 (232)
70 2o57_A Putative sarcosine dime 97.8 1.8E-05 6.1E-10 66.1 5.7 64 162-227 68-143 (297)
71 3gjy_A Spermidine synthase; AP 97.8 1E-05 3.6E-10 68.9 4.1 53 175-227 91-150 (317)
72 3b3j_A Histone-arginine methyl 97.8 3.4E-05 1.2E-09 69.4 7.6 65 161-227 147-218 (480)
73 3m33_A Uncharacterized protein 97.8 1.5E-05 5.1E-10 64.2 4.7 57 172-230 47-105 (226)
74 3q87_B N6 adenine specific DNA 97.8 2.2E-05 7.7E-10 60.4 5.3 52 173-230 23-75 (170)
75 2esr_A Methyltransferase; stru 97.8 9E-06 3.1E-10 62.6 2.9 56 171-227 29-92 (177)
76 3pfg_A N-methyltransferase; N, 97.8 3.9E-05 1.3E-09 62.8 6.8 54 172-227 49-104 (263)
77 1dus_A MJ0882; hypothetical pr 97.8 3.3E-05 1.1E-09 59.7 5.9 65 163-230 43-116 (194)
78 2ozv_A Hypothetical protein AT 97.8 1.9E-05 6.6E-10 65.2 4.7 58 171-228 34-102 (260)
79 3bkw_A MLL3908 protein, S-aden 97.8 3.2E-05 1.1E-09 62.3 5.8 64 162-227 33-100 (243)
80 3adn_A Spermidine synthase; am 97.8 1.9E-05 6.5E-10 66.6 4.5 56 173-228 83-150 (294)
81 1fbn_A MJ fibrillarin homologu 97.8 5.7E-05 1.9E-09 60.9 7.2 57 171-227 72-133 (230)
82 1jg1_A PIMT;, protein-L-isoasp 97.7 1.8E-05 6.3E-10 64.0 4.0 66 163-230 82-154 (235)
83 3ggd_A SAM-dependent methyltra 97.7 4.2E-05 1.5E-09 61.9 6.1 55 171-227 54-112 (245)
84 3ftd_A Dimethyladenosine trans 97.7 6E-05 2E-09 62.0 7.0 64 162-227 21-87 (249)
85 3dou_A Ribosomal RNA large sub 97.7 4.6E-05 1.6E-09 60.0 6.1 61 162-228 14-74 (191)
86 3g5l_A Putative S-adenosylmeth 97.7 2.6E-05 9E-10 63.5 4.8 63 163-227 35-101 (253)
87 2nyu_A Putative ribosomal RNA 97.7 7.7E-05 2.6E-09 58.1 7.3 61 163-227 12-82 (196)
88 3dli_A Methyltransferase; PSI- 97.7 3.9E-05 1.3E-09 62.1 5.7 61 163-227 31-92 (240)
89 3cgg_A SAM-dependent methyltra 97.7 3.1E-05 1.1E-09 59.9 4.9 61 163-227 38-100 (195)
90 1kpg_A CFA synthase;, cyclopro 97.7 3.4E-05 1.1E-09 64.1 5.4 62 163-226 55-124 (287)
91 4fsd_A Arsenic methyltransfera 97.7 3E-05 1E-09 67.6 5.3 55 173-227 83-153 (383)
92 3bkx_A SAM-dependent methyltra 97.7 2.3E-05 7.7E-10 64.6 4.3 64 163-227 34-113 (275)
93 2ipx_A RRNA 2'-O-methyltransfe 97.7 3.1E-05 1.1E-09 62.5 5.0 58 171-228 75-138 (233)
94 3lbf_A Protein-L-isoaspartate 97.7 3.7E-05 1.3E-09 60.7 5.4 64 163-229 68-138 (210)
95 2pjd_A Ribosomal RNA small sub 97.7 3E-05 1E-09 66.6 5.1 66 162-228 186-257 (343)
96 3lpm_A Putative methyltransfer 97.7 2.7E-05 9.2E-10 64.0 4.5 57 171-228 46-111 (259)
97 2fhp_A Methylase, putative; al 97.7 2E-05 6.8E-10 60.9 3.6 56 171-227 42-105 (187)
98 2yxe_A Protein-L-isoaspartate 97.7 3.6E-05 1.2E-09 61.1 5.0 66 163-229 68-141 (215)
99 3tma_A Methyltransferase; thum 97.7 3.1E-05 1.1E-09 66.7 5.0 66 161-227 192-265 (354)
100 2gpy_A O-methyltransferase; st 97.7 1.5E-05 5.1E-10 64.3 2.8 56 173-228 54-117 (233)
101 3grz_A L11 mtase, ribosomal pr 97.7 5.1E-05 1.7E-09 59.8 5.8 57 172-229 59-122 (205)
102 3ocj_A Putative exported prote 97.7 8.6E-06 2.9E-10 68.6 1.3 58 171-228 116-182 (305)
103 4hg2_A Methyltransferase type 97.7 6.7E-05 2.3E-09 62.0 6.6 53 173-227 39-92 (257)
104 3ccf_A Cyclopropane-fatty-acyl 97.7 4.1E-05 1.4E-09 63.4 5.3 63 162-227 47-111 (279)
105 1xxl_A YCGJ protein; structura 97.7 3.8E-05 1.3E-09 62.2 5.0 63 162-227 11-80 (239)
106 1qam_A ERMC' methyltransferase 97.7 3.8E-05 1.3E-09 62.9 4.8 63 162-227 20-87 (244)
107 3orh_A Guanidinoacetate N-meth 97.7 1.2E-05 4.1E-10 65.4 1.8 52 172-224 59-116 (236)
108 2xvm_A Tellurite resistance pr 97.7 4.3E-05 1.5E-09 59.5 5.0 62 163-227 23-91 (199)
109 2fk8_A Methoxy mycolic acid sy 97.7 4E-05 1.4E-09 64.7 5.1 64 162-227 80-151 (318)
110 3duw_A OMT, O-methyltransferas 97.7 3E-05 1E-09 62.0 3.9 55 173-227 58-121 (223)
111 3g89_A Ribosomal RNA small sub 97.7 2.8E-05 9.5E-10 63.9 3.8 57 171-227 78-141 (249)
112 2bm8_A Cephalosporin hydroxyla 97.6 4E-05 1.4E-09 62.4 4.7 54 174-227 82-141 (236)
113 3fpf_A Mtnas, putative unchara 97.6 2.9E-05 1E-09 65.5 3.8 57 171-227 120-183 (298)
114 1nt2_A Fibrillarin-like PRE-rR 97.6 6.2E-05 2.1E-09 60.1 5.6 57 171-227 55-116 (210)
115 1xdz_A Methyltransferase GIDB; 97.6 1.7E-05 5.8E-10 64.5 2.2 57 171-227 68-131 (240)
116 1i9g_A Hypothetical protein RV 97.6 3.7E-05 1.3E-09 63.6 4.3 66 162-228 89-165 (280)
117 3a27_A TYW2, uncharacterized p 97.6 3.3E-05 1.1E-09 64.2 4.0 58 171-228 117-181 (272)
118 3tfw_A Putative O-methyltransf 97.6 3.3E-05 1.1E-09 63.2 3.9 56 172-227 62-126 (248)
119 3g2m_A PCZA361.24; SAM-depende 97.6 3.5E-05 1.2E-09 64.6 4.0 64 160-227 71-144 (299)
120 3eey_A Putative rRNA methylase 97.6 2.3E-05 8E-10 61.3 2.8 57 171-227 20-85 (197)
121 3bxo_A N,N-dimethyltransferase 97.6 3.8E-05 1.3E-09 61.7 4.0 54 172-227 39-94 (239)
122 3hnr_A Probable methyltransfer 97.6 4.4E-05 1.5E-09 60.6 4.3 63 163-228 36-101 (220)
123 3uzu_A Ribosomal RNA small sub 97.6 2.3E-05 7.8E-10 65.7 2.7 64 163-227 33-101 (279)
124 3c3p_A Methyltransferase; NP_9 97.6 1.3E-05 4.4E-10 63.6 1.1 55 173-227 56-119 (210)
125 4htf_A S-adenosylmethionine-de 97.6 4.1E-05 1.4E-09 63.5 4.1 62 163-228 60-129 (285)
126 1ej0_A FTSJ; methyltransferase 97.6 0.00014 4.7E-09 55.0 6.8 61 163-227 12-73 (180)
127 1o9g_A RRNA methyltransferase; 97.6 3.6E-05 1.2E-09 62.8 3.6 50 164-214 43-95 (250)
128 1g8a_A Fibrillarin-like PRE-rR 97.6 8.6E-05 2.9E-09 59.5 5.6 57 171-227 71-133 (227)
129 3u81_A Catechol O-methyltransf 97.6 1.5E-05 5.1E-10 63.9 0.9 55 173-227 58-121 (221)
130 2fyt_A Protein arginine N-meth 97.6 7E-05 2.4E-09 64.3 5.2 63 163-227 55-124 (340)
131 1xtp_A LMAJ004091AAA; SGPP, st 97.6 4.7E-05 1.6E-09 61.8 3.9 64 162-227 83-151 (254)
132 2frn_A Hypothetical protein PH 97.6 5.4E-05 1.8E-09 63.1 4.4 57 172-229 124-188 (278)
133 3tr6_A O-methyltransferase; ce 97.6 4.9E-05 1.7E-09 60.7 3.9 55 173-227 64-127 (225)
134 3lcc_A Putative methyl chlorid 97.6 4E-05 1.4E-09 61.7 3.4 53 175-229 68-128 (235)
135 3tqs_A Ribosomal RNA small sub 97.5 5.3E-05 1.8E-09 62.6 4.1 64 162-228 19-87 (255)
136 1l3i_A Precorrin-6Y methyltran 97.5 3.3E-05 1.1E-09 59.6 2.7 61 164-227 25-93 (192)
137 1iy9_A Spermidine synthase; ro 97.5 3.5E-05 1.2E-09 64.3 2.9 55 173-227 75-140 (275)
138 3mti_A RRNA methylase; SAM-dep 97.5 5.9E-05 2E-09 58.4 3.9 53 171-225 20-79 (185)
139 1wzn_A SAM-dependent methyltra 97.5 0.00012 4.1E-09 59.4 5.9 62 163-227 32-99 (252)
140 2p7i_A Hypothetical protein; p 97.5 4.9E-05 1.7E-09 61.1 3.4 54 173-228 42-98 (250)
141 3fut_A Dimethyladenosine trans 97.5 6.6E-05 2.3E-09 62.6 4.2 61 163-227 38-102 (271)
142 2yqz_A Hypothetical protein TT 97.5 0.00013 4.3E-09 59.4 5.8 55 171-227 37-97 (263)
143 1yub_A Ermam, rRNA methyltrans 97.5 5.3E-05 1.8E-09 61.9 3.4 63 162-227 19-86 (245)
144 3i9f_A Putative type 11 methyl 97.5 2.1E-05 7.1E-10 60.1 0.9 56 166-224 11-68 (170)
145 3ofk_A Nodulation protein S; N 97.5 8.2E-05 2.8E-09 58.9 4.4 59 167-228 46-109 (216)
146 3gru_A Dimethyladenosine trans 97.5 0.00014 4.7E-09 61.4 5.9 64 161-227 39-107 (295)
147 3l8d_A Methyltransferase; stru 97.5 0.00014 4.7E-09 58.5 5.7 53 173-227 53-109 (242)
148 1ne2_A Hypothetical protein TA 97.5 5.7E-05 2E-09 59.3 3.3 55 172-227 50-106 (200)
149 1dl5_A Protein-L-isoaspartate 97.5 0.0001 3.5E-09 62.5 5.0 65 163-228 66-138 (317)
150 2avd_A Catechol-O-methyltransf 97.5 3.8E-05 1.3E-09 61.5 2.2 56 172-227 68-132 (229)
151 2gb4_A Thiopurine S-methyltran 97.5 7.6E-05 2.6E-09 61.4 4.0 54 173-228 68-145 (252)
152 2b25_A Hypothetical protein; s 97.5 0.00016 5.6E-09 61.6 6.2 65 163-228 96-179 (336)
153 2pxx_A Uncharacterized protein 97.5 7.7E-05 2.6E-09 58.7 3.8 55 172-227 41-100 (215)
154 1vbf_A 231AA long hypothetical 97.5 0.00014 4.7E-09 58.3 5.4 63 163-228 61-128 (231)
155 1zq9_A Probable dimethyladenos 97.5 0.0001 3.5E-09 61.7 4.7 63 162-227 18-88 (285)
156 3e23_A Uncharacterized protein 97.5 7.4E-05 2.5E-09 59.1 3.6 55 171-227 41-96 (211)
157 3q7e_A Protein arginine N-meth 97.5 7.1E-05 2.4E-09 64.5 3.8 55 173-228 66-127 (349)
158 3h2b_A SAM-dependent methyltra 97.5 5.8E-05 2E-09 59.2 3.0 52 174-227 42-95 (203)
159 1g6q_1 HnRNP arginine N-methyl 97.4 7E-05 2.4E-09 63.9 3.4 55 173-228 38-99 (328)
160 1qyr_A KSGA, high level kasuga 97.4 0.00011 3.7E-09 60.6 4.5 63 162-227 11-78 (252)
161 2nxc_A L11 mtase, ribosomal pr 97.4 3.3E-05 1.1E-09 63.5 1.3 75 148-227 98-178 (254)
162 1ws6_A Methyltransferase; stru 97.4 7.1E-05 2.4E-09 56.8 2.9 53 173-227 41-99 (171)
163 3cc8_A Putative methyltransfer 97.4 0.0002 6.9E-09 56.8 5.6 61 162-227 23-84 (230)
164 1u2z_A Histone-lysine N-methyl 97.4 0.00024 8.3E-09 63.0 6.6 63 163-226 233-311 (433)
165 3e8s_A Putative SAM dependent 97.4 8.9E-05 3.1E-09 58.7 3.5 61 163-226 43-104 (227)
166 1sui_A Caffeoyl-COA O-methyltr 97.4 9.4E-05 3.2E-09 60.6 3.6 55 173-227 79-142 (247)
167 1xj5_A Spermidine synthase 1; 97.4 4.7E-05 1.6E-09 65.4 1.7 56 172-227 119-185 (334)
168 2yvl_A TRMI protein, hypotheti 97.4 0.00027 9.4E-09 57.0 6.3 64 163-229 82-153 (248)
169 1p91_A Ribosomal RNA large sub 97.4 0.00011 3.9E-09 60.2 4.0 56 172-227 84-141 (269)
170 2ih2_A Modification methylase 97.4 0.00024 8.2E-09 62.2 6.2 64 162-229 29-94 (421)
171 2ift_A Putative methylase HI07 97.4 6E-05 2.1E-09 59.6 2.1 53 174-227 54-115 (201)
172 3r3h_A O-methyltransferase, SA 97.4 6.5E-05 2.2E-09 61.4 2.3 55 173-227 60-123 (242)
173 2pt6_A Spermidine synthase; tr 97.4 6.1E-05 2.1E-09 64.3 2.2 55 173-227 116-181 (321)
174 2cmg_A Spermidine synthase; tr 97.4 0.00019 6.5E-09 59.4 5.1 54 172-227 71-135 (262)
175 3bwc_A Spermidine synthase; SA 97.4 0.00011 3.6E-09 62.2 3.6 56 172-227 94-160 (304)
176 3p9n_A Possible methyltransfer 97.3 0.00012 4.2E-09 56.9 3.6 54 173-227 44-104 (189)
177 2y1w_A Histone-arginine methyl 97.3 0.00017 6E-09 62.0 4.8 63 163-227 41-110 (348)
178 3c3y_A Pfomt, O-methyltransfer 97.3 0.00013 4.4E-09 59.3 3.7 56 172-227 69-133 (237)
179 3tm4_A TRNA (guanine N2-)-meth 97.3 0.00011 3.7E-09 63.9 3.4 57 171-227 215-279 (373)
180 3evz_A Methyltransferase; NYSG 97.3 0.00022 7.6E-09 57.0 5.0 54 171-225 53-113 (230)
181 3dr5_A Putative O-methyltransf 97.3 0.0001 3.6E-09 59.3 2.9 54 174-227 57-120 (221)
182 1qbj_A Protein (double-strande 97.3 0.00034 1.1E-08 47.4 4.9 64 30-102 11-74 (81)
183 1mjf_A Spermidine synthase; sp 97.3 0.00019 6.4E-09 60.0 4.3 53 173-226 75-144 (281)
184 3d2l_A SAM-dependent methyltra 97.3 0.00023 7.7E-09 57.2 4.6 52 173-227 33-90 (243)
185 2hnk_A SAM-dependent O-methylt 97.3 0.00016 5.3E-09 58.6 3.7 55 173-227 60-123 (239)
186 2i7c_A Spermidine synthase; tr 97.3 0.00013 4.3E-09 61.1 3.0 56 172-227 77-143 (283)
187 2fpo_A Methylase YHHF; structu 97.3 6.9E-05 2.4E-09 59.3 1.3 53 174-227 55-114 (202)
188 2o07_A Spermidine synthase; st 97.3 0.00016 5.6E-09 61.1 3.8 56 172-227 94-160 (304)
189 2h1r_A Dimethyladenosine trans 97.3 0.00012 4.2E-09 61.7 3.0 64 162-228 32-102 (299)
190 2heo_A Z-DNA binding protein 1 97.3 0.00021 7.3E-09 46.5 3.4 55 31-98 12-66 (67)
191 1inl_A Spermidine synthase; be 97.2 0.00017 5.9E-09 60.7 3.7 55 173-227 90-155 (296)
192 1zx0_A Guanidinoacetate N-meth 97.2 8.7E-05 3E-09 59.9 1.8 54 172-226 59-118 (236)
193 1uwv_A 23S rRNA (uracil-5-)-me 97.2 0.00028 9.6E-09 62.5 5.2 63 164-229 278-347 (433)
194 3k0b_A Predicted N6-adenine-sp 97.2 0.00032 1.1E-08 61.5 5.5 67 161-228 190-302 (393)
195 1uir_A Polyamine aminopropyltr 97.2 0.00019 6.4E-09 61.0 3.8 55 173-227 77-143 (314)
196 3m70_A Tellurite resistance pr 97.2 0.00017 6E-09 59.7 3.5 63 163-228 111-179 (286)
197 3sm3_A SAM-dependent methyltra 97.2 0.0003 1E-08 56.0 4.7 54 172-227 29-94 (235)
198 1wy7_A Hypothetical protein PH 97.2 0.0002 7E-09 56.3 3.5 55 172-227 48-108 (207)
199 2pbf_A Protein-L-isoaspartate 97.2 0.00038 1.3E-08 55.6 5.2 58 171-228 78-152 (227)
200 1qgp_A Protein (double strande 97.2 0.00026 8.9E-09 47.5 3.4 61 30-99 15-75 (77)
201 3ldu_A Putative methylase; str 97.2 0.00027 9.3E-09 61.8 4.4 67 161-228 184-296 (385)
202 2ex4_A Adrenal gland protein A 97.2 0.00016 5.4E-09 58.5 2.6 54 173-227 79-139 (241)
203 2b2c_A Spermidine synthase; be 97.2 0.00023 7.8E-09 60.5 3.7 55 173-227 108-173 (314)
204 3r0q_C Probable protein argini 97.2 0.00033 1.1E-08 60.9 4.8 62 164-227 55-123 (376)
205 3cbg_A O-methyltransferase; cy 97.1 0.00022 7.5E-09 57.6 3.2 54 173-226 72-134 (232)
206 1r18_A Protein-L-isoaspartate( 97.1 0.00025 8.7E-09 56.8 3.4 59 171-229 82-158 (227)
207 3gdh_A Trimethylguanosine synt 97.1 0.00021 7.1E-09 57.7 2.9 53 173-227 78-138 (241)
208 2kw5_A SLR1183 protein; struct 97.1 0.00035 1.2E-08 54.6 4.0 51 176-228 32-88 (202)
209 3giw_A Protein of unknown func 97.1 0.00036 1.2E-08 58.2 4.2 55 173-227 78-142 (277)
210 1y0u_A Arsenical resistance op 97.1 0.00082 2.8E-08 46.6 5.4 63 24-103 26-88 (96)
211 3ldg_A Putative uncharacterize 97.1 0.00049 1.7E-08 60.1 5.2 68 160-228 182-295 (384)
212 1ri5_A MRNA capping enzyme; me 97.1 0.00047 1.6E-08 57.1 4.9 56 172-228 63-126 (298)
213 1y8c_A S-adenosylmethionine-de 97.1 0.00038 1.3E-08 55.8 4.2 53 173-227 37-95 (246)
214 3thr_A Glycine N-methyltransfe 97.1 0.00017 5.9E-09 59.9 2.2 54 172-227 56-120 (293)
215 1i1n_A Protein-L-isoaspartate 97.1 0.0004 1.4E-08 55.4 4.1 58 171-228 75-145 (226)
216 3b73_A PHIH1 repressor-like pr 97.1 0.00058 2E-08 49.1 4.5 64 30-107 14-80 (111)
217 3bgv_A MRNA CAP guanine-N7 met 97.0 0.0017 5.7E-08 54.6 7.8 79 146-228 9-102 (313)
218 3fzg_A 16S rRNA methylase; met 97.0 0.00047 1.6E-08 54.5 3.8 43 172-214 48-91 (200)
219 3htx_A HEN1; HEN1, small RNA m 97.0 0.00035 1.2E-08 66.4 3.4 55 173-227 721-789 (950)
220 3iv6_A Putative Zn-dependent a 97.0 0.00088 3E-08 55.4 5.4 51 161-214 34-85 (261)
221 4hc4_A Protein arginine N-meth 97.0 0.00047 1.6E-08 60.1 3.9 53 174-227 84-143 (376)
222 2oxt_A Nucleoside-2'-O-methylt 96.9 0.00088 3E-08 55.5 5.2 54 171-227 72-135 (265)
223 3frh_A 16S rRNA methylase; met 96.9 0.00079 2.7E-08 55.1 4.7 57 171-230 103-165 (253)
224 1wg8_A Predicted S-adenosylmet 96.9 0.0013 4.3E-08 54.9 5.7 63 161-226 11-76 (285)
225 1af7_A Chemotaxis receptor met 96.9 0.00078 2.7E-08 56.1 4.4 40 174-213 106-154 (274)
226 1ixk_A Methyltransferase; open 96.9 0.00056 1.9E-08 58.0 3.6 61 166-227 112-180 (315)
227 2p8j_A S-adenosylmethionine-de 96.9 0.00042 1.4E-08 54.3 2.6 54 173-227 23-82 (209)
228 2wa2_A Non-structural protein 96.9 0.00076 2.6E-08 56.2 4.2 54 171-227 80-143 (276)
229 3dmg_A Probable ribosomal RNA 96.9 0.00074 2.5E-08 58.9 4.1 55 173-229 233-293 (381)
230 3k6r_A Putative transferase PH 96.8 0.0008 2.7E-08 56.2 4.0 57 171-228 123-187 (278)
231 3lcv_B Sisomicin-gentamicin re 96.8 0.00033 1.1E-08 58.0 1.5 60 172-231 131-196 (281)
232 3mq0_A Transcriptional repress 96.8 0.00081 2.8E-08 56.0 3.7 61 31-104 32-92 (275)
233 3ajd_A Putative methyltransfer 96.8 0.00061 2.1E-08 56.5 2.9 56 171-226 81-144 (274)
234 2r6z_A UPF0341 protein in RSP 96.8 0.0011 3.7E-08 54.7 4.3 55 171-227 81-150 (258)
235 3o4f_A Spermidine synthase; am 96.8 0.0011 3.6E-08 55.9 4.2 57 172-228 82-150 (294)
236 1xmk_A Double-stranded RNA-spe 96.8 0.0012 4.1E-08 44.4 3.7 61 30-102 12-73 (79)
237 2y75_A HTH-type transcriptiona 96.7 0.0019 6.4E-08 47.3 4.9 72 34-121 14-85 (129)
238 2qfm_A Spermine synthase; sper 96.7 0.00099 3.4E-08 57.6 3.6 55 172-227 187-256 (364)
239 3id6_C Fibrillarin-like rRNA/T 96.7 0.0023 7.7E-08 52.0 5.6 58 171-228 74-137 (232)
240 2avn_A Ubiquinone/menaquinone 96.6 0.0014 4.8E-08 53.5 4.0 53 173-227 54-107 (260)
241 4df3_A Fibrillarin-like rRNA/T 96.6 0.0067 2.3E-07 49.2 8.0 57 171-227 75-137 (233)
242 1vlm_A SAM-dependent methyltra 96.6 0.0014 4.8E-08 52.0 3.7 47 174-227 48-95 (219)
243 2yx1_A Hypothetical protein MJ 96.6 0.0011 3.6E-08 56.8 3.1 54 172-228 194-255 (336)
244 2gs9_A Hypothetical protein TT 96.6 0.0013 4.4E-08 51.7 3.2 50 173-227 36-88 (211)
245 2p41_A Type II methyltransfera 96.5 0.0018 6.1E-08 54.7 4.2 54 171-227 80-143 (305)
246 3opn_A Putative hemolysin; str 96.5 0.0041 1.4E-07 50.3 6.2 47 163-211 27-75 (232)
247 2f8l_A Hypothetical protein LM 96.5 0.0012 4.2E-08 56.4 3.2 58 172-229 129-197 (344)
248 2i62_A Nicotinamide N-methyltr 96.5 0.0004 1.4E-08 56.5 0.1 41 172-213 55-96 (265)
249 2igt_A SAM dependent methyltra 96.5 0.00083 2.8E-08 57.5 2.0 53 173-227 153-214 (332)
250 3sso_A Methyltransferase; macr 96.5 0.0025 8.6E-08 55.9 5.0 53 173-227 216-275 (419)
251 4e2x_A TCAB9; kijanose, tetron 96.5 0.0024 8.1E-08 55.9 4.8 52 161-215 96-148 (416)
252 3pqk_A Biofilm growth-associat 96.5 0.0035 1.2E-07 43.7 4.8 51 25-84 19-69 (102)
253 3v97_A Ribosomal RNA large sub 96.5 0.0021 7.2E-08 60.4 4.6 67 161-228 179-295 (703)
254 4azs_A Methyltransferase WBDD; 96.5 0.0014 4.9E-08 60.0 3.3 51 173-225 66-123 (569)
255 2jjq_A Uncharacterized RNA met 96.4 0.0028 9.5E-08 56.1 4.9 55 173-230 290-351 (425)
256 3bzb_A Uncharacterized protein 96.4 0.0031 1.1E-07 52.4 4.9 41 172-213 78-120 (281)
257 2xrn_A HTH-type transcriptiona 96.4 0.0021 7.2E-08 52.3 3.8 62 32-105 9-70 (241)
258 2yxl_A PH0851 protein, 450AA l 96.4 0.0025 8.7E-08 56.6 4.4 63 164-227 251-321 (450)
259 2aot_A HMT, histamine N-methyl 96.4 0.0037 1.3E-07 51.9 5.2 41 173-213 52-99 (292)
260 1mkm_A ICLR transcriptional re 96.3 0.004 1.4E-07 50.8 5.1 59 31-102 10-68 (249)
261 2zfu_A Nucleomethylin, cerebra 96.3 0.0042 1.4E-07 48.9 5.0 44 171-227 65-108 (215)
262 3tka_A Ribosomal RNA small sub 96.3 0.01 3.5E-07 50.7 7.6 65 161-226 46-114 (347)
263 1ub9_A Hypothetical protein PH 96.3 0.003 1E-07 43.5 3.6 71 24-102 11-81 (100)
264 3ech_A MEXR, multidrug resista 96.3 0.0097 3.3E-07 43.7 6.6 65 29-104 37-104 (142)
265 2oqg_A Possible transcriptiona 96.3 0.0037 1.2E-07 44.3 4.1 61 29-101 21-81 (114)
266 3cuo_A Uncharacterized HTH-typ 96.3 0.0027 9.1E-08 43.8 3.3 65 26-101 21-85 (99)
267 1oyi_A Double-stranded RNA-bin 96.2 0.0041 1.4E-07 42.0 3.6 60 29-101 17-76 (82)
268 3jth_A Transcription activator 96.2 0.0027 9.3E-08 44.0 2.8 51 25-84 19-69 (98)
269 1u2w_A CADC repressor, cadmium 96.2 0.0049 1.7E-07 44.7 4.2 54 23-84 36-89 (122)
270 3t8r_A Staphylococcus aureus C 96.2 0.0071 2.4E-07 45.2 5.2 61 45-121 27-87 (143)
271 3lwf_A LIN1550 protein, putati 96.1 0.0061 2.1E-07 46.5 4.7 61 45-121 43-103 (159)
272 3f6o_A Probable transcriptiona 96.1 0.0037 1.3E-07 45.0 3.3 66 24-101 13-78 (118)
273 2as0_A Hypothetical protein PH 96.1 0.002 6.8E-08 56.2 2.1 54 173-227 217-278 (396)
274 3r4k_A Transcriptional regulat 96.1 0.0013 4.6E-08 54.2 0.9 61 32-104 9-69 (260)
275 2b78_A Hypothetical protein SM 96.1 0.0017 5.9E-08 56.6 1.6 55 172-227 211-274 (385)
276 4auk_A Ribosomal RNA large sub 96.1 0.005 1.7E-07 53.3 4.4 58 171-230 209-266 (375)
277 2hzt_A Putative HTH-type trans 96.0 0.009 3.1E-07 42.2 5.0 54 45-103 26-80 (107)
278 1wxx_A TT1595, hypothetical pr 96.0 0.0017 5.7E-08 56.5 1.1 53 173-227 209-268 (382)
279 1xn7_A Hypothetical protein YH 96.0 0.0083 2.9E-07 40.1 4.3 44 33-84 6-49 (78)
280 3bt7_A TRNA (uracil-5-)-methyl 96.0 0.0055 1.9E-07 53.0 4.2 52 174-227 214-272 (369)
281 2k02_A Ferrous iron transport 95.9 0.0082 2.8E-07 41.0 4.1 44 33-84 6-49 (87)
282 2g7u_A Transcriptional regulat 95.9 0.0029 1E-07 52.0 2.2 61 32-106 17-77 (257)
283 2hr3_A Probable transcriptiona 95.9 0.03 1E-06 41.0 7.7 68 28-104 34-103 (147)
284 3ll7_A Putative methyltransfer 95.9 0.0035 1.2E-07 55.1 2.7 54 173-228 93-155 (410)
285 1r1u_A CZRA, repressor protein 95.9 0.0057 1.9E-07 43.1 3.3 51 25-84 22-72 (106)
286 1sqg_A SUN protein, FMU protei 95.9 0.0081 2.8E-07 53.0 4.9 62 165-227 239-306 (429)
287 3hp7_A Hemolysin, putative; st 95.8 0.015 5E-07 48.8 6.2 42 163-206 75-117 (291)
288 2jsc_A Transcriptional regulat 95.8 0.006 2E-07 43.9 3.1 65 24-100 16-80 (118)
289 2okc_A Type I restriction enzy 95.8 0.0068 2.3E-07 53.7 4.1 65 163-228 162-248 (445)
290 2vdw_A Vaccinia virus capping 95.7 0.006 2.1E-07 51.3 3.4 41 173-214 48-89 (302)
291 2gxg_A 146AA long hypothetical 95.7 0.051 1.7E-06 39.7 8.2 63 30-104 38-103 (146)
292 2ia2_A Putative transcriptiona 95.7 0.0033 1.1E-07 51.9 1.7 60 32-105 24-83 (265)
293 2kko_A Possible transcriptiona 95.7 0.0028 9.6E-08 45.0 1.1 48 28-84 24-71 (108)
294 3df8_A Possible HXLR family tr 95.6 0.0095 3.2E-07 42.4 3.7 73 10-104 17-92 (111)
295 3e6m_A MARR family transcripti 95.6 0.026 9E-07 42.3 6.4 67 30-105 54-121 (161)
296 2o0y_A Transcriptional regulat 95.6 0.0046 1.6E-07 50.9 2.2 59 32-103 26-84 (260)
297 3c0k_A UPF0064 protein YCCW; P 95.6 0.0032 1.1E-07 54.9 1.3 54 173-227 220-282 (396)
298 1tbx_A ORF F-93, hypothetical 95.6 0.0089 3E-07 41.3 3.4 63 31-104 10-76 (99)
299 1z7u_A Hypothetical protein EF 95.6 0.013 4.4E-07 41.7 4.3 61 34-103 27-88 (112)
300 1r7j_A Conserved hypothetical 95.6 0.012 3.9E-07 40.9 3.8 46 47-104 21-66 (95)
301 3k69_A Putative transcription 95.6 0.02 6.7E-07 43.8 5.4 63 45-123 27-89 (162)
302 3f6v_A Possible transcriptiona 95.5 0.0073 2.5E-07 45.6 2.9 70 21-102 50-119 (151)
303 2a14_A Indolethylamine N-methy 95.5 0.0014 4.7E-08 53.8 -1.3 40 172-212 54-94 (263)
304 2htj_A P fimbrial regulatory p 95.5 0.012 4.1E-07 39.3 3.6 44 32-83 3-46 (81)
305 2wte_A CSA3; antiviral protein 95.5 0.011 3.6E-07 48.4 3.9 78 30-120 153-231 (244)
306 1on2_A Transcriptional regulat 95.5 0.014 4.9E-07 42.9 4.3 50 45-105 21-70 (142)
307 2oyr_A UPF0341 protein YHIQ; a 95.5 0.011 3.6E-07 48.8 3.9 62 163-227 77-156 (258)
308 3nrv_A Putative transcriptiona 95.5 0.028 9.4E-07 41.4 5.9 67 29-104 40-107 (148)
309 3fm5_A Transcriptional regulat 95.5 0.049 1.7E-06 40.1 7.3 66 30-105 40-108 (150)
310 3g3z_A NMB1585, transcriptiona 95.3 0.018 6.3E-07 42.2 4.5 64 30-104 32-98 (145)
311 3k0l_A Repressor protein; heli 95.3 0.023 8E-07 42.7 5.2 65 30-105 47-114 (162)
312 2jt1_A PEFI protein; solution 95.3 0.015 5.2E-07 38.7 3.5 44 34-84 9-57 (77)
313 1r1t_A Transcriptional repress 95.3 0.013 4.4E-07 42.5 3.3 48 28-84 45-92 (122)
314 2nnn_A Probable transcriptiona 95.2 0.017 5.7E-07 42.0 4.0 64 30-104 39-105 (140)
315 3bja_A Transcriptional regulat 95.2 0.02 7E-07 41.4 4.5 64 30-104 34-100 (139)
316 4a5n_A Uncharacterized HTH-typ 95.2 0.023 7.7E-07 41.9 4.6 79 9-105 15-94 (131)
317 2fsw_A PG_0823 protein; alpha- 95.2 0.017 5.7E-07 40.7 3.7 78 9-104 14-92 (107)
318 3r0a_A Putative transcriptiona 95.2 0.014 4.8E-07 42.3 3.4 48 30-84 27-75 (123)
319 1jgs_A Multiple antibiotic res 95.2 0.021 7.3E-07 41.4 4.4 64 30-104 35-101 (138)
320 2b9e_A NOL1/NOP2/SUN domain fa 95.2 0.024 8.3E-07 47.8 5.3 57 171-227 100-164 (309)
321 3m6w_A RRNA methylase; rRNA me 95.2 0.012 4.1E-07 52.6 3.5 55 171-226 99-161 (464)
322 2g72_A Phenylethanolamine N-me 95.1 0.0044 1.5E-07 51.3 0.5 40 173-213 71-111 (289)
323 3c6k_A Spermine synthase; sper 95.1 0.015 5E-07 50.5 3.7 53 173-226 205-272 (381)
324 3oop_A LIN2960 protein; protei 95.0 0.015 5.3E-07 42.6 3.2 67 29-104 37-104 (143)
325 3bpv_A Transcriptional regulat 95.0 0.018 6.3E-07 41.7 3.6 63 30-103 30-95 (138)
326 3bdd_A Regulatory protein MARR 95.0 0.027 9.3E-07 40.9 4.5 67 30-105 32-99 (142)
327 2rdp_A Putative transcriptiona 95.0 0.023 8E-07 41.8 4.1 62 31-103 44-108 (150)
328 1ylf_A RRF2 family protein; st 95.0 0.015 5E-07 43.7 3.0 61 22-99 13-73 (149)
329 1s3j_A YUSO protein; structura 94.9 0.051 1.7E-06 40.2 6.0 62 31-103 39-103 (155)
330 3v97_A Ribosomal RNA large sub 94.9 0.01 3.4E-07 55.8 2.4 54 173-227 539-601 (703)
331 2f2e_A PA1607; transcription f 94.9 0.028 9.7E-07 42.0 4.5 54 45-104 36-89 (146)
332 3hsr_A HTH-type transcriptiona 94.9 0.031 1.1E-06 40.9 4.6 65 31-104 38-103 (140)
333 1sfx_A Conserved hypothetical 94.9 0.025 8.6E-07 39.1 3.9 47 30-84 21-67 (109)
334 3cdh_A Transcriptional regulat 94.9 0.023 7.7E-07 42.3 3.9 65 31-104 45-110 (155)
335 4dmg_A Putative uncharacterize 94.8 0.011 3.6E-07 51.8 2.2 53 173-227 214-272 (393)
336 4gqb_A Protein arginine N-meth 94.8 0.017 5.8E-07 53.5 3.6 88 136-230 324-426 (637)
337 3jw4_A Transcriptional regulat 94.8 0.095 3.2E-06 38.5 7.1 65 31-104 43-110 (148)
338 2frx_A Hypothetical protein YE 94.8 0.023 7.9E-07 50.9 4.3 55 173-227 117-179 (479)
339 2nyx_A Probable transcriptiona 94.7 0.071 2.4E-06 40.3 6.4 64 30-104 46-112 (168)
340 2x4h_A Hypothetical protein SS 94.7 0.029 9.8E-07 41.1 4.0 48 45-104 30-77 (139)
341 2k4m_A TR8_protein, UPF0146 pr 94.7 0.026 9E-07 42.4 3.8 47 173-229 35-83 (153)
342 1z91_A Organic hydroperoxide r 94.7 0.021 7.3E-07 41.9 3.3 69 30-107 41-110 (147)
343 2fbh_A Transcriptional regulat 94.7 0.03 1E-06 40.9 4.1 61 31-102 39-103 (146)
344 1lj9_A Transcriptional regulat 94.7 0.027 9.2E-07 41.2 3.8 63 31-104 31-96 (144)
345 2eth_A Transcriptional regulat 94.7 0.039 1.3E-06 40.9 4.8 65 29-104 44-111 (154)
346 2qww_A Transcriptional regulat 94.7 0.026 9E-07 41.8 3.8 65 30-105 42-111 (154)
347 2fbi_A Probable transcriptiona 94.7 0.022 7.5E-07 41.4 3.2 64 30-104 37-103 (142)
348 3m4x_A NOL1/NOP2/SUN family pr 94.6 0.015 5.1E-07 51.9 2.6 55 171-225 103-165 (456)
349 1yyv_A Putative transcriptiona 94.6 0.027 9.1E-07 41.4 3.5 62 34-104 40-102 (131)
350 3deu_A Transcriptional regulat 94.5 0.042 1.4E-06 41.6 4.7 68 29-104 53-121 (166)
351 2lnb_A Z-DNA-binding protein 1 94.5 0.034 1.1E-06 36.7 3.5 56 30-98 20-75 (80)
352 2a61_A Transcriptional regulat 94.5 0.029 9.9E-07 41.0 3.6 65 29-104 33-100 (145)
353 3s2w_A Transcriptional regulat 94.4 0.027 9.3E-07 42.1 3.4 63 32-105 53-118 (159)
354 3f3x_A Transcriptional regulat 94.4 0.085 2.9E-06 38.5 6.0 63 30-104 38-103 (144)
355 3bj6_A Transcriptional regulat 94.4 0.036 1.2E-06 40.9 3.9 63 30-103 41-106 (152)
356 3tgn_A ADC operon repressor AD 94.4 0.037 1.3E-06 40.5 4.0 65 29-103 38-103 (146)
357 3eco_A MEPR; mutlidrug efflux 94.4 0.032 1.1E-06 40.5 3.6 67 30-105 32-101 (139)
358 2fa5_A Transcriptional regulat 94.4 0.043 1.5E-06 41.0 4.4 65 31-104 51-116 (162)
359 2fu4_A Ferric uptake regulatio 94.3 0.029 9.9E-07 37.4 3.0 50 30-85 18-72 (83)
360 2frh_A SARA, staphylococcal ac 94.3 0.037 1.3E-06 40.0 3.8 64 31-103 39-105 (127)
361 3bro_A Transcriptional regulat 94.3 0.05 1.7E-06 39.5 4.5 65 30-103 35-102 (141)
362 4hbl_A Transcriptional regulat 94.3 0.022 7.7E-07 42.1 2.6 64 29-103 41-107 (149)
363 3cjn_A Transcriptional regulat 94.3 0.034 1.1E-06 41.6 3.6 65 30-103 53-118 (162)
364 2dul_A N(2),N(2)-dimethylguano 94.2 0.042 1.4E-06 47.7 4.4 40 174-213 48-88 (378)
365 4aik_A Transcriptional regulat 94.2 0.069 2.4E-06 39.8 5.1 65 31-105 33-100 (151)
366 2pex_A Transcriptional regulat 94.1 0.033 1.1E-06 41.3 3.2 68 30-106 48-116 (153)
367 3axs_A Probable N(2),N(2)-dime 94.1 0.015 5.1E-07 50.8 1.4 55 173-227 52-116 (392)
368 3boq_A Transcriptional regulat 94.1 0.035 1.2E-06 41.4 3.3 65 30-104 48-115 (160)
369 1i4w_A Mitochondrial replicati 94.1 0.089 3E-06 45.2 6.2 54 174-227 59-116 (353)
370 1xd7_A YWNA; structural genomi 94.0 0.087 3E-06 39.2 5.4 57 48-121 25-81 (145)
371 1rjd_A PPM1P, carboxy methyl t 94.0 0.043 1.5E-06 46.8 4.0 55 173-227 97-178 (334)
372 2bv6_A MGRA, HTH-type transcri 93.9 0.041 1.4E-06 40.1 3.4 64 30-104 38-104 (142)
373 2xyq_A Putative 2'-O-methyl tr 93.8 0.072 2.5E-06 44.5 5.1 50 171-228 61-118 (290)
374 2h09_A Transcriptional regulat 93.8 0.056 1.9E-06 40.3 4.0 56 35-104 46-101 (155)
375 3kp7_A Transcriptional regulat 93.8 0.24 8.1E-06 36.4 7.4 62 31-104 40-106 (151)
376 2pg4_A Uncharacterized protein 93.7 0.12 4E-06 35.2 5.3 61 34-103 20-81 (95)
377 1sfu_A 34L protein; protein/Z- 93.7 0.13 4.3E-06 33.9 5.0 45 45-98 28-72 (75)
378 1q1h_A TFE, transcription fact 93.6 0.058 2E-06 37.9 3.6 47 31-84 20-66 (110)
379 2zkz_A Transcriptional repress 93.6 0.039 1.3E-06 38.2 2.6 65 25-101 23-87 (99)
380 2w25_A Probable transcriptiona 93.5 0.077 2.6E-06 39.5 4.3 47 30-84 8-54 (150)
381 2pn6_A ST1022, 150AA long hypo 93.5 0.069 2.4E-06 39.6 4.0 46 30-83 4-49 (150)
382 2cfx_A HTH-type transcriptiona 93.5 0.079 2.7E-06 39.2 4.3 47 30-84 6-52 (144)
383 3ua3_A Protein arginine N-meth 93.4 0.038 1.3E-06 51.7 2.9 55 173-227 409-483 (745)
384 2lkp_A Transcriptional regulat 93.3 0.066 2.2E-06 38.1 3.5 48 28-84 31-78 (119)
385 3nqo_A MARR-family transcripti 93.2 0.086 2.9E-06 40.8 4.2 71 28-105 40-111 (189)
386 1bja_A Transcription regulator 93.1 0.1 3.5E-06 36.1 4.0 59 31-104 18-77 (95)
387 2p5v_A Transcriptional regulat 93.1 0.098 3.3E-06 39.4 4.3 47 30-84 11-57 (162)
388 2fbk_A Transcriptional regulat 93.1 0.049 1.7E-06 41.7 2.6 67 30-104 70-139 (181)
389 3u2r_A Regulatory protein MARR 92.9 0.066 2.3E-06 40.3 3.1 67 30-105 47-116 (168)
390 2dbb_A Putative HTH-type trans 92.8 0.11 3.6E-06 38.7 4.2 46 30-83 10-55 (151)
391 3gcz_A Polyprotein; flavivirus 92.8 0.092 3.2E-06 43.6 4.1 43 162-205 80-122 (282)
392 2cyy_A Putative HTH-type trans 92.8 0.094 3.2E-06 39.0 3.9 46 30-83 8-53 (151)
393 2o03_A Probable zinc uptake re 92.8 0.11 3.9E-06 37.8 4.2 51 28-85 10-65 (131)
394 2d1h_A ST1889, 109AA long hypo 92.7 0.081 2.8E-06 36.4 3.2 35 45-84 35-69 (109)
395 2ia0_A Putative HTH-type trans 92.5 0.13 4.4E-06 39.4 4.3 46 30-83 18-63 (171)
396 2e1c_A Putative HTH-type trans 92.5 0.14 4.7E-06 39.2 4.4 46 30-83 28-73 (171)
397 1i1g_A Transcriptional regulat 92.5 0.11 3.9E-06 37.9 3.9 45 31-83 6-50 (141)
398 2cg4_A Regulatory protein ASNC 92.4 0.11 3.7E-06 38.7 3.8 46 30-83 9-54 (152)
399 2qvo_A Uncharacterized protein 92.4 0.063 2.1E-06 36.7 2.2 48 46-104 30-80 (95)
400 2k4b_A Transcriptional regulat 92.2 0.074 2.5E-06 37.1 2.4 50 31-84 37-86 (99)
401 3i4p_A Transcriptional regulat 92.2 0.13 4.6E-06 38.8 4.1 46 30-83 4-49 (162)
402 4b8x_A SCO5413, possible MARR- 92.1 0.051 1.8E-06 40.3 1.5 63 33-104 39-104 (147)
403 2vn2_A DNAD, chromosome replic 92.0 0.16 5.4E-06 36.9 4.1 34 46-84 51-84 (128)
404 2fe3_A Peroxide operon regulat 92.0 0.17 5.7E-06 37.6 4.3 50 29-85 22-76 (145)
405 1uly_A Hypothetical protein PH 91.9 0.17 5.9E-06 39.5 4.5 51 25-84 16-66 (192)
406 3hrs_A Metalloregulator SCAR; 91.9 0.12 4.1E-06 41.0 3.6 50 45-105 19-68 (214)
407 2fxa_A Protease production reg 91.9 0.097 3.3E-06 41.2 3.0 65 30-105 49-116 (207)
408 2dk5_A DNA-directed RNA polyme 91.9 0.17 5.7E-06 34.7 3.8 48 31-84 22-69 (91)
409 1ku9_A Hypothetical protein MJ 91.8 0.12 4.2E-06 37.6 3.4 47 31-84 28-74 (152)
410 3p8z_A Mtase, non-structural p 91.4 0.26 8.9E-06 40.0 5.0 65 162-227 68-139 (267)
411 3evf_A RNA-directed RNA polyme 91.3 0.18 6E-06 41.8 4.0 41 163-204 65-105 (277)
412 2ar0_A M.ecoki, type I restric 91.2 0.14 4.9E-06 46.4 3.7 64 163-227 160-253 (541)
413 3b5i_A S-adenosyl-L-methionine 91.2 0.13 4.5E-06 44.5 3.3 35 173-207 52-101 (374)
414 2xvc_A ESCRT-III, SSO0910; cel 91.1 0.19 6.5E-06 31.0 3.0 46 31-83 12-57 (59)
415 2qlz_A Transcription factor PF 91.1 0.066 2.3E-06 43.3 1.3 71 23-102 6-79 (232)
416 2p4w_A Transcriptional regulat 91.1 0.2 6.8E-06 39.5 4.0 70 24-102 10-81 (202)
417 3k2z_A LEXA repressor; winged 91.0 0.23 7.9E-06 38.7 4.3 42 36-84 16-57 (196)
418 1p6r_A Penicillinase repressor 90.9 0.19 6.4E-06 33.2 3.2 51 30-84 10-60 (82)
419 4fx0_A Probable transcriptiona 90.6 0.19 6.3E-06 37.3 3.3 65 31-104 35-104 (148)
420 2zig_A TTHA0409, putative modi 90.5 0.42 1.4E-05 39.7 5.8 48 162-213 226-274 (297)
421 1jhg_A Trp operon repressor; c 90.5 0.37 1.3E-05 33.6 4.5 42 28-78 44-85 (101)
422 3khk_A Type I restriction-modi 90.5 0.11 3.6E-06 47.4 2.2 54 175-228 246-322 (544)
423 2xig_A Ferric uptake regulatio 90.4 0.35 1.2E-05 36.1 4.7 51 28-85 26-81 (150)
424 1j5y_A Transcriptional regulat 90.3 0.25 8.6E-06 38.2 3.9 59 29-101 21-80 (187)
425 1p4x_A Staphylococcal accessor 90.2 0.24 8.1E-06 40.4 3.9 66 30-104 159-227 (250)
426 4esf_A PADR-like transcription 89.8 0.59 2E-05 33.3 5.3 86 24-120 6-100 (117)
427 2px2_A Genome polyprotein [con 89.7 0.13 4.6E-06 42.1 1.9 63 163-228 64-135 (269)
428 3lkd_A Type I restriction-modi 89.7 0.14 4.8E-06 46.5 2.3 56 173-228 221-288 (542)
429 3u1d_A Uncharacterized protein 89.3 0.45 1.6E-05 35.7 4.5 86 30-120 30-124 (151)
430 2efj_A 3,7-dimethylxanthine me 89.3 0.21 7.3E-06 43.3 3.0 33 174-206 53-102 (384)
431 2obp_A Putative DNA-binding pr 89.2 0.34 1.2E-05 33.5 3.4 51 45-102 35-85 (96)
432 3mwm_A ZUR, putative metal upt 88.8 0.37 1.3E-05 35.4 3.7 55 28-85 13-68 (139)
433 1hsj_A Fusion protein consisti 88.6 0.29 9.9E-06 43.2 3.5 63 31-102 406-471 (487)
434 2v79_A DNA replication protein 88.4 0.29 1E-05 36.0 2.9 35 45-84 50-84 (135)
435 1z6r_A MLC protein; transcript 87.7 0.46 1.6E-05 41.1 4.1 51 26-84 13-63 (406)
436 3f8b_A Transcriptional regulat 87.3 0.95 3.3E-05 32.1 5.0 87 23-120 6-103 (116)
437 2hoe_A N-acetylglucosamine kin 87.1 0.35 1.2E-05 41.6 3.0 54 22-84 13-66 (380)
438 3eld_A Methyltransferase; flav 87.1 0.6 2.1E-05 39.0 4.3 42 163-205 72-113 (300)
439 3l7w_A Putative uncharacterize 87.0 0.39 1.3E-05 33.6 2.7 66 28-103 8-79 (108)
440 1fx7_A Iron-dependent represso 86.7 0.42 1.4E-05 38.1 3.1 48 47-105 23-72 (230)
441 1yg2_A Gene activator APHA; vi 86.4 0.8 2.7E-05 35.0 4.5 64 30-102 3-76 (179)
442 1z05_A Transcriptional regulat 86.3 0.76 2.6E-05 40.1 4.8 52 25-84 35-86 (429)
443 1okr_A MECI, methicillin resis 86.1 0.18 6E-06 35.8 0.5 50 31-84 12-61 (123)
444 3hhh_A Transcriptional regulat 85.6 0.97 3.3E-05 32.1 4.2 87 23-120 7-102 (116)
445 2esh_A Conserved hypothetical 85.6 1.7 5.7E-05 30.7 5.6 74 26-103 10-88 (118)
446 4g6q_A Putative uncharacterize 85.5 0.36 1.2E-05 37.2 2.1 52 25-84 19-70 (182)
447 3cta_A Riboflavin kinase; stru 85.4 0.57 2E-05 37.3 3.3 53 45-105 26-78 (230)
448 1sd4_A Penicillinase repressor 85.4 0.66 2.3E-05 32.9 3.3 51 30-84 11-61 (126)
449 3s1s_A Restriction endonucleas 85.1 0.65 2.2E-05 44.2 3.9 42 171-212 319-364 (878)
450 3i71_A Ethanolamine utilizatio 85.0 1.8 6.3E-05 26.7 4.6 44 45-100 17-60 (68)
451 3lkz_A Non-structural protein 84.8 0.79 2.7E-05 38.3 3.9 44 162-206 84-127 (321)
452 1m6e_X S-adenosyl-L-methionnin 84.6 0.28 9.6E-06 42.2 1.1 59 172-230 50-136 (359)
453 2yu3_A DNA-directed RNA polyme 84.6 0.63 2.2E-05 32.1 2.7 49 30-84 38-86 (95)
454 2uyo_A Hypothetical protein ML 84.6 0.75 2.6E-05 38.6 3.7 53 173-227 102-164 (310)
455 1mzb_A Ferric uptake regulatio 84.1 0.84 2.9E-05 33.3 3.4 51 29-85 18-73 (136)
456 2py6_A Methyltransferase FKBM; 84.0 1.2 4.2E-05 38.7 5.0 39 172-210 225-266 (409)
457 1p4x_A Staphylococcal accessor 83.5 1 3.6E-05 36.5 4.1 65 31-104 36-103 (250)
458 1v4r_A Transcriptional repress 83.3 0.47 1.6E-05 32.7 1.7 52 25-84 15-68 (102)
459 2qq9_A Diphtheria toxin repres 82.9 1.2 3.9E-05 35.5 4.1 49 46-105 24-72 (226)
