Query 047005
Match_columns 190
No_of_seqs 121 out of 238
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 06:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00907 hypothetical protein; 99.9 8.7E-25 1.9E-29 165.2 7.8 64 125-190 8-71 (92)
2 PRK02047 hypothetical protein; 99.9 3.8E-22 8.2E-27 149.3 7.6 64 125-190 7-70 (91)
3 COG2921 Uncharacterized conser 99.9 3.4E-22 7.3E-27 152.0 6.6 62 126-189 7-68 (90)
4 PRK00341 hypothetical protein; 99.8 2.1E-21 4.6E-26 145.6 7.6 63 125-190 7-70 (91)
5 PRK04998 hypothetical protein; 99.8 3.9E-21 8.5E-26 142.2 7.2 62 125-190 6-67 (88)
6 PF04359 DUF493: Protein of un 99.8 4.2E-21 9E-26 139.6 2.9 63 126-190 2-64 (85)
7 PF14633 SH2_2: SH2 domain; PD 72.8 3.2 7E-05 36.1 2.8 39 144-183 38-77 (220)
8 COG1818 Predicted RNA-binding 52.7 15 0.00033 31.1 3.1 65 116-183 43-113 (175)
9 PF01702 TGT: Queuine tRNA-rib 51.9 29 0.00063 29.2 4.7 88 83-180 66-154 (238)
10 PRK13991 cell division topolog 43.5 57 0.0012 24.9 4.7 38 145-183 40-77 (87)
11 PF03776 MinE: Septum formatio 40.9 77 0.0017 22.7 4.8 37 145-183 28-64 (70)
12 KOG0226 RNA-binding proteins [ 40.1 18 0.00038 33.3 1.7 82 82-177 148-230 (290)
13 TIGR01215 minE cell division t 34.8 69 0.0015 23.8 3.9 37 145-183 39-75 (81)
14 cd00062 FN2 Fibronectin Type I 33.0 20 0.00043 24.5 0.7 14 131-144 5-18 (48)
15 smart00059 FN2 Fibronectin typ 31.8 19 0.00041 24.8 0.4 14 131-144 6-19 (49)
16 PRK00112 tgt queuine tRNA-ribo 29.6 1.2E+02 0.0026 28.1 5.3 88 83-180 193-281 (366)
17 PF08170 POPLD: POPLD (NUC188) 28.7 21 0.00046 26.6 0.3 30 118-147 30-59 (92)
18 PRK00296 minE cell division to 27.6 99 0.0022 23.3 3.7 37 145-183 40-76 (86)
19 PRK01008 queuine tRNA-ribosylt 26.9 1.6E+02 0.0035 27.6 5.7 88 83-180 209-296 (372)
20 PF09642 YonK: YonK protein; 25.9 55 0.0012 24.0 2.0 12 173-184 40-51 (62)
21 PRK13988 cell division topolog 25.4 1.5E+02 0.0033 23.0 4.5 39 145-186 42-82 (97)
22 PLN02150 terpene synthase/cycl 24.7 40 0.00088 25.5 1.2 20 118-138 33-52 (96)
23 COG3403 Uncharacterized conser 23.3 1.1E+02 0.0025 27.8 3.9 58 112-183 17-93 (257)
24 PRK05799 coproporphyrinogen II 23.0 3E+02 0.0066 24.4 6.5 71 84-158 36-108 (374)
25 PF06268 Fascin: Fascin domain 22.1 83 0.0018 23.4 2.4 15 167-182 37-51 (111)
26 PF13291 ACT_4: ACT domain; PD 22.1 2E+02 0.0043 19.7 4.2 49 136-188 8-56 (80)
27 PF13740 ACT_6: ACT domain; PD 22.0 80 0.0017 22.0 2.2 44 135-183 3-46 (76)
28 PTZ00450 macrophage migration 21.6 3.9E+02 0.0085 20.7 6.5 58 95-171 33-99 (113)
29 PF06635 NolV: Nodulation prot 21.6 22 0.00049 31.2 -0.8 43 145-188 93-142 (207)
30 cd04876 ACT_RelA-SpoT ACT dom 21.1 2E+02 0.0042 17.0 5.8 43 137-183 1-43 (71)
31 cd04868 ACT_AK-like ACT domain 20.7 2E+02 0.0044 17.1 5.1 23 137-159 3-28 (60)
32 PRK13989 cell division topolog 20.3 1.8E+02 0.0038 21.9 3.8 37 145-183 41-77 (84)
33 PF10733 DUF2525: Protein of u 20.2 64 0.0014 23.5 1.4 40 84-127 2-43 (58)
No 1
>PRK00907 hypothetical protein; Provisional
Probab=99.91 E-value=8.7e-25 Score=165.21 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=60.5
Q ss_pred hcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005 125 DRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190 (190)
Q Consensus 125 dEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s 190 (190)
++.+|||||+|||||||.++++|.++|++||++|+|+ ++++.+++|+||+|||+|||+ .|+|.|
T Consensus 8 ~~~liEFPc~fpiKVmG~a~~~l~~~V~~vv~~h~p~-~~~~~i~~r~Ss~GkY~Svtv-~i~ats 71 (92)
T PRK00907 8 PDHGFQFPGTFELSAMGTAERGLETELPRLLAATGVE-LLQERISWKHSSSGKYVSVRI-GFRAES 71 (92)
