Query 047006
Match_columns 146
No_of_seqs 176 out of 1279
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02191 L-ascorbate oxidase 99.9 6.4E-27 1.4E-31 207.8 10.0 128 12-146 385-565 (574)
2 PLN02604 oxidoreductase 99.9 2.9E-26 6.4E-31 203.2 10.7 128 12-146 384-565 (566)
3 TIGR03388 ascorbase L-ascorbat 99.9 2.8E-26 6E-31 202.3 10.2 126 12-144 362-540 (541)
4 PLN02792 oxidoreductase 99.9 3.3E-25 7.2E-30 195.5 10.4 120 12-144 358-525 (536)
5 PLN02835 oxidoreductase 99.9 4.6E-25 1E-29 194.7 10.5 119 13-145 368-534 (539)
6 TIGR03389 laccase laccase, pla 99.9 5.8E-25 1.3E-29 193.8 10.7 121 12-142 360-539 (539)
7 PLN02354 copper ion binding / 99.9 6.3E-25 1.4E-29 194.3 10.2 121 12-145 371-541 (552)
8 PLN02991 oxidoreductase 99.9 1.4E-24 3E-29 191.8 10.0 118 12-144 366-532 (543)
9 PLN02168 copper ion binding / 99.9 2.5E-24 5.3E-29 190.3 10.1 118 12-144 371-543 (545)
10 PLN00044 multi-copper oxidase- 99.9 2.2E-24 4.8E-29 192.1 9.2 119 12-144 390-556 (596)
11 PF07731 Cu-oxidase_2: Multico 99.9 2.7E-23 5.8E-28 151.9 6.8 98 18-129 1-137 (138)
12 KOG1263 Multicopper oxidases [ 99.9 7.6E-23 1.6E-27 181.1 10.4 125 11-145 381-558 (563)
13 TIGR03390 ascorbOXfungal L-asc 99.9 1.8E-21 3.9E-26 171.8 9.0 109 13-127 369-532 (538)
14 TIGR01480 copper_res_A copper- 99.6 4.6E-16 9.9E-21 138.9 7.2 66 53-126 490-586 (587)
15 COG2132 SufI Putative multicop 99.5 5.2E-14 1.1E-18 121.7 7.7 63 57-127 360-449 (451)
16 PRK10965 multicopper oxidase; 99.4 1.9E-13 4.1E-18 120.8 6.9 68 52-126 415-522 (523)
17 PRK10883 FtsI repressor; Provi 99.4 4E-13 8.7E-18 117.3 6.4 61 57-127 378-468 (471)
18 TIGR02376 Cu_nitrite_red nitri 99.3 1.1E-11 2.3E-16 103.3 7.2 66 57-128 62-146 (311)
19 PF07732 Cu-oxidase_3: Multico 99.1 2E-10 4.3E-15 83.2 6.1 65 57-129 29-116 (117)
20 PLN02604 oxidoreductase 99.1 4E-10 8.6E-15 100.5 8.1 65 57-128 58-144 (566)
21 TIGR03388 ascorbase L-ascorbat 98.8 2.6E-08 5.7E-13 88.4 8.3 65 57-128 35-121 (541)
22 PLN02191 L-ascorbate oxidase 98.5 3.7E-07 8.1E-12 81.8 8.2 64 57-127 57-142 (574)
23 TIGR03095 rusti_cyanin rusticy 98.4 8.7E-07 1.9E-11 66.8 7.4 63 57-126 55-147 (148)
24 TIGR01480 copper_res_A copper- 98.4 1.4E-06 3E-11 78.5 7.9 64 57-128 79-162 (587)
25 TIGR02376 Cu_nitrite_red nitri 98.3 2.8E-06 6E-11 70.9 7.2 71 49-126 189-295 (311)
26 TIGR03389 laccase laccase, pla 98.2 3.7E-06 8E-11 74.8 8.0 63 57-128 37-122 (539)
27 PLN02835 oxidoreductase 98.2 4.9E-06 1.1E-10 74.2 8.3 67 53-127 53-147 (539)
28 PLN02168 copper ion binding / 98.2 5.2E-06 1.1E-10 74.2 8.0 68 53-128 50-145 (545)
29 PLN00044 multi-copper oxidase- 98.1 7.7E-06 1.7E-10 73.8 8.0 69 53-129 53-149 (596)
30 PLN02354 copper ion binding / 98.1 8.9E-06 1.9E-10 72.8 7.8 69 53-129 51-147 (552)
31 PLN02792 oxidoreductase 98.1 1.1E-05 2.3E-10 72.1 7.4 62 57-126 50-133 (536)
32 PLN02991 oxidoreductase 97.9 3.5E-05 7.6E-10 68.9 7.5 68 53-128 52-147 (543)
33 PRK10965 multicopper oxidase; 97.9 3.6E-05 7.7E-10 68.5 7.1 66 56-129 79-166 (523)
34 TIGR02656 cyanin_plasto plasto 97.9 6.6E-05 1.4E-09 52.5 7.0 56 57-126 20-98 (99)
35 TIGR03096 nitroso_cyanin nitro 97.9 5.5E-05 1.2E-09 56.4 6.7 56 57-120 64-131 (135)
36 PRK10883 FtsI repressor; Provi 97.7 0.00011 2.5E-09 64.5 7.8 67 53-127 70-164 (471)
37 KOG1263 Multicopper oxidases [ 97.7 0.00015 3.2E-09 65.2 8.0 69 53-129 52-148 (563)
38 TIGR03390 ascorbOXfungal L-asc 97.7 0.00014 3E-09 64.9 7.6 64 57-128 42-129 (538)
39 PF13473 Cupredoxin_1: Cupredo 97.4 0.00043 9.4E-09 48.4 5.4 50 57-114 38-96 (104)
40 PF00127 Copper-bind: Copper b 97.2 0.0017 3.6E-08 45.2 6.7 56 57-126 20-98 (99)
41 PRK02888 nitrous-oxide reducta 97.1 0.002 4.4E-08 58.5 7.6 68 56-128 557-634 (635)
42 COG4454 Uncharacterized copper 97.0 0.0032 6.9E-08 48.0 6.6 63 57-127 66-157 (158)
43 PRK02710 plastocyanin; Provisi 97.0 0.0035 7.6E-08 45.2 6.7 56 57-126 50-118 (119)
44 PF00394 Cu-oxidase: Multicopp 97.0 0.0045 9.7E-08 46.4 7.5 61 57-124 63-153 (159)
45 PF00116 COX2: Cytochrome C ox 96.5 0.021 4.6E-07 41.4 7.7 48 57-113 49-105 (120)
46 TIGR02375 pseudoazurin pseudoa 96.1 0.025 5.3E-07 41.1 6.5 66 57-128 18-88 (116)
47 PF06525 SoxE: Sulfocyanin (So 96.1 0.037 8E-07 43.7 7.9 64 57-128 89-187 (196)
48 TIGR02657 amicyanin amicyanin. 96.0 0.047 1E-06 36.7 7.2 56 57-126 14-82 (83)
49 TIGR03094 sulfo_cyanin sulfocy 95.5 0.1 2.3E-06 40.9 8.1 64 57-128 88-186 (195)
50 COG3794 PetE Plastocyanin [Ene 95.2 0.13 2.7E-06 38.1 7.2 59 57-127 57-127 (128)
51 COG2132 SufI Putative multicop 94.2 0.18 4E-06 43.8 7.1 65 57-129 67-151 (451)
52 TIGR03102 halo_cynanin halocya 93.8 0.37 8.1E-06 34.8 6.9 57 57-126 45-114 (115)
53 TIGR02866 CoxB cytochrome c ox 92.8 0.41 8.9E-06 37.4 6.4 58 57-125 120-189 (201)
54 MTH00140 COX2 cytochrome c oxi 90.4 1.6 3.5E-05 34.9 7.5 48 57-113 143-199 (228)
55 COG1622 CyoA Heme/copper-type 85.3 2.7 5.8E-05 34.3 5.9 60 57-125 140-209 (247)
56 TIGR01433 CyoA cytochrome o ub 83.9 2.6 5.6E-05 33.8 5.2 47 56-111 141-196 (226)
57 MTH00008 COX2 cytochrome c oxi 83.2 7.5 0.00016 31.2 7.6 47 57-112 143-198 (228)
58 TIGR01432 QOXA cytochrome aa3 83.2 3 6.5E-05 33.0 5.2 48 55-111 131-187 (217)
59 MTH00038 COX2 cytochrome c oxi 82.9 8.7 0.00019 30.8 7.8 47 57-112 143-198 (229)
60 MTH00023 COX2 cytochrome c oxi 82.1 6.8 0.00015 31.6 7.0 47 57-112 154-209 (240)
61 MTH00168 COX2 cytochrome c oxi 81.2 8.2 0.00018 30.8 7.1 47 57-112 143-198 (225)
62 MTH00047 COX2 cytochrome c oxi 80.2 4.9 0.00011 31.5 5.4 47 57-112 119-174 (194)
63 MTH00117 COX2 cytochrome c oxi 79.9 9.7 0.00021 30.5 7.1 47 57-112 143-198 (227)
64 PTZ00047 cytochrome c oxidase 79.0 6.1 0.00013 30.4 5.4 47 57-112 76-131 (162)
65 MTH00185 COX2 cytochrome c oxi 77.9 14 0.00031 29.6 7.5 47 57-112 143-198 (230)
66 MTH00139 COX2 cytochrome c oxi 77.6 9.2 0.0002 30.5 6.4 46 57-111 143-197 (226)
67 PRK10525 cytochrome o ubiquino 76.7 5.6 0.00012 33.6 5.0 49 54-111 151-208 (315)
68 MTH00051 COX2 cytochrome c oxi 76.1 13 0.00027 30.0 6.8 47 57-112 147-202 (234)
69 MTH00129 COX2 cytochrome c oxi 75.5 17 0.00037 29.2 7.4 47 57-112 143-198 (230)
70 MTH00098 COX2 cytochrome c oxi 73.8 14 0.00031 29.6 6.5 47 57-112 143-198 (227)
71 MTH00154 COX2 cytochrome c oxi 73.7 12 0.00027 29.9 6.2 47 57-112 143-198 (227)
72 TIGR02695 azurin azurin. Azuri 73.5 15 0.00033 27.1 6.1 34 90-124 87-123 (125)
73 MTH00076 COX2 cytochrome c oxi 71.9 26 0.00057 28.0 7.6 47 57-112 143-198 (228)
74 MTH00080 COX2 cytochrome c oxi 68.6 15 0.00033 29.5 5.6 46 57-111 146-200 (231)
75 PF05938 Self-incomp_S1: Plant 62.7 35 0.00077 23.6 6.0 28 87-114 30-57 (110)
76 MTH00027 COX2 cytochrome c oxi 54.3 34 0.00073 28.2 5.3 47 57-112 177-232 (262)
77 TIGR03121 one_C_dehyd_A formyl 43.2 12 0.00025 34.1 1.1 39 82-120 227-278 (556)
78 PLN03148 Blue copper-like prot 42.3 49 0.0011 25.5 4.2 43 83-128 77-119 (167)
79 COG1188 Ribosome-associated he 41.9 28 0.0006 24.7 2.6 26 46-73 31-62 (100)
80 COG5443 FlbT Flagellar biosynt 40.2 24 0.00053 26.4 2.2 28 46-75 10-37 (148)
81 COG4263 NosZ Nitrous oxide red 37.6 46 0.001 30.1 3.8 51 58-113 562-621 (637)
82 PF07378 FlbT: Flagellar prote 35.7 42 0.00092 24.6 2.9 28 46-75 6-34 (126)
83 PRK00794 flbT flagellar biosyn 34.6 42 0.0009 24.9 2.7 28 46-75 9-36 (132)
84 PF02298 Cu_bind_like: Plastoc 32.0 63 0.0014 21.7 3.1 34 85-120 52-85 (85)
85 PRK12791 flbT flagellar biosyn 26.9 72 0.0016 23.6 2.9 29 46-75 8-36 (131)
86 PRK10378 inactive ferrous ion 26.6 2.4E+02 0.0053 24.5 6.4 56 57-126 47-115 (375)
87 cd01304 FMDH_A Formylmethanofu 24.2 30 0.00066 31.4 0.5 40 82-121 223-276 (541)
88 PF02191 OLF: Olfactomedin-lik 22.4 1.7E+02 0.0037 23.7 4.5 24 90-113 120-143 (250)
89 PF06839 zf-GRF: GRF zinc fing 21.3 1E+02 0.0022 18.1 2.2 12 101-112 19-30 (45)
90 KOG4767 Cytochrome c oxidase, 21.3 3.2E+02 0.0069 22.0 5.6 78 10-111 113-200 (231)
91 TIGR02466 conserved hypothetic 20.4 1.6E+02 0.0035 23.1 3.9 20 82-101 107-126 (201)
No 1
>PLN02191 L-ascorbate oxidase
Probab=99.94 E-value=6.4e-27 Score=207.76 Aligned_cols=128 Identities=41% Similarity=0.773 Sum_probs=97.6
Q ss_pred CCCCceeecCCCchh-ccccccc---hhh----hh---hc--CCC---cCCCCceEEEcccccCCCCeeeEEEEEEeCCC
Q 047006 12 VANFLEFVEETDPVR-RICAGCA---HAE----AV---QN--GDY---KSTSGARFSLFGCSLPLTETDWGEVAGLNANS 75 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l-~i~s~~~---~~~----~~---~~--~~~---~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~ 75 (146)
.+|+++|.+|++|+| +++++.. ... .+ ++ +.. .+..+++++ .++.|+. |||+|+|...
T Consensus 385 ~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~--Vdivi~n~~~ 458 (574)
T PLN02191 385 AINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIY----VFPFNVT--VDVIIQNANV 458 (574)
T ss_pred EECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeE----EecCCCE--EEEEEECCCc
Confidence 489999999999998 6654211 110 00 00 000 122456777 8899977 9999999752
Q ss_pred CCCCCCCCCcceec-------------------------------------CCCceEEEEEeCCCeeEEEEecCcccccc
Q 047006 76 MSSKTSETHPWHLH-------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYV 118 (146)
Q Consensus 76 ~~~~~~~~HP~HlH-------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~ 118 (146)
..+.....|||||| ++||++|||+|||||.|+|||||+||+.+
T Consensus 459 ~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~ 538 (574)
T PLN02191 459 LKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHM 538 (574)
T ss_pred ccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhc
Confidence 11112358999999 68999999999999999999999999999
Q ss_pred CceEEEeccccccCCCCcccccCCCCCC
Q 047006 119 GMGVVFAEGIERLGALPSSIFEGCVHRK 146 (146)
Q Consensus 119 GM~~~~~~~~~~~~~~p~~~~~~C~~~~ 146 (146)
||+++|.+++++++++|++++ .|+.|+
T Consensus 539 Gm~~~~~e~~~~~~~~p~~~~-~C~~~~ 565 (574)
T PLN02191 539 GMGVVFAEGLNRIGKIPDEAL-GCGLTK 565 (574)
T ss_pred CCEEEEecChhhccCCCcchh-hhhccc
Confidence 999999999999999999987 898764
No 2
>PLN02604 oxidoreductase
Probab=99.93 E-value=2.9e-26 Score=203.18 Aligned_cols=128 Identities=50% Similarity=0.890 Sum_probs=96.7
Q ss_pred CCCCceeecCCCchh-cccc---ccchhhh---hhc----------CCCcCCCCceEEEcccccCCCCeeeEEEEEEeCC
Q 047006 12 VANFLEFVEETDPVR-RICA---GCAHAEA---VQN----------GDYKSTSGARFSLFGCSLPLTETDWGEVAGLNAN 74 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l-~i~s---~~~~~~~---~~~----------~~~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~ 74 (146)
.+|+++|..|++|+| ++.. +...... .+. .......++.++ .++.|++ |||+|.|..
