Your job contains 1 sequence.
>047004
MGSLPGFKSMLEVEDDWYVTGNTSLNNHQDITFPPNLGDPTTDNLLLNAVDSSSSCSPSS
SVFNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLGEMGFLDTQATHALNRGNGG
ILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDENNGNSLFLNRS
KLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNSQLLCGIESDKGKKELT
EDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQ
KGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIN
DLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPARVEVRVRE
GRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHP
EQIKAVLLDSAGFHGMM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047004
(497 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2090847 - symbol:ICE1 "AT3G26744" species:3702... 869 3.9e-89 2
UNIPROTKB|Q2R3F6 - symbol:Os11g0523700 "Helix-loop-helix ... 814 4.1e-81 1
TAIR|locus:2155725 - symbol:bHLH093 "AT5G65640" species:3... 354 2.3e-32 1
TAIR|locus:2142419 - symbol:AT5G10570 "AT5G10570" species... 236 1.2e-30 2
UNIPROTKB|Q8H8E4 - symbol:OJ1006F06.1 "Putative bHLH tran... 332 4.9e-30 1
UNIPROTKB|Q336V8 - symbol:Os10g0544200 "Os10g0544200 prot... 331 6.2e-30 1
TAIR|locus:2039445 - symbol:AMS "AT2G16910" species:3702 ... 283 3.2e-22 1
UNIPROTKB|Q6YUS3 - symbol:OSJNBb0088N06.15 "BHLH protein-... 201 1.6e-14 2
UNIPROTKB|Q84LF9 - symbol:RERJ1 "Transcription Factor" sp... 177 7.2e-13 2
TAIR|locus:2046198 - symbol:FRU "AT2G28160" species:3702 ... 191 1.5e-12 1
TAIR|locus:2178555 - symbol:MYC3 "AT5G46760" species:3702... 192 2.3e-12 2
TAIR|locus:2141055 - symbol:MYC4 "AT4G17880" species:3702... 190 3.9e-12 2
TAIR|locus:2035237 - symbol:AT1G01260 "AT1G01260" species... 186 3.0e-11 1
TAIR|locus:2035609 - symbol:MYC2 "AT1G32640" species:3702... 185 4.3e-11 1
UNIPROTKB|Q5Z988 - symbol:P0548E04.5 "Os06g0724800 protei... 157 1.3e-10 1
TAIR|locus:2123954 - symbol:AT4G29930 "AT4G29930" species... 167 1.7e-10 2
UNIPROTKB|Q58GE3 - symbol:UDT1 "Undeveloped tapetum 1" sp... 164 2.4e-10 1
UNIPROTKB|Q75GI1 - symbol:OSJNBa0013A09.16 "Putative tran... 173 2.9e-10 1
TAIR|locus:2039094 - symbol:AIB "AT2G46510" species:3702 ... 180 4.9e-10 2
TAIR|locus:2134583 - symbol:AT4G00870 "AT4G00870" species... 169 6.7e-10 2
TAIR|locus:2118524 - symbol:TT8 "AT4G09820" species:3702 ... 162 1.3e-09 2
TAIR|locus:2026629 - symbol:EGL3 "AT1G63650" species:3702... 163 1.1e-08 1
UNIPROTKB|Q336P5 - symbol:Os10g0575000 "Os10g0575000 prot... 168 1.3e-08 2
TAIR|locus:2130619 - symbol:AT4G16430 "AT4G16430" species... 160 1.5e-08 1
UNIPROTKB|Q6ZBI4 - symbol:P0623F08.11 "Phaseolin G-box bi... 153 1.9e-08 1
TAIR|locus:2020003 - symbol:AT1G10610 "AT1G10610" species... 158 2.2e-08 1
UNIPROTKB|Q2QLR0 - symbol:LOC_Os12g43620 "Helix-loop-heli... 158 2.2e-08 2
UNIPROTKB|Q84R79 - symbol:OSJNBb0113I20.1 "Putative ammon... 153 3.2e-08 1
TAIR|locus:2062225 - symbol:AT2G22750 "AT2G22750" species... 153 3.3e-08 1
TAIR|locus:2042486 - symbol:AT2G31220 "AT2G31220" species... 147 3.4e-08 3
TAIR|locus:2141206 - symbol:DYT1 "AT4G21330" species:3702... 144 3.5e-08 1
UNIPROTKB|Q53L62 - symbol:LOC_Os11g15210 "Helix-loop-heli... 156 4.0e-08 1
UNIPROTKB|Q7XKP5 - symbol:OSJNBb0013O03.11 "OSJNBb0013O03... 151 4.1e-08 2
UNIPROTKB|Q657A4 - symbol:P0022F12.30 "Regulatory protein... 152 7.1e-08 1
TAIR|locus:2172932 - symbol:NIG1 "AT5G46830" species:3702... 153 1.0e-07 1
UNIPROTKB|Q84R60 - symbol:OSJNBb0113I20.8 "Putative ammon... 150 1.1e-07 1
UNIPROTKB|Q10LR1 - symbol:Os03g0338400 "BHLH transcriptio... 94 1.2e-07 2
TAIR|locus:504954829 - symbol:GL3 "AT5G41315" species:370... 149 1.4e-07 2
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 138 3.1e-07 1
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 146 3.4e-07 1
TAIR|locus:2137574 - symbol:AT4G37850 "AT4G37850" species... 143 5.5e-07 1
TAIR|locus:2154197 - symbol:SPCH "AT5G53210" species:3702... 138 7.4e-07 2
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 140 9.4e-07 1
TAIR|locus:2062235 - symbol:NAI1 "AT2G22770" species:3702... 140 1.1e-06 1
TAIR|locus:2062230 - symbol:AT2G22760 "AT2G22760" species... 139 1.2e-06 1
TAIR|locus:2828302 - symbol:AT2G40435 species:3702 "Arabi... 96 1.6e-06 2
UNIPROTKB|Q6ZJC8 - symbol:OJ1666_A04.16 "Os08g0477900 pro... 129 2.3e-06 2
UNIPROTKB|Q7XPS7 - symbol:OSJNBa0065O17.4 "OSJNBa0065O17.... 141 2.5e-06 1
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 139 3.7e-06 1
UNIPROTKB|Q948Y2 - symbol:Plw-OSB2 "R-type basic helix-lo... 137 4.9e-06 1
UNIPROTKB|Q653A4 - symbol:OSJNBa0043B22.14 "Basic helix-l... 132 4.9e-06 2
UNIPROTKB|Q69IU0 - symbol:P0498F03.15 "Putative MYC-relat... 131 8.7e-06 1
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 132 8.7e-06 1
TAIR|locus:2144791 - symbol:HEC3 "AT5G09750" species:3702... 126 1.2e-05 2
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 121 1.2e-05 3
UNIPROTKB|Q5WMQ1 - symbol:OSJNBa0053E01.1 "Putative uncha... 81 1.4e-05 2
TAIR|locus:504956068 - symbol:AT2G31215 "AT2G31215" speci... 110 1.5e-05 1
TAIR|locus:2205455 - symbol:BIM2 "AT1G69010" species:3702... 119 1.7e-05 2
TAIR|locus:2093746 - symbol:FMA "AT3G24140" species:3702 ... 131 1.9e-05 1
UNIPROTKB|Q6ETQ5 - symbol:P0613F08.25 "Basic helix-loop-h... 131 1.9e-05 1
UNIPROTKB|Q7X8R0 - symbol:OSJNBa0083N12.3 "OSJNBa0083N12.... 131 2.3e-05 1
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 127 3.0e-05 1
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 129 3.3e-05 1
TAIR|locus:2009537 - symbol:AT1G22490 "AT1G22490" species... 126 3.8e-05 1
TAIR|locus:2116977 - symbol:AT4G01460 "AT4G01460" species... 125 5.3e-05 1
TAIR|locus:2078411 - symbol:AT3G56220 species:3702 "Arabi... 80 5.5e-05 2
TAIR|locus:2042556 - symbol:AT2G31210 "AT2G31210" species... 127 5.6e-05 1
TAIR|locus:2053733 - symbol:PIF4 "AT2G43010" species:3702... 127 5.7e-05 1
TAIR|locus:504954900 - symbol:AT5G43175 "AT5G43175" speci... 121 5.7e-05 1
UNIPROTKB|Q6ESL3 - symbol:OJ1294_G06.8 "DNA binding prote... 120 6.2e-05 2
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 126 6.5e-05 1
TAIR|locus:2199221 - symbol:RSL4 "AT1G27740" species:3702... 122 7.0e-05 1
TAIR|locus:2038510 - symbol:AT1G06170 "AT1G06170" species... 126 7.1e-05 1
UNIPROTKB|Q8LSP3 - symbol:OJ1203D03.3 "Helix-loop-helix D... 124 0.00013 1
UNIPROTKB|Q8S0C6 - symbol:B1112D09.6 "Uncharacterized pro... 124 0.00013 1
TAIR|locus:2085964 - symbol:BHLH32 "AT3G25710" species:37... 122 0.00014 1
TAIR|locus:2065086 - symbol:AT2G40200 "AT2G40200" species... 117 0.00025 1
TAIR|locus:2012393 - symbol:AT1G68810 "AT1G68810" species... 120 0.00026 1
UNIPROTKB|Q5SMX4 - symbol:P0498B01.36 "cDNA clone:J033115... 121 0.00027 1
UNIPROTKB|Q6ZBQ2 - symbol:P0605H02.26 "BHLH protein famil... 118 0.00029 2
TAIR|locus:2061634 - symbol:PIL5 "phytochrome interacting... 121 0.00031 1
TAIR|locus:2117788 - symbol:AT4G28800 species:3702 "Arabi... 120 0.00035 1
TAIR|locus:2117773 - symbol:AT4G28790 species:3702 "Arabi... 119 0.00040 1
UNIPROTKB|Q5KQG3 - symbol:OSJNBb0086G17.12 "Putative unch... 113 0.00052 1
TAIR|locus:2178560 - symbol:bHLH071 "AT5G46690" species:3... 109 0.00057 2
UNIPROTKB|Q6ZGS3 - symbol:OJ1148_D05.9 "Putative basic-he... 117 0.00060 2
ASPGD|ASPL0000062836 - symbol:AN1114 species:162425 "Emer... 117 0.00062 1
UNIPROTKB|Q6ZA99 - symbol:P0431A03.9 "Os08g0432800 protei... 116 0.00064 1
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 119 0.00065 1
UNIPROTKB|Q5JNS0 - symbol:P0706B05.43 "Os01g0293100 prote... 103 0.00066 2
UNIPROTKB|Q5SMX2 - symbol:P0498B01.25 "Basic helix-loop-h... 117 0.00067 1
TAIR|locus:2152551 - symbol:AT5G48560 "AT5G48560" species... 118 0.00070 1
UNIPROTKB|Q9FTQ1 - symbol:P0665D10.21 "DNA binding protei... 105 0.00074 2
UNIPROTKB|Q69MD0 - symbol:OSJNBb0019B14.23 "BHLH-like pro... 111 0.00075 1
UNIPROTKB|Q7XLY9 - symbol:OSJNBa0086O06.20 "OSJNBa0086O06... 108 0.00082 2
TAIR|locus:2163163 - symbol:PIF7 "AT5G61270" species:3702... 118 0.00088 2
UNIPROTKB|Q6YTU1 - symbol:P0419H09.4 "cDNA clone:002-131-... 115 0.00090 1
TAIR|locus:2172209 - symbol:AT5G62610 "AT5G62610" species... 113 0.00091 1
>TAIR|locus:2090847 [details] [associations]
symbol:ICE1 "AT3G26744" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA;TAS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IDA] [GO:0050826 "response to freezing"
evidence=RCA;IMP] [GO:0010440 "stomatal lineage progression"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0048522 "positive regulation of
cellular process" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0050826 EMBL:AB016889 GO:GO:0010440
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB026648 EMBL:AY195621
EMBL:AY079016 EMBL:BT020379 EMBL:AK228443 IPI:IPI00518051
IPI:IPI00656676 RefSeq:NP_001030774.1 RefSeq:NP_001030776.2
RefSeq:NP_189309.2 UniGene:At.25302 ProteinModelPortal:Q9LSE2
SMR:Q9LSE2 STRING:Q9LSE2 PaxDb:Q9LSE2 PRIDE:Q9LSE2
EnsemblPlants:AT3G26744.1 EnsemblPlants:AT3G26744.2
EnsemblPlants:AT3G26744.4 GeneID:822287 KEGG:ath:AT3G26744
TAIR:At3g26744 eggNOG:NOG236974 HOGENOM:HOG000085036
InParanoid:Q9LSE2 OMA:NSESSGM PhylomeDB:Q9LSE2
ProtClustDB:CLSN2690572 Genevestigator:Q9LSE2 GermOnline:AT3G26744
Uniprot:Q9LSE2
Length = 494
Score = 869 (311.0 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 189/330 (57%), Positives = 223/330 (67%)
Query: 168 DENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNSQLL 227
+ NN N++ LE F S A RA + K L AS G T Q
Sbjct: 180 ESNNNNTMLCGGFTAPLELEGFGSP-ANGGFVGNRAKVLKPLEVL-ASSGAQPTL-FQKR 236
Query: 228 CGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGS 287
+ G K ++ R+ S D+++ ++ SGLNY+SD+ E+ K E + GG
Sbjct: 237 AAMRQSSGSKMGNSESSGMRRFSDDGDMDETGIEVSGLNYESDEINESGKAAESVQIGG- 295
Query: 288 ISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD 347
GG KGKKKG+PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD
Sbjct: 296 ---------GG--KGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD 344
Query: 348 AIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSP 407
AI+YLKELLQRINDLHNELESTPPGS S+SF+PLTPTP L R+K+ELCPSSLPSP
Sbjct: 345 AIDYLKELLQRINDLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSP 404
Query: 408 NGQPXXXXXXXXXXXXXNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVF 467
GQ NIHMFC RRPGLLL+TM+ALDNLGLD+QQAVISCFNGFA+DVF
Sbjct: 405 KGQQARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVF 464
Query: 468 RAEQCKEGQDVHPEQIKAVLLDSAGFHGMM 497
RAEQC+EGQ++ P+QIKAVL D+AG+ GM+
Sbjct: 465 RAEQCQEGQEILPDQIKAVLFDTAGYAGMI 494
Score = 190 (71.9 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 81/274 (29%), Positives = 118/274 (43%)
Query: 7 FKSMLEVEDDWYVTGNTSLNNHQDITFPPNL----GDP--TTDNLLL-NAVDXXXXXXXX 59
FK MLE DW+ + + Q + P+ G P DNLLL +++D
Sbjct: 39 FKPMLE--GDWFSSNQPHPQDLQMLQNQPDFRYFGGFPFNPNDNLLLQHSIDSSSSCSPS 96
Query: 60 XXVFNNFDASQVHYFLPQKXXXXXXXXXXXXXXXLEHGFDLG-EMGFLDTQATHA-LNRG 117
+ D SQ + FL ++ F+ G E GFL+ HA ++ G
Sbjct: 97 QAF--SLDPSQQNQFLSTNNNKGCLLNVPSSANPFDNAFEFGSESGFLNQ--IHAPISMG 152
Query: 118 NGGILN-GFNDLSA-NNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDENNGNSL 175
G + G DLS+ + ++A +L + P+ N T+ G ++ GF
Sbjct: 153 FGSLTQLGNRDLSSVPDFLSARSLLA-PESNNNNTMLC--GGFTAPLELEGFGSPANGGF 209
Query: 176 FLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLG---GNEASLGV--LGTQNSQLLCGI 230
NR+K+L+PLE S+GAQPTLFQKRAA+R++ G GN S G+ GI
Sbjct: 210 VGNRAKVLKPLEVLASSGAQPTLFQKRAAMRQSSGSKMGNSESSGMRRFSDDGDMDETGI 269
Query: 231 ESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSG 264
E E E NE + E V + G G
Sbjct: 270 EVSGLNYESDEINESGKAA------ESVQIGGGG 297
Score = 40 (19.1 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 166 GFDENNGNSLFLN 178
G D NNG ++LN
Sbjct: 2 GLDGNNGGGVWLN 14
>UNIPROTKB|Q2R3F6 [details] [associations]
symbol:Os11g0523700 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0050826
GO:GO:0010440 Gene3D:4.10.280.10 SUPFAM:SSF47459
RefSeq:NP_001067987.2 UniGene:Os.56356
EnsemblPlants:LOC_Os11g32100.1 GeneID:4350609 KEGG:osa:4350609
OMA:DGKDSNA Uniprot:Q2R3F6
Length = 524
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 169/251 (67%), Positives = 197/251 (78%)
Query: 251 ISDDLED--VSVDGSG-LNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGL 307
+ DD +D +S+D SG LNYDS+D E+ G SNA ST+TG D KGKKKG+
Sbjct: 280 VLDDGDDDGLSIDASGGLNYDSEDARGG---EDSGAK--KESNANSTVTG-DGKGKKKGM 333
Query: 308 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 367
PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ+INDL NELE
Sbjct: 334 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNELE 393
Query: 368 STPPGSALTPS-TSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPXXXXXXXXXXXXXNI 426
S+P S+L P+ TSF+PLTPT P L SRIK+E+CPS+LPSP GQ NI
Sbjct: 394 SSPATSSLPPTPTSFHPLTPTLPTLPSRIKEEICPSALPSPTGQQPRVEVRLREGRAVNI 453
Query: 427 HMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAV 486
HMFC+RRPGLLLS MRA++ LGLD+QQAVISCFNGF +D+F+AEQCK+G + PE+IKAV
Sbjct: 454 HMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTLDIFKAEQCKDGPGLLPEEIKAV 513
Query: 487 LLDSAGFHGMM 497
L+ SAGFH M+
Sbjct: 514 LMQSAGFHTMI 524
Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 83/304 (27%), Positives = 125/304 (41%)
Query: 111 THALNRGNGGILNGFNDL-SANNQM-NATNLCSDPQF--GTNRTLQFPENGSSSFTGFRG 166
T L GN G L F +A +QM L F G T + S++
Sbjct: 149 TALLPVGNAGFLGTFGGFGTAASQMPEFGGLAGFDMFDAGAVNTGGSSSSSSAAAAAASA 208
Query: 167 FDENNGNSLFLNRSK--LLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNS 224
+ + F R K +LRPL+ P GAQPTLFQKRA LR+N G ++ +
Sbjct: 209 SAHVSNTAPFSGRGKAAVLRPLDIVPPVGAQPTLFQKRA-LRRNAGEDDDD------KKR 261
Query: 225 QLLCGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSG-LNYDSDDFLENNKVEEMGK 283
+ G G L+ D L DD + +S+D SG LNYDS+D E+ G
Sbjct: 262 KAAAGA----GAGALSADGADM-VLDDGDD-DGLSIDASGGLNYDSEDARGG---EDSGA 312
Query: 284 NGGSISNAISTITG-GDQKGKK-KGLPAKNLMAERRRRKKLNDRLYMLR-SVVPKISKM- 339
S +N+ T G G +KG K L A+ ++ + R + + S + + S +
Sbjct: 313 KKESNANSTVTGDGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILG 372
Query: 340 DRASILGDAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPA-LHSRIKDE 398
D L + ++ + +L + P ++ P T P PT P+ + I
Sbjct: 373 DAIEYLKELLQKINDLQNELESSPATSSLPPTPTSFHPLT---PTLPTLPSRIKEEICPS 429
Query: 399 LCPS 402
PS
Sbjct: 430 ALPS 433
>TAIR|locus:2155725 [details] [associations]
symbol:bHLH093 "AT5G65640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0007275
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB026639 HOGENOM:HOG000029066 EMBL:AF488621 EMBL:BT025665