T ss_pred CCccEecCCCCeEEEEEcCchhHHHHHHHHHHHhCCC-CCcCcEEeccCCCCEEEEEEE-EEEECC
Confidence 4679999999999999999999999999999999999 889999999999999999999 588765
No 2
>PRK02047 hypothetical protein; Provisional
Probab=99.87 E-value=3.8e-22 Score=149.27 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=60.6
Q ss_pred hcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005 125 DRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190 (190)
Q Consensus 125 dEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s 190 (190)
++.+|||||+|||||||.++++|.++|.+++++|+++ ++.+.++.|+||+|||+|||| .|+|.|
T Consensus 7 ~~~liefPc~~~~KvIG~~~~~~~~~v~~iv~~~~~~-~~~~~i~~k~Ss~GkY~Svtv-~v~v~s 70 (91)
T PRK02047 7 KESLIEYPSDFPIKVMGKAHPEFADTIFKVVSVHDPE-FDLEKIEERPSSGGNYTGLTI-TVRATS 70 (91)
T ss_pred CcccccCCCCCeEEEEEeCcHhHHHHHHHHHHHhCCC-CccCceEEccCCCCeEEEEEE-EEEECC
Confidence 4689999999999999999999999999999999998 888999999999999999999 888865
No 3
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=3.4e-22 Score=152.00 Aligned_cols=62 Identities=24% Similarity=0.428 Sum_probs=57.1
Q ss_pred cccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEec
Q 047005 126 RKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVS 189 (190)
Q Consensus 126 EsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~ 189 (190)
.+||||||.|||||||.++++|.++|+++||+|+|+ ....+|++|+||||||+||+| .|++.
T Consensus 7 ~~l~eFPc~F~~KVmG~a~~~l~~~vv~vvqr~ap~-~~~~~~~~k~SSkGnY~svsI-~i~A~ 68 (90)
T COG2921 7 KELLEFPCTFTYKVMGAAGPELEDQVVEVVQRHAPG-DYTPRVSWKPSSKGNYLSVSI-TIRAT 68 (90)
T ss_pred chheECCccceeeehcccchhHHHHHHHHHHHHCCc-ccCceeeeccCCCCceEEEEE-EEEEC
Confidence 389999999999999999999999999999999998 667899999999999999999 56543
No 4
>PRK00341 hypothetical protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=145.61 Aligned_cols=63 Identities=17% Similarity=0.329 Sum_probs=58.3
Q ss_pred hcccccCCC-ccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005 125 DRKVNSYPT-VRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190 (190)
Q Consensus 125 dEsLiEFPC-dFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s 190 (190)
++.+||||| +|||||||.++++|.++|.+||++|+ + ++.+.+++|+||+|||+|+|| .|.|.|
T Consensus 7 ~~~~ieFPc~~~~~KViG~~~~~~~~~V~~iv~~~~-~-~~~~~~~~k~Ss~GkY~S~tv-~i~~~s 70 (91)
T PRK00341 7 KSPKIEFPCEDYPIKVIGDTGVGFKDLVIEILQKHA-D-VDLSTLAERQSSNGKYTTVQL-HIVATD 70 (91)
T ss_pred CCcccCCCCCCccEEEEEcCchhHHHHHHHHHHHhC-C-CcccceeeccCCCCEEEEEEE-EEEECC
Confidence 568999999 79999999999999999999999998 5 678899999999999999999 777765
No 5
>PRK04998 hypothetical protein; Provisional
Probab=99.84 E-value=3.9e-21 Score=142.24 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=56.6
Q ss_pred hcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005 125 DRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190 (190)
Q Consensus 125 dEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s 190 (190)
++.+|||||+|||||||.++++|.++|.+++++|+|+ . +.++.|+||+|||+|||| .|+|.|
T Consensus 6 ~~~~iefPc~~~~Kvig~~~~~~~~~v~~v~~~~~~~-~--~~~~~r~S~~GkY~Svtv-~v~v~s 67 (88)
T PRK04998 6 LKELLEFPCSFTYKVMGLARPELVDQVVEVVQRHAPG-D--YTPTVKPSSKGNYHSVSI-TITATS 67 (88)
T ss_pred ccccccCCCCceEEEEEeCcHhHHHHHHHHHHHhCCC-C--CCceEccCCCCEEEEEEE-EEEECC
Confidence 5789999999999999999999999999999999988 3 358999999999999999 588865
No 6
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=99.82 E-value=4.2e-21 Score=139.64 Aligned_cols=63 Identities=37% Similarity=0.550 Sum_probs=55.6
Q ss_pred cccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005 126 RKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190 (190)