T Consensus 384 ~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~--Vdivi~n~~ 457 (566)
T PLN02604 384 SVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIY----RLQFNST--VDIILQNAN 457 (566)
T ss_pred EECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEE----EccCCCe--EEEEEECCc
Confidence 379999999999988 5433 2111000 000 001123345667 8899988 999999976
Q ss_pred CCCCCCCCCCcceec-------------------------------------CCCceEEEEEeCCCeeEEEEecCccccc
Q 047006 75 SMSSKTSETHPWHLH-------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFY 117 (146)
Q Consensus 75 ~~~~~~~~~HP~HlH-------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~ 117 (146)
.+.+.....|||||| +++|++|||+|||||.|+|||||+||+.
T Consensus 458 ~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~ 537 (566)
T PLN02604 458 TMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFF 537 (566)
T ss_pred cccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhh
Confidence 432223358999999 6789999999999999999999999999
Q ss_pred cCceEEEeccccccCCCCcccccCCCCCC
Q 047006 118 VGMGVVFAEGIERLGALPSSIFEGCVHRK 146 (146)
Q Consensus 118 ~GM~~~~~~~~~~~~~~p~~~~~~C~~~~ 146 (146)
.||+++|.+++++++++|..++ +|+.-|
T Consensus 538 ~GM~~v~~e~~~~~~~~p~~~~-~C~~~~ 565 (566)
T PLN02604 538 MGMGVVFEEGIERVGKLPSSIM-GCGESK 565 (566)
T ss_pred cCCEEEEeeChhhccCCCCCcC-ccccCC
Confidence 9999999999999999999998 798643
No 3
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.93 E-value=2.8e-26 Score=202.33 Aligned_cols=126 Identities=43% Similarity=0.775 Sum_probs=95.6
Q ss_pred CCCCceeecCCCchh-cccccc---chhh---hhhcC---------CCcCCCCceEEEcccccCCCCeeeEEEEEEeCCC
Q 047006 12 VANFLEFVEETDPVR-RICAGC---AHAE---AVQNG---------DYKSTSGARFSLFGCSLPLTETDWGEVAGLNANS 75 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l-~i~s~~---~~~~---~~~~~---------~~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~ 75 (146)
.+|+++|..|++|+| ++..+. .... ..... ......+++++ .++.|++ |||+|.|...
T Consensus 362 ~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~--Vdivi~n~~~ 435 (541)
T TIGR03388 362 AINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIY----RLKFNTT--VDVILQNANT 435 (541)
T ss_pred EECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEE----EecCCCe--EEEEEECCcc
Confidence 489999999999998 554321 0000 00000 00112345667 8899988 9999999754
Q ss_pred CCCCCCCCCcceec-------------------------------------CCCceEEEEEeCCCeeEEEEecCcccccc
Q 047006 76 MSSKTSETHPWHLH-------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYV 118 (146)
Q Consensus 76 ~~~~~~~~HP~HlH-------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~ 118 (146)
+.+.....|||||| +++|++|||+|||||.|+|||||+||+.+
T Consensus 436 ~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~ 515 (541)
T TIGR03388 436 LNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHM 515 (541)
T ss_pred ccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhc
Confidence 32112358999999 67899999999999999999999999999
Q ss_pred CceEEEeccccccCCCCcccccCCCC
Q 047006 119 GMGVVFAEGIERLGALPSSIFEGCVH 144 (146)
Q Consensus 119 GM~~~~~~~~~~~~~~p~~~~~~C~~ 144 (146)
||+++|.+++++++.+|++++ +|+.
T Consensus 516 GM~~~~~e~~~~~~~~P~~~~-~C~~ 540 (541)
T TIGR03388 516 GMGVVFAEGVEKVGKLPKEAL-GCGL 540 (541)
T ss_pred ccEEEEeccccccCCCCcccc-CCCC
Confidence 999999999999999999998 8973
No 4
>PLN02792 oxidoreductase
Probab=99.92 E-value=3.3e-25 Score=195.51 Aligned_cols=120 Identities=18% Similarity=0.309 Sum_probs=92.9
Q ss_pred CCCCceeecCCCchhcc----ccccchhhhhhcC---CCcCCCCceEEEcccccCCCCeeeEEEEEEeCCCCCCCCCCCC
Q 047006 12 VANFLEFVEETDPVRRI----CAGCAHAEAVQNG---DYKSTSGARFSLFGCSLPLTETDWGEVAGLNANSMSSKTSETH 84 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l~i----~s~~~~~~~~~~~---~~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~~~~H 84 (146)
.+|+++|++|++|+|.. ++|......+... ......+++++ .++.|+. |||+|+|.... .|
T Consensus 358 ~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~----~~~~~~~--VeiViqn~~~~------~H 425 (536)
T PLN02792 358 AINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVM----GAHHNAF--LEIIFQNREKI------VQ 425 (536)
T ss_pred EECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEE----EcCCCCE--EEEEEECCCCC------CC
Confidence 48999999999999831 2233221111100 00123467888 8999988 99999997654 89
Q ss_pred cceec------------------------------------CCCceEEEEEeCCCeeEEEEecCccccccCceEEEe---
Q 047006 85 PWHLH------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFA--- 125 (146)
Q Consensus 85 P~HlH------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~--- 125 (146)
||||| ++||++|||+|||||+|+||||+..|+..||+++|.
T Consensus 426 P~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~ 505 (536)
T PLN02792 426 SYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYS 505 (536)
T ss_pred CeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEcc
Confidence 99999 789999999999999999999999999999999995
Q ss_pred --ccccccCCCCcccccCCCC
Q 047006 126 --EGIERLGALPSSIFEGCVH 144 (146)
Q Consensus 126 --~~~~~~~~~p~~~~~~C~~ 144 (146)
++.++++++|++++ .|+.
T Consensus 506 ~~~~~~~~~~pP~~~~-~Cg~ 525 (536)
T PLN02792 506 PTHSLKDEYPLPKNAL-LCGR 525 (536)
T ss_pred CCCccccccCCCcccC-cccc
Confidence 34557788999998 9974
No 5
>PLN02835 oxidoreductase
Probab=99.92 E-value=4.6e-25 Score=194.72 Aligned_cols=119 Identities=20% Similarity=0.387 Sum_probs=91.1
Q ss_pred CCCceeecCCCchh-ccc---cccchhh---hhhcCCCcCCCCceEEEcccccCCCCeeeEEEEEEeCCCCCCCCCCCCc
Q 047006 13 ANFLEFVEETDPVR-RIC---AGCAHAE---AVQNGDYKSTSGARFSLFGCSLPLTETDWGEVAGLNANSMSSKTSETHP 85 (146)
Q Consensus 13 ~n~~~f~~pt~p~l-~i~---s~~~~~~---~~~~~~~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~~~~HP 85 (146)
+|+++|++|++|+| ... ++..... ....+. ....+++++ .++.|+. |||+|+|.... .||
T Consensus 368 iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~----~~~~~~~--Veivi~N~~~~------~HP 434 (539)
T PLN02835 368 VNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGG-PAFVATSVM----QTSLHDF--LEVVFQNNEKT------MQS 434 (539)
T ss_pred ECCcccCCCCCChhhhhhhcCCCccccCccccCCCCC-ccccCCeEE----EcCCCCE--EEEEEECCCCC------CCC
Confidence 89999999999987 221 1111100 111111 122346777 8899977 99999998654 899
Q ss_pred ceec------------------------------------CCCceEEEEEeCCCeeEEEEecCccccccCceEEEec---
Q 047006 86 WHLH------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE--- 126 (146)
Q Consensus 86 ~HlH------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~~--- 126 (146)
|||| ++||++|||+|||||.|+|||||.+|+..||+++|.+
T Consensus 435 ~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~ 514 (539)
T PLN02835 435 WHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQ 514 (539)
T ss_pred CCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccC
Confidence 9999 6799999999999999999999999999999999943
Q ss_pred --cccccCCCCcccccCCCCC
Q 047006 127 --GIERLGALPSSIFEGCVHR 145 (146)
Q Consensus 127 --~~~~~~~~p~~~~~~C~~~ 145 (146)
+.++++++|++++ .|+.-
T Consensus 515 ~~~~~~~~~~P~~~~-~Cg~~ 534 (539)
T PLN02835 515 VHSLANEYDIPDNAL-LCGKA 534 (539)
T ss_pred CCccccccCCCcccc-ccccC
Confidence 3467788999998 89743
No 6
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.92 E-value=5.8e-25 Score=193.84 Aligned_cols=121 Identities=32% Similarity=0.548 Sum_probs=89.5
Q ss_pred CCCCceeecCCCchh-cccc---ccch-------hhhh-hcCCC-----cCCCCceEEEcccccCCCCeeeEEEEEEeCC
Q 047006 12 VANFLEFVEETDPVR-RICA---GCAH-------AEAV-QNGDY-----KSTSGARFSLFGCSLPLTETDWGEVAGLNAN 74 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l-~i~s---~~~~-------~~~~-~~~~~-----~~~~~~~~~ing~~l~~g~~~~Veivl~N~~ 74 (146)
.+|+++|..|++|+| ++.. +... +... .+++. .+..+++++ .++.|++ |||+|.|.+
T Consensus 360 ~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~--V~ivi~n~~ 433 (539)
T TIGR03389 360 SMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVV----RLKFNST--VELVLQDTS 433 (539)
T ss_pred EECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCceEE----EecCCCE--EEEEEecCC
Confidence 489999999999988 3322 1100 0000 01111 122345667 8999988 999999975
Q ss_pred CCCCCCCCCCcceec-------------------------------------CCCceEEEEEeCCCeeEEEEecCccccc
Q 047006 75 SMSSKTSETHPWHLH-------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFY 117 (146)
Q Consensus 75 ~~~~~~~~~HP~HlH-------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~ 117 (146)
.+ ....|||||| +++|++|||+|||||.|+|||||+||++
T Consensus 434 ~~---~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~ 510 (539)
T TIGR03389 434 IL---GSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTT 510 (539)
T ss_pred cC---CCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhh
Confidence 32 1248999999 5789999999999999999999999999
Q ss_pred cCceEEEecc-----ccccCCCCcccccCC
Q 047006 118 VGMGVVFAEG-----IERLGALPSSIFEGC 142 (146)
Q Consensus 118 ~GM~~~~~~~-----~~~~~~~p~~~~~~C 142 (146)
+||+++|.+. .++++++|+.++ .|
T Consensus 511 ~Gm~~~~~~~~~~~~~~~~~~~p~~~~-~c 539 (539)
T TIGR03389 511 WGLKMAFLVDNGKGPNQSLLPPPSDLP-SC 539 (539)
T ss_pred hcceEEEEEccCCCCccccCCCCccCC-CC
Confidence 9999999653 456788999998 88
No 7
>PLN02354 copper ion binding / oxidoreductase
Probab=99.92 E-value=6.3e-25 Score=194.31 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=89.4
Q ss_pred CCCCceeecCCCchh-ccc----cccchhhhhhc---C-CCcCCCCceEEEcccccCCCCeeeEEEEEEeCCCCCCCCCC
Q 047006 12 VANFLEFVEETDPVR-RIC----AGCAHAEAVQN---G-DYKSTSGARFSLFGCSLPLTETDWGEVAGLNANSMSSKTSE 82 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l-~i~----s~~~~~~~~~~---~-~~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~~~ 82 (146)
.+|+++|++|++|+| .+. .|....+.... . ......+++++ .++.|+. |||+|+|....
T Consensus 371 ~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~----~~~~~~~--VeiVi~n~~~~------ 438 (552)
T PLN02354 371 ALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVL----NITFRTF--VEIIFENHEKS------ 438 (552)
T ss_pred EECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeE----EcCCCCE--EEEEEeCCCCC------
Confidence 489999999999998 432 23211110000 0 00123466777 8999988 99999998644
Q ss_pred CCcceec------------------------------------CCCceEEEEEeCCCeeEEEEecCccccccCceEEEe-
Q 047006 83 THPWHLH------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFA- 125 (146)
Q Consensus 83 ~HP~HlH------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~- 125 (146)
.|||||| ++||++|||+|||||+|+||||+..|+.+||+++|.
T Consensus 439 ~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v 518 (552)
T PLN02354 439 MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASV 518 (552)
T ss_pred CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEE
Confidence 8999999 689999999999999999999998899999887774
Q ss_pred -cccccc---CCCCcccccCCCCC
Q 047006 126 -EGIERL---GALPSSIFEGCVHR 145 (146)
Q Consensus 126 -~~~~~~---~~~p~~~~~~C~~~ 145 (146)
++++.+ .++|++.+ .|+..
T Consensus 519 ~~~~~~~~~~~~~P~~~~-~C~~~ 541 (552)
T PLN02354 519 LSPERSLRDEYNMPENAL-LCGKV 541 (552)
T ss_pred eCCccccCcCCCCCcccc-ccccc
Confidence 444444 35888888 89754
No 8
>PLN02991 oxidoreductase
Probab=99.91 E-value=1.4e-24 Score=191.77 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=91.2
Q ss_pred CCCCceeecCCCchhcc----ccccchhh----hhhcCCCcCCCCceEEEcccccCCCCeeeEEEEEEeCCCCCCCCCCC
Q 047006 12 VANFLEFVEETDPVRRI----CAGCAHAE----AVQNGDYKSTSGARFSLFGCSLPLTETDWGEVAGLNANSMSSKTSET 83 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l~i----~s~~~~~~----~~~~~~~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~~~~ 83 (146)
.+|+++|.+|++|+|.. ++|...+. ...++. ...+++++ .++.|+. |||+|+|.... .
T Consensus 366 ~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~v~----~~~~~~~--VeiViqn~~~~------~ 431 (543)
T PLN02991 366 AVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGA--IFPVTSVM----QTDYKAF--VEIVFENWEDI------V 431 (543)
T ss_pred EECCCccCCCCCChhhhhhhcccCccccccccccCCCCc--cccCCcEE----EcCCCCE--EEEEEeCCCCC------C
Confidence 48999999999999821 22322211 011111 22456677 8899988 99999997654 8
Q ss_pred Ccceec------------------------------------CCCceEEEEEeCCCeeEEEEecCccccccCceEEEe--
Q 047006 84 HPWHLH------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFA-- 125 (146)
Q Consensus 84 HP~HlH------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~-- 125 (146)
|||||| ++||++|||+|||||.|+|||||..|+..||++++.