EMBL:AK229018 EMBL:AY085134 IPI:IPI00533579 IPI:IPI00785991
RefSeq:NP_001078801.1 RefSeq:NP_569014.1 UniGene:At.28897
ProteinModelPortal:Q9LSL1 SMR:Q9LSL1 EnsemblPlants:AT5G65640.1
GeneID:836690 KEGG:ath:AT5G65640 TAIR:At5g65640 eggNOG:NOG245311
InParanoid:Q9LSL1 OMA:PLMESDQ PhylomeDB:Q9LSL1
ProtClustDB:CLSN2686406 Genevestigator:Q9LSL1 Uniprot:Q9LSL1
Length = 351
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 87/203 (42%), Positives = 121/203 (59%)
Query: 297 GGD---QKGKK-KGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYL 352
GG+ +K KK +G P+KNLMAERRRRK+LNDRL MLRS+VPKISKMDR SILGDAI+Y+
Sbjct: 161 GGETNKKKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYM 220
Query: 353 KELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPX 412
KELL +IN L +E + L S + + HS++ +L + P +
Sbjct: 221 KELLDKINKLQDEEQE------LGNSNNSH---------HSKLFGDLKDLNANEPLVRNS 265
Query: 413 XXXXXXXXXXXXNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQC 472
+ + CS +PGLLLST+ L+ LGL+I+Q VISCF+ F++ +E
Sbjct: 266 PKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCVISCFSDFSLQASCSEGA 325
Query: 473 KEGQDVHPEQIKAVLLDSAGFHG 495
++ + E IK L +AG+ G
Sbjct: 326 EQRDFITSEDIKQALFRNAGYGG 348
>TAIR|locus:2142419 [details] [associations]
symbol:AT5G10570 "AT5G10570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL353995 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488594 IPI:IPI00529696 PIR:T49982
RefSeq:NP_196619.1 UniGene:At.32362 ProteinModelPortal:Q9LXA9
SMR:Q9LXA9 EnsemblPlants:AT5G10570.1 GeneID:830922
KEGG:ath:AT5G10570 TAIR:At5g10570 eggNOG:NOG310833
HOGENOM:HOG000029066 InParanoid:Q9LXA9 OMA:SSAFDYP PhylomeDB:Q9LXA9
ProtClustDB:CLSN2914918 Genevestigator:Q9LXA9 Uniprot:Q9LXA9
Length = 315
Score = 236 (88.1 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 49/82 (59%), Positives = 62/82 (75%)
Query: 296 TGGDQKGKK-KGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKE 354
T + KK +G P+KNLMAERRRRK+LNDRL +LRS+VPKI+KMDR SILGDAI+Y+KE
Sbjct: 136 TNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKE 195
Query: 355 LLQRINDLHNELESTPPGSALT 376
LL +IN L + + S L+
Sbjct: 196 LLDKINKLQEDEQELGSNSHLS 217
Score = 129 (50.5 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 425 NIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIK 484
+I + C +PGL++ST+ L+ LGL+I+Q VISCF+ F++ E ++ V E K
Sbjct: 242 HIDICCPTKPGLVVSTVSTLETLGLEIEQCVISCFSDFSLQASCFEVGEQRYMVTSEATK 301
Query: 485 AVLLDSAGFHG 495
L+ +AG+ G
Sbjct: 302 QALIRNAGYGG 312
Score = 39 (18.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 255 LEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTIT 296
++ S+ G ++Y + + NK++E + GS S+ + IT
Sbjct: 180 MDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSHLSTLIT 221
>UNIPROTKB|Q8H8E4 [details] [associations]
symbol:OJ1006F06.1 "Putative bHLH transcription protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000029066 EMBL:AC099399 ProteinModelPortal:Q8H8E4
STRING:Q8H8E4 Gramene:Q8H8E4 Uniprot:Q8H8E4
Length = 430
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 85/205 (41%), Positives = 113/205 (55%)
Query: 292 ISTITGG-DQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIE 350
I + GG + K G P+KNLMAERRRRK+LNDRL MLRS+VPKISKMDR SILGD I+
Sbjct: 163 IRGVGGGVHPRSKLHGTPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTID 222
Query: 351 YLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQ 410
Y+KEL +RI L E+ G +TP L + +KD ++
Sbjct: 223 YVKELTERIKTLEEEI-----G-----------VTPEELDLLNTMKDSSSGNNNEMLVRN 266
Query: 411 PXXXXXXXXXXXXXNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAE 470
I + C PG+LLST+ AL+ LGL+I+Q V+SCF+ F M +
Sbjct: 267 STKFDVENRGSGNTRIEICCPANPGVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCLQ 326
Query: 471 QCKEGQDVHPEQIKAVLLDSAGFHG 495
+ + Q V ++IK L SAG+ G
Sbjct: 327 EDGKRQVVSTDEIKQTLFRSAGYGG 351
>UNIPROTKB|Q336V8 [details] [associations]
symbol:Os10g0544200 "Os10g0544200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000086 EMBL:AP008216
EMBL:CM000147 Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG245311
EMBL:AK063669 RefSeq:NP_001065200.1 UniGene:Os.46563
EnsemblPlants:LOC_Os10g39750.1 GeneID:4349271 KEGG:osa:4349271
ProtClustDB:CLSN2693493 Uniprot:Q336V8
Length = 380
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 87/210 (41%), Positives = 115/210 (54%)
Query: 285 GGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASI 344
GG A +++ + + G P+KNLMAERRRRK+LNDRL MLRSVVP+ISKMDR SI
Sbjct: 172 GGG-GGAAASVRPRSCRPPQPGAPSKNLMAERRRRKRLNDRLSMLRSVVPRISKMDRTSI 230
Query: 345 LGDAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSL 404
LGD I Y+KEL+ RI +L E + S+ T + S L P S +E P
Sbjct: 231 LGDTIGYVKELMDRIKNLQVEAATGDSSSSSTENLSMLKLNTLKPPPSSSSGEET-PLIR 289
Query: 405 PSPNGQPXXXXXXXXXXXXXNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAM 464
S + I M C+ P LL ST+ AL+ LG++I+Q VISCF+ FAM
Sbjct: 290 NSTRFE-----VERRENGSTRIEMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAM 344
Query: 465 DVFRAEQCKEGQDVHP-EQIKAVLLDSAGF 493
+ K+ + E+IK L SAG+
Sbjct: 345 QASCLQDDKKREMTRDTEEIKQTLFRSAGY 374
>TAIR|locus:2039445 [details] [associations]
symbol:AMS "AT2G16910" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] [GO:0048658 "tapetal
layer development" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC005167 EMBL:AF488565 IPI:IPI00529182 PIR:G84545
RefSeq:NP_179283.2 UniGene:At.48482 UniGene:At.70395
ProteinModelPortal:Q9ZVX2 SMR:Q9ZVX2 STRING:Q9ZVX2 PRIDE:Q9ZVX2
EnsemblPlants:AT2G16910.1 GeneID:816194 KEGG:ath:AT2G16910
TAIR:At2g16910 eggNOG:NOG313389 HOGENOM:HOG000033929
InParanoid:Q9ZVX2 OMA:PRTKSCE PhylomeDB:Q9ZVX2
ProtClustDB:CLSN2690121 ArrayExpress:Q9ZVX2 Genevestigator:Q9ZVX2
GO:GO:0048658 Uniprot:Q9ZVX2
Length = 571
Score = 283 (104.7 bits), Expect = 3.2e-22, P = 3.2e-22
Identities = 86/233 (36%), Positives = 120/233 (51%)
Query: 271 DFLENNKVEEMGKNGGSISNAISTITGGDQKGKK-KGLPAKNLMAERRRRKKLNDRLYML 329
D EN +V+ +G S+ I K K KG AKNLMAERRRRKKLNDRLY L
Sbjct: 278 DMNENGRVD----SGSDCSDQIDDEDDPKYKKKSGKGSQAKNLMAERRRRKKLNDRLYAL 333
Query: 330 RSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE--------STPP--GSAL--TP 377
RS+VP+I+K+DRASILGDAI Y+KEL +L +ELE S P G +L T
Sbjct: 334 RSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSETEDGSNRPQGGMSLNGTV 393
Query: 378 STSFYPLTPTPPALHSRIKD-ELCPSSLPSPNGQPXXXXXXXXXXXXXNIHMFCSRRPGL 436
T F+P + S +D +L S+ +P + + C +PG
Sbjct: 394 VTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVDVAQLDGREFF-VKVICEYKPGG 452
Query: 437 LLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLD 489
M ALD+LGL++ A + + +VF+ E+ + + V E ++ LL+
Sbjct: 453 FTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVEK-NDNEMVQAEHVRNSLLE 504
>UNIPROTKB|Q6YUS3 [details] [associations]
symbol:OSJNBb0088N06.15 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0048653
"anther development" evidence=IMP] [GO:0048654 "anther
morphogenesis" evidence=IMP] [GO:0048657 "tapetal cell
differentiation" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG313389
HOGENOM:HOG000033929 OMA:PRTKSCE EMBL:AP008208 EMBL:CM000139
GO:GO:0048657 EMBL:AP004078 EMBL:AP005851 RefSeq:NP_001045710.1
UniGene:Os.50000 EnsemblPlants:LOC_Os02g02820.1 GeneID:4328113
KEGG:osa:4328113 ProtClustDB:CLSN2692391 Uniprot:Q6YUS3
Length = 552
Score = 201 (75.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 46/93 (49%), Positives = 59/93 (63%)
Query: 278 VEEMGKNGGSISNAISTITGGDQKGKKKGLP---AKNLMAERRRRKKLNDRLYMLRSVVP 334
V E G G + GD +G+ G KNL AER+RRKKLN LY LRS+VP
Sbjct: 251 VAESGSEGRKLHGG-DPEDDGDGEGRSGGAKRQQCKNLEAERKRRKKLNGHLYKLRSLVP 309
Query: 335 KISKMDRASILGDAIEYLKELLQRINDLHNELE 367
I+KMDRASILGDAI+Y+ L +++ +L +ELE
Sbjct: 310 NITKMDRASILGDAIDYIVGLQKQVKELQDELE 342
Score = 58 (25.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 426 IHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKA 485
+ + +PG + M A++ LGL++ ++ + ++VFR V ++++
Sbjct: 430 VQVLWEHKPGGFVRLMDAMNALGLEVINVNVTTYKTLVLNVFRVMVRDSEVAVQADRVRD 489
Query: 486 VLLD 489
LL+
Sbjct: 490 SLLE 493
>UNIPROTKB|Q84LF9 [details] [associations]
symbol:RERJ1 "Transcription Factor" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P01106 EMBL:AB040744
ProteinModelPortal:Q84LF9 Gramene:Q84LF9 Genevestigator:Q84LF9
Uniprot:Q84LF9
Length = 310
Score = 177 (67.4 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 50/132 (37%), Positives = 71/132 (53%)
Query: 249 LSISDD--LEDVSVDGS-GLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKK 305
L DD E S DGS + + + + + +GG ++ + + GG G
Sbjct: 31 LPTQDDSNYESSSPDGSHSSSAPAPAAVGGDAAAAVAGSGGGMTTMM--MGGGGGGGDDA 88
Query: 306 GLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNE 365
G KN++ ER RR+KLN++LY LRSVVP I+KMD+ASI+ DAIEY++ L + E
Sbjct: 89 GGANKNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQMLRE 148
Query: 366 ---LESTPPGSA 374
LES SA
Sbjct: 149 VAALESAAAASA 160
Score = 56 (24.8 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 24/95 (25%), Positives = 36/95 (37%)
Query: 377 PSTSFYPLTPTPPALH-SRIKDELCPSSLPSPNGQPXXXXXXXXXXXXXNIHMFCSRRPG 435
PS+S AL S I D L ++ P+P + + + CS+R
Sbjct: 184 PSSSSERTKKVKRALSVSSISDALLAAAAPAPPVEIQELRVSEVGDRVLVVSVTCSKRRD 243
Query: 436 LLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAE 470
+ RAL+ L L + A I+ G M E
Sbjct: 244 AMARVCRALEELRLRVITANITSVAGCPMHTLFVE 278
>TAIR|locus:2046198 [details] [associations]
symbol:FRU "AT2G28160" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010039 "response to iron ion" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0034756 "regulation of iron ion
transport" evidence=IMP] [GO:0071281 "cellular response to iron
ion" evidence=IEP] [GO:0071369 "cellular response to ethylene
stimulus" evidence=IEP] [GO:0071732 "cellular response to nitric
oxide" evidence=IEP] [GO:0000041 "transition metal ion transport"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0071281 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC005851 GO:GO:0071732 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0071369 EMBL:AF488570 EMBL:BT026446 IPI:IPI00547189
PIR:E84681 RefSeq:NP_850114.1 UniGene:At.43510
ProteinModelPortal:Q0V7X4 SMR:Q0V7X4 IntAct:Q0V7X4 STRING:Q0V7X4
PaxDb:Q0V7X4 PRIDE:Q0V7X4 EnsemblPlants:AT2G28160.1 GeneID:817362
KEGG:ath:AT2G28160 TAIR:At2g28160 eggNOG:NOG236355
HOGENOM:HOG000006047 InParanoid:Q0V7X4 OMA:NLKLWIT PhylomeDB:Q0V7X4
ProtClustDB:CLSN2690963 Genevestigator:Q0V7X4 GO:GO:0034756
Uniprot:Q0V7X4
Length = 318
Score = 191 (72.3 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 44/116 (37%), Positives = 72/116 (62%)
Query: 253 DDLEDV--SVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAK 310
D+L D+ +V S ++D D + +E N G S+A +T G +K K ++
Sbjct: 74 DELPDLDSNVAESFRSFDGDSVRAGGEEDEEDYNDGDDSSATTTNNDGTRKTKTDR--SR 131
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNEL 366
L++ERRRR ++ D+LY LRS+VP I+KMD+ASI+GDA+ Y++EL + L +++
Sbjct: 132 TLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDI 187
>TAIR|locus:2178555 [details] [associations]
symbol:MYC3 "AT5G46760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045893 GO:GO:0006952 GO:GO:0009753 GO:GO:0003677
GO:GO:0009718 GO:GO:0003700 GO:GO:0006351 EMBL:AB016882
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251690 IPI:IPI00533290
RefSeq:NP_199488.1 UniGene:At.28315 ProteinModelPortal:Q9FIP9
SMR:Q9FIP9 DIP:DIP-58585N PaxDb:Q9FIP9 PRIDE:Q9FIP9
EnsemblPlants:AT5G46760.1 GeneID:834719 KEGG:ath:AT5G46760
TAIR:At5g46760 eggNOG:NOG295658 InParanoid:Q9FIP9 OMA:TASSIEM
PhylomeDB:Q9FIP9 ProtClustDB:CLSN2686023 Genevestigator:Q9FIP9
Uniprot:Q9FIP9
Length = 592
Score = 192 (72.6 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 74/274 (27%), Positives = 126/274 (45%)
Query: 99 DLGEMGFLDTQATHALNRGNGGILNGFNDLSANNQMNATN--LCSDPQFGTNR-TLQFPE 155
+LG + +Q++ +++ N L FN+ NN + A++ +P G N L E
Sbjct: 214 ELGSSEVI-SQSSDLMHKVNN--LFNFNNGGGNNGVEASSWGFNLNPDQGENDPALWISE 270
Query: 156 NGSSSFTG-FRGFDENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEA 214
++ R + NN NS + S + LE + + Q + K+L
Sbjct: 271 PTNTGIESPARVNNGNNSNSNSKSDSHQISKLEKNDISSVENQNRQSSCLVEKDLTFQG- 329
Query: 215 SLGVLGTQNSQLLCGIESDKGKKELTE-DNEKKRKLSISDDLEDVSVDGSGLNYDSDDFL 273
G+L + + CG ES K + +++ N + LS S + + D + ++
Sbjct: 330 --GLLKSNETLSFCGNESSKKRTSVSKGSNNDEGMLSFSTVVRSAANDSDHSDLEASVVK 387
Query: 274 ENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVV 333
E VE K + G+++ P ++ AER+RR+KLN R Y LR+VV
Sbjct: 388 EAIVVEPPEKKPRKRGRKPAN-------GREE--PLNHVEAERQRREKLNQRFYSLRAVV 438
Query: 334 PKISKMDRASILGDAIEYLKELLQRINDLHNELE 367
P +SKMD+AS+LGDAI Y+ EL ++ ++ E
Sbjct: 439 PNVSKMDKASLLGDAISYINELKSKLQQAESDKE 472
Score = 48 (22.0 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 426 IHMFCSRR--PGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQI 483
I + C ++ PG M AL L L++ A +S N + +A Q + +Q+
Sbjct: 525 IRVQCGKKDHPGARF--MEALKELDLEVNHASLSVVNDLMIQ--QATVKMGSQFFNHDQL 580
Query: 484 KAVLLDSAG 492
K L+ G
Sbjct: 581 KVALMTKVG 589
>TAIR|locus:2141055 [details] [associations]
symbol:MYC4 "AT4G17880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009718 "anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0045893 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006952 GO:GO:0003677 GO:GO:0009718
GO:GO:0003700 GO:GO:0006351 EMBL:AL161547 EMBL:AL021889
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 eggNOG:NOG295658
ProtClustDB:CLSN2686023 EMBL:AF251689 EMBL:AK221507 IPI:IPI00540927
PIR:T05074 RefSeq:NP_193522.1 UniGene:At.28316
ProteinModelPortal:O49687 SMR:O49687 EnsemblPlants:AT4G17880.1
GeneID:827511 KEGG:ath:AT4G17880 TAIR:At4g17880 InParanoid:O49687
OMA:SCERARQ PhylomeDB:O49687 Genevestigator:O49687 Uniprot:O49687
Length = 589
Score = 190 (71.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 70/255 (27%), Positives = 109/255 (42%)
Query: 241 EDNEKKRKLSISDDLEDVSVDGSGLNYDSDDF-LENNKVEEMGKNGGSISNAISTITGGD 299
ED+ K++ +S++ E + S L DS+ LE + +E N + G
Sbjct: 346 EDSSNKKRSPVSNNEEGMLSFTSVLPCDSNHSDLEASVAKEAESNRVVVEPEKKPRKRGR 405
Query: 300 QKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRI 359
+ + P ++ AER+RR+KLN R Y LR+VVP +SKMD+AS+LGDAI Y+ EL ++
Sbjct: 406 KPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKL 465
Query: 360 NDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPXXXXXXXX 419
++ E + S +KD C + S +
Sbjct: 466 QKAESDKEEL--------QKQIDVMNKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKIIG 517
Query: 420 XXXXXNIHMFCSRR--PGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQD 477