Q Consensus 126 EsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s 190 (190)
|.++||||+|+|||||.++++|.++|.+++++|+|+ +++..++.|+||+|||+|||+ .++|.|
T Consensus 2 e~~~efP~~y~~KvIg~~~~~~~~~v~~iv~~~~~~-~~~~~~~~k~S~~GkY~Svtv-~v~v~s 64 (85)
T PF04359_consen 2 EPLIEFPCDYPFKVIGKAEEDFVEAVKEIVEKHAPE-FDDEKVSSKPSSKGKYVSVTV-SVTVES 64 (85)
T ss_dssp S-SS-SSCEEEEEEEEC-STTHHHHHCCCCCCHSS---SSEEEEECCSTTSSEEEEEE-EEEESS
T ss_pred CccccCCCcceEEEEEECcHhHHHHHHHHHHHhCCc-CccCceEEecCCCCeEEEEEE-EEEECC
Confidence 678999999999999999999999999999999988 788999999999999999999 888875
No 7
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=72.84 E-value=3.2 Score=36.09 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCC-cEEEEEE
Q 047005 144 GDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRG-KYVSVNI 183 (190)
Q Consensus 144 ~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkG-KYvSVTV 183 (190)
||-|..-=..-.++++.+ -+.+.+-+||||+| .+++||+
T Consensus 38 HP~F~n~~~~qAe~~L~~-~~~Ge~iIRPSSkG~dhL~vTw 77 (220)
T PF14633_consen 38 HPLFKNFNYKQAEEYLAD-QDVGEVIIRPSSKGPDHLTVTW 77 (220)
T ss_dssp STTEESS-HHHHHHHHCC-S-TT-EEEEE-TTTTTEEEEEE
T ss_pred CCCccCCCHHHHHHHHhc-CCCCCEEEeeCCCCCCeEEEEE
Confidence 344443334445566655 45677889999999 6999997
No 8
>COG1818 Predicted RNA-binding protein, contains THUMP domain [General function prediction only]
Probab=52.74 E-value=15 Score=31.09 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=46.7
Q ss_pred CchhHHHHhhcccccCCC---ccceeEeeCCC-CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCC--cEEEEEE
Q 047005 116 DSTNEWLALDRKVNSYPT---VRGFTAIGSGG-DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRG--KYVSVNI 183 (190)
Q Consensus 116 d~~~eW~~LdEsLiEFPC---dFPIKVMG~a~-ddFv~~VveIVerHapd~fd~~~Vt~RpSSkG--KYvSVTV 183 (190)
.+.++|..+-+.+.++|+ .+|+.+.+... ++..+++.++++.+..+ ..++.+|.-+.| .|.|..+
T Consensus 43 ~~~~d~~~~~~~~~~~~~~~rv~pv~~~~~~dldeI~~~~~~l~~~~i~~---~~tFaVr~~rRG~~~f~s~~~ 113 (175)
T COG1818 43 ESELDEEEALEKLKEVPEVERVIPVEIEVETDLDEIEEAAAELAEEKIKE---GKTFAVRTKRRGKHDFTSRDV 113 (175)
T ss_pred EccCcHHHHHHHhcCCCceeeEEEEEeeccCCHHHHHHHHHHHHhcccCC---CCeEEEEEeecCCCCccccce
Confidence 444458888889999999 56777777755 56677777777766544 567899999999 4544443
No 9
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=51.88 E-value=29 Score=29.23 Aligned_cols=88 Identities=16% Similarity=0.238 Sum_probs=51.1
Q ss_pred cHHHHHHHhhhhhcccCccccccceEEeccccCCchhHHHHhhccc-ccCCCccceeEeeCCCCcHHHHHHHHHHHhcCC
Q 047005 83 PQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKV-NSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQK 161 (190)
Q Consensus 83 ~~~a~l~ais~~s~~~grV~~ttn~v~ggt~~~d~~~eW~~LdEsL-iEFPCdFPIKVMG~a~ddFv~~VveIVerHapd 161 (190)
..+.-.+++.++++ ..-....+||....+..+++.++-+.+ -.-|-+-|.-+||.+++.. |+..|+.-++
T Consensus 66 ~~~lR~~s~~~l~~-----~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l~G~~~P~~---i~~~v~~GvD- 136 (238)
T PF01702_consen 66 DKDLRRRSAEELSE-----DGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYLLGVGTPEE---ILEAVYLGVD- 136 (238)
T ss_dssp -HHHHHHHHHHHHH-----SS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEETTB-SHHH---HHHHHHTT---
T ss_pred CHHHHHHHHHHHHh-----cccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceeccCCCCHHH---HHHHHHcCCc-
Confidence 45566777777777 245678899988877667777766654 4599999999999997754 4444443332
Q ss_pred CCCCCCeEEeeCCCCcEEE
Q 047005 162 PIPEGRVKQKVSSRGKYVS 180 (190)
Q Consensus 162 ~fd~~~Vt~RpSSkGKYvS 180 (190)
.||-. .-.+....|+|+.