460 3e6c_C CPRK, cyclic nucleotide 82.8 0.96 3.3E-05 35.9 3.6 33 46-83 177-209 (250)
461 2p8t_A Hypothetical protein PH 82.7 0.8 2.7E-05 36.0 2.9 48 45-104 29-76 (200)
462 2o0m_A Transcriptional regulat 82.1 0.27 9.2E-06 41.9 0.0 62 30-106 21-82 (345)
463 2g9w_A Conserved hypothetical 81.9 1 3.6E-05 32.7 3.2 52 30-84 10-61 (138)
464 1bia_A BIRA bifunctional prote 81.5 1.2 4.1E-05 37.5 3.8 56 31-99 7-62 (321)
465 3tqn_A Transcriptional regulat 81.5 1.1 3.8E-05 31.5 3.1 35 45-84 31-66 (113)
466 1zkd_A DUF185; NESG, RPR58, st 81.1 2.9 9.9E-05 36.2 6.1 64 142-210 54-124 (387)
467 2ek5_A Predicted transcription 80.6 1.9 6.5E-05 31.1 4.2 36 44-84 25-61 (129)
468 2vxz_A Pyrsv_GP04; viral prote 80.6 1.3 4.4E-05 33.1 3.2 46 31-85 13-58 (165)
469 3eyy_A Putative iron uptake re 80.5 1.3 4.4E-05 32.7 3.3 53 29-85 19-72 (145)
470 2pjp_A Selenocysteine-specific 80.0 0.82 2.8E-05 32.6 2.0 44 45-99 19-62 (121)
471 3elk_A Putative transcriptiona 79.3 1.8 6E-05 30.8 3.6 92 23-120 8-103 (117)
472 3lmm_A Uncharacterized protein 78.5 1.4 4.7E-05 40.3 3.4 58 30-102 431-493 (583)
473 4esb_A Transcriptional regulat 78.4 1.7 5.9E-05 30.7 3.3 81 31-121 11-99 (115)
474 2w57_A Ferric uptake regulatio 78.3 1.2 4.1E-05 33.1 2.5 51 29-85 17-72 (150)
475 3neu_A LIN1836 protein; struct 78.2 2.1 7.3E-05 30.6 3.8 36 44-84 34-70 (125)
476 3by6_A Predicted transcription 77.9 1.7 5.7E-05 31.3 3.1 35 45-84 33-68 (126)
477 3kor_A Possible Trp repressor; 77.8 4.3 0.00015 29.0 5.1 41 27-77 61-101 (119)
478 2qy6_A UPF0209 protein YFCK; s 77.7 1.7 5.8E-05 35.4 3.5 33 173-205 60-104 (257)
479 2b0l_A GTP-sensing transcripti 77.4 1.4 4.6E-05 30.6 2.4 35 45-84 41-76 (102)
480 4ets_A Ferric uptake regulatio 76.9 2.5 8.7E-05 31.8 4.0 53 29-84 33-88 (162)
481 2oz6_A Virulence factor regula 76.7 1.6 5.4E-05 33.2 2.9 33 46-83 164-196 (207)
482 3eyi_A Z-DNA-binding protein 1 76.7 3.3 0.00011 26.6 3.8 46 31-84 12-58 (72)
483 3maj_A DNA processing chain A; 76.6 1.1 3.8E-05 38.7 2.1 52 31-97 330-381 (382)
484 3frw_A Putative Trp repressor 76.3 3 0.0001 29.2 3.9 41 27-77 44-84 (107)
485 2w48_A Sorbitol operon regulat 76.2 2.3 7.8E-05 35.5 3.9 35 45-84 20-55 (315)
486 3e97_A Transcriptional regulat 76.1 1.9 6.6E-05 33.5 3.3 33 46-83 175-207 (231)
487 3dv8_A Transcriptional regulat 75.9 1.8 6.2E-05 33.2 3.1 33 46-83 169-201 (220)
488 4ham_A LMO2241 protein; struct 75.7 2 7E-05 31.0 3.1 37 43-84 34-71 (134)
489 2zcw_A TTHA1359, transcription 75.6 1.6 5.6E-05 33.2 2.7 33 46-83 146-178 (202)
490 1g60_A Adenine-specific methyl 75.6 4.9 0.00017 32.4 5.7 42 162-207 203-244 (260)
491 3dkw_A DNR protein; CRP-FNR, H 75.5 2 6.7E-05 33.2 3.2 34 45-83 177-210 (227)
492 2gau_A Transcriptional regulat 75.5 2.2 7.5E-05 33.2 3.5 35 45-84 179-213 (232)
493 3c7j_A Transcriptional regulat 75.3 2.3 8E-05 33.9 3.6 37 43-84 46-82 (237)
494 3la7_A Global nitrogen regulat 74.6 2.2 7.5E-05 33.6 3.3 34 46-84 193-226 (243)
495 3b02_A Transcriptional regulat 74.6 1.6 5.5E-05 33.1 2.4 34 46-84 139-172 (195)
496 3fx3_A Cyclic nucleotide-bindi 74.4 1.9 6.5E-05 33.6 2.9 30 46-80 178-207 (237)
497 1zyb_A Transcription regulator 74.4 2.3 7.8E-05 33.2 3.3 34 46-84 186-219 (232)
498 3ryp_A Catabolite gene activat 74.3 2 6.9E-05 32.7 2.9 34 46-84 167-200 (210)
499 3iwz_A CAP-like, catabolite ac 74.1 2 6.9E-05 33.2 2.9 34 46-84 187-220 (230)
500 1cf7_A Protein (transcription 73.8 2.1 7.1E-05 28.1 2.4 36 45-84 29-64 (76)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=4.3e-41 Score=293.96 Aligned_cols=218 Identities=21% Similarity=0.320 Sum_probs=193.3
Q ss_pred CCcccccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCc
Q 047000 1 MANEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSA 80 (231)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~ 80 (231)
|++. .++++..|++++.||+.+++|++|++|||||+|.+.+ +|+|++|||+++| + +++.++|+||+|++.|+
T Consensus 1 M~~~-e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g-~----~~~~l~rlLr~L~~~gl 72 (353)
T 4a6d_A 1 MGSS-EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVR-A----SAHGTELLLDICVSLKL 72 (353)
T ss_dssp CCTT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTS
T ss_pred CCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhC-c----CHHHHHHHHHHHHHCCC
Confidence 5553 4588899999999999999999999999999999854 6999999999999 9 99999999999999999
Q ss_pred ccccccCCCCcCcccccchhhc-cccCCCCCC--------------chhhHHHHHhcCCChhhhhcC---CCccccCCCC
Q 047000 81 VECSIDDADDSQRLYGLNDVSN-YFVPNKDGS--------------YRSQLKEAITEGGVPFDRVHG---THAFEYPGLD 142 (231)
Q Consensus 81 l~~~~~~~~~~~~~y~~t~~s~-~L~~~~~~~--------------~~~~L~~~l~~g~~~~~~~~g---~~~~~~l~~~ 142 (231)
|++..+.+ .+.|++|+.++ +|.++++.+ .|.+|.+++++|+++|...+| .++|+++.++
T Consensus 73 l~~~~~~~---~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~ 149 (353)
T 4a6d_A 73 LKVETRGG---KAFYRNTELSSDYLTTVSPTSQCSMLKYMGRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRS 149 (353)
T ss_dssp EEEEEETT---EEEEEECHHHHHHHSTTSTTCCHHHHHHHHHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSS
T ss_pred EEEeccCc---cceeeCCHHHHHHhhcCCchHHHHHHHHhCHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhC
Confidence 98643222 46899999997 677776644 188999999999999998888 3578999999
Q ss_pred chHHHHHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC------CC
Q 047000 143 PRFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK------YP 216 (231)
Q Consensus 143 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~------~~ 216 (231)
|+....|+++|...+...++.+++.++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.+++ .+
T Consensus 150 ~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~ 228 (353)
T 4a6d_A 150 EGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEE 228 (353)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccC
Confidence 999999999999998888889999999 99999999999999999999999999999999999999988764 28
Q ss_pred CceEeecCCCCCCC
Q 047000 217 GVEHVGGDMFQNVP 230 (231)
Q Consensus 217 ri~~~~gDff~~~P 230 (231)
||++++||||++.+
T Consensus 229 rv~~~~gD~~~~~~ 242 (353)
T 4a6d_A 229 QIDFQEGDFFKDPL 242 (353)
T ss_dssp SEEEEESCTTTSCC
T ss_pred ceeeecCccccCCC
Confidence 99999999998743
No 2
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=2.9e-38 Score=277.45 Aligned_cols=228 Identities=50% Similarity=0.827 Sum_probs=195.6
Q ss_pred cccccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhc-CCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcc
Q 047000 3 NEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKA-GPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAV 81 (231)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~-g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l 81 (231)
+.++.+++..+++++.+++.+++|++|++|||||+|.+. |+++|+|++|||++++ ..++.++..|+||||+|++.|+|
T Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~-~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 15 HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLP-TTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp --CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSS-CCCTTHHHHHHHHHHHHHHTTSE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcC-cCCCcchhhHHHHHHHHHhCCCe
Confidence 346788999999999999999999999999999999986 5557899999999996 42232345999999999999999
Q ss_pred cccccCCCCc--CcccccchhhccccCCC-CCC---------------chhhHHHHHhcCCChhhhhcCCCccccCCCCc
Q 047000 82 ECSIDDADDS--QRLYGLNDVSNYFVPNK-DGS---------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDP 143 (231)
Q Consensus 82 ~~~~~~~~~~--~~~y~~t~~s~~L~~~~-~~~---------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~ 143 (231)
++...+.+++ +++|++|+.++.|..+. +.+ .|.+|.+++++|.++|+..+|.++|+|+.++|
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~ 173 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDH 173 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCH
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCH
Confidence 9841000000 26899999999776553 322 28899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEeec
Q 047000 144 RFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGG 223 (231)
Q Consensus 144 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~g 223 (231)
+..+.|+++|...+....+.+++.++.|++..+|||||||+|.++..+++++|+++++++|+|++++.++..+||+++.+
T Consensus 174 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 253 (368)
T 3reo_A 174 RINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGG 253 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEec
Confidence 99999999999988877788888887688889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 047000 224 DMFQNVPK 231 (231)
Q Consensus 224 Dff~~~P~ 231 (231)
|||+++|+
T Consensus 254 d~~~~~p~ 261 (368)
T 3reo_A 254 DMFDGVPK 261 (368)
T ss_dssp CTTTCCCC
T ss_pred CCCCCCCC
Confidence 99998874
No 3
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=4.3e-38 Score=276.01 Aligned_cols=226 Identities=49% Similarity=0.894 Sum_probs=195.6
Q ss_pred ccccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCC-CCCCCcchHHHHHHHHHhCCccc
Q 047000 4 EGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPAT-KNKDAPMMLDRMLRLLASHSAVE 82 (231)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~-~~~~~~~~l~rlL~~L~~~g~l~ 82 (231)
.++++++..+++++++++.+++|++|++|||||+|.+.| ++|+|++|||++++ + .++.++..|+||||+|++.|+|+
T Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g-~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 15 SADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLP-SAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTT-CTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcC-CCCCccchhhHHHHHHHHHhCCCEE
Confidence 457889999999999999999999999999999999853 25999999999999 5 12223349999999999999999
Q ss_pred ccccCCCCc--CcccccchhhccccCCC-CCC---------------chhhHHHHHhcCCChhhhhcCCCccccCCCCch
Q 047000 83 CSIDDADDS--QRLYGLNDVSNYFVPNK-DGS---------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPR 144 (231)
Q Consensus 83 ~~~~~~~~~--~~~y~~t~~s~~L~~~~-~~~---------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~ 144 (231)
+...+++++ +++|++|+.+++|+.+. +.+ .|.+|.+++++|.++|+..+|.++|+|+.++|+
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~ 172 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPR 172 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHH
Confidence 842100000 26899999999887654 222 288999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEeecC
Q 047000 145 FNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGD 224 (231)
Q Consensus 145 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD 224 (231)
..+.|+++|...+....+.+++.++.|++..+|||||||+|.++..+++++|+++++++|+|++++.++..+||+++.+|
T Consensus 173 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (364)
T 3p9c_A 173 FNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD 252 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence 99999999999888877889998876888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 047000 225 MFQNVPK 231 (231)
Q Consensus 225 ff~~~P~ 231 (231)
||+++|+
T Consensus 253 ~~~~~p~ 259 (364)
T 3p9c_A 253 MFKEVPS 259 (364)
T ss_dssp TTTCCCC
T ss_pred cCCCCCC
Confidence 9998874
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=2.8e-36 Score=262.72 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=189.8
Q ss_pred cccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 5 GRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
...++...++++++|++.+++|++|+++||||+|.+ +|+|++|||+++| + +++.|+||||+|++.|+|++.
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g-~----~~~~l~rlLr~l~~~g~l~~~ 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATG-T----DADALRRVLRLLAVRDVVRES 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHhCCCEEec
Confidence 346788899999999999999999999999999986 6999999999999 9 999999999999999999982
Q ss_pred ccCCCCcCcccccchhhccccCCCCCC---------------chhhHHHHHhcCCChhhhhcCCCccccCCCCchHHHHH
Q 047000 85 IDDADDSQRLYGLNDVSNYFVPNKDGS---------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVF 149 (231)
Q Consensus 85 ~~~~~~~~~~y~~t~~s~~L~~~~~~~---------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~~~~~f 149 (231)
+++|++|+.++.|.++++.+ .|.+|++++++|+++|+..+|.++|+|+.++|+..+.|
T Consensus 89 -------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f 161 (348)
T 3lst_A 89 -------DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALY 161 (348)
T ss_dssp -------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHH
T ss_pred -------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHH
Confidence 68999999999887765432 17889999999999999999999999999999999999
Q ss_pred HHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-----CCCceEeecC
Q 047000 150 NIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-----YPGVEHVGGD 224 (231)
Q Consensus 150 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-----~~ri~~~~gD 224 (231)
+.+|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|+++...+. .+||+++.+|
T Consensus 162 ~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d 240 (348)
T 3lst_A 162 YEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGD 240 (348)
T ss_dssp HHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECC
T ss_pred HHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecC
Confidence 99999998888888999999 99999999999999999999999999999999999999883322 2689999999
Q ss_pred CCCCCC
Q 047000 225 MFQNVP 230 (231)
Q Consensus 225 ff~~~P 230 (231)
+|+++|
T Consensus 241 ~~~~~p 246 (348)
T 3lst_A 241 FLREVP 246 (348)
T ss_dssp TTTCCC
T ss_pred CCCCCC
Confidence 998777
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=7.6e-36 Score=262.01 Aligned_cols=209 Identities=25% Similarity=0.413 Sum_probs=191.0
Q ss_pred ccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccc
Q 047000 6 RDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
..+...++++++.+++.+++|++|+++||||.|++ +|+|++|||+++| + +++.++||||+|++.|+|++.
T Consensus 35 ~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g-~----~~~~l~rlLr~L~~~g~l~~~- 104 (369)
T 3gwz_A 35 RAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATG-A----HEQTLRRLLRLLATVGVFDDL- 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSSEEC-
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHhCCCEEEe-
Confidence 35677889999999999999999999999999996 6999999999999 9 999999999999999999984
Q ss_pred cCCCCcCcc-cccchhhccccCCCCCC---------------chhhHHHHHhcCCChhhhhcCCCccccCCCCchHHHHH
Q 047000 86 DDADDSQRL-YGLNDVSNYFVPNKDGS---------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVF 149 (231)
Q Consensus 86 ~~~~~~~~~-y~~t~~s~~L~~~~~~~---------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~~~~~f 149 (231)
. ++. |.+|+.++.|.++.+.+ .|.+|.+++++|+++|...+|.++|+|+.++|+..+.|
T Consensus 105 --~---~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f 179 (369)
T 3gwz_A 105 --G---HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELF 179 (369)
T ss_dssp --S---STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred --C---CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHH
Confidence 2 678 99999999887766532 17889999999999999999989999999999999999
Q ss_pred HHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEee
Q 047000 150 NIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-------YPGVEHVG 222 (231)
Q Consensus 150 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~ 222 (231)
+.+|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.
T Consensus 180 ~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~ 258 (369)
T 3gwz_A 180 NRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILP 258 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEec
Confidence 99999988888888999998 99999999999999999999999999999999999999988875 37899999
Q ss_pred cCCCCCCC
Q 047000 223 GDMFQNVP 230 (231)
Q Consensus 223 gDff~~~P 230 (231)
+|||+++|
T Consensus 259 ~d~~~~~p 266 (369)
T 3gwz_A 259 GDFFETIP 266 (369)
T ss_dssp CCTTTCCC
T ss_pred cCCCCCCC
Confidence 99998887
No 6
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=2.9e-35 Score=256.61 Aligned_cols=220 Identities=26% Similarity=0.380 Sum_probs=193.3
Q ss_pred CcccccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcc
Q 047000 2 ANEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAV 81 (231)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l 81 (231)
.+.++.++...+++++.+++.+++|++++++|||+.|+..+ +|+|++|||++++ + +|.+++.++||||+|++.|+|
T Consensus 9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~-~-~~~~~~~l~rlLr~L~~~gll 84 (352)
T 1fp2_A 9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQ-V-PSSKIGNVRRLMRYLAHNGFF 84 (352)
T ss_dssp CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHT-C-CGGGHHHHHHHHHHHHHTTSE
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhC-c-CCCChHHHHHHHHHHHhCCeE
Confidence 34567888999999999999999999999999999999853 5999999999999 8 222377999999999999999
Q ss_pred cccccCCCCcCcccccchhhccccCCCCCC---------------chhhHHHHHh-cCCChhhhhcCCCccccCCCCchH
Q 047000 82 ECSIDDADDSQRLYGLNDVSNYFVPNKDGS---------------YRSQLKEAIT-EGGVPFDRVHGTHAFEYPGLDPRF 145 (231)
Q Consensus 82 ~~~~~~~~~~~~~y~~t~~s~~L~~~~~~~---------------~~~~L~~~l~-~g~~~~~~~~g~~~~~~l~~~~~~ 145 (231)
++.+ ++ ++.|++|+.+++|+++.+.+ .|.+|+++++ +|+++|+..+|.++|+|+.++|+.
T Consensus 85 ~~~~-~~---~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~ 160 (352)
T 1fp2_A 85 EIIT-KE---EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEY 160 (352)
T ss_dssp EEEE-SS---SEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHH
T ss_pred EEec-CC---CCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHH
Confidence 9841 02 58999999999888776432 2789999999 888999999999999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHhC--CCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEeec
Q 047000 146 NEVFNIAMYNYTNLVIQKILEAY--KGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGG 223 (231)
Q Consensus 146 ~~~f~~~m~~~~~~~~~~~~~~~--~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~g 223 (231)
.+.|+.+|...+....+. ++.| + |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+
T Consensus 161 ~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 238 (352)
T 1fp2_A 161 NTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGG 238 (352)
T ss_dssp HHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEEC
T ss_pred HHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEec
Confidence 999999999988776666 7777 5 77889999999999999999999999999999999999999998888999999
Q ss_pred CCCCCCCC
Q 047000 224 DMFQNVPK 231 (231)
Q Consensus 224 Dff~~~P~ 231 (231)
|+|+++|.
T Consensus 239 d~~~~~p~ 246 (352)
T 1fp2_A 239 DMFTSIPN 246 (352)
T ss_dssp CTTTCCCC
T ss_pred cccCCCCC
Confidence 99998773
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=3.9e-35 Score=256.28 Aligned_cols=222 Identities=27% Similarity=0.419 Sum_probs=192.1
Q ss_pred cccccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccc
Q 047000 3 NEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVE 82 (231)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~ 82 (231)
+.+..++...+++++++++.+++|++|+++||||.|+..| +|+|++|||+++| + ++.+++.|+||||+|++.|+|+
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g-~-~~~~~~~l~rlLr~L~~~gll~ 79 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLK-L-HPSKVNILHRFLRLLTHNGFFA 79 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTT-C-CTTTHHHHHHHHHHHHHTTSEE
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcC-C-CCcchHHHHHHHHHHhhCCcEE
Confidence 3567888899999999999999999999999999999853 5999999999999 8 3334789999999999999999
Q ss_pred ccc----c-CCCCcCcccccchhhccccCCCCCC---------------chhhHHHHHhcC--CChhhhhcCCCccccCC
Q 047000 83 CSI----D-DADDSQRLYGLNDVSNYFVPNKDGS---------------YRSQLKEAITEG--GVPFDRVHGTHAFEYPG 140 (231)
Q Consensus 83 ~~~----~-~~~~~~~~y~~t~~s~~L~~~~~~~---------------~~~~L~~~l~~g--~~~~~~~~g~~~~~~l~ 140 (231)
+.. . ++. .++.|++|+.+++|+++++.+ .|.+|++++++| .++|+..+|.++|+|+.
T Consensus 80 ~~~~~~~~~~g~-~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~ 158 (358)
T 1zg3_A 80 KTIVKGKEGDEE-EEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLN 158 (358)
T ss_dssp EEEECCSSSSCC-CEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHT
T ss_pred EecccccccCCC-CCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHh
Confidence 841 0 000 026899999999888776432 278999999998 78899999999999999
Q ss_pred CCchHHH--HHHHHHHhchhhhHHHHHHhCC-CCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCCCC
Q 047000 141 LDPRFNE--VFNIAMYNYTNLVIQKILEAYK-GFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPG 217 (231)
Q Consensus 141 ~~~~~~~--~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~r 217 (231)
++|+..+ .|+.+|...+.... .+++.++ .|++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++
T Consensus 159 ~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 237 (358)
T 1zg3_A 159 KDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNEN 237 (358)
T ss_dssp SGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSS
T ss_pred cChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCC
Confidence 9999999 99999998887666 7888882 277889999999999999999999999999999999999999998888
Q ss_pred ceEeecCCCCCCC
Q 047000 218 VEHVGGDMFQNVP 230 (231)
Q Consensus 218 i~~~~gDff~~~P 230 (231)
|+++.+|||+++|
T Consensus 238 v~~~~~d~~~~~~ 250 (358)
T 1zg3_A 238 LNFVGGDMFKSIP 250 (358)
T ss_dssp EEEEECCTTTCCC
T ss_pred cEEEeCccCCCCC
Confidence 9999999999876
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=2.7e-34 Score=252.28 Aligned_cols=226 Identities=47% Similarity=0.768 Sum_probs=179.8
Q ss_pred ccccHHHHHHH--HHHhhchHHHHHHHHHhhChHHHHHhcC-CCCCCCHHHHHHhCCCCC--CCCCcchHHHHHHHHHhC
Q 047000 4 EGRDESFAYAN--QLVTASVLPMAMQAVIGLGVFEIIAKAG-PGAKLSASEIAAQLPATK--NKDAPMMLDRMLRLLASH 78 (231)
Q Consensus 4 ~~~~~~~~~l~--~~~~~~~~~~~L~~a~~lglfd~L~~~g-~~~~~t~~eLA~~~g~~~--~~~~~~~l~rlL~~L~~~ 78 (231)
++..++...++ +++.+++.+++|++|+++||||.|++.| +++++|++|||++++ +. +|.+++.|+||||+|++.
T Consensus 17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~-~~~~~~~~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLP-ASTQHSDLPNRLDRMLRLLASY 95 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSC-GGGCCTTHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcC-CCCCCCcChHHHHHHHHHHhhC
Confidence 34567777888 9999999999999999999999999753 112299999999999 62 444688999999999999
Q ss_pred CcccccccC-CCCc--CcccccchhhccccCCCC-CC---------------chhhHHHHHhcC-CChhhhhcCCCcccc
Q 047000 79 SAVECSIDD-ADDS--QRLYGLNDVSNYFVPNKD-GS---------------YRSQLKEAITEG-GVPFDRVHGTHAFEY 138 (231)
Q Consensus 79 g~l~~~~~~-~~~~--~~~y~~t~~s~~L~~~~~-~~---------------~~~~L~~~l~~g-~~~~~~~~g~~~~~~ 138 (231)
|+|++.... . ++ ++.|++|+.+++|+++++ .+ .|.+|++++++| +++|+..+|.++|+|
T Consensus 96 gll~~~~~~~~-~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~ 174 (372)
T 1fp1_D 96 SVLTSTTRTIE-DGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEF 174 (372)
T ss_dssp TSEEEEEEECT-TSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------C
T ss_pred CceEecccccC-CCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHH
Confidence 999984100 0 00 158999999998887765 21 178999999998 889999999999999
Q ss_pred CCCCchHHHHHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCc
Q 047000 139 PGLDPRFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGV 218 (231)
Q Consensus 139 l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri 218 (231)
+.++|+..+.|+.+|...+....+.+++.++.|++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++|
T Consensus 175 ~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v 254 (372)
T 1fp1_D 175 MGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGI 254 (372)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTE
T ss_pred HHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCC
Confidence 99999999999999999888777888888866888899999999999999999999999999999999999999988899
Q ss_pred eEeecCCCCCCCC
Q 047000 219 EHVGGDMFQNVPK 231 (231)
Q Consensus 219 ~~~~gDff~~~P~ 231 (231)
+++.+|+++++|.
T Consensus 255 ~~~~~d~~~~~~~ 267 (372)
T 1fp1_D 255 EHVGGDMFASVPQ 267 (372)
T ss_dssp EEEECCTTTCCCC
T ss_pred EEEeCCcccCCCC
Confidence 9999999998773
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=1.9e-35 Score=255.69 Aligned_cols=204 Identities=25% Similarity=0.340 Sum_probs=184.6
Q ss_pred HHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCC
Q 047000 11 AYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADD 90 (231)
Q Consensus 11 ~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~ 90 (231)
..+++++.|++.+++|++|+++||||+|.+ +|+|++|||+++| + +++.++||||+|++.|+|++. +
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~-~----~~~~l~rlLr~l~~~gl~~~~---~-- 72 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAG-A----HADSLDRLLRHLVAVGLFTRD---G-- 72 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEC---T--
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHhCCcEEec---C--
Confidence 357889999999999999999999999986 6999999999999 9 999999999999999999984 2
Q ss_pred cCcccccchhhccccCCCCCC----------------chhhHHHHHhcCCChhhhhcCCCccccCCCCchHHHHHHHHHH
Q 047000 91 SQRLYGLNDVSNYFVPNKDGS----------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMY 154 (231)
Q Consensus 91 ~~~~y~~t~~s~~L~~~~~~~----------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~~~~~f~~~m~ 154 (231)
++.|.+|+.++.|..+.+.+ .|.+|.+++++|+++|+..+|.++|+|+.++|+..+.|+.+|.
T Consensus 73 -~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 151 (332)
T 3i53_A 73 -QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMS 151 (332)
T ss_dssp -TSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred -CCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHH
Confidence 68999999999777665421 2678999999999999999998999999999999999999999
Q ss_pred hchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEeecCCCC
Q 047000 155 NYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
..+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+|+
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 230 (332)
T 3i53_A 152 HHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD 230 (332)
T ss_dssp HHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCC
Confidence 988777777888888 88899999999999999999999999999999999999998874 2789999999998
Q ss_pred CCC
Q 047000 228 NVP 230 (231)
Q Consensus 228 ~~P 230 (231)
++|
T Consensus 231 ~~p 233 (332)
T 3i53_A 231 PLP 233 (332)
T ss_dssp CCC
T ss_pred CCC
Confidence 887
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.6e-35 Score=252.18 Aligned_cols=210 Identities=26% Similarity=0.352 Sum_probs=186.2
Q ss_pred CCcccccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCc
Q 047000 1 MANEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSA 80 (231)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~ 80 (231)
|++..+ .+...+++++++++.+++|++++++|||+.|.+ +|+|++|||+++| + +++.++|+||+|++.|+
T Consensus 1 ~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~-~----~~~~l~r~Lr~L~~~g~ 70 (334)
T 2ip2_A 1 MNNSNL-AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVG-S----DAERIHRLMRLLVAFEI 70 (334)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHT-C----CHHHHHHHHHHHHHTTS
T ss_pred CCCCcc-ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHhCCc
Confidence 444444 677889999999999999999999999999986 6999999999999 9 99999999999999999
Q ss_pred ccccccCCCCcCcccccchhhccccCCCCCC--------------chhhHHHHHhcCCChhhhhcCCCccccCCCCchHH
Q 047000 81 VECSIDDADDSQRLYGLNDVSNYFVPNKDGS--------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFN 146 (231)
Q Consensus 81 l~~~~~~~~~~~~~y~~t~~s~~L~~~~~~~--------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~~~ 146 (231)
|++. + ++.|++|+.++.|. +.+.+ .|.+|.+++++|+++|+..+|.++|+|+.++|+..
T Consensus 71 l~~~---~---~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 143 (334)
T 2ip2_A 71 FQGD---T---RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAG 143 (334)
T ss_dssp EEEE---T---TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHHHHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHH
T ss_pred eEec---C---CCeEecCHHHHHHh-CCCccHHHHHHHhcCchhhHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHH
Confidence 9984 2 58999999999877 54422 27889999999999999899999999999999999
Q ss_pred HHHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCce
Q 047000 147 EVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY-------PGVE 219 (231)
Q Consensus 147 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~ 219 (231)
+.|+.+| ..+....+.+++.++ |++ .+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||+
T Consensus 144 ~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 220 (334)
T 2ip2_A 144 RRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVS 220 (334)
T ss_dssp HHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEE
T ss_pred HHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEE
Confidence 9999999 887777788899998 888 99999999999999999999999999999999898887652 6899
Q ss_pred EeecCCCCCCC
Q 047000 220 HVGGDMFQNVP 230 (231)
Q Consensus 220 ~~~gDff~~~P 230 (231)
++.+|+++++|
T Consensus 221 ~~~~d~~~~~~ 231 (334)
T 2ip2_A 221 LVGGDMLQEVP 231 (334)
T ss_dssp EEESCTTTCCC
T ss_pred EecCCCCCCCC
Confidence 99999999776
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=2e-34 Score=252.42 Aligned_cols=207 Identities=16% Similarity=0.205 Sum_probs=176.5
Q ss_pred ccccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 4 EGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
.+..++...++++++|++.+++|++++++||||+|++.+ +|+|++|||+++| + +++.++||||+|++.|+|++
T Consensus 10 ~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g-~----~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 10 CTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTG-L----TRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhC-c----CHHHHHHHHHHHhhCCCeEe
Confidence 446788999999999999999999999999999999843 6999999999999 9 99999999999999999987
Q ss_pred cccCCCCcCcccccchhhccccCCCCCC------------chhhHHHHHhcCCChhhhhcC--CCccccCCCCchHHH--
Q 047000 84 SIDDADDSQRLYGLNDVSNYFVPNKDGS------------YRSQLKEAITEGGVPFDRVHG--THAFEYPGLDPRFNE-- 147 (231)
Q Consensus 84 ~~~~~~~~~~~y~~t~~s~~L~~~~~~~------------~~~~L~~~l~~g~~~~~~~~g--~~~~~~l~~~~~~~~-- 147 (231)
. +++|++|+.+++|+++++.+ .|.+|++++++|++++...+| .++|+++.++|+..+
T Consensus 83 ~-------~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 155 (363)
T 3dp7_A 83 E-------EDRYVLAKAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKS 155 (363)
T ss_dssp E-------TTEEEECHHHHHHHHCHHHHHHHHHHHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHH
T ss_pred c-------CCEEecccchHHhhCCCcccchheeecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHH
Confidence 3 68999999999888765321 288999999999988888888 689999999998765
Q ss_pred --HHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCc
Q 047000 148 --VFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY-------PGV 218 (231)
Q Consensus 148 --~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri 218 (231)
.|+.+|.... ...+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||
T Consensus 156 ~~~f~~~~~~~~---~~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (363)
T 3dp7_A 156 WFGFDHFYSDQS---FGKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERI 231 (363)
T ss_dssp HHHHHHHTTCCC---CHHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGE
T ss_pred HHHHHHHhhhhh---HHHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccce
Confidence 3566655433 223444433 356789999999999999999999999999999999999887652 689
Q ss_pred eEeecCCCCC
Q 047000 219 EHVGGDMFQN 228 (231)
Q Consensus 219 ~~~~gDff~~ 228 (231)
+++.+|+|++
T Consensus 232 ~~~~~d~~~~ 241 (363)
T 3dp7_A 232 HGHGANLLDR 241 (363)
T ss_dssp EEEECCCCSS
T ss_pred EEEEcccccc
Confidence 9999999996
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.98 E-value=4.2e-32 Score=237.82 Aligned_cols=209 Identities=20% Similarity=0.314 Sum_probs=186.4
Q ss_pred cHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccccc
Q 047000 7 DESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSID 86 (231)
Q Consensus 7 ~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~ 86 (231)
++....+++++.+++.+++|++++++|||+.|.. +|+|++|||+++| + +++.++|+||+|++.|+|++.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g-~----~~~~l~r~Lr~L~~~Gll~~~-- 82 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTD-T----HPQALSRLVRHLTVVGVLEGG-- 82 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEECC--
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhC-c----CHHHHHHHHHHHhhCCCEEEe--
Confidence 5667789999999999999999999999999965 6999999999999 9 999999999999999999984
Q ss_pred CCCCcCc--ccccchhhccccCCCCCC----------------chhhHHHHHhcCCChhhhhcCCCccccCCCCchHHHH
Q 047000 87 DADDSQR--LYGLNDVSNYFVPNKDGS----------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEV 148 (231)
Q Consensus 87 ~~~~~~~--~y~~t~~s~~L~~~~~~~----------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~~~~~ 148 (231)
. ++ .|.+|+.+.+|+.+.+.+ .|.+|.+++++|.++|...+|.++|+++..+|+..+.
T Consensus 83 -~---~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (374)
T 1qzz_A 83 -E---KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADS 158 (374)
T ss_dssp -C---C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred -C---CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHH
Confidence 2 56 999999999888765422 2578899999999999999999999999889999999
Q ss_pred HHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEe
Q 047000 149 FNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY-------PGVEHV 221 (231)
Q Consensus 149 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~ 221 (231)
|+.+|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||+++
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 237 (374)
T 1qzz_A 159 FDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 237 (374)
T ss_dssp HHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEE
Confidence 999999887777778889888 888899999999999999999999999999999999899887652 589999
Q ss_pred ecCCCCCCCC
Q 047000 222 GGDMFQNVPK 231 (231)
Q Consensus 222 ~gDff~~~P~ 231 (231)
.+|+++++|.