I CS+R PG M AL L L++ A +S N + +A Q
Sbjct: 518 WDAMIRIQ--CSKRNHPGAKF--MEALKELDLEVNHASLSVVNDLMIQ--QATVKMGNQF 571
Query: 478 VHPEQIKAVLLDSAG 492
+Q+K L + G
Sbjct: 572 FTQDQLKVALTEKVG 586
Score = 48 (22.0 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 133 QMNATNLCSDPQF---GTNRTLQFPENGSSSFTGFRGFDENNGNSLFL 177
Q+N NL Q G N + SS GF G D NN N++ L
Sbjct: 57 QVNEDNLQQRLQALIEGANENWTYAVFWQSSH-GFAGEDNNNNNTVLL 103
>TAIR|locus:2035237 [details] [associations]
symbol:AT1G01260 "AT1G01260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG313259 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF251698 EMBL:AC023628 EMBL:AF488559
EMBL:AY079012 EMBL:AY120752 EMBL:BT004517 IPI:IPI00539052
PIR:H86142 RefSeq:NP_001077440.1 RefSeq:NP_001184883.1
RefSeq:NP_171634.1 UniGene:At.28312 ProteinModelPortal:Q9LNJ5
SMR:Q9LNJ5 IntAct:Q9LNJ5 EnsemblPlants:AT1G01260.1
EnsemblPlants:AT1G01260.2 EnsemblPlants:AT1G01260.3 GeneID:839545
KEGG:ath:AT1G01260 TAIR:At1g01260 InParanoid:Q9LNJ5 OMA:FPANYCY
PhylomeDB:Q9LNJ5 ProtClustDB:CLSN2682849 Genevestigator:Q9LNJ5
Uniprot:Q9LNJ5
Length = 590
Score = 186 (70.5 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 47/111 (42%), Positives = 66/111 (59%)
Query: 274 ENNKVEEMGKNGGSISNAISTITGGDQKGKKKGL-PAK-------NLMAERRRRKKLNDR 325
ENN G+ GG ++A+ G+ + +K+G PA ++ AER+RR+KLN R
Sbjct: 392 ENNSD---GEGGGEWADAVGADESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQR 448
Query: 326 LYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE-----STPP 371
Y LRSVVP ISKMD+AS+LGDA+ Y+ EL ++ + E E S PP
Sbjct: 449 FYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERERLGYSSNPP 499
>TAIR|locus:2035609 [details] [associations]
symbol:MYC2 "AT1G32640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=IEP;RCA] [GO:0043619 "regulation of transcription from RNA
polymerase II promoter in response to oxidative stress"
evidence=IMP] [GO:0051090 "regulation of sequence-specific DNA
binding transcription factor activity" evidence=IMP] [GO:2000068
"regulation of defense response to insect" evidence=IMP]
[GO:0009611 "response to wounding" evidence=IEP;RCA;TAS]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009620 "response to
fungus" evidence=RCA] [GO:0009694 "jasmonic acid metabolic process"
evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0043069
"negative regulation of programmed cell death" evidence=RCA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0045893 GO:GO:0009753 GO:GO:0009611 GO:GO:0009738
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0010200
EMBL:AC017118 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238207 InterPro:IPR025610 Pfam:PF14215 GO:GO:0009269
GO:GO:0043619 GO:GO:0051090 eggNOG:NOG295658 GO:GO:0009963
EMBL:X99548 EMBL:AB000875 EMBL:AJ843256 EMBL:AY037203 EMBL:BT003042
EMBL:AF251691 IPI:IPI00543978 PIR:T52293 RefSeq:NP_174541.1
UniGene:At.22648 ProteinModelPortal:Q39204 SMR:Q39204 IntAct:Q39204
STRING:Q39204 PRIDE:Q39204 EnsemblPlants:AT1G32640.1 GeneID:840158
KEGG:ath:AT1G32640 GeneFarm:1895 TAIR:At1g32640 InParanoid:Q39204
KO:K13422 OMA:KRNHPAA PhylomeDB:Q39204 ProtClustDB:CLSN2682813
Genevestigator:Q39204 GermOnline:AT1G32640 GO:GO:2000068
Uniprot:Q39204
Length = 623
Score = 185 (70.2 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 73/262 (27%), Positives = 119/262 (45%)
Query: 117 GNGGILNGFN-DLSANNQMNATNLCSDPQFGTNRTLQFPENG--SSSFTGF-RGFDENNG 172
G G L+G N +L + N ++ + GT + + P NG SSS F + NG
Sbjct: 256 GGAGDLSGLNWNLDPDQGENDPSMWINDPIGTPGSNE-PGNGAPSSSSQLFSKSIQFENG 314
Query: 173 NSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNSQLLCGIES 232
+S + + L P + + Q F + N + ++L V L G E
Sbjct: 315 SSSTITENPNLDPTPSPVHSQTQNPKFNNTFSRELNFSTSSSTL-VKPRSGEILNFGDEG 373
Query: 233 DK--GKKELTE-------DNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGK 283
+ G + + +N++KR + +++D D + D D LE + V+E+
Sbjct: 374 KRSSGNPDPSSYSGQTQFENKRKRSMVLNEDKVLSFGDKTAGESDHSD-LEASVVKEVAV 432
Query: 284 NGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRAS 343
G ++ P ++ AER+RR+KLN R Y LR+VVP +SKMD+AS
Sbjct: 433 EKRPKKRGRKPANGREE-------PLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKAS 485
Query: 344 ILGDAIEYLKELLQRINDLHNE 365
+LGDAI Y+ EL ++ +E
Sbjct: 486 LLGDAIAYINELKSKVVKTESE 507
>UNIPROTKB|Q5Z988 [details] [associations]
symbol:P0548E04.5 "Os06g0724800 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008212 Gene3D:4.10.280.10 eggNOG:NOG245311
EMBL:AP003685 EMBL:AP007231 EMBL:AK063523 RefSeq:NP_001175006.1
UniGene:Os.11409 EnsemblPlants:LOC_Os06g50900.1 GeneID:9271931
KEGG:osa:9271931 Uniprot:Q5Z988
Length = 213
Score = 157 (60.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 43/93 (46%), Positives = 55/93 (59%)
Query: 249 LSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLP 308
L + + + VDG GL KVE + G S A + +K + +G+P
Sbjct: 104 LDVVEPKASMVVDGGGLGVC--------KVEPGLQAEGGFSAAAAA--PASKKKRVEGMP 153
Query: 309 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDR 341
+KNLMAERRRRK+LNDRL MLRSVVPKISK+ R
Sbjct: 154 SKNLMAERRRRKRLNDRLSMLRSVVPKISKVYR 186
>TAIR|locus:2123954 [details] [associations]
symbol:AT4G29930 "AT4G29930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161575 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AK117730 EMBL:BT005869 EMBL:AY568654
EMBL:AJ630482 EMBL:AK176201 EMBL:AK176276 EMBL:AK176674
EMBL:AK222212 EMBL:AK228201 EMBL:AF488569 IPI:IPI00516806
IPI:IPI00544272 IPI:IPI00546879 IPI:IPI00892082
RefSeq:NP_001031752.1 RefSeq:NP_001078471.1 RefSeq:NP_001119080.1
RefSeq:NP_194722.2 UniGene:At.44068 ProteinModelPortal:Q700E3
SMR:Q700E3 IntAct:Q700E3 EnsemblPlants:AT4G29930.3 GeneID:829116
KEGG:ath:AT4G29930 TAIR:At4g29930 eggNOG:NOG294060
HOGENOM:HOG000006429 InParanoid:Q8GYC3 OMA:PIENIGE PhylomeDB:Q700E3
ProtClustDB:CLSN2680169 Genevestigator:Q700E3 Uniprot:Q700E3
Length = 263
Score = 167 (63.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 309 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELES 368
+KN+++ER RR+KLN RL+ LRSVVP ISK+D+AS++ D+I+Y++EL+ + L E+
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
Query: 369 TPPGSAL 375
S L
Sbjct: 113 LESRSTL 119
Score = 38 (18.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 430 CSRRPGLLLSTMRALDNLGLDIQQAVISCF 459
CS++ ++ + L++L L+I S F
Sbjct: 185 CSKKRETMVQLCKVLESLNLNILTTNFSSF 214
>UNIPROTKB|Q58GE3 [details] [associations]
symbol:UDT1 "Undeveloped tapetum 1" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IDA]
[GO:0048656 "tapetal layer formation" evidence=IMP] [GO:0048658
"tapetal layer development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0048656 EMBL:AY953870
STRING:Q58GE3 KEGG:dosa:Os07t0549600-01 Gramene:Q58GE3
HOGENOM:HOG000084429 Uniprot:Q58GE3
Length = 234
Score = 164 (62.8 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 49/166 (29%), Positives = 75/166 (45%)
Query: 305 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHN 364
K +KNL AERRRR +LN ++ LR+VVPKI+KM + + L DAIE++K L + +L
Sbjct: 60 KEFKSKNLEAERRRRGRLNGNIFALRAVVPKITKMSKEATLSDAIEHIKNLQNEVLELQR 119
Query: 365 ELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPXXXXXXXXXXXXX 424
+L +P G A S + + P+ GQ
Sbjct: 120 QLGDSP-GEAWEKQGS------------ASCSESFVPTENAHYQGQ---VELISLGSSKY 163
Query: 425 NIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAE 470
N+ +F ++R GL + AL + + + F G+A F E
Sbjct: 164 NLKIFWTKRAGLFTKVLEALCSYKVQVLSLNTISFYGYAESFFTIE 209
>UNIPROTKB|Q75GI1 [details] [associations]
symbol:OSJNBa0013A09.16 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC145380
EMBL:AC135228 EMBL:AK120539 RefSeq:NP_001051131.1 UniGene:Os.7441
EnsemblPlants:LOC_Os03g51580.1 GeneID:4333965 KEGG:osa:4333965
OMA:DSCITEQ Uniprot:Q75GI1
Length = 359
Score = 173 (66.0 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 46/157 (29%), Positives = 76/157 (48%)
Query: 310 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEST 369
++++AER+RR+KL+ R L +VP + KMD+AS+LGDAI+Y+K+L ++ L E
Sbjct: 181 EHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGLEEEARRR 240
Query: 370 PPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPXXXXXXXXXXXXXNIHMF 429
P +A+ S L+ S DE + G P IH
Sbjct: 241 PVEAAVLVKKS--QLSADDDDGSSC--DENFDGG-EATAGLPEIEARVSERTVLVKIH-- 293
Query: 430 CSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDV 466
C R G L++ + ++ +GL I + F ++D+
Sbjct: 294 CENRKGALITALSEVETIGLTIMNTNVLPFTSSSLDI 330
>TAIR|locus:2039094 [details] [associations]
symbol:AIB "AT2G46510" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009611 "response to wounding" evidence=IEP;RCA]
[GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP]
[GO:0006612 "protein targeting to membrane" evidence=RCA]
[GO:0007165 "signal transduction" evidence=RCA] [GO:0009414
"response to water deprivation" evidence=RCA] [GO:0009620 "response
to fungus" evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic
process" evidence=RCA] [GO:0009723 "response to ethylene stimulus"
evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0009737
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009611
GO:GO:0009738 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC006526 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC006418
EMBL:AY094399 IPI:IPI00535471 PIR:G84903 RefSeq:NP_566078.1
UniGene:At.19872 ProteinModelPortal:Q9ZPY8 SMR:Q9ZPY8 PaxDb:Q9ZPY8
PRIDE:Q9ZPY8 EnsemblPlants:AT2G46510.1 GeneID:819262
KEGG:ath:AT2G46510 TAIR:At2g46510 eggNOG:NOG313259
HOGENOM:HOG000238207 InParanoid:Q9ZPY8 OMA:KIMEDER PhylomeDB:Q9ZPY8
ProtClustDB:CLSN2917347 Genevestigator:Q9ZPY8 InterPro:IPR025610
Pfam:PF14215 Uniprot:Q9ZPY8
Length = 566
Score = 180 (68.4 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 308 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 367
P ++ AER+RR+KLN R Y LRSVVP ISKMD+AS+LGDAI Y+KEL +++ + +E
Sbjct: 393 PLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERV 452
Query: 368 ST 369
T
Sbjct: 453 GT 454
Score = 38 (18.4 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 253 DDLEDVSVDGSGLNYDSDDFLENN 276
DD ED SV + L + + DFL N
Sbjct: 9 DD-EDKSVVSAVLGHLASDFLRAN 31
>TAIR|locus:2134583 [details] [associations]
symbol:AT4G00870 "AT4G00870" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161472 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF013294 EMBL:AJ519812 IPI:IPI00537799 PIR:T01559
RefSeq:NP_567195.1 UniGene:At.34506 ProteinModelPortal:O23090
SMR:O23090 EnsemblPlants:AT4G00870.1 GeneID:827990
KEGG:ath:AT4G00870 TAIR:At4g00870 eggNOG:NOG285642
InParanoid:O23090 OMA:SIECELM PhylomeDB:O23090
ProtClustDB:CLSN2917469 Genevestigator:O23090 Uniprot:O23090
Length = 423
Score = 169 (64.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 32/67 (47%), Positives = 51/67 (76%)
Query: 303 KKKGLPA--KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIN 360
K+K PA ++ AE++RR+KLN R Y LR++VPK+S+MD+AS+L DA+ Y++ L +I+
Sbjct: 240 KEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKID 299
Query: 361 DLHNELE 367
DL E++
Sbjct: 300 DLETEIK 306
Score = 44 (20.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 24/88 (27%), Positives = 37/88 (42%)
Query: 102 EMGFLDTQATHALNRGNGGILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSF 161
E GF ++ NG I G ++ N+ N N FG+ +T + N + S+
Sbjct: 148 EAGFHGVHTLVSIPINNGIIELGSSESIIQNR-NFINRVKSI-FGSGKTTKHT-NQTGSY 204
Query: 162 TGFRGFDEN-NGNSLFLNRSKLLRPLET 188
D + +GN F + K R LET
Sbjct: 205 PKPAVSDHSKSGNQQFGSERKRRRKLET 232
>TAIR|locus:2118524 [details] [associations]
symbol:TT8 "AT4G09820" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009962 "regulation of flavonoid
biosynthetic process" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:2000029 "regulation
of proanthocyanidin biosynthetic process" evidence=IEP] [GO:0010026
"trichome differentiation" evidence=IMP] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010224 "response to UV-B" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL161516 GO:GO:0009813
EMBL:AL049482 HOGENOM:HOG000237985 GO:GO:0010026 GO:GO:2000029
EMBL:AJ277509 EMBL:DQ446813 EMBL:DQ653187 IPI:IPI00530243
RefSeq:NP_192720.2 UniGene:At.10175 ProteinModelPortal:Q9FT81
SMR:Q9FT81 IntAct:Q9FT81 STRING:Q9FT81 PaxDb:Q9FT81 PRIDE:Q9FT81
EnsemblPlants:AT4G09820.1 GeneID:826571 KEGG:ath:AT4G09820
TAIR:At4g09820 eggNOG:NOG249918 InParanoid:Q9FT81 OMA:NEVDSKT
PhylomeDB:Q9FT81 ProtClustDB:CLSN2681600 Genevestigator:Q9FT81
Uniprot:Q9FT81
Length = 518
Score = 162 (62.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 40/118 (33%), Positives = 67/118 (56%)
Query: 251 ISDDLEDVS-VDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPA 309
+SD + S + S + ++ E+ +V+ + + I + K K LP
Sbjct: 300 LSDSVSTSSYIQSSFATWRVENGKEHQQVKTAPSSQWVLKQMIFRVPFLHDNTKDKRLPR 359
Query: 310 KNL---MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHN 364
++L +AERRRR+KLN++ LRS+VP ++KMD+ SILGD I Y+ L +R+++L N
Sbjct: 360 EDLSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELEN 417
Score = 52 (23.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 426 IHMFCSRRPGLLLSTMRALDNLGLD 450
+ M C R GLLL ++ L LG++
Sbjct: 449 LEMRCEYRDGLLLDILQVLHELGIE 473
>TAIR|locus:2026629 [details] [associations]
symbol:EGL3 "AT1G63650" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009957 "epidermal
cell fate specification" evidence=RCA;IMP] [GO:0001708 "cell fate
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009913 "epidermal cell
differentiation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251687 EMBL:AF013465
EMBL:AF027732 EMBL:AC011622 IPI:IPI00545374 PIR:D96661
RefSeq:NP_001185302.1 RefSeq:NP_176552.1 RefSeq:NP_974080.1
UniGene:At.25024 ProteinModelPortal:Q9CAD0 SMR:Q9CAD0 IntAct:Q9CAD0
STRING:Q9CAD0 PRIDE:Q9CAD0 EnsemblPlants:AT1G63650.1
EnsemblPlants:AT1G63650.2 EnsemblPlants:AT1G63650.3 GeneID:842669
KEGG:ath:AT1G63650 GeneFarm:1894 TAIR:At1g63650 eggNOG:NOG320411
HOGENOM:HOG000237985 InParanoid:Q9CAD0 OMA:ERASANC PhylomeDB:Q9CAD0
ProtClustDB:CLSN2682588 Genevestigator:Q9CAD0 GermOnline:AT1G63650
GO:GO:0009957 Uniprot:Q9CAD0
Length = 596
Score = 163 (62.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 48/157 (30%), Positives = 76/157 (48%)
Query: 313 MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPG 372
++E++RR+KLN+R LRS++P ISK+D+ SIL D IEYL++L +R+ +L + ES
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELESCRESADTE 467
Query: 373 SALTPSTSFYPLTPTPPA----LHSRIK--DELCPSSLPSPNGQPXXXXXXXXXXXXXN- 425
+ +T P A ++S+ K D P+ G