T Consensus 137 ~fDs~-~p~~~A~~G~al~ 154 (238)
T PF01702_consen 137 LFDSS-YPTRLARHGIALT 154 (238)
T ss_dssp EEEES-HHHHHHHTTEEEE
T ss_pred EEcch-HHHHHHhcceeec
Confidence 24321 2244455666554
No 10
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=43.49 E-value=57 Score=24.90 Aligned_cols=38 Identities=5% Similarity=0.112 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
+.+.++|+++|.+|++. ++++.|+++-.+++....+-+
T Consensus 40 ~~lk~eil~VIsKYv~~-Id~~~i~V~l~~~~~~~~Le~ 77 (87)
T PRK13991 40 EQMKADLAEVIKRYVPA-IDAEAIEVTLSRGEAHDHLKA 77 (87)
T ss_pred HHHHHHHHHHHHHHhcc-cCccceEEEEEeCCCceEEEE
Confidence 35667889999999885 678889999888888755443
No 11
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=40.86 E-value=77 Score=22.75 Aligned_cols=37 Identities=8% Similarity=0.247 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
+.+.++|+++|.+|+. ++++.|++.-.+.|.+..+.+
T Consensus 28 ~~lk~eil~viskYv~--i~~~~v~v~l~~~~~~~~L~~ 64 (70)
T PF03776_consen 28 EQLKKEILEVISKYVE--IDEEDVEVQLERDDDMSVLEA 64 (70)
T ss_dssp HHHHHHHHHHHHHHS-----CCCEEEEEEECTTEEEEEE
T ss_pred HHHHHHHHHHHHhhee--cCcccEEEEEEECCCceEEEE
Confidence 4567789999999985 356788888888899866655
No 12
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=40.09 E-value=18 Score=33.31 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=56.3
Q ss_pred CcHHHHHHHhhhhhcccCccccccceEEeccccCCchh-HHHHhhcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcC
Q 047005 82 PPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTN-EWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQ 160 (190)
Q Consensus 82 ~~~~a~l~ais~~s~~~grV~~ttn~v~ggt~~~d~~~-eW~~LdEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHap 160 (190)
...+|++++..+- .+-.++..--=+.|||+-+|-+. ||.+.|-.++ -|.=+.|--++|+.-+.+.+|
T Consensus 148 k~s~a~~k~~~~~--~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIf----------cgdlgNevnd~vl~raf~Kfp 215 (290)
T KOG0226|consen 148 KASDALLKAETEK--EKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIF----------CGDLGNEVNDDVLARAFKKFP 215 (290)
T ss_pred chhhhhhhhcccc--ccccccCcceeeccccccCCcccccCccccceee----------cccccccccHHHHHHHHHhcc
Confidence 3445666655432 23334444345678999888766 8888775543 266677788889999999999
Q ss_pred CCCCCCCeEEeeCCCCc
Q 047005 161 KPIPEGRVKQKVSSRGK 177 (190)
Q Consensus 161 d~fd~~~Vt~RpSSkGK 177 (190)
. |....| +|.|+.||
T Consensus 216 s-f~~akv-iRdkRTgK 230 (290)
T KOG0226|consen 216 S-FQKAKV-IRDKRTGK 230 (290)
T ss_pred c-hhhccc-cccccccc
Confidence 9 766665 89999887
No 13
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=34.81 E-value=69 Score=23.83 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
+.+.++|+++|.+|+. ++++.|++.-.++|.|..+-+
T Consensus 39 ~~mk~dil~VIskY~~--id~~~v~v~l~~~~~~~~L~~ 75 (81)
T TIGR01215 39 EELRKEILEVISKYVE--IDPEMVEVSLESQGDMSVLEA 75 (81)
T ss_pred HHHHHHHHHHHHHhee--cchHhEEEEEEeCCCeeEEEE
Confidence 6788899999999975 457789988888898866554
No 14
>cd00062 FN2 Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. Fibronectin is composed of 3 types of modules, FN1,FN2 and FN3. The collagen binding domain contains four FN1 and two FN2 repeats.
