Query 047004
Match_columns 497
No_of_seqs 252 out of 1254
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 6.5E-16 2.2E-20 128.4 3.0 64 307-370 6-70 (82)
2 4ati_A MITF, microphthalmia-as 99.5 2.3E-14 7.8E-19 126.7 6.9 69 301-369 21-93 (118)
3 1an4_A Protein (upstream stimu 99.4 2.7E-14 9.3E-19 113.3 3.4 53 307-359 5-63 (65)
4 1hlo_A Protein (transcription 99.4 8.2E-14 2.8E-18 114.9 5.5 63 308-370 13-77 (80)
5 1nkp_B MAX protein, MYC proto- 99.4 1.1E-13 3.9E-18 114.6 5.5 63 308-370 3-67 (83)
6 4h10_B Circadian locomoter out 99.4 6.4E-14 2.2E-18 114.0 3.2 57 307-363 8-65 (71)
7 1a0a_A BHLH, protein (phosphat 99.4 4.5E-14 1.5E-18 112.2 1.3 52 308-359 3-61 (63)
8 1nkp_A C-MYC, MYC proto-oncoge 99.4 2.1E-13 7.1E-18 114.9 4.8 62 308-369 7-71 (88)
9 1nlw_A MAD protein, MAX dimeri 99.3 1E-12 3.6E-17 108.9 6.0 62 309-370 3-67 (80)
10 4h10_A ARYL hydrocarbon recept 99.3 1.2E-13 4.2E-18 112.8 0.3 53 305-357 7-63 (73)
11 3u5v_A Protein MAX, transcript 99.2 3.1E-12 1.1E-16 105.2 3.5 56 308-363 6-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.0 1.3E-10 4.5E-15 93.7 1.6 53 307-359 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 98.9 1E-09 3.5E-14 86.4 5.1 52 309-360 4-58 (60)
14 4f3l_A Mclock, circadian locom 98.8 1.5E-09 5.1E-14 109.9 5.1 55 304-358 9-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 3.7E-09 1.3E-13 108.4 2.9 57 302-358 8-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 5E-08 1.7E-12 78.6 1.0 45 313-357 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.3 6.6E-07 2.3E-11 74.7 5.8 49 319-367 4-56 (83)
18 4aya_A DNA-binding protein inh 97.8 3E-05 1E-09 66.5 5.7 48 314-361 32-82 (97)
19 1zpv_A ACT domain protein; str 96.7 0.011 3.8E-07 47.6 10.0 68 422-492 4-71 (91)
20 1u8s_A Glycine cleavage system 96.0 0.02 6.8E-07 52.7 8.4 66 423-492 6-71 (192)
21 2nyi_A Unknown protein; protei 95.7 0.025 8.6E-07 52.6 8.0 68 423-491 5-73 (195)
22 2ko1_A CTR148A, GTP pyrophosph 94.8 0.25 8.5E-06 38.9 9.9 48 423-470 5-52 (88)
23 2nyi_A Unknown protein; protei 94.5 0.1 3.4E-06 48.5 8.1 66 423-492 93-164 (195)
24 1u8s_A Glycine cleavage system 94.2 0.22 7.6E-06 45.6 9.6 67 423-492 93-167 (192)
25 3p96_A Phosphoserine phosphata 92.3 0.3 1E-05 49.6 8.0 72 423-496 12-83 (415)
26 3o1l_A Formyltetrahydrofolate 89.8 1 3.5E-05 45.2 8.9 69 422-492 21-91 (302)
27 3n0v_A Formyltetrahydrofolate 89.3 1.6 5.5E-05 43.4 9.8 71 423-496 8-80 (286)
28 3obi_A Formyltetrahydrofolate 88.7 1.4 4.9E-05 43.8 9.0 71 423-495 6-78 (288)
29 3lou_A Formyltetrahydrofolate 88.7 1.4 4.8E-05 44.0 8.9 71 422-492 9-81 (292)
30 3nrb_A Formyltetrahydrofolate 84.2 4.3 0.00015 40.3 9.6 71 422-496 6-78 (287)
