Query 047005
Match_columns 190
No_of_seqs 121 out of 238
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 11:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rwu_A Hypothetical UPF0250 pr 99.8 1.5E-20 5E-25 144.4 7.7 62 125-190 27-88 (109)
2 2h9z_A Hypothetical protein HP 99.8 7.2E-20 2.5E-24 134.4 1.7 60 124-190 5-65 (86)
3 2kxo_A Cell division topologic 37.1 52 0.0018 24.2 4.7 37 145-183 41-77 (95)
4 2ip6_A PAPB, PEDB; immunity pr 33.2 17 0.00059 28.2 1.6 32 82-121 78-109 (112)
5 1s99_A YKOF; thiamin-binding p 28.1 82 0.0028 26.1 5.0 76 81-158 56-140 (200)
6 1ghh_A DINI, DNA-damage-induci 20.9 1.2E+02 0.0039 21.9 4.0 35 145-182 19-53 (81)
7 3byp_A CZRB protein; membrane 19.9 80 0.0027 21.2 2.9 45 139-183 2-48 (94)
8 3ubt_Y Modification methylase 19.4 50 0.0017 26.8 2.0 37 131-168 69-111 (331)
9 3bld_A Queuine tRNA-ribosyltra 19.2 1.6E+02 0.0054 26.4 5.3 87 83-179 207-294 (386)
10 1j7m_A Matrix metalloproteinas 19.2 29 0.001 24.6 0.5 13 131-143 21-33 (72)
No 1
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=99.82 E-value=1.5e-20 Score=144.42 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=55.3
Q ss_pred hcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005 125 DRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190 (190)
Q Consensus 125 dEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s 190 (190)
.+.+|||||+|||||||.++++|+++|+++|++|+|+.++ +++|+||+|||+|||| .|+|.|
T Consensus 27 l~~lieFPc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~---~~~r~Ss~GkY~Svtv-~v~v~S 88 (109)
T 1rwu_A 27 LNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT---PTVKPSSKGNYHSVSI-TINATH 88 (109)
T ss_dssp SSCSSCCCCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCC---EEEEESSCSSEEEEEE-EECCSS
T ss_pred chhhccCCCCceEEEEEECcHHHHHHHHHHHHHhCCCCCC---ceecCCCCCeEEEEEE-EEEECC
Confidence 3569999999999999999999999999999999994254 4889999999999999 488765
No 2
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=99.76 E-value=7.2e-20 Score=134.36 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=52.9
Q ss_pred hhcccccCCCccceeEeeCCCCc-HHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005 124 LDRKVNSYPTVRGFTAIGSGGDD-FVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190 (190)
Q Consensus 124 LdEsLiEFPCdFPIKVMG~a~dd-Fv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s 190 (190)
+++.++||||+|||||||.++++ |.++|++++++|+ + ++ ..|+||+|||+|||| .|+|.|
T Consensus 5 ~~~~~iefPc~~~~Kvig~~~~~~~~~~V~~v~~~~~-~-~~----~~r~Ss~GkY~Svtv-~i~a~s 65 (86)
T 2h9z_A 5 SKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPF-K-LE----FKNTSKNAKFYSFNV-SMEVSN 65 (86)
T ss_dssp SCCCCCCCCSEEEEEEEECCSCTHHHHHHSTTCCSSE-E-CC----BSCSSCCSSCEEEEE-EEECCS
T ss_pred CCcccccCCCCceEEEEEECCcHHHHHHHHHHHhccC-C-Cc----ccccCCCCeEEEEEE-EEEECC
Confidence 46789999999999999999999 9999999999888 3 33 269999999999999 777764
No 3
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=37.09 E-value=52 Score=24.21 Aligned_cols=37 Identities=3% Similarity=0.150 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