Probab=33.03 E-value=20 Score=24.49 Aligned_cols=14 Identities=29% Similarity=0.097 Sum_probs=11.2
Q ss_pred CCCccceeEeeCCC
Q 047005 131 YPTVRGFTAIGSGG 144 (190)
Q Consensus 131 FPCdFPIKVMG~a~ 144 (190)
=||.|||+-.|..-
T Consensus 5 ~~C~FPF~y~g~~y 18 (48)
T cd00062 5 APCVFPFIYRGKWY 18 (48)
T ss_pred CccCCCEEECCEEE
Confidence 38999999988643
No 15
>smart00059 FN2 Fibronectin type 2 domain. One of three types of internal repeat within the plasma protein, fibronectin. Also occurs in coagulation factor XII, 2 type IV collagenases, PDC-109, and cation-independent mannose-6-phosphate and secretory phospholipase A2 receptors. In fibronectin, PDC-109, and the collagenases, this domain contributes to collagen-binding function.
Probab=31.77 E-value=19 Score=24.78 Aligned_cols=14 Identities=29% Similarity=0.145 Sum_probs=11.3
Q ss_pred CCCccceeEeeCCC
Q 047005 131 YPTVRGFTAIGSGG 144 (190)
Q Consensus 131 FPCdFPIKVMG~a~ 144 (190)
=||.|||+-.|..-
T Consensus 6 ~~C~FPF~y~g~~Y 19 (49)
T smart00059 6 EPCVFPFIYNGKKY 19 (49)
T ss_pred CceECCEEECCEEE
Confidence 48999999988643
No 16
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=29.59 E-value=1.2e+02 Score=28.05 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=58.2
Q ss_pred cHHHHHHHhhhhhcccCccccccceEEecc-ccCCchhHHHHhhcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCC
Q 047005 83 PQEAVLKAISEVSKTEGRVGQTTNVVIGGT-VADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQK 161 (190)
Q Consensus 83 ~~~a~l~ais~~s~~~grV~~ttn~v~ggt-~~~d~~~eW~~LdEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd 161 (190)
-.|--.+++.++.+. .-....|||- ++++..+-|..++...-.-|-+-|.=+||.+.+ +.|+..|..=++-
T Consensus 193 ~~dLR~~sa~~l~~~-----~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPryl~Gvg~P---~~i~~~v~~GvD~ 264 (366)
T PRK00112 193 YEDLRRESAKGLVEI-----DFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPRYLMGVGTP---EDLVEGVARGVDM 264 (366)
T ss_pred cHHHHHHHHHHHHhC-----CCceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCeEecCCCCH---HHHHHHHHcCCCE
Confidence 344445556666653 2456888996 555545566677777788999999999998865 4566666655543
Q ss_pred CCCCCCeEEeeCCCCcEEE
Q 047005 162 PIPEGRVKQKVSSRGKYVS 180 (190)
Q Consensus 162 ~fd~~~Vt~RpSSkGKYvS 180 (190)
||-. .-.|..+.|.|+.
T Consensus 265 -FD~~-~p~r~Ar~G~alt 281 (366)
T PRK00112 265 -FDCV-MPTRNARNGTLFT 281 (366)
T ss_pred -EeeC-CccccccCCceeC
Confidence 6432 3467788888864
No 17
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [].; GO: 0004526 ribonuclease P activity, 0006396 RNA processing
Probab=28.71 E-value=21 Score=26.64 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=23.7
Q ss_pred hhHHHHhhcccccCCCccceeEeeCCCCcH
Q 047005 118 TNEWLALDRKVNSYPTVRGFTAIGSGGDDF 147 (190)
Q Consensus 118 ~~eW~~LdEsLiEFPCdFPIKVMG~a~ddF 147 (190)
+.++.++.....-||.|||....|......