Sbjct: 468 TRITMMKRKKPDDEEERASANCMNSKRKGSDVNVGEDEPADIGYAGLTDNLRISSLGNEV 527
Query: 426 -IHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNG 461
I + C+ R G+LL M + +L LD S +G
Sbjct: 528 VIELRCAWREGILLEIMDVISDLNLDSHSVQSSTGDG 564
>UNIPROTKB|Q336P5 [details] [associations]
symbol:Os10g0575000 "Os10g0575000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 eggNOG:NOG295658 KO:K13422 RefSeq:NP_001065478.1
UniGene:Os.100484 STRING:Q336P5 GeneID:4349484 KEGG:osa:4349484
ProtClustDB:CLSN2698296 Uniprot:Q336P5
Length = 699
Score = 168 (64.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 308 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 367
P ++ AER+RR+KLN R Y LR+VVP +SKMD+AS+LGDAI Y+ EL ++ L + E
Sbjct: 522 PLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLTALETDKE 581
Query: 368 S 368
+
Sbjct: 582 T 582
Score = 40 (19.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 426 IHMFCSRRPGLLLSTMRALDNLGLDIQQAVIS 457
I + C +R M AL L LD+ A +S
Sbjct: 628 IRVQCHKRNHPAARLMTALRELDLDVYHASVS 659
>TAIR|locus:2130619 [details] [associations]
symbol:AT4G16430 "AT4G16430" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:Z97341 EMBL:AL161544
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251688 EMBL:AF428368
EMBL:AY057626 EMBL:BT002301 IPI:IPI00546344 PIR:A71431
RefSeq:NP_193376.1 UniGene:At.33082 UniGene:At.4413
ProteinModelPortal:O23487 SMR:O23487 STRING:O23487 PaxDb:O23487
PRIDE:O23487 EnsemblPlants:AT4G16430.1 GeneID:827337
KEGG:ath:AT4G16430 TAIR:At4g16430 eggNOG:NOG246663
InParanoid:O23487 OMA:RSMSINF PhylomeDB:O23487
ProtClustDB:CLSN2685658 Genevestigator:O23487 Uniprot:O23487
Length = 467
Score = 160 (61.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 51/152 (33%), Positives = 82/152 (53%)
Query: 247 RKLSISDDL-EDVSVDGSGLNYDSDDF-LENNKVEEMGKNG---GSISNAISTITGGD-Q 300
R+LS+ +S++ S D F LE+ +V+ +G + G T+ D Q
Sbjct: 243 RQLSLGGAKPRSMSINFSPKTEDDTGFSLESYEVQAIGGSNQVYGYEQGKDETLYLTDEQ 302
Query: 301 KGKKKGL-PAK-------NLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYL 352
K +K+G PA ++ AER+RR+KLN R Y LR+VVP ISKMD+AS+L DAI Y+
Sbjct: 303 KPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYI 362
Query: 353 KELLQRIN--DLHNELESTPPGSALTPSTSFY 382
++ ++I + ++ + +TP+ Y
Sbjct: 363 TDMQKKIRVYETEKQIMKRRESNQITPAEVDY 394
>UNIPROTKB|Q6ZBI4 [details] [associations]
symbol:P0623F08.11 "Phaseolin G-box binding protein
PG1-like" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P22415 EMBL:AP003914 EMBL:AP004632
EnsemblPlants:LOC_Os08g43070.1 KEGG:dosa:Os08t0543700-00
OMA:PVISHVE Uniprot:Q6ZBI4
Length = 263
Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 298 GDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ 357
G + G P ++ AER+RR+KLN R LR+ VP +S+MD+AS+L DA++Y+ EL +
Sbjct: 82 GPRSGGGGAPPIGHVEAERQRREKLNRRFCELRAAVPTVSRMDKASLLADAVDYIAELRR 141
Query: 358 RINDLHNELESTP--PGSA 374
R+ L E P P +A
Sbjct: 142 RVERLEAEARRAPLAPSAA 160
>TAIR|locus:2020003 [details] [associations]
symbol:AT1G10610 "AT1G10610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC009398 Gene3D:4.10.280.10
SUPFAM:SSF47459 InterPro:IPR025610 Pfam:PF14215 EMBL:AC007067
HOGENOM:HOG000033929 EMBL:AK229375 EMBL:AF488620 IPI:IPI00786098
PIR:F86239 RefSeq:NP_172531.2 UniGene:At.42172
ProteinModelPortal:Q0WNR2 SMR:Q0WNR2 EnsemblPlants:AT1G10610.1
GeneID:837604 KEGG:ath:AT1G10610 TAIR:At1g10610 eggNOG:NOG318339
OMA:GIHGEVV PhylomeDB:Q0WNR2 ProtClustDB:CLSN2920225
Genevestigator:Q0WNR2 Uniprot:Q0WNR2
Length = 441
Score = 158 (60.7 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 299 DQKGKKKGLP-----AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLK 353
D K KK LP +KNL +ER+RR+++N +Y LR+VVPKI+K+++ I DA++Y+
Sbjct: 248 DSKANKKLLPTENFKSKNLHSERKRRERINQAMYGLRAVVPKITKLNKIGIFSDAVDYIN 307
Query: 354 ELLQRINDLHNELE 367
ELL L +EL+
Sbjct: 308 ELLVEKQKLEDELK 321
>UNIPROTKB|Q2QLR0 [details] [associations]
symbol:LOC_Os12g43620 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011
KEGG:dosa:Os12t0632600-00 Gramene:Q2QLR0 OMA:TNVMPFP Uniprot:Q2QLR0
Length = 338
Score = 158 (60.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 297 GGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELL 356
G G +++AERRRR+K+N R L +V+P + KMD+A+ILGDA++Y+KEL
Sbjct: 154 GSSSSAAAPGYVQDHIIAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKELQ 213
Query: 357 QRINDLHNELESTPPGSALTPSTS 380
+++ L E P + + +S
Sbjct: 214 EKVKTLEEEDGGGRPAAMVVRKSS 237
Score = 37 (18.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 194 AQPTLFQKRAALRKNLGGNEAS 215
A T RAA++K GG +S
Sbjct: 136 AMETTATARAAVKKGGGGGSSS 157
>UNIPROTKB|Q84R79 [details] [associations]
symbol:OSJNBb0113I20.1 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R79 Gramene:Q84R79
Uniprot:Q84R79
Length = 301
Score = 153 (58.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/87 (36%), Positives = 55/87 (63%)
Query: 310 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEST 369
++++AER+RR+K+N R L +V+PK+ KMD+A+IL DA Y++EL +++ L + +
Sbjct: 130 EHVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDAASYIRELQEKLKALEEQAAAR 189
Query: 370 PPGSAL-TPSTS-FYPLTPTPPALHSR 394
+A+ TPS + P PP + R
Sbjct: 190 VTEAAMATPSPARAMNHLPVPPEIEVR 216
>TAIR|locus:2062225 [details] [associations]
symbol:AT2G22750 "AT2G22750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF488562 EMBL:DQ446549
EMBL:DQ653015 IPI:IPI00538506 IPI:IPI00846694 PIR:D84616
RefSeq:NP_001077944.1 RefSeq:NP_179860.2 UniGene:At.39395
ProteinModelPortal:Q1PF17 SMR:Q1PF17 EnsemblPlants:AT2G22750.2
GeneID:816805 KEGG:ath:AT2G22750 TAIR:At2g22750 eggNOG:NOG266714
HOGENOM:HOG000240300 InParanoid:Q8S3F3 OMA:FDISIIA PhylomeDB:Q1PF17
ProtClustDB:CLSN2690865 Genevestigator:Q1PF17 Uniprot:Q1PF17
Length = 305
Score = 153 (58.9 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 56/220 (25%), Positives = 98/220 (44%)
Query: 265 LNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKN-LMAERRRRKKLN 323
+N++S + + + K EE+G + I T Q + A++ ++AER+RR+KL
Sbjct: 80 MNHNSPNLIFSPKDEEIGLPEHKKAELIIRGTKRAQSLTRSQSNAQDHILAERKRREKLT 139
Query: 324 DRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYP 383
R L +++P + KMD+AS+LGDAI+++K L + + + + + S + S
Sbjct: 140 QRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSLV 199
Query: 384 LTPTPPALHSRIKDELCPSSLPSPNGQPXXXXXXXXXXXXXNIHMFCSRRPGLLLSTMRA 443
L S D SS S N P I + C ++ G ++ M
Sbjct: 200 LDENHQPSSSSSSDGNRNSS--SSN-LPEIEVRVSGKDVL--IKILCEKQKGNVIKIMGE 254
Query: 444 LDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQI 483
++ LGL I + + F G D+ Q D+ E +
Sbjct: 255 IEKLGLSITNSNVLPF-GPTFDISIIAQKNNNFDMKIEDV 293
>TAIR|locus:2042486 [details] [associations]
symbol:AT2G31220 "AT2G31220" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC006593 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:BT005711 EMBL:BT008608 EMBL:AK228592
EMBL:AF251695 IPI:IPI00521500 PIR:A84718 RefSeq:NP_180680.2
UniGene:At.28314 ProteinModelPortal:Q84TK1 SMR:Q84TK1
EnsemblPlants:AT2G31220.1 GeneID:817679 KEGG:ath:AT2G31220
TAIR:At2g31220 eggNOG:NOG254981 HOGENOM:HOG000083787
InParanoid:Q84TK1 OMA:NTKICEG PhylomeDB:Q84TK1
ProtClustDB:CLSN2716481 Genevestigator:Q84TK1 Uniprot:Q84TK1
Length = 458
Score = 147 (56.8 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 279 EEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISK 338
E N G N I G + + ++ ER RR NDR + L++++P +K
Sbjct: 216 EGANNNNGGFENEILEFNNGVTRKGRGSRKSRTSPTERERRVHFNDRFFDLKNLIPNPTK 275
Query: 339 MDRASILGDAIEYLKELLQRIND 361
+DRASI+G+AI+Y+KELL+ I +
Sbjct: 276 IDRASIVGEAIDYIKELLRTIEE 298
Score = 46 (21.3 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 426 IHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKA 485
I + ++ LL T + LD L LD+ +F + C EG V+ I
Sbjct: 381 IKLVQKKKINCLLFTTKVLDQLQLDLHHVAGGQIGEHYSFLFNTKIC-EGSCVYASGIAD 439
Query: 486 VLLD 489
L++
Sbjct: 440 TLME 443
Score = 44 (20.5 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 146 GTNRTLQFPENGSSSFTGFRGFDENNG 172
G +Q NG + F G + NNG
Sbjct: 197 GVEDQIQMDANGGMNVLYFEGANNNNG 223
>TAIR|locus:2141206 [details] [associations]
symbol:DYT1 "AT4G21330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048658 "tapetal layer development" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161554
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0048658 EMBL:EF637083 EMBL:AL031187
IPI:IPI00519007 PIR:T05175 RefSeq:NP_193864.1 UniGene:At.54456
ProteinModelPortal:O81900 SMR:O81900 EnsemblPlants:AT4G21330.1
GeneID:827883 KEGG:ath:AT4G21330 TAIR:At4g21330 eggNOG:NOG316303
HOGENOM:HOG000112300 InParanoid:O81900 OMA:MEEAPPE PhylomeDB:O81900
ProtClustDB:CLSN2685365 Genevestigator:O81900 Uniprot:O81900
Length = 207
Score = 144 (55.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 300 QKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRI 359
+K + + + NL AERRRR+KL+ RL LRS VP ++ M +ASI+ DAI Y+ EL +
Sbjct: 22 EKEEDENFKSPNLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNV 81
Query: 360 NDL---HNELESTPP 371
+L +E+E PP
Sbjct: 82 KNLLETFHEMEEAPP 96
>UNIPROTKB|Q53L62 [details] [associations]
symbol:LOC_Os11g15210 "Helix-loop-helix DNA-binding domain,
putative" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC145364 EnsemblPlants:LOC_Os11g15210.1
KEGG:dosa:Os11t0258700-00 Uniprot:Q53L62
Length = 458
Score = 156 (60.0 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 305 KGLPAKN-LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLH 363
+G KN +M+ERRRR+KL + +L+SVVP I K+D+ASIL + I YLKEL +R+ +L
Sbjct: 238 QGSSIKNHVMSERRRREKLKEMFLILKSVVPSIHKVDKASILAETIAYLKELEKRVEELE 297
Query: 364 NELESTP 370
+ + +P
Sbjct: 298 SSSQPSP 304
>UNIPROTKB|Q7XKP5 [details] [associations]
symbol:OSJNBb0013O03.11 "OSJNBb0013O03.11 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008210 HOGENOM:HOG000006429 EMBL:AL731621
RefSeq:NP_001173851.1 UniGene:Os.98890
EnsemblPlants:LOC_Os04g23440.1 GeneID:9269507 KEGG:osa:9269507
OMA:NIAMERD Genevestigator:Q7XKP5 Uniprot:Q7XKP5
Length = 293
Score = 151 (58.2 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 30/67 (44%), Positives = 49/67 (73%)
Query: 309 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELES 368
+KN+ ER RRK+LN++L+ LR+VVPKI+KMD+ASI+ DAI ++++L + L +E+
Sbjct: 96 SKNIAMERDRRKRLNEKLFALRAVVPKITKMDKASIVRDAIAHIEKLQEEERQLLDEISV 155
Query: 369 TPPGSAL 375
+A+
Sbjct: 156 LQSAAAV 162
Score = 39 (18.8 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 430 CSRRPGLLLSTMRALDNLGLDIQQAVISCFNG 461
C++ G + A+++L L + A ++ +G
Sbjct: 250 CAKTRGAMAKVCHAVESLYLKVVSASVAAVDG 281
>UNIPROTKB|Q657A4 [details] [associations]
symbol:P0022F12.30 "Regulatory protein B-Peru-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP002908 EMBL:AP003310 EnsemblPlants:LOC_Os01g39580.1
Uniprot:Q657A4
Length = 370
Score = 152 (58.6 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 297 GGDQKGKKKG-LPAKN-LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKE 354
GG + G KN +M+ERRRR+KLN+ +L+S+VP I K+D+ASIL + I YLKE
Sbjct: 173 GGAWMNRAAGSCSIKNHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETIAYLKE 232
Query: 355 LLQRINDLHNELESTPP 371
L +R+ +L + + + P
Sbjct: 233 LERRVQELESGKKVSRP 249
>TAIR|locus:2172932 [details] [associations]
symbol:NIG1 "AT5G46830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005509 "calcium ion binding" evidence=IDA]
[GO:0009651 "response to salt stress" evidence=IEP] [GO:0042538
"hyperosmotic salinity response" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0005509
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238207 InterPro:IPR025610 Pfam:PF14215 GO:GO:0042538
EMBL:AF252636 EMBL:AB022221 IPI:IPI00544679 RefSeq:NP_199495.1
UniGene:At.28311 ProteinModelPortal:Q9LUK7 SMR:Q9LUK7
EnsemblPlants:AT5G46830.1 GeneID:834727 KEGG:ath:AT5G46830
TAIR:At5g46830 eggNOG:NOG258937 InParanoid:Q9LUK7 OMA:HVEAERM
PhylomeDB:Q9LUK7 ProtClustDB:CLSN2914881 ArrayExpress:Q9LUK7
Genevestigator:Q9LUK7 Uniprot:Q9LUK7
Length = 511
Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 43/110 (39%), Positives = 62/110 (56%)
Query: 272 FLENNKVEEMGKNGGSISNAI------STITGGDQKGKKKGL--------PAKNLMAERR 317
F EN K +N + S+ I +T+ +KGKK+G P ++ AER
Sbjct: 291 FGENVKQSFENRNPNTYSDQIQNVVPHATVMLEKKKGKKRGRKPAHGRDKPLNHVEAERM 350
Query: 318 RRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 367
RR+KLN R Y LR+VVP +SKMD+ S+L DA+ Y+ EL + ++ ELE
Sbjct: 351 RREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENV--ELE 398
>UNIPROTKB|Q84R60 [details] [associations]
symbol:OSJNBb0113I20.8 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R60 Gramene:Q84R60
Uniprot:Q84R60
Length = 353
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 291 AISTITGGDQKGKKKGLP--AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDA 348
A S GG G P ++++AER+RR+K+N R L +V+P + KMD+A+IL DA
Sbjct: 171 ASSKGNGGGGSGSSSAAPYAQEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDA 230
Query: 349 IEYLKELLQRINDL 362
+ Y+KE+ +++++L
Sbjct: 231 VRYVKEMQEKLSEL 244
>UNIPROTKB|Q10LR1 [details] [associations]
symbol:Os03g0338400 "BHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 SMART:SM00353 GO:GO:0005634
EMBL:DP000009 EMBL:AP008209 Gene3D:4.10.280.10 EMBL:CM000140
EMBL:GU120349 EMBL:AK073378 RefSeq:NP_001050055.1 UniGene:Os.53575
EnsemblPlants:LOC_Os03g21970.1 GeneID:4332778 KEGG:osa:4332778
eggNOG:NOG299058 OMA:MDASKYI ProtClustDB:CLSN2693906 Uniprot:Q10LR1
Length = 163
Score = 94 (38.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 426 IHMFCSRR-PGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIK 484
+++F + PGLL+S + A D LGL + +A SC + F ++ +E E D H + +
Sbjct: 79 VNVFSGKSCPGLLVSILEAFDELGLSVLEATASCTDTFRLEAIGSENLMEKVDEHVVK-Q 137
Query: 485 AVL 487
AVL
Sbjct: 138 AVL 140
Score = 86 (35.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 312 LMAERRRRKK--LNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNEL 366
+M+ R R+K L ++L +LRS+ + + SIL DA +Y+KEL Q++ L+ E+
Sbjct: 1 MMSSRERKKAAALQEKLQILRSITHSHA-LSNTSILMDASKYIKELKQKVVRLNQEI 56
>TAIR|locus:504954829 [details] [associations]
symbol:GL3 "AT5G41315" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0010091 "trichome branching" evidence=IMP]
[GO:0001708 "cell fate specification" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0009957 "epidermal cell fate
specification" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610 Pfam:PF14215
GO:GO:0010091 HSSP:P61244 EMBL:AB006707 eggNOG:NOG320411
HOGENOM:HOG000237985 ProtClustDB:CLSN2682588 GO:GO:0009957
EMBL:AF246291 IPI:IPI00543830 RefSeq:NP_680372.1 UniGene:At.27204