31 2jhe_A Transcription regulator 83.8 1.8 6.3E-05 37.6 6.1 37 425-462 2-38 (190)
32 2f1f_A Acetolactate synthase i 75.5 6.6 0.00023 36.0 7.1 65 424-492 4-70 (164)
33 2f06_A Conserved hypothetical 72.8 22 0.00076 30.5 9.6 59 426-493 75-133 (144)
34 2pc6_A Probable acetolactate s 68.1 8.1 0.00028 35.6 5.9 65 424-492 5-71 (165)
35 1y7p_A Hypothetical protein AF 66.6 14 0.00049 35.7 7.5 64 423-492 4-72 (223)
36 2fgc_A Acetolactate synthase, 53.9 29 0.001 32.8 7.1 63 424-490 30-94 (193)
37 2wt7_A Proto-oncogene protein 53.1 20 0.0007 27.6 4.9 41 315-368 1-41 (63)
38 2f06_A Conserved hypothetical 47.2 1.2E+02 0.004 25.8 9.5 60 425-493 8-67 (144)
39 2er8_A Regulatory protein Leu3 36.3 25 0.00087 26.8 3.1 21 350-370 49-69 (72)
40 3he4_B Synzip5; heterodimeric 33.0 48 0.0016 24.0 3.7 26 344-369 4-29 (46)
41 1hwt_C Protein (heme activator 27.7 28 0.00094 27.1 2.0 22 349-370 57-78 (81)
42 1zme_C Proline utilization tra 27.7 30 0.001 26.1 2.1 20 350-369 44-63 (70)
43 2jee_A YIIU; FTSZ, septum, coi 27.4 41 0.0014 27.8 3.0 25 345-369 15-39 (81)
44 2l5g_A GPS2 protein, G protein 26.2 69 0.0023 22.9 3.5 30 339-368 4-33 (38)
45 1pd7_B MAD1; PAH2, SIN3, eukar 25.3 69 0.0024 21.2 3.1 20 339-358 2-21 (26)
46 2ke4_A CDC42-interacting prote 25.0 92 0.0032 26.3 4.9 60 309-369 8-88 (98)
47 2lqj_A Mg2+ transport protein; 23.4 2.8E+02 0.0097 22.8 7.5 37 423-459 8-46 (94)
48 1pyi_A Protein (pyrimidine pat 21.0 1.8E+02 0.0062 23.0 5.8 22 350-371 48-69 (96)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.57 E-value=6.5e-16 Score=128.42 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=59.7
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCCC-CcCCccchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 047004 307 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI-SKMDRASILGDAIEYLKELLQRINDLHNELESTP 370 (497)
Q Consensus 307 ~~~~H~~~ERrRR~kin~~~~~LrsLVP~~-~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~esl~ 370 (497)
++..|+.+||+||++||+.|.+|+++||.. .|++|++||.+||+||++|+.+++.|+.+.+.+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999987 8999999999999999999999999999987664
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.49 E-value=2.3e-14 Score=126.74 Aligned_cols=69 Identities=23% Similarity=0.448 Sum_probs=53.0
Q ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHhcCCCCC----cCCccchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 047004 301 KGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKIS----KMDRASILGDAIEYLKELLQRINDLHNELEST 369 (497)
Q Consensus 301 k~rk~~~~~~H~~~ERrRR~kin~~~~~LrsLVP~~~----K~dKasIL~eAI~YIk~Lq~~v~~L~~e~esl 369 (497)
..+++.++..|+.+||+||++||++|.+|++|||.+. |++|++||.+||+||++||++++.|+.+....
