BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047006
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 95.9 bits (237), Expect = 7e-21, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 57/110 (51%), Gaps = 39/110 (35%)
Query: 66 GEVAGL---NANSMSSKTSETHPWHLH--------------------------------- 89
GEV + NAN M SETHPWHLH
Sbjct: 424 GEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTV 483
Query: 90 ---PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAEGIERLGALPS 136
P+GWT +RF ADNPG W FHCHIE H ++GMGVVFAEG+E++G +P+
Sbjct: 484 VIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPT 533
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAEGI 128
+RFR DNPG W HCHI+ H G VVFAE I
Sbjct: 439 IRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDI 471
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 30/73 (41%)
Query: 84 HPWHLHPHGWT------------------------------ELRFRADNPGAWTFHCHIE 113
HP+HLH H ++ +RF DNPG W FHCHIE
Sbjct: 396 HPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIE 455
Query: 114 SHFYVGMGVVFAE 126
H G+ +VFAE
Sbjct: 456 FHLMNGLAIVFAE 468
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 30/73 (41%)
Query: 84 HPWHLHPHGWT------------------------------ELRFRADNPGAWTFHCHIE 113
HP+HLH H ++ +RF DNPG W FHCHIE
Sbjct: 396 HPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIE 455
Query: 114 SHFYVGMGVVFAE 126
H G+ +VFAE
Sbjct: 456 FHLMNGLAIVFAE 468
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 92 GWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
GW L FR DNPGAW FHCHI H G+ V F E
Sbjct: 485 GWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLE 519
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 92 GWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
GW L FR DNPGAW FHCHI H G+ V F E
Sbjct: 485 GWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLE 519
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 92 GWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
GW L FR DNPGAW FHCHI H G+ V F E
Sbjct: 485 GWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLE 519
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 33/96 (34%)
Query: 66 GEVAGLNANS---MSSKTSETHPWHLHPHGW----------------------------- 93
G V L AN +S HP+HLH H +
Sbjct: 396 GAVISLPANQVIEISIPGGGNHPFHLHGHNFDVVRTPGSSVYNYVNPVRRDVVSIGGGGD 455
Query: 94 -TELRFRADNPGAWTFHCHIESHFYVGMGVVFAEGI 128
RF DNPG W HCHI+ H G+ VVFAE I
Sbjct: 456 NVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDI 491
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAEGIERLGA 133
+RFR DNPG W HCHI+ H G VV AE I + A
Sbjct: 436 IRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPEVAA 473
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 92 GWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
GW L F+ DNPGAW FHCHI H G+ V F E
Sbjct: 526 GWLLLAFKTDNPGAWLFHCHIAWHVSGGLSVDFLE 560
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 49.3 bits (116), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAEGIERLGA 133
+RFR DNPG W HCHI+ H G VV AE I + A
Sbjct: 436 IRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPDVAA 473
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 49.3 bits (116), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAEGIERLGA 133
+RFR DNPG W HCHI+ H G VV AE I + A
Sbjct: 436 IRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPDVAA 473
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 30/100 (30%)
Query: 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLHPHGWT---------------------- 94
+LPL T N +++ HP+HLH H ++
Sbjct: 373 TLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVRSAGSSDYNYVNPVRRDTVS 432
Query: 95 --------ELRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
+RF DN G W HCHI+ H G +VFAE
Sbjct: 433 TGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVFAE 472
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAEGIERLGA 133
+RF+ DNPG W HCHI+ H G +VFAE + + A
Sbjct: 439 IRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADVKA 476
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 32/86 (37%)
Query: 75 SMSSKTSETHPWHLHPHGWT--------------------------------ELRFRADN 102
+ S+ HP+HLH H + +RF+ +N
Sbjct: 386 ATSAAAGGPHPFHLHGHAFAVVRSAGSTTYNYNDPIFRDTVSTGTPAANDNVTIRFKTNN 445
Query: 103 PGAWTFHCHIESHFYVGMGVVFAEGI 128
PG W HCHI+ H G VVFA+ I
Sbjct: 446 PGPWFLHCHIDFHLEAGFAVVFAQDI 471
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAEGI 128
+RF+ DNPG W HCHI+ H G VV AE I
Sbjct: 438 IRFQTDNPGPWFLHCHIDFHLDAGFAVVMAEDI 470
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 46.2 bits (108), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 30/75 (40%)
Query: 84 HPWHLHPHG------------------WTE------------LRFRADNPGAWTFHCHIE 113
HP+HLH H W + +RF DNPG W HCHI+
Sbjct: 397 HPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHID 456
Query: 114 SHFYVGMGVVFAEGI 128
H G +VFAE I
Sbjct: 457 WHLDAGFAIVFAEDI 471
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 44.7 bits (104), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIESH 115
++ P +RF+ADNPG W FHCHIE H
Sbjct: 440 YVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 43.5 bits (101), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 30/73 (41%)
Query: 84 HPWHLHPHGWT------------------------------ELRFRADNPGAWTFHCHIE 113
HP+HLH H + +RF +NPG W HCHI+
Sbjct: 395 HPFHLHGHAFAVVRSAGSSVYNYDNPIFRDVVSTGQPGDNVTIRFETNNPGPWFLHCHID 454
Query: 114 SHFYVGMGVVFAE 126
H G VV AE
Sbjct: 455 FHLDAGFAVVMAE 467
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 42.4 bits (98), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 91 HGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
+G+ + F+ DNPG+W HCHI H GM + F E
Sbjct: 507 NGYLAIAFKLDNPGSWLLHCHIAWHASEGMAMQFVE 542
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
+RF +NPG W HCHI+ H G VV AE
Sbjct: 439 IRFDTNNPGPWFLHCHIDFHLEGGFAVVMAE 469
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
+RF +NPG W HCHI+ H G VV AE
Sbjct: 439 IRFDTNNPGPWFLHCHIDFHLEGGFAVVMAE 469
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 91 HGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE 126
+G+ + F+ DNPG+W HCHI H G+ + F E
Sbjct: 507 NGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFVE 542
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 40.8 bits (94), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAEGIERLGA 133
+RF +NPG W HCHI+ H G VV AE + + A
Sbjct: 439 IRFLTNNPGPWFLHCHIDFHLEGGFAVVQAEDVPDVKA 476