T Consensus 30 e~~~~~~E~g~~~FP~DyPdt~ag~~~~~~ 59 (92)
T PF08170_consen 30 ERRQLAFESGIPSFPDDYPDTPAGQDENLE 59 (92)
T ss_pred HHHHHHHHcCCCcCCCCCCCCHHHHHHHHH
Confidence 447777788899999999999888755444
No 18
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=27.64 E-value=99 Score=23.32 Aligned_cols=37 Identities=11% Similarity=0.323 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
+.+.++|+++|.+|+. ++++.|++.-.++|.+-.+-+
T Consensus 40 ~~lk~dIl~VIsKY~~--Id~~~v~i~l~~~~~~~~Le~ 76 (86)
T PRK00296 40 PQLRKEILEVIAKYVQ--IDPDKVSVQLDKDGDISTLEL 76 (86)
T ss_pred HHHHHHHHHHHHHhee--cChhhEEEEEEeCCCeEEEEE
Confidence 5778899999999986 457788888888886544443
No 19
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=26.91 E-value=1.6e+02 Score=27.58 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=57.9
Q ss_pred cHHHHHHHhhhhhcccCccccccceEEeccccCCchhHHHHhhcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCC
Q 047005 83 PQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKP 162 (190)
Q Consensus 83 ~~~a~l~ais~~s~~~grV~~ttn~v~ggt~~~d~~~eW~~LdEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~ 162 (190)
-.|--.++..++.+. .--..-|||-++++..+-|..|+...-.-|-+-|.-+||.+.++ .|++.|+.=++-
T Consensus 209 ~~dLR~~Sa~~l~~~-----~~~GyaIGG~vge~~~~~~~il~~~~~~LP~~kPRyLmGvG~P~---di~~~V~~GvD~- 279 (372)
T PRK01008 209 DPDQRKIGCKFVEDL-----PFDGSAIGGSLGKNLQEMVEVVGVTTSNLSKERPVHLLGIGDLP---SIWATVGFGIDS- 279 (372)
T ss_pred CHHHHHHHHHHHHhC-----CCCEEEECCCCCCCHHHHHHHHHHHHhhCCCCCCeEEecCCCHH---HHHHHHHhCCCe-
Confidence 444455555666554 24457788878877777788888888788999999999999853 344555555443
Q ss_pred CCCCCeEEeeCCCCcEEE
Q 047005 163 IPEGRVKQKVSSRGKYVS 180 (190)
Q Consensus 163 fd~~~Vt~RpSSkGKYvS 180 (190)
|| ...=.|.-+.|.|+.
T Consensus 280 FD-cv~Ptr~AR~G~~lt 296 (372)
T PRK01008 280 FD-SSYPTKAARHGLILT 296 (372)
T ss_pred ee-eccchhhhcCCEEEc
Confidence 54 223355566666654
No 20
>PF09642 YonK: YonK protein; InterPro: IPR018600 YonK protein is expressed by the bacterial prophage SPbetaC []. It is a 63 residue protein that associates into a homo-octamer in the form of a beta-stranded barrel with four outer helical features at points of the compass. Its function is unknown. ; PDB: 2H4O_C.
Probab=25.93 E-value=55 Score=24.04 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=10.0
Q ss_pred CCCCcEEEEEEE
Q 047005 173 SSRGKYVSVNIG 184 (190)
Q Consensus 173 SSkGKYvSVTVg 184 (190)
+=+|||+|+||.
T Consensus 40 ~F~gk~VsitIk 51 (62)
T PF09642_consen 40 EFNGKNVSITIK 51 (62)
T ss_dssp TTTTSEEEEEEE
T ss_pred HhCCceEEEEEe
Confidence 447999999995
No 21
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=25.41 E-value=1.5e+02 Score=23.02 Aligned_cols=39 Identities=8% Similarity=0.272 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcE--EEEEEEEE
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKY--VSVNIGPV 186 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKY--vSVTVgpv 186 (190)
+.+.+.|+++|.+|++= +++.|++.-++.+.. +.++| ||
T Consensus 42 ~~mk~dIl~VIskYv~I--d~~~v~V~l~~~~~~~~L~~nI-Pi 82 (97)
T PRK13988 42 EQMRKEILEVVARYVEI--DPEEGEVSLETEDRMTALVANL-PI 82 (97)
T ss_pred HHHHHHHHHHHHHHeee--CccceEEEEEeCCCceEEEEEe-ee
Confidence 45677889999999753 566777777776654 44455 54
No 22
>PLN02150 terpene synthase/cyclase family protein
Probab=24.70 E-value=40 Score=25.48 Aligned_cols=20 Identities=0% Similarity=-0.147 Sum_probs=16.2
Q ss_pred hhHHHHhhcccccCCCcccee
Q 047005 118 TNEWLALDRKVNSYPTVRGFT 138 (190)
Q Consensus 118 ~~eW~~LdEsLiEFPCdFPIK 138 (190)
.+.|+.+++..++ |+.+|.-
T Consensus 33 ~~~WK~iN~e~l~-~~~~p~~ 52 (96)
T PLN02150 33 RDNYKIVMEEFLT-IKDVPRP 52 (96)
T ss_pred HHHHHHHHHHHcC-CCCCCHH
Confidence 3589999999998 7777753
No 23
>COG3403 Uncharacterized conserved protein [Function unknown]
Probab=23.35 E-value=1.1e+02 Score=27.76 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=35.0
Q ss_pred cccCCchhHHHHhhccc----ccCCCccc----------eeEeeCCC-----CcHHHHHHHHHHHhcCCCCCCCCeEEee
Q 047005 112 TVADDSTNEWLALDRKV----NSYPTVRG----------FTAIGSGG-----DDFVQAMVVAVESVIQKPIPEGRVKQKV 172 (190)