T Consensus 21 ~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~ 93 (118)
T 4ati_A 21 LAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 93 (118)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556789999999999999999999999999763 77899999999999999999999998865443
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=2.7e-14 Score=113.28 Aligned_cols=53 Identities=34% Similarity=0.511 Sum_probs=48.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCCCC------cCCccchHHHHHHHHHHHHHHH
Q 047004 307 LPAKNLMAERRRRKKLNDRLYMLRSVVPKIS------KMDRASILGDAIEYLKELLQRI 359 (497)
Q Consensus 307 ~~~~H~~~ERrRR~kin~~~~~LrsLVP~~~------K~dKasIL~eAI~YIk~Lq~~v 359 (497)
++..|+.+||+||++||+.|.+|++|||.+. |++|++||.+||+||++||++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999864 7899999999999999999764
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=8.2e-14 Score=114.93 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=58.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCCC--CcCCccchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 047004 308 PAKNLMAERRRRKKLNDRLYMLRSVVPKI--SKMDRASILGDAIEYLKELLQRINDLHNELESTP 370 (497)
Q Consensus 308 ~~~H~~~ERrRR~kin~~~~~LrsLVP~~--~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~esl~ 370 (497)
+..|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||++|++++++|+.+++.+.
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999975 6999999999999999999999999999988763
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.42 E-value=1.1e-13 Score=114.61 Aligned_cols=63 Identities=29% Similarity=0.451 Sum_probs=57.5
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCC--CCcCCccchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 047004 308 PAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRINDLHNELESTP 370 (497)
Q Consensus 308 ~~~H~~~ERrRR~kin~~~~~LrsLVP~--~~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~esl~ 370 (497)
+..|+.+||+||.+||+.|..|+++||. ..|++|++||..||+||++|++++++|+.+++.+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999997 47999999999999999999999999888876653
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.41 E-value=6.4e-14 Score=113.97 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=51.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCCC-CcCCccchHHHHHHHHHHHHHHHHHHH
Q 047004 307 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI-SKMDRASILGDAIEYLKELLQRINDLH 363 (497)
Q Consensus 307 ~~~~H~~~ERrRR~kin~~~~~LrsLVP~~-~K~dKasIL~eAI~YIk~Lq~~v~~L~ 363 (497)
++.+|+.+||+||++||+.|.+|++|||.. .|+||++||..||+||++||.++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 347899999999999999999999999974 699999999999999999999887553
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.39 E-value=4.5e-14 Score=112.19 Aligned_cols=52 Identities=27% Similarity=0.345 Sum_probs=47.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCCC-------CcCCccchHHHHHHHHHHHHHHH
Q 047004 308 PAKNLMAERRRRKKLNDRLYMLRSVVPKI-------SKMDRASILGDAIEYLKELLQRI 359 (497)
Q Consensus 308 ~~~H~~~ERrRR~kin~~~~~LrsLVP~~-------~K~dKasIL~eAI~YIk~Lq~~v 359 (497)
+.+|+.+||+||++||..|..|++|||.+ .|.+||+||+.||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999953 56789999999999999999765
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=2.1e-13 Score=114.88 Aligned_cols=62 Identities=24% Similarity=0.404 Sum_probs=55.5
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCCccchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 047004 308 PAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIEYLKELLQRINDLHNELEST 369 (497)
Q Consensus 308 ~~~H~~~ERrRR~kin~~~~~LrsLVP~~---~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~esl 369 (497)
+..|+..||+||++||+.|..|+++||.. .|++|++||.+||+||++|+.+.+.|..+++.+
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999974 599999999999999999999988877665443
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.33 E-value=1e-12 Score=108.91 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=56.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCCccchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 047004 309 AKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIEYLKELLQRINDLHNELESTP 370 (497)
Q Consensus 309 ~~H~~~ERrRR~kin~~~~~LrsLVP~~---~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~esl~ 370 (497)
..|+..||+||..||+.|..|+++||.. .|.+|++||..|++||++|+++.+.|+.+++.+.