ProteinModelPortal:Q9FN69 SMR:Q9FN69 IntAct:Q9FN69 STRING:Q9FN69
EnsemblPlants:AT5G41315.1 GeneID:834133 KEGG:ath:AT5G41315
TAIR:At5g41315 InParanoid:Q9FN69 OMA:ERTSANC PhylomeDB:Q9FN69
Genevestigator:Q9FN69 Uniprot:Q9FN69
Length = 637
Score = 149 (57.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 28/55 (50%), Positives = 42/55 (76%)
Query: 315 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEST 369
E++RR+KLN+R LR ++P I+K+D+ SIL D IEYL+EL +R+ +L + EST
Sbjct: 446 EKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQELESCREST 500
Score = 49 (22.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 426 IHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCK-EGQDVH-PEQI 483
I + C+ R G+LL M + +L LD S +G + CK +G + P I
Sbjct: 570 IELRCAWREGVLLEIMDVISDLHLDSHSVQSSTGDGL---LCLTVNCKHKGSKIATPGMI 626
Query: 484 KAVL 487
K L
Sbjct: 627 KEAL 630
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 138 (53.6 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 34/106 (32%), Positives = 61/106 (57%)
Query: 296 TGGDQKGK-KKGLPAK-NLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLK 353
+G Q+ K+ + A+ + ++E++RR K+N+++ L+ ++P +K D+AS+L +AIEYLK
Sbjct: 81 SGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLK 140
Query: 354 ELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDEL 399
+L ++ L + G L P L PP H+RI + L
Sbjct: 141 QLQLQVQTL-----AVMNGLGLNPMR----LPQVPPPTHTRINETL 177
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 146 (56.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 54/181 (29%), Positives = 94/181 (51%)
Query: 205 LRKNLGG-NEASLGVLGTQNSQLLCGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGS 263
+ K +G +E +G G S C S G + N ++S S SV S
Sbjct: 107 MSKRVGDFSEVLIG--GGSGSAAACFGFSGGGNNNNVQGNSSGTRVSSS------SVGAS 158
Query: 264 GLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNL--MAERRRRKK 321
G N ++D++ + + EE G+ + A S+ +G + K A + ++E+RRR +
Sbjct: 159 G-N-ETDEY--DCESEEGGE--AVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSR 212
Query: 322 LNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL-LQ-RINDLHNELESTP---PGSALT 376
+N+++ L+S++P +K D+AS+L +AIEYLK+L LQ ++ + N + P PG+ L
Sbjct: 213 INEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGINLHPLCLPGTTLH 272
Query: 377 P 377
P
Sbjct: 273 P 273
>TAIR|locus:2137574 [details] [associations]
symbol:AT4G37850 "AT4G37850" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL035709
EMBL:AL161592 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
ProtClustDB:CLSN2690865 EMBL:AF488567 IPI:IPI00544527 PIR:T06032
RefSeq:NP_195498.3 UniGene:At.31223 ProteinModelPortal:Q9T072
SMR:Q9T072 EnsemblPlants:AT4G37850.1 GeneID:829941
KEGG:ath:AT4G37850 TAIR:At4g37850 eggNOG:NOG262524
InParanoid:Q8S3F0 PhylomeDB:Q9T072 Genevestigator:Q9T072
Uniprot:Q9T072
Length = 328
Score = 143 (55.4 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 46/176 (26%), Positives = 82/176 (46%)
Query: 299 DQKGKKKGLP-AKN-------LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIE 350
++KG K+ P ++N ++AER+RR+KL R L ++VP + KMD+AS+LGDA++
Sbjct: 133 NRKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALK 192
Query: 351 YLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQ 410
++K L +R+ +L + + S + S L + S +D LP
Sbjct: 193 HIKYLQERVGELEEQKKERRLESMVLVKKSKLILDDNNQSFSSSCEDGFSDLDLPE---- 248
Query: 411 PXXXXXXXXXXXXXNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDV 466
I + C ++ G L M ++ L + I + + F G +D+
Sbjct: 249 ----IEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNF-GPTLDI 299
>TAIR|locus:2154197 [details] [associations]
symbol:SPCH "AT5G53210" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010374 "stomatal complex development" evidence=IMP]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0042127 "regulation of cell proliferation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB013388 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238962 GO:GO:0010374 EMBL:DQ868373
EMBL:AJ630498 EMBL:AY568670 IPI:IPI00520239 RefSeq:NP_200133.2
UniGene:At.50528 ProteinModelPortal:Q700C7 SMR:Q700C7 STRING:Q700C7
EnsemblPlants:AT5G53210.1 GeneID:835402 KEGG:ath:AT5G53210
TAIR:At5g53210 eggNOG:NOG325833 InParanoid:Q700C7 OMA:NHESSVI
PhylomeDB:Q700C7 ProtClustDB:CLSN2719098 Genevestigator:Q700C7
Uniprot:Q700C7
Length = 364
Score = 138 (53.6 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 36/104 (34%), Positives = 57/104 (54%)
Query: 300 QKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVP--KISKMDRASILGDAIEYLKELLQ 357
Q G++K ++ ER RRK++N+ L +LRS++P + + D+ASI+G +EY+ EL Q
Sbjct: 96 QDGQQK---MSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQ 152
Query: 358 RINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCP 401
+ L + + L+P P P+PP L R K L P
Sbjct: 153 VLQSLEAKKQRKTYAEVLSPRVVPSP-RPSPPVLSPR-KPPLSP 194
Score = 46 (21.3 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 434 PGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAE---QCKEGQDVHPEQIK 484
PG ++ + AL++L L+I Q I+ + ++ F + +C+ + +QI+
Sbjct: 307 PGQVMKIIAALEDLALEILQVNINTVDETMLNSFTIKIGIECQLSAEELAQQIQ 360
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 140 (54.3 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 38/112 (33%), Positives = 63/112 (56%)
Query: 301 KGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL-LQ-R 358
+GK+ + ++E+RRR ++N+++ L+S++P SK D+AS+L DAIEYLK+L LQ +
Sbjct: 27 RGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLDDAIEYLKQLQLQVQ 86
Query: 359 INDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQ 410
+ + N L PP + L+ + P+ AL PS + P Q
Sbjct: 87 MLSMRNGLY-LPPVN-LSGAPEHLPIPQMSAALDQNSAKASDPSVVLQPVNQ 136
>TAIR|locus:2062235 [details] [associations]
symbol:NAI1 "AT2G22770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000240300 ProtClustDB:CLSN2690866
EMBL:AF488564 EMBL:AK176248 IPI:IPI00531737 PIR:F84616
RefSeq:NP_850031.2 UniGene:At.43434 ProteinModelPortal:Q8S3F1
SMR:Q8S3F1 STRING:Q8S3F1 PRIDE:Q8S3F1 EnsemblPlants:AT2G22770.1
GeneID:816807 KEGG:ath:AT2G22770 TAIR:At2g22770 eggNOG:NOG310015
InParanoid:Q8S3F1 OMA:TDEYLID PhylomeDB:Q8S3F1
Genevestigator:Q8S3F1 Uniprot:Q8S3F1
Length = 320
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/91 (35%), Positives = 58/91 (63%)
Query: 275 NNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVP 334
+N+V K G + ++ GG ++ L ++++AER+RR+KLN+RL L +++P
Sbjct: 102 SNQVSMDQKVGSKRKDCVNN--GGR---REPHLLKEHVLAERKRRQKLNERLIALSALLP 156
Query: 335 KISKMDRASILGDAIEYLKELLQRINDLHNE 365
+ K D+A++L DAI++LK+L +R+ L E
Sbjct: 157 GLKKTDKATVLEDAIKHLKQLQERVKKLEEE 187
>TAIR|locus:2062230 [details] [associations]
symbol:AT2G22760 "AT2G22760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
EMBL:AF488563 EMBL:DQ446550 EMBL:DQ653016 IPI:IPI00530407
PIR:E84616 RefSeq:NP_179861.2 UniGene:At.39393
ProteinModelPortal:Q1PF16 SMR:Q1PF16 IntAct:Q1PF16 PRIDE:Q1PF16
EnsemblPlants:AT2G22760.1 GeneID:816806 KEGG:ath:AT2G22760
TAIR:At2g22760 eggNOG:NOG292366 InParanoid:Q1PF16 OMA:GCMINIL
PhylomeDB:Q1PF16 ProtClustDB:CLSN2690866 Genevestigator:Q1PF16
Uniprot:Q1PF16
Length = 295
Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 39/166 (23%), Positives = 82/166 (49%)
Query: 307 LPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNEL 366
L ++++AER+RR+KL+++ L +++P + K D+ +IL DAI +K+L +++ L E
Sbjct: 116 LAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRTLKEEK 175
Query: 367 ESTPPGSALT---PSTSFYPLTPT---PPALHSRIKDELCPSSLPSPNGQPXXXXXXXXX 420
E+T ++ S F+ P P++H D+ P + + Q
Sbjct: 176 EATRQMESMILVKKSKVFFDEEPNLSCSPSVHIEF-DQALPE-IEAKISQNDIL------ 227
Query: 421 XXXXNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDV 466
I + C + G +++ + ++N L I+ +++ F +D+
Sbjct: 228 -----IRILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDI 268
>TAIR|locus:2828302 [details] [associations]
symbol:AT2G40435 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] GO:GO:0005739 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC002336 EMBL:AC007020
eggNOG:NOG299058 OMA:MDASKYI ProtClustDB:CLSN2693906 EMBL:AY227635
EMBL:AY649272 EMBL:AK220685 IPI:IPI00531488 RefSeq:NP_565932.1
UniGene:At.37051 ProteinModelPortal:Q8RUZ5 SMR:Q8RUZ5 PRIDE:Q8RUZ5
EnsemblPlants:AT2G40435.1 GeneID:818637 KEGG:ath:AT2G40435
TAIR:At2g40435 HOGENOM:HOG000241360 InParanoid:Q8RUZ5
PhylomeDB:Q8RUZ5 ArrayExpress:Q8RUZ5 Genevestigator:Q8RUZ5
Uniprot:Q8RUZ5
Length = 158
Score = 96 (38.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 18/66 (27%), Positives = 42/66 (63%)
Query: 426 IHMFCSR-RPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIK 484
I++F + +PG+L+S + A +++GL++ +A SC + F++ E ++G+++ E +K
Sbjct: 82 INVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDSFSLHAMGLEN-EDGENMDAEAVK 140
Query: 485 AVLLDS 490
+ D+
Sbjct: 141 QAVTDA 146
Score = 71 (30.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 312 LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHN----ELE 367
+++ ++R L ++ +LRS+ ++ D SI+ DA +Y+++L Q++ + E
Sbjct: 1 MVSREQKRGSLQEKFQLLRSITNSHAEND-TSIIMDASKYIQKLKQKVERFNQDPTAEQS 59
Query: 368 STPPGSALTP 377
S+ P TP
Sbjct: 60 SSEPTDPKTP 69
>UNIPROTKB|Q6ZJC8 [details] [associations]
symbol:OJ1666_A04.16 "Os08g0477900 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003917 RefSeq:NP_001062047.1 UniGene:Os.73988
EnsemblPlants:LOC_Os08g37290.1 GeneID:4345836 KEGG:osa:4345836
OMA:LLNRDEH ProtClustDB:CLSN2697408 Uniprot:Q6ZJC8
Length = 223
Score = 129 (50.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 303 KKKGLPA--KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIN 360
+K G PA + AER+RR+++N L LR++VP S+MD+A++LG+ + +++EL R +
Sbjct: 13 RKGGSPAVRSHSEAERKRRQRINAHLATLRTLVPSASRMDKAALLGEVVRHVRELRCRAD 72
Query: 361 DLHNELESTPPG 372
D + PG
Sbjct: 73 DATEGADVVVPG 84
Score = 40 (19.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 430 CSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAE 470
C+ RPGL+ RA+ ++ +A ++ G V +
Sbjct: 125 CADRPGLMSDLGRAVRSVSARPVRAEVATVGGRTRSVLELD 165
>UNIPROTKB|Q7XPS7 [details] [associations]
symbol:OSJNBa0065O17.4 "OSJNBa0065O17.4 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL606682
ProteinModelPortal:Q7XPS7 Gramene:Q7XPS7 Uniprot:Q7XPS7
Length = 567
Score = 141 (54.7 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 29/59 (49%), Positives = 44/59 (74%)
Query: 310 KN-LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELE 367
KN +++ERRRR+KLN+ +L+S+VP I K+D+ASIL + I YLK L +R+ +L + E
Sbjct: 391 KNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRVKELESSSE 449
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 139 (54.0 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 59/214 (27%), Positives = 100/214 (46%)
Query: 191 STGAQPTLFQKRAALRKNLGG---NEASLGVLGTQNSQLLCGIESDKGKKELTEDNEKK- 246
S + P +FQ R K+ NE S+ +++Q C I D +K+ +++EK
Sbjct: 224 SPQSPPNVFQTRVLGAKDSEDKVLNE-SVASATPKDNQKACLISEDSCRKD--QESEKAV 280
Query: 247 --RKLSISDDLEDVSVDGS-GLNYDSDDFLE----NNKVEEMGKNGGSISNAISTITGGD 299
+ + L+ S S L + + + VEE ++G A + TG
Sbjct: 281 VCSSVGSGNSLDGPSESPSLSLKRKHSNIQDIDCHSEDVEE--ESGDGRKEAGPSRTGLG 338
Query: 300 QKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL-LQ- 357
K + + NL +ERRRR ++N+++ L+ ++P +K+D+AS+L +AIEYLK L LQ
Sbjct: 339 SK-RSRSAEVHNL-SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQV 396
Query: 358 RINDLHNELESTPPGSALTPSTSFYPLTPTPPAL 391
+I + + PP P YP A+
Sbjct: 397 QIMSMASGYY-LPPAVMFPPGMGHYPAAAAAMAM 429
>UNIPROTKB|Q948Y2 [details] [associations]
symbol:Plw-OSB2 "R-type basic helix-loop-helix protein"
species:4530 "Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 HOGENOM:HOG000237985 EMBL:AB021080
ProteinModelPortal:Q948Y2 Gramene:Q948Y2 Genevestigator:Q948Y2
Uniprot:Q948Y2
Length = 451
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 25/54 (46%), Positives = 42/54 (77%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHN 364
++M+ERRRR+KLN+ +L+S++P + K+D+ASIL + I YLK L +R+ +L +
Sbjct: 379 HVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVLEKRVKELES 432
>UNIPROTKB|Q653A4 [details] [associations]
symbol:OSJNBa0043B22.14 "Basic helix-loop-helix-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:AP008212 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP005470 RefSeq:NP_001174827.1
UniGene:Os.73031 EnsemblPlants:LOC_Os06g33450.2 GeneID:9268477
KEGG:osa:9268477 OMA:YASPAMT Uniprot:Q653A4
Length = 396
Score = 132 (51.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 53/209 (25%), Positives = 95/209 (45%)
Query: 210 GGNEASLGVLGTQNSQLLC--GIESDKGKKELTEDNEKKRKLSISDDLEDVSV-DGSGLN 266
GG A+ LG+ + C G+ + ++L E K + ++ + V D G
Sbjct: 47 GGAPATTTTLGSPIAAAACISGVVGGQNHQQLPEPAAAKTVPATNNKRREEEVADRDG-- 104
Query: 267 YDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRL 326
D DD ++ ++ K S+ K ++ ER RRK++N+ L
Sbjct: 105 -DGDD--DDGSPQKRRKCCSPESSTTDVAAATTPK-------TAHIAVERNRRKQMNENL 154
Query: 327 YMLRSVVP--KISKMDRASILGDAIEYLKELLQRINDLHNELE-STPPGSALTP----ST 379
+LRS++P + + D+ASI+G ++Y+KEL Q ++ L + + L+P +
Sbjct: 155 AVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLEAKKQRKVYTDQVLSPRPPATV 214
Query: 380 SFYPLTPTPPALHSRIKDELCPSSLP-SP 407
+ +P PP L R+ +L S+ P SP
Sbjct: 215 AASCCSPRPPQLSPRLPPQLLKSTPPLSP 243
Score = 46 (21.3 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 432 RRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVF 467
R PG + + AL+ L+I A IS + A++ F
Sbjct: 337 RSPGQAVKIIAALEGRSLEILHAKISTVDDTAVNSF 372
>UNIPROTKB|Q69IU0 [details] [associations]
symbol:P0498F03.15 "Putative MYC-related DNA binding
protein RD22BP1" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 EMBL:AP006525 EMBL:AP007254
RefSeq:NP_001063693.1 UniGene:Os.86289
EnsemblPlants:LOC_Os09g34330.1 GeneID:4347601 KEGG:osa:4347601
OMA:GPTVSHV ProtClustDB:CLSN2725166 Uniprot:Q69IU0
Length = 284
Score = 131 (51.2 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 298 GDQKGKKKGLPA-KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELL 356
G + G + P ++ AER+RR+KLN R LR+ VP +S+MD+AS+L DA Y+ EL
Sbjct: 98 GRKPGPRPDGPTVSHVEAERQRREKLNRRFCDLRAAVPTVSRMDKASLLADAAAYIAELR 157
Query: 357 QRINDLHNE 365
R+ L ++
Sbjct: 158 ARVARLESD 166
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 132 (51.5 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 297 GGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL- 355
GG + + NL +E+RRR K+N+++ L+S++P +K D+AS+L +AIEYLK+L
Sbjct: 95 GGSGSKRSRAAEVHNL-SEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQ 153