Q Consensus 112 t~~~d~~~eW~~LdEsL----iEFPCdFP----------IKVMG~a~-----ddFv~~VveIVerHapd~fd~~~Vt~Rp 172 (190)
++.+-.-+-|..+.|++ ..|||.+. |.|.|.-. .+|...+.+-++.|-
T Consensus 17 ~~p~w~r~~~e~f~Eki~~d~D~FpCi~grqs~~t~q~~iavvgdl~~p~aa~gla~~Laey~t~~~------------- 83 (257)
T COG3403 17 PLPAWQRELFEAFREKIGDDRDPFPCIPGRQSFLTDQLRIAVVGDLRSPSAAXGLAPLLAEYGTISR------------- 83 (257)
T ss_pred cchHHHHHHHHHHHHHhCCCCCCCCcccchHHhccCCeeEEeccCCCCchhhhhhHHHHHHHhhhcc-------------
Confidence 33433345788888876 35999764 66777633 344444444444431
Q ss_pred CCCCcEEEEEE
Q 047005 173 SSRGKYVSVNI 183 (190)
Q Consensus 173 SSkGKYvSVTV 183 (190)
-.|||.|+.+
T Consensus 84 -D~g~~aSfv~ 93 (257)
T COG3403 84 -DTGKYASFVV 93 (257)
T ss_pred -ccCcceEEEE
Confidence 1479999877
No 24
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=22.98 E-value=3e+02 Score=24.45 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHhhhhhcccCccccccceEEeccccCCchhHHHHhhcccccCCCcc--ceeEeeCCCCcHHHHHHHHHHHh
Q 047005 84 QEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVR--GFTAIGSGGDDFVQAMVVAVESV 158 (190)
Q Consensus 84 ~~a~l~ais~~s~~~grV~~ttn~v~ggt~~~d~~~eW~~LdEsLiEFPCdF--PIKVMG~a~ddFv~~VveIVerH 158 (190)
.+++++-|... .+.-.-.+-.+.|||-+.-..+.+.+|.+.+..|+... .|.+- .+.+.+-++.++.+.+.
T Consensus 36 ~~~l~~Ei~~~---~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~eitie-~~p~~~t~e~l~~l~~~ 108 (374)
T PRK05799 36 IKALSKEIRNS---TKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLNKKEDLEFTVE-GNPGTFTEEKLKILKSM 108 (374)
T ss_pred HHHHHHHHHhh---cCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHc
Confidence 45555555432 12222345556677887666778888887776676533 33333 23345556666666554
No 25
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=22.15 E-value=83 Score=23.36 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=11.3
Q ss_pred CeEEeeCCCCcEEEEE
Q 047005 167 RVKQKVSSRGKYVSVN 182 (190)
Q Consensus 167 ~Vt~RpSSkGKYvSVT 182 (190)
.|.+| |.+|||+++.
T Consensus 37 ~v~lr-s~~GkYls~~ 51 (111)
T PF06268_consen 37 KVALR-SHNGKYLSVD 51 (111)
T ss_dssp EEEEE-CTTSEEEEEE
T ss_pred EEEEE-cCCCCEEEEc
Confidence 34577 7899999964
No 26
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=22.07 E-value=2e+02 Score=19.65 Aligned_cols=49 Identities=4% Similarity=0.089 Sum_probs=34.0
Q ss_pred ceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEe
Q 047005 136 GFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQV 188 (190)
Q Consensus 136 PIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V 188 (190)
.|+|.+...++....|..++..+--. =..++++...++++..+++ .+.|
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~n---I~~i~~~~~~~~~~~~~~l-~v~V 56 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVN---IRSINARTNKDDGTARITL-TVEV 56 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSE---EEEEEEEE--ETTEEEEEE-EEEE
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCC---eEEEEeEEeccCCEEEEEE-EEEE
Confidence 47888899999999999999888333 3467777776677887777 4444
No 27
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=22.01 E-value=80 Score=21.98 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=29.7
Q ss_pred cceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 135 RGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 135 FPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
+=|+|+|...+..+..|..++.+|-.+ + +.++-..-|...+..+
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~n-i----~d~~~~~~~~~f~~~~ 46 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCN-I----EDSRQAVLGGRFTLIM 46 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-E-E----EEEEEEEETTEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCc-E----EEEEEEEEcCeEEEEE
Confidence 558999999999999999999999655 3 2344445555555444
No 28
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=21.59 E-value=3.9e+02 Score=20.72 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=39.9
Q ss_pred hcccCcc----ccccceEEeccccCCchhHHHHhhcccccCCC-ccceeEeeCCC----CcHHHHHHHHHHHhcCCCCCC
Q 047005 95 SKTEGRV----GQTTNVVIGGTVADDSTNEWLALDRKVNSYPT-VRGFTAIGSGG----DDFVQAMVVAVESVIQKPIPE 165 (190)