T Consensus 432 HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~ 511 (543)
T PLN02991 432 QTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVY 511 (543)
T ss_pred CCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEec
Confidence 999999 689999999999999999999999999999999994
Q ss_pred ---ccccccCCCCcccccCCCC
Q 047006 126 ---EGIERLGALPSSIFEGCVH 144 (146)
Q Consensus 126 ---~~~~~~~~~p~~~~~~C~~ 144 (146)
++.++++++|++++ .|+.
T Consensus 512 ~~~~~~~~~~~~P~~~~-~Cg~ 532 (543)
T PLN02991 512 TTSTSLRDEYLIPKNAL-LCGR 532 (543)
T ss_pred CCCCccccccCCCcccC-cccc
Confidence 34556778999998 9963
No 9
>PLN02168 copper ion binding / pectinesterase
Probab=99.91 E-value=2.5e-24 Score=190.29 Aligned_cols=118 Identities=17% Similarity=0.356 Sum_probs=85.1
Q ss_pred CCCCceeecCCCchhc-cccccchhhhhhcCCC-------cCCCCceEEEcccccCCCCeeeEEEEEEeCCCCCCCCCCC
Q 047006 12 VANFLEFVEETDPVRR-ICAGCAHAEAVQNGDY-------KSTSGARFSLFGCSLPLTETDWGEVAGLNANSMSSKTSET 83 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l~-i~s~~~~~~~~~~~~~-------~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~~~~ 83 (146)
.+|+++|..|++|+|. .... ..+.+..++. ....+++++ .++.|+. |||+|+|.... .
T Consensus 371 ~iN~~s~~~p~~P~l~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~v~----~~~~~~~--VeiViqn~~~~------~ 436 (545)
T PLN02168 371 TINGVSFVYPGTPLKLVDHFQ--LNDTIIPGMFPVYPSNKTPTLGTSVV----DIHYKDF--YHIVFQNPLFS------L 436 (545)
T ss_pred EECCCccCCCCCchhhhhhcc--cccccccCCCccCCCcCccccCceEE----EecCCCE--EEEEEeCCCCC------C
Confidence 4899999999999872 1000 0001111111 112357777 8999988 99999997644 8
Q ss_pred Ccceec------------------------------------CCCceEEEEEeCCCeeEEEEecCccccccCceEEEec-
Q 047006 84 HPWHLH------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE- 126 (146)
Q Consensus 84 HP~HlH------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~~- 126 (146)
|||||| ++||++|||+|||||+|+|||||+.|+..||++++.+
T Consensus 437 HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~ 516 (545)
T PLN02168 437 ESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVK 516 (545)
T ss_pred CCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEE
Confidence 999999 7899999999999999999999977777766666633
Q ss_pred -----c-----ccccCCCCcccccCCCC
Q 047006 127 -----G-----IERLGALPSSIFEGCVH 144 (146)
Q Consensus 127 -----~-----~~~~~~~p~~~~~~C~~ 144 (146)
+ .+.++++|++++ .|+.
T Consensus 517 ~~~~e~p~~~~~~~~~~~P~~~~-~cg~ 543 (545)
T PLN02168 517 GEGEEDPSTIPVRDENPIPGNVI-RCGK 543 (545)
T ss_pred cccccCccccccccccCCChhhc-cccc
Confidence 2 234556899999 8973
No 10
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=192.06 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=90.9
Q ss_pred CCCCceeecCCCchh--cccc--ccchhhhhhc--CCCcCCCCceEEEcccccCCCCeeeEEEEEEeCCCCCCCCCCCCc
Q 047006 12 VANFLEFVEETDPVR--RICA--GCAHAEAVQN--GDYKSTSGARFSLFGCSLPLTETDWGEVAGLNANSMSSKTSETHP 85 (146)
Q Consensus 12 ~~n~~~f~~pt~p~l--~i~s--~~~~~~~~~~--~~~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~~~~HP 85 (146)
.+||++|++|++|+| .+.+ +....+ +.. .......+++++ .++.|+. |||+|+|.... +||
T Consensus 390 s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~-fp~~pp~~~~~~~t~v~----~~~~n~~--VeiV~qn~~~~------~HP 456 (596)
T PLN00044 390 TLNEISYIAPSTPLMLAQIFNVPGVFKLD-FPNHPMNRLPKLDTSII----NGTYKGF--MEIIFQNNATN------VQS 456 (596)
T ss_pred EECcccCCCCCCcchhhhhccCCCcccCC-CCCCCCccccccCceEE----EcCCCCE--EEEEEeCCCCC------CCC
Confidence 589999999999998 2322 111100 000 001123478888 9999977 99999997543 899
Q ss_pred ceec------------------------------------CCCceEEEEEeCCCeeEEEEecCccccccCceEEEec---
Q 047006 86 WHLH------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAE--- 126 (146)
Q Consensus 86 ~HlH------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~~--- 126 (146)
|||| ++||++|||+|||||+|++|||+..|+..||+++|.+
T Consensus 457 ~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~ 536 (596)
T PLN00044 457 YHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNP 536 (596)
T ss_pred eeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecC
Confidence 9999 7899999999999999999999999999999999842
Q ss_pred --c-ccccCCCCcccccCCCC
Q 047006 127 --G-IERLGALPSSIFEGCVH 144 (146)
Q Consensus 127 --~-~~~~~~~p~~~~~~C~~ 144 (146)
. .++++++|++++ .|+.
T Consensus 537 ~~~~~~~~~~pP~~~~-~Cg~ 556 (596)
T PLN00044 537 EDNSNKTVLPIPDNAI-FCGA 556 (596)
T ss_pred CCCccccccCCCcccC-cccc
Confidence 2 356788999998 9974
No 11
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.89 E-value=2.7e-23 Score=151.92 Aligned_cols=98 Identities=36% Similarity=0.651 Sum_probs=71.7
Q ss_pred eecCCCchh-cccccc--chhhhhhcCCCcCCCCceEEEcccccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----
Q 047006 18 FVEETDPVR-RICAGC--AHAEAVQNGDYKSTSGARFSLFGCSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH----- 89 (146)
Q Consensus 18 f~~pt~p~l-~i~s~~--~~~~~~~~~~~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH----- 89 (146)
|++|+.|.| ++.... ....... +. .+..+.... .++.|+. |||+|.|.+.. .||||||
T Consensus 1 ~~~~~~p~l~~i~~~~~~~~~~~~~-~~-~~~~~~~~~----~~~~g~~--v~~~l~N~~~~------~Hp~HlHG~~F~ 66 (138)
T PF07731_consen 1 YVNPKTPTLFQITGHMNMNGNNGID-NN-PFFGNTPVI----EVKNGDV--VEIVLQNNGSM------PHPFHLHGHSFQ 66 (138)
T ss_dssp ----SS-HHHHHTT-ECTCCHTTEE-ST-TSSSTTSEE----EEETTSE--EEEEEEECTTS------SEEEEETTSEEE
T ss_pred CcCcCCCCeEeecCccccccccccc-cC-ccCCCcceE----EEeCCCE--EEEEEECCCCC------ccceEEEeeEEE
Confidence 788999998 653211 0111111 12 334556777 8999988 99999998766 9999999
Q ss_pred -------------------------------CCCceEEEEEeCCCeeEEEEecCccccccCceEEEecccc
Q 047006 90 -------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAEGIE 129 (146)
Q Consensus 90 -------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~~~~~ 129 (146)
++++++|||+++|||.|+||||+++|++.||+++|.+.++
T Consensus 67 vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 67 VLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred eeecCCcccccccccccccccCcccccccccceeEEEEEEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 6788999999999999999999999999999999987653
No 12
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=7.6e-23 Score=181.14 Aligned_cols=125 Identities=36% Similarity=0.602 Sum_probs=95.0
Q ss_pred CCCCCceeecCCCchh-c----cccccchhhhhhc----CCCc-CCCCceEEEcccccCCCCeeeEEEEEEeCCCCCCCC
Q 047006 11 PVANFLEFVEETDPVR-R----ICAGCAHAEAVQN----GDYK-STSGARFSLFGCSLPLTETDWGEVAGLNANSMSSKT 80 (146)
Q Consensus 11 ~~~n~~~f~~pt~p~l-~----i~s~~~~~~~~~~----~~~~-~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~ 80 (146)
-.+|+++|+.|+.|++ . +..+....+..+. .+.. +..+++++ .+++++. |||+|+|.+.. .
T Consensus 381 ~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~----~~~~~~~--veIVlqN~~~~---~ 451 (563)
T KOG1263|consen 381 ASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVM----KLEFNSF--VEIVLQNTSTG---T 451 (563)
T ss_pred EEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccceEE----EeecCCE--EEEEEeCCccc---c
Confidence 4689999999999887 2 2222111110011 1101 24677888 9999999 99999998866 2
Q ss_pred CCCCcceec--------------------------------------CCCceEEEEEeCCCeeEEEEecCccccccCceE
Q 047006 81 SETHPWHLH--------------------------------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGV 122 (146)
Q Consensus 81 ~~~HP~HlH--------------------------------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~ 122 (146)
...|||||| |++|++|||+|||||.|++|||+++|+..||++
T Consensus 452 ~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~ 531 (563)
T KOG1263|consen 452 QENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMET 531 (563)
T ss_pred CCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeE
Confidence 347999999 899999999999999999999999999999999
Q ss_pred EEeccccc-----cCCCCcccccCCCCC
Q 047006 123 VFAEGIER-----LGALPSSIFEGCVHR 145 (146)
Q Consensus 123 ~~~~~~~~-----~~~~p~~~~~~C~~~ 145 (146)
+|.+.... +.++|.+.+ +|+.-
T Consensus 532 ~f~V~~~~~~~~~~~~~P~~~~-~cg~~ 558 (563)
T KOG1263|consen 532 VFIVGNGEESLSSEYPPPKNLP-KCGRA 558 (563)
T ss_pred EEEEeCCCccCCcCCCCCCCcc-ccccc
Confidence 99875433 346889998 99853
No 13
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.85 E-value=1.8e-21 Score=171.84 Aligned_cols=109 Identities=31% Similarity=0.515 Sum_probs=78.8
Q ss_pred CCCceeec--CCCchh-ccccccchhhhhhcCC---CcCCCCceEEEcccccCCCCeeeEEEEEEeCCCCC--CCCCCCC
Q 047006 13 ANFLEFVE--ETDPVR-RICAGCAHAEAVQNGD---YKSTSGARFSLFGCSLPLTETDWGEVAGLNANSMS--SKTSETH 84 (146)
Q Consensus 13 ~n~~~f~~--pt~p~l-~i~s~~~~~~~~~~~~---~~~~~~~~~~ing~~l~~g~~~~Veivl~N~~~~~--~~~~~~H 84 (146)
+|+++|.. |+.|+| .++++........+.. ..+..+++++ .++.|+. |||+|+|..... ......|
T Consensus 369 ~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--V~ivi~n~~~~~~~~~~~~~H 442 (538)
T TIGR03390 369 QNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPETRAF----PAKVGEV--LEIVWQNTGSYTGPNGGVDTH 442 (538)
T ss_pred ECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcCceEE----EcCCCCE--EEEEEECCcccccCCCCCCCC
Confidence 79999986 789998 6655431111001110 1123455667 8899987 999999974210 0112489
Q ss_pred cceec------------------------------------C-----------CCceEEEEEeCCCeeEEEEecCccccc
Q 047006 85 PWHLH------------------------------------P-----------HGWTELRFRADNPGAWTFHCHIESHFY 117 (146)
Q Consensus 85 P~HlH------------------------------------~-----------~~~~~irf~adnpG~W~lHCHi~~H~~ 117 (146)
||||| + ++|++|||++||||.|+|||||.||+.
T Consensus 443 P~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~ 522 (538)
T TIGR03390 443 PFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMV 522 (538)
T ss_pred CeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhh
Confidence 99999 2 478999999999999999999999999
Q ss_pred cCceEEEecc
Q 047006 118 VGMGVVFAEG 127 (146)
Q Consensus 118 ~GM~~~~~~~ 127 (146)
+||+++|.+.
T Consensus 523 ~Gm~~~~~~~ 532 (538)
T TIGR03390 523 MGMQTVWVFG 532 (538)
T ss_pred ccceEEEEeC
Confidence 9999999764
No 14
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.63 E-value=4.6e-16 Score=138.90 Aligned_cols=66 Identities=35% Similarity=0.554 Sum_probs=60.2
Q ss_pred Eccc--------ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----------------------CCCceEEEEEeC
Q 047006 53 LFGC--------SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-----------------------PHGWTELRFRAD 101 (146)
Q Consensus 53 ing~--------~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-----------------------~~~~~~irf~ad 101 (146)
|||+ .++.|++ |+|+|.|...+ .|||||| |++.++++|+||
T Consensus 490 iNG~~~~~~~pl~v~~Ger--vri~l~N~t~~------~HpmHlHG~~f~v~~~~G~~~~~~dTv~V~Pg~t~~~~f~ad 561 (587)
T TIGR01480 490 FDGEAFGLKTPLRFNYGER--LRVVLVNDTMM------AHPIHLHGMWSELEDGQGEFQVRKHTVDVPPGGKRSFRVTAD 561 (587)
T ss_pred ECCccCCCCCceEecCCCE--EEEEEECCCCC------CcceeEcCceeeeecCCCcccccCCceeeCCCCEEEEEEECC
Confidence 7874 4788999 99999998876 9999999 688899999999
Q ss_pred CCeeEEEEecCccccccCceEEEec
Q 047006 102 NPGAWTFHCHIESHFYVGMGVVFAE 126 (146)
Q Consensus 102 npG~W~lHCHi~~H~~~GM~~~~~~ 126 (146)
|||.|+||||+..|+..||+..|.+
T Consensus 562 ~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 562 ALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999999999999999998854
No 15
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.49 E-value=5.2e-14 Score=121.68 Aligned_cols=63 Identities=38% Similarity=0.571 Sum_probs=57.2
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------------CCCceEEEEEeCCCeeEEEE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------------PHGWTELRFRADNPGAWTFH 109 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------------~~~~~~irf~adnpG~W~lH 109 (146)
.++.|++ ++|+|.|...+ .||||+| +++.+.++|.+++||.|+||
T Consensus 360 ~~~~G~~--~~~~i~n~~~~------~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~H 431 (451)
T COG2132 360 IAKAGTR--ERWVLTNDTPM------PHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFH 431 (451)
T ss_pred eecCCCE--EEEEEECCCCC------ccCeEEcCceEEEEecCCCcccccCccceEEEeCCCeEEEEEEeCCCCCceEEe
Confidence 5788988 99999998876 9999999 66778999999999999999
Q ss_pred ecCccccccCceEEEecc
Q 047006 110 CHIESHFYVGMGVVFAEG 127 (146)
Q Consensus 110 CHi~~H~~~GM~~~~~~~ 127 (146)
||+++|++.||+..+.+.