T Consensus 238 ~~d~~~~~~~ 247 (374)
T 1qzz_A 238 EGDFFKPLPV 247 (374)
T ss_dssp ECCTTSCCSC
T ss_pred eCCCCCcCCC
Confidence 9999987763
No 13
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.97 E-value=2.6e-31 Score=232.09 Aligned_cols=201 Identities=20% Similarity=0.335 Sum_probs=177.6
Q ss_pred CCcccccHHHHHHHHHHh-hchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCC
Q 047000 1 MANEGRDESFAYANQLVT-ASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHS 79 (231)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~-~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g 79 (231)
|.+.++.++..++++++. |++.+++|++++++||||.|.+ +|+|++|||+++| + +++.++||||+|++.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g-~----~~~~l~rlLr~L~~~g 92 (359)
T 1x19_A 22 MSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTG-S----VPPRLEMLLETLRQMR 92 (359)
T ss_dssp ECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTT
T ss_pred CCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhC-c----ChHHHHHHHHHHHhCC
Confidence 456677888899999986 8999999999999999999997 5999999999999 9 9999999999999999
Q ss_pred cccccccCCCCcCcccccchhh-ccccCCCC---CC--------------chhhHHHHHhcCCChhhhhcCCCccccCCC
Q 047000 80 AVECSIDDADDSQRLYGLNDVS-NYFVPNKD---GS--------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGL 141 (231)
Q Consensus 80 ~l~~~~~~~~~~~~~y~~t~~s-~~L~~~~~---~~--------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~ 141 (231)
+|++. ++.|++|+.+ .+|.++++ .+ .|.+|++++++|.+ |+|+.+
T Consensus 93 ll~~~-------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~----------~~~~~~ 155 (359)
T 1x19_A 93 VINLE-------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKN----------FKGQVP 155 (359)
T ss_dssp SEEEE-------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHHHHHHHHTGGGHHHHHTTSCC----------CCCSSC
T ss_pred CeEee-------CCeEecCHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------Cccccc
Confidence 99984 5799999975 57877665 22 27788888887653 788888
Q ss_pred Cch---HHHHHHHHHHhchh-hhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC---
Q 047000 142 DPR---FNEVFNIAMYNYTN-LVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK--- 214 (231)
Q Consensus 142 ~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~--- 214 (231)
+|+ ..+.|..+|...+. ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 156 ~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 234 (359)
T 1x19_A 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAA 234 (359)
T ss_dssp SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHH
Confidence 999 89999999999887 77788999998 88899999999999999999999999999999999999988764
Q ss_pred ----CCCceEeecCCCCC
Q 047000 215 ----YPGVEHVGGDMFQN 228 (231)
Q Consensus 215 ----~~ri~~~~gDff~~ 228 (231)
.+||+++.+|+++.
T Consensus 235 ~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 235 EKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp HTTCTTTEEEEECCTTTS
T ss_pred hcCCCCCEEEEeCccccC
Confidence 26799999999985
No 14
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.97 E-value=2.5e-31 Score=231.92 Aligned_cols=207 Identities=20% Similarity=0.342 Sum_probs=185.6
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCC
Q 047000 9 SFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDA 88 (231)
Q Consensus 9 ~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~ 88 (231)
...++++++.+++.+++|.+++++|||+.|.. +|+|++|||++++ + ++..+.|+||+|++.|+|++. .
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~-~----~~~~l~r~L~~L~~~g~~~~~---~ 86 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTD-T----RPEALLRLIRHLVAIGLLEED---A 86 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE---E
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHHCCCEEec---C
Confidence 35778999999999999999999999999965 6999999999999 9 999999999999999999984 2
Q ss_pred CCcCcccccchhhccccCCCCCC----------------chhhHHHHHhcCCChhhhhcCCCccccCCCCchHHHHHHHH
Q 047000 89 DDSQRLYGLNDVSNYFVPNKDGS----------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIA 152 (231)
Q Consensus 89 ~~~~~~y~~t~~s~~L~~~~~~~----------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~~~~~f~~~ 152 (231)
+++|++|+.+.+|+++.+.+ .|.+|.+.+++|.++|+..+|.++|+++..+|+..+.|..+
T Consensus 87 ---~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~ 163 (360)
T 1tw3_A 87 ---PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSL 163 (360)
T ss_dssp ---TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHH
T ss_pred ---CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHH
Confidence 68999999999888775422 26788999999999999889999999998999999999999
Q ss_pred HHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEeecCC
Q 047000 153 MYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY-------PGVEHVGGDM 225 (231)
Q Consensus 153 m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~gDf 225 (231)
|...+....+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||+++.+|+
T Consensus 164 ~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 242 (360)
T 1tw3_A 164 LACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 242 (360)
T ss_dssp HTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 99888777778889998 888899999999999999999999999999999999898887642 4899999999
Q ss_pred CCCCCC
Q 047000 226 FQNVPK 231 (231)
Q Consensus 226 f~~~P~ 231 (231)
++++|.
T Consensus 243 ~~~~~~ 248 (360)
T 1tw3_A 243 FEPLPR 248 (360)
T ss_dssp TSCCSS
T ss_pred CCCCCC
Confidence 987763
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.97 E-value=6.7e-30 Score=220.45 Aligned_cols=195 Identities=17% Similarity=0.128 Sum_probs=173.4
Q ss_pred HHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCC
Q 047000 11 AYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADD 90 (231)
Q Consensus 11 ~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~ 90 (231)
..+++++.+++.+++|++++++|||+.|++ +|+|++|||+++| + +++.++|+||+|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~-~----~~~~l~r~L~~L~~~g~l~~~------ 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQ-T----SERGMRMLCDYLVIIGFMTKQ------ 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhC-C----CchHHHHHHHHHHhcCCeEec------
Confidence 578899999999999999999999999997 5999999999999 9 999999999999999999872
Q ss_pred cCcccccchhh-ccccCCCCCC---------------chhhHHHHHhcCCChhhhhcCCCccccCCCCchHHHHHHHHHH
Q 047000 91 SQRLYGLNDVS-NYFVPNKDGS---------------YRSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMY 154 (231)
Q Consensus 91 ~~~~y~~t~~s-~~L~~~~~~~---------------~~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~~~~~f~~~m~ 154 (231)
++.|++|+.+ .+|.++++.+ .|.+|.+++++|.++|+ + |+++.++++..+.|...|.
T Consensus 73 -~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~ 145 (335)
T 2r3s_A 73 -AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMS 145 (335)
T ss_dssp -TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSG
T ss_pred -CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHH
Confidence 6899999999 5887765432 27889999998887664 3 8888889999999999999
Q ss_pred hchhhhHHHHHHhCCCC--CCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEeecCC
Q 047000 155 NYTNLVIQKILEAYKGF--EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY-------PGVEHVGGDM 225 (231)
Q Consensus 155 ~~~~~~~~~~~~~~~~~--~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~gDf 225 (231)
.........+++.++ + .+..+|||||||+|.++..+++++|+.+++++|++.+++.+++. +||+++.+|+
T Consensus 146 ~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 146 PMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp GGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred HHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 888777778888888 7 78899999999999999999999999999999999888887652 5899999999
Q ss_pred CCC
Q 047000 226 FQN 228 (231)
Q Consensus 226 f~~ 228 (231)
++.
T Consensus 225 ~~~ 227 (335)
T 2r3s_A 225 FEV 227 (335)
T ss_dssp TTS
T ss_pred ccC
Confidence 984
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.97 E-value=4.1e-30 Score=223.62 Aligned_cols=202 Identities=16% Similarity=0.207 Sum_probs=169.0
Q ss_pred cccccHHHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccc
Q 047000 3 NEGRDESFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVE 82 (231)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~ 82 (231)
|....+....+++++.+++.+++|++|+++||||+|.. |+|++|||+++| + +++.++||||+|++.|+|+
T Consensus 18 ~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~-~----~~~~l~rlLr~L~~~gll~ 87 (352)
T 3mcz_A 18 DKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFG-M----VEGKAAILLHALAALGLLT 87 (352)
T ss_dssp SCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhC-c----ChHHHHHHHHHHHHCCCeE
Confidence 33344445559999999999999999999999999953 899999999999 9 9999999999999999999
Q ss_pred ccccCCCCcCcccccchhhc-cccCCCCCC-------------chhhHHHHHhcCCCh-hhhhcCCCccccCCCCchHHH
Q 047000 83 CSIDDADDSQRLYGLNDVSN-YFVPNKDGS-------------YRSQLKEAITEGGVP-FDRVHGTHAFEYPGLDPRFNE 147 (231)
Q Consensus 83 ~~~~~~~~~~~~y~~t~~s~-~L~~~~~~~-------------~~~~L~~~l~~g~~~-~~~~~g~~~~~~l~~~~~~~~ 147 (231)
+. +++|.+|+.+. +|.++.+.+ .|.+|.+++++|.+. |+.. .++..+|+..+
T Consensus 88 ~~-------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~ 154 (352)
T 3mcz_A 88 KE-------GDAFRNTALTERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARD 154 (352)
T ss_dssp EE-------TTEEEECHHHHHHHSTTCTTCCHHHHHHHHTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHH
T ss_pred ec-------CCeeecCHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHH
Confidence 84 57899999997 676666543 288999999988654 3322 12357888899
Q ss_pred HHHHHHHhchhhhHHHHHHhCCCCCC-CceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCce
Q 047000 148 VFNIAMYNYTNLVIQKILEAYKGFEH-IQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY-------PGVE 219 (231)
Q Consensus 148 ~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~ 219 (231)
.|..+|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|++++.+++. +||+
T Consensus 155 ~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 232 (352)
T 3mcz_A 155 AFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVE 232 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEE
T ss_pred HHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceE
Confidence 999999884332 237888888 777 899999999999999999999999999999999998877642 6899
Q ss_pred EeecCCCCCC
Q 047000 220 HVGGDMFQNV 229 (231)
Q Consensus 220 ~~~gDff~~~ 229 (231)
++.+|++++.
T Consensus 233 ~~~~d~~~~~ 242 (352)
T 3mcz_A 233 FFEKNLLDAR 242 (352)
T ss_dssp EEECCTTCGG
T ss_pred EEeCCcccCc
Confidence 9999999874
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.23 E-value=3.1e-11 Score=105.56 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=105.7
Q ss_pred ChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhc-cccCCCCCC
Q 047000 33 GVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSN-YFVPNKDGS 111 (231)
Q Consensus 33 glfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~-~L~~~~~~~ 111 (231)
+||..| . +|.|..|||..++ + +++.++++|+.|.+.|+++.. ++ |++|+.+. ++.......
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g-~----~~~~v~~~L~~l~~~gll~~~-------~~-~~lt~~~~~~l~~~~~~~ 108 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSE-E----PLPLVVAILESLNELGYVTFE-------DG-VKLTEKGEELVAEYGIGK 108 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEECS-------SS-SEECHHHHHHHHHHTCCC
T ss_pred HHHHHh-c----CCCCHHHHHHHhC-C----ChHHHHHHHHHHhhCCcEEEC-------CC-EEECHHHHHHHHhcCccc
Confidence 789999 5 4899999999999 9 999999999999999999872 45 99999876 444311100
Q ss_pred --------------c-------hhhHHHHHhcCCChhhhhcCCCccccCCCCchHHHHHHHHHHhchhhhHHHHHHhCCC
Q 047000 112 --------------Y-------RSQLKEAITEGGVPFDRVHGTHAFEYPGLDPRFNEVFNIAMYNYTNLVIQKILEAYKG 170 (231)
Q Consensus 112 --------------~-------~~~L~~~l~~g~~~~~~~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~ 170 (231)
. |..+.+.++....+ ...|+.....+. ......+ ......+
T Consensus 109 ~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~l---------~~~~~~~- 170 (373)
T 2qm3_A 109 RYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP------LHEFDQAYVTPE--TTVARVI---------LMHTRGD- 170 (373)
T ss_dssp CCC------------CGGGHHHHHHHHHHHTTCCCC------CGGGTCCCBCHH--HHHHHHH---------HHHHTTC-
T ss_pred cccccchhhcCCCcchhhhHHHHHHHHHHHhcCCcc------chhcCCeecCHH--HHHHHHH---------HHhhcCC-
Confidence 0 12222333322111 011111000111 1111110 0011112
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~P 230 (231)
....+|+||| |+|.++..+++..|+.+++++|+ |.+++.++++ ++|+++.+|+++++|
T Consensus 171 -~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~ 235 (373)
T 2qm3_A 171 -LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLP 235 (373)
T ss_dssp -STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCC
T ss_pred -CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhch
Confidence 2458999999 99999999999999899999999 7888887653 489999999998655
No 18
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.32 E-value=1.1e-06 Score=69.69 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=55.6
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~P 230 (231)
.++..++ .....+|||||||+|.++..+++.+|..+++.+|. |..++.+++. ++++++.+|+.+..+
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 104 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD 104 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh
Confidence 4455566 66778999999999999999999999999999998 6777777652 789999999976543
No 19
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.30 E-value=2.4e-07 Score=74.20 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=49.8
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
.+.+.+.++ ...+|||||||+|.++..+++.+| +++.+|+ |.+++.++.. .+++++.+|+.+
T Consensus 29 ~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 96 (227)
T 1ve3_A 29 EPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK 96 (227)
T ss_dssp HHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS
T ss_pred HHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc
Confidence 334445443 467999999999999999999988 8899998 6777776652 789999999887
No 20
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.25 E-value=2.1e-06 Score=69.17 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=53.5
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----YPGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gDff~~ 228 (231)
..++..++...+..+|||||||+|.++..+++.+|+.+++++|+ |..++.++. ..+++++.+|+.+.
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 104 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY 104 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc
Confidence 34445444234568999999999999999999999999999999 667766654 35899999999874
No 21
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.17 E-value=6.7e-07 Score=72.74 Aligned_cols=58 Identities=14% Similarity=-0.004 Sum_probs=49.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEeecCCCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY-------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gDff~~~P 230 (231)
+..+|+|||||+|.+++.+++.+|..+++..|.. ..++.|+.+ ++|++..+|.|+++|
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~ 80 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE 80 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc
Confidence 5679999999999999999999999999999984 566666542 689999999998765
No 22
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.16 E-value=1.6e-06 Score=72.11 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=52.0
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCceEeecCCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSK-YPHIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQNVP 230 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~~~P 230 (231)
.++..++ +.+..+|||+|||+|.++..+++. +|..+++.+|+ |..++.+++ .++++++.+|+.++.|
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~ 176 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS 176 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc
Confidence 4555555 677889999999999999999998 89999999999 667766543 2579999999987644
No 23
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.14 E-value=3.3e-06 Score=70.49 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=48.9
Q ss_pred CCceEEEccCCh---hHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCL---GNTLKAITSKYPHIKGINFDL-PHVIQHAPK----YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gDff~ 227 (231)
+..+|||||||+ |.++..+.+.+|+.+++.+|+ |.+++.++. .++++++.+|+++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD 139 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence 568999999999 999988889999999999999 888887764 3789999999986
No 24
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.13 E-value=2.6e-06 Score=70.74 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=47.6
Q ss_pred CCCceEEEccCChhHHHHHHHHHC--CCCeEEEeec-hHHHhhCCC-------CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKY--PHIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
++..+|||||||+|.++..+++++ |+++++.+|+ |..++.|++ ..+|+++.+|+.+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~ 134 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 134 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence 567899999999999999999985 6789999998 667777654 2689999999875
No 25
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.12 E-value=3.1e-06 Score=69.20 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=56.5
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHH-CCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSK-YPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~~P 230 (231)
..++..++ .....+|||+|||+|.++..+++. .|..+++.+|+ |..++.++++ +|++++.+|+.+..|
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 159 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE 159 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence 34556666 677889999999999999999999 89999999999 6777777642 569999999987654
No 26
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.11 E-value=2.6e-06 Score=68.02 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=47.7
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++.+|+.+++.+|. |..++.++.. ++++++.+|+.+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 102 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD 102 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH
Confidence 467899999999999999999999999999998 6677766542 689999999875
No 27
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.11 E-value=4.2e-06 Score=66.82 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=46.8
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechH-HHh----hCCC------CCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPH-VIQ----HAPK------YPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~----~a~~------~~ri~~~~gDff~ 227 (231)
.....+|||||||+|.++..+++.+|+.+++.+|+.+ .++ .++. .++++++.+|+.+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 92 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER 92 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh
Confidence 4567899999999999999999999999999999854 333 2332 2689999999876
No 28
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.10 E-value=2.9e-06 Score=71.27 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=36.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAP 213 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 213 (231)
...+|||||||+|.++..+++++|..+++.+|+ |..++.|+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~ 87 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR 87 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 568999999999999999999999999999998 55666554
No 29
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.08 E-value=6.3e-06 Score=69.70 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=58.0
Q ss_pred HHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCce
Q 047000 148 VFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVE 219 (231)
Q Consensus 148 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~ 219 (231)
.|.+ +..........+++.++.+....+|||||||.|.++..+++++ +.+++.+|+ |..++.+++. ++++
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~ 170 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVR 170 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceE
Confidence 3443 4444333344566655435677899999999999999999986 688999998 6677766542 5899
Q ss_pred EeecCCCC
Q 047000 220 HVGGDMFQ 227 (231)
Q Consensus 220 ~~~gDff~ 227 (231)
++.+|+.+
T Consensus 171 ~~~~d~~~ 178 (312)
T 3vc1_A 171 SRVCNMLD 178 (312)
T ss_dssp EEECCTTS
T ss_pred EEECChhc
Confidence 99999986
No 30
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.07 E-value=1.5e-06 Score=72.93 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=48.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQNV 229 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~~ 229 (231)
...+|+|||||+|.++..+++. |+.+++.+|+ |..++.++.+ +|++++.+|++++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~ 186 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 186 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc
Confidence 3468999999999999999999 9999999998 6777776642 47999999998754
No 31
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.06 E-value=1.6e-06 Score=70.75 Aligned_cols=59 Identities=14% Similarity=-0.059 Sum_probs=49.8
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~~P 230 (231)
.+..+|+|||||+|.+++.+++..|..+++..|. |..++.|+.+ +||+++.+|.++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~ 86 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE 86 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc
Confidence 3568999999999999999999999999999998 4566666542 689999999998654
No 32
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.06 E-value=1.2e-05 Score=63.75 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=51.5
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--CCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY--PGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--~ri~~~~gDff~~ 228 (231)
..+++.+.......+|||||||+|.++..+++. +.+++++|. |..++.++.. ++++++.+|+.+.
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~ 102 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW 102 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC
Confidence 344554443556679999999999999999999 678999998 6677777653 6899999999765
No 33
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.05 E-value=2.7e-06 Score=67.37 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=50.9
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
..+++.++ ..+. +|||||||+|.++..++++ |+.+++.+|. |..++.++.. ++++++.+|+.+
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 34555555 4444 9999999999999999999 8899999998 6677766542 589999999986
No 34
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.03 E-value=8.5e-06 Score=66.41 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=52.3
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
..+++.++ .....+|||||||+|.++..+++.+ +.+++.+|+ |..++.+++. ++|+++.+|+.+.
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence 34555566 6677899999999999999999998 678999998 6677766542 5899999998763
No 35
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.03 E-value=1.9e-06 Score=70.78 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=49.7
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEeecCCCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY-------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gDff~~~P 230 (231)
.+..+|+|||||+|.+++.+++..|..+++..|.. ..++.|+.+ +||++..+|.++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~ 86 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE 86 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC
Confidence 35689999999999999999999999999999984 566666542 689999999998654
No 36
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.03 E-value=2.7e-06 Score=68.16 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=46.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++.+|+.+++.+|. +..++.++. .++|+++.+|..+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~ 99 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT 99 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH
Confidence 457899999999999999999999999999998 456666543 2679999998753
No 37
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.02 E-value=6.2e-06 Score=68.55 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=52.4
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNV 229 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~ 229 (231)
.+++.++ ....+|+|||||+|.++..+++.+|+.+++.+|. |..++.++.+ ++++++.+|++++.
T Consensus 101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~ 172 (276)
T 2b3t_A 101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL 172 (276)
T ss_dssp HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG
T ss_pred HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc
Confidence 3444443 3457999999999999999999999999999998 5677766542 57999999998764
No 38
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.01 E-value=1.5e-05 Score=65.53 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=52.6
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff~ 227 (231)
..+.+.++ .....+|||||||+|.++..+++ |+.+++.+|+ |..++.++...+++++.+|+.+
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~ 87 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAEN 87 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTS
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhh
Confidence 34555555 56778999999999999999998 7889999998 5677888777799999999865
No 39
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=1.3e-05 Score=62.98 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=49.3
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCC--CCeEEEeechHHHhhCCCCCCceEeecCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYP--HIKGINFDLPHVIQHAPKYPGVEHVGGDMFQN 228 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~v~Dlp~vi~~a~~~~ri~~~~gDff~~ 228 (231)
.+.+.+..+....+|||||||+|.++..+++++| +.+++.+|+.+. ...++++++.+|+.+.
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~ 75 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKD 75 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTT
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccch
Confidence 4455555345678999999999999999999998 689999998662 2246799999998764
No 40
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=97.99 E-value=4.1e-06 Score=64.35 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=50.8
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------C-CCceEeecCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK------Y-PGVEHVGGDMFQNV 229 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~-~ri~~~~gDff~~~ 229 (231)
.+++.++ .....+|+|||||+|.++..+++.+|..+++.+|. |..++.+++ . +++ ++.+|..+.+
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~ 88 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF 88 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh
Confidence 3444455 56678999999999999999999999999999998 456766653 1 378 8888876543
No 41
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=97.99 E-value=5.6e-06 Score=67.54 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=53.3
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-YPGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gDff~ 227 (231)
.+++.++ .....+|||||||+|.++..+++++|..+++.+|+ |..++.++. .++++++.+|+.+
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~ 89 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLAT 89 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTT
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhh
Confidence 4555555 56678999999999999999999999999999998 567777665 4789999999875
No 42
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=97.99 E-value=9.3e-06 Score=66.22 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=50.5
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
.++..+.......+|||||||+|.++..+++.+|. +++.+|+ |..++.++. .+|++++.+|+.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN 107 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 34444433566789999999999999999999987 9999998 566766554 2579999999954
No 43
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=97.98 E-value=8.1e-06 Score=71.24 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=54.3
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---------CCceEeecCCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY---------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---------~ri~~~~gDff~~~P 230 (231)
.+++.++ .....+|+|+|||+|.++..+++.+|+.+++.+|. |..++.++.+ .+++++.+|++++.|
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~ 289 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 289 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC
Confidence 3456665 44458999999999999999999999999999998 5677776652 258889999998755
No 44
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.4e-05 Score=66.92 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC--------CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPK--------YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~--------~~ri~~~~gDff~ 227 (231)
....+|||||||+|.++..+++.+ |..+++.+|+ |..++.+++ .++++++.+|+.+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 467899999999999999999997 9999999998 567776654 4789999999876
No 45
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.97 E-value=8.4e-06 Score=66.60 Aligned_cols=57 Identities=11% Similarity=0.300 Sum_probs=47.1
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCC--------------CCCCceEeecCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAP--------------KYPGVEHVGGDMFQN 228 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~--------------~~~ri~~~~gDff~~ 228 (231)
....+|||||||+|.++..+++.+|+.+++.+|. +.+++.++ ..++++++.+|.++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~ 119 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence 3568999999999999999999999999999997 45655442 236799999998864
No 46
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=97.96 E-value=2.8e-06 Score=67.08 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=41.9
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
.+++.++...+..+|+|||||+|.++..+++.+|+.+++.+|+ |..++.++.. .+++++.+|+++
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 90 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE 90 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh
Confidence 3444444125678999999999999999999999999999999 6778877764 168888888764
No 47
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=97.96 E-value=5.5e-06 Score=65.92 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||+|.++..+++.+ |+.+++.+|. |..++.++.. ++++++.+|+.+
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 99 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 35566666 6778899999999999999999997 8899999998 6677776542 589999999876
No 48
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=97.94 E-value=7.8e-06 Score=66.67 Aligned_cols=56 Identities=11% Similarity=0.297 Sum_probs=45.9
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCC------------CCCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAP------------KYPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~------------~~~ri~~~~gDff~ 227 (231)
.+..+|||||||.|.++..+++.+|+.+++.+|+ +.+++.++ ..++|+++.+|..+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~ 113 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMK 113 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTT
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHH
Confidence 3567899999999999999999999999999998 45555332 23689999999875
No 49
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=97.94 E-value=1.3e-05 Score=70.59 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=51.6
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCC---------------CCCceEeecCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPK---------------YPGVEHVGGDM 225 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~---------------~~ri~~~~gDf 225 (231)
..+++.++ .....+|+|||||+|.+++.+++.++.-+++++|+. ..++.|+. .++|+|+.||+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 34556566 677889999999999999999999887779999985 34444332 26899999999
Q ss_pred CC
Q 047000 226 FQ 227 (231)
Q Consensus 226 f~ 227 (231)
++
T Consensus 242 ~~ 243 (438)
T 3uwp_A 242 LS 243 (438)
T ss_dssp TS
T ss_pred cC
Confidence 86
No 50
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=97.93 E-value=1.7e-05 Score=65.35 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=52.3
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||.|.++..+++++ +.+++.+|+ |..++.++. .++++++.+|+.+
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 122 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD 122 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc
Confidence 45666676 6778899999999999999999987 689999998 566666543 2589999999876
No 51
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=97.93 E-value=7.3e-06 Score=64.70 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=47.5
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNV 229 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~ 229 (231)
..+|+|||||+|.++..+++.+|+.+++++|. |..++.++.. ++++++.+|+.+..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 128 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP 128 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC
Confidence 57999999999999999999999999999998 5677666542 45999999998754
No 52
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=97.92 E-value=1.3e-05 Score=63.69 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=47.4
Q ss_pred HhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------------------CCCceEeecCCC
Q 047000 166 EAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK------------------YPGVEHVGGDMF 226 (231)
Q Consensus 166 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------------------~~ri~~~~gDff 226 (231)
..+. .....+|+|||||+|..+..++++ +.+++.+|+ |..++.+++ ..+|+++.+|++
T Consensus 16 ~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 92 (203)
T 1pjz_A 16 SSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 92 (203)
T ss_dssp HHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred Hhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence 3344 556789999999999999999998 568999998 456666543 258999999998
Q ss_pred CC
Q 047000 227 QN 228 (231)
Q Consensus 227 ~~ 228 (231)
+-
T Consensus 93 ~l 94 (203)
T 1pjz_A 93 AL 94 (203)
T ss_dssp SS
T ss_pred cC
Confidence 63
No 53
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.92 E-value=6.3e-06 Score=66.43 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=45.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEeecCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK------YPGVEHVGGDMF 226 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gDff 226 (231)
...+|||||||+|.++..+++.+|+.+++.+|. |..++.++. .++|+++.+|..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~ 94 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAV 94 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 467999999999999999999999999999998 456655543 257999999854
No 54
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=97.90 E-value=1.2e-05 Score=63.87 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=50.1
Q ss_pred HHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C-CceEeecCCCCC
Q 047000 164 ILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------P-GVEHVGGDMFQN 228 (231)
Q Consensus 164 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~-ri~~~~gDff~~ 228 (231)
++..++ .....+|+|||||+|.++..+++. ..+++.+|+ |..++.+++. + +++++.+|+.+.
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 344455 566789999999999999999998 789999998 6677766542 4 899999999873
No 55
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=97.90 E-value=1.3e-05 Score=64.83 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=44.8
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHH-hhC---CCC------CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVI-QHA---PKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-~~a---~~~------~ri~~~~gDff~ 227 (231)
....+|||||||+|.++..+++++|+.+++.+|+. +.+ +.| ++. ++|+++.+|.-.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 35679999999999999999999999999999985 443 333 542 578898888643
No 56
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=97.90 E-value=1.2e-05 Score=66.50 Aligned_cols=57 Identities=14% Similarity=0.359 Sum_probs=49.4
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
+....+|||||||+|.++..+++.+|+.+++.+|. |..++.++.. ++++++.+|+.+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 98 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccccc
Confidence 56788999999999999999999999999999998 5677766542 679999999876
No 57
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=97.89 E-value=1.2e-05 Score=65.62 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=52.4
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY----PGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gDff~~ 228 (231)
..+++.++ .....+|||||||+|.++..+++++ +.+++++|+ |..++.++.. ++++++.+|+.+.
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK 114 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC
Confidence 34455555 6677899999999999999999998 789999998 5566666543 7899999999863
No 58
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=97.89 E-value=1.2e-05 Score=67.56 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=51.7
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.+++.++ .....+|||||||+|.++..+++++| .+++.+|+ |..++.+++. ++|+++.+|+.+
T Consensus 63 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (302)
T 3hem_A 63 LALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE 133 (302)
T ss_dssp HHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred HHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH
Confidence 4556666 67788999999999999999999987 89999998 5677766542 489999999853
No 59
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=97.88 E-value=1.8e-05 Score=64.53 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=54.3
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCceEeecCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSK-YPHIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQN 228 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~~ 228 (231)
.++..++ +....+|||+|||+|.++..+++. .|..+++.+|. |..++.+++ .++++++.+|+.+.
T Consensus 87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~ 160 (258)
T 2pwy_A 87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA 160 (258)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC
T ss_pred HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence 5666666 777889999999999999999999 78999999998 667766653 26899999998765
No 60
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=97.88 E-value=1.1e-05 Score=66.02 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=50.7
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
...+++.++ .....+|||||||+|.++..+++..+ +++.+|+ |..++.+++. ++++++.+|+.+
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 445666666 56778999999999999999999986 8999998 5677766542 679999999876
No 61
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=97.88 E-value=1.3e-05 Score=65.90 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=50.4
Q ss_pred HHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 164 ILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 164 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
++..++......+|||||||+|.++..+++. |..+++.+|+ |..++.+++. ++|+++.+|+.+
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence 3344433556789999999999999999999 8899999998 5667666542 679999999965
No 62
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.87 E-value=1.5e-05 Score=67.59 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=51.2
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-CCceEeecCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----Y-PGVEHVGGDMF 226 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~-~ri~~~~gDff 226 (231)
.+++.++ .....++||+|||+|.++..+++++|+.+++.+|. |..++.+++ + +|++++.+||.
T Consensus 17 e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~ 85 (301)
T 1m6y_A 17 EVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR 85 (301)
T ss_dssp HHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGG
T ss_pred HHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHH
Confidence 4445555 55678999999999999999999999999999998 567766654 2 68999999974
No 63
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=97.87 E-value=8.5e-06 Score=64.95 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=46.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----------~ri~~~~gDff~ 227 (231)
+..+|||||||+|.++..+++++|..+++.+|+ |..++.+++. ++++++.+|+..
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 95 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY 95 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc
Confidence 467999999999999999999999999999998 5677766542 289999999853
No 64
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=97.87 E-value=7.4e-06 Score=67.02 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=45.4
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDM 225 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDf 225 (231)
...+|||||||+|.++..+++++|+.+++.+|+ |..++.++.+ +||+++.+|.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 125 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ 125 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcch
Confidence 457999999999999999999999999999998 6677766542 5799999984
No 65
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=97.86 E-value=1.3e-05 Score=66.75 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=48.2
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCC-CeEEEeec-hHHHhhCCCC-----CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPH-IKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
..+..+|||||||+|.++..+++.+|+ .+++.+|+ |..++.+++. .+++++.+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 83 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE 83 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhh
Confidence 567889999999999999999999995 89999998 5566655542 379999999986
No 66
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=97.86 E-value=9.9e-06 Score=64.56 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----------~ri~~~~gDff~ 227 (231)
+..+|||||||+|.++..+++++|..+++.+|. |..++.++.. .+++++.+|+..
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 95 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY 95 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc
Confidence 467999999999999999999999999999998 5667666532 289999999853
No 67
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=97.85 E-value=5.8e-06 Score=63.51 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=49.1
Q ss_pred HHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCC
Q 047000 164 ILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQN 228 (231)
Q Consensus 164 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~ 228 (231)
+++.++ .....+|+|||||+|.++..+++ +..+++.+|. |..++.++.. ++++++.+|+.++
T Consensus 27 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 95 (183)
T 2yxd_A 27 SIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV 95 (183)
T ss_dssp HHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc
Confidence 344445 55678999999999999999999 8899999998 5667666542 6899999998653
No 68
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=97.85 E-value=1.5e-05 Score=66.15 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=55.3
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHH-CCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSK-YPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~~P 230 (231)
..++..++ +....+|||+|||+|.++..+++. .|..+++.+|. |..++.++++ ++++++.+|+++.+|
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 178 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD 178 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc
Confidence 35566666 777789999999999999999999 78999999998 6677766542 579999999876543
No 69
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=97.85 E-value=5.5e-06 Score=67.14 Aligned_cols=57 Identities=16% Similarity=0.310 Sum_probs=48.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQNV 229 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~~ 229 (231)
+..+|||||||+|..+..+++.+|+.+++.+|+ |..++.+++. ++|+++.+|+.+..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 135 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQF 135 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCH
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH
Confidence 567999999999999999999999999999998 6677776542 58999999987643
No 70
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=97.85 E-value=1.8e-05 Score=66.13 Aligned_cols=64 Identities=9% Similarity=0.192 Sum_probs=51.0
Q ss_pred HHHHHhC----CCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEeecCCCC
Q 047000 162 QKILEAY----KGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~----~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
..+++.+ + .....+|||||||.|.++..+++++ +.+++++|+ |..++.+++ .++|+++.+|+.+
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 143 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence 3445555 4 6678899999999999999999987 468999998 556666654 2689999999986
No 71
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=97.84 E-value=1e-05 Score=68.93 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=46.0
Q ss_pred ceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEeecCCCC
Q 047000 175 QQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK------YPGVEHVGGDMFQ 227 (231)
Q Consensus 175 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gDff~ 227 (231)
.+|||||||.|.+++.+++.+|+.+++++|+ |.+++.+++ .+|++++.+|.++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~ 150 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARM 150 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHH
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHH
Confidence 4999999999999999999999999999998 668877764 2689999998654
No 72
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=97.83 E-value=3.4e-05 Score=69.43 Aligned_cols=65 Identities=17% Similarity=0.039 Sum_probs=51.8
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEeecCCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
...+++.++ ..+..+|+|||||+|.+++.+++ .|..+++.+|+.+.++.+++ .++|+++.+|+++
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 345556555 44568999999999999998887 68889999999876666553 1789999999987
No 73
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=97.83 E-value=1.5e-05 Score=64.16 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEeecCCCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-YPGVEHVGGDMFQNVP 230 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gDff~~~P 230 (231)
....+|||||||+|.++..+++. +.+++.+|+ |..++.++. .++++++.+|+++.+|
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~ 105 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELP 105 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccC
Confidence 35679999999999999999998 678999998 667777765 4789999999987654
No 74
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=97.81 E-value=2.2e-05 Score=60.44 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=44.0
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEeecCCCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKYPGVEHVGGDMFQNVP 230 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gDff~~~P 230 (231)
...+|+|||||+|.++..++++. +++.+|+. ..++. .++++++.+|++++.|
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~ 75 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSIN 75 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBC
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcc
Confidence 34699999999999999999998 89999984 45555 6789999999988654
No 75
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=97.80 E-value=9e-06 Score=62.62 Aligned_cols=56 Identities=5% Similarity=-0.063 Sum_probs=45.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.....+|+|+|||+|.++..++++ +..+++.+|+ |..++.++.. ++++++.+|+.+
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER 92 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence 345679999999999999999988 6789999999 6677766542 479999999765
No 76
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=97.79 E-value=3.9e-05 Score=62.84 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=46.1
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gDff~ 227 (231)
.+..+|||||||+|.++..+++..+ +++.+|+ |..++.+++ ..+++++.+|+.+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~ 104 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRD 104 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTT
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHH
Confidence 3568999999999999999999964 7899998 778887765 3689999999976
No 77
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=97.78 E-value=3.3e-05 Score=59.70 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=51.4
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C--CceEeecCCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------P--GVEHVGGDMFQNVP 230 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~--ri~~~~gDff~~~P 230 (231)
.+++.+. .....+|||||||+|.++..+++. ..+++.+|. |..++.++.. + |++++.+|+.+..+
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK 116 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence 4555565 567789999999999999999998 778999998 5666666542 3 59999999987643
No 78
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=97.78 E-value=1.9e-05 Score=65.16 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=48.1
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------C---CCceEeecCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-------Y---PGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~---~ri~~~~gDff~~ 228 (231)
.....+|||+|||+|.++..+++++|+.+++.+|+ |..++.++. . +|++++.+|+.+.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR 102 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence 45678999999999999999999999999999998 556655432 2 4799999999864
No 79
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=97.77 E-value=3.2e-05 Score=62.27 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=49.7
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY---PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gDff~ 227 (231)
+.+...++ .....+|||||||+|.++..+++..+ .+++++|. |..++.++.. .+++++.+|+.+
T Consensus 33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 100 (243)
T 3bkw_A 33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDK 100 (243)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGG
T ss_pred HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhh
Confidence 34556666 55678999999999999999998833 38999998 5677766543 579999999875
No 80
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=97.76 E-value=1.9e-05 Score=66.64 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEeecCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-----------YPGVEHVGGDMFQN 228 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gDff~~ 228 (231)
+..+|||||||+|..++++++..|..+++++|+ |.+++.+++ .+|++++.+|.++.
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~ 150 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF 150 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC-
T ss_pred CCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHH
Confidence 568999999999999999999888889999998 567776543 36899999998764
No 81
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=97.76 E-value=5.7e-05 Score=60.90 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=47.4
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhh----CCCCCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQH----APKYPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~----a~~~~ri~~~~gDff~ 227 (231)
+.+..+|||||||+|.++..+++.+|..+++.+|.. ..++. ++..++++++.+|+.+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~ 133 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCC
Confidence 556789999999999999999999998899999984 45543 4445789999999876
No 82
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=97.75 E-value=1.8e-05 Score=63.98 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=51.8
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~P 230 (231)
.+++.++ .....+|||||||+|.++..+++..| .+++.+|. |..++.+++. ++++++.+|+..+.|
T Consensus 82 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 154 (235)
T 1jg1_A 82 IMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP 154 (235)
T ss_dssp HHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCC
Confidence 4445555 66778999999999999999999998 88999996 5677766542 569999999855443
No 83
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=97.74 E-value=4.2e-05 Score=61.90 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=46.0
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK---YPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~---~~ri~~~~gDff~ 227 (231)
.....+|||||||+|.++..+++.++ +++.+|. |..++.++. ..+++++.+|+.+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 112 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLV 112 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccc
Confidence 44668899999999999999999998 7899998 567766654 3589999999876
No 84
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.73 E-value=6e-05 Score=62.03 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=51.1
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY--PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--~ri~~~~gDff~ 227 (231)
..+++..+ .....+|+|||||+|.++..++++ +..+++.+|+. ..++.+++. .+++++.+|+.+
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASK 87 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhh
Confidence 35566666 666789999999999999999988 56789999985 466666553 679999999976
No 85
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.73 E-value=4.6e-05 Score=60.03 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=48.5
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gDff~~ 228 (231)
..+.+.|..+.+..+|||+|||+|.++..++++ ..+++.+|+-+. ...++++++.+|+.+.
T Consensus 14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~ 74 (191)
T 3dou_A 14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSS
T ss_pred HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCH
Confidence 355566653567889999999999999999998 778999998542 2347899999999864
No 86
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=97.73 E-value=2.6e-05 Score=63.46 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=50.5
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK---YPGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~---~~ri~~~~gDff~ 227 (231)
.+.+.++ .....+|||||||+|.++..+++..+. +++++|+ |..++.+++ ..+++++.+|+.+
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 101 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIED 101 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGG
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhh
Confidence 4455555 446789999999999999999999776 8999998 667776654 3789999999865
No 87
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.73 E-value=7.7e-05 Score=58.12 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=47.0
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCC---------CeEEEeechHHHhhCCCCCCceEe-ecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPH---------IKGINFDLPHVIQHAPKYPGVEHV-GGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~---------l~~~v~Dlp~vi~~a~~~~ri~~~-~gDff~ 227 (231)
.+.+.+..+....+|||||||+|.++..+++++|. .+++.+|+.+. ...++++++ .+|+.+
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTD 82 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTS
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCC
Confidence 34444553456789999999999999999999875 78999998662 223678888 888764
No 88
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=97.73 E-value=3.9e-05 Score=62.07 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=45.3
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff~ 227 (231)
.+...++.+.+..+|||||||+|.++..+++. +.+++.+|+ |..++.++.. ++++.+|+.+
T Consensus 31 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~ 92 (240)
T 3dli_A 31 RLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIE 92 (240)
T ss_dssp HHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHH
T ss_pred HHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHH
Confidence 33333443456789999999999999999998 557899998 5677766655 7777777644
No 89
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.72 E-value=3.1e-05 Score=59.89 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=48.5
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-PGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gDff~ 227 (231)
.++..+. ....+|||||||.|.++..+++. +.+++.+|. |..++.++.. ++++++.+|+.+
T Consensus 38 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~ 100 (195)
T 3cgg_A 38 RLIDAMA--PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSV 100 (195)
T ss_dssp HHHHHHS--CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTT
T ss_pred HHHHHhc--cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEccccc
Confidence 4445442 46789999999999999999998 568999998 5677776653 679999999886
No 90
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=97.72 E-value=3.4e-05 Score=64.09 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=49.1
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEeecCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMF 226 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff 226 (231)
.+++.++ .....+|||||||.|.++..++++++. +++++|+ |..++.+++ .++++++.+|+.
T Consensus 55 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 124 (287)
T 1kpg_A 55 LALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE 124 (287)
T ss_dssp HHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence 4555565 667789999999999999999988754 9999998 566666543 258999999984
No 91
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=97.72 E-value=3e-05 Score=67.63 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=47.7
Q ss_pred CCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC--------------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPKY--------------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~--------------~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++.+ |+.+++.+|+ |..++.+++. ++++++.+|+.+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~ 153 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN 153 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH
Confidence 46799999999999999999997 8999999998 6677766542 689999999986
No 92
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=97.72 E-value=2.3e-05 Score=64.61 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=50.8
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeechH-------HHhhCCCC-------CCceEeecC-CC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDLPH-------VIQHAPKY-------PGVEHVGGD-MF 226 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-------vi~~a~~~-------~ri~~~~gD-ff 226 (231)
.+++.++ .....+|||||||.|.++..+++++ |+.+++.+|+.+ .++.+++. ++|+++.+| ++
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4556566 6677899999999999999999996 889999999854 56655432 589999998 54
Q ss_pred C
Q 047000 227 Q 227 (231)
Q Consensus 227 ~ 227 (231)
.
T Consensus 113 ~ 113 (275)
T 3bkx_A 113 D 113 (275)
T ss_dssp T
T ss_pred h
Confidence 3
No 93
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=97.72 E-value=3.1e-05 Score=62.49 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=48.1
Q ss_pred CCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeechH-----HHhhCCCCCCceEeecCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDLPH-----VIQHAPKYPGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----vi~~a~~~~ri~~~~gDff~~ 228 (231)
.....+|||||||+|.++..+++.+ |+.+++.+|+.+ .++.++..++++++.+|+.++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~ 138 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHP 138 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCG
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCCh
Confidence 5567899999999999999999997 788999999853 345555558899999999873
No 94
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=97.72 E-value=3.7e-05 Score=60.74 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=50.8
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEeecCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK------YPGVEHVGGDMFQNV 229 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gDff~~~ 229 (231)
.+++.++ .....+|||||||+|.++..+++. ..+++.+|. |..++.+++ .++++++.+|.++..
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 3445555 667889999999999999999999 678999998 567766654 257999999987743
No 95
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=97.71 E-value=3e-05 Score=66.57 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=51.6
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~~ 228 (231)
..+++.++ .....+|+|||||+|.++..+++.+|+.+++.+|. |..++.++.+ -.++++.+|+++.