Q Consensus 95 s~~~grV----~~ttn~v~ggt~~~d~~~eW~~LdEsLiEFPC-dFPIKVMG~a~----ddFv~~VveIVerHapd~fd~ 165 (190)
-|.+.+| -....|..||+- + || .-.+|.||.-+ .++...|.+++++|++= ++
T Consensus 33 gKPe~yvmV~~~~~~~m~fgGs~----------------~-P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgI--p~ 93 (113)
T PTZ00450 33 GKPEDFVMTAFSDSTPMSFQGST----------------A-PAAYVRVEAWGEYAPSKPKMMTPRITAAITKECGI--PA 93 (113)
T ss_pred CCCHHHEEEEEeCCceEEEcCCC----------------C-CEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcCC--Cc
Confidence 4555554 345567888832 2 88 56899999744 36889999999999864 55
Q ss_pred CCeEEe
Q 047005 166 GRVKQK 171 (190)
Q Consensus 166 ~~Vt~R 171 (190)
++|-++
T Consensus 94 dRiYI~ 99 (113)
T PTZ00450 94 ERIYVF 99 (113)
T ss_pred ccEEEE
Confidence 666443
No 29
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=21.56 E-value=22 Score=31.16 Aligned_cols=43 Identities=12% Similarity=0.341 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEee-------CCCCcEEEEEEEEEEe
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKV-------SSRGKYVSVNIGPVQV 188 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~Rp-------SSkGKYvSVTVgpv~V 188 (190)
.++.+.|+++|++.++. ||+..+-.|. -.+|+++.|.|.|..|
T Consensus 93 ~~l~~LVl~~Vr~ILg~-fd~~ell~r~vr~Al~~~~~~~~v~l~V~P~~v 142 (207)
T PF06635_consen 93 QELAELVLEIVRKILGE-FDPDELLVRAVRQALSQIRQGAEVTLRVAPADV 142 (207)
T ss_pred HHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhcCCeEEEEECHHHH
Confidence 57788999999999999 8877665554 3688999999988654
No 30
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=21.09 E-value=2e+02 Score=17.05 Aligned_cols=43 Identities=5% Similarity=0.108 Sum_probs=30.0
Q ss_pred eeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 137 FTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 137 IKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
+++.+...++....|..++.++--+ + ..+....+. +.|..+.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~-i--~~~~~~~~~-~~~~~~~~ 43 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKIN-I--LSVNTRTDD-DGLATIRL 43 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCC-E--EEEEeEECC-CCEEEEEE
Confidence 5788899999999999999988444 3 344454443 56766555
No 31
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=20.73 E-value=2e+02 Score=17.05 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=17.8
Q ss_pred eeEeeCC---CCcHHHHHHHHHHHhc
Q 047005 137 FTAIGSG---GDDFVQAMVVAVESVI 159 (190)
Q Consensus 137 IKVMG~a---~ddFv~~VveIVerHa 159 (190)
++++|.. ..++...+.+++.++-
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~ 28 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAG 28 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCC
Confidence 5667766 5788889999998874
No 32
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=20.29 E-value=1.8e+02 Score=21.94 Aligned_cols=37 Identities=5% Similarity=0.267 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
+.+..+|+++|.+|.. ++++.|++.--++|..-.+-+
T Consensus 41 ~~lk~dil~VIsKYv~--Id~~~v~i~l~~~~~~~~Le~ 77 (84)
T PRK13989 41 PALQKELVAVISKYVK--ISPDDIRVSLERQDNLEVLEV 77 (84)
T ss_pred HHHHHHHHHHHHHhee--eCccceEEEEEeCCCeEEEEE
Confidence 4567789999999976 467788888888887654433
No 33
>PF10733 DUF2525: Protein of unknown function (DUF2525); InterPro: IPR019669 This entry represents the uncharacterised protein family YodD which appear to be restricted to Enterobacteriaceae, and are thought to be stress-related proteins [].
Probab=20.23 E-value=64 Score=23.48 Aligned_cols=40 Identities=30% Similarity=0.441 Sum_probs=24.3
Q ss_pred HHHHHHHhhhhhcccCcccccc--ceEEeccccCCchhHHHHhhcc
Q 047005 84 QEAVLKAISEVSKTEGRVGQTT--NVVIGGTVADDSTNEWLALDRK 127 (190)
Q Consensus 84 ~~a~l~ais~~s~~~grV~~tt--n~v~ggt~~~d~~~eW~~LdEs 127 (190)
-||+|.||.+.|.++=|=.+.- -+-+.|-. -..|++|-|-
T Consensus 2 vdaLLaAI~e~s~~Ev~~~~d~~~~~~vdgr~----~ht~~ELaea 43 (58)
T PF10733_consen 2 VDALLAAINEISEGEVRRSPDDPQRVSVDGRD----YHTWRELAEA 43 (58)
T ss_pred HHHHHHHHhhhcccceecCccCCCceeccCcc----cccHHHHHHH
Confidence 4899999999988776632222 12222211 2378888763
Done!