T Consensus 432 CH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 432 CHILEHEDNGMMGQFGVV 449 (451)
T ss_pred ccchhHhhcCCeeEEEec
Confidence 999999999999888654
No 16
>PRK10965 multicopper oxidase; Provisional
Probab=99.43 E-value=1.9e-13 Score=120.77 Aligned_cols=68 Identities=25% Similarity=0.363 Sum_probs=52.9
Q ss_pred EEcccc---------cCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------------CCCceE
Q 047006 52 SLFGCS---------LPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------------PHGWTE 95 (146)
Q Consensus 52 ~ing~~---------l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------------~~~~~~ 95 (146)
.|||+. ++.|++ ++|.|.|.+.+ ..|||||| +.+.+.
T Consensus 415 ~ING~~~~~~~~~~~~~~G~~--e~w~i~N~~~~-----~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~~~~~ 487 (523)
T PRK10965 415 KINGKAFDMNKPMFAAKKGQY--ERWVISGVGDM-----MLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEGGRSE 487 (523)
T ss_pred cCCCeECCCCCcceecCCCCE--EEEEEEeCCCC-----CccCeEEeCcEEEEEEecCCCCCccccccccEEEECCcEEE
Confidence 488854 578877 99999998743 28999999 223444
Q ss_pred EEEE----eCCCeeEEEEecCccccccCceEEEec
Q 047006 96 LRFR----ADNPGAWTFHCHIESHFYVGMGVVFAE 126 (146)
Q Consensus 96 irf~----adnpG~W~lHCHi~~H~~~GM~~~~~~ 126 (146)
|+++ ++++|.|+||||+++|.+.||++.|.+
T Consensus 488 i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 488 VLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred EEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 4444 457789999999999999999999864
No 17
>PRK10883 FtsI repressor; Provisional
Probab=99.40 E-value=4e-13 Score=117.33 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=51.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-------------C-------------CCceEEEEEeCCCe----eE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-------------P-------------HGWTELRFRADNPG----AW 106 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-------------~-------------~~~~~irf~adnpG----~W 106 (146)
.++.|++ ++|.|.|. + .|||||| + .+.+.|+++++++| .|
T Consensus 378 ~~~~g~~--e~W~~~n~--~------~HP~HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v~~~v~i~~~f~~~~~~~~~~ 447 (471)
T PRK10883 378 TAQQGTW--ERWTVRAD--M------PQAFHIEGVMFLIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPF 447 (471)
T ss_pred ecCCCCE--EEEEEECC--C------CcCEeECCccEEEEEecCCCCCccccCcCcEEEcCCeEEEEEEecCCCCCCCcE
Confidence 3678877 99999775 3 7999999 1 12378888999988 89
Q ss_pred EEEecCccccccCceEEEecc
Q 047006 107 TFHCHIESHFYVGMGVVFAEG 127 (146)
Q Consensus 107 ~lHCHi~~H~~~GM~~~~~~~ 127 (146)
+|||||++|.+.||++.|.+.
T Consensus 448 m~HCHiLeHeD~GMM~~~~V~ 468 (471)
T PRK10883 448 LFYSQTLEMADRGSIGQLLVN 468 (471)
T ss_pred EeecccccccccCCccCeEEe
Confidence 999999999999999999763
No 18
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.26 E-value=1.1e-11 Score=103.26 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=57.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------CCCceEEEEEeCCCeeEEEEec----Cccccc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------PHGWTELRFRADNPGAWTFHCH----IESHFY 117 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------~~~~~~irf~adnpG~W~lHCH----i~~H~~ 117 (146)
+++.|++ |+|.|.|.... ...|++|+| ||+.++++|.+++||.|+|||| +..|..
T Consensus 62 rv~~Gd~--v~v~v~N~~~~----~~~h~~h~H~~~~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~ 135 (311)
T TIGR02376 62 RVHEGDY--VELTLINPPTN----TMPHNVDFHAATGALGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVV 135 (311)
T ss_pred EEECCCE--EEEEEEeCCCC----CCceeeeecCCCccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhh
Confidence 5789988 99999997421 138999999 7888999999999999999999 567999
Q ss_pred cCceEEEeccc
Q 047006 118 VGMGVVFAEGI 128 (146)
Q Consensus 118 ~GM~~~~~~~~ 128 (146)
.||++.|++.+
T Consensus 136 ~Gl~G~liV~~ 146 (311)
T TIGR02376 136 SGMNGAIMVLP 146 (311)
T ss_pred cCcceEEEeec
Confidence 99999997754
No 19
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.10 E-value=2e-10 Score=83.21 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=57.4
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec----------------------CCCceEEEEEeCC-CeeEEEEecCc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH----------------------PHGWTELRFRADN-PGAWTFHCHIE 113 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH----------------------~~~~~~irf~adn-pG~W~lHCHi~ 113 (146)
+++.|++ |+|.+.|.... ++.||+| ||+..+.+|.++. +|.++||||..
T Consensus 29 ~v~~Gd~--v~i~~~N~l~~------~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~ 100 (117)
T PF07732_consen 29 RVREGDT--VRITVTNNLDE------PTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVH 100 (117)
T ss_dssp EEETTEE--EEEEEEEESSS------GBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECST
T ss_pred EEEcCCe--eEEEEEecccc------ccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCC
Confidence 6899988 99999998754 8999999 6788999999999 99999999999
Q ss_pred cccccCceEEEecccc
Q 047006 114 SHFYVGMGVVFAEGIE 129 (146)
Q Consensus 114 ~H~~~GM~~~~~~~~~ 129 (146)
.+..+||.+.|++.++
T Consensus 101 ~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 101 GQQVMGLYGAIIVEPP 116 (117)
T ss_dssp THHHTTEEEEEEEE-T
T ss_pred chhcCcCEEEEEEcCC
Confidence 9878999999987654
No 20
>PLN02604 oxidoreductase
Probab=99.07 E-value=4e-10 Score=100.51 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=57.6
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec----------------------CCCceEEEEEeCCCeeEEEEecCcc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH----------------------PHGWTELRFRADNPGAWTFHCHIES 114 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH----------------------~~~~~~irf~adnpG~W~lHCHi~~ 114 (146)
+++.|++ |++.+.|.... ..|+||+| ||+..+++|+++++|.|+||||...
T Consensus 58 ~~~~Gd~--v~v~v~N~l~~-----~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~ 130 (566)
T PLN02604 58 LAQQGDT--VIVELKNSLLT-----ENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGM 130 (566)
T ss_pred EEECCCE--EEEEEEeCCCC-----CCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHH
Confidence 5899988 99999998532 37999999 7788999999999999999999999
Q ss_pred ccccCceEEEeccc
Q 047006 115 HFYVGMGVVFAEGI 128 (146)
Q Consensus 115 H~~~GM~~~~~~~~ 128 (146)
|...||.+.|++.+
T Consensus 131 q~~~Gl~G~liV~~ 144 (566)
T PLN02604 131 QREAGLYGSIRVSL 144 (566)
T ss_pred HHhCCCeEEEEEEe
Confidence 99999999987643
No 21
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.76 E-value=2.6e-08 Score=88.43 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=57.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec----------------------CCCceEEEEEeCCCeeEEEEecCcc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH----------------------PHGWTELRFRADNPGAWTFHCHIES 114 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH----------------------~~~~~~irf~adnpG~W~lHCHi~~ 114 (146)
+++.|++ |+|.+.|.... ..+.||+| ||+..+++|+++++|.|.||||...
T Consensus 35 ~~~~Gd~--v~v~v~N~l~~-----~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~ 107 (541)
T TIGR03388 35 RAQAGDT--IVVELTNKLHT-----EGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGM 107 (541)
T ss_pred EEEcCCE--EEEEEEECCCC-----CCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchH
Confidence 5889999 99999997532 27899999 6788999999999999999999999
Q ss_pred ccccCceEEEeccc
Q 047006 115 HFYVGMGVVFAEGI 128 (146)
Q Consensus 115 H~~~GM~~~~~~~~ 128 (146)
|...||.+.|++.+
T Consensus 108 q~~~Gl~G~liV~~ 121 (541)
T TIGR03388 108 QRSAGLYGSLIVDV 121 (541)
T ss_pred HhhccceEEEEEec
Confidence 99999999997653
No 22
>PLN02191 L-ascorbate oxidase
Probab=98.51 E-value=3.7e-07 Score=81.80 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=56.6
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec----------------------CCCceEEEEEeCCCeeEEEEecCcc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH----------------------PHGWTELRFRADNPGAWTFHCHIES 114 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH----------------------~~~~~~irf~adnpG~W~lHCHi~~ 114 (146)
+++.|++ |++.+.|.-.. ..+.||.| ||+..+++|.++++|.+.||||...
T Consensus 57 ~~~~Gd~--v~v~v~N~l~~-----~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~ 129 (574)
T PLN02191 57 DAVAGDT--IVVHLTNKLTT-----EGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGM 129 (574)
T ss_pred EEEcCCE--EEEEEEECCCC-----CCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHH
Confidence 5789988 99999997432 26899999 7888999999999999999999999
Q ss_pred ccccCceEEEecc
Q 047006 115 HFYVGMGVVFAEG 127 (146)
Q Consensus 115 H~~~GM~~~~~~~ 127 (146)
+...||.+.|++.
T Consensus 130 q~~~Gl~G~liV~ 142 (574)
T PLN02191 130 QRSAGLYGSLIVD 142 (574)
T ss_pred HHhCCCEEEEEEc
Confidence 9999999998764
No 23
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.44 E-value=8.7e-07 Score=66.80 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=51.5
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceecC----------------------------C--CceEEEEEeCCCeeE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLHP----------------------------H--GWTELRFRADNPGAW 106 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH~----------------------------~--~~~~irf~adnpG~W 106 (146)
+++.|++ |++.+.|.+.. ..|.+-||. + ++..++|+++.||.+
T Consensus 55 ~v~~Gd~--V~v~v~N~~~~-----~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGty 127 (148)
T TIGR03095 55 VIPEGVT--VHFTVINTDTD-----SGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTY 127 (148)
T ss_pred EEcCCCE--EEEEEEeCCCC-----ccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEE
Confidence 5899999 99999998642 278887760 1 025788999999999
Q ss_pred EEEecCccccccCceEEEec
Q 047006 107 TFHCHIESHFYVGMGVVFAE 126 (146)
Q Consensus 107 ~lHCHi~~H~~~GM~~~~~~ 126 (146)
.||||+..|..+||.+.|++
T Consensus 128 wyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 128 WYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EEEcCChhHHHCCCEEEEEE
Confidence 99999999999999998865
No 24
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.35 E-value=1.4e-06 Score=78.46 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=57.2
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec--------------------CCCceEEEEEeCCCeeEEEEecCcccc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH--------------------PHGWTELRFRADNPGAWTFHCHIESHF 116 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH--------------------~~~~~~irf~adnpG~W~lHCHi~~H~ 116 (146)
+++.|+. |+|.+.|.-.. +..||+| ||+..+++|.+..+|.|.||||...+.
T Consensus 79 r~~~Gd~--v~v~v~N~l~~------~tsiHwHGl~~~~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~ 150 (587)
T TIGR01480 79 RWREGDT--VRLRVTNTLPE------DTSIHWHGILLPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQE 150 (587)
T ss_pred EEECCCE--EEEEEEcCCCC------CceEEcCCCcCCccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHh
Confidence 5789988 99999997654 7899999 688899999999999999999999999
Q ss_pred ccCceEEEeccc
Q 047006 117 YVGMGVVFAEGI 128 (146)
Q Consensus 117 ~~GM~~~~~~~~ 128 (146)
..||.+.|++.+
T Consensus 151 ~~GL~G~lIV~~ 162 (587)
T TIGR01480 151 QAGLYGPLIIDP 162 (587)
T ss_pred hccceEEEEECC
Confidence 999999987654
No 25
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.27 E-value=2.8e-06 Score=70.91 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=57.4
Q ss_pred ceEEEccc--------ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------------CCCc
Q 047006 49 ARFSLFGC--------SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------------PHGW 93 (146)
Q Consensus 49 ~~~~ing~--------~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------------~~~~ 93 (146)
..+.|||+ .++.|++ ++|+|.|.+.. ..+.+|++ ||++
T Consensus 189 ~~~~iNG~~~~~~~~~~v~~G~~--~RlRiiNa~~~-----~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R 261 (311)
T TIGR02376 189 THVVFNGAVGALTGDNALTAGVG--ERVLFVHSQPN-----RDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSA 261 (311)
T ss_pred CEEEECCccCCCCCCcccccCCc--EEEEEEcCCCC-----CCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCce
Confidence 44568997 4788888 99999998753 24556666 8889
Q ss_pred eEEEEEeCCCeeEEEEecCcccc-ccCceEEEec
Q 047006 94 TELRFRADNPGAWTFHCHIESHF-YVGMGVVFAE 126 (146)
Q Consensus 94 ~~irf~adnpG~W~lHCHi~~H~-~~GM~~~~~~ 126 (146)
+.|.+++++||.|.+|||...+. ..|+.+++.+
T Consensus 262 ~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~ 295 (311)
T TIGR02376 262 AAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKV 295 (311)
T ss_pred EEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEE
Confidence 99999999999999999988887 6688888854
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.24 E-value=3.7e-06 Score=74.75 Aligned_cols=63 Identities=17% Similarity=0.061 Sum_probs=53.4
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec----------------------CCCceEEEEEe-CCCeeEEEEecCc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH----------------------PHGWTELRFRA-DNPGAWTFHCHIE 113 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH----------------------~~~~~~irf~a-dnpG~W~lHCHi~ 113 (146)
+++.|++ |++.+.|.-.. ++.||+| ||+..+.+|++ +.+|.+.||||..
T Consensus 37 ~~~~GD~--v~v~v~N~l~~------~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~ 108 (539)
T TIGR03389 37 YAREGDT--VIVNVTNNVQY------NVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHIS 108 (539)
T ss_pred EEEcCCE--EEEEEEeCCCC------CeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCch
Confidence 5899988 99999998654 7899999 68889999998 5999999999985
Q ss_pred cccccCceEEEeccc
Q 047006 114 SHFYVGMGVVFAEGI 128 (146)
Q Consensus 114 ~H~~~GM~~~~~~~~ 128 (146)
+...||.+.|++.+
T Consensus 109 -~~~~Gl~G~lIV~~ 122 (539)
T TIGR03389 109 -WLRATVYGAIVILP 122 (539)
T ss_pred -hhhccceEEEEEcC
Confidence 45579999887653
No 27
>PLN02835 oxidoreductase
Probab=98.22 E-value=4.9e-06 Score=74.18 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=58.1
Q ss_pred Ecc------cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------CCCceEEEEEe-CCCe
Q 047006 53 LFG------CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------PHGWTELRFRA-DNPG 104 (146)
Q Consensus 53 ing------~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------~~~~~~irf~a-dnpG 104 (146)
||| .+++.|++ |+|.+.|.-.. +..||.| ||+..+++|.+ +.+|
T Consensus 53 ~NG~~PGP~I~~~~GD~--v~v~v~N~L~~------~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~G 124 (539)
T PLN02835 53 INGQFPGPRLDVVTNDN--IILNLINKLDQ------PFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIG 124 (539)
T ss_pred ECCcCCCCCEEEECCCE--EEEEEEeCCCC------CCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCE
Confidence 777 35789988 99999998644 7889999 78889999986 6899
Q ss_pred eEEEEecCccccccCceEEEecc
Q 047006 105 AWTFHCHIESHFYVGMGVVFAEG 127 (146)
Q Consensus 105 ~W~lHCHi~~H~~~GM~~~~~~~ 127 (146)
.+.||+|...+...||.+.+++.