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~ 257 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE 257 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc
Confidence 34556664 33456899999999999999999999999999999 4567766542 3477889998864
No 96
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=97.71 E-value=2.7e-05 Score=64.04 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=47.9
Q ss_pred CC-CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 171 FE-HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
.. +..+|||||||+|.++..++++.+. +++.+|+ |..++.++.+ +|++++.+|+.+.
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~ 111 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGG
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHh
Confidence 56 6789999999999999999999877 9999998 5667666542 5899999998763
No 97
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.71 E-value=2e-05 Score=60.89 Aligned_cols=56 Identities=13% Similarity=-0.061 Sum_probs=45.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.....+|||+|||+|.++..+++ .+..+++.+|+ |..++.++.+ ++++++.+|+.+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence 34567999999999999999888 56778999998 6677776642 579999999865
No 98
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=97.70 E-value=3.6e-05 Score=61.10 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=51.6
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNV 229 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~ 229 (231)
.+++.+. .....+|||||||+|.++..+++.. |+.+++.+|. |..++.+++. ++++++.+|+.++.
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 141 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY 141 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC
Confidence 3444455 5667899999999999999999998 7789999998 5666666542 57999999986544
No 99
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=97.70 E-value=3.1e-05 Score=66.69 Aligned_cols=66 Identities=15% Similarity=0.032 Sum_probs=55.0
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
+..++.... |.+..+|+|+|||+|.++++++... |+.+++.+|. |.+++.++.+ ++|+++.+|+.+
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGG
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhh
Confidence 445556566 8888899999999999999999998 9999999998 5677776652 489999999876
No 100
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=97.70 E-value=1.5e-05 Score=64.34 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=47.8
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
+..+|||||||.|..+..+++.+|+.+++.+|. |..++.++.. ++|+++.+|+.+.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 117 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 467999999999999999999999999999998 6677766542 5799999998763
No 101
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=97.70 E-value=5.1e-05 Score=59.79 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=45.9
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNV 229 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~ 229 (231)
....+|||||||+|.++..+++ +|..+++.+|. |..++.+++. ..++++.+|+.+..
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 122 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV 122 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC
Confidence 3567999999999999999776 57789999998 6677766542 34999999998653
No 102
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=97.69 E-value=8.6e-06 Score=68.63 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=48.5
Q ss_pred CCCCceEEEccCChhHHHHHHH-HHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAIT-SKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
.....+|||||||+|.++..++ +.+|+.+++.+|+ |..++.+++. +||+++.+|+.+.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL 182 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC
Confidence 3567899999999999999996 7899999999998 6777766542 5699999998763
No 103
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=97.69 E-value=6.7e-05 Score=62.00 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=46.0
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++.+. +++.+|. |..++.++++++|+++.+|+-+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~ 92 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAED 92 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTC
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhh
Confidence 457899999999999999999864 6889998 5688999989999999999754
No 104
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=97.68 E-value=4.1e-05 Score=63.42 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=50.9
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||+|.++..+++ |+.+++++|+ |..++.++.. ++++++.+|+.+
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~ 111 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARN 111 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTT
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhh
Confidence 34555555 56678999999999999999999 8889999998 5677766653 789999999865
No 105
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=97.68 E-value=3.8e-05 Score=62.22 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=50.8
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||+|.++..+++.++ +++.+|+ |..++.++.. ++++++.+|+.+
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 80 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 80 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc
Confidence 45566666 77789999999999999999999986 7899998 5677666542 679999999865
No 106
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=97.67 E-value=3.8e-05 Score=62.90 Aligned_cols=63 Identities=10% Similarity=0.229 Sum_probs=49.7
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----YPGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||+|.++..++++. .+++.+|+ |..++.+++ .++++++.+|+.+
T Consensus 20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~ 87 (244)
T 1qam_A 20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQ 87 (244)
T ss_dssp HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGG
T ss_pred HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHh
Confidence 45556565 6667899999999999999999996 67999998 455555443 3789999999876
No 107
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.67 E-value=1.2e-05 Score=65.42 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=41.2
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGD 224 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD 224 (231)
....+|||||||.|..+..+++.+|. +.+++|+ |.+++.+++. .+++++.+|
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL 116 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeeh
Confidence 35689999999999999999998885 7888998 6788877642 456666665
No 108
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=97.67 E-value=4.3e-05 Score=59.47 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=49.4
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
.+++.++ .....+|||||||+|.++..+++. +.+++.+|. |..++.++.. ++++++.+|+.+
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 91 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN 91 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh
Confidence 4555565 555679999999999999999988 678999998 6677776542 479999999875
No 109
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=97.66 E-value=4e-05 Score=64.69 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||.|.++..+++.+ +.+++++|+ |..++.+++. ++++++.+|+.+
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 151 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED 151 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH
Confidence 34556666 6677899999999999999999997 669999998 5666666542 579999998743
No 110
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=97.65 E-value=3e-05 Score=62.00 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=46.7
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
+..+|||||||+|..+..+++.+| +.+++.+|+ |..++.+++ .++|+++.+|..+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD 121 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 468999999999999999999999 889999998 667766653 2579999998754
No 111
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.65 E-value=2.8e-05 Score=63.93 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
.....+|+|||||+|..+..+++.+|+.+++.+|. +..++.+++. .+|+++.+|..+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~ 141 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEV 141 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHH
Confidence 35678999999999999999999999999999997 4566665542 469999988643
No 112
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=97.65 E-value=4e-05 Score=62.39 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=46.3
Q ss_pred CceEEEccCChhHHHHHHHHH----CCCCeEEEeec-hHHHhhCCC-CCCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSK----YPHIKGINFDL-PHVIQHAPK-YPGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gDff~ 227 (231)
..+|||||||+|..+..+++. +|+.+++.+|+ |..++.++. .++|+++.+|..+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~ 141 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSD 141 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSC
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchh
Confidence 469999999999999999998 79999999998 556666654 3789999999876
No 113
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=97.64 E-value=2.9e-05 Score=65.51 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=48.3
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
.....+|+|||||+|.++..++.+.|+.+++.+|+ |..++.|++. ++|+++.+|..+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~ 183 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV 183 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh
Confidence 66789999999999988877777788999999998 6788877652 789999999864
No 114
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=97.64 E-value=6.2e-05 Score=60.15 Aligned_cols=57 Identities=7% Similarity=0.041 Sum_probs=45.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechH-----HHhhCCCCCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPH-----VIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-----vi~~a~~~~ri~~~~gDff~ 227 (231)
..+..+|||||||+|.++..+++..|+-+++.+|+.+ .++.++...++.++.+|..+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~ 116 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASK 116 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 4567899999999999999999999877899999854 33444444678888888765
No 115
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=97.64 E-value=1.7e-05 Score=64.47 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=46.9
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
+....+|||||||+|.++..+++.+|+.+++.+|. |..++.++.. ++|+++.+|+.+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 131 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAET 131 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHH
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHH
Confidence 34668999999999999999999999999999998 5566666542 569999998643
No 116
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.63 E-value=3.7e-05 Score=63.60 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=53.1
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC---------CCCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSK-YPHIKGINFDL-PHVIQHAPK---------YPGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~---------~~ri~~~~gDff~~ 228 (231)
..++..++ .....+|||||||+|.++..+++. .|..+++.+|. |..++.++. .++++++.+|+.+.
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 35566666 777789999999999999999996 68899999998 667666543 25799999998764
No 117
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.63 E-value=3.3e-05 Score=64.23 Aligned_cols=58 Identities=10% Similarity=-0.044 Sum_probs=49.6
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~ 228 (231)
+.+..+|+|+|||+|.++..++++.+..+++.+|+ |..++.++.+ ++++++.+|+++.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~ 181 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV 181 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc
Confidence 45678999999999999999999999889999998 6777776642 5788999998764
No 118
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=97.63 E-value=3.3e-05 Score=63.21 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.+..+|||||||+|..+..+++.+| +.+++.+|+ |..++.+++. ++|+++.+|..+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 126 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ 126 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 3568999999999999999999998 899999999 6677766542 589999999754
No 119
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=97.62 E-value=3.5e-05 Score=64.56 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=50.0
Q ss_pred hHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---------CCceEeecCCCC
Q 047000 160 VIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY---------PGVEHVGGDMFQ 227 (231)
Q Consensus 160 ~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---------~ri~~~~gDff~ 227 (231)
....+++.++ .. ..+|||||||+|.++..++++ +.+++.+|+ |..++.+++. .+|+++.+|+.+
T Consensus 71 ~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 71 EAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred HHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence 3445566555 33 349999999999999999998 578999998 6677776642 679999999986
No 120
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=97.62 E-value=2.3e-05 Score=61.30 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.....+|||+|||+|.++..+++++ |..+++.+|. |..++.+++. ++++++.+|+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 85 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQN 85 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGG
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence 3456799999999999999999996 7789999998 5677766542 679999999643
No 121
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=97.61 E-value=3.8e-05 Score=61.66 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=46.5
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gDff~ 227 (231)
.+..+|||||||+|.++..+++.++ +++.+|+ |..++.++.. ++++++.+|+.+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~ 94 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRD 94 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTT
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHH
Confidence 3568999999999999999999987 7899999 6778777654 789999999876
No 122
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=97.61 E-value=4.4e-05 Score=60.61 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=48.9
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--CCceEeecCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY--PGVEHVGGDMFQN 228 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--~ri~~~~gDff~~ 228 (231)
.+++.+. .....+|||||||+|.++..++++ +.+++++|. |..++.++.. .+++++.+|+.+.
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~ 101 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSF 101 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSC
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhc
Confidence 3344333 335689999999999999999998 678999998 5677666553 4899999999863
No 123
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.61 E-value=2.3e-05 Score=65.68 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=50.3
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCC--CeEEEeech-HHHhhCCC--CCCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPH--IKGINFDLP-HVIQHAPK--YPGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~v~Dlp-~vi~~a~~--~~ri~~~~gDff~ 227 (231)
.+++..+ .....+|||||||+|.++..++++.+. .+++.+|+. ..++.+++ .++++++.+|+.+
T Consensus 33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALT 101 (279)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGG
T ss_pred HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhc
Confidence 4555555 566789999999999999999998765 568999984 56666554 3789999999876
No 124
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=97.61 E-value=1.3e-05 Score=63.64 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
+..+|||||||+|..+..+++.+| +.+++.+|. |..++.++++ ++|+++.+|.++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 119 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG 119 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence 457999999999999999999998 889999998 5677766642 579999998764
No 125
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=97.60 E-value=4.1e-05 Score=63.54 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=48.5
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
.++..++ . +..+|||||||+|.++..+++. +.+++.+|+ |..++.++.. ++++++.+|+.+.
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 129 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDV 129 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGT
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHh
Confidence 3445554 2 3579999999999999999998 678999998 6677766542 6799999998653
No 126
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=97.59 E-value=0.00014 Score=55.03 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=47.4
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~vi~~a~~~~ri~~~~gDff~ 227 (231)
.+++.+.......+|||||||+|.++..+++.+ |+.+++.+|+.+ .. ..++++++.+|+.+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~---~~~~~~~~~~d~~~ 73 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD---PIVGVDFLQGDFRD 73 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC---CCTTEEEEESCTTS
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc---ccCcEEEEEccccc
Confidence 344444424566799999999999999999995 789999999976 22 22788999999875
No 127
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=97.59 E-value=3.6e-05 Score=62.81 Aligned_cols=50 Identities=20% Similarity=0.064 Sum_probs=39.7
Q ss_pred HHHhCCCCCCCceEEEccCChhHHHHHHHHH--CCCCeEEEeec-hHHHhhCCC
Q 047000 164 ILEAYKGFEHIQQLVDVGGCLGNTLKAITSK--YPHIKGINFDL-PHVIQHAPK 214 (231)
Q Consensus 164 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl-p~vi~~a~~ 214 (231)
+++.++ -....+|+|+|||+|.++..+++. +|..+++.+|+ |..++.++.
T Consensus 43 ~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~ 95 (250)
T 1o9g_A 43 ALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAK 95 (250)
T ss_dssp HHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHH
T ss_pred HHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHH
Confidence 334333 234679999999999999999999 88889999998 677777663
No 128
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=97.57 E-value=8.6e-05 Score=59.47 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=46.3
Q ss_pred CCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeechH-HH----hhCCCCCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDLPH-VI----QHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi----~~a~~~~ri~~~~gDff~ 227 (231)
.....+|+|+|||+|.++..+++.+ |+.+++.+|..+ .+ +.++..++++++.+|+.+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~ 133 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATK 133 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCC
Confidence 5567899999999999999999985 678999999854 33 344445789999999987
No 129
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=97.57 E-value=1.5e-05 Score=63.94 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=46.2
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
+..+|||||||+|..+..+++..| +.+++.+|+ |..++.++++ ++|+++.+|..+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence 468999999999999999999875 889999998 6677776652 579999999743
No 130
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=97.56 E-value=7e-05 Score=64.32 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=49.4
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.+.+... ..+..+|||||||+|.++..++++ +..+++.+|..+.++.+++. ++|+++.+|+.+
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEE 124 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHH
Confidence 3444444 456789999999999999999987 55689999997777666542 789999999876
No 131
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=97.56 E-value=4.7e-05 Score=61.76 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY----PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||+|.++..++++. ..+++.+|. |..++.+++. .+++++.+|+.+
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 151 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET 151 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGG
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHH
Confidence 35556665 5567899999999999999999987 557899997 6677666542 679999999865
No 132
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.56 E-value=5.4e-05 Score=63.11 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=47.4
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQNV 229 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~~ 229 (231)
.+..+|+|+|||+|.++..+++..+. +++.+|+ |..++.++++ ++++++.+|.++..
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~ 188 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP 188 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc
Confidence 35689999999999999999999887 8999998 5677766542 56999999998753
No 133
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.56 E-value=4.9e-05 Score=60.73 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=46.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
+..+|||||||+|..+..+++.+| +.+++.+|. |..++.+++. ++|+++.+|..+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 127 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence 467999999999999999999998 889999998 5666666542 679999998754
No 134
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=97.56 E-value=4e-05 Score=61.71 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=43.6
Q ss_pred ceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCCC
Q 047000 175 QQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQNV 229 (231)
Q Consensus 175 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~~ 229 (231)
.+|||||||+|.++..+++ ++.+++.+|+ |..++.+++. .+++++.+|+.+..
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 128 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR 128 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC
Confidence 5999999999999999977 6778999998 5677666542 56999999998753
No 135
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.55 E-value=5.3e-05 Score=62.60 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=50.0
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPK----YPGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gDff~~ 228 (231)
..+++..+ .....+|+|||||+|.++..++++. .+++.+|+. ..++.+++ .++++++.+|+.+-
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence 34555555 6667899999999999999999985 678999984 45555543 47899999999873
No 136
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=97.54 E-value=3.3e-05 Score=59.56 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=48.1
Q ss_pred HHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 164 ILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 164 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
++..++ .....+|||+|||+|.++..+++.. .+++.+|. |..++.++.. ++++++.+|+.+
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence 334445 5667899999999999999999998 78999998 6677666541 688999988755
No 137
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=97.54 E-value=3.5e-05 Score=64.28 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=46.5
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
...+|||||||.|.+++++++.+|..+++++|+ |.+++.+++ .+|++++.+|.++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~ 140 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM 140 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH
Confidence 468999999999999999999888889999998 667776543 3689999999764
No 138
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=97.53 E-value=5.9e-05 Score=58.37 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=43.5
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDM 225 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDf 225 (231)
.....+|||||||+|.++..++++ ..+++.+|+ |..++.+++. ++++++.+|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~ 79 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH 79 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH
Confidence 456789999999999999999998 788999998 5677776542 6788888665
No 139
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.53 E-value=0.00012 Score=59.38 Aligned_cols=62 Identities=15% Similarity=0.310 Sum_probs=48.2
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
.+++.+. ..+..+|||||||+|.++..+++. +.+++.+|+ |..++.++.. .+++++.+|+.+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 99 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE 99 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh
Confidence 3444444 345689999999999999999987 678999998 6677766542 479999999876
No 140
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=97.51 E-value=4.9e-05 Score=61.13 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=43.5
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--CCceEeecCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY--PGVEHVGGDMFQN 228 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--~ri~~~~gDff~~ 228 (231)
...+|||||||+|.++..+++.++ +++++|+ |..++.+++. .+++++.+|+.+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~ 98 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDA 98 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc
Confidence 457899999999999999999987 5888898 4566666543 2899999998654
No 141
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.51 E-value=6.6e-05 Score=62.59 Aligned_cols=61 Identities=18% Similarity=0.076 Sum_probs=46.9
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCC---CCCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPK---YPGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~---~~ri~~~~gDff~ 227 (231)
.+++..+ .... +|||||||+|.++..++++. .+++.+|+. ..++.+++ .++++++.+|+++
T Consensus 38 ~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~ 102 (271)
T 3fut_A 38 RIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALL 102 (271)
T ss_dssp HHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGG
T ss_pred HHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhh
Confidence 4555555 5556 99999999999999999985 578888974 45554443 2689999999976
No 142
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=97.51 E-value=0.00013 Score=59.44 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=44.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-----YPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----~~ri~~~~gDff~ 227 (231)
.....+|||||||+|.++..+++. +.+++.+|. |..++.++. .++++++.+|+.+
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 97 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARA 97 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTS
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEccccc
Confidence 556789999999999999999987 578999998 456655543 3789999999864
No 143
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.50 E-value=5.3e-05 Score=61.86 Aligned_cols=63 Identities=13% Similarity=0.281 Sum_probs=51.1
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY----PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||.|.++..++++. .+++.+|+ |..++.+++. ++++++.+|+.+
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~ 86 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQ 86 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhh
Confidence 35556666 6677899999999999999999985 78999998 5566666653 679999999876
No 144
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=97.50 E-value=2.1e-05 Score=60.07 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=45.8
Q ss_pred HhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEeecC
Q 047000 166 EAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-YPGVEHVGGD 224 (231)
Q Consensus 166 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD 224 (231)
+.++ ..+..+|||||||.|.++..+++.+. +++++|. |..++.++. .++++++.+|
T Consensus 11 ~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d 68 (170)
T 3i9f_A 11 PNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP 68 (170)
T ss_dssp HHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG
T ss_pred HhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC
Confidence 3344 55678999999999999999999984 8999998 567777665 4789999888
No 145
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=97.49 E-value=8.2e-05 Score=58.94 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=47.0
Q ss_pred hCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEeecCCCCC
Q 047000 167 AYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----YPGVEHVGGDMFQN 228 (231)
Q Consensus 167 ~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gDff~~ 228 (231)
.++ .....+|||||||+|.++..+++.. .+++.+|. |..++.++. .++++++.+|+.+.
T Consensus 46 ~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 109 (216)
T 3ofk_A 46 SLS-SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQF 109 (216)
T ss_dssp HTT-TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTC
T ss_pred Hcc-cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhC
Confidence 344 4567899999999999999999986 47899998 556665543 36899999998764
No 146
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=97.49 E-value=0.00014 Score=61.42 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=50.8
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEeecCCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPK----YPGVEHVGGDMFQ 227 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gDff~ 227 (231)
...+++..+ .....+|||||||+|.++..++++ ..+++.+|+. ..++.+++ .++++++.+|+.+
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~ 107 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALK 107 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTT
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhh
Confidence 345666666 667789999999999999999998 5678999984 45555544 3789999999987
No 147
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=97.48 E-value=0.00014 Score=58.52 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=45.4
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY---PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++. +.+++.+|. |..++.++.. .+++++.+|+.+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 109 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSS 109 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTB
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhc
Confidence 5679999999999999999998 668999998 5677776653 789999999876
No 148
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.48 E-value=5.7e-05 Score=59.31 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gDff~ 227 (231)
....+|+|+|||+|.++..+++. +..+++.+|+ |..++.++.+ .+++++.+|+++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~ 106 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE 106 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH
Confidence 35679999999999999999987 5567999998 6677776653 489999999875
No 149
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=97.48 E-value=0.0001 Score=62.52 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=51.0
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC------CCceEeecCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQN 228 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~ 228 (231)
.+++.++ .....+|||||||.|.++..+++..+ +.+++.+|+ |..++.+++. ++++++.+|+.+.
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence 3445455 56678999999999999999999988 488999998 5666666542 5699999998764
No 150
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.47 E-value=3.8e-05 Score=61.53 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=46.7
Q ss_pred CCCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.+..+|||||||+|..+..+++..| +.+++.+|. |..++.+++. ++|+++.+|+++
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 3567999999999999999999988 789999998 6677666542 689999998754
No 151
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=97.47 E-value=7.6e-05 Score=61.44 Aligned_cols=54 Identities=6% Similarity=-0.109 Sum_probs=43.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------------------CCCceEeecCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-----------------------YPGVEHVGGDMFQN 228 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------------------~~ri~~~~gDff~~ 228 (231)
...+|||||||.|..+..|++. +.+++.+|+ |..++.+++ ..+|+++.+|+++-
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5679999999999999999987 668999998 456665521 25799999999873
No 152
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.47 E-value=0.00016 Score=61.63 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=51.8
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-----------------CCCceEeec
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSK-YPHIKGINFDL-PHVIQHAPK-----------------YPGVEHVGG 223 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-----------------~~ri~~~~g 223 (231)
.++..++ .....+|||||||+|.++..+++. .|+.+++.+|+ |..++.+++ .++|+++.+
T Consensus 96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 4555555 667789999999999999999998 58899999998 556655543 258999999
Q ss_pred CCCCC
Q 047000 224 DMFQN 228 (231)
Q Consensus 224 Dff~~ 228 (231)
|+.+.
T Consensus 175 d~~~~ 179 (336)
T 2b25_A 175 DISGA 179 (336)
T ss_dssp CTTCC
T ss_pred ChHHc
Confidence 98874
No 153
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=97.46 E-value=7.7e-05 Score=58.70 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=45.5
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gDff~ 227 (231)
....+|||||||+|.++..+++..+. +++++|. |..++.++. .++++++.+|+.+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~ 100 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK 100 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc
Confidence 45679999999999999999999776 8999998 556666543 3689999999876
No 154
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=97.46 E-value=0.00014 Score=58.31 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=49.5
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEeecCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY----PGVEHVGGDMFQN 228 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gDff~~ 228 (231)
.+++.+. .....+|||||||+|.++..+++.. .+++.+|. |..++.++.. .+++++.+|+.+.
T Consensus 61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~ 128 (231)
T 1vbf_A 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG 128 (231)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccc
Confidence 4455555 5667899999999999999999996 68999998 5566666542 3899999998764
No 155
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=97.46 E-value=0.0001 Score=61.71 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=49.4
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C---CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----Y---PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~---~ri~~~~gDff~ 227 (231)
..+++.++ .....+|||||||+|.++..++++. .+++.+|+ |..++.+++ . ++++++.+|+.+
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~ 88 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence 45556666 6677899999999999999999995 47899998 456655443 1 579999999986
No 156
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=97.46 E-value=7.4e-05 Score=59.06 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=43.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff~ 227 (231)
+....+|||||||+|.++..+++. +.+++.+|. |..++.++..-+++++.+|+.+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~ 96 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQ 96 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeecc
Confidence 446789999999999999999988 668999998 5677766654467777777654
No 157
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=97.45 E-value=7.1e-05 Score=64.48 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=46.2
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEeecCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-------YPGVEHVGGDMFQN 228 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gDff~~ 228 (231)
+..+|||||||+|.++..++++ +..+++.+|..+.++.+++ .++|+++.+|+.+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 127 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 127 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc
Confidence 4679999999999999999998 6779999999877766654 26799999999873
No 158
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.45 E-value=5.8e-05 Score=59.24 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=44.3
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-YPGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gDff~ 227 (231)
..+|||||||+|.++..+++. +.+++.+|. |..++.++. .++++++.+|+.+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~ 95 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITD 95 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGG
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccc
Confidence 578999999999999999998 568999998 567777765 4789999999865
No 159
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=97.43 E-value=7e-05 Score=63.95 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEeecCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-------YPGVEHVGGDMFQN 228 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gDff~~ 228 (231)
+..+|||||||+|.++..++++ +..+++.+|..+.++.+++ .++|+++.+|+.+-
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 99 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhc
Confidence 4579999999999999999887 5568999999876666553 26899999998763
No 160
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.43 E-value=0.00011 Score=60.59 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=47.6
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY----PGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gDff~ 227 (231)
..+++..+ .....+|||||||+|.++. + ++.++.+++.+|+ |..++.+++. ++++++.+|+.+
T Consensus 11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~ 78 (252)
T 1qyr_A 11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred HHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence 45555555 5667899999999999999 5 4555555999998 5566666553 589999999876
No 161
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=97.43 E-value=3.3e-05 Score=63.52 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=49.3
Q ss_pred HHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---C--CceEe
Q 047000 148 VFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY---P--GVEHV 221 (231)
Q Consensus 148 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~--ri~~~ 221 (231)
.|.......+......+... ..+..+|+|||||+|.++..+++..+ +++.+|. |..++.++++ . .++++
T Consensus 98 ~fgtg~~~tt~~~~~~l~~~---~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~ 172 (254)
T 2nxc_A 98 AFGTGHHETTRLALKALARH---LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFL 172 (254)
T ss_dssp ----CCSHHHHHHHHHHHHH---CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred cccCCCCHHHHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 35544444444433333333 24568999999999999999999876 8999998 5666666542 1 18888
Q ss_pred ecCCCC
Q 047000 222 GGDMFQ 227 (231)
Q Consensus 222 ~gDff~ 227 (231)
.+|+.+
T Consensus 173 ~~d~~~ 178 (254)
T 2nxc_A 173 EGSLEA 178 (254)
T ss_dssp ESCHHH
T ss_pred ECChhh
Confidence 888754
No 162
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.41 E-value=7.1e-05 Score=56.79 Aligned_cols=53 Identities=11% Similarity=0.000 Sum_probs=43.7
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----C-CceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY----P-GVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~-ri~~~~gDff~ 227 (231)
...+|+|+|||+|.++..++++.++ ++.+|. |..++.++.+ . +++++.+|+.+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 99 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV 99 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHH
Confidence 4679999999999999999999877 999998 6677776652 2 78898888754
No 163
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=97.40 E-value=0.0002 Score=56.78 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=45.8
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff~ 227 (231)
..+++.++ ....+|+|||||.|.++..+++. + .+++++|. |..++.++..- .+++.+|+.+
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~ 84 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIET 84 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTT
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhh
Confidence 45555554 45689999999999999999998 5 89999998 55666665432 3677777764
No 164
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=97.40 E-value=0.00024 Score=63.01 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=48.3
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechH-HHhhC-------CC--------CCCceEeecCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPH-VIQHA-------PK--------YPGVEHVGGDMF 226 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a-------~~--------~~ri~~~~gDff 226 (231)
.+++.++ .....+|||||||+|.++..+++.+|..+++.+|+.+ .++.| +. .++|+++.+|-+
T Consensus 233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 4455555 6678899999999999999999999988999999854 44444 22 258999887544
No 165
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=97.40 E-value=8.9e-05 Score=58.75 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=46.7
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMF 226 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff 226 (231)
.+++.+. .....+|||||||+|.++..+++. +.+++.+|+ |..++.++...+++++.+|+.
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~ 104 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYA 104 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHH
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHH
Confidence 3444443 334589999999999999999998 668999998 567777776677777777654
No 166
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.39 E-value=9.4e-05 Score=60.58 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=45.8
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
+..+|||||||+|..+..+++..| +.+++.+|. |..++.++++ ++|+++.+|..+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 142 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence 467999999999999999999998 789999998 5666666542 589999988653
No 167
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=97.38 E-value=4.7e-05 Score=65.39 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=47.1
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
....+|||||||+|.+++.+++..|..+++.+|+ |.+++.+++ .+|++++.+|.++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~ 185 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA 185 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH
Confidence 4568999999999999999999988899999998 567766653 2689999999754
No 168
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=97.38 E-value=0.00027 Score=57.01 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=51.3
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQNV 229 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~~ 229 (231)
.++...+ .....+|||+|||+|.++..+++. ..+++.+|. |..++.+++. ++++++.+|+.+..
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 153 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE 153 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence 4555566 667789999999999999999999 788999997 5566665541 68999999998754
No 169
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=97.37 E-value=0.00011 Score=60.24 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=46.9
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gDff~ 227 (231)
....+|||||||.|.++..+++.+|+.+++++|. |..++.+++. .++.++.+|+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~ 141 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHR 141 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhh
Confidence 3567999999999999999999999999999998 5566666543 678899988754
No 170
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.37 E-value=0.00024 Score=62.20 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=49.3
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeech-HHHhhCCCCCCceEeecCCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDLP-HVIQHAPKYPGVEHVGGDMFQNV 229 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gDff~~~ 229 (231)
..+++.++ .....+|+|+|||+|.++.++++++ +..+++.+|+. ..++.+ .+++++.+|+++..
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~ 94 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWE 94 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCC
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcC
Confidence 34445454 3345699999999999999999988 77899999984 455555 68899999988653
No 171
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.36 E-value=6e-05 Score=59.60 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=42.5
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY--------PGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gDff~ 227 (231)
..+|||+|||+|.++..++++.+ .+++.+|+. ..++.++.+ ++++++.+|+++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~ 115 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD 115 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH
T ss_pred CCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHH
Confidence 46899999999999999887754 579999984 677666542 589999999765
No 172
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.36 E-value=6.5e-05 Score=61.35 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=45.2
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
+..+|||||||+|..+..+++..| +.+++.+|+ |..++.+++ .++|+++.+|..+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 123 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 467999999999999999999997 789999998 445555543 2689999999754
No 173
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=97.36 E-value=6.1e-05 Score=64.27 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=45.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
...+|+|||||+|.+++++++..|..+++++|+ |.+++.+++ .+|++++.+|.++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~ 181 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK 181 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH
Confidence 457999999999999999999888999999998 567766542 2689999998754
No 174
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.35 E-value=0.00019 Score=59.44 Aligned_cols=54 Identities=6% Similarity=-0.016 Sum_probs=45.7
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----------CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY----------PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----------~ri~~~~gDff~ 227 (231)
....+|||||||+|.+++++++. + .+++++|+ |.+++.++++ +|++++.+|.++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~ 135 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL 135 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHH
Confidence 35689999999999999999998 8 89999998 5788887753 589999988764
No 175
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=97.35 E-value=0.00011 Score=62.22 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
....+|||||||.|.+++.+++..|..+++++|+ |.+++.+++ .+|++++.+|.++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 160 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLA 160 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence 4568999999999999999999888889999998 567766543 2689999998754
No 176
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.34 E-value=0.00012 Score=56.90 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=44.0
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
...+|+|+|||+|.++..+++. +..+++.+|+ |..++.++++ ++++++.+|+.+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 104 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAA 104 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHH
Confidence 4578999999999999988874 5668999998 6677777653 589999999754
No 177
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=97.33 E-value=0.00017 Score=61.97 Aligned_cols=63 Identities=17% Similarity=0.052 Sum_probs=48.9
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEeecCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
.+.+.+. ..+..+|||||||+|.++..++++ +..+++.+|..+.++.+++ .++|+++.+|+.+
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 110 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE 110 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhh
Confidence 4555554 445689999999999999999886 6678999999766655543 1689999999876
No 178
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.32 E-value=0.00013 Score=59.25 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=46.6
Q ss_pred CCCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.+..+|||||||+|..+..+++..| +.+++.+|. |..++.++++ ++|+++.+|.++
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 133 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 3567999999999999999999998 789999998 5667666542 579999998754
No 179
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.32 E-value=0.00011 Score=63.93 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=48.5
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
|.+..+|+|+|||+|.+++.+++..+..+++.+|+ |.+++.++.+ ++|+++.+|+.+
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~ 279 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ 279 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 45678999999999999999999998778999998 5677776652 589999999876
No 180
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.32 E-value=0.00022 Score=57.00 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=45.2
Q ss_pred CCCCceEEEccCC-hhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCC
Q 047000 171 FEHIQQLVDVGGC-LGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDM 225 (231)
Q Consensus 171 ~~~~~~vvDVGGG-~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDf 225 (231)
..+..+||||||| +|.++..+++.+ ..+++.+|. |..++.++.+ -+++++.+|+
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~ 113 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG 113 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 3567899999999 999999999997 788999998 5677776542 3799999995
No 181
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=97.31 E-value=0.0001 Score=59.33 Aligned_cols=54 Identities=9% Similarity=-0.036 Sum_probs=44.0
Q ss_pred CceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------C-CCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPK-------Y-PGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~-~ri~~~~gDff~ 227 (231)
..+|||||||+|..+..+++.+| +.+++.+|. |..++.+++ . ++|+++.+|..+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~ 120 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence 34999999999999999999986 889999998 456666543 2 489999998754
No 182
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.30 E-value=0.00034 Score=47.41 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=50.4
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSN 102 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~ 102 (231)
.+..|.+.|..+++|.++|+.+||+++| + +...+.+.|..|...|++...... ++.|...+...
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lg-v----sr~tV~~~L~~Le~~G~I~~~g~~----~~~W~i~~~~~ 74 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLG-T----PKKEINRVLYSLAKKGKLQKEAGT----PPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEESSS----SCEEEEC----
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEecCCC----CCeeEEeCcHH
Confidence 4667889998876666899999999999 9 999999999999999999874211 57787776554
No 183
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=97.28 E-value=0.00019 Score=59.96 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=43.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCC----------------CCCCceEeecCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAP----------------KYPGVEHVGGDMF 226 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~----------------~~~ri~~~~gDff 226 (231)
...+|||||||+|.+++.+++. |..+++++|+ |.+++.++ ..+|++++.+|.+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~ 144 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF 144 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchH
Confidence 4579999999999999999998 8889999998 56666543 2368899988864
No 184
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=97.28 E-value=0.00023 Score=57.20 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=43.5
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++. .+++++|. |..++.+++. .+++++.+|+.+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 90 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE 90 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh
Confidence 4589999999999999999987 78999998 6677776542 579999999865
No 185
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.28 E-value=0.00016 Score=58.58 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=45.8
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
+..+|||||||+|..+..+++.+| ..+++.+|. |..++.+++. ++|+++.+|+.+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 467999999999999999999998 789999998 6677666542 569999998754
No 186
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=97.27 E-value=0.00013 Score=61.12 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=46.4
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
....+|+|||||.|..++.+++..|..+++++|+ |.+++.+++ .+|++++.+|..+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 143 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK 143 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH
Confidence 3568999999999999999999888899999998 567766542 2689999998754
No 187
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.26 E-value=6.9e-05 Score=59.31 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=42.7
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
..+|||+|||+|.++..++++.. .+++.+|. |..++.++.+ ++++++.+|+.+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~ 114 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMS 114 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHH
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence 47899999999999999888754 37999998 5677766542 589999999765
No 188
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=97.26 E-value=0.00016 Score=61.10 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=46.9
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
....+|||||||+|.+++.++++.|..+++.+|+ |.+++.+++ .+|++++.+|.++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 160 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE 160 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence 4568999999999999999999988899999998 567766543 3689999998754
No 189
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.26 E-value=0.00012 Score=61.65 Aligned_cols=64 Identities=25% Similarity=0.362 Sum_probs=45.7
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEeecCCCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK------YPGVEHVGGDMFQN 228 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gDff~~ 228 (231)
..+++..+ .....+|||||||+|.++..++++ ..+++.+|+ |..++.++. .++++++.+|+.+-
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC
Confidence 34555555 566789999999999999999987 458999998 556665543 26899999998763
No 190
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.25 E-value=0.00021 Score=46.53 Aligned_cols=55 Identities=9% Similarity=0.281 Sum_probs=46.1
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLN 98 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t 98 (231)
+..|.+.|..++ .++|..|||+.+| + +...+.+.+..|...|++... . .|.|.++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lg-l----sr~tv~~~l~~L~~~G~I~~~--~----~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQ-V----PKKTLNQVLYRLKKEDRVSSP--S----PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHC-S----CHHHHHHHHHHHHHTTSEEEE--E----TTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEecC--C----CceEeeC
Confidence 556889998754 5899999999999 9 999999999999999998763 1 5677754
No 191
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.25 E-value=0.00017 Score=60.67 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=45.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|.++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 155 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE 155 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH
Confidence 457999999999999999999888899999998 567766543 3689999998654
No 192
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.25 E-value=8.7e-05 Score=59.90 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=41.7
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMF 226 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff 226 (231)
....+|||||||+|.++..+++..+. +++.+|+ |..++.+++. .+++++.+|+.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~ 118 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWE 118 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHH
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHH
Confidence 35679999999999999999775554 8899998 4566665542 57888888864
No 193
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.25 E-value=0.00028 Score=62.54 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=49.8
Q ss_pred HHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCC
Q 047000 164 ILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNV 229 (231)
Q Consensus 164 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~ 229 (231)
+++.++ ..+..+|+|+|||+|.++..+++. ..+++.+|. |..++.|+.+ ++++|+.+|+++.+
T Consensus 278 ~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 278 ALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred HHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence 334444 456679999999999999999998 678999998 5677776542 58999999998743
No 194
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.24 E-value=0.00032 Score=61.47 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=52.6
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCC--------------------------------------CeEEE
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPH--------------------------------------IKGIN 202 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v 202 (231)
+..++.... |.+...|+|.+||+|+++++.+....+ .+++.
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 445566666 888899999999999999998876544 56999
Q ss_pred eec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 203 FDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 203 ~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
+|. |.+++.|+.+ ++|+++.+|+++-
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~ 302 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADF 302 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGC
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhC
Confidence 998 5677766542 5799999999864
No 195
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=97.24 E-value=0.00019 Score=60.99 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=45.8
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gDff~ 227 (231)
...+|||||||.|.+++.+++..|..+++++|+ |.+++.+++ .+|++++.+|.++
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~ 143 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA 143 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHH
Confidence 457999999999999999999888899999998 566665542 3689999998754
No 196
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=97.23 E-value=0.00017 Score=59.73 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=48.0
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQN 228 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~~ 228 (231)
.+++.++ .....+|||||||+|.++..+++. +.+++.+|. |..++.++.. -+++++.+|+.+.
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 179 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAA 179 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGC
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccc
Confidence 3444443 335789999999999999999998 668999998 5567666542 2899999998763
No 197
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=97.22 E-value=0.0003 Score=56.00 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=43.7
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-------CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----Y-------PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~-------~ri~~~~gDff~ 227 (231)
....+|||||||+|.++..+++. +.+++.+|. |..++.++. . .+++++.+|+.+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 94 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS 94 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc
Confidence 35689999999999999999998 678999998 556665543 1 368999999875
No 198
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.21 E-value=0.0002 Score=56.27 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=43.7
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----C-CceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY----P-GVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~-ri~~~~gDff~ 227 (231)
....+|+|+|||+|.++..+++..+ .+++.+|. |..++.++.+ . +++++.+|+.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 108 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE 108 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH
Confidence 3567999999999999999998843 37999998 5677666542 2 79999999865
No 199
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=97.20 E-value=0.00038 Score=55.56 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=47.0
Q ss_pred CCCCceEEEccCChhHHHHHHHHHC-----CCCeEEEeec-hHHHhhCCC-----------CCCceEeecCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKY-----PHIKGINFDL-PHVIQHAPK-----------YPGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gDff~~ 228 (231)
.....+|||||||+|.++..+++.. |+.+++.+|. |..++.+++ .++++++.+|+.+.
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence 4556899999999999999999987 6789999998 556666543 25799999998764
No 200
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.19 E-value=0.00026 Score=47.48 Aligned_cols=61 Identities=16% Similarity=0.295 Sum_probs=49.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccch
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLND 99 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 99 (231)
.+..|++.|..++++.++|+.|||+++| + +...+.+.|..|...|++.... .. ++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lg-v----s~~tV~~~L~~L~~~G~I~~~g-~~---~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLG-T----PKKEINRVLYSLAKKGKLQKEA-GT---PPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHC-C----CHHHHHHHHHHHHHHTSEEEEC-SS---SCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEecC-CC---CCceEecC
Confidence 3567888998875445899999999999 9 9999999999999999998752 11 56776654
No 201
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.19 E-value=0.00027 Score=61.76 Aligned_cols=67 Identities=19% Similarity=0.079 Sum_probs=52.7
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCC--------------------------------------CCeEEE
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYP--------------------------------------HIKGIN 202 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--------------------------------------~l~~~v 202 (231)
+..++.... |.+...|+|++||+|.++++++.... ..+++.
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 445566566 88889999999999999999987633 267999
Q ss_pred eec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 203 FDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 203 ~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
+|. |.+++.|+.+ ++|++..+|+++-
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l 296 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQF 296 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGC
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhc
Confidence 998 5678777653 4799999999864
No 202
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=97.18 E-value=0.00016 Score=58.47 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=44.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++++ ..+++++|. |..++.+++. .+++++.+|+.+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 139 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD 139 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhh
Confidence 47899999999999999999987 568999998 5677766542 358899999754
No 203
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.17 E-value=0.00023 Score=60.53 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=45.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
...+|||||||.|..++.+++..|..+++++|+ |.+++.+++ .+|++++.+|.++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~ 173 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE 173 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHH
Confidence 457999999999999999999888999999998 567766542 2689999998754
No 204
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=97.17 E-value=0.00033 Score=60.92 Aligned_cols=62 Identities=16% Similarity=0.073 Sum_probs=47.7
Q ss_pred HHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEeecCCCC
Q 047000 164 ILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 164 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
+..... .....+|||||||+|.+++.++++. ..+++.+|....++.+++ .++|+++.+|+.+
T Consensus 55 i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 55 VFQNKH-HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVED 123 (376)
T ss_dssp HHTTTT-TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHhccc-cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhh
Confidence 333334 4567899999999999999999983 348999999866666554 2679999999865
No 205
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.15 E-value=0.00022 Score=57.59 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=44.8
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEeecCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMF 226 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff 226 (231)
+..+|||||||.|..+..+++..| +.+++.+|. |..++.+++. ++|+++.+|..
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 134 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL 134 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 457999999999999999999998 789999998 5566666542 57999999864
No 206
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=97.13 E-value=0.00025 Score=56.77 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=46.6
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCC------CCeEEEeec-hHHHhhCCC-----------CCCceEeecCCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYP------HIKGINFDL-PHVIQHAPK-----------YPGVEHVGGDMFQNV 229 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P------~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gDff~~~ 229 (231)
.....+|||||||+|.++..+++..+ ..+++.+|. |..++.+++ .++++++.+|..++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 158 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY 158 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC
Confidence 45567999999999999999999765 368999997 556666554 257999999987654
No 207
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.12 E-value=0.00021 Score=57.67 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++.. .+++.+|+ |..++.++.. ++++++.+|+.+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 138 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL 138 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH
Confidence 46799999999999999999984 78999998 5667666542 479999998764
No 208
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=97.11 E-value=0.00035 Score=54.65 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=42.4
Q ss_pred eEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCCC
Q 047000 176 QLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQN 228 (231)
Q Consensus 176 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~~ 228 (231)
+|||||||.|.++..+++. +.+++.+|. |..++.+++. .+++++.+|+.+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 88 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF 88 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc
Confidence 9999999999999999987 568999998 5677766643 3799999998763
No 209
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.11 E-value=0.00036 Score=58.19 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=43.6
Q ss_pred CCceEEEccCCh--hHHHHHH-HHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCL--GNTLKAI-TSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~--G~~~~~l-~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
+..+|||||||. +....++ .+.+|+.+++.+|. |.+++.++.. .+++|+.+|+.+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~ 142 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD 142 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence 578999999997 3344444 45689999999998 7899888752 479999999976
No 210
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.10 E-value=0.00082 Score=46.60 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=52.4
Q ss_pred HHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcc
Q 047000 24 MAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNY 103 (231)
Q Consensus 24 ~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~ 103 (231)
.+|..-.++.|++.| . +++|..+||+.++ + +...+.+.|+.|...|++.+. .+.|.+|+.+..