+.+.++|+++|.+|+. ++++.|++.-.+++.+..+-+
T Consensus 41 ~~lk~eIl~VIsKYv~--Id~~~v~V~l~~~~~~~vL~~ 77 (95)
T 2kxo_A 41 PTLRKALMEVLSKYVN--VSLDNIRISQEKQDGMDVLEL 77 (95)
T ss_dssp HHHHHHHHHHHHHHSC--CCTTSEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhee--cchhheEEEEEeCCCcEEEEE
Confidence 5667889999999976 467889998888887654443
No 4
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=33.15 E-value=17 Score=28.19 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=14.3
Q ss_pred CcHHHHHHHhhhhhcccCccccccceEEeccccCCchhHH
Q 047005 82 PPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEW 121 (190)
Q Consensus 82 ~~~~a~l~ais~~s~~~grV~~ttn~v~ggt~~~d~~~eW 121 (190)
+-..++|++|.++|.|+|=- ||.-+-+.+|.|
T Consensus 78 ~eE~~~L~~I~~ia~S~~~W--------GglN~lntTNtW 109 (112)
T 2ip6_A 78 AEENKVLAAINELAHSQKGW--------GEFNMLDTTNTW 109 (112)
T ss_dssp HHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHhcccccc--------cccccccccCCC
Confidence 45689999999999997743 555555667777
No 5
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A
Probab=28.08 E-value=82 Score=26.11 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCcHHHHHHHhhhhhcccCccccccceEEe--ccccCCchhHHH-------HhhcccccCCCccceeEeeCCCCcHHHHH
Q 047005 81 GPPQEAVLKAISEVSKTEGRVGQTTNVVIG--GTVADDSTNEWL-------ALDRKVNSYPTVRGFTAIGSGGDDFVQAM 151 (190)
Q Consensus 81 ~~~~~a~l~ais~~s~~~grV~~ttn~v~g--gt~~~d~~~eW~-------~LdEsLiEFPCdFPIKVMG~a~ddFv~~V 151 (190)
..--+++-++...+.+..+||.....+..| |...+|.-.++. ...+.-++=.|+|-+-.||.. |+.+.|
T Consensus 56 deVm~vl~~a~~aa~~~~~rvv~vik~s~gcPg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~qfslYpmg~~--~ym~~I 133 (200)
T 1s99_A 56 DHVFDAAKAIYLHAANSEQHIVMNGTFSIGCPGDTQGDTYLSKGDKRVNEDAVRGLKAEAPCQFALYPMNEP--DYMGLI 133 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEEEEECCTTCCSCSSCC---CCCTTTTTTTTCCCBCCEEEEEEETTCT--THHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEEEeCCCCCCCCccccccccccccccccccccCCceeEEEEEEeCCCc--cHHHHH
Confidence 345566667777788888899999888887 555555433332 222344556789999999986 899999
Q ss_pred HHHHHHh
Q 047005 152 VVAVESV 158 (190)
Q Consensus 152 veIVerH 158 (190)
.++|+.-
T Consensus 134 ~~~i~~a 140 (200)
T 1s99_A 134 MEAVDIA 140 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
No 6
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=20.94 E-value=1.2e+02 Score=21.92 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEE
Q 047005 145 DDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVN 182 (190)
Q Consensus 145 ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVT 182 (190)
+.|.+++..-|.+++|+ . ...|++|+++ .+=++|+
T Consensus 19 ~aL~~EL~kRl~~~fpd-~-~~~V~Vr~~s-~n~lsV~ 53 (81)
T 1ghh_A 19 DALAGELSRRIQYAFPD-N-EGHVSVRYAA-ANNLSVI 53 (81)
T ss_dssp HHHHHHHHHHHHHHCSS-S-CCEEEEEEES-SCEEEEE
T ss_pred HHHHHHHHHHHHhhCCC-C-CceEEEeecC-CCceeec
Confidence 45677777778888777 3 2479999999 6666664
No 7
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=19.88 E-value=80 Score=21.24 Aligned_cols=45 Identities=9% Similarity=0.228 Sum_probs=26.7
Q ss_pred EeeCC-CCcHHHHHHHHHHHhc-CCCCCCCCeEEeeCCCCcEEEEEE