Query: 356 LQ-RINDLHNELESTPP--GSALTPS 378
LQ ++ + N + P AL P+
Sbjct: 154 LQVQMLSMRNGVYLNPSYLSGALEPA 179
>TAIR|locus:2144791 [details] [associations]
symbol:HEC3 "AT5G09750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB020752
EMBL:AL353994 GO:GO:0048462 GO:GO:0010500 IPI:IPI00522404
PIR:T49923 RefSeq:NP_196537.1 UniGene:At.65500
ProteinModelPortal:Q9LXD8 SMR:Q9LXD8 IntAct:Q9LXD8 STRING:Q9LXD8
EnsemblPlants:AT5G09750.1 GeneID:830835 KEGG:ath:AT5G09750
TAIR:At5g09750 eggNOG:NOG238444 HOGENOM:HOG000210013
InParanoid:Q9LXD8 OMA:NDPIGMA ProtClustDB:CLSN2916890
Genevestigator:Q9LXD8 Uniprot:Q9LXD8
Length = 224
Score = 126 (49.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 313 MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPP- 371
+A R RR+++++R+ +L+ +VP +KMD AS+L +AI Y+K L ++I L+N TPP
Sbjct: 132 VAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTPPP 191
Query: 372 --GSALTPSTSFYPLTPTPPA 390
A T+ + P PP+
Sbjct: 192 PQDQASQAVTTSWVSPPPPPS 212
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 240 TEDNEKKRKLSISDDLEDVS 259
T K+R + ISDD + V+
Sbjct: 114 TVKKPKRRNVRISDDPQSVA 133
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 121 (47.7 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 33/123 (26%), Positives = 63/123 (51%)
Query: 287 SISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILG 346
++ N S +G ++ + NL +ERRRR ++N+R+ L+ ++P S+ D+ASIL
Sbjct: 240 TMGNKSSQRSGSTRRSR--AAEVHNL-SERRRRDRINERMKALQELIPHCSRTDKASILD 296
Query: 347 DAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSR-IKDELCPSSLP 405
+AI+YLK L ++ + +A S +P + P ++ ++ ++ S P
Sbjct: 297 EAIDYLKSLQMQLQVMWMG-SGMAAAAAAAASPMMFPGVQSSPYINQMAMQSQMQLSQFP 355
Query: 406 SPN 408
N
Sbjct: 356 VMN 358
Score = 47 (21.6 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 244 EKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMG 282
++KRK + D E VS GL D + N + G
Sbjct: 212 DRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSG 250
Score = 46 (21.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 5 PGFKSMLEVEDDWYVTGNTSLNNHQDITFPPNLGD 39
P F+S + + N S N HQ T P ++ D
Sbjct: 141 PKFRSSVITVGPSHCGSNQSTNIHQATTLPVSMSD 175
>UNIPROTKB|Q5WMQ1 [details] [associations]
symbol:OSJNBa0053E01.1 "Putative uncharacterized protein
OSJNBa0053E01.1" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR002912
InterPro:IPR011598 Pfam:PF01842 SMART:SM00353 GO:GO:0005634
GO:GO:0016597 GO:GO:0008152 EMBL:AP008211 Gene3D:4.10.280.10
EMBL:CM000142 ProtClustDB:CLSN2693906 EMBL:AC134342 EMBL:AK063202
RefSeq:NP_001055237.1 UniGene:Os.11231
EnsemblPlants:LOC_Os05g27090.1 GeneID:4338459 KEGG:osa:4338459
eggNOG:NOG289294 OMA:EARATCA Uniprot:Q5WMQ1
Length = 153
Score = 81 (33.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 426 IHMFCSRR-PGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAE 470
I++F + PGLL S ++A D LGL + +A SC N F ++ E
Sbjct: 81 INVFMDKSSPGLLSSILQAFDELGLTVIEARASCSNSFRLEAVGGE 126
Score = 81 (33.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/55 (30%), Positives = 37/55 (67%)
Query: 312 LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNEL 366
+++ ++R L+++L +LR++ + +++ SI+ DA Y+K+L Q+I L+ EL
Sbjct: 1 MVSREQKRASLHEKLQILRTLTHSHA-VNKMSIISDASTYIKDLKQKIAALNKEL 54
>TAIR|locus:504956068 [details] [associations]
symbol:AT2G31215 "AT2G31215" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002685 GO:GO:0003700 Gene3D:4.10.280.10 SUPFAM:SSF47459
IPI:IPI00519006 RefSeq:NP_850161.1 UniGene:At.52991
ProteinModelPortal:F4IQQ9 SMR:F4IQQ9 EnsemblPlants:AT2G31215.1
GeneID:817678 KEGG:ath:AT2G31215 PhylomeDB:F4IQQ9 Uniprot:F4IQQ9
Length = 129
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 301 KGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIN 360
KG KK ++ + ER RR NDR + L++++P +K ASI+ D I Y+ EL + ++
Sbjct: 17 KGSKK---SRTFLTERERRALFNDRFFDLKNLIPNPTKGGEASIVQDGIVYINELQRLVS 73
Query: 361 DLHNELESTPPGS 373
+L +E G+
Sbjct: 74 ELKYLVEKKKCGA 86
>TAIR|locus:2205455 [details] [associations]
symbol:BIM2 "AT1G69010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC011665 EMBL:BT002352 EMBL:AY080650 EMBL:AY086798
EMBL:AF488627 IPI:IPI00519398 PIR:E96714 RefSeq:NP_177064.1
UniGene:At.35458 ProteinModelPortal:Q9CAA4 SMR:Q9CAA4 PaxDb:Q9CAA4
PRIDE:Q9CAA4 EnsemblPlants:AT1G69010.1 GeneID:843233
KEGG:ath:AT1G69010 TAIR:At1g69010 eggNOG:NOG246683
HOGENOM:HOG000070523 InParanoid:Q9CAA4 OMA:YVQYLQE PhylomeDB:Q9CAA4
ProtClustDB:CLSN2682349 Genevestigator:Q9CAA4 GermOnline:AT1G69010
Uniprot:Q9CAA4
Length = 311
Score = 119 (46.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 31/118 (26%), Positives = 62/118 (52%)
Query: 262 GSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKK 321
G G N + +D+ E + + + G S + + + + K + +K+ + E+RRR K
Sbjct: 4 GKG-NQEEEDYGEEDFNSK--REGPSSNTTVHSNRDSKENDKASAIRSKHSVTEQRRRSK 60
Query: 322 LNDRLYMLRSVVPKIS-KMDRASILGDAIEYLKELLQRINDLHNELESTPPGSALTPS 378
+N+R +LR ++P K D AS L + I+Y++ L +++ + E + PG + P+
Sbjct: 61 INERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQ----KYEGSYPGWSQEPT 114
Score = 51 (23.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 436 LLLSTMRALDNLGLDIQQAVIS 457
LL S +AL N G+D+ QA +S
Sbjct: 241 LLSSLTQALQNAGIDLSQAKLS 262
>TAIR|locus:2093746 [details] [associations]
symbol:FMA "AT3G24140" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0010052
"guard cell differentiation" evidence=IMP] [GO:0045597 "positive
regulation of cell differentiation" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IDA] [GO:0051782 "negative regulation of cell
division" evidence=IMP] [GO:0000165 "MAPK cascade" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010103 "stomatal complex
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045893
GO:GO:0003677 GO:GO:0045597 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238962
GO:GO:0051782 EMBL:AB028621 GO:GO:0010052 EMBL:AK221324
EMBL:BT028961 EMBL:AF488624 IPI:IPI00523995 RefSeq:NP_189056.2
UniGene:At.37586 ProteinModelPortal:Q56YJ8 SMR:Q56YJ8 IntAct:Q56YJ8
STRING:Q56YJ8 PRIDE:Q56YJ8 EnsemblPlants:AT3G24140.1 GeneID:822000
KEGG:ath:AT3G24140 TAIR:At3g24140 eggNOG:NOG326823
InParanoid:Q56YJ8 OMA:KRRRLYG PhylomeDB:Q56YJ8
ProtClustDB:CLSN2680105 Genevestigator:Q56YJ8 Uniprot:Q56YJ8
Length = 414
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 56/211 (26%), Positives = 92/211 (43%)
Query: 268 DSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKK-GLPAK-----------NLMAE 315
D DD +NN V+ G +T + K K+K +K ++ E
Sbjct: 144 DQDDDNDNNSVQLRFIGGEEEDRENKNVTKKEVKSKRKRARTSKTSEEVESQRMTHIAVE 203
Query: 316 RRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDLHNE-----LES 368
R RRK++N+ L +LRS++P + + D+ASI+G AIE+++EL Q + L ++ L
Sbjct: 204 RNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGE 263
Query: 369 TPPGSALTPSTSFYPLTPT-----PPALHSRIKDELCPSSL---PSPNGQPXXXXXXXXX 420
T T ++S P+T P + + + L + N
Sbjct: 264 TGRDMTTTTTSSSSPITTVANQAQPLIITGNVTELEGGGGLREETAENKSCLADVEVKLL 323
Query: 421 XXXXNIHMFCSRRPGLLLSTMRALDNLGLDI 451
I + RRPG L+ T+ AL++L L I
Sbjct: 324 GFDAMIKILSRRRPGQLIKTIAALEDLHLSI 354
>UNIPROTKB|Q6ETQ5 [details] [associations]
symbol:P0613F08.25 "Basic helix-loop-helix-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP004801 ProteinModelPortal:Q6ETQ5
EnsemblPlants:LOC_Os02g15760.1 Gramene:Q6ETQ5 OMA:FRILETW
Uniprot:Q6ETQ5
Length = 415
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 35/118 (29%), Positives = 60/118 (50%)
Query: 279 EEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVP--KI 336
++ G + S S A GD G K ++ ER RRK++N+ L +LRS++P +
Sbjct: 105 KQKGSSSSSSSPAALAAAVGDGDGAAK---MSHITVERNRRKQMNEHLAVLRSLMPCFYV 161
Query: 337 SKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSAL-----TPSTSFYPLTPTPP 389
+ D+ASI+G ++Y+KEL Q + L + + +P+ + + PTPP
Sbjct: 162 KRGDQASIIGGVVDYIKELQQVLRSLEAKKNRKAYADQVLSPRPSPAAAALMVKPTPP 219
>UNIPROTKB|Q7X8R0 [details] [associations]
symbol:OSJNBa0083N12.3 "OSJNBa0083N12.3 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008210 EMBL:CM000141 eggNOG:NOG254981 EMBL:AL606683
RefSeq:NP_001053749.1 UniGene:Os.49995
EnsemblPlants:LOC_Os04g51070.1 GeneID:4336865 KEGG:osa:4336865
OMA:RASIVGD ProtClustDB:CLSN2695079 Uniprot:Q7X8R0
Length = 464
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 297 GGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELL 356
G + GK KG N ER RR++LN + LR + P +K DRASI+GDAIEY+ EL
Sbjct: 254 GKGEFGKGKG--KANFATERERREQLNVKFRTLRMLFPNPTKNDRASIVGDAIEYIDELN 311
Query: 357 QRINDLHNELESTPPGS 373
+ + +L +E G+
Sbjct: 312 RTVKELKILVEQKRHGN 328
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 297 GGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELL 356
G + + + NL AERRRR+K+N+R+ L+ ++P+ +K + S+L D IEY+K L
Sbjct: 142 GSTSRKRSRAAEMHNL-AERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLE 200
Query: 357 QRINDL--HNELE-STPPGSALTPS 378
+IN H + + PP PS
Sbjct: 201 MQINQFMPHMAMGMNQPPAYIPFPS 225
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 46/173 (26%), Positives = 81/173 (46%)
Query: 194 AQPTLFQKRAALRKNLGG--NEASLGVLGTQNSQLLCGIESDK-----GKKELTEDNEKK 246
A PT + AA ++ +EA L + G+ N+ + + +D E+ E++
Sbjct: 112 ATPTPTPRAAARSDDVSSRLDEADLSICGS-NAVVAPALPADDDDDIDAAAPREEEEEEE 170
Query: 247 RKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKG 306
+ S GSG S + + EE+ + +++ K + +
Sbjct: 171 EGPGAARAAGASSSGGSGSGSGSYPLFKRGR-EELVDSLSEVADETRPSKRPAAKRRTRA 229
Query: 307 LPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRI 359
NL +ERRRR ++N++L L+ +VP +K D+ASIL +AIEYLK L ++
Sbjct: 230 AEVHNL-SERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQV 281
>TAIR|locus:2009537 [details] [associations]
symbol:AT1G22490 "AT1G22490" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009536
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006551
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238962
EMBL:AY088234 EMBL:AF488622 IPI:IPI00545534 PIR:B86358
RefSeq:NP_564171.1 UniGene:At.19247 ProteinModelPortal:Q9SK91
SMR:Q9SK91 EnsemblPlants:AT1G22490.1 GeneID:838855
KEGG:ath:AT1G22490 TAIR:At1g22490 eggNOG:NOG281753
InParanoid:Q8L9T3 OMA:ESHANIK PhylomeDB:Q9SK91
ProtClustDB:CLSN2679534 Genevestigator:Q9SK91 Uniprot:Q9SK91
Length = 304
Score = 126 (49.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 41/147 (27%), Positives = 70/147 (47%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDLHNELES 368
++ ER RRK++N+ L +LRS++P + D+ASI+G AI Y+KEL + + +
Sbjct: 117 HIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVKELEHILQSMEPKRTR 176
Query: 369 T--PPGSALTPSTSFYPLTP--TPPALHSRIKDELCPSSLPSPNGQPXXXXXXXXXXXXX 424
T P G + S+ P T + P ++ ++ P S SP
Sbjct: 177 THDPKGDKTSTSSLVGPFTDFFSFPQYSTKSSSDV-PESSSSP-----AEIEVTVAESHA 230
Query: 425 NIHMFCSRRPGLLLSTMRALDNLGLDI 451
NI + ++P LL + +L +L L +
Sbjct: 231 NIKIMTKKKPRQLLKLITSLQSLRLTL 257
>TAIR|locus:2116977 [details] [associations]
symbol:AT4G01460 "AT4G01460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488590 EMBL:AF096370 EMBL:AL161492 EMBL:AY099780
EMBL:AY128881 IPI:IPI00528581 PIR:A85019 PIR:T01948
RefSeq:NP_192055.1 UniGene:At.34425 ProteinModelPortal:Q9M128
SMR:Q9M128 EnsemblPlants:AT4G01460.1 GeneID:828089
KEGG:ath:AT4G01460 TAIR:At4g01460 eggNOG:NOG293017
HOGENOM:HOG000238962 InParanoid:Q9M128 OMA:QINGEVM PhylomeDB:Q9M128
ProtClustDB:CLSN2685500 Genevestigator:Q9M128 Uniprot:Q9M128
Length = 315
Score = 125 (49.1 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 45/173 (26%), Positives = 76/173 (43%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDLHNELES 368
++ ER RR+++N+ L LRS++P + + D+ASI+G AI+++KEL Q + L E E
Sbjct: 117 HIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSL--EAEK 174
Query: 369 TPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSS---LPSPNGQPXXXXXXXXXXXXXN 425
G+ TP T+ + + +S I S G +
Sbjct: 175 RKDGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTARFGGGDTTEVEATVIQNHVS 234
Query: 426 IHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQ---CKEG 475
+ + C R +L + +++ L L I IS F + F + CK G
Sbjct: 235 LKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLG 287
>TAIR|locus:2078411 [details] [associations]
symbol:AT3G56220 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598
SMART:SM00353 GO:GO:0005739 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL163763 ProtClustDB:CLSN2693906 OMA:HAESETS
HOGENOM:HOG000241360 EMBL:BT004764 EMBL:AK228035 IPI:IPI00541566
PIR:T47739 RefSeq:NP_191181.1 UniGene:At.34957
ProteinModelPortal:Q9LYM0 SMR:Q9LYM0 IntAct:Q9LYM0 PRIDE:Q9LYM0
EnsemblPlants:AT3G56220.1 GeneID:824788 KEGG:ath:AT3G56220
TAIR:At3g56220 eggNOG:NOG276705 InParanoid:Q9LYM0 PhylomeDB:Q9LYM0
Genevestigator:Q9LYM0 Uniprot:Q9LYM0
Length = 156
Score = 80 (33.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 315 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELES 368
E +R L ++ ++LRS+ ++ + SI+ DA +Y+K+L Q++ ++N S
Sbjct: 5 EHKRGSSLREKFHLLRSITDSHAESE-TSIIVDASKYIKKLKQKVEKINNATTS 57
Score = 77 (32.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 435 GLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDS 490
G+L+ + ++LGLD+ +A +SC + F++ + +G + E +K + ++
Sbjct: 92 GMLVCVLETFEDLGLDVVEARVSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEA 147
>TAIR|locus:2042556 [details] [associations]
symbol:AT2G31210 "AT2G31210" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC006593 Gene3D:4.10.280.10
SUPFAM:SSF47459 eggNOG:NOG254981 HOGENOM:HOG000083787
ProtClustDB:CLSN2716481 EMBL:AJ519809 EMBL:AK118441 EMBL:BT009675
IPI:IPI00540344 PIR:H84717 RefSeq:NP_180679.2 UniGene:At.38250
ProteinModelPortal:Q8GX46 SMR:Q8GX46 EnsemblPlants:AT2G31210.1
GeneID:817677 KEGG:ath:AT2G31210 TAIR:At2g31210 InParanoid:Q8GX46
OMA:ERERRCH PhylomeDB:Q8GX46 Genevestigator:Q8GX46 Uniprot:Q8GX46
Length = 428
Score = 127 (49.8 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 301 KGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIN 360
+GK+K P ER RR LN+R L+ ++P SK DRASIL D I+Y+ EL +R++
Sbjct: 208 RGKRKNKP---FTTERERRCHLNERYEALKLLIPSPSKGDRASILQDGIDYINELRRRVS 264
Query: 361 DL 362
+L
Sbjct: 265 EL 266
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 127 (49.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 276 NKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPK 335
N +E +I N + +G +++ + NL +ERRRR ++N+R+ L+ ++P
Sbjct: 230 NHTDESVSLSDAIGNKSNQRSGSNRRSR--AAEVHNL-SERRRRDRINERMKALQELIPH 286
Query: 336 ISKMDRASILGDAIEYLKEL 355
SK D+ASIL +AI+YLK L
Sbjct: 287 CSKTDKASILDEAIDYLKSL 306
>TAIR|locus:504954900 [details] [associations]