T Consensus 125 T~WYHsH~~~q~~~Gl~G~lIV~ 147 (539)
T PLN02835 125 TFTYFPSTLFHKAAGGFGAINVY 147 (539)
T ss_pred eEEEEeCccchhcCcccceeEEe
Confidence 99999999999999999998763
No 28
>PLN02168 copper ion binding / pectinesterase
Probab=98.20 E-value=5.2e-06 Score=74.16 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=58.7
Q ss_pred Ecc------cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------CCCceEEEEEe-CCCe
Q 047006 53 LFG------CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------PHGWTELRFRA-DNPG 104 (146)
Q Consensus 53 ing------~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------~~~~~~irf~a-dnpG 104 (146)
||| .+++.|++ |+|.+.|.-.. .-.||.| ||+..+.+|++ +.+|
T Consensus 50 vNG~~PGP~I~~~~GD~--v~V~v~N~L~~------~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~G 121 (545)
T PLN02168 50 INDMFPGPLLNATANDV--INVNIFNNLTE------PFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIG 121 (545)
T ss_pred ECCcCCCCcEEEECCCE--EEEEEEeCCCC------CccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCc
Confidence 677 35889988 99999997644 6789999 78889999999 5899
Q ss_pred eEEEEecCccccccCceEEEeccc
Q 047006 105 AWTFHCHIESHFYVGMGVVFAEGI 128 (146)
Q Consensus 105 ~W~lHCHi~~H~~~GM~~~~~~~~ 128 (146)
.+.||+|...+...||.+.|++.+
T Consensus 122 T~WYHsH~~~Q~~~GL~G~lII~~ 145 (545)
T PLN02168 122 SYFYFPSLLLQKAAGGYGAIRIYN 145 (545)
T ss_pred eEEEecChhhhhhCcceeEEEEcC
Confidence 999999999999999999987654
No 29
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.15 E-value=7.7e-06 Score=73.78 Aligned_cols=69 Identities=14% Similarity=-0.005 Sum_probs=59.5
Q ss_pred Ecc------cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------CCCceEEEEEe-CCCe
Q 047006 53 LFG------CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------PHGWTELRFRA-DNPG 104 (146)
Q Consensus 53 ing------~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------~~~~~~irf~a-dnpG 104 (146)
||| .+++.|++ |++.+.|.-.. .-.||.| ||+..+++|++ |.+|
T Consensus 53 vNGq~PGPtI~~~~GD~--v~V~V~N~L~~------~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~G 124 (596)
T PLN00044 53 INGQFPGPALNVTTNWN--LVVNVRNALDE------PLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVG 124 (596)
T ss_pred EcCcCCCCcEEEECCCE--EEEEEEeCCCC------CccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCc
Confidence 777 35789988 99999998644 6789999 78889999999 6899
Q ss_pred eEEEEecCccccccCceEEEecccc
Q 047006 105 AWTFHCHIESHFYVGMGVVFAEGIE 129 (146)
Q Consensus 105 ~W~lHCHi~~H~~~GM~~~~~~~~~ 129 (146)
.+.||+|...+...||.+.|++.+.
T Consensus 125 T~WYHsH~~~Q~~~Gl~GalII~~~ 149 (596)
T PLN00044 125 SFFYAPSTALHRAAGGYGAITINNR 149 (596)
T ss_pred eeEeeccchhhhhCcCeeEEEEcCc
Confidence 9999999999999999999976543
No 30
>PLN02354 copper ion binding / oxidoreductase
Probab=98.12 E-value=8.9e-06 Score=72.76 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=58.0
Q ss_pred Ecc------cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------CCCceEEEEEe-CCCe
Q 047006 53 LFG------CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------PHGWTELRFRA-DNPG 104 (146)
Q Consensus 53 ing------~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------~~~~~~irf~a-dnpG 104 (146)
||| .+++.|++ |+|.+.|.-.. .=.||.| ||+..+.+|++ +.+|
T Consensus 51 iNGq~PGP~I~~~~GD~--v~V~v~N~l~~------~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~G 122 (552)
T PLN02354 51 INGQFPGPNINSTSNNN--IVINVFNNLDE------PFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIG 122 (552)
T ss_pred ECCCCcCCcEEEeCCCE--EEEEEEECCCC------CcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCc
Confidence 777 35789988 99999998543 4568888 78889999998 5899
Q ss_pred eEEEEecCccccccCceEEEecccc
Q 047006 105 AWTFHCHIESHFYVGMGVVFAEGIE 129 (146)
Q Consensus 105 ~W~lHCHi~~H~~~GM~~~~~~~~~ 129 (146)
.+.||+|...+...||.+.|++.+.
T Consensus 123 T~WYHsH~~~Q~~~Gl~G~lII~~~ 147 (552)
T PLN02354 123 SYFYYPSTGMHRAAGGFGGLRVNSR 147 (552)
T ss_pred ceEEecCccceecCCccceEEEcCC
Confidence 9999999999999999998876543
No 31
>PLN02792 oxidoreductase
Probab=98.08 E-value=1.1e-05 Score=72.08 Aligned_cols=62 Identities=10% Similarity=-0.002 Sum_probs=54.1
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------CCCceEEEEEe-CCCeeEEEEecCcc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------PHGWTELRFRA-DNPGAWTFHCHIES 114 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------~~~~~~irf~a-dnpG~W~lHCHi~~ 114 (146)
+++.|++ |++.+.|.-.. ...||.| ||+..+.+|.+ |.+|.+.||+|...
T Consensus 50 ~~~~GD~--v~V~v~N~L~~------~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~ 121 (536)
T PLN02792 50 RSLTNDN--LVINVHNDLDE------PFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAV 121 (536)
T ss_pred EEECCCE--EEEEEEeCCCC------CcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcch
Confidence 5799988 99999998644 7789999 78889999998 58999999999999
Q ss_pred ccccCceEEEec
Q 047006 115 HFYVGMGVVFAE 126 (146)
Q Consensus 115 H~~~GM~~~~~~ 126 (146)
+...||.+.++.
T Consensus 122 q~~~Gl~G~liI 133 (536)
T PLN02792 122 QKAAGGYGSLRI 133 (536)
T ss_pred hhhcccccceEE
Confidence 999999887743
No 32
>PLN02991 oxidoreductase
Probab=97.91 E-value=3.5e-05 Score=68.88 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=57.8
Q ss_pred Ecc------cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------CCCceEEEEEe-CCCe
Q 047006 53 LFG------CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------PHGWTELRFRA-DNPG 104 (146)
Q Consensus 53 ing------~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------~~~~~~irf~a-dnpG 104 (146)
||| .+++.|++ |++.+.|.-.. .-.||.| ||+..+.+|.+ +.+|
T Consensus 52 vNG~~PGP~I~~~~GD~--v~V~V~N~L~~------~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~G 123 (543)
T PLN02991 52 INGKFPGPDIISVTNDN--LIINVFNHLDE------PFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIG 123 (543)
T ss_pred EcCCCCCCcEEEECCCE--EEEEecCCCCC------CccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCc
Confidence 788 45789988 99999997543 6688999 78889999999 5899
Q ss_pred eEEEEecCccccccCceEEEeccc
Q 047006 105 AWTFHCHIESHFYVGMGVVFAEGI 128 (146)
Q Consensus 105 ~W~lHCHi~~H~~~GM~~~~~~~~ 128 (146)
.+.||+|...+...|+.+.+++.+
T Consensus 124 T~WYHsH~~~q~~~Gl~G~lIV~~ 147 (543)
T PLN02991 124 SFYYFPSLGFHKAAGGFGAIRISS 147 (543)
T ss_pred ceEEecCcchhhhCCCeeeEEEeC
Confidence 999999999888999998887653
No 33
>PRK10965 multicopper oxidase; Provisional
Probab=97.89 E-value=3.6e-05 Score=68.51 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=55.8
Q ss_pred cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----------------CCCceEEEEEeCC-CeeEEEEecC----c
Q 047006 56 CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-----------------PHGWTELRFRADN-PGAWTFHCHI----E 113 (146)
Q Consensus 56 ~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-----------------~~~~~~irf~adn-pG~W~lHCHi----~ 113 (146)
.+++.|+. |++.+.|.-.. +..+|+| ||+..+++|.++. +|.+.||+|. .
T Consensus 79 Ir~~~Gd~--v~v~~~N~L~~------~ttiHwHGl~~~~~~DG~pq~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~ 150 (523)
T PRK10965 79 VRLQRGKA--VTVDITNQLPE------ETTLHWHGLEVPGEVDGGPQGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTG 150 (523)
T ss_pred EEEECCCE--EEEEEEECCCC------CccEEcccccCCCccCCCCCCCCCCCCEEEEEeccCCCCceEEEecCCCCCcH
Confidence 35799988 99999997544 7889999 7888999999986 6999999996 6
Q ss_pred cccccCceEEEecccc
Q 047006 114 SHFYVGMGVVFAEGIE 129 (146)
Q Consensus 114 ~H~~~GM~~~~~~~~~ 129 (146)
.+...||.+.|++.++
T Consensus 151 ~Qv~~GL~G~lIV~d~ 166 (523)
T PRK10965 151 RQVAMGLAGLVLIEDD 166 (523)
T ss_pred HHHhCcCeEEEEEcCc
Confidence 7888999999876543
No 34
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.88 E-value=6.6e-05 Score=52.49 Aligned_cols=56 Identities=29% Similarity=0.374 Sum_probs=42.1
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----------------------CCCceEEEEEeCCCeeEEEEecCc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-----------------------PHGWTELRFRADNPGAWTFHCHIE 113 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-----------------------~~~~~~irf~adnpG~W~lHCHi~ 113 (146)
.++.|++ |+|+ |.+.. .|.+.+. ||+.+.+.|. .||.|.|+|-
T Consensus 20 ~v~~G~~--V~~~--N~~~~------~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~--~~G~y~y~C~-- 85 (99)
T TIGR02656 20 SIAAGDT--VEWV--NNKGG------PHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFS--TPGTYTFYCE-- 85 (99)
T ss_pred EECCCCE--EEEE--ECCCC------CceEEECCCCCccchhhhcccccccccccCCCCEEEEEeC--CCEEEEEEcC--
Confidence 6799998 9876 65544 6766555 4555555555 5999999997
Q ss_pred cccccCceEEEec
Q 047006 114 SHFYVGMGVVFAE 126 (146)
Q Consensus 114 ~H~~~GM~~~~~~ 126 (146)
.|..+||.+.+.+
T Consensus 86 ~H~~aGM~G~I~V 98 (99)
T TIGR02656 86 PHRGAGMVGKITV 98 (99)
T ss_pred CccccCCEEEEEE
Confidence 8999999998864
No 35
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.87 E-value=5.5e-05 Score=56.44 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=45.6
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC---ccccccCc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI---ESHFYVGM 120 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi---~~H~~~GM 120 (146)
.++.|+. |+|++.|.+.. +|.+-++ +++..+++|.++.||.+-|||.. ..|+...+
T Consensus 64 ~VkaGD~--Vtl~vtN~d~~------~H~f~i~~~gis~~I~pGet~TitF~adKpG~Y~y~C~~HP~~~H~~~~~ 131 (135)
T TIGR03096 64 VVKKGTP--VKVTVENKSPI------SEGFSIDAYGISEVIKAGETKTISFKADKAGAFTIWCQLHPKNIHLPGSL 131 (135)
T ss_pred EECCCCE--EEEEEEeCCCC------ccceEECCCCcceEECCCCeEEEEEECCCCEEEEEeCCCCChhhcCCCcc
Confidence 5799999 99999998765 7876666 88889999999999999999964 34554443
No 36
>PRK10883 FtsI repressor; Provisional
Probab=97.74 E-value=0.00011 Score=64.46 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=55.0
Q ss_pred Ecc------cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----------------CCCceEEEEEeCC-CeeEEE
Q 047006 53 LFG------CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-----------------PHGWTELRFRADN-PGAWTF 108 (146)
Q Consensus 53 ing------~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-----------------~~~~~~irf~adn-pG~W~l 108 (146)
+|| .+++.|++ |++.+.|.-.. +..+|+| ||+..+++|..++ +|.+.|
T Consensus 70 ~ng~~pGPtir~~~Gd~--v~v~v~N~L~~------~ttiHwHGl~~~~~~~~g~~~~I~PG~~~~y~f~~~~~aGT~WY 141 (471)
T PRK10883 70 INGRYLGPTIRVWKGDD--VKLIYSNRLTE------PVSMTVSGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATCWY 141 (471)
T ss_pred ECCcccCCeEEEECCCE--EEEEEEeCCCC------CCceeECCccCCCCCCCCccccCCCCCeEEEEEecCCCceeeEE
Confidence 677 56899999 99999997644 7789999 6788899998775 899999
Q ss_pred EecCcc----ccccCceEEEecc
Q 047006 109 HCHIES----HFYVGMGVVFAEG 127 (146)
Q Consensus 109 HCHi~~----H~~~GM~~~~~~~ 127 (146)
|+|... +...||.+.+++.
T Consensus 142 H~H~~~~t~~qv~~GL~G~lII~ 164 (471)
T PRK10883 142 HANTPNRMAQHVYNGLAGMWLVE 164 (471)
T ss_pred ccCCCCchhhhHhcCCeEEEEEe
Confidence 999654 5678999888654
No 37
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.70 E-value=0.00015 Score=65.21 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=58.0
Q ss_pred Eccc------ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------------------CCCceEEEEEeC-CCe
Q 047006 53 LFGC------SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------------------PHGWTELRFRAD-NPG 104 (146)
Q Consensus 53 ing~------~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------------------~~~~~~irf~ad-npG 104 (146)
|||+ .++.|++ |.|.+.|.... +=.||.| ||+.++.+|.++ +.|
T Consensus 52 iNG~fPGP~I~~~~gD~--ivV~v~N~~~~------~~sihWhGv~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~G 123 (563)
T KOG1263|consen 52 INGQFPGPTINAEEGDT--IVVNVVNRLDE------PFSIHWHGVRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIG 123 (563)
T ss_pred ecCCCCCCeEEEEeCCE--EEEEEEeCCCC------ceEEEeccccccCCccccCCccccCCcCCCCeEEEEEEeCCcce
Confidence 7773 4789988 99999998533 5567777 788899999997 899
Q ss_pred eEEEEecCccccccCceEEEecccc
Q 047006 105 AWTFHCHIESHFYVGMGVVFAEGIE 129 (146)
Q Consensus 105 ~W~lHCHi~~H~~~GM~~~~~~~~~ 129 (146)
.++||-|..+|.+.|+.+.|+..+.