T Consensus 26 ~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~-i----s~~tv~~~L~~L~~~Glv~~~-------~g~y~l~~~g~~ 88 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D----KGRSEEEIMQTLS-L----SKKQLDYHLKVLEAGFCIERV-------GERWVVTDAGKI 88 (96)
T ss_dssp HHHSCHHHHHHHHHH-H----TTCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE-------TTEEEECTTTCC
T ss_pred HHhCCHHHHHHHHHH-c----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE-------CCEEEECCCchH
Confidence 344455677899999 5 5899999999999 9 999999999999999999973 358888887653
No 211
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.10 E-value=0.00049 Score=60.14 Aligned_cols=68 Identities=13% Similarity=-0.001 Sum_probs=52.9
Q ss_pred hHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCC--------------------------------------CeEE
Q 047000 160 VIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPH--------------------------------------IKGI 201 (231)
Q Consensus 160 ~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~ 201 (231)
.+..++.... |.+...|+|.+||+|+++++.+....+ .+++
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 3445666666 888899999999999999998876444 5699
Q ss_pred Eeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 202 NFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 202 v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
.+|. |.+++.++.+ ++|+++.+|+++-
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l 295 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDF 295 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGC
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHC
Confidence 9998 5577766542 5799999999864
No 212
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=97.10 E-value=0.00047 Score=57.06 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=44.8
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
....+|||||||+|.++..+++. +..+++++|+ |..++.++.. .+++++.+|+.+.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 126 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 126 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc
Confidence 45689999999999999998876 5668999998 5666666542 4689999999863
No 213
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=97.10 E-value=0.00038 Score=55.81 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=43.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++. +.+++++|. |..++.++.. .+++++.+|+.+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 95 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN 95 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 5679999999999999999998 467999998 6677776643 279999999865
No 214
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=97.10 E-value=0.00017 Score=59.87 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=42.1
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK----------YPGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gDff~ 227 (231)
.+..+|||||||+|.++..+++..+ +++.+|+ |..++.+++ ..++.+..+|+.+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 3567999999999999999999844 8999998 456666542 1578888888654
No 215
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.07 E-value=0.0004 Score=55.39 Aligned_cols=58 Identities=19% Similarity=0.120 Sum_probs=46.2
Q ss_pred CCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-----------CCCceEeecCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPK-----------YPGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gDff~~ 228 (231)
.....+|||||||+|.++..+++.. |+.+++.+|. |..++.++. .++++++.+|+.+.
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 3456799999999999999999985 7789999998 566666543 24799999997643
No 216
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.07 E-value=0.00058 Score=49.07 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=54.4
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhC--CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhc-cccC
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQL--PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSN-YFVP 106 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~--g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~-~L~~ 106 (231)
.+..|++.|.+. +++|+.+||+.+ + + ++..+.+-|+.|...|+++.. + .+.|++|+.+. +|..
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~g-i----S~~aVs~rL~~Le~~GLV~~~---~---rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIR-I----SKSSVSRRLKKLADHDLLQPL---A---NGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCC-S----CHHHHHHHHHHHHHTTSEEEC---S---TTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcC-C----CHHHHHHHHHHHHHCCCEEec---C---CceEEECchHHHHHHH
Confidence 356788999876 599999999999 9 9 999999999999999999984 2 46899999997 5544
Q ss_pred C
Q 047000 107 N 107 (231)
Q Consensus 107 ~ 107 (231)
.
T Consensus 80 ~ 80 (111)
T 3b73_A 80 E 80 (111)
T ss_dssp C
T ss_pred H
Confidence 3
No 217
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=97.04 E-value=0.0017 Score=54.58 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=52.8
Q ss_pred HHHHHHHHHhchhhhHHHHHHhCC-CCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--------
Q 047000 146 NEVFNIAMYNYTNLVIQKILEAYK-GFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------- 215 (231)
Q Consensus 146 ~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------- 215 (231)
.+.|+..+...- ...+++.+. ......+|||||||+|.++..+++. +..+++.+|+ |..++.++..
T Consensus 9 lr~~~~~~k~~l---~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 84 (313)
T 3bgv_A 9 LRNFNNWMKSVL---IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRR 84 (313)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred hhhccHHHHHHH---HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence 346666665522 223333221 1235679999999999999999884 6788999998 4566655432
Q ss_pred -----CCceEeecCCCCC
Q 047000 216 -----PGVEHVGGDMFQN 228 (231)
Q Consensus 216 -----~ri~~~~gDff~~ 228 (231)
.+++++.+|+.+.
T Consensus 85 ~~~~~~~~~~~~~D~~~~ 102 (313)
T 3bgv_A 85 DSEYIFSAEFITADSSKE 102 (313)
T ss_dssp CC-CCCEEEEEECCTTTS
T ss_pred cccccceEEEEEeccccc
Confidence 3789999998763
No 218
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=97.02 E-value=0.00047 Score=54.50 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=37.6
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPK 214 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~ 214 (231)
....+|+|+|||.|.++..++...|+.+.+..|.. ..++.++.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~ 91 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSS 91 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 45789999999999999999999999999999985 46666654
No 219
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=96.99 E-value=0.00035 Score=66.36 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=46.1
Q ss_pred CCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPK------------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~------------~~ri~~~~gDff~ 227 (231)
+..+|||||||+|.++..+++.. |..+++.+|+ |..++.|++ .++|+++.+|+.+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 56899999999999999999998 6679999998 556666543 2679999999876
No 220
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=96.98 E-value=0.00088 Score=55.42 Aligned_cols=51 Identities=6% Similarity=0.008 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK 214 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 214 (231)
...+++.++ .....+|||||||+|.++..++++ ..+++.+|. |..++.+++
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~ 85 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAE 85 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHH
Confidence 345566666 667789999999999999999987 468999998 456766654
No 221
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=96.98 E-value=0.00047 Score=60.07 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=41.9
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK-------YPGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gDff~ 227 (231)
.++|||||||+|.+++..+++.. -+++.+|..+.++.|++ .++|+++.+|+.+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~ 143 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVET 143 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred CCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeee
Confidence 57899999999999987777633 47899998766665543 2789999999865
No 222
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=96.95 E-value=0.00088 Score=55.48 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=41.8
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC--C------CceEe--ecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY--P------GVEHV--GGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~--~------ri~~~--~gDff~ 227 (231)
+....+|||||||+|.++..++++ -+++.+|+-+.+..+++. . +|+++ .+|+++
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~ 135 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT 135 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH
Confidence 556789999999999999999988 579999986643333221 2 68899 899875
No 223
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=96.94 E-value=0.00079 Score=55.09 Aligned_cols=57 Identities=11% Similarity=-0.048 Sum_probs=46.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEeecCCCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPK-----YPGVEHVGGDMFQNVP 230 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gDff~~~P 230 (231)
+....+|+|||||.|-++..+. |..+.+.+|+. ..++.++. ..+.++..+|+....|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~ 165 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP 165 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC
Confidence 4567899999999999999988 99999999985 56666654 2678899999987644
No 224
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.91 E-value=0.0013 Score=54.93 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--CCceEeecCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY--PGVEHVGGDMF 226 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--~ri~~~~gDff 226 (231)
...+++.+. ......+||++||.|.++.+|+++ +.+.+.+|. |..++.+++. +|++++.+||-
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~ 76 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFR 76 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcc
Confidence 346667666 667789999999999999999998 789999998 4566544322 68999999884
No 225
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=96.90 E-value=0.00078 Score=56.14 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=31.6
Q ss_pred CceEEEccCChhH----HHHHHHHHCC----CCeEEEeec-hHHHhhCC
Q 047000 174 IQQLVDVGGCLGN----TLKAITSKYP----HIKGINFDL-PHVIQHAP 213 (231)
Q Consensus 174 ~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~v~Dl-p~vi~~a~ 213 (231)
..+|+|+|||+|. +++.+++..| +.+++..|+ +.+++.|+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar 154 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKAR 154 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHH
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHH
Confidence 4789999999998 6777787766 468999998 45666654
No 226
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.90 E-value=0.00056 Score=58.02 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=47.8
Q ss_pred HhCCCCCCCceEEEccCChhHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 166 EAYKGFEHIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 166 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
..++ .....+|||+|||+|..+..+++..+ ..+++.+|+ |..++.++++ ++|+++.+|+.+
T Consensus 112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~ 180 (315)
T 1ixk_A 112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180 (315)
T ss_dssp HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhh
Confidence 3445 56678999999999999999999975 488999998 4556665542 578999988764
No 227
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=96.89 E-value=0.00042 Score=54.31 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=42.0
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..++.. ++.+++.+|. |..++.++.. .+++++.+|+.+
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 82 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRK 82 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhh
Confidence 4679999999999986555544 5779999998 5666666542 679999999875
No 228
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=96.87 E-value=0.00076 Score=56.22 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=41.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCC--C------CceEe--ecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKY--P------GVEHV--GGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~--~------ri~~~--~gDff~ 227 (231)
+....+|||||||+|.++..++++ -+++.+|+-+.+..+++. . +|+++ .+|+.+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~ 143 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK 143 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh
Confidence 556789999999999999999988 579999986643333221 2 68899 889864
No 229
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=96.85 E-value=0.00074 Score=58.90 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=45.3
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQNV 229 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~~~ 229 (231)
...+|+|+|||+|.++..+++. +.+++.+|. |..++.++.+ -.++++.+|+++..
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL 293 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc
Confidence 4579999999999999999998 568999998 5677776653 35999999998753
No 230
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=96.83 E-value=0.0008 Score=56.21 Aligned_cols=57 Identities=14% Similarity=0.030 Sum_probs=46.3
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEeecCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-------YPGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gDff~~ 228 (231)
+.+..+|||+|||+|.+++.++++ ...+++.+|+ |..++.+++ .++|+++.+|.++-
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~ 187 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF 187 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh
Confidence 346789999999999999999987 4578999998 566666654 27899999998763
No 231
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=96.82 E-value=0.00033 Score=58.05 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=49.5
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEeecCCCCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY-----PGVEHVGGDMFQNVPK 231 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gDff~~~P~ 231 (231)
....+|+|||||.|-++..+...+|..+.+.+|.. ..++.++.+ .+.++...|+..+.|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~ 196 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLD 196 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCC
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCC
Confidence 35789999999999999999999999999999985 456655542 5588899999887553
No 232
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.79 E-value=0.00081 Score=55.98 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=49.6
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
-+.|++.|...+ +++|+.|||+.+| + +...+.|+|..|+..|++++. . +++|.+++....|
T Consensus 32 al~IL~~l~~~~--~~ltl~eia~~lg-l----~ksTv~RlL~tL~~~G~v~~~---~---~~~Y~LG~~~~~l 92 (275)
T 3mq0_A 32 AVRILDLVAGSP--RDLTAAELTRFLD-L----PKSSAHGLLAVMTELDLLARS---A---DGTLRIGPHSLRW 92 (275)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHT-C----C--CHHHHHHHHHHTTSEEEC---T---TSEEEECTHHHHH
T ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEC---C---CCcEEehHHHHHH
Confidence 356899998764 5899999999999 9 999999999999999999984 2 5789998875433
No 233
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=96.79 E-value=0.00061 Score=56.49 Aligned_cols=56 Identities=7% Similarity=0.026 Sum_probs=45.2
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCC-CeEEEeech-HHHhhCCC------CCCceEeecCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPH-IKGINFDLP-HVIQHAPK------YPGVEHVGGDMF 226 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~------~~ri~~~~gDff 226 (231)
.....+|+|+|||+|..+..+++..++ .+++.+|.. ..++.+++ .++++++.+|+.
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~ 144 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMR 144 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHH
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChH
Confidence 456789999999999999999999887 889999984 45655543 257899888864
No 234
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=96.77 E-value=0.0011 Score=54.73 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=42.8
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechH--------HHhhCCCC-------CCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPH--------VIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~--------vi~~a~~~-------~ri~~~~gDff~ 227 (231)
.....+|||+|||+|.++..+++. ..+++.+|+.+ .++.++.+ +||+++.+|..+
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~ 150 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE 150 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH
Confidence 344578999999999999999996 56899999854 44545432 579999998754
No 235
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=96.76 E-value=0.0011 Score=55.86 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=47.5
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEeecCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK-----------YPGVEHVGGDMFQN 228 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gDff~~ 228 (231)
.+.++||=||||.|..++++++..|--+++++|+ |.|++.+++ .+|++++.+|-++-
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~ 150 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF 150 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH
Confidence 3678999999999999999999888888999998 567776543 27899999887763
No 236
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.76 E-value=0.0012 Score=44.37 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=50.9
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcc-hHHHHHHHHHhCCcccccccCCCCcCcccccchhhc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPM-MLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSN 102 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~-~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~ 102 (231)
.+-.|.+.|... +|.|+.+||+.+| + .+. .+++.|..|...|+|+... .+ ...|.+|+.++
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lg-i----t~~~aVr~hL~~Le~eGlV~~~~-~g---RP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIG-L----TKARDINAVLIDMERQGDVYRQG-TT---PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHC-G----GGHHHHHHHHHHHHHTTSEEEEC-SS---SCEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcC-C----CcHHHHHHHHHHHHHCCCEEecC-CC---CCCeEeCHhHH
Confidence 455688889887 5999999999999 9 998 9999999999999998642 12 34899998875
No 237
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.73 E-value=0.0019 Score=47.31 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=48.4
Q ss_pred hHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccccCCCCCCch
Q 047000 34 VFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFVPNKDGSYR 113 (231)
Q Consensus 34 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~~~~~~~~~ 113 (231)
+...|....++++.|.++||+.++ + ++..++++|+.|...|+++..... .|.|.++.-. .....
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~-i----~~~~v~~il~~L~~~Glv~~~~g~----~ggy~L~~~~-------~~itl 77 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNN-L----SEHYLEQLVSPLRNAGLVKSIRGA----YGGYVLGSEP-------DAITA 77 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTT-S----CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCG-------GGCBH
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCceEecCCC----CCceEeCCCH-------HHCcH
Confidence 444454431226899999999999 9 999999999999999999874211 3567765422 12234
Q ss_pred hhHHHHHh
Q 047000 114 SQLKEAIT 121 (231)
Q Consensus 114 ~~L~~~l~ 121 (231)
.++.+++.
T Consensus 78 ~di~~~~e 85 (129)
T 2y75_A 78 GDIIRVLE 85 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55566664
No 238
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=96.70 E-value=0.00099 Score=57.60 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=44.6
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--------------CCceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY--------------PGVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--------------~ri~~~~gDff~ 227 (231)
.+.++|||||||.|.+++++++..| .+++++|+ |.|++.++++ +|++++.+|.++
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~ 256 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP 256 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHH
Confidence 3578999999999999999998866 78999998 5677766532 279999988664
No 239
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=96.69 E-value=0.0023 Score=52.01 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=45.6
Q ss_pred CCCCceEEEccCChhHHHHHHHHH-CCCCeEEEeechH-H----HhhCCCCCCceEeecCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSK-YPHIKGINFDLPH-V----IQHAPKYPGVEHVGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp~-v----i~~a~~~~ri~~~~gDff~~ 228 (231)
+....+|+|+|||+|.++..+++. .|+-+++.+|+-+ . ++.++...+|.++.+|...+
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~ 137 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFP 137 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCG
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccc
Confidence 567899999999999999999987 4688999999854 2 34444446789998887653
No 240
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=96.64 E-value=0.0014 Score=53.50 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=40.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff~ 227 (231)
...+|||||||+|.++..+++. +.+++++|. |..++.++....-.++.+|+.+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~ 107 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAED 107 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHH
Confidence 5679999999999999999987 568999998 5666666543111277777654
No 241
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=96.63 E-value=0.0067 Score=49.24 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=44.9
Q ss_pred CCCCceEEEccCChhHHHHHHHHH-CCCCeEEEeec-hHHHhh----CCCCCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSK-YPHIKGINFDL-PHVIQH----APKYPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~----a~~~~ri~~~~gDff~ 227 (231)
.+...+|+|+|||+|.++..+++. -|+=+++.+|. |..++. ++...+|..+.+|.-.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~ 137 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARF 137 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccC
Confidence 678899999999999999999998 48889999997 445544 3444667777776654
No 242
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=96.59 E-value=0.0014 Score=51.98 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=38.4
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff~ 227 (231)
..+|||||||+|.++..+++. +.+|. |..++.++.. +++++.+|+.+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~ 95 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAEN 95 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTB
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEccccc
Confidence 679999999999999998876 88898 5666666655 78888888754
No 243
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=96.59 E-value=0.0011 Score=56.77 Aligned_cols=54 Identities=20% Similarity=0.135 Sum_probs=44.3
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
....+|+|+|||+|.++.. ++ ...+++.+|+ |..++.++.+ ++++++.+|.++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~ 255 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV 255 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh
Confidence 3568999999999999999 77 4778999998 6777776542 5799999998763
No 244
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=96.55 E-value=0.0013 Score=51.65 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=40.3
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCC-eEEEeec-hHHHhhCCCC-CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHI-KGINFDL-PHVIQHAPKY-PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~vi~~a~~~-~ri~~~~gDff~ 227 (231)
...+|+|||||+|.++..+ +. +++.+|. |..++.+++. ++++++.+|+.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~ 88 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEA 88 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTS
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEccccc
Confidence 6689999999999999888 45 8999998 4566666553 788898888765
No 245
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=96.54 E-value=0.0018 Score=54.71 Aligned_cols=54 Identities=20% Similarity=0.136 Sum_probs=41.1
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-----hHHHhhCC--CC--CCceEeec-CCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-----PHVIQHAP--KY--PGVEHVGG-DMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~vi~~a~--~~--~ri~~~~g-Dff~ 227 (231)
+....+|||||||+|.++..++++ -+++.+|+ +..++..+ .. ++|+++.+ |+++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~ 143 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF 143 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecccccc
Confidence 456789999999999999999998 36888898 53333222 12 67999999 8875
No 246
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.54 E-value=0.0041 Score=50.33 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=34.0
Q ss_pred HHHHhCCCCC-CCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhh
Q 047000 163 KILEAYKGFE-HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQH 211 (231)
Q Consensus 163 ~~~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~ 211 (231)
.+++.++ .. ...+|||||||+|.++..++++ ...+++.+|+- ..++.
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~ 75 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAW 75 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCH
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHH
Confidence 3444454 32 4579999999999999999988 33489999984 34433
No 247
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=96.54 E-value=0.0012 Score=56.41 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=46.6
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCC-----CeEEEeec-hHHHhhCCCC-----CCceEeecCCCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPH-----IKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQNV 229 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~-----l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~~~ 229 (231)
....+|+|+|||+|.++..+++..|. .+++++|+ |..++.++.. -++.++.+|.+++.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~ 197 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL 197 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc
Confidence 35689999999999999999999875 67899998 5566665542 36899999998764
No 248
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=96.53 E-value=0.0004 Score=56.47 Aligned_cols=41 Identities=12% Similarity=-0.056 Sum_probs=33.4
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAP 213 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 213 (231)
.+..+|||||||+|.++..+++..+ .+++.+|. |..++.++
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~ 96 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQ 96 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHH
Confidence 4568999999999999999998876 67899998 45566554
No 249
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=96.53 E-value=0.00083 Score=57.47 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=43.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------C-CceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------P-GVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~-ri~~~~gDff~ 227 (231)
+..+|||+|||+|.++..+++... +++.+|+ |..++.++++ + +++++.+|+++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~ 214 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK 214 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHH
Confidence 456999999999999999999754 8999998 5677766542 2 59999999865
No 250
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=96.52 E-value=0.0025 Score=55.91 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=41.4
Q ss_pred CCceEEEccCC------hhHHHHHHHHH-CCCCeEEEeechHHHhhCCCCCCceEeecCCCC
Q 047000 173 HIQQLVDVGGC------LGNTLKAITSK-YPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG------~G~~~~~l~~~-~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gDff~ 227 (231)
+..+||||||| +|..+..++++ +|+.+++.+|+-+... ...++|+|+.+|+.+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--~~~~rI~fv~GDa~d 275 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--VDELRIRTIQGDQND 275 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--GCBTTEEEEECCTTC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--hcCCCcEEEEecccc
Confidence 45799999999 66677777766 5999999999954332 245899999999865
No 251
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=96.48 E-value=0.0024 Score=55.86 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY 215 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~ 215 (231)
+..+++.++ .....+|||||||+|.++..++++ +.+++.+|.. ..++.+++.
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK 148 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc
Confidence 445667666 667789999999999999999987 4589999985 566666543
No 252
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.48 E-value=0.0035 Score=43.74 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=43.7
Q ss_pred HHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 25 AMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 25 ~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+|.--.++.|+..|.. ++.|..|||+.+| + ++..+.+.|+.|...|+++..
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~-i----s~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIG-I----GQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp HHCSHHHHHHHHHHHT----CCBCHHHHHHHHT-C----CTTHHHHHHHHHHHTTSEEEE
T ss_pred HcCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 4444566778888865 5899999999999 9 999999999999999999875
No 253
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.47 E-value=0.0021 Score=60.40 Aligned_cols=67 Identities=18% Similarity=-0.019 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHH------------------------------------------CCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSK------------------------------------------YPHI 198 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~------------------------------------------~P~l 198 (231)
+..++.... |.....|+|.+||+|+++++.+.. .|+.
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 345556566 888889999999999999998765 2456
Q ss_pred eEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 199 KGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 199 ~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
+++.+|. |.+++.|+.+ ++|++..+|+++-
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~ 295 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQL 295 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGC
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 8999998 5677776653 5699999999764
No 254
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=96.46 E-value=0.0014 Score=60.00 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=40.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDM 225 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDf 225 (231)
+..+|||||||.|.++..+++. +.+++++|+ +..|+.|+.+ -.|+|..+|.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 123 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRI 123 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCH
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCH
Confidence 5679999999999999999998 778999998 4567766542 2477776654
No 255
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.44 E-value=0.0028 Score=56.05 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=44.9
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQNVP 230 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~~~P 230 (231)
+..+|+|+|||+|.++..+++. ..+++.+|. |..++.++.+ + ++|+.+|+++..|
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~ 351 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV 351 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc
Confidence 5679999999999999999987 458999998 5677776642 4 9999999987543
No 256
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=96.43 E-value=0.0031 Score=52.36 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=32.6
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec--hHHHhhCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL--PHVIQHAP 213 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl--p~vi~~a~ 213 (231)
....+|||||||+|.++..+++.. ..+++.+|+ |.+++.++
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~ 120 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLE 120 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHH
Confidence 356799999999999999888863 348999999 56666543
No 257
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.42 E-value=0.0021 Score=52.32 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=50.8
Q ss_pred hChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcccc
Q 047000 32 LGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFV 105 (231)
Q Consensus 32 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~ 105 (231)
+.|++.|...+ +++|+.|||+.+| + +...+.|+|..|...|++++.+ . +++|++++....|.
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~g-l----~~stv~r~l~~L~~~G~v~~~~--~---~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVG-L----PRSTVQRIINALEEEFLVEALG--P---AGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTT-S----CHHHHHHHHHHHHTTTSEEECG--G---GCEEEECSHHHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEeC--C---CCeEEECHHHHHHH
Confidence 45778887653 5899999999999 9 9999999999999999999842 1 47899988765443
No 258
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=96.39 E-value=0.0025 Score=56.63 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=48.9
Q ss_pred HHHhCCCCCCCceEEEccCChhHHHHHHHHHCCC-CeEEEeech-HHHhhCCC------CCCceEeecCCCC
Q 047000 164 ILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPH-IKGINFDLP-HVIQHAPK------YPGVEHVGGDMFQ 227 (231)
Q Consensus 164 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~------~~ri~~~~gDff~ 227 (231)
+...++ .....+|+|+|||.|..+..+++..++ .+++.+|.. ..++.++. .++|+++.+|+.+
T Consensus 251 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~ 321 (450)
T 2yxl_A 251 ASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARK 321 (450)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTC
T ss_pred HHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhh
Confidence 334445 566789999999999999999999987 889999985 44555443 2578999999865
No 259
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=96.38 E-value=0.0037 Score=51.92 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCceEEEccCChhHHHH----HHHHHCCCCeE--EEeech-HHHhhCC
Q 047000 173 HIQQLVDVGGCLGNTLK----AITSKYPHIKG--INFDLP-HVIQHAP 213 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~----~l~~~~P~l~~--~v~Dlp-~vi~~a~ 213 (231)
...+|||||||+|.++. .++.++|+.++ +++|.. ..++.++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~ 99 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK 99 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHH
Confidence 45799999999997554 55667898864 999974 4555443
No 260
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.34 E-value=0.004 Score=50.83 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=49.5
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSN 102 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~ 102 (231)
-+.|++.|...+ +++|+.|||+.+| + +...+.|+|+.|...|++++. . .+.|.+++...
T Consensus 10 ~l~iL~~l~~~~--~~~~~~ela~~~g-l----~~stv~r~l~~L~~~G~v~~~---~---~~~Y~lg~~~~ 68 (249)
T 1mkm_A 10 AFEILDFIVKNP--GDVSVSEIAEKFN-M----SVSNAYKYMVVLEEKGFVLRK---K---DKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHHCS--SCBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEC---T---TSCEEECTHHH
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEC---C---CCcEEECHHHH
Confidence 345778887653 4899999999999 9 999999999999999999984 2 57899988654
No 261
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=96.34 E-value=0.0042 Score=48.86 Aligned_cols=44 Identities=20% Similarity=0.036 Sum_probs=33.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gDff~ 227 (231)
.....+|||||||+|.++..+. .+++.+|..+. +++++.+|+.+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~ 108 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQ 108 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTS
T ss_pred cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEecccc
Confidence 3456899999999999998883 57888888544 56677777654
No 262
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.33 E-value=0.01 Score=50.70 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=53.1
Q ss_pred HHHHHHhCCCCCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC--CCCceEeecCCC
Q 047000 161 IQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDL-PHVIQHAPK--YPGVEHVGGDMF 226 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~--~~ri~~~~gDff 226 (231)
...+++.+. ......+||..+|.|..+.+|+++. |+.+.+.+|. |.+++.++. .+|++++.++|-
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFS 114 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHH
Confidence 346677776 6677899999999999999999995 8899999998 457777643 278999999874
No 263
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.33 E-value=0.003 Score=43.51 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=53.4
Q ss_pred HHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhc
Q 047000 24 MAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSN 102 (231)
Q Consensus 24 ~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~ 102 (231)
.++..-.++.|+..|... +++|..+||+.++ + ++..+.+.|+.|...|+++.....++.....|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~-i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLD-L----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 455566788888888754 5899999999999 9 999999999999999999964211000023577887764
No 264
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.31 E-value=0.0097 Score=43.68 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=46.5
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
..++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.++.+
T Consensus 37 ~~~~~vL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~L~~~Glv~r~~~~~---DrR~~~~~LT~~G~~~ 104 (142)
T 3ech_A 37 PPDVHVLKLIDEQ---RGLNLQDLGRQMC-R----DKALITRKIRELEGRNLVRRERNPS---DQRSFQLFLTDEGLAI 104 (142)
T ss_dssp HHHHHHHHHHHHT---TTCCHHHHHHHHC--------CHHHHHHHHHHHTTSEEC-------------CCEECHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEeeccCCC---CCCeeeeEECHHHHHH
Confidence 4566788888876 5899999999999 9 9999999999999999999853211 22 36677777643
No 265
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.31 E-value=0.0037 Score=44.34 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=47.1
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhh
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVS 101 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s 101 (231)
-.++.|+..|.. ++.|..+||+.++ + ++..+.+.|+.|...|+++...... ...|.+|+.+
T Consensus 21 ~~r~~IL~~L~~----~~~~~~ela~~l~-i----s~~tv~~~l~~L~~~gli~~~~~gr---~~~y~l~~~~ 81 (114)
T 2oqg_A 21 ETRWEILTELGR----ADQSASSLATRLP-V----SRQAIAKHLNALQACGLVESVKVGR---EIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHHHH----SCBCHHHHHHHSS-S----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEECSHH
T ss_pred hHHHHHHHHHHc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeeEEecCC---EEEEEechHH
Confidence 356778888844 5899999999999 9 9999999999999999998742100 1237777655
No 266
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.31 E-value=0.0027 Score=43.77 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=49.4
Q ss_pred HHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhh
Q 047000 26 MQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVS 101 (231)
Q Consensus 26 L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s 101 (231)
|..-.++.|+..|... ++.|..|||+.++ + ++..+.+.|+.|...|++....... ...|.+|+..
T Consensus 21 l~~~~~~~il~~l~~~---~~~s~~ela~~l~-i----s~~tvs~~l~~L~~~glv~~~~~~r---~~~y~l~~~~ 85 (99)
T 3cuo_A 21 MSHPKRLLILCMLSGS---PGTSAGELTRITG-L----SASATSQHLARMRDEGLIDSQRDAQ---RILYSIKNEA 85 (99)
T ss_dssp HCSHHHHHHHHHHTTC---CSEEHHHHHHHHC-C----CHHHHHHHHHHHHHTTSEEEEECSS---CEEEEECCHH
T ss_pred hCChHHHHHHHHHHhC---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEecCC---EEEEEEChHH
Confidence 3344567788888763 5899999999999 9 9999999999999999999753110 1246666654
No 267
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.20 E-value=0.0041 Score=42.01 Aligned_cols=60 Identities=17% Similarity=0.085 Sum_probs=47.4
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhh
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVS 101 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s 101 (231)
.....|.+.|..+ ++|+.|||+++| + +...+++.|..|...|++...... +-.|.++...
T Consensus 17 ~~~~~IL~lL~~~----g~sa~eLAk~Lg-i----Sk~aVr~~L~~Le~eG~I~~~~~~----PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE----GATAAQLTRQLN-M----EKREVNKALYDLQRSAMVYSSDDI----PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS----TEEHHHHHHHSS-S----CHHHHHHHHHHHHHHTSSEECSSS----SCEEESCC--
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEeCCCC----CCcceeccCc
Confidence 3456678888863 499999999999 9 999999999999999999985321 5677776654
No 268
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.19 E-value=0.0027 Score=43.96 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 25 AMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 25 ~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+|.--.++.|+..|.+ ++.|..|||+.+| + +...+.+.|+.|...|+++..
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~-i----s~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 19 AMANERRLQILCMLHN----QELSVGELCAKLQ-L----SQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHCSHHHHHHHHHTTT----SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCHHHHHHHHHHhc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 4444556778888876 5899999999999 9 999999999999999999875
No 269
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.17 E-value=0.0049 Score=44.67 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 23 PMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 23 ~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
..+|.--.++.|+..|... ++.|..+||+.+| + +...+.+.|+.|...|++...
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~-i----s~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILG-V----TIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 3344445677899999864 5899999999999 9 999999999999999999874
No 270
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.16 E-value=0.0071 Score=45.22 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=45.8
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccccCCCCCCchhhHHHHHh
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFVPNKDGSYRSQLKEAIT 121 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~L~~~l~ 121 (231)
++.|.++||+.++ + ++..|+++|..|...|+++...+. +|.|.+.. +.......++.+++.
T Consensus 27 ~~~s~~~IA~~~~-i----~~~~l~kil~~L~~aGlv~s~rG~----~GGy~Lar-------~p~~Itl~dV~~ave 87 (143)
T 3t8r_A 27 GCISLKSIAEENN-L----SDLYLEQLVGPLRNAGLIRSVRGA----KGGYQLRV-------PAEEISAGDIIRLLE 87 (143)
T ss_dssp CCEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEECSSS----SSEEEESS-------CGGGCBHHHHHHHHH
T ss_pred CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCEEEecCCC----CCCeeecC-------CcccCCHHHHHHHhC
Confidence 5899999999999 9 999999999999999999865321 46676543 332234555666664
No 271
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=96.13 E-value=0.0061 Score=46.51 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=47.2
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccccCCCCCCchhhHHHHHh
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFVPNKDGSYRSQLKEAIT 121 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~L~~~l~ 121 (231)
++.|.++||+.++ + ++..|+++|..|...|+++..++. +|.|.++ ++.......++.+++.
T Consensus 43 ~~~s~~eIA~~~~-i----~~~~l~kil~~L~~aGlv~s~rG~----~GGy~La-------r~p~eItL~dVi~avE 103 (159)
T 3lwf_A 43 GPISLRSIAQDKN-L----SEHYLEQLIGPLRNAGIVKSIRGA----HGGYVLN-------GDPEKITAGDIIRTLE 103 (159)
T ss_dssp CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEECST----TCEEEEC-------SCTTTCBHHHHHHHHS
T ss_pred CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCeEEEecCC----CCceEec-------CCHHHCCHHHHHHHHc
Confidence 6899999999999 9 999999999999999999975321 4667653 3433345666667764
No 272
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.13 E-value=0.0037 Score=45.01 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=51.2
Q ss_pred HHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhh
Q 047000 24 MAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVS 101 (231)
Q Consensus 24 ~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s 101 (231)
.+|.--.++.|+..|.. +|.+..+||+.+| + +...+.+.|+.|...|++....... .-.|++|+..
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~-i----s~~tvs~hL~~L~~~GlV~~~~~gr---~~~y~l~~~~ 78 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFD-M----ALPSFMKHIHFLEDSGWIRTHKQGR---VRTCAIEKEP 78 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCC-S----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEECSHH
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhC-c----CHHHHHHHHHHHHHCCCeEEEecCC---EEEEEECHHH
Confidence 44555577888888885 6899999999999 9 9999999999999999998753100 1346666644
No 273
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.10 E-value=0.002 Score=56.22 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=44.0
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~ 227 (231)
+..+|+|+|||+|.++..+++. +..+++.+|+ |..++.++.+ ++++++.+|+++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~ 278 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE 278 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHH
Confidence 5689999999999999999987 4458999998 5677766542 279999999764
No 274
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.10 E-value=0.0013 Score=54.15 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=49.4
Q ss_pred hChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 32 LGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 32 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
+.|++.|...+ +++|+.|||+++| + +...+.|+|..|...|++++.. . .++|++++....|
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lg-l----~ksT~~RlL~tL~~~G~v~~~~--~---~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSG-M----NKATVYRLMSELQEAGFVEQVE--G---ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHC-S----CHHHHHHHHHHHHHTTSEEECS--S---SSEEEECTTHHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEcC--C---CCcEEcCHHHHHH
Confidence 34667776532 6899999999999 9 9999999999999999999852 1 3789998875443
No 275
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=96.09 E-value=0.0017 Score=56.58 Aligned_cols=55 Identities=11% Similarity=-0.025 Sum_probs=43.7
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C--CceEeecCCCC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------P--GVEHVGGDMFQ 227 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~--ri~~~~gDff~ 227 (231)
.+..+|||+|||+|.++..+++.. .-+++.+|+ |..++.++++ + +++++.+|.++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~ 274 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD 274 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH
Confidence 356799999999999999999863 237899998 5677766542 3 89999999865
No 276
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=96.07 E-value=0.005 Score=53.35 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=47.7
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEeecCCCCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPKYPGVEHVGGDMFQNVP 230 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gDff~~~P 230 (231)
+....++||+|++.|.+...++++ +.+++.+|.-+.-......++|+++.+|.|+..|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~ 266 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRP 266 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccC
Confidence 356789999999999999999998 6899999975444444556899999999998655
No 277
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.03 E-value=0.009 Score=42.16 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhC-CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcc
Q 047000 45 AKLSASEIAAQL-PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNY 103 (231)
Q Consensus 45 ~~~t~~eLA~~~-g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~ 103 (231)
++.+..||++.+ + + ++..+.+.|+.|...|++++.....+.-.-.|.+|+.+..
T Consensus 26 ~~~~~~eLa~~l~~-i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~ 80 (107)
T 2hzt_A 26 GKKRTSELKRLMPN-I----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRS 80 (107)
T ss_dssp CCBCHHHHHHHCTT-S----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGG
T ss_pred CCCCHHHHHHHhcC-C----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHH
Confidence 589999999999 9 9 9999999999999999999854211000124888887754
No 278
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.01 E-value=0.0017 Score=56.51 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=44.0
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
+..+|+|+|||+|.++..+++. ..+++.+|. |..++.++.+ +.++++.+|.++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~ 268 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD 268 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHH
Confidence 5689999999999999999998 667899998 6677776542 458999999764
No 279
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.00 E-value=0.0083 Score=40.12 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=40.0
Q ss_pred ChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 33 GVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 33 glfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.|.+.|... +.++++|||+.++ + ++..++|.|..|...|++.+.
T Consensus 6 ~Il~~L~~~---g~vsv~eLa~~l~-V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALR---GRMEAAQISQTLN-T----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHS---CSBCHHHHHHHTT-C----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc---CCCcHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEe
Confidence 367788876 5999999999999 9 999999999999999999985
No 280
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=95.96 E-value=0.0055 Score=52.95 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=41.4
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY------PGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff~ 227 (231)
..+|+|+|||+|.++..+++.. -+++.+|. |..++.++.+ ++++|+.+|.++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 3679999999999999998864 47899997 5577766542 679999998754
No 281
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.94 E-value=0.0082 Score=41.03 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=40.2
Q ss_pred ChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 33 GVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 33 glfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.|.+.|... +.++++|||+.++ + ++..++|.|..|...|++.+.
T Consensus 6 ~Il~~L~~~---g~vsv~eLA~~l~-V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQ---GRMEAKQLSARLQ-T----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHS---CSEEHHHHHHHTT-C----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHc---CCCcHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 367788876 6999999999999 9 999999999999999999985
No 282
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.92 E-value=0.0029 Score=51.96 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=49.9
Q ss_pred hChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccccC
Q 047000 32 LGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFVP 106 (231)
Q Consensus 32 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~~ 106 (231)
+.|++.|...+ +++|+.|||+.+| + +...+.|+|..|...|++++. ++.|++++....|..
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~g-l----~~stv~r~l~~L~~~G~v~~~-------~~~Y~Lg~~~~~l~~ 77 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAG-L----SRPAVRRILLTLQKLGYVAGS-------GGRWSLTPRVLSIGQ 77 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE-------TTEEEECGGGHHHHT
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEeC-------CCEEEEcHHHHHHHH
Confidence 34666666433 5899999999999 9 999999999999999999983 578999887654443
No 283
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.91 E-value=0.03 Score=41.01 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=50.5
Q ss_pred HHHhhChHHHHHh-cCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhccc
Q 047000 28 AVIGLGVFEIIAK-AGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYF 104 (231)
Q Consensus 28 ~a~~lglfd~L~~-~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L 104 (231)
...++.|+..|.. . +++|..+||+.++ + +...+.++++.|...|++++..... +. .-.+.+|+.+..+
T Consensus 34 ~~~~~~iL~~l~~~~---~~~~~~~la~~l~-i----~~~~vs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~ 103 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLG---GDVTPSELAAAER-M----RSSNLAALLRELERGGLIVRHADPQ-DGRRTRVSLSSEGRRN 103 (147)
T ss_dssp HHHHHHHHHHHHHTT---SCBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEC-------CCEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHcC---CCCCHHHHHHHhC-C----ChhhHHHHHHHHHHCCCEeeCCCCC-CCCceeeEECHHHHHH
Confidence 3456778888876 5 5899999999999 9 9999999999999999999853111 00 1126677776643
No 284
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=95.91 E-value=0.0035 Score=55.14 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=43.1
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEeecCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY--------PGVEHVGGDMFQN 228 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gDff~~ 228 (231)
...+|+|+|||+|..+..+++. ..+++.+|.. ..++.++.+ ++|+++.+|+++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~ 155 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEY 155 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGS
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHh
Confidence 3689999999999999999987 4689999984 556555432 5799999998863
No 285
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.88 E-value=0.0057 Score=43.09 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=43.5
Q ss_pred HHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 25 AMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 25 ~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+|..-.++.|+..|.. ++.|..+||+.+| + +...+.+.|+.|...|++...
T Consensus 22 ~l~~~~r~~IL~~L~~----~~~~~~ela~~l~-i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSV----SEASVGHISHQLN-L----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HTCSHHHHHHHHHHHH----CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 3334456778888885 5899999999999 9 999999999999999999975
No 286
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=95.86 E-value=0.0081 Score=52.97 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=47.4
Q ss_pred HHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEeecCCCC
Q 047000 165 LEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 165 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
...++ .....+|+|+|||+|..+..+++..|+.+++.+|.. ..++.++++ -+++++.+|+.+
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~ 306 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY 306 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhh
Confidence 34444 456789999999999999999999999899999984 445444331 257888888865
No 287
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=95.83 E-value=0.015 Score=48.79 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHHHhCCCCC-CCceEEEccCChhHHHHHHHHHCCCCeEEEeech
Q 047000 163 KILEAYKGFE-HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP 206 (231)
Q Consensus 163 ~~~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 206 (231)
.+++.+. .. ...++||||||+|.++..+++. +.-+++.+|+-
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs 117 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVG 117 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSS
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECC
Confidence 4455555 43 4579999999999999999887 55689999984
No 288
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.77 E-value=0.006 Score=43.95 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchh
Q 047000 24 MAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDV 100 (231)
Q Consensus 24 ~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 100 (231)
.+|.--.++.|+..|.. ++.+..+||+.+| + ++..+.+.|+.|...|++.... ++ ..-.|++|+.
T Consensus 16 ~aL~~~~r~~IL~~L~~----~~~~~~eLa~~lg-i----s~stvs~~L~~L~~~GlV~~~~-~g--r~~~y~l~~~ 80 (118)
T 2jsc_A 16 RALADPTRCRILVALLD----GVCYPGQLAAHLG-L----TRSNVSNHLSCLRGCGLVVATY-EG--RQVRYALADS 80 (118)
T ss_dssp HHHSSHHHHHHHHHHHT----TCCSTTTHHHHHS-S----CHHHHHHHHHHHTTTTSEEEEE-CS--SSEEEEESSH
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCceEEEE-EC--CEEEEEEChH
Confidence 34444556778888875 5899999999999 9 9999999999999999998742 11 0124666654
No 289
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=95.77 E-value=0.0068 Score=53.72 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=47.6
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHC-------------CCCeEEEeec-hHHHhhCCCC------C--CceE
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKY-------------PHIKGINFDL-PHVIQHAPKY------P--GVEH 220 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~v~Dl-p~vi~~a~~~------~--ri~~ 220 (231)
.+++... .....+|+|.|||+|.++..+++.. +..+++++|+ |.+++.++.+ . ++.+
T Consensus 162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i 240 (445)
T 2okc_A 162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI 240 (445)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCE
Confidence 3444444 3456789999999999999998764 5678999998 5566655431 2 6888
Q ss_pred eecCCCCC
Q 047000 221 VGGDMFQN 228 (231)
Q Consensus 221 ~~gDff~~ 228 (231)
+.+|.+..
T Consensus 241 ~~gD~l~~ 248 (445)
T 2okc_A 241 VCEDSLEK 248 (445)
T ss_dssp EECCTTTS
T ss_pred eeCCCCCC
Confidence 99998864
No 290
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=95.74 E-value=0.006 Score=51.28 Aligned_cols=41 Identities=10% Similarity=0.006 Sum_probs=31.8
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPK 214 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 214 (231)
...+|||||||+|..+..+++.. ..+++++|+ +..++.|+.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~ 89 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNE 89 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHH
Confidence 46799999999998777766643 467999998 457777765
No 291
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.73 E-value=0.051 Score=39.66 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=48.3
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|. . +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 38 ~~~~iL~~l~-~---~~~~~~ela~~l~-~----s~~tvs~~l~~Le~~glv~r~~~~~---d~r~~~~~lT~~G~~~ 103 (146)
T 2gxg_A 38 LDFLVLRATS-D---GPKTMAYLANRYF-V----TQSAITASVDKLEEMGLVVRVRDRE---DRRKILIEITEKGLET 103 (146)
T ss_dssp HHHHHHHHHT-T---SCBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEECSS---CTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHh-c---CCcCHHHHHHHhC-C----CchhHHHHHHHHHHCCCEEeecCCC---CCceEEEEECHHHHHH
Confidence 3455677777 4 6999999999999 9 9999999999999999999753211 22 36677776643
No 292
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.71 E-value=0.0033 Score=51.89 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=49.1
Q ss_pred hChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcccc
Q 047000 32 LGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFV 105 (231)
Q Consensus 32 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~ 105 (231)
+.|++.|...+ +++|+.|||+.+| + +...+.|+|..|...|++++. +++|++++....|.