symbol:AT5G43175 "AT5G43175" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB008267 HOGENOM:HOG000240244 ProtClustDB:CLSN2688032
IPI:IPI00519888 RefSeq:NP_680385.1 UniGene:At.55333
ProteinModelPortal:Q3E7L7 SMR:Q3E7L7 EnsemblPlants:AT5G43175.1
GeneID:834335 KEGG:ath:AT5G43175 TAIR:At5g43175 eggNOG:NOG323547
InParanoid:Q3E7L7 OMA:MENEAFV PhylomeDB:Q3E7L7
Genevestigator:Q3E7L7 Uniprot:Q3E7L7
Length = 223
Score = 121 (47.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 51/156 (32%), Positives = 87/156 (55%)
Query: 218 VLGTQNSQLLCGIESDKGKKELTEDNEKKRKLSISDDL--EDVSV--DGSGLN-YDSDDF 272
VL N Q ++S +++L + KK+KLS +L E + DG L+ Y+S D
Sbjct: 59 VLDGSNHQTNRNVDS---RQDLLKPR-KKQKLSSESNLVTEPKTAWRDGQSLSSYNSSD- 113
Query: 273 LENNKVEEMGKNGGSISNAISTITGGDQKGK-KKGLPA--KNLMAERRRRKKLNDRLYML 329
+E K G +SN ++ +K K +G+ + ++L A R+RR+++NDRL L
Sbjct: 114 ------DE--KALGLVSNTSKSLK---RKAKANRGIASDPQSLYA-RKRRERINDRLKTL 161
Query: 330 RSVVPKISKMDRASILGDAIEYLKELLQRINDLHNE 365
+S+VP +K+D +++L DA+ Y+K L +I L +E
Sbjct: 162 QSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSE 197
>UNIPROTKB|Q6ESL3 [details] [associations]
symbol:OJ1294_G06.8 "DNA binding protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005093 ProteinModelPortal:Q6ESL3
EnsemblPlants:LOC_Os09g24490.1 KEGG:dosa:Os09t0410700-00
Gramene:Q6ESL3 OMA:RRHECIA Uniprot:Q6ESL3
Length = 363
Score = 120 (47.3 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 286 GSISNAISTITGGD-QKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASI 344
GS+ + +T + K + AERRRR+++N L LRS++P +K D+AS+
Sbjct: 84 GSLQAELGRVTAREIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASL 143
Query: 345 LGDAIEYLKEL 355
L + IE++KEL
Sbjct: 144 LAEVIEHVKEL 154
Score = 47 (21.6 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 430 CSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQI 483
C RP L+ RAL L L ++A I+ G V E Q H + +
Sbjct: 220 CEDRPDLIPDIARALAALRLRARRAEITTLGGRVRSVLLIT-ADEQQQQHCDDV 272
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 126 (49.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 43/129 (33%), Positives = 64/129 (49%)
Query: 232 SDKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNA 291
S G + LT D S S D ++D S +E+ EE K GG S
Sbjct: 152 SGGGSQRLTMDTYDVGFTSTSMGSHDNTIDDHDSVCHSRPQMED---EEEKKAGGKSS-- 206
Query: 292 ISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEY 351
+ST K+ A + +ER+RR K+N R+ L+ +VP SK D+AS+L + IEY
Sbjct: 207 VST--------KRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEY 258
Query: 352 LKELLQRIN 360
LK+L +++
Sbjct: 259 LKQLQAQVS 267
>TAIR|locus:2199221 [details] [associations]
symbol:RSL4 "AT1G27740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048766 "root hair
initiation" evidence=IMP] [GO:0048765 "root hair cell
differentiation" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045893 GO:GO:0009733
GO:GO:0003677 GO:GO:0016049 GO:GO:0003700 GO:GO:0006351
EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY085436
IPI:IPI00523669 PIR:B86402 RefSeq:NP_564293.1 UniGene:At.41015
ProteinModelPortal:Q8LEG1 SMR:Q8LEG1 EnsemblPlants:AT1G27740.1
GeneID:839667 KEGG:ath:AT1G27740 TAIR:At1g27740 eggNOG:NOG244031
HOGENOM:HOG000240244 InParanoid:Q8LEG1 OMA:DESNTNW PhylomeDB:Q8LEG1
ProtClustDB:CLSN2688032 Genevestigator:Q8LEG1 GO:GO:0048766
Uniprot:Q8LEG1
Length = 258
Score = 122 (48.0 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 40/141 (28%), Positives = 76/141 (53%)
Query: 227 LCGIES--DKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKN 284
LC S D ++EL + +K+R S S+ +VD S N+ L N+ +E
Sbjct: 106 LCKTNSNCDVTRQELAKSKKKQRVSSESN-----TVDESNTNWVDGQSLSNSSDDEKA-- 158
Query: 285 GGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASI 344
+++++ G + K ++L A R+RR+K+N+RL L+++VP +K+D +++
Sbjct: 159 ------SVTSVKGKTRATKGTATDPQSLYA-RKRREKINERLKTLQNLVPNGTKVDISTM 211
Query: 345 LGDAIEYLKELLQRINDLHNE 365
L +A+ Y+K L +I L ++
Sbjct: 212 LEEAVHYVKFLQLQIKLLSSD 232
>TAIR|locus:2038510 [details] [associations]
symbol:AT1G06170 "AT1G06170" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P61244 HOGENOM:HOG000083787 ProtClustDB:CLSN2716481
EMBL:AF488619 EMBL:AC025290 EMBL:BT004262 IPI:IPI00518401
PIR:C86197 RefSeq:NP_172107.1 RefSeq:NP_973769.1 UniGene:At.42353
ProteinModelPortal:Q9LND0 SMR:Q9LND0 EnsemblPlants:AT1G06170.1
EnsemblPlants:AT1G06170.2 GeneID:837126 KEGG:ath:AT1G06170
TAIR:At1g06170 eggNOG:NOG264433 InParanoid:Q9LND0 OMA:YASAIAD
PhylomeDB:Q9LND0 Genevestigator:Q9LND0 Uniprot:Q9LND0
Length = 420
Score = 126 (49.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 34/102 (33%), Positives = 56/102 (54%)
Query: 261 DGSGLNYDSDDFLENNKVEEM-GKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRR 319
+GS + D D N V M + ++ + ++ G +K +K P ER RR
Sbjct: 173 NGSFMGVDQDQTETNQGVNLMYDEENNNLDDGLNRKGRGSKK--RKIFPT-----ERERR 225
Query: 320 KKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRIND 361
DR L++++P +K DRASI+G+AI+Y+KELL+ I++
Sbjct: 226 VHFKDRFGDLKNLIPNPTKNDRASIVGEAIDYIKELLRTIDE 267
>UNIPROTKB|Q8LSP3 [details] [associations]
symbol:OJ1203D03.3 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000009 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC099732
EnsemblPlants:LOC_Os03g12760.1 KEGG:dosa:Os03t0229100-00
HOGENOM:HOG000239880 OMA:DSCLNIT Uniprot:Q8LSP3
Length = 451
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 43/160 (26%), Positives = 72/160 (45%)
Query: 310 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEST 369
++++AER+RR+KL + L ++VP + K D+ S+LG I+Y+K+L +++ L
Sbjct: 287 EHVIAERKRREKLQQQFVALATIVPGLKKTDKISLLGSTIDYVKQLEEKVKALEE----- 341
Query: 370 PPGSALTPSTSFYPLTPTPPALHSRIKDELCPS-SLPSPNGQPXXXXXXXXXXXXXN--- 425
GS T P T + D+ S S + +G N
Sbjct: 342 --GSRRTAE----PTTAFESKCRITVDDDDGGSASSGTDDGSSSSSSPTVEASIHGNTVL 395
Query: 426 IHMFCSRRPGLLLSTMRALDNLGLDI-QQAVI----SCFN 460
+ + C R GLL+ + L+ GL I +V+ SC N
Sbjct: 396 LKICCKERRGLLVMILSELEKQGLSIINTSVVPFTDSCLN 435
>UNIPROTKB|Q8S0C6 [details] [associations]
symbol:B1112D09.6 "Uncharacterized protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000138
HSSP:P01106 EMBL:AP003432 EMBL:AK106333
EnsemblPlants:LOC_Os01g39330.1 eggNOG:NOG273636 OMA:LNDSFHT
Uniprot:Q8S0C6
Length = 454
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL 362
++M+ER+RR+KLND + LRS++P SK D+ ++L +A +YLK L I +L
Sbjct: 267 HMMSERKRREKLNDSFHTLRSLLPPCSKKDKTTVLINAAKYLKSLETEITEL 318
>TAIR|locus:2085964 [details] [associations]
symbol:BHLH32 "AT3G25710" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] [GO:0080147 "root hair cell development"
evidence=IMP] [GO:0048364 "root development" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB028607
GO:GO:0003677 GO:GO:0009718 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0016036
HOGENOM:HOG000243133 ProtClustDB:CLSN2689090 EMBL:DQ205679
EMBL:AY058840 EMBL:AY079033 EMBL:AY086383 EMBL:AF488571
IPI:IPI00523379 RefSeq:NP_189199.1 UniGene:At.22148
ProteinModelPortal:Q9LS08 SMR:Q9LS08 IntAct:Q9LS08 STRING:Q9LS08
PRIDE:Q9LS08 EnsemblPlants:AT3G25710.1 GeneID:822159
KEGG:ath:AT3G25710 TAIR:At3g25710 eggNOG:NOG304577 OMA:RERINTH
PhylomeDB:Q9LS08 Genevestigator:Q9LS08 GO:GO:0080147 Uniprot:Q9LS08
Length = 344
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 24/68 (35%), Positives = 44/68 (64%)
Query: 314 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGS 373
AERRRR+++N L LRS++P +K D+AS+L + I+++KEL ++ + + + +
Sbjct: 139 AERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITDTYQVPTECD 198
Query: 374 ALTPSTSF 381
LT +S+
Sbjct: 199 DLTVDSSY 206
>TAIR|locus:2065086 [details] [associations]
symbol:AT2G40200 "AT2G40200" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AF085279 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488586 EMBL:BT029997 EMBL:BT030051
IPI:IPI00547467 PIR:E84826 RefSeq:NP_181549.1 UniGene:At.37090
ProteinModelPortal:Q9XEF0 SMR:Q9XEF0 EnsemblPlants:AT2G40200.1
GeneID:818611 KEGG:ath:AT2G40200 TAIR:At2g40200 eggNOG:NOG318931
HOGENOM:HOG000095217 InParanoid:Q9XEF0 OMA:QPETISD PhylomeDB:Q9XEF0
ProtClustDB:CLSN2913057 ArrayExpress:Q9XEF0 Genevestigator:Q9XEF0
Uniprot:Q9XEF0
Length = 254
Score = 117 (46.2 bits), Expect = 0.00025, P = 0.00025
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 297 GGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELL 356
GG +K + L + +AE+RRR ++N L LR +VP K+D+A++L IE +KEL
Sbjct: 55 GGIEKAES--LSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELK 112
Query: 357 QR 358
Q+
Sbjct: 113 QK 114
>TAIR|locus:2012393 [details] [associations]
symbol:AT1G68810 "AT1G68810" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC011914 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AY072161 EMBL:AY122983
IPI:IPI00517468 PIR:H96712 RefSeq:NP_564944.1 UniGene:At.46879
HSSP:P22415 ProteinModelPortal:Q9S7Y1 SMR:Q9S7Y1
EnsemblPlants:AT1G68810.1 GeneID:843213 KEGG:ath:AT1G68810
TAIR:At1g68810 eggNOG:NOG328059 HOGENOM:HOG000243133
InParanoid:Q9S7Y1 OMA:FVIKASL PhylomeDB:Q9S7Y1
ProtClustDB:CLSN2689090 Genevestigator:Q9S7Y1 Uniprot:Q9S7Y1
Length = 368
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 25/60 (41%), Positives = 41/60 (68%)
Query: 314 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGS 373
AERRRR+++N+ L LRS++P +K D+AS+L + I+++KEL +R + +E P S
Sbjct: 181 AERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKEL-KRETSVISETNLVPTES 239
>UNIPROTKB|Q5SMX4 [details] [associations]
symbol:P0498B01.36 "cDNA clone:J033115I17, full insert
sequence" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008207 EMBL:AP003417 EMBL:HQ858870
EMBL:AK102964 RefSeq:NP_001042293.1 UniGene:Os.32770 GeneID:4327325
KEGG:osa:4327325 eggNOG:NOG253236 OMA:GNNGFMC
ProtClustDB:CLSN2691168 Uniprot:Q5SMX4
Length = 439
Score = 121 (47.7 bits), Expect = 0.00027, P = 0.00027
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 306 GLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL--- 362
G +++++ER+RR+KLND L++V+P SK D+ SIL A EY+K L ++++L
Sbjct: 250 GNQLQHMISERKRREKLNDSFLALKAVLPPGSKKDKTSILIRAREYVKSLESKLSELEEK 309
Query: 363 HNELES---TPPGSALTPSTSFYPLTPTPPA 390
+ ELE+ + P +A P P A
Sbjct: 310 NRELEARLASRPAAAAKNDKGETAAAPAPEA 340
>UNIPROTKB|Q6ZBQ2 [details] [associations]
symbol:P0605H02.26 "BHLH protein family-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 ProtClustDB:CLSN2697427 EMBL:HQ858865 EMBL:AP004620
EMBL:AK100183 RefSeq:NP_001062109.1 UniGene:Os.5093 STRING:Q6ZBQ2
EnsemblPlants:LOC_Os08g38210.1 GeneID:4345899 KEGG:osa:4345899
OMA:KPTHDFL Uniprot:Q6ZBQ2
Length = 508
Score = 118 (46.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 261 DGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRK 320
DG + L+ V GK GGS S + T DQ +K+ E+RRR
Sbjct: 183 DGHAARREVSSSLKELTVRVEGK-GGSCSGSAGT----DQMPNTPR--SKHSATEQRRRS 235
Query: 321 KLNDRLYMLRSVVP-KISKMDRASILGDAIEYLKELLQRINDLHNEL-ESTPPGSALTPS 378
K+NDR +LR ++P K D+AS L + IEY++ L +++ E + + P
Sbjct: 236 KINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPW 295
Query: 379 TSFY 382
T+ Y
Sbjct: 296 TNIY 299
Score = 47 (21.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 436 LLLSTMRALDNLGLDIQQAVIS 457
LL AL+N G+D+ QA IS
Sbjct: 428 LLNKLNHALENSGIDLSQASIS 449
>TAIR|locus:2061634 [details] [associations]
symbol:PIL5 "phytochrome interacting factor 3-like 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0015995 "chlorophyll
biosynthetic process" evidence=IMP] [GO:0010187 "negative
regulation of seed germination" evidence=IGI;IMP] [GO:0010313
"phytochrome binding" evidence=IDA] [GO:0009959 "negative
gravitropism" evidence=IMP;TAS] [GO:0010029 "regulation of seed
germination" evidence=TAS] [GO:0010099 "regulation of
photomorphogenesis" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=IMP] [GO:0010161 "red
light signaling pathway" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0009686 "gibberellin biosynthetic
process" evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010187 GO:GO:0006783 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30
GO:GO:0010161 EMBL:AC006081 HSSP:P61244 HOGENOM:HOG000240264
GO:GO:0015995 GO:GO:0010100 GO:GO:0009740 GO:GO:0009959
EMBL:AF488560 EMBL:AB103113 EMBL:AK228820 EMBL:BT029775
IPI:IPI00527244 IPI:IPI00537020 PIR:A84586 RefSeq:NP_001189559.1
RefSeq:NP_179608.2 RefSeq:NP_849996.1 UniGene:At.43003
UniGene:At.69322 ProteinModelPortal:Q8GZM7 SMR:Q8GZM7 IntAct:Q8GZM7
STRING:Q8GZM7 PRIDE:Q8GZM7 EnsemblPlants:AT2G20180.2
EnsemblPlants:AT2G20180.3 GeneID:816538 KEGG:ath:AT2G20180
TAIR:At2g20180 eggNOG:NOG264707 InParanoid:Q8GZM7 OMA:QEDEMTS
PhylomeDB:Q8GZM7 ProtClustDB:CLSN2690808 Genevestigator:Q8GZM7
GO:GO:0010313 Uniprot:Q8GZM7
Length = 478
Score = 121 (47.7 bits), Expect = 0.00031, P = 0.00031
Identities = 53/221 (23%), Positives = 94/221 (42%)
Query: 143 PQFGTNRTLQFPENGSSSFTGFRGFDENNG----NSLFLNRSKLLRPLETFPSTGAQPTL 198
P TN + P +F+ RG D NNG + L+++ + + PS A P+
Sbjct: 131 PVSSTNESRP-PVRNFMNFSRLRG-DFNNGRGGESGPLLSKAVVRESTQVSPS--ATPSA 186
Query: 199 FQKRAALRKNLGGNEASLGVLGTQNSQLLCGIESDKGKKELTEDNEKKRKLSISDDLEDV 258
+ L + G ++S V G G + KGK + + S +
Sbjct: 187 AASESGLTRRTDGTDSS-AVAGG-------GAYNRKGKAVAMTAPAIEITGTSSSVVSKS 238
Query: 259 SVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRR 318
++ N D E S + ++ K + + NL +ER+R
Sbjct: 239 EIEPEKTNVDDRKRKEREATTTDETESRSEETKQARVSTTSTK-RSRAAEVHNL-SERKR 296
Query: 319 RKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRI 359
R ++N+R+ L+ ++P+ +K D+AS+L +AIEY+K L +I
Sbjct: 297 RDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQI 337
>TAIR|locus:2117788 [details] [associations]
symbol:AT4G28800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 IPI:IPI00517558
IPI:IPI01020410 PIR:T04519 RefSeq:NP_194609.5 UniGene:At.71648
ProteinModelPortal:Q9SVU7 SMR:Q9SVU7 GeneID:829001
KEGG:ath:AT4G28800 TAIR:At4g28800 InParanoid:Q9SVU7
Genevestigator:Q9SVU7 Uniprot:Q9SVU7
Length = 445
Score = 120 (47.3 bits), Expect = 0.00036, P = 0.00035
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 298 GDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ 357
G K+ + +AERRRR+K+N+++ L+ ++P+ +K + S L DAIEY+K L
Sbjct: 247 GSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQS 306
Query: 358 RINDLHNELESTPPGSALTPSTSFYPLTPTP 388
+I + + + + P + P P
Sbjct: 307 QIQGMMSPMMNAGNTQQFMPHMAMDMNRPPP 337
>TAIR|locus:2117773 [details] [associations]
symbol:AT4G28790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 EMBL:BT015828
EMBL:BT020214 IPI:IPI00521625 IPI:IPI00529771 IPI:IPI00915578