T Consensus 124 T~~yh~h~~~~Ra~G~~G~liI~~~ 148 (563)
T KOG1263|consen 124 TLWYHSHVSWQRATGVFGALIINPR 148 (563)
T ss_pred eEEEeeccccccccCceeEEEEcCC
Confidence 9999999999999999998876544
No 38
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=97.69 E-value=0.00014 Score=64.93 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=51.6
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec----------------------CCCceEEEEEe--CCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH----------------------PHGWTELRFRA--DNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH----------------------~~~~~~irf~a--dnpG~W~lHCHi 112 (146)
+++.|++ |+|.+.|.-.. ....||+| ||+..+.+|.+ +.+|.+.||||.
T Consensus 42 ~~~~GD~--v~V~v~N~L~~-----~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~ 114 (538)
T TIGR03390 42 RLQEGQT--TWIRVYNDIPD-----NNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHV 114 (538)
T ss_pred EEeCCCE--EEEEEEECCCC-----CCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCC
Confidence 5789988 99999997431 26789999 78889999997 479999999998
Q ss_pred ccccccCceEEEeccc
Q 047006 113 ESHFYVGMGVVFAEGI 128 (146)
Q Consensus 113 ~~H~~~GM~~~~~~~~ 128 (146)
.... .||.+.|++.+
T Consensus 115 ~~Q~-~~l~G~lIV~~ 129 (538)
T TIGR03390 115 GFQA-VTAFGPLIVED 129 (538)
T ss_pred chhh-hcceeEEEEcc
Confidence 7665 46998887643
No 39
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.39 E-value=0.00043 Score=48.43 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=37.5
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecCcc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHIES 114 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi~~ 114 (146)
.++.|+. |+|++.|.+.. .|-+.+- +|+..+++|.++.||.+-|+|-+..
T Consensus 38 ~v~~G~~--v~l~~~N~~~~------~h~~~i~~~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 38 TVKAGQP--VTLTFTNNDSR------PHEFVIPDLGISKVLPPGETATVTFTPLKPGEYEFYCTMHP 96 (104)
T ss_dssp EEETTCE--EEEEEEE-SSS-------EEEEEGGGTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-
T ss_pred EEcCCCe--EEEEEEECCCC------cEEEEECCCceEEEECCCCEEEEEEcCCCCEEEEEEcCCCC
Confidence 6899999 99999999865 6777666 8888999999999999999998554
No 40
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.21 E-value=0.0017 Score=45.19 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=41.7
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----------------------CCCceEEEEEeCCCeeEEEEecCc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-----------------------PHGWTELRFRADNPGAWTFHCHIE 113 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-----------------------~~~~~~irf~adnpG~W~lHCHi~ 113 (146)
.++.|++ |.|+.. +.. .|.+.+= +|....++|. .||.+.|+|- -
T Consensus 20 ~V~~G~t--V~~~n~--~~~------~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~~G~y~y~C~-P 86 (99)
T PF00127_consen 20 TVKAGDT--VTFVNN--DSM------PHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--KPGTYEYYCT-P 86 (99)
T ss_dssp EEETTEE--EEEEEE--SSS------SBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--SSEEEEEEET-T
T ss_pred EECCCCE--EEEEEC--CCC------CceEEEecccccccccccccCccccceecCCCCEEEEEeC--CCeEEEEEcC-C
Confidence 6789988 887654 322 6766663 3455566665 9999999999 4
Q ss_pred cccccCceEEEec
Q 047006 114 SHFYVGMGVVFAE 126 (146)
Q Consensus 114 ~H~~~GM~~~~~~ 126 (146)
|..+||.+.+.+
T Consensus 87 -H~~~GM~G~i~V 98 (99)
T PF00127_consen 87 -HYEAGMVGTIIV 98 (99)
T ss_dssp -TGGTTSEEEEEE
T ss_pred -CcccCCEEEEEE
Confidence 999999998865
No 41
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.08 E-value=0.002 Score=58.55 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=52.1
Q ss_pred cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecCcccc-ccCceEEEe
Q 047006 56 CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHIESHF-YVGMGVVFA 125 (146)
Q Consensus 56 ~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi~~H~-~~GM~~~~~ 125 (146)
+.++.|+. |.|++.|.... ....|.|-+- |+....+.|+|+.||.|.++|...-|. ..+|.+.+.
T Consensus 557 i~Vk~GDe--Vt~~lTN~d~~---~DViHGF~Ip~~nI~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H~~M~G~~i 631 (635)
T PRK02888 557 FTVKQGDE--VTVIVTNLDKV---EDLTHGFAIPNYGVNMEVAPQATASVTFTADKPGVYWYYCTWFCHALHMEMRGRML 631 (635)
T ss_pred EEecCCCE--EEEEEEeCCcc---cccccceeecccCccEEEcCCceEEEEEEcCCCEEEEEECCcccccCcccceEEEE
Confidence 46899999 99999996432 1237888885 899999999999999999999863221 247888776
Q ss_pred ccc
Q 047006 126 EGI 128 (146)
Q Consensus 126 ~~~ 128 (146)
+.+
T Consensus 632 Vep 634 (635)
T PRK02888 632 VEP 634 (635)
T ss_pred EEe
Confidence 643
No 42
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0032 Score=48.03 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=51.3
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCccee-----------------------------cCCCceEEEEEeCCCeeEE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHL-----------------------------HPHGWTELRFRADNPGAWT 107 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~Hl-----------------------------H~~~~~~irf~adnpG~W~ 107 (146)
.++.|++ |++++.|.+.. .|=|-+ -||....+.+++.+||.+-
T Consensus 66 ~v~aG~t--v~~v~~n~~el------~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 66 EVKAGET--VRFVLKNEGEL------KHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred cccCCcE--EeeeecCcccc------eEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 5678888 88888887654 232222 2899999999999999999
Q ss_pred EEecCccccccCceEEEecc
Q 047006 108 FHCHIESHFYVGMGVVFAEG 127 (146)
Q Consensus 108 lHCHi~~H~~~GM~~~~~~~ 127 (146)
|-|-+.+|..+||-+.|.+.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999988654
No 43
>PRK02710 plastocyanin; Provisional
Probab=96.96 E-value=0.0035 Score=45.25 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=40.9
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-------------CCCceEEEEEeCCCeeEEEEecCccccccCceEE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVV 123 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~ 123 (146)
.++.|++ |+|+ |.+.. +|.+.+. +++.+.+.|. .||.+-|+|- .|..+||.+.
T Consensus 50 ~v~~Gd~--V~~~--N~~~~------~H~v~~~~~~~~~~~~~~~~pg~t~~~tF~--~~G~y~y~C~--~H~~~gM~G~ 115 (119)
T PRK02710 50 TIKAGDT--VKWV--NNKLA------PHNAVFDGAKELSHKDLAFAPGESWEETFS--EAGTYTYYCE--PHRGAGMVGK 115 (119)
T ss_pred EEcCCCE--EEEE--ECCCC------CceEEecCCccccccccccCCCCEEEEEec--CCEEEEEEcC--CCccCCcEEE
Confidence 6799988 9875 55433 5655443 4555555555 5999999996 7999999998
Q ss_pred Eec
Q 047006 124 FAE 126 (146)
Q Consensus 124 ~~~ 126 (146)
+.+
T Consensus 116 I~V 118 (119)
T PRK02710 116 ITV 118 (119)
T ss_pred EEE
Confidence 865
No 44
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=96.96 E-value=0.0045 Score=46.42 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=45.9
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-------------------------CCCceEEEEEeCC-CeeEEEEe
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-------------------------PHGWTELRFRADN-PGAWTFHC 110 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-------------------------~~~~~~irf~adn-pG~W~lHC 110 (146)
.++.|++ ++|+|+|.+.. ..+.+++. +|+++++.++++. +|.|.+++
T Consensus 63 ~v~~g~~--~rlRliNa~~~-----~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~ 135 (159)
T PF00394_consen 63 KVKPGER--YRLRLINAGAS-----TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRA 135 (159)
T ss_dssp EEETTTE--EEEEEEEESSS------BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEE
T ss_pred EEcCCcE--EEEEEEeccCC-----eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEE
Confidence 5789988 99999998754 24555554 8999999999998 99999999
Q ss_pred ----cCccccccCceEEE
Q 047006 111 ----HIESHFYVGMGVVF 124 (146)
Q Consensus 111 ----Hi~~H~~~GM~~~~ 124 (146)
+.......|+...+
T Consensus 136 ~~~~~~~~~~~~~~~~ai 153 (159)
T PF00394_consen 136 SYQHDSINDPQNGNALAI 153 (159)
T ss_dssp EESSSSSHSHGGGTTEEE
T ss_pred ecccCCCccCCCcEEEEE
Confidence 43445555555443
No 45
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=96.46 E-value=0.021 Score=41.40 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=41.6
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecCc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHIE 113 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi~ 113 (146)
.++.|+. |++.+.+.+. .|.|.+- ||....+.|+++.||.+.+.|--.
T Consensus 49 ~lp~g~~--v~~~ltS~DV-------iHsf~ip~~~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e~ 105 (120)
T PF00116_consen 49 VLPAGQP--VRFHLTSEDV-------IHSFWIPELGIKMDAIPGRTNSVTFTPDKPGTYYGQCAEY 105 (120)
T ss_dssp EEETTSE--EEEEEEESSS--------EEEEETTCTEEEEEBTTCEEEEEEEESSSEEEEEEE-SS
T ss_pred cccccce--EeEEEEcCCc-------cccccccccCcccccccccceeeeeeeccCCcEEEcCccc
Confidence 7899999 9999999775 5999888 888899999999999999999753
No 46
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.13 E-value=0.025 Score=41.07 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=42.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----CCCceEEEEEeCCCeeEEEEecCccccccCceEEEeccc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-----PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAEGI 128 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-----~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~~~~ 128 (146)
.++.|++ |+|+..+.+-.. ......++-+ ++.-..++++.+.||.+-|.|- .|..+||.+.+.+..
T Consensus 18 ~V~~GdT--V~f~n~d~~Hnv--~~~~~~~p~g~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 18 RAAPGDT--VTFVPTDKGHNV--ETIKGMIPEGAEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred EECCCCE--EEEEECCCCeeE--EEccCCCcCCcccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 6799999 999876543110 0000001111 2222345666689999999997 899999999997753
No 47
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.13 E-value=0.037 Score=43.72 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=49.9
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----------------------------------CCCceEEEEEeC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-----------------------------------PHGWTELRFRAD 101 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-----------------------------------~~~~~~irf~ad 101 (146)
.++.|-+ |.++|.|.+.+ +|.+=+= +|.....-|..-
T Consensus 89 ~VPAGw~--V~i~f~N~~~l------~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l 160 (196)
T PF06525_consen 89 YVPAGWN--VQITFTNQESL------PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDL 160 (196)
T ss_pred EEcCCCE--EEEEEEcCCCC------CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccC
Confidence 4799989 99999998876 7766554 233333345566
Q ss_pred CCeeEEEEecCccccccCceEEEeccc
Q 047006 102 NPGAWTFHCHIESHFYVGMGVVFAEGI 128 (146)
Q Consensus 102 npG~W~lHCHi~~H~~~GM~~~~~~~~ 128 (146)
.||.+.|=|-+..|..+||.+.|.+..
T Consensus 161 ~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 161 PAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred CCceEEEEccCCChhhcCCEEEEEEec
Confidence 799999999999999999999997653
No 48
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.04 E-value=0.047 Score=36.70 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=40.4
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceecCCC-------------ceEEEEEeCCCeeEEEEecCccccccCceEE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLHPHG-------------WTELRFRADNPGAWTFHCHIESHFYVGMGVV 123 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH~~~-------------~~~irf~adnpG~W~lHCHi~~H~~~GM~~~ 123 (146)
.+..|++ |.| .|.+.. .|.+++..+. -.+++++.+.||.+.|+|-+ |- .|.+.
T Consensus 14 ~v~~Gdt--Vt~--~N~d~~------~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~~--Hp--~M~G~ 79 (83)
T TIGR02657 14 HVKVGDT--VTW--INREAM------PHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGK 79 (83)
T ss_pred EECCCCE--EEE--EECCCC------CccEEecCCCCccccccccccCCCCEEEEECCCCEEEEEEcCC--CC--CCeEE
Confidence 6789988 886 476544 7998887221 24678888999999999975 33 47776
Q ss_pred Eec
Q 047006 124 FAE 126 (146)
Q Consensus 124 ~~~ 126 (146)
+.+
T Consensus 80 v~V 82 (83)
T TIGR02657 80 VVV 82 (83)
T ss_pred EEE
Confidence 643
No 49
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.52 E-value=0.1 Score=40.93 Aligned_cols=64 Identities=22% Similarity=0.161 Sum_probs=51.4
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-----------------------------------CCCceEEEEEeC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-----------------------------------PHGWTELRFRAD 101 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-----------------------------------~~~~~~irf~ad 101 (146)
.++.|-+ |.+.|.|...+ +|.+=+= +|......|.+-
T Consensus 88 yiPaGw~--V~V~f~N~e~~------pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~ 159 (195)
T TIGR03094 88 YLPAGWN--VYVTFTNYESL------PHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDT 159 (195)
T ss_pred EEeCCCE--EEEEEEcCCCC------CccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccC
Confidence 5799999 99999998866 7766554 233455666667
Q ss_pred CCeeEEEEecCccccccCceEEEeccc
Q 047006 102 NPGAWTFHCHIESHFYVGMGVVFAEGI 128 (146)
Q Consensus 102 npG~W~lHCHi~~H~~~GM~~~~~~~~ 128 (146)
.||.+.|-|-+..|..+||.+.+++..
T Consensus 160 ~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 160 SAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred CCeeEEEEcccCChhhcCcEEEEEEec
Confidence 899999999999999999998887653
No 50
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=95.16 E-value=0.13 Score=38.13 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=41.5
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec------------CCCceEEEEEeCCCeeEEEEecCccccccCceEEE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVF 124 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~ 124 (146)
+++.|++ |+|+ |.+.. .|..+.= .+.--..+...+.||.+.|.|- .|..+||-+.+
T Consensus 57 ~v~pGDT--Vtw~--~~d~~------~Hnv~~~~~~~~~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~I 124 (128)
T COG3794 57 TVKPGDT--VTWV--NTDSV------GHNVTAVGGMDPEGSGTLKAGINESFTHTFETPGEYTYYCT--PHPGMGMKGKI 124 (128)
T ss_pred EECCCCE--EEEE--ECCCC------CceEEEeCCCCcccccccccCCCcceEEEecccceEEEEec--cCCCCCcEEEE
Confidence 5789988 8876 55543 5666655 1111344555566999999994 78999999988
Q ss_pred ecc
Q 047006 125 AEG 127 (146)
Q Consensus 125 ~~~ 127 (146)
++.