Q 047005 139 AIGSG-GDDFVQAMVVAVESVI-QKPIPEGRVKQKVSSRGKYVSVNI 183 (190)
Q Consensus 139 VMG~a-~ddFv~~VveIVerHa-pd~fd~~~Vt~RpSSkGKYvSVTV 183 (190)
.||.+ .++..+.|.+++++++ ++..+-..+.++.+....|+++.|
T Consensus 2 Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi 48 (94)
T 3byp_A 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHL 48 (94)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEE
Confidence 46654 6778899999999882 553444567788764444444444
No 8
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=19.37 E-value=50 Score=26.84 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCCccceeEeeCCC------CcHHHHHHHHHHHhcCCCCCCCCe
Q 047005 131 YPTVRGFTAIGSGG------DDFVQAMVVAVESVIQKPIPEGRV 168 (190)
Q Consensus 131 FPCdFPIKVMG~a~------ddFv~~VveIVerHapd~fd~~~V 168 (190)
|||+ +|.+.|... ..+..+++++|+.+=|.+|=-|+|
T Consensus 69 pPCQ-~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV 111 (331)
T 3ubt_Y 69 PPSQ-SWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENV 111 (331)
T ss_dssp CCGG-GTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEEC
T ss_pred CCCC-CcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeee
Confidence 9997 777788532 247788889998887876644444
No 9
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Probab=19.22 E-value=1.6e+02 Score=26.35 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=53.0
Q ss_pred cHHHHHHHhhhhhcccCccccccceEEec-cccCCchhHHHHhhcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCC
Q 047005 83 PQEAVLKAISEVSKTEGRVGQTTNVVIGG-TVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQK 161 (190)
Q Consensus 83 ~~~a~l~ais~~s~~~grV~~ttn~v~gg-t~~~d~~~eW~~LdEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd 161 (190)
-.|.-.+++.++.+.. -....||| -++++..+-|..|+...-.-|-+-|.=+||.+.+ +.|++.|..-++-
T Consensus 207 ~~dLR~~sa~~l~~~~-----~~GyaIGGlsvge~~~~~~~~l~~~~~~LP~~kPRylmGvg~P---~~il~~V~~GvDm 278 (386)
T 3bld_A 207 FENLRQQSADALAEIG-----FDGYAVGGLAGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKP---DDIVGAVERGIDM 278 (386)
T ss_dssp CHHHHHHHHHHHHHHC-----CSEEEECSCSSSSCHHHHHHHHHHHGGGSCTTSCEEETTCCCH---HHHHHHHTTTCCE
T ss_pred CHHHHHHHHHHHHhcC-----CCCeeEcCcccCCCHHHHHHHHHHHHhhCCCCCcEEEeCCCCH---HHHHHHHHcCCCE
Confidence 3444445556665442 33467888 6666667788888888888899999999999864 5667777665544
Q ss_pred CCCCCCeEEeeCCCCcEE
Q 047005 162 PIPEGRVKQKVSSRGKYV 179 (190)
Q Consensus 162 ~fd~~~Vt~RpSSkGKYv 179 (190)
||- ..=.|..+.|.++
T Consensus 279 -FDc-v~ptr~Ar~G~al 294 (386)
T 3bld_A 279 -FDC-VLPTRSGRNGQAF 294 (386)
T ss_dssp -EC-----------CEEC
T ss_pred -EeC-cHHHHHHhCCEEE
Confidence 652 2234666666664
No 10
>1j7m_A Matrix metalloproteinase 2; beta sheet, alpha helix, hydrolase; NMR {Homo sapiens} SCOP: g.14.1.2
Probab=19.18 E-value=29 Score=24.61 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=10.6
Q ss_pred CCCccceeEeeCC
Q 047005 131 YPTVRGFTAIGSG 143 (190)
Q Consensus 131 FPCdFPIKVMG~a 143 (190)
=||.|||+.-|..
T Consensus 21 ~~C~FPF~y~g~~ 33 (72)
T 1j7m_A 21 APCVFPFTFLGNK 33 (72)
T ss_dssp CCCCSSEEETTEE
T ss_pred CccCCCEEECCEE
Confidence 4899999988753
Done!