PIR:T04520 RefSeq:NP_194608.3 RefSeq:NP_974634.1 UniGene:At.31988
ProteinModelPortal:Q9SVU6 SMR:Q9SVU6 PRIDE:Q9SVU6
EnsemblPlants:AT4G28790.1 GeneID:829000 KEGG:ath:AT4G28790
TAIR:At4g28790 HOGENOM:HOG000240264 InParanoid:Q9SVU6
PhylomeDB:Q9SVU6 ProtClustDB:CLSN2680993 Genevestigator:Q9SVU6
Uniprot:Q9SVU6
Length = 413
Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 299 DQKGKKKGLPA-KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ 357
D K+ A + ++ERRRR+K+N+ + L+ ++P+ +K DR+S+L D IEY+K L
Sbjct: 269 DSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQS 328
Query: 358 RI 359
+I
Sbjct: 329 QI 330
>UNIPROTKB|Q5KQG3 [details] [associations]
symbol:OSJNBb0086G17.12 "Putative uncharacterized protein
OSJNBb0086G17.12" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238962 OMA:SHIAVER EMBL:AC144455
ProteinModelPortal:Q5KQG3 EnsemblPlants:LOC_Os05g51820.1
Gramene:Q5KQG3 Uniprot:Q5KQG3
Length = 227
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDLHNELE- 367
++ ER RR+++ND L +LRS+ P I + D+ASI+G AI+++KEL + L + +
Sbjct: 3 HIAVERNRRRQMNDHLKVLRSLTPAFYIKRGDQASIIGGAIDFIKELQTLLQSLEAQKKR 62
Query: 368 -STPPGSALTPST 379
P ++P++
Sbjct: 63 RQQPQAHLISPAS 75
>TAIR|locus:2178560 [details] [associations]
symbol:bHLH071 "AT5G46690" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0007275 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AB016882
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238962
EMBL:AK221613 EMBL:BT025663 EMBL:AY087479 EMBL:AF488603
IPI:IPI00543871 RefSeq:NP_568666.1 UniGene:At.29935
ProteinModelPortal:Q56XR0 SMR:Q56XR0 IntAct:Q56XR0
EnsemblPlants:AT5G46690.1 GeneID:834712 KEGG:ath:AT5G46690
TAIR:At5g46690 eggNOG:NOG262411 InParanoid:Q56XR0 OMA:THANIRI
PhylomeDB:Q56XR0 ProtClustDB:CLSN2917741 Genevestigator:Q56XR0
Uniprot:Q56XR0
Length = 327
Score = 109 (43.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDLHNELES 368
++ ER RR+++N L +LRS++P+ K D+ASI+G AI+++KEL ++ L +
Sbjct: 90 HIAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHH 149
Query: 369 TPP-GSALTPSTS 380
++T STS
Sbjct: 150 NAKLNQSVTSSTS 162
Score = 48 (22.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 278 VEEMGKNGGSIS-NAISTITGGDQKGKKKGLPAKNLMAERRRRK 320
+E + +N IS N IS I+ + +++ PA N +RRRRK
Sbjct: 31 LEPLPENDVIISKNTISEISNQEPPPQRQP-PATNRGKKRRRRK 73
>UNIPROTKB|Q6ZGS3 [details] [associations]
symbol:OJ1148_D05.9 "Putative basic-helix-loop-helix
transcription factor" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:CM000139 eggNOG:NOG262411 EMBL:AP004118
EnsemblPlants:LOC_Os02g46560.1 OMA:KRELATY Uniprot:Q6ZGS3
Length = 373
Score = 117 (46.2 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 24/63 (38%), Positives = 44/63 (69%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDLHNELES 368
++ ER RR+++N+ L +LRS++P+ + + D+ASI+G AIE++KEL Q++ L + +
Sbjct: 92 HIAVERNRRRQMNEYLAILRSLMPEPYVQRGDQASIVGGAIEFVKELEQQLQSLEAQKRT 151
Query: 369 TPP 371
P
Sbjct: 152 LLP 154
Score = 41 (19.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 425 NIHMFCSRRPGLLLSTMRALDNLGLDI 451
++ + RRPG LL + L L L +
Sbjct: 271 SVRVMSPRRPGQLLKMIAGLQALRLTV 297
>ASPGD|ASPL0000062836 [details] [associations]
symbol:AN1114 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:AACD01000016 EMBL:BN001308
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG242942
RefSeq:XP_658718.1 ProteinModelPortal:Q5BEB6
EnsemblFungi:CADANIAT00001514 GeneID:2876891 KEGG:ani:AN1114.2
HOGENOM:HOG000206916 OMA:VNYLEKC Uniprot:Q5BEB6
Length = 393
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 39/142 (27%), Positives = 65/142 (45%)
Query: 275 NNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVP 334
N K G GG + T G+K + + ERRRR K+N+ L++++P
Sbjct: 131 NTKAAANGAAGGGSKKKQPSATSA--AGRKIARKTAHSLIERRRRSKMNEEFSTLKNMIP 188
Query: 335 KIS--KMDRASILGDAIEYLKELLQRINDL-----HNELESTPPG--SA-LTPSTSFYPL 384
+M + +IL +I+Y+ L + I DL H + PP SA L+P++ +
Sbjct: 189 ACRGHEMHKLAILQASIDYVNYLEKCIQDLKAPGDHEHRPAPPPSLPSAPLSPTSPEFLG 248
Query: 385 TPTPPALHSRIKDELCPSSLPS 406
P + + E+ P S+PS
Sbjct: 249 DPQGSTYSASVSPEVHPESIPS 270
>UNIPROTKB|Q6ZA99 [details] [associations]
symbol:P0431A03.9 "Os08g0432800 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:AP008214 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP004666 EMBL:AK109616 RefSeq:NP_001061870.1
UniGene:Os.56209 EnsemblPlants:LOC_Os08g33590.1 GeneID:4345648
KEGG:osa:4345648 eggNOG:NOG311977 OMA:TSAMMED
ProtClustDB:CLSN2697339 Uniprot:Q6ZA99
Length = 345
Score = 116 (45.9 bits), Expect = 0.00064, P = 0.00064
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 314 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL 355
AERRRR+++N L LRS++P +K D+AS+L + IE++KEL
Sbjct: 128 AERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKEL 169
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 119 (46.9 bits), Expect = 0.00065, P = 0.00065
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 298 GDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL-L 356
G + K+ + ++ERRRR ++N+++ L+ ++P +K+D+AS+L +AIEYLK L L
Sbjct: 304 GTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQL 363
Query: 357 Q-RINDLHNELESTPPGSALTPSTSFYPLTPTPPALH 392
Q ++ + L PP L P T+ L PP H
Sbjct: 364 QVQMMSMGTGL-CIPP--MLLP-TAMQHLQ-IPPMAH 395
>UNIPROTKB|Q5JNS0 [details] [associations]
symbol:P0706B05.43 "Os01g0293100 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:AP002482 RefSeq:NP_001042795.1 UniGene:Os.54828 GeneID:4325164
KEGG:osa:4325164 HOGENOM:HOG000071096 OMA:HPQCELL
ProtClustDB:CLSN2691354 Uniprot:Q5JNS0
Length = 379
Score = 103 (41.3 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 283 KNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRA 342
++GG + +T G G G+ K E++RR +L ++ L ++P +K DRA
Sbjct: 155 RSGGGRKRSRAT-AGFHGGGPANGVEKK----EKQRRLRLTEKYNALMLLIPNRTKEDRA 209
Query: 343 SILGDAIEYLKELLQRINDL 362
+++ DAIEY++EL + + +L
Sbjct: 210 TVISDAIEYIQELGRTVEEL 229
Score = 56 (24.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 425 NIHMFCSRRPGLLLSTMRALDNLGLDI 451
NI + RR G L + RALD+L LD+
Sbjct: 311 NIKLTKRRRDGCLAAASRALDDLRLDL 337
>UNIPROTKB|Q5SMX2 [details] [associations]
symbol:P0498B01.25 "Basic helix-loop-helix protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003417 ProteinModelPortal:Q5SMX2
EnsemblPlants:LOC_Os01g09930.1 Gramene:Q5SMX2 HOGENOM:HOG000237612
OMA:IRAREHI Uniprot:Q5SMX2
Length = 412
Score = 117 (46.2 bits), Expect = 0.00067, P = 0.00067
Identities = 26/62 (41%), Positives = 45/62 (72%)
Query: 310 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL---HNEL 366
+++++ER+RR+KLND L++V+P SK D+ASIL A E++K L ++++L + EL
Sbjct: 184 QHMISERKRREKLNDSFVALKAVLPTGSKKDKASILIRAREHIKSLESKLSELEEKNREL 243
Query: 367 ES 368
E+
Sbjct: 244 EA 245
>TAIR|locus:2152551 [details] [associations]
symbol:AT5G48560 "AT5G48560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB015468 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 eggNOG:NOG283912
ProtClustDB:CLSN2684837 EMBL:AF488610 EMBL:BT002945 EMBL:BT005637
IPI:IPI00543091 RefSeq:NP_199667.1 UniGene:At.43769
ProteinModelPortal:Q9FJL4 SMR:Q9FJL4 IntAct:Q9FJL4 PaxDb:Q9FJL4
PRIDE:Q9FJL4 EnsemblPlants:AT5G48560.1 GeneID:834912
KEGG:ath:AT5G48560 TAIR:At5g48560 InParanoid:Q9FJL4 OMA:SASCYAT
PhylomeDB:Q9FJL4 Genevestigator:Q9FJL4 Uniprot:Q9FJL4
Length = 498
Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00070
Identities = 60/254 (23%), Positives = 113/254 (44%)
Query: 123 NGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDE--NNGNSLFLNRS 180
N + + N T +DP F R +F GS SF G + NNGN++ N
Sbjct: 135 NSNSQMMMNRTTPLTEFSADPGFA-ERAARFSCFGSRSFNGRTNTNLPINNGNNMVNNSG 193
Query: 181 KLLRPLETFPSTGA--QPTLFQ--KRAALRKNLGGNEASLGVLGTQNSQLLCGIESDK-G 235
KL R T P+ A P + + + RK++ ++ + T + ++K G
Sbjct: 194 KLTRVSST-PALKALVSPEVTPGGEFSRKRKSVPKGKSKENPISTASPSPSFSKTAEKNG 252
Query: 236 KKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTI 295
K ++ +E+K ++ +D +G G S+ N K E K+ +
Sbjct: 253 GKGGSKSSEEKGGKRRREEEDDEEEEGEGEGNKSN----NTKPPEPPKDYIHV------- 301
Query: 296 TGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMD-RASILGDAIEYLKE 354
+ ++ + +AER RR+K+ +R+ +L+ +VP +K+ +A +L + I Y++
Sbjct: 302 -----RARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQS 356
Query: 355 LLQRINDLHNELES 368
L +++ L +L S
Sbjct: 357 LQRQVEFLSMKLSS 370
>UNIPROTKB|Q9FTQ1 [details] [associations]
symbol:P0665D10.21 "DNA binding protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:AP002861 EMBL:AP002745 RefSeq:NP_001042409.1 UniGene:Os.26488
STRING:Q9FTQ1 GeneID:4324583 KEGG:osa:4324583 OMA:VRFTFLI
ProtClustDB:CLSN2691217 Uniprot:Q9FTQ1
Length = 267
Score = 105 (42.0 bits), Expect = 0.00075, Sum P(2) = 0.00074
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 297 GGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL 355
GG ++ K + AERRRR+++N L LR++VP KMD+A++L + + ++K+L
Sbjct: 68 GGGREEKAAMALKSHSEAERRRRERINAHLATLRTMVPCTDKMDKAALLAEVVGHVKKL 126
Score = 48 (22.0 bits), Expect = 0.00075, Sum P(2) = 0.00074
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 430 CSRRPGLLLSTMRALDNLGLDIQQAVISCFNG 461
C R L + RAL LGL++ + ++ G
Sbjct: 170 CDDRADLFVDVKRALQPLGLEVVGSEVTTLGG 201
>UNIPROTKB|Q69MD0 [details] [associations]
symbol:OSJNBb0019B14.23 "BHLH-like protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP005755
ProteinModelPortal:Q69MD0 EnsemblPlants:LOC_Os09g28900.1
Gramene:Q69MD0 OMA:EMLGAEC Uniprot:Q69MD0
Length = 215
Score = 111 (44.1 bits), Expect = 0.00075, P = 0.00075
Identities = 19/42 (45%), Positives = 33/42 (78%)
Query: 314 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKEL 355
AER+RR+++N L LR +VP S+MD+A++LG+ + Y+++L
Sbjct: 35 AERKRRERINAHLDTLRGLVPSASRMDKAALLGEVVRYVRKL 76
>UNIPROTKB|Q7XLY9 [details] [associations]
symbol:OSJNBa0086O06.20 "OSJNBa0086O06.20 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AL662981 UniGene:Os.52382 HOGENOM:HOG000238962
ProteinModelPortal:Q7XLY9 EnsemblPlants:LOC_Os04g50090.1
Gramene:Q7XLY9 OMA:RFFTYPQ Uniprot:Q7XLY9
Length = 362
Score = 108 (43.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 22/54 (40%), Positives = 40/54 (74%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDL 362
++ ER RR+++N+ L +LRS++P+ + + D+ASI+G AI+++KEL Q + L
Sbjct: 97 HIAVERNRRRQMNEYLAVLRSLMPESYVHRGDQASIVGGAIDFVKELEQLLQSL 150
Score = 49 (22.3 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 425 NIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAM 464
+I + +RRPG LL + L L L + ++ A+
Sbjct: 247 SIRVMAARRPGQLLKMVAGLQALRLTVLHLNVTALGSLAL 286
>TAIR|locus:2163163 [details] [associations]
symbol:PIF7 "AT5G61270" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0009416
"response to light stimulus" evidence=IDA] [GO:0009704
"de-etiolation" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016607
GO:GO:0003700 GO:GO:0006351 GO:GO:0003690 GO:GO:0009585
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB010073 HSSP:P22415
GO:GO:0009704 EMBL:AF488604 EMBL:BX831447 EMBL:AY568656
EMBL:AJ630484 EMBL:AK220640 IPI:IPI00537261 IPI:IPI00656604
RefSeq:NP_001032117.1 RefSeq:NP_200935.2 UniGene:At.29114
ProteinModelPortal:Q570R7 SMR:Q570R7 IntAct:Q570R7 STRING:Q570R7
EnsemblPlants:AT5G61270.1 GeneID:836248 KEGG:ath:AT5G61270
TAIR:At5g61270 eggNOG:NOG286182 HOGENOM:HOG000097081
InParanoid:Q9FLK6 OMA:HNESERR PhylomeDB:Q570R7
ProtClustDB:CLSN2681114 Genevestigator:Q570R7 Uniprot:Q570R7
Length = 366
Score = 118 (46.6 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 298 GDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQ 357
G G++ A + +ERRRR ++N R+ L+ ++P SK D+ SIL D IE+LK+L
Sbjct: 158 GRSNGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQA 217
Query: 358 RINDLHNELESTPPGSALTP 377
++ + L + P + P
Sbjct: 218 QVQFM--SLRANLPQQMMIP 235
Score = 38 (18.4 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 232 SDKGKKELTEDNEKKRKLSISDDLE 256
S+ G KELT +N + + D++E
Sbjct: 2 SNYGVKELTWENGQLTVHGLGDEVE 26
>UNIPROTKB|Q6YTU1 [details] [associations]
symbol:P0419H09.4 "cDNA clone:002-131-D10, full insert
sequence" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:AP004213
EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238962 EMBL:HQ858861 EMBL:AP005918 EMBL:AK107626
RefSeq:NP_001062077.1 UniGene:Os.55174
EnsemblPlants:LOC_Os08g37730.1 GeneID:4345867 KEGG:osa:4345867
eggNOG:NOG250596 ProtClustDB:CLSN2919896 Uniprot:Q6YTU1
Length = 363
Score = 115 (45.5 bits), Expect = 0.00090, P = 0.00090
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 311 NLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDL----HN 364
++ ER RRK++N+ L +LRS++P + + D+ASI+G AI Y+KE+ Q + L H
Sbjct: 142 HIAVERNRRKQMNEYLAVLRSLMPASYVQRGDQASIIGGAINYVKEMEQLLQSLEAHRHA 201
Query: 365 ELESTPPGSALTPSTSFY 382
T +AL P F+
Sbjct: 202 RRARTDAAAAL-PFAGFF 218
>TAIR|locus:2172209 [details] [associations]
symbol:AT5G62610 "AT5G62610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 EMBL:AB020751 HOGENOM:HOG000238007 EMBL:AY072104
EMBL:AY123023 EMBL:AY084578 EMBL:AF488611 IPI:IPI00518025
RefSeq:NP_201067.1 UniGene:At.24534 UniGene:At.24682
ProteinModelPortal:Q9LV17 SMR:Q9LV17 PaxDb:Q9LV17 PRIDE:Q9LV17
EnsemblPlants:AT5G62610.1 GeneID:836382 KEGG:ath:AT5G62610
GeneFarm:2935 TAIR:At5g62610 eggNOG:NOG269855 InParanoid:Q9LV17
OMA:DDSSKMV PhylomeDB:Q9LV17 ProtClustDB:CLSN2916786
Genevestigator:Q9LV17 Uniprot:Q9LV17
Length = 281
Score = 113 (44.8 bits), Expect = 0.00091, P = 0.00091
Identities = 42/174 (24%), Positives = 83/174 (47%)
Query: 230 IESDKGKKELTEDNEKKRKLSISDDLE-DVSVDGSGLNYDSDDFLENNKVEEMGKNGGSI 288
+ S EL E +KKRKL S+ D S+ G ++ +K E KN
Sbjct: 91 VSSSSSGNELKESGDKKRKLCGSESGNGDGSMRPEG---ETSSGGGGSKATEQ-KNKPEP 146
Query: 289 SNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKM-DRASILGD 347
+ ++G+ ++ +AER RR+K+++++ L+ ++P +K+ +A +L +
Sbjct: 147 PKDYIHVRA--RRGQATD---RHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDE 201
Query: 348 AIEYLKELLQRINDLHNELESTPPGSALTPSTSFYP---LTPTPPALHSRIKDE 398
I Y++ L +++ L +LE G++ P+ +P L P +H I ++
Sbjct: 202 IINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQ 255
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 497 459 0.00095 118 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 98
No. of states in DFA: 607 (65 KB)
Total size of DFA: 257 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.30u 0.12s 49.42t Elapsed: 00:00:02
Total cpu time: 49.31u 0.12s 49.43t Elapsed: 00:00:02
Start: Mon May 20 23:06:48 2013 End: Mon May 20 23:06:50 2013