T Consensus 125 vV~ 127 (128)
T COG3794 125 VVG 127 (128)
T ss_pred EeC
Confidence 764
No 51
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.17 E-value=0.18 Score=43.80 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=51.6
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec--------------------CCCceEEEEEeCCCeeEEEEecCcccc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH--------------------PHGWTELRFRADNPGAWTFHCHIESHF 116 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH--------------------~~~~~~irf~adnpG~W~lHCHi~~H~ 116 (146)
+++.|++ |++.+.|.-.. .=.+|+| ++...+..|..+.||...||-|.....
T Consensus 67 ~~~~Gd~--v~l~~~N~l~~------~t~vh~HG~~~p~~~dG~~~~~~~~~~~~~~~~y~f~~~~~gT~wyh~H~~~Q~ 138 (451)
T COG2132 67 RVKKGDT--VTLDLTNRLLV------DTSVHWHGLPVPGEMDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQV 138 (451)
T ss_pred EEecCCE--EEEEEEeCCCC------CceEEEcCcccCccccCCCcccccCCCCCCcEEEeecCCCCcceEeccCCCchh
Confidence 6789988 99999998432 1468889 566788999999999777888877788
Q ss_pred ccCceEEEecccc
Q 047006 117 YVGMGVVFAEGIE 129 (146)
Q Consensus 117 ~~GM~~~~~~~~~ 129 (146)
..||.+.++..++
T Consensus 139 ~~Gl~G~~II~~~ 151 (451)
T COG2132 139 YDGLAGALIIEDE 151 (451)
T ss_pred hcccceeEEEeCC
Confidence 8999998876444
No 52
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.78 E-value=0.37 Score=34.85 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=39.4
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec-------------CCCceEEEEEeCCCeeEEEEecCccccccCceEE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH-------------PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVV 123 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH-------------~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~ 123 (146)
.++.|++ |.|+-.... . .|....= +++ .+++..+.||.+-|+|- .|..+||.+.
T Consensus 45 tV~~GdT--Vtw~~~~d~-~------~HnV~s~~~~~f~s~~~~~~~G~--t~s~Tf~~~G~Y~Y~C~--pH~~~gM~G~ 111 (115)
T TIGR03102 45 RVDPGTT--VVWEWTGEG-G------GHNVVSDGDGDLDESERVSEEGT--TYEHTFEEPGIYLYVCV--PHEALGMKGA 111 (115)
T ss_pred EECCCCE--EEEEECCCC-C------CEEEEECCCCCccccccccCCCC--EEEEEecCCcEEEEEcc--CCCCCCCEEE
Confidence 6799999 987643221 1 3444322 222 45666789999999996 7899999998
Q ss_pred Eec
Q 047006 124 FAE 126 (146)
Q Consensus 124 ~~~ 126 (146)
+.+
T Consensus 112 I~V 114 (115)
T TIGR03102 112 VVV 114 (115)
T ss_pred EEE
Confidence 865
No 53
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=92.81 E-value=0.41 Score=37.40 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=46.4
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC---ccccccCceEEE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI---ESHFYVGMGVVF 124 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi---~~H~~~GM~~~~ 124 (146)
.++.|+. |++.+.+.+. .|.|.+- ||....+.|.++.||.+...|-- ..| +.|.+.+
T Consensus 120 ~vp~g~~--v~~~~ts~DV-------~Hsf~ip~~~~k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h--~~M~~~v 188 (201)
T TIGR02866 120 VVPAGTP--VRLQVTSKDV-------IHSFWVPELGGKIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH--SLMLFKV 188 (201)
T ss_pred EEEcCCE--EEEEEEeCch-------hhcccccccCceEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc--cCCeEEE
Confidence 5799988 9999988764 5888776 88889999999999999999975 334 4566555
Q ss_pred e
Q 047006 125 A 125 (146)
Q Consensus 125 ~ 125 (146)
.
T Consensus 189 ~ 189 (201)
T TIGR02866 189 V 189 (201)
T ss_pred E
Confidence 3
No 54
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=90.42 E-value=1.6 Score=34.88 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=41.8
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecCc
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHIE 113 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi~ 113 (146)
.++.|.. |++.+...+. .|.+.+- ||....+.|.++.||.+...|.-.
T Consensus 143 ~lP~~~~--v~~~~ts~DV-------iHsf~ip~~~~k~d~~Pg~~~~~~~~~~~~g~y~~~C~e~ 199 (228)
T MTH00140 143 VLPYSVD--TRVLVTSADV-------IHSWTVPSLGVKVDAIPGRLNQLSFEPKRPGVFYGQCSEI 199 (228)
T ss_pred EEeeCcE--EEEEEEcCcc-------ccceeccccCceeECCCCcceeEEEEeCCCEEEEEECccc
Confidence 6899999 9999998774 5998887 888889999999999999999743
No 55
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=85.33 E-value=2.7 Score=34.31 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=47.1
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecCcc-ccccCceEEEe
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHIES-HFYVGMGVVFA 125 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi~~-H~~~GM~~~~~ 125 (146)
.++.|+. |++.+.-.+. .|.|.+. ||-..+..+.++.||.+...|.-.- .-...|.+.+.
T Consensus 140 ~lPv~~~--V~f~ltS~DV-------iHsF~IP~l~~k~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH~~M~~~v~ 209 (247)
T COG1622 140 VLPVGRP--VRFKLTSADV-------IHSFWIPQLGGKIDAIPGMTTELWLTANKPGTYRGICAEYCGPGHSFMRFKVI 209 (247)
T ss_pred EEeCCCe--EEEEEEechh-------ceeEEecCCCceeeecCCceEEEEEecCCCeEEEEEcHhhcCCCcccceEEEE
Confidence 5789988 9999987664 5999998 8888899999999999999998542 22344655553
No 56
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=83.88 E-value=2.6 Score=33.80 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=40.3
Q ss_pred cccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEec
Q 047006 56 CSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCH 111 (146)
Q Consensus 56 ~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCH 111 (146)
..++.|+. |++.+.-.+. .|.|.+- ||....+.|.++.||.+...|-
T Consensus 141 l~lP~g~p--V~~~ltS~DV-------iHSF~VP~l~~K~DaiPG~~n~~~~~~~~~G~y~g~Ca 196 (226)
T TIGR01433 141 IAFPVNTP--INFKITSNSV-------MNSFFIPQLGSQIYAMAGMQTKLHLIANEPGVYDGISA 196 (226)
T ss_pred EEEECCCE--EEEEEEECch-------hhhhhhhhcCCeeecCCCceEEEEEEeCCCEEEEEEch
Confidence 35788988 9999887764 5888877 8888899999999999999995
No 57
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=83.18 E-value=7.5 Score=31.15 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=41.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.+|.|.. |++.+...+. .|.+.+. ||....+.|.++.||.+...|--
T Consensus 143 vlP~~~~--v~~~~tS~DV-------iHsf~vP~~~~k~daiPG~~~~~~~~~~~~G~~~g~Cse 198 (228)
T MTH00008 143 VLPMQTE--IRVLVTAADV-------IHSWTVPSLGVKVDAVPGRLNQIGFTITRPGVFYGQCSE 198 (228)
T ss_pred EEecCCE--EEEEEEeCCc-------cccccccccCcceecCCCceEEEEEEeCCCEEEEEEChh
Confidence 5799999 9999998774 5998888 88888999999999999999963
No 58
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=83.17 E-value=3 Score=33.00 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=40.2
Q ss_pred ccccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEec
Q 047006 55 GCSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCH 111 (146)
Q Consensus 55 g~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCH 111 (146)
-..++.|.. |++.+.-.+. .|.|.+- ||....+.|.|+.||.+-..|=
T Consensus 131 ~l~iP~g~~--v~~~ltS~DV-------iHsf~vP~l~~k~daiPG~~~~~~~~~~~~G~y~g~Ca 187 (217)
T TIGR01432 131 YLNIPKDRP--VLFKLQSADT-------MTSFWIPQLGGQKYAMTGMTMNWYLQADQVGTYRGRNA 187 (217)
T ss_pred cEEEECCCE--EEEEEECCch-------hhhhhchhhCceeecCCCceEEEEEEeCCCEEEEEEeh
Confidence 345788888 9999887664 5888777 8888899999999999999995
No 59
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=82.87 E-value=8.7 Score=30.80 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=40.4
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.+|.|.. |++.+.-.+. .|.+.+- ||....+.|.++.||.+...|--
T Consensus 143 vlP~~~~--v~~~~tS~DV-------iHsf~iP~lg~k~daiPG~~~~~~~~~~~~G~~~g~Cse 198 (229)
T MTH00038 143 VLPYQTP--IRVLVSSADV-------LHSWAVPSLGVKMDAVPGRLNQTTFFISRTGLFYGQCSE 198 (229)
T ss_pred EEecCeE--EEEEEEECCc-------cccccccccCceeecCCCceEEEEEEcCCCEEEEEEccc
Confidence 6899988 9999887664 5888888 88888899999999999999964
No 60
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=82.07 E-value=6.8 Score=31.65 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=40.8
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.+|.|.. |++.+.-.+. .|.+.+- ||....+.|.++.||.+...|.-
T Consensus 154 vlP~~~~--v~~~~tS~DV-------iHsf~iP~lgvK~DaiPG~~n~~~~~~~~~G~y~g~C~e 209 (240)
T MTH00023 154 VVPINTH--VRILVTGADV-------LHSFAVPSLGLKIDAVPGRLNQTGFFIKRPGVFYGQCSE 209 (240)
T ss_pred EEecCCE--EEEEEEcCCc-------ccceeecccCceeecCCCcceeEEEEcCCCEEEEEEchh
Confidence 6899988 9999887664 5999988 88888899999999999999974
No 61
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=81.20 E-value=8.2 Score=30.80 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=40.7
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.++.|+. |++.+.-.+. .|.+.+- ||....+.|.++.||.+..-|.-
T Consensus 143 ~lP~~~~--v~~~~tS~DV-------iHsf~vP~lg~k~daiPG~~n~~~~~~~~~G~~~g~CsE 198 (225)
T MTH00168 143 VLPMDSK--IRVLVTSADV-------LHSWTLPSLGLKMDAVPGRLNQLAFLSSRPGSFYGQCSE 198 (225)
T ss_pred EEecCCE--EEEEEEeCCh-------hhccccccccccccCCCCeEEEEEEEcCCCEEEEEEccc
Confidence 6899999 9999987764 5888887 88888999999999999999974
No 62
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=80.20 E-value=4.9 Score=31.55 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=40.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.++.|+. |++.+.-.+. .|.|.+. ||....+.|.++.||.+...|.-
T Consensus 119 ~lp~g~~--v~~~ltS~DV-------iHsf~vp~l~~k~d~~PG~~~~~~~~~~~~G~y~g~C~e 174 (194)
T MTH00047 119 RLVYGVP--YHLLVTSSDV-------IHSFSVPDLNLKMDAIPGRINHLFFCPDRHGVFVGYCSE 174 (194)
T ss_pred EEeCCCE--EEeeeecCcc-------ccceeccccCceeecCCCceEEEEEEcCCCEEEEEEeeh
Confidence 5788888 8888876654 5999887 88889999999999999999974
No 63
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=79.87 E-value=9.7 Score=30.46 Aligned_cols=47 Identities=17% Similarity=0.397 Sum_probs=40.1
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.++.|.. |++.+.-.+. .|.+-+- ||....+.|.++.||.+.-.|--
T Consensus 143 vlP~~~~--v~~~~tS~DV-------iHsf~vP~lg~K~DavPG~~n~~~~~~~~~G~y~g~CsE 198 (227)
T MTH00117 143 VIPMESP--IRILITAEDV-------LHSWAVPSLGVKTDAVPGRLNQTSFITTRPGVFYGQCSE 198 (227)
T ss_pred EEecCce--EEEEEEecch-------hhcccccccCceeEecCCceEEEEEEEcccceEEEEecc
Confidence 6799988 9999887664 5888887 88888899999999999999964
No 64
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=78.97 E-value=6.1 Score=30.39 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=40.3
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.++.|.. |++.+.-.+. .|.|.+- ||....+.|.++.||.+...|.-
T Consensus 76 vLP~g~~--Vr~~lTS~DV-------IHSF~VP~lgvK~DavPGr~n~l~~~~~~~G~y~gqCsE 131 (162)
T PTZ00047 76 TLPTRTH--IRFLITATDV-------IHSWSVPSLGIKADAIPGRLHKINTFILREGVFYGQCSE 131 (162)
T ss_pred EEeCCCE--EEEEEEeCcc-------ceeeeccccCceeeccCCceEEEEEecCCCeEEEEEcch
Confidence 5799988 9998887664 5999888 88778889999999999999974
No 65
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=77.90 E-value=14 Score=29.65 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=39.9
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.+|.|.. |++.+.-.+. .|.+-+- ||....+.|.++.||.+...|.-
T Consensus 143 vlP~~~~--v~~~~tS~DV-------iHsf~iP~lg~k~daiPG~~~~~~~~~~~~G~~~g~Cse 198 (230)
T MTH00185 143 VVPMESP--IRVLITAEDV-------LHSWTVPALGVKMDAVPGRLNQATFIISRPGLYYGQCSE 198 (230)
T ss_pred EEecCCE--EEEEEEcCcc-------cccccccccCceeEecCCceEEEEEEeCCcEEEEEEchh
Confidence 5799988 9999886664 5888777 88888889999999999999974
No 66
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=77.59 E-value=9.2 Score=30.48 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=39.8
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEec
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCH 111 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCH 111 (146)
.++.|.. |++.+.-.+. .|.+.+- ||..-.+.|.++.||.+...|-
T Consensus 143 ~lP~~~~--v~~~~tS~DV-------iHsf~vP~l~~K~DaiPG~~n~~~~~~~~~G~y~g~Cs 197 (226)
T MTH00139 143 VLPYKSN--IRALITAADV-------LHSWTVPSLGVKIDAVPGRLNQVGFFINRPGVFYGQCS 197 (226)
T ss_pred EEecCCE--EEEEEecCcc-------ccceeccccCccccCCCCcEEEEEEEcCCCEEEEEECh
Confidence 6799988 9998886664 5999888 8888889999999999999995
No 67
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=76.68 E-value=5.6 Score=33.64 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=41.5