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999964 6889999999999999999999999998876653
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=1.2e-13 Score=112.80 Aligned_cols=53 Identities=32% Similarity=0.442 Sum_probs=48.2
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcCCCC----CcCCccchHHHHHHHHHHHHH
Q 047004 305 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIEYLKELLQ 357 (497)
Q Consensus 305 ~~~~~~H~~~ERrRR~kin~~~~~LrsLVP~~----~K~dKasIL~eAI~YIk~Lq~ 357 (497)
+.++.+|+.+||+||++||+.|.+|++|||.+ .|+||++||..||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 33457899999999999999999999999965 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.23 E-value=3.1e-12 Score=105.19 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=47.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhcCCC---CCcC-CccchHHHHHHHHHHHHHHHHHHH
Q 047004 308 PAKNLMAERRRRKKLNDRLYMLRSVVPK---ISKM-DRASILGDAIEYLKELLQRINDLH 363 (497)
Q Consensus 308 ~~~H~~~ERrRR~kin~~~~~LrsLVP~---~~K~-dKasIL~eAI~YIk~Lq~~v~~L~ 363 (497)
+..|+..||+||.+||+.|.+||.+||. ..|. .|++||..||+||+.||+++++++
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999994 3455 688999999999999999988653
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.95 E-value=1.3e-10 Score=93.69 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=48.1
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCC--CCcCCccchHHHHHHHHHHHHHHH
Q 047004 307 LPAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIEYLKELLQRI 359 (497)
Q Consensus 307 ~~~~H~~~ERrRR~kin~~~~~LrsLVP~--~~K~dKasIL~eAI~YIk~Lq~~v 359 (497)
.+..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||+.|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999996 368999999999999999999754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.91 E-value=1e-09 Score=86.43 Aligned_cols=52 Identities=33% Similarity=0.350 Sum_probs=47.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCCccchHHHHHHHHHHHHHHHH
Q 047004 309 AKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIEYLKELLQRIN 360 (497)
Q Consensus 309 ~~H~~~ERrRR~kin~~~~~LrsLVP~~---~K~dKasIL~eAI~YIk~Lq~~v~ 360 (497)
..|+..||+|+..||+.|..||.+||.. .|++|..||..||+||+.|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999964 589999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.85 E-value=1.5e-09 Score=109.94 Aligned_cols=55 Identities=25% Similarity=0.465 Sum_probs=42.6
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHhcCC-CCCcCCccchHHHHHHHHHHHHHH
Q 047004 304 KKGLPAKNLMAERRRRKKLNDRLYMLRSVVP-KISKMDRASILGDAIEYLKELLQR 358 (497)
Q Consensus 304 k~~~~~~H~~~ERrRR~kin~~~~~LrsLVP-~~~K~dKasIL~eAI~YIk~Lq~~ 358 (497)
++.++.+|+.+||+||++||+.|.+|++||| ...|+||++||..||.||+.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3444578999999999999999999999999 567999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.71 E-value=3.7e-09 Score=108.37 Aligned_cols=57 Identities=32% Similarity=0.437 Sum_probs=49.4
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHhcCC----CCCcCCccchHHHHHHHHHHHHHH
Q 047004 302 GKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVP----KISKMDRASILGDAIEYLKELLQR 358 (497)
Q Consensus 302 ~rk~~~~~~H~~~ERrRR~kin~~~~~LrsLVP----~~~K~dKasIL~eAI~YIk~Lq~~ 358 (497)
.|.+.++.+|+.+||+||++||+.|.+|++||| ...|+||++||..||.|||.|+..