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~g-l----~~stv~r~l~tL~~~G~v~~~-------~~~Y~Lg~~~~~lg 83 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATD-L----TRATARRFLLTLVELGYVATD-------GSAFWLTPRVLELG 83 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEES-------SSEEEECGGGGGTT
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEec-------CCEEEEcHHHHHHH
Confidence 45667776432 5899999999999 9 999999999999999999983 67899988765443
No 293
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.71 E-value=0.0028 Score=44.95 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=41.2
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.-.++.|+..|.. +++|..|||+.+| + ++..+.+.|+.|...|+++..
T Consensus 24 ~~~r~~IL~~L~~----~~~s~~eLa~~lg-i----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 24 NGRRLQILDLLAQ----GERAVEAIATATG-M----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TSTTHHHHHHHTT----CCEEHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHc----CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 3345667777765 5899999999999 9 999999999999999999874
No 294
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.65 E-value=0.0095 Score=42.44 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=53.4
Q ss_pred HHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCC--HHHHHHhC-CCCCCCCCcchHHHHHHHHHhCCccccccc
Q 047000 10 FAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLS--ASEIAAQL-PATKNKDAPMMLDRMLRLLASHSAVECSID 86 (231)
Q Consensus 10 ~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t--~~eLA~~~-g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~ 86 (231)
...+++++.+.+... |...|.. ++.+ ..||++.+ | + ++..|.+.|+.|...|++++...
T Consensus 17 ~~~~l~~l~~~wrl~---------IL~~L~~----g~~~~~~~eL~~~l~g-i----s~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 17 SESVLHLLGKKYTML---------IISVLGN----GSTRQNFNDIRSSIPG-I----SSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp TSSTHHHHHSTTHHH---------HHHHHTS----SSSCBCHHHHHHTSTT-C----CHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHcCccHHH---------HHHHHhc----CCCCCCHHHHHHHccC-C----CHHHHHHHHHHHHHCCCEEEeec
Confidence 344455555555444 4445553 5777 99999999 9 9 99999999999999999998531
Q ss_pred CCCCcCcccccchhhccc
Q 047000 87 DADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 87 ~~~~~~~~y~~t~~s~~L 104 (231)
- .-.|++|+.++.+
T Consensus 79 -r---~~~y~LT~~G~~l 92 (111)
T 3df8_A 79 -Q---ITTYALTEKGMNV 92 (111)
T ss_dssp -S---SEEEEECHHHHHH
T ss_pred -C---cEEEEECccHHHH
Confidence 1 3468899887643
No 295
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.63 E-value=0.026 Score=42.32 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=49.9
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYFV 105 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L~ 105 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... +. .-.+.+|+.++.+.
T Consensus 54 ~q~~vL~~l~~~---~~~t~~eLa~~l~-~----~~~~vs~~l~~Le~~Glv~r~~~~~-DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY---GELTVGQLATLGV-M----EQSTTSRTVDQLVDEGLAARSISDA-DQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEECC----CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeeCCcc-cCCeeEeeECHHHHHHH
Confidence 345578888775 5899999999999 9 9999999999999999999853211 00 12366777776433
No 296
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.61 E-value=0.0046 Score=50.89 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=47.3
Q ss_pred hChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcc
Q 047000 32 LGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNY 103 (231)
Q Consensus 32 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~ 103 (231)
+.|++.|...+ +++|+.|||+.+| + +...+.|+|+.|...|++++.. .++|.+++....
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~g-l----~kstv~r~l~tL~~~G~v~~~~------~~~Y~lg~~~~~ 84 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTK-L----PKTTVVRLVATMCARSVLTSRA------DGSYSLGPEMLR 84 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHC-C----CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEECC------CCeEEecHHHHH
Confidence 34566665422 5899999999999 9 9999999999999999999841 348999876543
No 297
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=95.61 E-value=0.0032 Score=54.92 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=43.3
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------C-CceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-------P-GVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~-ri~~~~gDff~ 227 (231)
+..+|+|+|||+|.++..+++.. ..+++.+|+ |..++.++.+ + +++++.+|.++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~ 282 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK 282 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHH
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH
Confidence 46799999999999999999975 457999998 5677666542 2 78999999765
No 298
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.60 E-value=0.0089 Score=41.30 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=48.3
Q ss_pred hhChHHHHHhcCCCCCCCHHHH----HHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEI----AAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eL----A~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
++.|+..|... +++|..+| |+.++ + ++..+.++++.|...|++++..... ...|.+|+.+..+
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~-i----s~~tvs~~l~~Le~~gli~r~~~~r---~~~~~LT~~G~~~ 76 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFP-M----STATFYDAKKFLIQEGFVKERQERG---EKRLYLTEKGKLF 76 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSC-C----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEECHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHCCCEEEEecCC---ceEEEECHHHHHH
Confidence 44566777664 58999999 99999 9 9999999999999999999853111 2357777777643
No 299
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.58 E-value=0.013 Score=41.68 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=45.6
Q ss_pred hHHHHHhcCCCCCCCHHHHHHhC-CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcc
Q 047000 34 VFEIIAKAGPGAKLSASEIAAQL-PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNY 103 (231)
Q Consensus 34 lfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~ 103 (231)
|...|.. ++++..+||+.+ + + ++..+.+.|+.|...|++++.....+.-.-.|.+|+.+..
T Consensus 27 IL~~L~~----~~~~~~eLa~~l~~-i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~ 88 (112)
T 1z7u_A 27 LMDELFQ----GTKRNGELMRALDG-I----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYA 88 (112)
T ss_dssp HHHHHHH----SCBCHHHHHHHSTT-C----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHH
T ss_pred HHHHHHh----CCCCHHHHHHHhcc-C----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHH
Confidence 4445554 489999999999 9 9 9999999999999999999853211000124888888763
No 300
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.58 E-value=0.012 Score=40.91 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=42.1
Q ss_pred CCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 47 LSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 47 ~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
++..+||..++ + +++.+.+.++.|...|++++. .+.|.+|+.+..+
T Consensus 21 ~~~t~La~~~~-l----s~~~~~~~l~~L~~~GLI~~~-------~~~~~LT~kG~~~ 66 (95)
T 1r7j_A 21 SPKTRIMYGAN-L----SYALTGRYIKMLMDLEIIRQE-------GKQYMLTKKGEEL 66 (95)
T ss_dssp BCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHH
T ss_pred CCHHHHHHHhC-c----CHHHHHHHHHHHHHCCCeEEE-------CCeeEEChhHHHH
Confidence 99999999999 9 999999999999999999984 4679999999743
No 301
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.55 E-value=0.02 Score=43.76 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccccCCCCCCchhhHHHHHhcC
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFVPNKDGSYRSQLKEAITEG 123 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~L~~~l~~g 123 (231)
+++|.++||+.++ + ++..|+++|..|...|+++-.+.. +|.|.+.. +.......++.+++..+
T Consensus 27 ~~~s~~~IA~~~~-i----s~~~l~kil~~L~~aGlv~s~rG~----~GGy~Lar-------~p~~Itl~dIi~ave~~ 89 (162)
T 3k69_A 27 SKVASRELAQSLH-L----NPVMIRNILSVLHKHGYLTGTVGK----NGGYQLDL-------ALADMNLGDLYDLTIPP 89 (162)
T ss_dssp SCBCHHHHHHHHT-S----CGGGTHHHHHHHHHTTSSEEECST----TCEEECCS-------CGGGSBHHHHHHHHSCC
T ss_pred CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEeecCC----CCCeEecC-------ChhhCcHHHHHHHHccC
Confidence 6899999999999 9 999999999999999999865321 45687654 22223455666666533
No 302
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.54 E-value=0.0073 Score=45.63 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchh
Q 047000 21 VLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDV 100 (231)
Q Consensus 21 ~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 100 (231)
-...+|.--.++.|+..|.. +++|+.+||+.++ + +...+.+-|+.|...|+|+...... .-.|++|+.
T Consensus 50 ~~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lg-l----s~stvs~hL~~L~~aGlV~~~~~Gr---~~~y~lt~~ 117 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFP-A----SRSAISQHLRVLTEAGLVTPRKDGR---FRYYRLDPQ 117 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSS-S----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEECHH
T ss_pred HHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEEecCC---EEEEEEChH
Confidence 34566777788999999985 6899999999999 9 9999999999999999999753100 125778776
Q ss_pred hc
Q 047000 101 SN 102 (231)
Q Consensus 101 s~ 102 (231)
..
T Consensus 118 ~~ 119 (151)
T 3f6v_A 118 GL 119 (151)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 303
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=95.53 E-value=0.0014 Score=53.81 Aligned_cols=40 Identities=10% Similarity=-0.095 Sum_probs=28.2
Q ss_pred CCCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHA 212 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a 212 (231)
.+..+|||||||+|.++..+++..- -+++.+|+. ..++.+
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a 94 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREEL 94 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHH
Confidence 3568999999999988766554421 258999984 455544
No 304
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.49 E-value=0.012 Score=39.28 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=39.3
Q ss_pred hChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 32 LGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 32 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
..|++.|... +++|..|||+.+| + +...+.+.|..|...|++..
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lg-v----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALA-V----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHT-S----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEE
Confidence 4577788775 5899999999999 9 99999999999999999985
No 305
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.011 Score=48.39 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=53.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcccc-CCC
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFV-PNK 108 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~-~~~ 108 (231)
.++.|...|..+ +++|..|||+.++ + +...+.|.|..|...|++++.. . ...|.+|+.+..+. ...
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lg-l----sksTv~r~L~~Le~~GlV~r~~-r----~~~~~LT~~G~~l~~~~~ 219 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLD-K----SEKTLINKIAELKKFGILTQKG-K----DRKVELNELGLNVIKLNK 219 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET-T----TTEEEECHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEeC-C----ccEEEECHHHHHHHHHHh
Confidence 455677787665 5899999999999 9 9999999999999999999852 1 46799999997543 233
Q ss_pred CCCchhhHHHHH
Q 047000 109 DGSYRSQLKEAI 120 (231)
Q Consensus 109 ~~~~~~~L~~~l 120 (231)
....|....+-+
T Consensus 220 ~~~~w~~aq~~~ 231 (244)
T 2wte_A 220 SVIESSKSSEEL 231 (244)
T ss_dssp ------------
T ss_pred cccccHHHHHHH
Confidence 233477655544
No 306
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.46 E-value=0.014 Score=42.93 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=43.6
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFV 105 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~ 105 (231)
+++|..+||+.++ + ++..+.++++.|...|++++.. .+.|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~-v----s~~tvs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALA-V----HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEee------CceEEEchhHHHHH
Confidence 5899999999999 9 9999999999999999999841 46789999886443
No 307
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=95.46 E-value=0.011 Score=48.80 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=45.3
Q ss_pred HHHHhCCCCCCC--ceEEEccCChhHHHHHHHHHCCCCeEEEeechHH--------HhhCCC-------C-CCceEeecC
Q 047000 163 KILEAYKGFEHI--QQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHV--------IQHAPK-------Y-PGVEHVGGD 224 (231)
Q Consensus 163 ~~~~~~~~~~~~--~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~a~~-------~-~ri~~~~gD 224 (231)
.+.+... ..+. .+|||+|||.|..+..++++ +.+++.+|.-+. ++.++. . +||+++.+|
T Consensus 77 ~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp HHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 4555554 4455 79999999999999999998 568999998653 333321 1 478899888
Q ss_pred CCC
Q 047000 225 MFQ 227 (231)
Q Consensus 225 ff~ 227 (231)
.++
T Consensus 154 ~~~ 156 (258)
T 2oyr_A 154 SLT 156 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 308
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.46 E-value=0.028 Score=41.36 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=49.1
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYF 104 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L 104 (231)
..++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... +. .-.+.+|+.+..+
T Consensus 40 ~~~~~iL~~l~~~---~~~t~~ela~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~-D~R~~~~~lT~~G~~~ 107 (148)
T 3nrv_A 40 MTEWRIISVLSSA---SDCSVQKISDILG-L----DKAAVSRTVKKLEEKKYIEVNGHSE-DKRTYAINLTEMGQEL 107 (148)
T ss_dssp HHHHHHHHHHHHS---SSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEC----------CCBEECHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeecCCC-CcceeEeEECHhHHHH
Confidence 3456688888876 5999999999999 9 9999999999999999999853111 00 1246777776643
No 309
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.46 E-value=0.049 Score=40.15 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=48.0
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYFV 105 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L~ 105 (231)
.++.|...|...+ +++|..+||+.++ + ++..+.+++..|...|++++..... ++ .+.+|+.+..+.
T Consensus 40 ~q~~vL~~l~~~~--~~~t~~eLa~~l~-i----~~~tvs~~l~~Le~~Glv~r~~~~~---D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQA--EGVNQRGVAATMG-L----DPSQIVGLVDELEERGLVVRTLDPS---DRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHST--TCCCSHHHHHHHT-C----CHHHHHHHHHHHHTTTSEEC--------------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCcCHHHHHHHHC-C----CHhHHHHHHHHHHHCCCEEeeCCcc---ccchheeeECHHHHHHH
Confidence 4556777787643 5799999999999 9 9999999999999999999853211 22 267787776433
No 310
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.34 E-value=0.018 Score=42.24 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=50.9
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~---D~R~~~~~LT~~G~~~ 98 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWS-L----PKQTVSGVCKTLAGQGLIEWQEGEQ---DRRKRLLSLTETGKAY 98 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECCCSS---CGGGSCEEECHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeeccCCC---CCceeeeeEChhHHHH
Confidence 456688888776 4899999999999 9 9999999999999999999853211 22 37788877644
No 311
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.32 E-value=0.023 Score=42.65 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=50.9
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYFV 105 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L~ 105 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+.
T Consensus 47 ~q~~iL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAK---PNLSNAKLAERSF-I----KPQSANKILQDLLANGWIEKAPDPT---HGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CGGGHHHHHHHHHHTTSEEEEECCS---SSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCcCeEecCCCC---cCCeeEeEECHhHHHHH
Confidence 345688888876 5899999999999 9 9999999999999999999864211 22 367787776433
No 312
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.28 E-value=0.015 Score=38.73 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=38.6
Q ss_pred hHHHHHhc-----CCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 34 VFEIIAKA-----GPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 34 lfd~L~~~-----g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
|++.|... | +|.|+.|||+.+| + ++..+++-|..|...|++...
T Consensus 9 IL~~I~~~i~~~~g--~~psv~EIa~~lg-v----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDG--APVKTRDIADAAG-L----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTT--SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccC--CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEec
Confidence 55666554 4 6999999999999 9 999999999999999999985
No 313
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.25 E-value=0.013 Score=42.51 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=42.5
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
--.++.|+..|.. ++.+..+||+.+| + +...+.+.|+.|...|++...
T Consensus 45 ~~~rl~IL~~L~~----~~~s~~ela~~lg-i----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 45 DPNRLRLLSLLAR----SELCVGDLAQAIG-V----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp CHHHHHHHHHHTT----CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 3356788888875 5899999999999 9 999999999999999999974
No 314
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.25 E-value=0.017 Score=41.99 Aligned_cols=64 Identities=8% Similarity=0.095 Sum_probs=50.2
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .|.+|+.+..+
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~-~----~~~tvs~~l~~L~~~glv~r~~~~~---d~R~~~~~lT~~G~~~ 105 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTA-M----DAATIKGVVERLDKRGLIQRSADPD---DGRRLLVSLSPAGRAE 105 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTCEEEEEETT---EEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeeCCCC---CCCeeeeEECHhHHHH
Confidence 456688888775 5899999999999 9 9999999999999999999853111 22 36777777643
No 315
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.24 E-value=0.02 Score=41.45 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=49.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .|.+|+.+..+
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~-~----~~~tvs~~l~~L~~~gli~r~~~~~---d~r~~~~~lT~~G~~~ 100 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMG-C----VPSNMTTMIQRMKRDGYVMTEKNPN---DQRETLVYLTKKGEET 100 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCS-S----CCTTHHHHHHHHHHTTSEEEEECSS---CTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHC-C----ChhHHHHHHHHHHHCCCeeeccCCC---CCceeEEEECHHHHHH
Confidence 455678888775 5899999999999 9 9999999999999999999853111 22 26677777643
No 316
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.20 E-value=0.023 Score=41.88 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhC-CCCCCCCCcchHHHHHHHHHhCCcccccccC
Q 047000 9 SFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQL-PATKNKDAPMMLDRMLRLLASHSAVECSIDD 87 (231)
Q Consensus 9 ~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~ 87 (231)
+...+++++.+.|...+|. .|.. ++.+..||++.+ + + ++..|.+.|+.|...|++++....
T Consensus 15 pi~~~l~~lg~kW~l~IL~---------~L~~----g~~rf~eL~~~l~g-I----s~~~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFY---------HMID----GKKRFNEFRRICPS-I----TQRMLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHH---------HHTT----SCBCHHHHHHHCTT-S----CHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cHHHHHHHHcCcCHHHHHH---------HHhc----CCcCHHHHHHHhcc-c----CHHHHHHHHHHHHHCCCEEEEecC
Confidence 4555666666666655543 3333 589999999999 9 9 999999999999999999986321
Q ss_pred CCCcCcccccchhhcccc
Q 047000 88 ADDSQRLYGLNDVSNYFV 105 (231)
Q Consensus 88 ~~~~~~~y~~t~~s~~L~ 105 (231)
.+.-.-.|++|+.++.|.
T Consensus 77 ~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 77 QVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSSCEEEEEECTTGGGGH
T ss_pred CCCCeEEEEECHhHHHHH
Confidence 100012589999887554
No 317
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.20 E-value=0.017 Score=40.70 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhC-CCCCCCCCcchHHHHHHHHHhCCcccccccC
Q 047000 9 SFAYANQLVTASVLPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQL-PATKNKDAPMMLDRMLRLLASHSAVECSIDD 87 (231)
Q Consensus 9 ~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~ 87 (231)
+...+++++.+.+.... ...|.. ++++..||++.+ | + ++..+.+.|+.|...|++++....
T Consensus 14 ~~~~~l~~l~~~~~~~I---------L~~L~~----~~~~~~eL~~~l~g-i----s~~~ls~~L~~Le~~GlV~r~~~~ 75 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLI---------IFQINR----RIIRYGELKRAIPG-I----SEKMLIDELKFLCGKGLIKKKQYP 75 (107)
T ss_dssp HHHHHHHHHTSSSHHHH---------HHHHTT----SCEEHHHHHHHSTT-C----CHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CHHHHHHHHcCccHHHH---------HHHHHh----CCcCHHHHHHHccc-C----CHHHHHHHHHHHHHCCCEEEeecC
Confidence 34455555555555443 334543 589999999999 8 8 999999999999999999985321
Q ss_pred CCCcCcccccchhhccc
Q 047000 88 ADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 88 ~~~~~~~y~~t~~s~~L 104 (231)
.+.-.-.|.+|+.++.+
T Consensus 76 ~d~r~~~y~LT~~G~~l 92 (107)
T 2fsw_A 76 EVPPRVEYSLTPLGEKV 92 (107)
T ss_dssp SSSCEEEEEECHHHHTT
T ss_pred CCCCeeEEEECccHHHH
Confidence 10001248999987643
No 318
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=95.18 E-value=0.014 Score=42.30 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=41.9
Q ss_pred HhhChHHHHHhcCCCCC-CCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAK-LSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~-~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.+..|+..|...+ +| +|..|||+.++ + +...+.|.|..|...|++.+.
T Consensus 27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~-~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEP--DRWIDTDALSKSLK-L----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHST--TCCEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC--CCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEee
Confidence 3566888888754 56 99999999999 9 999999999999999999974
No 319
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.17 E-value=0.021 Score=41.39 Aligned_cols=64 Identities=23% Similarity=0.161 Sum_probs=49.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.++..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 35 ~~~~iL~~l~~~---~~~~~~~la~~l~-~----~~~tvs~~l~~L~~~gli~r~~~~~---d~R~~~~~lT~~G~~~ 101 (138)
T 1jgs_A 35 AQFKVLCSIRCA---ACITPVELKKVLS-V----DLGALTRMLDRLVCKGWVERLPNPN---DKRGVLVKLTTGGAAI 101 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECTT---CSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHC-C----ChHHHHHHHHHHHHCCCEEecCCcc---cCceeEeEEChhHHHH
Confidence 345577778765 5899999999999 9 9999999999999999999853211 22 26778777643
No 320
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=95.16 E-value=0.024 Score=47.81 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=45.0
Q ss_pred CCCCceEEEccCChhHHHHHHHHHC-CCCeEEEeech-HHHhhCCC------CCCceEeecCCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKY-PHIKGINFDLP-HVIQHAPK------YPGVEHVGGDMFQ 227 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gDff~ 227 (231)
.....+|+|+|+|.|..+..+++.. +.-+++.+|+- ..++.+++ ..+|+++.+|+.+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~ 164 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 164 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHh
Confidence 4567899999999999999999985 56789999984 45555543 2579999999765
No 321
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=95.15 E-value=0.012 Score=52.58 Aligned_cols=55 Identities=5% Similarity=0.023 Sum_probs=43.2
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCC-CeEEEeec-hHHHhhCCCC------CCceEeecCCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPH-IKGINFDL-PHVIQHAPKY------PGVEHVGGDMF 226 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~~------~ri~~~~gDff 226 (231)
.....+|||+|||+|..+..+++..++ -+++.+|+ |..++.++++ . |+++.+|..
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~ 161 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPR 161 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHH
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHH
Confidence 456789999999999999999999876 68999998 4456555442 4 888888753
No 322
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=95.12 E-value=0.0044 Score=51.29 Aligned_cols=40 Identities=13% Similarity=-0.046 Sum_probs=29.0
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAP 213 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 213 (231)
...+|||||||+|.++ .++...+..+++.+|+ |..++.++
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~ 111 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELG 111 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHH
Confidence 4679999999999943 4444445669999998 45665443
No 323
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=95.07 E-value=0.015 Score=50.55 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=40.7
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--------------CCceEeecCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY--------------PGVEHVGGDMF 226 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--------------~ri~~~~gDff 226 (231)
..++||=||||.|..++++++. |.-+++++|+ |.|++.++++ +|++++.+|-+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~ 272 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCI 272 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHH
Confidence 4689999999999999999985 5578999998 5677765431 45777766643
No 324
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.01 E-value=0.015 Score=42.55 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYF 104 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L 104 (231)
..++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... +. .-.+.+|+.+..+
T Consensus 37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~-~----~~~~vs~~l~~L~~~Glv~r~~~~~-D~R~~~~~LT~~G~~~ 104 (143)
T 3oop_A 37 PEQWSVLEGIEAN---EPISQKEIALWTK-K----DTPTVNRIVDVLLRKELIVREISTE-DRRISLLSLTDKGRKE 104 (143)
T ss_dssp HHHHHHHHHHHHH---SSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEC-----CCSCEEEECHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHC-C----CHhhHHHHHHHHHHCCCeeccCCCc-cCceeeeeECHHHHHH
Confidence 3455678888775 5899999999999 9 9999999999999999999853211 00 1236677777643
No 325
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.00 E-value=0.018 Score=41.68 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=49.0
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNY 103 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~ 103 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..
T Consensus 30 ~~~~iL~~l~~~---~~~~~~ela~~l~-~----s~~tvs~~l~~L~~~glv~~~~~~~---d~R~~~~~lT~~G~~ 95 (138)
T 3bpv_A 30 AQVACLLRIHRE---PGIKQDELATFFH-V----DKGTIARTLRRLEESGFIEREQDPE---NRRRYILEVTRRGEE 95 (138)
T ss_dssp HHHHHHHHHHHS---TTCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeecCCC---CceeEEeeECHhHHH
Confidence 455677788775 5899999999999 9 9999999999999999999853111 22 2667777654
No 326
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.96 E-value=0.027 Score=40.90 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=52.2
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYFV 105 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L~ 105 (231)
.++.|+..|... +++|..+||+.++ + ++..+.+.++.|...|++++..... +. .-.|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~-i----s~~~vs~~l~~L~~~gli~~~~~~~-d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQ-I----DRAAVTRHLKLLEESGYIIRKRNPD-NQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECSS-STTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEecCCCC-CCCeeEEEECHHHHHHH
Confidence 455688888775 5899999999999 9 9999999999999999999853211 00 12488898887555
No 327
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.96 E-value=0.023 Score=41.81 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=48.1
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNY 103 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~ 103 (231)
++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... ++ .+.+|+.+..
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~---d~R~~~~~lT~~G~~ 108 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMY-L----ACSTTTDLVDRMERNGLVARVRDEH---DRRVVRIRLLEKGER 108 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECCC------CEEEEECHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC-C----CchhHHHHHHHHHHCCCeeecCCCC---CcceeEeEECHhHHH
Confidence 45577788775 5899999999999 9 9999999999999999999853111 22 3667777664
No 328
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.96 E-value=0.015 Score=43.72 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccch
Q 047000 22 LPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLND 99 (231)
Q Consensus 22 ~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 99 (231)
...+|++.+.+... . + ++.|.++||+.++ + ++..++++|..|...|+++... + .|.|.++.
T Consensus 13 ~~yAl~~L~~La~~----~-~--~~~~~~~iA~~~~-i----~~~~l~kil~~L~~~Glv~s~r--G---~GGy~L~~ 73 (149)
T 1ylf_A 13 FSIAVHILSILKNN----P-S--SLCTSDYMAESVN-T----NPVVIRKIMSYLKQAGFVYVNR--G---PGGAGLLK 73 (149)
T ss_dssp HHHHHHHHHHHHHS----C-G--GGCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEC--------CCEEESS
T ss_pred HHHHHHHHHHHHhC----C-C--CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEcc--C---CCceEeCC
Confidence 33466666555331 1 1 5899999999999 9 9999999999999999998742 2 45565544
No 329
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.93 E-value=0.051 Score=40.16 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=48.2
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNY 103 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~ 103 (231)
++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~-~----s~~tvs~~l~~Le~~glv~r~~~~~---d~R~~~~~lT~~G~~ 103 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERME-V----KPSAVTLMADRLEQKNLIARTHNTK---DRRVIDLSLTDEGDI 103 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEECSS---CTTSEEEEECHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeecCCCC---CCceEEEEECHHHHH
Confidence 44577888765 5899999999999 9 9999999999999999999853211 12 3667776654
No 330
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=94.93 E-value=0.01 Score=55.81 Aligned_cols=54 Identities=7% Similarity=0.061 Sum_probs=42.6
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP-HVIQHAPKY--------PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gDff~ 227 (231)
...+|||+|||+|.++..+++... -+++.+|+. ..++.++++ ++++++.+|.|+
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~ 601 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA 601 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHH
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence 357999999999999999998543 369999984 566666542 489999999875
No 331
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.92 E-value=0.028 Score=41.97 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=42.8
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
++.+..||++.++ + ++..+.+.|+.|...|++++.....+. .-.|.+|+.++.+
T Consensus 36 g~~~~~eLa~~lg-i----s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l 89 (146)
T 2f2e_A 36 GLTRFGEFQKSLG-L----AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRAL 89 (146)
T ss_dssp TCCSHHHHHHHHC-C----CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTT
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHH
Confidence 5899999999999 9 999999999999999999986321100 1258888877643
No 332
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.89 E-value=0.031 Score=40.85 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=47.2
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L 104 (231)
++.|...|... +++|..+||+.++ + ++..+.++++.|...|++++..... +. .-.+.+|+.++.+
T Consensus 38 q~~vL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~L~~~Glv~r~~~~~-D~R~~~~~LT~~G~~~ 103 (140)
T 3hsr_A 38 GYIVLMAIEND---EKLNIKKLGERVF-L----DSGTLTPLLKKLEKKDYVVRTREEK-DERNLQISLTEQGKAI 103 (140)
T ss_dssp HHHHHHHSCTT---CEEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEC--------CEEEECHHHHHT
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCeEecCCCC-CcceeeeeEChHHHHH
Confidence 34455666554 6999999999999 9 9999999999999999999863211 00 1246778877643
No 333
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.88 E-value=0.025 Score=39.06 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=41.4
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.++.|+..|... +++|..+||+.++ + ++..+.+.|+.|...|++...
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~-i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELD-L----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677788765 5899999999999 9 999999999999999999984
No 334
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.87 E-value=0.023 Score=42.25 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=48.0
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L 104 (231)
++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... +. .-.+.+|+.+..+
T Consensus 45 ~~~iL~~l~~~---~~~t~~ela~~l~-i----~~~tvs~~l~~Le~~Glv~r~~~~~-d~R~~~~~lT~~G~~~ 110 (155)
T 3cdh_A 45 EWRVLACLVDN---DAMMITRLAKLSL-M----EQSRMTRIVDQMDARGLVTRVADAK-DKRRVRVRLTDDGRAL 110 (155)
T ss_dssp HHHHHHHHSSC---SCBCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEECC-------CCCEEECHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeccCCC-cCCeeEeEECHHHHHH
Confidence 45577777664 5899999999999 9 9999999999999999999753111 00 1236777777643
No 335
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=94.85 E-value=0.011 Score=51.78 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=39.5
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAPKY-----PGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gDff~ 227 (231)
...+|||+|||+|.++..+++.. .+++.+|+ |..++.++++ -..++..+|.++
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~ 272 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALP 272 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHH
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHH
Confidence 37899999999999999999984 44999998 4566666542 113466777664
No 336
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=94.84 E-value=0.017 Score=53.53 Aligned_cols=88 Identities=20% Similarity=0.171 Sum_probs=53.1
Q ss_pred cccCCCCchHHHHHHHHHHhchhhhHHHHHHhCC---CCCCCceEEEccCChhHHHHHHH---HH-CCCCeEEEeechHH
Q 047000 136 FEYPGLDPRFNEVFNIAMYNYTNLVIQKILEAYK---GFEHIQQLVDVGGCLGNTLKAIT---SK-YPHIKGINFDLPHV 208 (231)
Q Consensus 136 ~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vvDVGGG~G~~~~~l~---~~-~P~l~~~v~Dlp~v 208 (231)
||.+++|+-.-..|.+|+.. .+.+..+ .-.+...|+|||+|+|-+....+ ++ .-++++..++-.+.
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 44455666555566666532 2222221 02345789999999998843333 33 23346788887665
Q ss_pred HhhCCC-------CCCceEeecCCCCC-CC
Q 047000 209 IQHAPK-------YPGVEHVGGDMFQN-VP 230 (231)
Q Consensus 209 i~~a~~-------~~ri~~~~gDff~~-~P 230 (231)
+..+++ .++|+++.||+-+= +|
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LP 426 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAP 426 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCS
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCC
Confidence 555543 28999999999873 44
No 337
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.78 E-value=0.095 Score=38.45 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=41.8
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
++.|+..|...+ ++++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.++.+
T Consensus 43 q~~vL~~l~~~~-~~~~t~~eLa~~l~-~----~~~~vs~~l~~L~~~Glv~r~~~~~---DrR~~~~~LT~~G~~~ 110 (148)
T 3jw4_A 43 QGRMIGYIYENQ-ESGIIQKDLAQFFG-R----RGASITSMLQGLEKKGYIERRIPEN---NARQKNIYVLPKGAAL 110 (148)
T ss_dssp HHHHHHHHHHHT-TTCCCHHHHHHC-----------CHHHHHHHHHHTTSBCCC-----------CCCCBCHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHC-C----ChhHHHHHHHHHHHCCCEEeeCCCC---CchhheeeECHHHHHH
Confidence 445777777642 14899999999999 9 9999999999999999999853211 22 36677776643
No 338
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=94.77 E-value=0.023 Score=50.92 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=43.7
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeech-HHHhhCCC------CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDLP-HVIQHAPK------YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gDff~ 227 (231)
...+|||+|||+|..+..+++..+ .-+++.+|+. ..++.+++ .++|+++.+|..+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~ 179 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 578999999999999999999975 4789999984 45555543 2578888888754
No 339
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.74 E-value=0.071 Score=40.26 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=50.0
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~-i----s~~tvs~~l~~Le~~GlV~r~~~~~---DrR~~~~~LT~~G~~~ 112 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLG-V----QPSATGRMVDRLVGAELIDRLPHPT---SRRELLAALTKRGRDV 112 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEECSS---CSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEeccCCC---CCCeeEEEECHHHHHH
Confidence 455678888775 5899999999999 9 9999999999999999999853211 22 26677777643
No 340
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.72 E-value=0.029 Score=41.05 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=42.4
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
++.|..+||+.++ + +...+.+.++.|...|++++. .+.|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~-i----s~~tv~~~l~~Le~~Gli~r~-------~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLK-I----APSSVFEEVSHLEEKGLVKKK-------EDGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhC-C----ChHHHHHHHHHHHHCCCEEec-------CCeEEEChhHHHH
Confidence 6899999999999 9 999999999999999999983 4568888887643
No 341
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=94.71 E-value=0.026 Score=42.38 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=35.7
Q ss_pred CCceEEEccCChh-HHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEeecCCCCCC
Q 047000 173 HIQQLVDVGGCLG-NTLKAITSKYPHIKGINFDL-PHVIQHAPKYPGVEHVGGDMFQNV 229 (231)
Q Consensus 173 ~~~~vvDVGGG~G-~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gDff~~~ 229 (231)
...++|+||||.| ..+..|+++ -+..++..|+ |..++ ++-.|+|++.
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~ 83 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPR 83 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCC
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCc
Confidence 4579999999999 588888764 4788899997 33333 7778888764
No 342
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.71 E-value=0.021 Score=41.87 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=52.2
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-CcccccchhhccccCC
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYFVPN 107 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L~~~ 107 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... +. .-.+.+|+.+..+...
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~-~----~~~tvs~~l~~L~~~glv~r~~~~~-d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLY-L----DSGTLTPMLKRMEQQGLITRKRSEE-DERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTT-C----CHHHHHHHHHHHHHHTSEECCBCSS-CTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-C----CcCcHHHHHHHHHHCCCEEeccCCC-CCCeeEEEECHhHHHHHHH
Confidence 456677888765 5899999999999 9 9999999999999999999853211 00 1137788888755443
No 343
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.70 E-value=0.03 Score=40.86 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=46.4
Q ss_pred hhChHHHH-HhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhc
Q 047000 31 GLGVFEII-AKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSN 102 (231)
Q Consensus 31 ~lglfd~L-~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~ 102 (231)
++.|+..| ... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+.
T Consensus 39 ~~~iL~~l~~~~---~~~t~~~la~~l~-~----s~~~vs~~l~~L~~~glv~r~~~~~---d~R~~~~~lT~~G~ 103 (146)
T 2fbh_A 39 RWLVLLHLARHR---DSPTQRELAQSVG-V----EGPTLARLLDGLESQGLVRRLAVAE---DRRAKHIVLTPKAD 103 (146)
T ss_dssp HHHHHHHHHHCS---SCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEECCBT---TBCSCEEEECTTHH
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHhC-C----ChhhHHHHHHHHHHCCCeeecCCCc---ccCeeeeEECHhHH
Confidence 44577777 443 6899999999999 9 9999999999999999999853111 22 255666655
No 344
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.69 E-value=0.027 Score=41.15 Aligned_cols=63 Identities=8% Similarity=0.049 Sum_probs=48.9
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++.+..... ++ .+.+|+.+..+
T Consensus 31 ~~~iL~~l~~~---~~~t~~~la~~l~-~----s~~~vs~~l~~Le~~gli~r~~~~~---d~R~~~~~lT~~G~~~ 96 (144)
T 1lj9_A 31 QYLYLVRVCEN---PGIIQEKIAELIK-V----DRTTAARAIKRLEEQGFIYRQEDAS---NKKIKRIYATEKGKNV 96 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECSS---CTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHC---cCcCHHHHHHHHC-C----CHhHHHHHHHHHHHCCCEEeecCCC---CCceeeeEEChhHHHH
Confidence 44577778775 5899999999999 9 9999999999999999999853211 22 26677777643
No 345
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.68 E-value=0.039 Score=40.93 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=50.7
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
..++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~-i----s~~tvs~~l~~Le~~Gli~r~~~~~---d~R~~~~~lT~~G~~~ 111 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLS-T----TKSNVTNVVDSLEKRGLVVREMDPV---DRRTYRVVLTEKGKEI 111 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTT-S----CHHHHHHHHHHHHHTTSEEEEECTT---TSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeeCCCC---CcceeEEEECHHHHHH
Confidence 4466788888775 5899999999999 9 9999999999999999999853111 22 36677777643
No 346
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.67 E-value=0.026 Score=41.77 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=50.1
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc--cccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC--SIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~--~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++ ..... ++ .+.+|+.+..+
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~~~---d~R~~~~~LT~~G~~~ 110 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLI-I----TGSSAAANVDGLISLGLVVKLNKTIPN---DSMDLTLKLSKKGEDL 110 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEESCC--CT---TCTTCEEEECHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEecCcCCCC---CCceeEeEECHHHHHH
Confidence 355677788775 5899999999999 9 99999999999999999998 43211 22 47788877643
Q ss_pred c
Q 047000 105 V 105 (231)
Q Consensus 105 ~ 105 (231)
.
T Consensus 111 ~ 111 (154)
T 2qww_A 111 S 111 (154)
T ss_dssp H
T ss_pred H
Confidence 3
No 347
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.65 E-value=0.022 Score=41.42 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=49.7
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~-~----s~~~vs~~l~~Le~~glv~r~~~~~---d~R~~~~~lT~~G~~~ 103 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQAC-I----LRPSMTGVLARLERDGIVRRWKAPK---DQRRVYVNLTEKGQQC 103 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-C----CHhHHHHHHHHHHHCCCEEeecCCC---CCCeeEEEECHHHHHH
Confidence 456688888775 5899999999999 9 9999999999999999999853211 22 26677776643
No 348
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=94.64 E-value=0.015 Score=51.86 Aligned_cols=55 Identities=4% Similarity=-0.047 Sum_probs=42.6
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCC-CeEEEeech-HHHhhCCCC------CCceEeecCC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPH-IKGINFDLP-HVIQHAPKY------PGVEHVGGDM 225 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~~------~ri~~~~gDf 225 (231)
.....+|||+|||+|..+..+++..++ -+++.+|+- ..++.++++ .+|+++.+|.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da 165 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAP 165 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCH
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH
Confidence 456789999999999999999998765 689999984 455555432 5688887775
No 349
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.57 E-value=0.027 Score=41.37 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=46.4
Q ss_pred hHHHHHhcCCCCCCCHHHHHHhC-CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 34 VFEIIAKAGPGAKLSASEIAAQL-PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 34 lfd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
|...|.. ++++..||++.+ + + ++..|.+.|+.|...|++++.....+.-.-.|.+|+.++.+
T Consensus 40 IL~~L~~----g~~~~~eLa~~l~g-i----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l 102 (131)
T 1yyv_A 40 ILVALRD----GTHRFSDLRRXMGG-V----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQV 102 (131)
T ss_dssp HHHHGGG----CCEEHHHHHHHSTT-C----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHhcc-C----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHH
Confidence 4445553 589999999999 9 9 99999999999999999998532110001258999988643
No 350
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.54 E-value=0.042 Score=41.59 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYF 104 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L 104 (231)
..++.|+..|...+ +++|..+||+.++ + +...+.++++.|...|++++..... +. .-.+.+|+.++.+
T Consensus 53 ~~q~~vL~~L~~~~--~~~t~~eLa~~l~-i----~~~tvs~~l~~Le~~GlV~r~~~~~-DrR~~~l~LT~~G~~~ 121 (166)
T 3deu_A 53 QTHWVTLHNIHQLP--PDQSQIQLAKAIG-I----EQPSLVRTLDQLEDKGLISRQTCAS-DRRAKRIKLTEKAEPL 121 (166)
T ss_dssp HHHHHHHHHHHHSC--SSEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEC---------CEEEECGGGHHH
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHC-C----CHhhHHHHHHHHHHCCCEEeeCCCC-CCCeeEEEECHHHHHH
Confidence 34566778887633 5899999999999 9 9999999999999999999853211 00 1236677766643
No 351
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.54 E-value=0.034 Score=36.74 Aligned_cols=56 Identities=11% Similarity=0.251 Sum_probs=47.5
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLN 98 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t 98 (231)
.+-.|++.|.+.| +|++..|||+++| + +..-+.+.|..|-..|.+..+. ...|.++
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~G-v----dKKeVdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQ-A----PKRELNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHcCCccCCC------CceeeCC
Confidence 3556889999987 8999999999999 9 9999999999999999988741 3466654
No 352
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.49 E-value=0.029 Score=40.98 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
..++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .|.+|+.+..+
T Consensus 33 ~~~~~iL~~l~~~---~~~~~~~la~~l~-~----s~~tvs~~l~~L~~~glv~r~~~~~---d~r~~~~~lT~~G~~~ 100 (145)
T 2a61_A 33 PAQFDILQKIYFE---GPKRPGELSVLLG-V----AKSTVTGLVKRLEADGYLTRTPDPA---DRRAYFLVITRKGEEV 100 (145)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHC-C----CchhHHHHHHHHHHCCCeeecCCCC---CCceEEEEECHHHHHH
Confidence 3456678888775 5899999999999 9 9999999999999999999853111 22 36777777643
No 353
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.45 E-value=0.027 Score=42.08 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=48.2
Q ss_pred hChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcccc
Q 047000 32 LGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYFV 105 (231)
Q Consensus 32 lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L~ 105 (231)
+.|+..|... +++|..+||+.++ + ++..+.+++..|...|++++..... ++ .+.+|+.+..+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLK-I----DKGTTARAIQKLVDEGYVFRQRDEK---DRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECC------CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEecCCC---CCCeeEEEECHHHHHHH
Confidence 4467777765 5899999999999 9 9999999999999999999864211 22 366777776433
No 354
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.40 E-value=0.085 Score=38.48 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=49.5
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|... ++ |..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 38 ~~~~iL~~l~~~---~~-~~~~la~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~---D~R~~~~~LT~~G~~~ 103 (144)
T 3f3x_A 38 LDFSILKATSEE---PR-SMVYLANRYF-V----TQSAITAAVDKLEAKGLVRRIRDSK---DRRIVIVEITPKGRQV 103 (144)
T ss_dssp HHHHHHHHHHHS---CE-EHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHC---CC-CHHHHHHHHC-C----ChhHHHHHHHHHHHCCCEEeccCCC---CCceEEEEECHHHHHH
Confidence 456688888875 35 9999999999 9 9999999999999999999863211 22 37788877643
No 355
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.40 E-value=0.036 Score=40.87 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=48.9
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNY 103 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~ 103 (231)
.++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... ++ .+.+|+.+..
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~-~----~~~~vs~~l~~Le~~Glv~r~~~~~---d~R~~~~~lT~~G~~ 106 (152)
T 3bj6_A 41 GQRAILEGLSLT---PGATAPQLGAALQ-M----KRQYISRILQEVQRAGLIERRTNPE---HARSHRYWLTPRGEA 106 (152)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEECCSS---STTSCEEEECHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCeeecCCcc---cccceeeEEChhhHH
Confidence 355678888775 5899999999999 9 9999999999999999999853111 12 3667776653
No 356
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.39 E-value=0.037 Score=40.48 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=46.5
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhcc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNY 103 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~ 103 (231)
..++.|...|... + +|..+||+.++ + ++..+.++++.|...|++++..... +. .-.+.+|+.+..
T Consensus 38 ~~~~~iL~~l~~~---~-~t~~eLa~~l~-~----s~~tvs~~l~~L~~~Glv~r~~~~~-d~R~~~~~lT~~g~~ 103 (146)
T 3tgn_A 38 NTQEHILMLLSEE---S-LTNSELARRLN-V----SQAAVTKAIKSLVKEGMLETSKDSK-DARVIFYQLTDLARP 103 (146)
T ss_dssp HHHHHHHHHHTTC---C-CCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEC-----------CCEECGGGHH
T ss_pred HHHHHHHHHHHhC---C-CCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCeEeccCCC-CCceeEEEECHhHHH
Confidence 3456677788763 4 99999999999 9 9999999999999999999853111 00 124667766653
No 357
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.38 E-value=0.032 Score=40.53 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=50.1
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYFV 105 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L~ 105 (231)
.++.|+..|...+ ++++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+.