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 96 LRFRADNPGAWTFHCHIESHFYVGMGVVFAEGIERLGA 133
+RF +NPG W HCHI+ H G VV AE + + A
Sbjct: 439 IRFLTNNPGPWFLHCHIDFHLEGGFAVVQAEDVPDVKA 476
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 33.1 bits (74), Expect = 0.053, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 88 LHPHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVF 124
+ P + L PG W HCH+ H + GM +
Sbjct: 999 IFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTY 1035
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 69 AGLNANSMSSKTSETHPWHLHPHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVF 124
A + ++++K +L P + A NPG W C +H G+ F
Sbjct: 278 AFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFF 333
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 33.1 bits (74), Expect = 0.053, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 88 LHPHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVF 124
+ P + L PG W HCH+ H + GM +
Sbjct: 1018 IFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTY 1054
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 69 AGLNANSMSSKTSETHPWHLHPHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVF 124
A + ++++K +L P + A NPG W C +H G+ F
Sbjct: 297 AFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFF 352
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 103 PGAWTFHCHIESHFYVGM-GVVFAEGIERLGALPSSIFE 140
PG W +HCH+++H +GM G+ + G +P+ + E
Sbjct: 262 PGMWMYHCHVQNHSDMGMAGMFLVRNAD--GTMPAGVHE 298
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 104 GAWTFHCHIESHFYVGMGVVF 124
GAW +HCH++SH +GM +F
Sbjct: 282 GAWMYHCHVQSHSDMGMVGLF 302
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 104 GAWTFHCHIESHFYVGMGVVF 124
GAW +HCH++SH +GM +F
Sbjct: 247 GAWMYHCHVQSHSDMGMVGLF 267
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 104 GAWTFHCHIESHFYVGMGVVF 124
GAW +HCH++SH +GM +F
Sbjct: 244 GAWMYHCHVQSHSDMGMVGLF 264
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 104 GAWTFHCHIESHFYVGMGVVF 124
GAW +HCH++SH +GM +F
Sbjct: 245 GAWMYHCHVQSHSDMGMVGLF 265
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 104 GAWTFHCHIESHFYVGMGVVF 124
GAW +HCH++SH +GM +F
Sbjct: 241 GAWMYHCHVQSHSDMGMVGLF 261
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHC 136
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIESHFYVGM 120
++ P+ LR + D G +HCHI H +GM
Sbjct: 440 NVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGM 473
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHC 136
>pdb|1NPJ|A Chain A, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|B Chain B, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|C Chain C, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPN|A Chain A, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|B Chain B, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|C Chain C, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|2PPD|A Chain A, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|B Chain B, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|C Chain C, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPE|A Chain A, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|B Chain B, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|C Chain C, Reduced H145a Mutant Of Afnir Exposed To No
Length = 343
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 117 INPGEKTILRFKATKPGVFVYHC 139
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHC 136
>pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
Length = 343
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 117 INPGEKTILRFKATKPGVFVYHC 139
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1NTD|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant
M150e That Contains Zinc
Length = 343
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 117 INPGEKTILRFKATKPGVFVYHC 139
>pdb|1SJM|A Chain A, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|B Chain B, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|C Chain C, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SNR|A Chain A, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|B Chain B, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|C Chain C, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|2P80|A Chain A, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|B Chain B, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|C Chain C, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2PP7|A Chain A, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|B Chain B, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|C Chain C, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP8|A Chain A, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|B Chain B, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|C Chain C, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP9|A Chain A, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|B Chain B, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|C Chain C, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PPA|A Chain A, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|B Chain B, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|C Chain C, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPC|A Chain A, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|B Chain B, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|C Chain C, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
Length = 341
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1L9T|A Chain A, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|B Chain B, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|C Chain C, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1L9Q|A Chain A, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|B Chain B, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|C Chain C, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1L9S|A Chain A, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|B Chain B, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|C Chain C, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|3H4H|A Chain A, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|B Chain B, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|C Chain C, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 335
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 110 INPGEKTILRFKATKPGVFVYHC 132