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 344555689999999999999999999999999 568999999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.40 E-value=5e-08 Score=78.63 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC---CcCCccchHHHHHHHHHHHHH
Q 047004 313 MAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIEYLKELLQ 357 (497)
Q Consensus 313 ~~ERrRR~kin~~~~~LrsLVP~~---~K~dKasIL~eAI~YIk~Lq~ 357 (497)
..||+|+..||+.|..||.+||.. .|++|..||.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 568999999999999999999964 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.32 E-value=6.6e-07 Score=74.71 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCCC----CcCCccchHHHHHHHHHHHHHHHHHHHHhhh
Q 047004 319 RKKLNDRLYMLRSVVPKI----SKMDRASILGDAIEYLKELLQRINDLHNELE 367 (497)
Q Consensus 319 R~kin~~~~~LrsLVP~~----~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~e 367 (497)
|..||++|.+|..|||.+ .|.+|.+||..|++||++||++++.+.++..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999964 5789999999999999999998888777643
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.76 E-value=3e-05 Score=66.47 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---CCcCCccchHHHHHHHHHHHHHHHHH
Q 047004 314 AERRRRKKLNDRLYMLRSVVPK---ISKMDRASILGDAIEYLKELLQRIND 361 (497)
Q Consensus 314 ~ERrRR~kin~~~~~LrsLVP~---~~K~dKasIL~eAI~YIk~Lq~~v~~ 361 (497)
.||.|=..||+-|..||.+||. ..|+.|..+|.-||+||+.|++-++.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4577778999999999999996 36889999999999999999986653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.73 E-value=0.011 Score=47.59 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=56.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 422 RAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 422 ~~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
..+.|.|.|.+++|++.+|..+|-+.|+.|.+.+.....+.+.-.+.++.. + ....++|.+.|...+.
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~-~--~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-E--KQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-S--CCCHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC-C--CCCHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999998888877776666532 2 4578999999987653
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.99 E-value=0.02 Score=52.71 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
.+.|.|.|++++|++..|..+|.+.|++|+.+++.+..+.+.-.+.+... ....++|++.|...++
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~----~~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS----PSNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC----CCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999888887777766431 1356788888887664
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.75 E-value=0.025 Score=52.65 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeeecCC-cccCHHHHHHHHHHhh
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEG-QDVHPEQIKAVLLDSA 491 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~ng~vl~~f~aeq~keg-~~v~~eqIk~~L~~~a 491 (497)
.+.|.|.|++|+|++..|..+|.++|+.|+.|.+.+..+.+.-.+.+.. ... .....++|++.|...+
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~-~~~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSL-NAKDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SSSSSHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEe-cCccchhHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988887666666642 211 0012577887776554
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.76 E-value=0.25 Score=38.87 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=39.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEe
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAE 470 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~ng~vl~~f~ae 470 (497)
.+.|.|.+.+++|+|.+|..+|.+.|+.|.+..+...++.+..++.++
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~ 52 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence 356888999999999999999999999999999988766444444444
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.51 E-value=0.1 Score=48.53 Aligned_cols=66 Identities=9% Similarity=0.027 Sum_probs=51.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFN------GFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~n------g~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
.+.|.|.|++++|++..|-.+|-++|+.|..+...+.. +.++-.+.+.. .+ ... ++|++.|...+.
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~-~~--~~~-~~l~~~l~~~a~ 164 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF-PF--PLY-QEVVTALSRVEE 164 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE-EG--GGH-HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc-CC--Ccc-HHHHHHHHHHHH
Confidence 46799999999999999999999999999999999876 44444333332 22 345 899999987664
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.18 E-value=0.22 Score=45.63 Aligned_cols=67 Identities=7% Similarity=0.006 Sum_probs=51.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeC--------CeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFN--------GFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~n--------g~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
.+.|.|.|.+++|++..|.++|-+.|++|..+...+.. +.++-.+.+.. . .....++|++.|...+.