T Consensus 32 ~~~~vL~~l~~~~-~~~~t~~ela~~l~-~----~~~tvs~~l~~Le~~Gli~r~~~~~---D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQ-QDGLTQNDIAKALQ-R----TGPTVSNLLRNLERKKLIYRYVDAQ---DTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHST-TTCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECCC-----CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHhC-C----CcccHHHHHHHHHHCCCEeecCCCC---CCCeeeeEECHHHHHHH
Confidence 4556778887752 14899999999999 9 9999999999999999999863211 22 356777776433
No 358
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.36 E-value=0.043 Score=40.96 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=47.8
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L 104 (231)
++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... +. .-.|.+|+.+..+
T Consensus 51 ~~~iL~~l~~~---~~~t~~ela~~l~-i----s~~tvs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~ 116 (162)
T 2fa5_A 51 EWRVITILALY---PGSSASEVSDRTA-M----DKVAVSRAVARLLERGFIRRETHGD-DRRRSMLALSPAGRQV 116 (162)
T ss_dssp HHHHHHHHHHS---TTCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEC----------CCCEECHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeeecCCC-CCCeeEEEECHHHHHH
Confidence 45578888775 5899999999999 9 9999999999999999999853110 00 1236677777643
No 359
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.35 E-value=0.029 Score=37.37 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=41.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCCcchHHHHHHHHHhCCcccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
-+..|++.|...+ +++.|++||++.+ + + +...++|.|+.|...|++.+..
T Consensus 18 ~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~-i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEE-I----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCC-C----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCC-C----CHhhHHHHHHHHHHCCCeEEEe
Confidence 3456888887631 0389999999999 8 8 9999999999999999999853
No 360
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.32 E-value=0.037 Score=40.00 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=47.9
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNY 103 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~ 103 (231)
++.|...|.... ++++|..+||+.++ + ++..+.+++..|...|++++..... ++ .+.+|+.+..
T Consensus 39 q~~vL~~l~~~~-~~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~---D~R~~~i~LT~~G~~ 105 (127)
T 2frh_A 39 EFAVLTYISENK-EKEYYLKDIINHLN-Y----KQPQVVKAVKILSQEDYFDKKRNEH---DERTVLILVNAQQRK 105 (127)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSS-S----HHHHHHHHHHHHHHTTSSCCBCCSS---SSCCCEEECCSHHHH
T ss_pred HHHHHHHHHhcc-CCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEecCCCC---CCCeeEEEECHHHHH
Confidence 445777776641 14899999999999 9 9999999999999999999853211 22 2567776653
No 361
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.32 E-value=0.05 Score=39.46 Aligned_cols=65 Identities=5% Similarity=0.145 Sum_probs=48.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNY 103 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~ 103 (231)
.++.|+..|...+ ++++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~~ela~~l~-~----~~~tvs~~l~~Le~~Gli~r~~~~~---d~R~~~i~lT~~G~~ 102 (141)
T 3bro_A 35 TQMTIIDYLSRNK-NKEVLQRDLESEFS-I----KSSTATVLLQRMEIKKLLYRKVSGK---DSRQKCLKLTKKANK 102 (141)
T ss_dssp HHHHHHHHHHHTT-TSCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECSS---CTTSEEEEECHHHHT
T ss_pred HHHHHHHHHHHCC-CCCcCHHHHHHHHC-C----CcchHHHHHHHHHHCCCEEeeCCCc---CCCeeeeEECHHHHH
Confidence 3455777787752 12899999999999 9 9999999999999999999853211 22 3567776653
No 362
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.29 E-value=0.022 Score=42.11 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=48.0
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNY 103 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~ 103 (231)
..++.|...|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..
T Consensus 41 ~~q~~iL~~l~~~---~~~~~~eLa~~l~-~----~~~~vs~~l~~L~~~Glv~r~~~~~---D~R~~~~~LT~~G~~ 107 (149)
T 4hbl_A 41 YSQYLVMLTLWEE---NPQTLNSIGRHLD-L----SSNTLTPMLKRLEQSGWVKRERQQS---DKRQLIITLTDNGQQ 107 (149)
T ss_dssp HHHHHHHHHHHHS---SSEEHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEC------------CEEEECSHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeeCCCCC---CcceeeeeECHHHHH
Confidence 3455677888775 5899999999999 9 9999999999999999999853211 22 3667777664
No 363
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.28 E-value=0.034 Score=41.60 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=49.1
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhcc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNY 103 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~ 103 (231)
.++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... +. .-.|.+|+.+..
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~-i----s~~tvs~~l~~Le~~Gli~r~~~~~-d~R~~~~~lT~~G~~ 118 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAV-V----EQSTLSRALDGLQADGLVRREVDSD-DQRSSRVYLTPAGRA 118 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEC---CCSSEEEEECHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-C----ChhHHHHHHHHHHHCCCEEecCCCC-CCCeeEEEECHHHHH
Confidence 455678888775 5899999999999 9 9999999999999999999853111 00 123667777663
No 364
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=94.18 E-value=0.042 Score=47.70 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=34.4
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeec-hHHHhhCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDL-PHVIQHAP 213 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 213 (231)
..+|||+|||+|.+++.++++.|..+++..|+ |..++.++
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~ 88 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK 88 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 57899999999999999999999889999998 45555544
No 365
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.17 E-value=0.069 Score=39.84 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=48.7
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYFV 105 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L~ 105 (231)
++.+.-.|...+ .+.+..+||+.++ + ++..+.+++..|...|++++..... ++ ...+|+.+..+.
T Consensus 33 q~~vL~~L~~~~--~~~~~~eLa~~l~-~----~~~tvs~~v~~Le~~GlV~R~~~~~---DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLP--PEQSQIQLAKAIG-I----EQPSLVRTLDQLEEKGLITRHTSAN---DRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSC--TTSCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEECSS---CTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcC--CCCcHHHHHHHHC-c----CHHHHHHHHHHHHhCCCeEeecCCC---CCcchhhhcCHHHHHHH
Confidence 445666776644 4688899999999 9 9999999999999999999864221 33 366777776433
No 366
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.15 E-value=0.033 Score=41.25 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=50.8
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-CcccccchhhccccC
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYFVP 106 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L~~ 106 (231)
.++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... +. .-.+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~-~----s~~tvs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLY-L----DSATLTPLLKRLQAAGLVTRTRAAS-DERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEC--------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhC-C----CcccHHHHHHHHHHCCCEeecCCcc-cCCeeEeeECHHHHHHHH
Confidence 355677788775 5899999999999 9 9999999999999999999853111 00 114778888875443
No 367
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=94.10 E-value=0.015 Score=50.84 Aligned_cols=55 Identities=13% Similarity=-0.011 Sum_probs=44.3
Q ss_pred CCceEEEccCChhHHHHHHHHHCCC-CeEEEeec-hHHHhhCCCC-------CC-ceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPH-IKGINFDL-PHVIQHAPKY-------PG-VEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~~-------~r-i~~~~gDff~ 227 (231)
+..+|||+++|+|.+++.++++.++ -+++..|. |..++.++++ ++ ++++.+|.++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~ 116 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANF 116 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHH
Confidence 4679999999999999999998776 46899998 6677666542 45 8999998653
No 368
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.06 E-value=0.035 Score=41.38 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=47.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|...+ +++|..+||+.++ + ++..+.+++..|...|++++..... ++ .+.+|+.+..+
T Consensus 48 ~~~~iL~~L~~~~--~~~~~~ela~~l~-i----~~~tvs~~l~~Le~~Gli~r~~~~~---d~R~~~~~lT~~G~~~ 115 (160)
T 3boq_A 48 AKFDAMAQLARNP--DGLSMGKLSGALK-V----TNGNVSGLVNRLIKDGMVVKAMSAD---DRRSFSAKLTDAGLTT 115 (160)
T ss_dssp HHHHHHHHHHHCT--TCEEHHHHHHHCS-S----CCSCHHHHHHHHHHHTSEEEC-----------CEEEECHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEEeecCCC---CCCeEEEEEChhHHHH
Confidence 3456788884322 6899999999999 9 9999999999999999999853111 22 26677777643
No 369
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=94.05 E-value=0.089 Score=45.23 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=41.2
Q ss_pred CceEEEccCChhHHHHHHHHHCCCCeEEEeechH----HHhhCCCCCCceEeecCCCC
Q 047000 174 IQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPH----VIQHAPKYPGVEHVGGDMFQ 227 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~----vi~~a~~~~ri~~~~gDff~ 227 (231)
...||+||.|.|.+...|+++...-+.++++... .++.....++++.+.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 5789999999999999999975445688888642 22221135899999999974
No 370
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=94.02 E-value=0.087 Score=39.17 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=42.8
Q ss_pred CHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccccCCCCCCchhhHHHHHh
Q 047000 48 SASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFVPNKDGSYRSQLKEAIT 121 (231)
Q Consensus 48 t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~L~~~l~ 121 (231)
|.++||+.++ + ++..|+++|..|...|+++... + .|.|.+. ++.......++.+++.
T Consensus 25 s~~~IA~~~~-i----~~~~l~kIl~~L~~aGlv~s~r--G---~GGy~La-------r~p~~Itl~dVi~ave 81 (145)
T 1xd7_A 25 SSEIIADSVN-T----NPVVVRRMISLLKKADILTSRA--G---VPGASLK-------KDPADISLLEVYRAVQ 81 (145)
T ss_dssp CHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEECCS--S---SSSCEES-------SCGGGCBHHHHHHHHC
T ss_pred CHHHHHHHHC-c----CHHHHHHHHHHHHHCCceEeec--C---CCCceec-------CCHHHCCHHHHHHHHc
Confidence 9999999999 9 9999999999999999998752 2 3556554 3333334556666664
No 371
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=93.96 E-value=0.043 Score=46.80 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=47.3
Q ss_pred CCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhhCCC---------------------------CCCceEeecCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQHAPK---------------------------YPGVEHVGGDM 225 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~---------------------------~~ri~~~~gDf 225 (231)
+...||.+|||..+....+...+|+++++=+|+|+|++.=+. .++..+++.|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 568999999999999999999999999999999998864211 16899999999
Q ss_pred CC
Q 047000 226 FQ 227 (231)
Q Consensus 226 f~ 227 (231)
.+
T Consensus 177 ~d 178 (334)
T 1rjd_A 177 ND 178 (334)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 372
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.93 E-value=0.041 Score=40.12 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=49.7
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|... +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~-~----~~~tvs~~l~~L~~~gli~r~~~~~---d~R~~~~~lT~~G~~~ 104 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELA-L----DTGTVSPLLKRMEQVDLIKRERSEV---DQREVFIHLTDKSETI 104 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTT-C----CTTTHHHHHHHHHHTTSEEEEECSS---STTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEEeecCCC---CcceEEEEEChHHHHH
Confidence 455677888775 5899999999999 9 9999999999999999999853211 12 36677777643
No 373
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=93.85 E-value=0.072 Score=44.54 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=38.8
Q ss_pred CCCCceEEEccC------ChhHHHHHHHHHCC-CCeEEEeechHHHhhCCCCCCceE-eecCCCCC
Q 047000 171 FEHIQQLVDVGG------CLGNTLKAITSKYP-HIKGINFDLPHVIQHAPKYPGVEH-VGGDMFQN 228 (231)
Q Consensus 171 ~~~~~~vvDVGG------G~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~a~~~~ri~~-~~gDff~~ 228 (231)
.....+|||+|| |.|. ..+++..| +.+++.+|+-+. .+++++ +.+|+.+.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~ 118 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATV 118 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccC
Confidence 566789999999 5688 44567777 689999998654 257899 99998763
No 374
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.80 E-value=0.056 Score=40.31 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 35 FEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 35 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
...|... ++.|..+||+.++ + +...+.+.++.|...|+++... +..+.+|+.+..+
T Consensus 46 ~~~l~~~---~~~~~~~la~~l~-v----s~~tvs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~ 101 (155)
T 2h09_A 46 SDLIREV---GEARQVDMAARLG-V----SQPTVAKMLKRLATMGLIEMIP------WRGVFLTAEGEKL 101 (155)
T ss_dssp HHHHHHH---SCCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTCEEEET------TTEEEECHHHHHH
T ss_pred HHHHHhC---CCcCHHHHHHHhC-c----CHHHHHHHHHHHHHCCCEEEec------CCceEEChhHHHH
Confidence 3356554 5799999999999 9 9999999999999999998741 4567788877643
No 375
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.77 E-value=0.24 Score=36.38 Aligned_cols=62 Identities=11% Similarity=0.224 Sum_probs=46.1
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccc--cCCCCcCc---ccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSI--DDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~--~~~~~~~~---~y~~t~~s~~L 104 (231)
++.|+..| .. +++|..+||+.++ + ++..+.++++.|...|++++.. ... ++ .+.+|+.+..+
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~-~----~~~~vs~~l~~Le~~Glv~r~~~~~~~---D~R~~~~~lT~~G~~~ 106 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQG-V----NKAAVSRRVKKLLNAELVKLEKPDSNT---DQRLKIIKLSNKGKKY 106 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHC-S----CSSHHHHHHHHHHHTTSEEC--------------CCBEECHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeeCCCCCC---CCCeeEEEECHhHHHH
Confidence 44588888 54 6999999999999 9 9999999999999999999721 111 22 35677766643
No 376
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=93.74 E-value=0.12 Score=35.24 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=44.8
Q ss_pred hHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcch-HHHHHHHHHhCCcccccccCCCCcCcccccchhhcc
Q 047000 34 VFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMM-LDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNY 103 (231)
Q Consensus 34 lfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~-l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~ 103 (231)
++..|...+ .++|..+||+.++ + ++.. +.++++.|...|+++..+.+. -.-.+.+|+.+..
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~-i----s~~t~vs~~l~~Le~~Glv~~~~~dr--R~~~~~LT~~G~~ 81 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASG-V----SEKTFFMGLKDRLIRAGLVKEETLSY--RVKTLKLTEKGRR 81 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHC-C----CHHHHHTTHHHHHHHTTSEEEEEEET--TEEEEEECHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHC-C----CchHHHHHHHHHHHHCCCeecCCCCC--CeEEEEECHhHHH
Confidence 455566542 3799999999999 9 9999 999999999999999432110 0123678887763
No 377
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.73 E-value=0.13 Score=33.92 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=37.5
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLN 98 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t 98 (231)
+..|+.+||+++| + +...+.|+|..|...|.|...... +-.|..+
T Consensus 28 ~~~Ta~~IAkkLg-~----sK~~vNr~LY~L~kkG~V~~~~~~----PP~W~~~ 72 (75)
T 1sfu_A 28 DYTTAISLSNRLK-I----NKKKINQQLYKLQKEDTVKMVPSN----PPKWFKN 72 (75)
T ss_dssp CEECHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEECCS----SCEEEEC
T ss_pred cchHHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEecCCCC----CCCccCC
Confidence 5699999999999 9 999999999999999999986321 4556554
No 378
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.63 E-value=0.058 Score=37.86 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=39.9
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++.|+..+...| .++|..+||+.+| + +...+++.|..|...|+++..
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lg-v----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLN-I----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTT-S----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 455677775443 4899999999999 9 999999999999999999874
No 379
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.59 E-value=0.039 Score=38.20 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=46.9
Q ss_pred HHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhh
Q 047000 25 AMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVS 101 (231)
Q Consensus 25 ~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s 101 (231)
+|.--.++.|+..|... ++.++.|||+.+| + ++..+.+-|+.|... ++.... ++. .-.|++++..
T Consensus 23 aL~~~~Rl~IL~~l~~~---~~~~~~ela~~l~-i----s~stvs~hL~~L~~~-lv~~~~-~gr--~~~y~l~~~~ 87 (99)
T 2zkz_A 23 TMAHPMRLKIVNELYKH---KALNVTQIIQILK-L----PQSTVSQHLCKMRGK-VLKRNR-QGL--EIYYSINNPK 87 (99)
T ss_dssp HHCSHHHHHHHHHHHHH---SCEEHHHHHHHHT-C----CHHHHHHHHHHHBTT-TBEEEE-ETT--EEEEECCCHH
T ss_pred HhCCHHHHHHHHHHHHC---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHH-hhhheE-eCc--EEEEEEChHH
Confidence 33344667788655544 5899999999999 9 999999999999999 888642 110 1246666543
No 380
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=93.52 E-value=0.077 Score=39.45 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=41.5
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.+..|...|..+ +++|..+||+++| + ++..+.+.++.|...|++.+.
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAG-L----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 356688888875 5899999999999 9 999999999999999999763
No 381
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.52 E-value=0.069 Score=39.65 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=41.4
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
.++.|...|..+ +++|..+||+.+| + ++..+.+.++.|...|++..
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIR-I----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEE
Confidence 456788888875 5899999999999 9 99999999999999999986
No 382
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=93.52 E-value=0.079 Score=39.17 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=41.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.+..|.+.|..+ +++|..+||+++| + ++..+.+.++.|...|++.+.
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIK-L----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEE
Confidence 355688888875 5899999999999 9 999999999999999999863
No 383
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=93.43 E-value=0.038 Score=51.69 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=36.2
Q ss_pred CCceEEEccCChhHHHHHHHHH----C---------CCCeEEEeechH-HHhhCC-----C-CCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSK----Y---------PHIKGINFDLPH-VIQHAP-----K-YPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~----~---------P~l~~~v~Dlp~-vi~~a~-----~-~~ri~~~~gDff~ 227 (231)
+...|+|||||+|-+....+++ . ...+++.+|-.+ ++...+ . .++|+++.||+-+
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~ee 483 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRS 483 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGG
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhh
Confidence 4678999999999996533222 2 234788888753 222111 1 2789999999854
No 384
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=93.30 E-value=0.066 Score=38.09 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.-.++.|+..|.. ++.|..+||+.++ + +...+.+.|+.|...|++...
T Consensus 31 ~~~~~~il~~L~~----~~~s~~ela~~l~-i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 31 TPSRLMILTQLRN----GPLPVTDLAEAIG-M----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CHHHHHHHHHHHH----CCCCHHHHHHHHS-S----CHHHHHHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHH----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 3457778888887 4899999999999 9 999999999999999999874
No 385
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.16 E-value=0.086 Score=40.77 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=52.3
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc-Ccccccchhhcccc
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS-QRLYGLNDVSNYFV 105 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~-~~~y~~t~~s~~L~ 105 (231)
...++.|...|.... ++++|..+||+.++ + ++..+.++++.|...|++++..... +. .-.+.+|+.+..+.
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~-i----s~~tvs~~l~~Le~~GlV~r~~~~~-DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMG-T----SKQNINRLVANLEKNGYVDVIPSPH-DKRAINVKVTDLGKKVM 111 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEECSS-CSSCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEeccCCC-CCCeeEEEECHHHHHHH
Confidence 445667788887521 15899999999999 9 9999999999999999999864211 00 12367888876444
No 386
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.11 E-value=0.1 Score=36.10 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=48.5
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHH-hCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAA-QLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~-~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
++.|+-.|..+ ++.|+.+||+ ..+ + +...+.|-++.|...|+++. .+ ++ +.+|+.++-+
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~-~----drstvsrnl~~L~r~GlVe~---~~---~D-l~LT~~G~~~ 77 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPD-L----GNAVVNSNIGVLIKKGLVEK---SG---DG-LIITGEAQDI 77 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTT-S----CHHHHHHHHHHHHTTTSEEE---ET---TE-EEECHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhc-c----cHHHHHHHHHHHHHCCCeec---CC---CC-eeeCHhHHHH
Confidence 45567778776 5999999999 999 9 99999999999999999994 22 34 8888888643
No 387
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=93.07 E-value=0.098 Score=39.44 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=41.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.+..|.+.|..+ +++|..|||+++| + ++..+.+.++.|...|++...
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVA-L----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEeee
Confidence 355688888875 5899999999999 9 999999999999999999863
No 388
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.05 E-value=0.049 Score=41.70 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=48.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|+..|...++.+++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~-i----s~~tvs~~l~~Le~~GlV~r~~~~~---DrR~~~~~LT~~G~~~ 139 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAA-I----SGPSTSNRIVRLLEKGLIERREDER---DRRSASIRLTPQGRAL 139 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCS-C----CSGGGSSHHHHHHHHTSEECCC----------CCBEECHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHC-C----CHHHHHHHHHHHHHCcCEEecCCCC---CCCeeEEEECHHHHHH
Confidence 3556788887754111399999999999 9 9999999999999999999853111 12 36677777643
No 389
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.87 E-value=0.066 Score=40.34 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=47.4
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYFV 105 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L~ 105 (231)
.++.|...|...|+ +++|..+||+.++ + ++..+.++++.|...|++++..... ++ .+.+|+.+..+.
T Consensus 47 ~q~~vL~~l~~~~~-~~~t~~eLa~~l~-~----~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHP-EGMATLQIADRLI-S----RAPDITRLIDRLDDRGLVLRTRKPE---NRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHC--------CTHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEeecCCCC---CCCeeEeEECHHHHHHH
Confidence 45557777776421 5899999999999 9 9999999999999999999853211 22 366777776433
No 390
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=92.84 E-value=0.11 Score=38.67 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=41.4
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
.+..|...|..+ +++|..+||+++| + ++..+.+.++.|...|++..
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILN-T----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTT-S----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEE
Confidence 456788888875 5899999999999 9 99999999999999999985
No 391
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=92.84 E-value=0.092 Score=43.55 Aligned_cols=43 Identities=21% Similarity=0.052 Sum_probs=33.5
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL 205 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 205 (231)
..+.+.+- +....+|||+|||.|.++.-+++..|-.+++.+|+
T Consensus 80 ~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv 122 (282)
T 3gcz_A 80 RWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL 122 (282)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence 35556664 77778999999999999999988877666666665
No 392
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.83 E-value=0.094 Score=39.04 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=41.2
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
.+..|.+.|..+ +++|..+||+.+| + ++..+.+.++.|...|++..
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITG-L----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHC-S----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEE
Confidence 355688888875 5899999999999 9 99999999999999999986
No 393
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=92.75 E-value=0.11 Score=37.79 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCCcchHHHHHHHHHhCCcccccc
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
+--+.-|++.|...+ ++.|++||.+.+ + + +..-+.|.|+.|+..|++.+..
T Consensus 10 T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~-i----s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 10 TRQRAAISTLLETLD--DFRSAQELHDELRRRGEN-I----GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCC-C----CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCC-C----CHhhHHHHHHHHHHCCCEEEEE
Confidence 456777899998654 699999999998 6 6 8899999999999999999863
No 394
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=92.73 E-value=0.081 Score=36.41 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+++|..|||+.+| + +...+.+.|+.|...|++++.
T Consensus 35 ~~~t~~ela~~l~-i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFK-L----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEee
Confidence 5899999999999 9 999999999999999999985
No 395
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=92.49 E-value=0.13 Score=39.36 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=41.4
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
.+..|.+.|..+ +++|..+||+++| + ++..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lg-l----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLK-K----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEe
Confidence 455788889875 5899999999999 9 99999999999999999985
No 396
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=92.48 E-value=0.14 Score=39.24 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=41.8
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
.+..|.+.|..+ +.+|..|||+++| + ++..+.+-++.|...|++..
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lg-l----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITG-L----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEe
Confidence 466788999876 5899999999999 9 99999999999999999986
No 397
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=92.47 E-value=0.11 Score=37.91 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=40.0
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
+..|...|..+ +++|..+||+.+| + ++..+.+.++.|...|++..
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLG-I----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHT-S----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEec
Confidence 45677888765 5899999999999 9 99999999999999999986
No 398
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=92.43 E-value=0.11 Score=38.70 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=41.2
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
.+..|...|.++ +++|..+||+++| + ++..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg-~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFG-V----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHT-S----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHcCCcce
Confidence 355688888875 5899999999999 9 99999999999999999986
No 399
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=92.40 E-value=0.063 Score=36.73 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=39.7
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
++|..+||+.++ + ++..+.+++..|...|++... . ++ .|.+|+.+..+
T Consensus 30 ~~t~~eLa~~l~-i----~~~tvs~~l~~Le~~Glv~~~--~----d~R~~~v~LT~~G~~~ 80 (95)
T 2qvo_A 30 DVYIQYIASKVN-S----PHSYVWLIIKKFEEAKMVECE--L----EGRTKIIRLTDKGQKI 80 (95)
T ss_dssp CEEHHHHHHHSS-S----CHHHHHHHHHHHHHTTSEEEE--E----ETTEEEEEECHHHHHH
T ss_pred CcCHHHHHHHHC-c----CHHHHHHHHHHHHHCcCccCC--C----CCCeEEEEEChhHHHH
Confidence 499999999999 9 999999999999999999432 1 33 48888887643
No 400
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=92.24 E-value=0.074 Score=37.08 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=40.4
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++.|...|-+. +++|..||++.++ ...+.++..+.++|+-|...|++++.
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~-~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIP-QELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCC-GGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHh-cccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 55688888765 5899999999998 51112467999999999999999985
No 401
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=92.22 E-value=0.13 Score=38.80 Aligned_cols=46 Identities=9% Similarity=0.218 Sum_probs=41.6
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
.+..|.+.|.++ +++|..+||+++| + ++..+.+-++.|...|++..
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg-~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVG-L----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeee
Confidence 456788889876 6999999999999 9 99999999999999999985
No 402
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.08 E-value=0.051 Score=40.29 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=45.8
Q ss_pred ChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 33 GVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 33 glfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.+.-.|... +++++|..+||+.++ + ++..+.++++.|...|++++..... ++ ...+|+.++.+
T Consensus 39 ~vL~~L~~~-~~~~~t~~eLa~~l~-~----~~~tvs~~v~~Le~~Glv~r~~~~~---DrR~~~l~LT~~G~~~ 104 (147)
T 4b8x_A 39 EALVLLTFS-KSGELPMSKIGERLM-V----HPTSVTNTVDRLVRSGLVAKRPNPN---DGRGTLATITDKGREV 104 (147)
T ss_dssp HHHHHHHTS-GGGEEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECC-------CEEEEECHHHHHH
T ss_pred HHHHHHHHC-CCCCcCHHHHHHHHC-C----CHHHHHHHHHHHHhCCCEEEeecCC---cCceeEEEECHHHHHH
Confidence 345555432 125899999999999 9 9999999999999999999864211 23 26678877643
No 403
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=92.05 E-value=0.16 Score=36.92 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=32.3
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
..|.++||+.++ + ++..+.+.++.|...|+++..
T Consensus 51 ~ps~~~LA~~l~-~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMT-V----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSS-S----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 479999999999 9 999999999999999999985
No 404
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=91.95 E-value=0.17 Score=37.59 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=42.5
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCCcchHHHHHHHHHhCCcccccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
--+.-|++.|...+ ++.|++||.+.+ + + +..-++|.|+.|+..|++.+..
T Consensus 22 ~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~-i----s~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 22 PQRHAILEYLVNSM--AHPTADDIYKALEGKFPN-M----SVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTT-C----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCC-C----ChhhHHHHHHHHHHCCCEEEEe
Confidence 34566899998754 699999999999 5 6 8889999999999999999863
No 405
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.91 E-value=0.17 Score=39.49 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=44.1
Q ss_pred HHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 25 AMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 25 ~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++....+..|...|.+ +++|..+||+.+| + ++..+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~----~~~s~~eLA~~lg-l----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN----KEMTISQLSEILG-K----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT----CCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 3344567778888884 5899999999999 9 999999999999999999975
No 406
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=91.89 E-value=0.12 Score=41.01 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=44.1
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFV 105 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~ 105 (231)
++++..+||+.++ + ++..+.+.++.|...|++++.. .+.+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~-v----s~~tvs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQ-V----SPPAVTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHC-C----ChhHHHHHHHHHHHCCCEEEec------CCCeEECHHHHHHH
Confidence 6999999999999 9 9999999999999999999852 46788999887544
No 407
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.88 E-value=0.097 Score=41.25 Aligned_cols=65 Identities=14% Similarity=-0.040 Sum_probs=49.8
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhcccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYFV 105 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L~ 105 (231)
.++.|+..|... +++|..+||+.++ + +...+.++++.|...|++++..... ++ .+.+|+.+..+.
T Consensus 49 ~q~~iL~~L~~~---~~~t~~eLa~~l~-i----~~stvs~~l~~Le~~GlV~r~~~~~---DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 49 NEHHILWIAYQL---NGASISEIAKFGV-M----HVSTAFNFSKKLEERGYLRFSKRLN---DKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHH---TSEEHHHHHHHTT-C----CHHHHHHHHHHHHHHTSEEEECC---------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEecCCC---CCceEEEEECHHHHHHH
Confidence 345577778765 5899999999999 9 9999999999999999999853211 22 467888876443
No 408
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.87 E-value=0.17 Score=34.69 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=40.8
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++.|+..|...|. .+++..+||++++ + +...+.++|..|...|++.+.
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~-l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSN-L----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEe
Confidence 4557788876431 4899999999999 9 999999999999999999954
No 409
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.80 E-value=0.12 Score=37.56 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=39.0
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+..++..|.... +++|..+||+.++ + ++..+.+++..|...|++++.
T Consensus 28 ~~~il~~L~~~~--~~~t~~ela~~l~-~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 28 VGAVYAILYLSD--KPLTISDIMEELK-I----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 334566664222 5899999999999 9 999999999999999999985
No 410
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=91.38 E-value=0.26 Score=40.02 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=45.7
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechHHHhh---CCC---CCCceEeec-CCCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPHVIQH---APK---YPGVEHVGG-DMFQ 227 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~---a~~---~~ri~~~~g-Dff~ 227 (231)
..+.+.+- +....+|||+||+.|.++.-++....--+++.+|+-..--. .-+ .+-|+|..+ |+|.
T Consensus 68 ~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~ 139 (267)
T 3p8z_A 68 QWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFY 139 (267)
T ss_dssp HHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGG
T ss_pred HHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceee
Confidence 35556664 66778999999999999997777765557888997422111 111 167999999 9763
No 411
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=91.32 E-value=0.18 Score=41.79 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=29.0
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEee
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFD 204 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~D 204 (231)
.+.+..- +....+|||+|||.|.++.-++++.|--+++.+|
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~d 105 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFT 105 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEEC
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEE
Confidence 3444433 5667899999999999999888876654443333
No 412
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=91.19 E-value=0.14 Score=46.44 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=44.0
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCC------------------CCeEEEeech-HHHhhCCC------CC-
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYP------------------HIKGINFDLP-HVIQHAPK------YP- 216 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P------------------~l~~~v~Dlp-~vi~~a~~------~~- 216 (231)
.+++..+ -....+|+|.+||+|.++..+.+... ..+++++|+. .++..++. .+
T Consensus 160 ~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~ 238 (541)
T 2ar0_A 160 TIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 238 (541)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence 3444444 34567899999999999999887532 2468999984 45555442 13
Q ss_pred ----CceEeecCCCC
Q 047000 217 ----GVEHVGGDMFQ 227 (231)
Q Consensus 217 ----ri~~~~gDff~ 227 (231)
++.+..+|.+.
T Consensus 239 ~~~~~~~I~~gDtL~ 253 (541)
T 2ar0_A 239 NLDHGGAIRLGNTLG 253 (541)
T ss_dssp BGGGTBSEEESCTTS
T ss_pred cccccCCeEeCCCcc
Confidence 27888888875
No 413
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=91.17 E-value=0.13 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=28.3
Q ss_pred CCceEEEccCChhHHHHHH--------HHHC-------CCCeEEEeechH
Q 047000 173 HIQQLVDVGGCLGNTLKAI--------TSKY-------PHIKGINFDLPH 207 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l--------~~~~-------P~l~~~v~Dlp~ 207 (231)
+.-+|+|+|||+|..+..+ .+++ |++++..-|||.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~ 101 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPS 101 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTT
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCc
Confidence 3688999999999877766 4444 889999999983
No 414
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=91.13 E-value=0.19 Score=31.05 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=41.4
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
+-.|.+.|..+| |-+.++..|++.| + +.+.+..+|+-|..-|++.-
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kyg-V----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYG-V----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHC-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhC-C----CHHHHHHHHHHHHHCCCeec
Confidence 445788999877 8999999999999 9 99999999999999999864
No 415
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=91.08 E-value=0.066 Score=43.27 Aligned_cols=71 Identities=4% Similarity=0.114 Sum_probs=52.4
Q ss_pred HHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc---Ccccccch
Q 047000 23 PMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS---QRLYGLND 99 (231)
Q Consensus 23 ~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~---~~~y~~t~ 99 (231)
..+|.--.++.|+..|.. +|+|..+||+.+| + ++..+.+.|+.|...|++......+... .-.|++|+
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lg-l----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~ 76 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVS-V----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISI 76 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCC-C----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECC
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEcc
Confidence 345555567788888885 5999999999999 9 9999999999999999999721111000 01377877
Q ss_pred hhc
Q 047000 100 VSN 102 (231)
Q Consensus 100 ~s~ 102 (231)
.+.
T Consensus 77 ~~~ 79 (232)
T 2qlz_A 77 AKS 79 (232)
T ss_dssp CEE
T ss_pred chh
Confidence 665
No 416
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=91.07 E-value=0.2 Score=39.49 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=51.0
Q ss_pred HHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCC-c-Ccccccchhh
Q 047000 24 MAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADD-S-QRLYGLNDVS 101 (231)
Q Consensus 24 ~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~-~-~~~y~~t~~s 101 (231)
.+|..-.++.|...|.. +|+|..+||+.++ + ++..+.+.|+.|...|+++........ . .-.|++|+..
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~-i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELG-V----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 34445566777788865 6999999999999 9 999999999999999999985321000 0 1246766665
Q ss_pred c
Q 047000 102 N 102 (231)
Q Consensus 102 ~ 102 (231)
.
T Consensus 81 ~ 81 (202)
T 2p4w_A 81 R 81 (202)
T ss_dssp E
T ss_pred H
Confidence 4
No 417
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.99 E-value=0.23 Score=38.68 Aligned_cols=42 Identities=29% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 36 EIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 36 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+.+.+.| .|.|..|||+.+| + +...+.+.|+.|...|++.+.
T Consensus 16 ~~~~~~g--~~~s~~eia~~lg-l----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 16 EFIEKNG--YPPSVREIARRFR-I----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHS--SCCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHhC--CCCCHHHHHHHcC-C----CcHHHHHHHHHHHHCCCEEec
Confidence 3445544 5899999999999 9 888999999999999999984
No 418
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=90.88 E-value=0.19 Score=33.19 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=40.3
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.+..|.+.|... +++|..||++.++ ...+.++..+.++|+.|...|++.+.
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~-~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELS-KTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHH-HHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHh-hcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677888764 5899999999986 31111678999999999999999985
No 419
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=90.64 E-value=0.19 Score=37.29 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=41.1
Q ss_pred hhChHHHHHhcC--CCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 31 GLGVFEIIAKAG--PGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g--~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
++.+...|...+ .++++|..+||+.++ + ++..+.++++.|...|++.... .. ++ ...+|+.++.+
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~-~----~~~tvsr~v~~Le~~glVr~~~-~~---DrR~~~v~LT~~G~~~ 104 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIG-V----ERTTLTRNLEVMRRDGLVRVMA-GA---DARCKRIELTAKGRAA 104 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHT-C----CHHHHHHHHHHHHHTTSBC---------------CCBCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEEeeC-CC---CCCeeEEEECHHHHHH
Confidence 444556665431 114799999999999 9 9999999999999999995431 11 22 36677777643
No 420
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=90.52 E-value=0.42 Score=39.66 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechH-HHhhCC
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPH-VIQHAP 213 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~ 213 (231)
..++..+. .....|||++||+|..+.++++. +-+++.+|+.+ .++.++
T Consensus 226 ~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 226 ERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 34445443 34578999999999999999886 46899999854 555444
No 421
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=90.50 E-value=0.37 Score=33.64 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhC
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASH 78 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~ 78 (231)
.+.++||+..|.. +..|..|||+.+| + +...+.|+=|+|-.+
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lG-i----S~stISRi~r~L~~l 85 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELG-A----GIATITRGSNSLKAA 85 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHC-C----CHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHC-C----ChhhhhHHHHHHHHc
Confidence 5678999999988 5899999999999 9 999999998777543
No 422
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=90.47 E-value=0.11 Score=47.37 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=39.0
Q ss_pred ceEEEccCChhHHHHHHHHHCC---------------CCeEEEeec-hHHHhhCCCC-------CCceEeecCCCCC
Q 047000 175 QQLVDVGGCLGNTLKAITSKYP---------------HIKGINFDL-PHVIQHAPKY-------PGVEHVGGDMFQN 228 (231)
Q Consensus 175 ~~vvDVGGG~G~~~~~l~~~~P---------------~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gDff~~ 228 (231)
.+|+|.+||+|.++.++++..+ +.++.++|+ |.++..++.+ .+|.+..+|.+..
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~ 322 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD 322 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC
Confidence 4999999999999999876543 567899998 4455555431 3455588887754
No 423
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=90.44 E-value=0.35 Score=36.10 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCCcchHHHHHHHHHhCCcccccc
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
+--+.-|++.|...+ ++.|++||.+.+ + + +..-+.|.|+.|+..|++.+..
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~-i----s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKN-T----SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTT-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCC-C----CHhhHHHHHHHHHHCCcEEEEE
Confidence 556677999998754 699999999998 5 6 8889999999999999999863
No 424
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=90.29 E-value=0.25 Score=38.21 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=47.2
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCc-ccccccCCCCcCcccccchhh
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSA-VECSIDDADDSQRLYGLNDVS 101 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~-l~~~~~~~~~~~~~y~~t~~s 101 (231)
--...|.+.|..++ +++|..+||++++ + +.+.++|=+..|...|+ +... .+.|.+++..
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~-v----S~~Ti~rdi~~L~~~G~~I~~~-------~~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELS-V----SRQVIVQDIAYLRSLGYNIVAT-------PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHT-S----CHHHHHHHHHHHHHHTCCCEEE-------TTEEECCTTT
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCeEEEE-------CCEEEECCcc
Confidence 44567888898643 5799999999999 9 99999999999999999 6542 4557776654
No 425
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.24 E-value=0.24 Score=40.37 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=49.7
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
.++.|...|...+ ++++|..+||+.++ + ++..+.++++-|...|++++..... ++ ...+|+.+..+
T Consensus 159 ~q~~vL~~L~~~~-~~~~t~~eLa~~l~-i----~~~tvt~~v~rLe~~GlV~R~~~~~---DrR~~~i~LT~~G~~~ 227 (250)
T 1p4x_A 159 VEFTILAIITSQN-KNIVLLKDLIETIH-H----KYPQTVRALNNLKKQGYLIKERSTE---DERKILIHMDDAQQDH 227 (250)
T ss_dssp HHHHHHHHHHTTT-TCCEEHHHHHHHSS-S----CHHHHHHHHHHHHHHTSSEEEECSS---STTCEEEECCHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCcCHHHHHHHHC-C----ChhhHHHHHHHHHHCCCEEeeCCCC---CCCeEEEEECHHHHHH
Confidence 4455777777643 12699999999999 9 9999999999999999999864321 33 25677777643
No 426
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=89.81 E-value=0.59 Score=33.34 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=58.7
Q ss_pred HHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhC------CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc--Cccc
Q 047000 24 MAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQL------PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS--QRLY 95 (231)
Q Consensus 24 ~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~------g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~--~~~y 95 (231)
+.++-..++=|.-.|.. +|.+--+|++.+ + + ++..|...|+-|...|+++......+.. --.|
T Consensus 6 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~-i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y 76 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTE-V----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFY 76 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTT-C----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEE
T ss_pred HHHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCC-C----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEE
Confidence 34455566667777877 699999999997 6 7 9999999999999999999753210000 1249
Q ss_pred ccchhhc-cccCCCCCCchhhHHHHH
Q 047000 96 GLNDVSN-YFVPNKDGSYRSQLKEAI 120 (231)
Q Consensus 96 ~~t~~s~-~L~~~~~~~~~~~L~~~l 120 (231)
++|+.++ .|..-. ..|..+.+.+
T Consensus 77 ~LT~~G~~~l~~~~--~~~~~~~~~i 100 (117)
T 4esf_A 77 SLNEAGRQELELFW--KKWDFVSSKI 100 (117)
T ss_dssp EECHHHHHHHHHHH--HHHHHHHHHH
T ss_pred EECHHHHHHHHHHH--HHHHHHHHHH
Confidence 9999997 443321 1266655544
No 427
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=89.71 E-value=0.13 Score=42.13 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHH--CCCCeE--EEeechHHHhhCCCC-CCc---eEeec-CCCCC
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSK--YPHIKG--INFDLPHVIQHAPKY-PGV---EHVGG-DMFQN 228 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~--~v~Dlp~vi~~a~~~-~ri---~~~~g-Dff~~ 228 (231)
.+-+.+ -+....+|||+||+.|..+.-.+++ -..+++ +..|+| +...... .++ .++.| ||++.
T Consensus 64 EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~--~~P~~~~~~Gv~~i~~~~G~Df~~~ 135 (269)
T 2px2_A 64 WLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH--EEPMLMQSYGWNIVTMKSGVDVFYK 135 (269)
T ss_dssp HHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS--CCCCCCCSTTGGGEEEECSCCGGGS
T ss_pred HHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc--cCCCcccCCCceEEEeeccCCccCC
Confidence 455555 3778899999999999999988886 222233 444431 1112111 455 55547 99863
No 428
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=89.68 E-value=0.14 Score=46.52 Aligned_cols=56 Identities=13% Similarity=-0.034 Sum_probs=43.5
Q ss_pred CCceEEEccCChhHHHHHHHHHC---CCCeEEEeech-HHHhhCCC------C--CCceEeecCCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKY---PHIKGINFDLP-HVIQHAPK------Y--PGVEHVGGDMFQN 228 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~---P~l~~~v~Dlp-~vi~~a~~------~--~ri~~~~gDff~~ 228 (231)
...+|+|.+||+|.++.++++.. +..++.++|+- .++..++. . +++.+..+|.+..
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~ 288 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDE 288 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecc
Confidence 46799999999999999999885 46778999984 45555543 1 4678899998874
No 429
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=89.31 E-value=0.45 Score=35.70 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=59.5
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCC-CcCc----ccccchhhc-c
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDAD-DSQR----LYGLNDVSN-Y 103 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~-~~~~----~y~~t~~s~-~ 103 (231)
.++.|+..|... +.+..|+.+|++.++.+ ....++|-|..|+..|++++...... ...| .|.+|+.++ .
T Consensus 30 tR~~IL~~Ll~~-p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 30 TRLDVLHQILAQ-PDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp HHHHHHHHHHHS-TTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 566777887654 22468999999987745 88899999999999999996421100 0012 699999998 5
Q ss_pred ccCCCCCC---chhhHHHHH
Q 047000 104 FVPNKDGS---YRSQLKEAI 120 (231)
Q Consensus 104 L~~~~~~~---~~~~L~~~l 120 (231)
|....... .|..|.+.+
T Consensus 105 l~~y~~la~~~alr~l~~~v 124 (151)
T 3u1d_A 105 LRAVSMYEEAAVWRSVYEQM 124 (151)
T ss_dssp HHHTTCSTHHHHTHHHHHHS
T ss_pred HHHhHHHhHHHHHHHHHHHh
Confidence 54422221 388888776
No 430
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=89.26 E-value=0.21 Score=43.32 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=28.4
Q ss_pred CceEEEccCChhHHHHHHHHH-----------------CCCCeEEEeech
Q 047000 174 IQQLVDVGGCLGNTLKAITSK-----------------YPHIKGINFDLP 206 (231)
Q Consensus 174 ~~~vvDVGGG~G~~~~~l~~~-----------------~P~l~~~v~Dlp 206 (231)
.-+|+|+||++|..+..+... .|+++++.-|||
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp 102 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF 102 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence 688999999999988877666 588899999998
No 431
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=89.17 E-value=0.34 Score=33.50 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=41.2
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSN 102 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~ 102 (231)
++.+..+||+.++ + +...|.|.|..|...|+++.... . ++-+...+|+.++
T Consensus 35 ~~~s~~eLa~~l~-l----~~stLsR~l~rLe~~GLV~r~~~-~-D~R~~v~LT~~G~ 85 (96)
T 2obp_A 35 TPWSLPKIAKRAQ-L----PMSVLRRVLTQLQAAGLADVSVE-A-DGRGHASLTQEGA 85 (96)
T ss_dssp CCCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEEEC-T-TSCEEEEECHHHH
T ss_pred CCcCHHHHHHHhC-C----chhhHHHHHHHHHHCCCEEeecC-C-CCceeEEECHHHH
Confidence 6899999999999 9 99999999999999999998542 1 1123456777765
No 432
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=88.77 E-value=0.37 Score=35.44 Aligned_cols=55 Identities=20% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCC-CCCCcchHHHHHHHHHhCCcccccc
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQLPATK-NKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~-~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
+.-+.-|++.|...+ ++.|++||.+.+. -. ...+..-+.|.|+.|+..|++.+..
