BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047005
         (190 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C3LPC8|HEM6_VIBCM Coproporphyrinogen-III oxidase, aerobic OS=Vibrio cholerae serotype
           O1 (strain M66-2) GN=hemF PE=3 SV=1
          Length = 305

 Score = 35.8 bits (81), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 109 IGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRV 168
           IGG   DD           +N +P  + F  + + G+ + QA V  VE     P  E   
Sbjct: 189 IGGLFFDD-----------LNEWPFEQCFAYMQAVGEGYTQAYVPIVEKRKNTPFTERER 237

Query: 169 KQKVSSRGKYVSVNI 183
           + ++  RG+YV  N+
Sbjct: 238 QFQLYRRGRYVEFNL 252


>sp|A6T343|Y3250_JANMA UPF0250 protein mma_3250 OS=Janthinobacterium sp. (strain
           Marseille) GN=mma_3250 PE=3 SV=1
          Length = 91

 Score = 32.3 bits (72), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 131 YPTVRGFTAIGSGGDDFVQAMVVAVESVIQKP-IPEGRVKQKVSSRGKYVSVNI 183
           YP+      +G   D FV  ++  V  V+  P   EGR++Q+ SS G Y+S+ +
Sbjct: 13  YPSDFPIKVMGLAHDQFVPTIIDVV--VVHDPEFHEGRIEQRPSSAGNYLSLTV 64


>sp|Q8BJ25|THAP3_MOUSE THAP domain-containing protein 3 OS=Mus musculus GN=Thap3 PE=2 SV=1
          Length = 218

 Score = 31.6 bits (70), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 127 KVNSYPTVRGFT-------AIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSR 175
           K N+ PTV  F         +G+GGD   + M   +E  +Q P PEG V+Q +  R
Sbjct: 74  KHNAVPTVFAFQNPTEVCPEVGAGGDSSGRNMDTTLEE-LQPPTPEGPVQQVLPDR 128


>sp|Q9LCK1|GYRB_CYTHU DNA gyrase subunit B (Fragment) OS=Cytophaga hutchinsonii GN=gyrB
           PE=3 SV=1
          Length = 478

 Score = 30.4 bits (67), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 72  SPSADDSDQGP-PQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNS 130
           +P   +SD+GP P E  +   +  S+         N + GGT          AL R + S
Sbjct: 140 TPLYMESDKGPIPVEVAMLYNTSYSENVFSYVNNINTIEGGTHVAGFRR---ALTRTLKS 196

Query: 131 YPTVRGFT---AIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSS 174
           Y    G      +   GDDF + +   +   +Q+P  EG+ K K+ +
Sbjct: 197 YADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFEGQTKTKLGN 243


>sp|Q9LCK0|GYRB_CYTAU DNA gyrase subunit B (Fragment) OS=Cytophaga aurantiaca GN=gyrB
           PE=3 SV=1
          Length = 478

 Score = 30.0 bits (66), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 73  PSADDSDQGP-PQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSY 131
           P   +SD+GP P E  +   +  S+         N V GGT          AL R + SY
Sbjct: 141 PLYMESDKGPIPVEVAMLYNTSYSENVFSYVNNINTVEGGTHVAGFRR---ALTRTLKSY 197

Query: 132 PTVRGFT---AIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSS 174
               G      +   GDDF + +   +   +Q+P  EG+ K K+ +
Sbjct: 198 ADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFEGQTKTKLGN 243


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,952,514
Number of Sequences: 539616
Number of extensions: 2628944
Number of successful extensions: 6767
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6766
Number of HSP's gapped (non-prelim): 7
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)