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~-~--~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARV-D--SGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEE-C--TTSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeC-C--CCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999988765 23333333321 1 25678999999987664
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=92.32 E-value=0.3 Score=49.56 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhcCCCC
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHGM 496 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG~~~~ 496 (497)
.+.|.|.|++|+|+...|...|-++|..|+.++-....|.++-.+.+... +.....++|++.|...+.-.||
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~ 83 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP--ADVADGPALRHDVEAAIRKVGL 83 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC--HHHHTSHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec--CCcCCHHHHHHHHHHHHHHcCe
Confidence 46799999999999999999999999999999999999987776666432 1123558899998877644443
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=89.78 E-value=1 Score=45.25 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=53.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 422 RAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCF--NGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 422 ~~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~--ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
..+.|.+.|++|+|+...|-..|-+.|+.|+.++-... .|.++-.+.+. -++.....++|+++|...+.
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~--~~~~~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR--ADTLPFDLDGFREAFTPIAE 91 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE--GGGSSSCHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe--cCCCCCCHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999998865 56655433332 22234678999999876653
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=89.27 E-value=1.6 Score=43.39 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=54.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhcCCCC
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVIS--CFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHGM 496 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS--~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG~~~~ 496 (497)
.+.|.|.|++++|+...|-..|-+.|+.|+..+-. ...|.++-.+.+.. .+ ....++|++++...+.-.||
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~-~~~~~~L~~~f~~la~~l~m 80 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ--PD-DFDEAGFRAGLAERSEAFGM 80 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CS-SCCHHHHHHHHHHHHGGGTC
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec--CC-CCCHHHHHHHHHHHHHHcCC
Confidence 36799999999999999999999999999999887 44566554433332 22 47789999999877654443
No 28
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=88.70 E-value=1.4 Score=43.78 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhcCCC
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVIS--CFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHG 495 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS--~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG~~~ 495 (497)
.+.|.+.|++|+|+...|-..|-+.|+.|+..+-. ...|.++-.+.+.. .+.....++|++.|...+.-.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~~~~~~~~L~~~f~~la~~~~ 78 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA--AAKVIPLASLRTGFGVIAAKFT 78 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE--SSCCCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc--CCCCCCHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999999999998875 34666555444432 2224678999999987664333
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=88.68 E-value=1.4 Score=44.00 Aligned_cols=71 Identities=7% Similarity=0.094 Sum_probs=51.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 422 RAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVIS--CFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 422 ~~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS--~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
..+.|.+.|++|+|+...|-..|-+.|+.|+.++-. ...|.++-.+.+.....+.....++|++.|...+.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAE 81 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999887 34566554333322100224678999999877654
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=84.18 E-value=4.3 Score=40.35 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=50.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhcCCCC
Q 047004 422 RAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVIS--CFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHGM 496 (497)
Q Consensus 422 ~~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS--~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG~~~~ 496 (497)
..+.|.+.|++|+|+...|-..|-+.|+.|+.++-. ...|.++-.+.+.. ++ ...++|++.|...+.-.||
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~--~~~~~L~~~f~~la~~~~m 78 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI--PV--AGVNDFNSAFGKVVEKYNA 78 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CC-----CHHHHHHHHHHGGGTC
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc--CC--CCHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999999875 34565554333321 22 2344888888776654343