>pdb|2B08|A Chain A, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|B Chain B, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|C Chain C, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
Length = 340
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 114 INPGEKTILRFKATKPGVFVYHC 136
>pdb|1L9R|A Chain A, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|B Chain B, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|C Chain C, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|2PPF|A Chain A, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|B Chain B, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|C Chain C, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
Length = 341
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1L9P|A Chain A, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|B Chain B, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|C Chain C, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
Length = 341
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|3H56|A Chain A, Met150leuPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 336
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|2FJS|A Chain A, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|B Chain B, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|C Chain C, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2E86|A Chain A, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|B Chain B, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|C Chain C, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
Length = 337
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1ZDQ|A Chain A, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|B Chain B, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|C Chain C, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDS|A Chain A, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|B Chain B, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|C Chain C, Crystal Structure Of Met150gly Afnir With Acetamide Bound
Length = 336
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|1L9O|A Chain A, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|B Chain B, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|C Chain C, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
Length = 341
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHC 136
>pdb|3H4F|A Chain A, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|B Chain B, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|C Chain C, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
Length = 336
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 88 LHPHGWTELRFRADNPGAWTFHC 110
++P T LRF+A PG + +HC
Sbjct: 111 INPGEKTILRFKATKPGVFVYHC 133
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 95 ELRFRADNPGAWTFHCHIESH 115
++ DNPG W H H+++H
Sbjct: 237 DVILNMDNPGLWMIHDHVDTH 257
>pdb|3CDZ|B Chain B, Crystal Structure Of Human Factor Viii
Length = 684
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 86 WHLHPHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVF 124
++L+P + + G W C I H + GM +F
Sbjct: 328 YNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLF 366
>pdb|2R7E|B Chain B, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 770
Score = 26.2 bits (56), Expect = 6.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 86 WHLHPHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVF 124
++L+P + + G W C I H + GM +F
Sbjct: 414 YNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLF 452
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPHHVVSGM 144
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 108 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 145
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIE 113
+++P LRF+AD G + +HC E
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPE 133
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIE 113
+++P LRF+AD G + +HC E
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPE 133
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIE 113
+++P LRF+AD G + +HC E
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPE 133
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 144
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIE 113
+++P LRF+AD G + +HC E
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPE 133
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIE 113
+++P LRF+AD G + +HC E
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPE 133
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIES----HFYVGM 120
+++P LRF+AD G + +HC E H GM
Sbjct: 113 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGM 150
>pdb|4FMR|A Chain A, Crystal Structure Of A Hypothetical Protein (Bvu_2165)
From Bacteroides Vulgatus Atcc 8482 At 2.25 A Resolution
pdb|4FMR|B Chain B, Crystal Structure Of A Hypothetical Protein (Bvu_2165)
From Bacteroides Vulgatus Atcc 8482 At 2.25 A Resolution
pdb|4FMR|C Chain C, Crystal Structure Of A Hypothetical Protein (Bvu_2165)
From Bacteroides Vulgatus Atcc 8482 At 2.25 A Resolution
pdb|4FMR|D Chain D, Crystal Structure Of A Hypothetical Protein (Bvu_2165)
From Bacteroides Vulgatus Atcc 8482 At 2.25 A Resolution
Length = 265
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 31 GCAHAEAVQNGDYKSTSGARFSLFGCSLPLTETD 64
G + D+ +T+G F+LFG +L + TD
Sbjct: 134 GSGQDATTRATDFSATAGRNFTLFGKNLTVAGTD 167
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHC 110
+++P LRF+AD G + +HC
Sbjct: 108 NVNPGEQATLRFKADRSGTFVYHC 131
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHCHIE 113
+++P LRF+AD G + +HC E
Sbjct: 106 NVNPGEQATLRFKADRSGTFVYHCAPE 132
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 87 HLHPHGWTELRFRADNPGAWTFHC 110
+++P LRF+AD G + +HC
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHC 130
>pdb|2L9L|A Chain A, Nmr Structure Of The Mouse Mfg-e8 C2 Domain
Length = 170
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 16/60 (26%)
Query: 55 GCSLPLTETDWGEVAGLNAN----SMSSKTSETHPWHLHPHGWTELRFRADNPG---AWT 107
GCS PL GL N S S +S W+L GW R DN G AWT
Sbjct: 6 GCSEPL---------GLKNNTIPDSQMSASSSYKTWNLRAFGWYPHLGRLDNQGKINAWT 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,694,453
Number of Sequences: 62578
Number of extensions: 184917
Number of successful extensions: 417
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 121
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)