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLK-HKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 455777899998754 6999999999883 10 1128889999999999999999863
No 433
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=88.64 E-value=0.29 Score=43.24 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=47.7
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSN 102 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~ 102 (231)
++.|...|... +++++|..+||++++ + ++..+.|+++-|...|++++.+... ++ ...+|+.++
T Consensus 406 q~~vl~~l~~~-~~~~~~~~~l~~~~~-~----~~~~~t~~~~~le~~g~v~r~~~~~---D~R~~~i~lT~~g~ 471 (487)
T 1hsj_A 406 EIYILNHILRS-ESNEISSKEIAKCSE-F----KPYYLTKALQKLKDLKLLSKKRSLQ---DERTVIVYVTDTQK 471 (487)
T ss_dssp HHHHHHHHHTC-SCSEEEHHHHHHSSC-C----CHHHHHHHHHHHHTTTTSCCEECCS---SSSCCEEECCSSHH
T ss_pred HHHHHHHHHhC-CCCCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEeecCCCC---CCCeEEEEECHHHH
Confidence 44577777664 114899999999999 9 9999999999999999999864221 33 255666665
No 434
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=88.40 E-value=0.29 Score=35.98 Aligned_cols=35 Identities=6% Similarity=0.020 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
...|.++||+.++ + ++..+.+++..|...|+++..
T Consensus 50 ~~ps~~~LA~~~~-~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMS-I----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSS-S----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 4689999999999 9 999999999999999999984
No 435
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=87.68 E-value=0.46 Score=41.13 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=45.2
Q ss_pred HHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 26 MQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 26 L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++..-+..|++.|..+ +++|..|||+.++ + +...+.++++.|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~-l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQ-L----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTT-C----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEee
Confidence 4555666789999886 6999999999999 9 999999999999999999984
No 436
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=87.34 E-value=0.95 Score=32.08 Aligned_cols=87 Identities=11% Similarity=0.179 Sum_probs=58.8
Q ss_pred HHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhC--------CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc--C
Q 047000 23 PMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQL--------PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS--Q 92 (231)
Q Consensus 23 ~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~--~ 92 (231)
.+.++-..++-|...|.. +|.+--+|.+.+ + + ++..+.+.|+-|...|+++......+.. .
T Consensus 6 ~~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~-i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~r 76 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEME-L----NEATLYTIFKRLEKDGIISSYWGDESQGGRR 76 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCC-C----CHHHHHHHHHHHHHTTSEEEEEEC----CCE
T ss_pred HHHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCC-C----CcchHHHHHHHHHHCCCEEEEeeccCCCCCc
Confidence 345555567777778887 699999999887 5 6 8999999999999999999753110000 1
Q ss_pred cccccchhhc-cccCCCCCCchhhHHHHH
Q 047000 93 RLYGLNDVSN-YFVPNKDGSYRSQLKEAI 120 (231)
Q Consensus 93 ~~y~~t~~s~-~L~~~~~~~~~~~L~~~l 120 (231)
-.|++|+.++ .|..-. ..|..+.+.+
T Consensus 77 k~Y~LT~~G~~~l~~~~--~~~~~~~~~i 103 (116)
T 3f8b_A 77 KYYRLTEIGHENMRLAF--ESWSRVDKII 103 (116)
T ss_dssp EEEEECHHHHHHHHHHH--HHHHHHHHHH
T ss_pred eEEEECHHHHHHHHHHH--HHHHHHHHHH
Confidence 2489999987 333221 1266555544
No 437
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=87.13 E-value=0.35 Score=41.62 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 22 LPMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 22 ~~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
...+++...+..|++.|. + +++|..|||+.++ + ++..+.++++.|...|++.+.
T Consensus 13 ~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~g-l----s~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 13 MPKSVRAENISRILKRIM-K---SPVSRVELAEELG-L----TKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp ---------CCCSHHHHH-H---SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEee
Confidence 456777778888999999 7 5999999999999 9 999999999999999999985
No 438
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=87.08 E-value=0.6 Score=38.97 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=31.9
Q ss_pred HHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeec
Q 047000 163 KILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDL 205 (231)
Q Consensus 163 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 205 (231)
.+.+. .-+....++||+||+.|.++.-++++.+-..++.+|+
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl 113 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL 113 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence 33344 3356789999999999999999998876555666666
No 439
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=87.02 E-value=0.39 Score=33.63 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=48.4
Q ss_pred HHHhhChHHHHHhcCCCCCCCHHHHHHhC----CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcC--cccccchhh
Q 047000 28 AVIGLGVFEIIAKAGPGAKLSASEIAAQL----PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQ--RLYGLNDVS 101 (231)
Q Consensus 28 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~----g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~--~~y~~t~~s 101 (231)
-..++-|...|.. +|.+-.+|++.+ + + ++..+.++|+.|...|+++...... +.. -.|++|+.+
T Consensus 8 g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~-i----~~~tly~~L~~Le~~GlI~~~~~~~-~~r~r~~y~LT~~G 77 (108)
T 3l7w_A 8 LLIEYLILAIVSK----HDSYGYDISQTIKLIAS-I----KESTLYPILKKLEKAGYLSTYTQEH-QGRRRKYYHLTDSG 77 (108)
T ss_dssp HHHHHHHHHHHHH----SCEEHHHHHHHHTTTCC-C----CHHHHHHHHHHHHHTTSEEEEEEEE-TTEEEEEEEECHHH
T ss_pred HHHHHHHHHHHHc----CCCcHHHHHHHHHHHhC-C----CcChHHHHHHHHHHCCCeEEEeecC-CCCcceEEEECHHH
Confidence 3455667777777 588888888774 6 7 9999999999999999999753211 001 148899988
Q ss_pred cc
Q 047000 102 NY 103 (231)
Q Consensus 102 ~~ 103 (231)
+.
T Consensus 78 ~~ 79 (108)
T 3l7w_A 78 EK 79 (108)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 440
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=86.70 E-value=0.42 Score=38.13 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCH--HHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcccc
Q 047000 47 LSA--SEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFV 105 (231)
Q Consensus 47 ~t~--~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~ 105 (231)
.|. .+||+.++ + ++..+.++++.|...|++++.. +..+.+|+.+..+.
T Consensus 23 ~~~~~~~La~~l~-v----s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 23 VTPLRARIAERLD-Q----SGPTVSQTVSRMERDGLLRVAG------DRHLELTEKGRALA 72 (230)
T ss_dssp SCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHHH
T ss_pred CCCcHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEeC------CccEEECHHHHHHH
Confidence 555 99999999 9 9999999999999999999842 45788999887443
No 441
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=86.41 E-value=0.8 Score=35.02 Aligned_cols=64 Identities=9% Similarity=0.334 Sum_probs=47.4
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhC--------CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc--Ccccccch
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQL--------PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS--QRLYGLND 99 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~--------g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~--~~~y~~t~ 99 (231)
+++-|...|.. +|.+..+|++.+ + + ++..+.+.|+-|...|+++......+.. .-.|++|+
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~-~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWK-A----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQ 73 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCC-C----CHHHHHHHHHHHHHTTSEEECCC---------CEEECH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccC-C----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeCh
Confidence 34557777876 599999999998 4 5 8999999999999999999743111000 12599999
Q ss_pred hhc
Q 047000 100 VSN 102 (231)
Q Consensus 100 ~s~ 102 (231)
.++
T Consensus 74 ~G~ 76 (179)
T 1yg2_A 74 AGR 76 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 442
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.30 E-value=0.76 Score=40.13 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 25 AMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 25 ~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.++..-+..|++.|... +++|..|||+.++ + +...+.++++.|...|++.+.
T Consensus 35 ~~r~~n~~~il~~l~~~---~~~sr~ela~~~g-l----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 35 HIKQINAGRVYKLIDQK---GPISRIDLSKESE-L----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHH---CSBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHc---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEec
Confidence 35666777799999886 5999999999999 9 999999999999999999984
No 443
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=86.07 E-value=0.18 Score=35.83 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.2
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++.|...|... +++|..+||+.++ ...+.++..+.++|+.|...|++++.
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~-~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQ-MQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHh-ccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 45566677664 5899999999988 51111488999999999999999985
No 444
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=85.58 E-value=0.97 Score=32.13 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=58.5
Q ss_pred HHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhC------CCCCCCCCcchHHHHHHHHHhCCcccccccCCCCc--Ccc
Q 047000 23 PMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQL------PATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS--QRL 94 (231)
Q Consensus 23 ~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~------g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~--~~~ 94 (231)
.+.++-..++=|...|.. +|.+--+|++.+ + + ++..|...|+-|...|+++......+.. --.
T Consensus 7 ~~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~-i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~ 77 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTE-I----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKF 77 (116)
T ss_dssp HHHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSS-C----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEE
T ss_pred HHHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCC-C----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceE
Confidence 344444556667777876 699999999997 5 6 8999999999999999999753111000 124
Q ss_pred cccchhhc-cccCCCCCCchhhHHHHH
Q 047000 95 YGLNDVSN-YFVPNKDGSYRSQLKEAI 120 (231)
Q Consensus 95 y~~t~~s~-~L~~~~~~~~~~~L~~~l 120 (231)
|++|+.++ .|..-. ..|..+.+.+
T Consensus 78 Y~lT~~G~~~l~~~~--~~~~~~~~~i 102 (116)
T 3hhh_A 78 YRLTSSGEAELADFW--QRWTLLSKQV 102 (116)
T ss_dssp EEECHHHHHHHHHHH--HHHHHHHHHH
T ss_pred EEECHHHHHHHHHHH--HHHHHHHHHH
Confidence 99999987 443321 1266555544
No 445
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=85.57 E-value=1.7 Score=30.75 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCC--CCC-CCCc-chHHHHHHHHHhCCcccccccCCC-CcCcccccchh
Q 047000 26 MQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPA--TKN-KDAP-MMLDRMLRLLASHSAVECSIDDAD-DSQRLYGLNDV 100 (231)
Q Consensus 26 L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~--~~~-~~~~-~~l~rlL~~L~~~g~l~~~~~~~~-~~~~~y~~t~~ 100 (231)
+....++-|...|.. +|.+..+|++.+.. ... +.++ ..|.+.|+-|...|+++......+ +.--.|++|+.
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~ 85 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQ 85 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHH
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChH
Confidence 344566677788876 59999999998841 000 1378 899999999999999987532100 00125899998
Q ss_pred hcc
Q 047000 101 SNY 103 (231)
Q Consensus 101 s~~ 103 (231)
++.
T Consensus 86 G~~ 88 (118)
T 2esh_A 86 GKL 88 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 446
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=85.53 E-value=0.36 Score=37.25 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=42.3
Q ss_pred HHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 25 AMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 25 ~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+|.-=.++.|+..|.. ++.|+.+||+.++++ +...+.+-|+.|...|+++..
T Consensus 19 ~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~ 70 (182)
T 4g6q_A 19 LLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVT 70 (182)
T ss_dssp HTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 3334467888888876 699999999998426 677899999999999999854
No 447
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=85.42 E-value=0.57 Score=37.29 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=42.4
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFV 105 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~ 105 (231)
+++|..++|+.++ + +...+.+.++.|...|+|++..... ...+.+|+.+..+.
T Consensus 26 ~~~s~s~aA~~L~-i----sq~avSr~I~~LE~~~L~~R~~~~R---~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLG-I----SQQSASRIIIDLEKNGYITRTVTKR---GQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEEEETT---EEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEEEcCC---eEEEEECHHHHHHH
Confidence 4689999999999 9 9999999999999999999852100 24577888887443
No 448
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=85.42 E-value=0.66 Score=32.86 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.9
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.++.|...|... +|+|..+||+.++ ...+.++..+.++|+-|...|++.+.
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~-~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQ-KYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHH-TTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHh-hcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677788775 5899999999996 41112688999999999999999985
No 449
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=85.13 E-value=0.65 Score=44.21 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=33.6
Q ss_pred CCCCceEEEccCChhHHHHHHHHHCCC---CeEEEeech-HHHhhC
Q 047000 171 FEHIQQLVDVGGCLGNTLKAITSKYPH---IKGINFDLP-HVIQHA 212 (231)
Q Consensus 171 ~~~~~~vvDVGGG~G~~~~~l~~~~P~---l~~~v~Dlp-~vi~~a 212 (231)
+....+|+|.|||+|.++.+++++.++ .+++++|+. .+++.+
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA 364 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL 364 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence 445689999999999999999998873 578999984 455544
No 450
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=85.03 E-value=1.8 Score=26.70 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=38.5
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchh
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDV 100 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 100 (231)
.++|+.|+|...+ + +-+..+..|+.|-..|-+.+. ..+|++.|-
T Consensus 17 QGMTaGEVAA~f~-w----~Le~ar~aLeqLf~~G~LRKR-------sSRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFG-W----PLEKARNALEQLFSAGTLRKR-------SSRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE-------CCEEEECC-
T ss_pred ccccHHHHHHHhC-C----cHHHHHHHHHHHHhcchhhhh-------ccccccCcc
Confidence 5899999999999 9 999999999999999999984 578887653
No 451
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=84.81 E-value=0.79 Score=38.35 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeech
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLP 206 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 206 (231)
..+.+.+. +....+|||+||++|.++.-++....--++..+|+-
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG 127 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKG 127 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcC
Confidence 34555555 666779999999999999977666655578888874
No 452
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=84.64 E-value=0.28 Score=42.19 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=38.7
Q ss_pred CCCceEEEccCChhHHHHHHHHH----------------CCCCeEEEeech-----HHHhhCCCC---CC---ceEeecC
Q 047000 172 EHIQQLVDVGGCLGNTLKAITSK----------------YPHIKGINFDLP-----HVIQHAPKY---PG---VEHVGGD 224 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~~~----------------~P~l~~~v~Dlp-----~vi~~a~~~---~r---i~~~~gD 224 (231)
++.-+|+|+||++|..+..+.+. .|+++++.-||| .+....... .+ +.-++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45688999999999754433322 577888999998 233333321 12 5567888
Q ss_pred CCCC-CC
Q 047000 225 MFQN-VP 230 (231)
Q Consensus 225 ff~~-~P 230 (231)
|+.- +|
T Consensus 130 Fy~rlfp 136 (359)
T 1m6e_X 130 FYGRLFP 136 (359)
T ss_dssp SSSCCSC
T ss_pred hhhccCC
Confidence 8875 44
No 453
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.61 E-value=0.63 Score=32.06 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=43.2
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
-+.-|+..|...|+ .+++..+|..+++ + +...+.++|..|...+++...
T Consensus 38 ~E~lVy~~I~~aGn-~GIw~kdL~~~tn-L----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGN-KGIWSRDVRYKSN-L----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHHT-C----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhC-C----CHHHHHHHHHHHHhCCCEEEe
Confidence 45668888887653 6899999999999 9 999999999999999999985
No 454
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=84.60 E-value=0.75 Score=38.63 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=42.3
Q ss_pred CCceEEEccCChhHHHHHHHHHCC-CCeEEEeechHHHhhCC---------CCCCceEeecCCCC
Q 047000 173 HIQQLVDVGGCLGNTLKAITSKYP-HIKGINFDLPHVIQHAP---------KYPGVEHVGGDMFQ 227 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~a~---------~~~ri~~~~gDff~ 227 (231)
+...||++|||.=+.+..+. +| +++++-+|+|.|++.-+ ..++..+++.|+.+
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 46789999999999877765 35 48899999999987543 23678999999976
No 455
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=84.06 E-value=0.84 Score=33.26 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=41.4
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCCcchHHHHHHHHHhCCcccccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
--+.-|++.|...+ +++.|++||.+.+ + + +..-+.|.|+.|+..|++.+..
T Consensus 18 ~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~-i----s~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 18 LPRVKILQMLDSAE-QRHMSAEDVYKALMEAGED-V----GLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCC-C----CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCC-C----CHHHHHHHHHHHHHCCcEEEEE
Confidence 34566889997631 1489999999998 5 6 8889999999999999999863
No 456
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=84.02 E-value=1.2 Score=38.68 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCCceEEEccCChhHHHHHHH-HHCCC-CeEEEeec-hHHHh
Q 047000 172 EHIQQLVDVGGCLGNTLKAIT-SKYPH-IKGINFDL-PHVIQ 210 (231)
Q Consensus 172 ~~~~~vvDVGGG~G~~~~~l~-~~~P~-l~~~v~Dl-p~vi~ 210 (231)
.+..+++|||++.|.++..++ +..|. .+++.|+- |...+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~ 266 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQ 266 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 567899999999999999988 67776 78999995 44443
No 457
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=83.54 E-value=1 Score=36.51 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=48.6
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCc---ccccchhhccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQR---LYGLNDVSNYF 104 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~---~y~~t~~s~~L 104 (231)
++.+...|...+ ++++|..+||+.++ + ++..+.+++.-|...|++.+..... +. ...+|+.++.+
T Consensus 36 q~~vL~~L~~~~-~~~~~~~el~~~l~-~----~~~t~t~~l~rLe~~G~i~R~~~~~---DrR~~~i~LT~~G~~~ 103 (250)
T 1p4x_A 36 EFILLTYLFHQQ-ENTLPFKKIVSDLC-Y----KQSDLVQHIKVLVKHSYISKVRSKI---DERNTYISISEEQREK 103 (250)
T ss_dssp HHHHHHHHHSCS-CSEEEHHHHHHHSS-S----CGGGTHHHHHHHHHTTSCEEEECSS---STTSEEEECCHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcCHHHHHHHHC-C----CHhhHHHHHHHHHHCCCEEecCCCC---CCCeEEEEECHHHHHH
Confidence 345666776531 14799999999999 9 9999999999999999999864321 22 25577777643
No 458
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=83.26 E-value=0.47 Score=32.66 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=39.4
Q ss_pred HHHHHHhhChHH-HHHhcCCCCCC-CHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 25 AMQAVIGLGVFE-IIAKAGPGAKL-SASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 25 ~L~~a~~lglfd-~L~~~g~~~~~-t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.+.-.++..|.+ .+.. | ..+ |..+||+.++ + +...+++.|+.|...|+++..
T Consensus 15 ~l~~~i~~~I~~~~l~~-g--~~lps~~eLa~~~~-v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-G--DTLPSVADIRAQFG-V----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-T--SBCCCHHHHHHHSS-S----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHhCCCCC-c--CCCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEe
Confidence 344444445554 2332 2 566 9999999999 9 999999999999999999875
No 459
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=82.90 E-value=1.2 Score=35.47 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=41.1
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhcccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFV 105 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~ 105 (231)
+.+..+||+.++ + ++..+.++++.|...|++++.. ...+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~-v----s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLE-Q----SGPTVSQTVARMERDGLVVVAS------DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEECT------TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEeC------CCCeEECHHHHHHH
Confidence 345699999999 9 9999999999999999999841 45688999887543
No 460
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=82.75 E-value=0.96 Score=35.89 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=32.0
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
++|-++||..+| + .+..+.|+|..|...|+++.
T Consensus 177 ~~t~~~iA~~lG-~----sr~tvsR~l~~L~~~g~I~~ 209 (250)
T 3e6c_C 177 PLSQKSIGEITG-V----HHVTVSRVLASLKRENILDK 209 (250)
T ss_dssp CCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCCeEe
Confidence 789999999999 9 99999999999999999998
No 461
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=82.65 E-value=0.8 Score=35.99 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=41.1
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYF 104 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L 104 (231)
+|++..+||+.++ + .+..++..++.|...|+++.. .+...+|+.++.+
T Consensus 29 ~~V~~~~LA~~Lg-v----S~~SV~~~lkkL~e~GLV~~~-------~~Gv~LTe~G~~~ 76 (200)
T 2p8t_A 29 EPLGRKQISERLE-L----GEGSVRTLLRKLSHLDIIRSK-------QRGHFLTLKGKEI 76 (200)
T ss_dssp SCBCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHH
T ss_pred CCccHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEe-------CCCeEECHHHHHH
Confidence 4899999999999 9 999999999999999999983 4567788888643
No 462
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=82.14 E-value=0.27 Score=41.90 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccchhhccccC
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLNDVSNYFVP 106 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~~s~~L~~ 106 (231)
-+..|...|... +++|..+||+.++ + ++..++|.|+.|...|+++.. .....+|+.++.+..
T Consensus 21 r~~~iL~~l~~~---~~~t~~eLa~~l~-v----s~~Tv~r~l~~Le~~Glv~~~-------~~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 21 ERFQILRNIYWM---QPIGRRSLSETMG-I----TERVLRTETDVLKQLNLIEPS-------KSGMTLTERGLEVYQ 82 (345)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE-------ecceEEcHHHHHHHH
Confidence 355677888765 5899999999999 9 999999999999999999852 234668888875554
No 463
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=81.94 E-value=1 Score=32.69 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=40.9
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.++.|...|.... +++|..+|++.++ ...+.++..+.++|+-|...|++.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~-~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALS-ARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHT-TTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHh-ccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4566777887621 5899999999996 31122788999999999999999985
No 464
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=81.50 E-value=1.2 Score=37.46 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=43.9
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccch
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLND 99 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 99 (231)
+..|.+.|.+. +++|.++||+.++ + ++..++|-+..|...|++.+.. . +..|.+.+
T Consensus 7 ~~~Il~~L~~~---~~~s~~eLa~~l~-v----S~~ti~r~l~~L~~~G~~i~~~-~----g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANG---EFHSGEQLGETLG-M----SRAAINKHIQTLRDWGVDVFTV-P----GKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTS---SCBCHHHHHHHHT-S----CHHHHHHHHHHHHHTTCCCEEE-T----TTEEECSS
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHC-C----CHHHHHHHHHHHHhCCCcEEEe-c----CCCcEEee
Confidence 34577778653 6899999999999 9 9999999999999999987532 1 33566643
No 465
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=81.48 E-value=1.1 Score=31.48 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=32.4
Q ss_pred CCC-CHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 45 AKL-SASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 45 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
..+ |..+||+.+| + +...+++.++.|...|+++..
T Consensus 31 ~~lPs~~~La~~~~-v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQ-I----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEe
Confidence 566 8999999999 9 999999999999999999875
No 466
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=81.05 E-value=2.9 Score=36.22 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=41.5
Q ss_pred CchHHHHHHHHHHhchhhhHHHHHHhCCCCCCCceEEEccCChhHHHHHHHHH---C----CCCeEEEeechHHHh
Q 047000 142 DPRFNEVFNIAMYNYTNLVIQKILEAYKGFEHIQQLVDVGGCLGNTLKAITSK---Y----PHIKGINFDLPHVIQ 210 (231)
Q Consensus 142 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~---~----P~l~~~v~Dlp~vi~ 210 (231)
.|+....|.+..+..- ...| .... .+..-+||++|+|+|.++..+++. . ..++..++|..+...
T Consensus 54 apeis~~FGe~la~~~---~~~w-~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 54 SPEISQMFGELLGLWS---ASVW-KAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp HHHHCHHHHHHHHHHH---HHHH-HHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CCchHHHHHHHHHHHH---HHHH-HHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 4566666777655432 2222 2233 344568999999999999998865 2 356788898865444
No 467
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.63 E-value=1.9 Score=31.14 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=33.0
Q ss_pred CCCC-CHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 44 GAKL-SASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 44 ~~~~-t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
|..+ |..+||+.+| + +...+++.++.|...|+++..
T Consensus 25 G~~LPse~~La~~~g-v----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 25 DQRVPSTNELAAFHR-I----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp TSCBCCHHHHHHHTT-C----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CCcCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEe
Confidence 3567 8999999999 9 999999999999999999975
No 468
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=80.57 E-value=1.3 Score=33.07 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=40.7
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
+-.|.+.|. . |+.|..+||+++| + +-....-.|..|.-.|++.+..
T Consensus 13 k~~ILE~Lk-~---G~~~t~~Iak~LG-l----Shg~aq~~Ly~LeREG~V~~Vk 58 (165)
T 2vxz_A 13 LRDILALLA-D---GCKTTSLIQQRLG-L----SHGRAKALIYVLEKEGRVTRVA 58 (165)
T ss_dssp HHHHHHHHT-T---CCEEHHHHHHHHT-C----CHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHH-h---CCccHHHHHHHhC-C----cHHHHHHHHHHHHhcCceEEEE
Confidence 345778888 4 6999999999999 9 9999999999999999999864
No 469
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=80.52 E-value=1.3 Score=32.70 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=41.2
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCC-CCCCcchHHHHHHHHHhCCcccccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATK-NKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~-~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
.-+.-|++.|... ++.|+++|.+.+. -. ...+..-++|.|+.|+..|++.+..
T Consensus 19 ~qR~~Il~~l~~~---~h~ta~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 19 PQRQLVLEAVDTL---EHATPDDILGEVR-KTASGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHHHH---SSBCHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhc---CCCCHHHHHHHHH-hhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 3566688888875 3899999999873 11 1227889999999999999999863
No 470
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=80.03 E-value=0.82 Score=32.64 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCcccccch
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGLND 99 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 99 (231)
.|.++.+||+.++ + ++..+..+|+.|+..|.+... . .+.|-++.
T Consensus 19 ~p~~~~~la~~~~-~----~~~~~~~~l~~l~~~G~l~~i--~----~~~~~~~~ 62 (121)
T 2pjp_A 19 EPWWVRDLAKETG-T----DEQAMRLTLRQAAQQGIITAI--V----KDRYYRND 62 (121)
T ss_dssp SCEEHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEE--E----TTEEEEHH
T ss_pred CCCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEEe--c----CCceECHH
Confidence 4779999999999 9 999999999999999999985 2 45565444
No 471
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=79.29 E-value=1.8 Score=30.76 Aligned_cols=92 Identities=11% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCC-CCCCCcchHHHHHHHHHhCCcccccccCCCCc--Ccccccch
Q 047000 23 PMAMQAVIGLGVFEIIAKAGPGAKLSASEIAAQLPAT-KNKDAPMMLDRMLRLLASHSAVECSIDDADDS--QRLYGLND 99 (231)
Q Consensus 23 ~~~L~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~-~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~--~~~y~~t~ 99 (231)
.+.+.-..++-|...|.. +|.+.-+|++.+... ....++..+.+.|+.|...|+++......+.. .-.|++|+
T Consensus 8 ~~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~ 83 (117)
T 3elk_A 8 ERILHGLITLYILKELVK----RPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITD 83 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECH
T ss_pred HHHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 345555667777888887 699999999887510 00127789999999999999999753200000 12599999
Q ss_pred hhc-cccCCCCCCchhhHHHHH
Q 047000 100 VSN-YFVPNKDGSYRSQLKEAI 120 (231)
Q Consensus 100 ~s~-~L~~~~~~~~~~~L~~~l 120 (231)
.++ .|..-. ..|..+.+.+
T Consensus 84 ~G~~~l~~~~--~~~~~~~~~i 103 (117)
T 3elk_A 84 AGKKFLCDHS--QALQLARKII 103 (117)
T ss_dssp HHHHHHHHTS--TTHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHH
Confidence 997 554432 2377766654
No 472
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=78.45 E-value=1.4 Score=40.35 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=49.7
Q ss_pred HhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHh-----CCcccccccCCCCcCcccccchhhc
Q 047000 30 IGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLAS-----HSAVECSIDDADDSQRLYGLNDVSN 102 (231)
Q Consensus 30 ~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~-----~g~l~~~~~~~~~~~~~y~~t~~s~ 102 (231)
.+.-|.+.|..+ +.+|..+|++.++ + ++..+.+.|+.|.. .|+++.. ++.|.+++...
T Consensus 431 ~~~~iL~~l~~~---~~it~~~la~~l~-~----s~~~~~~~L~~L~~~~~~~~glie~~-------g~~y~L~~~~~ 493 (583)
T 3lmm_A 431 RIAIVLYLLFQR---PFITIDVVARGLQ-S----GKEAARNALEAARQTTVAGAPLIIAH-------DGVWLLGNACR 493 (583)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHT-S----CHHHHHHHHHHHHTCEETTEESEEEE-------TTEEEECHHHH
T ss_pred hHHHHHHHHHHC---CCcCHHHHHHHhC-c----CHHHHHHHHHHHHhhhccccceEEEe-------CCEEEECHHHH
Confidence 345578888876 5899999999999 9 99999999999999 8899983 67899998765
No 473
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=78.38 E-value=1.7 Score=30.67 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=53.8
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCC-----CCCCCCCcchHHHHHHHHHhCCcccccccCCCCc--Ccccccchhhc-
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLP-----ATKNKDAPMMLDRMLRLLASHSAVECSIDDADDS--QRLYGLNDVSN- 102 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g-----~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~--~~~y~~t~~s~- 102 (231)
++-|...|.. +|.+--+|++.+. .+ ++..|...|+-|...|+++......+.. .-.|++|+.++
T Consensus 11 ~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~ 82 (115)
T 4esb_A 11 EGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLE 82 (115)
T ss_dssp HHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHH
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHH
Confidence 4445667776 5899999998873 16 8999999999999999999753111000 12499999987
Q ss_pred cccCCCCCCchhhHHHHHh
Q 047000 103 YFVPNKDGSYRSQLKEAIT 121 (231)
Q Consensus 103 ~L~~~~~~~~~~~L~~~l~ 121 (231)
.|..-. ..|..+.+.+.
T Consensus 83 ~l~~~~--~~~~~~~~~i~ 99 (115)
T 4esb_A 83 QLEEFK--QSWGMVSTTVN 99 (115)
T ss_dssp HHHHHH--HHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHH
Confidence 333321 13666665543
No 474
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=78.28 E-value=1.2 Score=33.07 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=40.8
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCCcchHHHHHHHHHhCCcccccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQL-----PATKNKDAPMMLDRMLRLLASHSAVECSI 85 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 85 (231)
--+.-|++.|...+ +++.|++||.+.+ + + +..-++|.|+.|+..|++.+..
T Consensus 17 ~qR~~Il~~L~~~~-~~h~sa~ei~~~l~~~~~~-i----s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 17 LPRLKILEVLQQPE-CQHISAEELYKKLIDLGEE-I----GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHHHTSGG-GSSEEHHHHHHHHHHTTCC-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCC-C----CHHHHHHHHHHHHHCCcEEEEE
Confidence 34556888886531 0489999999998 4 5 8889999999999999999863
No 475
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=78.23 E-value=2.1 Score=30.60 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCCC-CHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 44 GAKL-SASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 44 ~~~~-t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
|..+ |..+||+.+| + +...+++.+..|...|+++..
T Consensus 34 g~~Lps~~~La~~~~-v----Sr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 34 EDKLPSVREMGVKLA-V----NPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp TCBCCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCeEEEe
Confidence 3566 6999999999 9 999999999999999999985
No 476
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=77.88 E-value=1.7 Score=31.28 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCC-CHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 45 AKL-SASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 45 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
..+ |..+||+.+| + +...+++-|+.|...|+++..
T Consensus 33 ~~lPse~~La~~~~-v----Sr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEK-I----NPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEe
Confidence 567 9999999999 9 999999999999999999975
No 477
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=77.82 E-value=4.3 Score=29.00 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHh
Q 047000 27 QAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLAS 77 (231)
Q Consensus 27 ~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~ 77 (231)
..+-++.|+..|.+ +.|..|||+.+| + +..-+.|+-+.|-.
T Consensus 61 aLs~R~eV~klL~~-----G~syreIA~~~g-~----S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ-----GYTYATIEQESG-A----STATISRVKRSLQW 101 (119)
T ss_dssp HHHHHHHHHHHHHH-----TCCHHHHHHHHC-C----CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHC-C----CHHHHHHHHHHHhc
Confidence 45567899999988 499999999999 9 99999999887743
No 478
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=77.73 E-value=1.7 Score=35.36 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCceEEEccCChhHHHHHHHHH-------CCC-----CeEEEeec
Q 047000 173 HIQQLVDVGGCLGNTLKAITSK-------YPH-----IKGINFDL 205 (231)
Q Consensus 173 ~~~~vvDVGGG~G~~~~~l~~~-------~P~-----l~~~v~Dl 205 (231)
+..+|++||.|+|..+..+++. +|+ ++++.+|.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 4579999999999988887765 784 67888886
No 479
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=77.42 E-value=1.4 Score=30.60 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCC-CHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 45 AKL-SASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 45 ~~~-t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+.+ |..+||+.++ + +...+++-|+.|...|+++..
T Consensus 41 ~~lps~~eLa~~lg-V----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 41 EGLLVASKIADRVG-I----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEEECHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCCEEEE
Confidence 456 9999999999 9 999999999999999999975
No 480
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=76.93 E-value=2.5 Score=31.75 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=41.4
Q ss_pred HHhhChHHHHHhcCCCCCCCHHHHHHhCCCCC---CCCCcchHHHHHHHHHhCCccccc
Q 047000 29 VIGLGVFEIIAKAGPGAKLSASEIAAQLPATK---NKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 29 a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~---~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
.-+.-|++.|...+ ++.|++||.+.+. -. ...+..-+.|.|+.|+..|++.+.
T Consensus 33 ~qR~~IL~~L~~~~--~h~sA~eI~~~l~-~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 33 KQREVLLKTLYHSD--THYTPESLYMEIK-QAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHHHHHSCC--SCBCHHHHHHHHH-HHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34667899998764 7999999988763 10 112778999999999999999985
No 481
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=76.74 E-value=1.6 Score=33.20 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
++|-++||..+| + .+..+.|+|..|...|+++.
T Consensus 164 ~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 164 KITRQEIGRIVG-C----SREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp ECCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEe
Confidence 689999999999 9 99999999999999999987
No 482
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=76.72 E-value=3.3 Score=26.58 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=39.5
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcc-hHHHHHHHHHhCCccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPM-MLDRMLRLLASHSAVECS 84 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~-~l~rlL~~L~~~g~l~~~ 84 (231)
+-.|++.|..+ ||.++-.||+.+| + ... -+.+-|..|...|++..+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LG-l----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALG-M----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTT-C----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhC-c----chhhhcCHHHHHHHHccCcCCC
Confidence 55689999987 5999999999999 8 544 499999999999999763
No 483
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=76.57 E-value=1.1 Score=38.72 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=43.9
Q ss_pred hhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccccccCCCCcCccccc
Q 047000 31 GLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECSIDDADDSQRLYGL 97 (231)
Q Consensus 31 ~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~~~~y~~ 97 (231)
+..|++.|.. +|+++++|+.++| + +...+...|-.|.-.|+++.. . ++.|++
T Consensus 330 ~~~vl~~l~~----~~~~~D~l~~~~g-l----~~~~v~~~L~~LEl~G~v~~~---~---Gg~~~~ 381 (382)
T 3maj_A 330 RTRILALLGP----SPVGIDDLIRLSG-I----SPAVVRTILLELELAGRLERH---G---GSLVSL 381 (382)
T ss_dssp HHHHHHHCCS----SCEEHHHHHHHHC-C----CHHHHHHHHHHHHHTTCCEEC---T---TSEEEC
T ss_pred HHHHHHhhCC----CCCCHHHHHHHHC-c----CHHHHHHHHHHHHhCCcEEeC---C---CceEec
Confidence 3457888875 6999999999999 9 999999999999999999984 2 567765
No 484
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=76.34 E-value=3 Score=29.22 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHHHhhChHHHHHhcCCCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHh
Q 047000 27 QAVIGLGVFEIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLAS 77 (231)
Q Consensus 27 ~~a~~lglfd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~ 77 (231)
..+-++.|+..|.+ +.|+.+|++.+| + +..-+.|+-+.|..
T Consensus 44 alaqR~~Ia~lL~~-----G~SyreIa~~tG-~----StaTIsRv~r~L~~ 84 (107)
T 3frw_A 44 SLSQRFEVAKMLTD-----KRTYLDISEKTG-A----STATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHHHHHHHHT-----TCCHHHHHHHHC-C----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHC-c----cHHHHHHHHHHHHc
Confidence 35678899999987 499999999999 9 98899998888754
No 485
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=76.18 E-value=2.3 Score=35.48 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccc-cc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVE-CS 84 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~-~~ 84 (231)
+++|.+|||++++ + ++..++|.|..|...|+++ +.
T Consensus 20 ~~~~~~ela~~l~-v----S~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELG-I----YRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTT-C----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-c----CHHHHHHHHHHHHHCCcEEEEe
Confidence 5899999999999 9 9999999999999999998 53
No 486
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=76.13 E-value=1.9 Score=33.45 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=31.9
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
++|-++||..+| + .+..+.|+|..|...|+++.
T Consensus 175 ~~t~~~iA~~lg-~----sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 175 PLGTQDIMARTS-S----SRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCcEEe
Confidence 689999999999 9 99999999999999999997
No 487
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=75.94 E-value=1.8 Score=33.23 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=32.0
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
++|-++||..+| + .+..+.|+|..|...|+++.
T Consensus 169 ~~t~~~lA~~lg-~----sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 169 KITHETIANHLG-S----HREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp CCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEe
Confidence 789999999999 9 99999999999999999987
No 488
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=75.72 E-value=2 Score=31.02 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCCCC-CHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 43 PGAKL-SASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 43 ~~~~~-t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+|..+ |..+||+.+| + +...+++-++.|...|+++..
T Consensus 34 pG~~LPser~La~~~g-V----Sr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 34 EGEKILSIREFASRIG-V----NPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp TTCEECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCccHHHHHHHHC-C----CHHHHHHHHHHHHHCCcEEEE
Confidence 33667 7889999999 9 999999999999999999975
No 489
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=75.60 E-value=1.6 Score=33.20 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
++|-++||..+| + .+..+.|+|..|...|+++.
T Consensus 146 ~~t~~~lA~~lg-~----sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 146 KATHDELAAAVG-S----VRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp ECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEe
Confidence 589999999999 9 99999999999999999997
No 490
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=75.57 E-value=4.9 Score=32.37 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=32.7
Q ss_pred HHHHHhCCCCCCCceEEEccCChhHHHHHHHHHCCCCeEEEeechH
Q 047000 162 QKILEAYKGFEHIQQLVDVGGCLGNTLKAITSKYPHIKGINFDLPH 207 (231)
Q Consensus 162 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~ 207 (231)
..+++.+. .....|+|..||+|+.+.+..+. +-+++.+|+.+
T Consensus 203 ~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~ 244 (260)
T 1g60_A 203 ERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNA 244 (260)
T ss_dssp HHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCH
T ss_pred HHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCH
Confidence 34445443 34679999999999999999887 57899999864
No 491
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=75.49 E-value=2 Score=33.19 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCcccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVEC 83 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~ 83 (231)
-++|-++||..+| + .+..+.|+|..|...|+++.
T Consensus 177 ~~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~ 210 (227)
T 3dkw_A 177 IPVAKQLVAGHLS-I----QPETFSRIMHRLGDEGIIHL 210 (227)
T ss_dssp CCSCTHHHHHHTT-S----CHHHHHHHHHHHHHHTSEEE
T ss_pred ecCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCcEEe
Confidence 4688999999999 9 99999999999999999997
No 492
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=75.47 E-value=2.2 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=32.7
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
-++|-++||..+| + .++.+.|+|..|...|+++..
T Consensus 179 ~~~t~~~lA~~lg-~----sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 179 IYLSREELATLSN-M----TVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCCHHHHHHHTT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cccCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEeeC
Confidence 3789999999999 9 999999999999999999973
No 493
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=75.30 E-value=2.3 Score=33.92 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 43 PGAKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 43 ~~~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
||..++..+||+.+| + +...+++-|+.|...|+++..
T Consensus 46 pG~~L~e~~La~~lg-V----Sr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 46 SGTALRQQELATLFG-V----SRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp TTCBCCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCeeCHHHHHHHHC-C----CHHHHHHHHHHHHHCCCEEEe
Confidence 447899999999999 9 999999999999999999985
No 494
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=74.61 E-value=2.2 Score=33.63 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=32.3
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++|-++||..+| + .++.+.|+|..|...|+++..
T Consensus 193 ~lt~~~lA~~lG-~----sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIG-S----TRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CCCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHC-C----cHHHHHHHHHHHHHCCCEEEc
Confidence 789999999999 9 999999999999999999973
No 495
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=74.61 E-value=1.6 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++|-++||..+| + .++.+.|+|..|...|+++..
T Consensus 139 ~~t~~~lA~~lg-~----sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 139 TVSHEEIADATA-S----IRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp ECCHHHHHHTTT-S----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCCEEec
Confidence 589999999999 9 999999999999999999973
No 496
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=74.43 E-value=1.9 Score=33.62 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=28.6
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSA 80 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~ 80 (231)
|+|-++||..+| + .+..+.|+|..|...|+
T Consensus 178 ~~t~~~iA~~lg-~----sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 178 PYDKMLIAGRLG-M----KPESLSRAFSRLKAAGV 207 (237)
T ss_dssp CSCTHHHHHHTT-C----CHHHHHHHHHHHGGGTE
T ss_pred cCCHHHHHHHhC-C----CHHHHHHHHHHHHHCCe
Confidence 678999999999 9 99999999999999996
No 497
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=74.41 E-value=2.3 Score=33.23 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=32.0
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++|-++||..+| + .++.+.|+|..|...|+++..
T Consensus 186 ~~t~~~lA~~lG-~----sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 186 KVKMDDLARCLD-D----TRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp ECCHHHHHHHHT-S----CHHHHHHHHHHHHHTTSCEEE
T ss_pred cCCHHHHHHHhC-C----ChhHHHHHHHHHHHCCCEEec
Confidence 589999999999 9 999999999999999999873
No 498
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=74.34 E-value=2 Score=32.67 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=32.2
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++|-++||..+| + .+..+.|+|..|...|+++..
T Consensus 167 ~~t~~~iA~~lg-~----sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVG-C----SRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp ECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhC-C----cHHHHHHHHHHHHHCCcEEeC
Confidence 689999999999 9 999999999999999999973
No 499
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=74.08 E-value=2 Score=33.18 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=32.0
Q ss_pred CCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 46 KLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 46 ~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
++|-++||..+| + .++.+.|+|..|...|+++..
T Consensus 187 ~lt~~~lA~~lg-~----sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 187 RVSRQELARLVG-C----SREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp ECCHHHHHHHHT-C----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhC-C----cHHHHHHHHHHHHHCCCEEEC
Confidence 579999999999 9 999999999999999999973
No 500
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=73.80 E-value=2.1 Score=28.11 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhCCCCCCCCCcchHHHHHHHHHhCCccccc
Q 047000 45 AKLSASEIAAQLPATKNKDAPMMLDRMLRLLASHSAVECS 84 (231)
Q Consensus 45 ~~~t~~eLA~~~g~~~~~~~~~~l~rlL~~L~~~g~l~~~ 84 (231)
+.+++.++|+.++ +. ..+++..++.+|.++|++++.
T Consensus 29 ~~i~l~~aa~~L~-v~---~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 29 GVLDLKLAADTLA-VR---QKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp TEEEHHHHHHHTT-TC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred CcCcHHHHHHHhC-Cc---cceehhhHHHHHhHhcceeec
Confidence 6899999999999 62 468999999999999999984
Done!