No 31
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=83.81 E-value=1.8 Score=37.57 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 047004 425 NIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGF 462 (497)
Q Consensus 425 ~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~ng~ 462 (497)
.|+|.|.+|.|+|.+|+++|-+.++++..+++... |.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 58999999999999999999999999999999766 54
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=75.50 E-value=6.6 Score=36.04 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 424 VNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFN--GFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 424 V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~n--g~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
..|.|...+++|+|.+|..+|...|++|.+.++.... +...-+|.++ +..-..++|.+.|.+..+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~----~d~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV----GDEKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE----SCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe----ccHHHHHHHHHHHcCCCC
Confidence 4588889999999999999999999999998887554 5555555554 224566788887776544
No 33
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=72.75 E-value=22 Score=30.49 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=40.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhcC
Q 047004 426 IHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGF 493 (497)
Q Consensus 426 I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG~ 493 (497)
|-+.-+.+||.+.+++++|.+.|+.|....++.-++...-+|+.+ ..+...++|++ +||
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~--------d~~~A~~~L~~-~g~ 133 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS--------NMDKCIEVLKE-KKV 133 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES--------CHHHHHHHHHH-TTC
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC--------CHHHHHHHHHH-cCC
Confidence 344456899999999999999999996644442344444334331 56777777776 565
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=68.06 E-value=8.1 Score=35.56 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 424 VNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFN--GFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 424 V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~n--g~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
..|.|...+++|+|.+|...|...|++|.+.++.... +...-+|.+. +.+-..++|.+.|.+..+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~----~d~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN----GPDEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE----ECHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe----ccHHHHHHHHHHhcCCCC
Confidence 3588889999999999999999999999998887554 5555566664 224566778877776543
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=66.63 E-value=14 Score=35.75 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=44.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEeeecCCcccCHHHHHHHHHHhhc
Q 047004 423 AVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFN-----GFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAG 492 (497)
Q Consensus 423 ~V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~n-----g~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG 492 (497)
.+.|.|.+.+|+|+|.+|+.+|-+.+..|.+.+..... +.+.-+ ++.. + . +.++|-+.|.+.-|
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~--d-~-~Le~LL~kLrkI~g 72 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIE--G-G-DFEKILERVKTFDY 72 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEEC--S-S-CHHHHHHHHHTCTT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEEC--C-C-CHHHHHHHHhCCCC
Confidence 36788999999999999999999999999999998863 444333 4432 1 2 77888887776544
No 36
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=53.86 E-value=29 Score=32.78 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=47.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeeecCCcccCHHHHHHHHHHh
Q 047004 424 VNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFN--GFAMDVFRAEQCKEGQDVHPEQIKAVLLDS 490 (497)
Q Consensus 424 V~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~n--g~vl~~f~aeq~keg~~v~~eqIk~~L~~~ 490 (497)
..|.|.-++++|.|.+|...|...|+.|.+..+.... +...-+|++.. .+...++|++.|.+.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g----~e~~ieqL~kQL~KL 94 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----DDKTIEQIEKQAYKL 94 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----CTTHHHHHHHHHTTS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC----CHHHHHHHHHHhcCc
Confidence 3577888899999999999999999999998886443 44555556642 256678888877653
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.14 E-value=20 Score=27.63 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcCCccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 047004 315 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELES 368 (497)
Q Consensus 315 ERrRR~kin~~~~~LrsLVP~~~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~es 368 (497)
||++|.+...+..+-++ =..-.+||..|+.+++.|+.+...
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~ 41 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSA 41 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777888887776 123445566666666655555443
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=47.21 E-value=1.2e+02 Score=25.80 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=40.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeeecCCcccCHHHHHHHHHHhhcC
Q 047004 425 NIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGF 493 (497)
Q Consensus 425 ~I~I~C~kr~GlL~~ILeALEeLgLdVvsAsIS~~ng~vl~~f~aeq~keg~~v~~eqIk~~L~~~aG~ 493 (497)
.|.|.-++++|.+.+|..+|.+.|+.|....+....+.- +++.. . -.++..++.|.+ .||
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~--~~~~~-~-----~d~~~a~~~L~~-~G~ 67 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFG--ILRGI-V-----SDPDKAYKALKD-NHF 67 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCE--EEEEE-E-----SCHHHHHHHHHH-TTC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCC--EEEEE-e-----CCHHHHHHHHHH-cCC
Confidence 466777889999999999999999999877665433321 12221 1 245666776664 354
No 39
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.33 E-value=25 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 047004 350 EYLKELLQRINDLHNELESTP 370 (497)
Q Consensus 350 ~YIk~Lq~~v~~L~~e~esl~ 370 (497)
.||..|+++|+.|+..++.+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999988775
No 40
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.02 E-value=48 Score=23.95 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcC
Q 047004 344 ILGDAIEYLKELLQRINDLHNELEST 369 (497)
Q Consensus 344 IL~eAI~YIk~Lq~~v~~L~~e~esl 369 (497)
.+.+--+||++|+++..+|+.-++.+
T Consensus 4 tvkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 35677899999999999888765543
No 41
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=27.73 E-value=28 Score=27.09 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 047004 349 IEYLKELLQRINDLHNELESTP 370 (497)
Q Consensus 349 I~YIk~Lq~~v~~L~~e~esl~ 370 (497)
-.||..|+++|+.|+..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999998877664
No 42
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=27.66 E-value=30 Score=26.10 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 047004 350 EYLKELLQRINDLHNELEST 369 (497)
Q Consensus 350 ~YIk~Lq~~v~~L~~e~esl 369 (497)
.||..|+.+++.|+..++.+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777776655
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.40 E-value=41 Score=27.77 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 047004 345 LGDAIEYLKELLQRINDLHNELEST 369 (497)
Q Consensus 345 L~eAI~YIk~Lq~~v~~L~~e~esl 369 (497)
+..||+-|.-||.+|++|+.+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998886543
No 44
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.17 E-value=69 Score=22.91 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=25.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 047004 339 MDRASILGDAIEYLKELLQRINDLHNELES 368 (497)
Q Consensus 339 ~dKasIL~eAI~YIk~Lq~~v~~L~~e~es 368 (497)
+.-+..|+++-+-|..|+.+++.|++|+-.
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999999998743
No 45
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=25.34 E-value=69 Score=21.16 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHHHHH
Q 047004 339 MDRASILGDAIEYLKELLQR 358 (497)
Q Consensus 339 ~dKasIL~eAI~YIk~Lq~~ 358 (497)
+...-+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45677899999999876653
No 46
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.99 E-value=92 Score=26.27 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=41.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCC--------------------C-CcCCccchHHHHHHHHHHHHHHHHHHHHhhh
Q 047004 309 AKNLMAERRRRKKLNDRLYMLRSVVPK--------------------I-SKMDRASILGDAIEYLKELLQRINDLHNELE 367 (497)
Q Consensus 309 ~~H~~~ERrRR~kin~~~~~LrsLVP~--------------------~-~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~e 367 (497)
-+|...|| ||.+|..++..|+.=|-. . ....-..-|.++..-|..|+..+..++.-+.
T Consensus 8 ~s~LPpeq-RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 8 FSHLPPEQ-QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSSCHHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777887 677888888888766531 1 1122233588888888888888888777665
Q ss_pred cC
Q 047004 368 ST 369 (497)
Q Consensus 368 sl 369 (497)
++
T Consensus 87 e~ 88 (98)
T 2ke4_A 87 EA 88 (98)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 47
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=23.35 E-value=2.8e+02 Score=22.79 Aligned_cols=37 Identities=3% Similarity=0.075 Sum_probs=30.4
Q ss_pred eEEEEEEcCC--CCcHHHHHHHHHHhCCCeEEEEEEEee
Q 047004 423 AVNIHMFCSR--RPGLLLSTMRALDNLGLDIQQAVISCF 459 (497)
Q Consensus 423 ~V~I~I~C~k--r~GlL~~ILeALEeLgLdVvsAsIS~~ 459 (497)
.+.|+|.|.+ ..-+..-++++|+..++.+....+..+
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~ 46 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPA 46 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecC
Confidence 3679999986 466788889999999999999996653
No 48
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.00 E-value=1.8e+02 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC
Q 047004 350 EYLKELLQRINDLHNELESTPP 371 (497)
Q Consensus 350 ~YIk~Lq~~v~~L~~e~esl~~ 371 (497)
.||+.|+++++.|+..+..+..
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 4899999999999999987753
Done!