Q ss_pred cccccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEec
Q 047006 54 FGCSLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCH 111 (146)
Q Consensus 54 ng~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCH 111 (146)
|=..++.|.. |++.+.-.+. .|.|.+- ||-...+.|.+|.||.+.-.|-
T Consensus 151 NeL~iP~g~p--V~f~lTS~DV-------iHSF~IP~Lg~K~damPG~~n~l~~~a~~~G~Y~G~Ca 208 (315)
T PRK10525 151 NEIAFPANVP--VYFKVTSNSV-------MNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISA 208 (315)
T ss_pred ccEEEecCCE--EEEEEEEchh-------hhhhhhhhhCCeeecCCCceeEEEEEcCCCEEEEEECh
Confidence 4446899988 9999987765 4888877 8888899999999999999995
No 68
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=76.11 E-value=13 Score=29.97 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=40.6
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.++.|+. |++.+...+. .|.+.+- ||....+.|.++.||.+..-|.-
T Consensus 147 vlP~~~~--v~~~itS~DV-------iHsf~vp~lg~k~daiPG~~~~~~~~~~~~G~y~g~Cse 202 (234)
T MTH00051 147 IVPIQTQ--VRVLVTAADV-------LHSFAVPSLSVKIDAVPGRLNQTSFFIKRPGVFYGQCSE 202 (234)
T ss_pred EEecCcE--EEEEEEeCch-------hccccccccCceeEccCCceEeEEEEeCCCEEEEEEChh
Confidence 5899988 9999988764 5888887 88888889999999999999974
No 69
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=75.51 E-value=17 Score=29.17 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=40.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.+|.|.. |++.+.-.+. .|.+-+- ||....+.|.++.||.+...|.-
T Consensus 143 vlP~~~~--v~~~~tS~DV-------iHsf~ip~~~~k~da~PG~~~~~~~~~~~~G~~~g~C~e 198 (230)
T MTH00129 143 VVPVESP--IRVLVSAEDV-------LHSWAVPALGVKMDAVPGRLNQTAFIASRPGVFYGQCSE 198 (230)
T ss_pred EEecCcE--EEEEEEeCcc-------ccceeccccCCccccCCCceEEEEEEeCCceEEEEEChh
Confidence 5799998 9999887664 5888776 88888899999999999999974
No 70
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=73.77 E-value=14 Score=29.56 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=40.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.+|.|.. |++.+.-.+. .|.+-+- ||....+.|.++.||.+..-|.-
T Consensus 143 vlP~~~~--v~~~~tS~DV-------iHsf~ip~lg~k~daiPG~~~~~~~~~~~~G~~~g~Cse 198 (227)
T MTH00098 143 VLPMEMP--IRMLISSEDV-------LHSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLYYGQCSE 198 (227)
T ss_pred EecCCCE--EEEEEEECcc-------cccccccccccceecCCCceEEEEEecCCcEEEEEECcc
Confidence 5899999 9999987664 5888776 88888899999999999999974
No 71
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=73.73 E-value=12 Score=29.87 Aligned_cols=47 Identities=23% Similarity=0.469 Sum_probs=40.1
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.++.|.. |++.+.-.+. .|.+-+- ||....+.|.++.||.+...|--
T Consensus 143 ~lP~~~~--v~~~~tS~DV-------iHsf~vp~l~~k~davPG~~~~~~~~~~~~G~y~g~Cse 198 (227)
T MTH00154 143 VLPMNTQ--IRILITAADV-------IHSWTVPSLGVKVDAVPGRLNQLNFLINRPGLFFGQCSE 198 (227)
T ss_pred EEecCCE--EEEEEEcCch-------hhheeccccCCeeecCCCceEEEEEEEcCceEEEEEeec
Confidence 5899988 9999886664 5888877 88888999999999999999963
No 72
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=73.52 E-value=15 Score=27.05 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=28.6
Q ss_pred CCCceEEEEEeC--CCee-EEEEecCccccccCceEEE
Q 047006 90 PHGWTELRFRAD--NPGA-WTFHCHIESHFYVGMGVVF 124 (146)
Q Consensus 90 ~~~~~~irf~ad--npG~-W~lHCHi~~H~~~GM~~~~ 124 (146)
+|+...|.|.+. .||. +.|=|=.-.|+. .|.+.|
T Consensus 87 gGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l 123 (125)
T TIGR02695 87 GGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTV 123 (125)
T ss_pred CCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEE
Confidence 677888999986 5885 999999999997 588876
No 73
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=71.90 E-value=26 Score=28.03 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=40.2
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.++.|.. |++.+.-.+. .|.+.+- ||....+.|.++.||.+..-|.-
T Consensus 143 ~lP~~~~--v~~~~tS~DV-------iHsf~vP~lg~k~da~PG~~n~~~~~~~~~G~~~g~C~e 198 (228)
T MTH00076 143 VVPMESP--IRMLITAEDV-------LHSWAVPSLGIKTDAIPGRLNQTSFIASRPGVYYGQCSE 198 (228)
T ss_pred EEecCCE--EEEEEEeccc-------cccccccccCceEEccCCcceeEEEEeCCcEEEEEEChh
Confidence 6899988 9999887664 5888887 88888899999999999999974
No 74
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=68.55 E-value=15 Score=29.55 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=40.0
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEec
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCH 111 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCH 111 (146)
.+|.|.. |++.+.-.+. .|.+.+- ||..-.+.|.++.||.+.-.|-
T Consensus 146 ~lP~~~~--v~~~itS~DV-------iHSf~vP~lg~K~DavPGr~n~~~~~~~~~G~y~g~Cs 200 (231)
T MTH00080 146 VLPCDTN--IRFCITSSDV-------IHSWALPSLSIKMDAMSGILSTLCYSFPMPGVFYGQCS 200 (231)
T ss_pred EeecCcE--EEEEEEeCcc-------cccccccccCceeeccCCceEEEEEEEcCceEEEEEeh
Confidence 5799988 9999987664 5888887 8888899999999999999996
No 75
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=62.70 E-value=35 Score=23.58 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.3
Q ss_pred eecCCCceEEEEEeCCCeeEEEEecCcc
Q 047006 87 HLHPHGWTELRFRADNPGAWTFHCHIES 114 (146)
Q Consensus 87 HlH~~~~~~irf~adnpG~W~lHCHi~~ 114 (146)
.|++++.+.++|..+-.|.-++-|++.+
T Consensus 30 ~l~~g~~~~~~F~~~~~~~t~f~C~~~~ 57 (110)
T PF05938_consen 30 VLKPGQSYSFSFRDNFFGTTLFWCHFRW 57 (110)
T ss_pred ECCCCCEEEEEEecCcCCceeEEEEEEE
Confidence 4558999999998877899999999887
No 76
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=54.35 E-value=34 Score=28.15 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=39.6
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecC
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHI 112 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi 112 (146)
.++.|.. |++.+.-.+. .|.+.+- ||..-.+.|.++.||.+.-.|.-
T Consensus 177 vlP~~~~--v~~~ltS~DV-------iHSf~vP~lgvK~DaiPGr~n~~~~~~~~~G~y~g~CsE 232 (262)
T MTH00027 177 ILPVDTN--VRVLITAADV-------LHSWTVPSLAVKMDAVPGRINETGFLIKRPGIFYGQCSE 232 (262)
T ss_pred EEeeCcE--EEEEEEcCcc-------ccceecccccCcccCCCCceeeEEEEcCCcEEEEEEcch
Confidence 5789988 9988876664 5888777 88888899999999999999974
No 77
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=43.17 E-value=12 Score=34.13 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCCcceec------CCCceE----EEEEeCCC---eeEEEEecCccccccCc
Q 047006 82 ETHPWHLH------PHGWTE----LRFRADNP---GAWTFHCHIESHFYVGM 120 (146)
Q Consensus 82 ~~HP~HlH------~~~~~~----irf~adnp---G~W~lHCHi~~H~~~GM 120 (146)
-+||+|+| ||.|.+ ++..-+-| -.-+..+|++.|...|=
T Consensus 227 lph~~h~H~nnlg~pgn~~~t~~t~~~~~g~~~~~~~~~h~tH~qf~syg~~ 278 (556)
T TIGR03121 227 LPHSIHVHCNNLGVPGNYETTLDTLDAAEGVKPNRNQVLHLTHVQFHSYGGT 278 (556)
T ss_pred CCceEEEecCCCCCCCchHHHHHHHHHhcCCCCCccceeEeeeeeeeccCCC
Confidence 38999999 665532 11111112 24578889998876653
No 78
>PLN03148 Blue copper-like protein; Provisional
Probab=42.31 E-value=49 Score=25.51 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCcceecCCCceEEEEEeCCCeeEEEEecCccccccCceEEEeccc
Q 047006 83 THPWHLHPHGWTELRFRADNPGAWTFHCHIESHFYVGMGVVFAEGI 128 (146)
Q Consensus 83 ~HP~HlH~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~~~~~~ 128 (146)
.+|+-.+..|..+ |..+.+|.+.|=|= ..|...||.+.+.+.+
T Consensus 77 ~~pi~~~tsG~d~--v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 77 EGAAGNWTSGKDF--IPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred CCCcceecCCCcE--EEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 4666666445444 55678999999998 5899999999887643
No 79
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=41.90 E-value=28 Score=24.74 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=18.8
Q ss_pred CCCceEEEcccc------cCCCCeeeEEEEEEeC
Q 047006 46 TSGARFSLFGCS------LPLTETDWGEVAGLNA 73 (146)
Q Consensus 46 ~~~~~~~ing~~------l~~g~~~~Veivl~N~ 73 (146)
..++++.|||.. ++.|+. ++|.+.|.
T Consensus 31 ~~~GrV~vNG~~aKpS~~VK~GD~--l~i~~~~~ 62 (100)
T COG1188 31 IEGGRVKVNGQRAKPSKEVKVGDI--LTIRFGNK 62 (100)
T ss_pred HHCCeEEECCEEcccccccCCCCE--EEEEeCCc
Confidence 367889999965 567777 88777553
No 80
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=40.22 E-value=24 Score=26.41 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCceEEEcccccCCCCeeeEEEEEEeCCC
Q 047006 46 TSGARFSLFGCSLPLTETDWGEVAGLNANS 75 (146)
Q Consensus 46 ~~~~~~~ing~~l~~g~~~~Veivl~N~~~ 75 (146)
.+|.+++|||-.++...+ |-+.|.|...
T Consensus 10 k~gEki~iNGAVlr~DRk--v~lellNdvt 37 (148)
T COG5443 10 KPGEKIFINGAVLRVDRK--VALELLNDVT 37 (148)
T ss_pred cCCCEEEEeccEEEEece--eEEEeeccch
Confidence 467899999999997777 9999999753
No 81
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=37.63 E-value=46 Score=30.13 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=31.6
Q ss_pred cCCCCeeeEEEEEEeCCCCCCCCCCCCcceec---------CCCceEEEEEeCCCeeEEEEecCc
Q 047006 58 LPLTETDWGEVAGLNANSMSSKTSETHPWHLH---------PHGWTELRFRADNPGAWTFHCHIE 113 (146)
Q Consensus 58 l~~g~~~~Veivl~N~~~~~~~~~~~HP~HlH---------~~~~~~irf~adnpG~W~lHCHi~ 113 (146)
++.++- |++.+.|..... ...|=+=+- |.....+-|+|+.||.|++-|--.
T Consensus 562 Vkq~DE--Vt~l~tnld~Ve---d~thgfv~p~~~v~~~v~pq~tasvtf~a~kpgv~w~ycs~f 621 (637)
T COG4263 562 VKQGDE--VTVLTTNLDEVE---DLTHGFVIPNYGVNMEVKPQRTASVTFYADKPGVAWYYCSWF 621 (637)
T ss_pred EecCcE--EEEEecccceec---cccceeeeccCceEEEEccCCceEEEEEccCCeeeehhhhhH
Confidence 455555 777776654331 113322222 556678899999999999988433
No 82
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=35.69 E-value=42 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=22.8
Q ss_pred CCCceEEEcccccC-CCCeeeEEEEEEeCCC
Q 047006 46 TSGARFSLFGCSLP-LTETDWGEVAGLNANS 75 (146)
Q Consensus 46 ~~~~~~~ing~~l~-~g~~~~Veivl~N~~~ 75 (146)
.+|.+++|||-.+. .+.+ +.+.|.|...
T Consensus 6 kpgERi~INGAVi~N~drr--~~l~i~n~a~ 34 (126)
T PF07378_consen 6 KPGERIIINGAVIRNGDRR--STLEIENDAP 34 (126)
T ss_pred cCCCEEEEcCeEEEeCCCc--eEEEEecCCc
Confidence 47889999999998 5556 8999998754
No 83
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=34.61 E-value=42 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCCceEEEcccccCCCCeeeEEEEEEeCCC
Q 047006 46 TSGARFSLFGCSLPLTETDWGEVAGLNANS 75 (146)
Q Consensus 46 ~~~~~~~ing~~l~~g~~~~Veivl~N~~~ 75 (146)
.++.+++|||-.+.-..+ +.+.|.|...
T Consensus 9 Kp~ERi~INGAVirndrr--~~l~i~n~a~ 36 (132)
T PRK00794 9 KPGERIFINGAVLRNDRK--VSLELLNDAT 36 (132)
T ss_pred cCCCEEEEcCeEEEeCCc--eEEEEecCCc
Confidence 477899999999888777 8888888653
No 84
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=32.01 E-value=63 Score=21.68 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=22.4
Q ss_pred cceecCCCceEEEEEeCCCeeEEEEecCccccccCc
Q 047006 85 PWHLHPHGWTELRFRADNPGAWTFHCHIESHFYVGM 120 (146)
Q Consensus 85 P~HlH~~~~~~irf~adnpG~W~lHCHi~~H~~~GM 120 (146)
|+-.+..|... +..+.||...|=|=+..|-..||
T Consensus 52 ~~~~~~~G~~~--v~L~~~G~~YFic~~~~HC~~Gq 85 (85)
T PF02298_consen 52 PISTYSTGNDT--VTLTKPGPHYFICGVPGHCQKGQ 85 (85)
T ss_dssp TSEEE-SSEEE--EEE-SSEEEEEE--STTTTTTT-
T ss_pred ceecccCCCEE--EEeCCCcCeEEEeCCCCcccccC
Confidence 55555556654 45678999999999999999998
No 85
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=26.94 E-value=72 Score=23.60 Aligned_cols=29 Identities=7% Similarity=-0.087 Sum_probs=21.4
Q ss_pred CCCceEEEcccccCCCCeeeEEEEEEeCCC
Q 047006 46 TSGARFSLFGCSLPLTETDWGEVAGLNANS 75 (146)
Q Consensus 46 ~~~~~~~ing~~l~~g~~~~Veivl~N~~~ 75 (146)
.++.+++|||-.+.-|++ .+.+.|.|...
T Consensus 8 KP~ERi~INGaVi~Ngdr-r~~l~i~n~a~ 36 (131)
T PRK12791 8 KPFERIVIGQSVITNSDT-RARFLIDGDAP 36 (131)
T ss_pred CCCCEEEEcCEEEEeCCc-ceEEEEeCCCc
Confidence 467899999999985543 27787788653
No 86
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=26.63 E-value=2.4e+02 Score=24.48 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=33.3
Q ss_pred ccCCCCeeeEEEEEEeCCCCCCCCCCCCccee--------c-----CCCceEEEEEeCCCeeEEEEecCccccccCceEE
Q 047006 57 SLPLTETDWGEVAGLNANSMSSKTSETHPWHL--------H-----PHGWTELRFRADNPGAWTFHCHIESHFYVGMGVV 123 (146)
Q Consensus 57 ~l~~g~~~~Veivl~N~~~~~~~~~~~HP~Hl--------H-----~~~~~~irf~adnpG~W~lHCHi~~H~~~GM~~~ 123 (146)
.++.| . +.+.+.|.+.. ++-|-+ . ||....+.+.. .||.+-|+| ..| ..|.+.
T Consensus 47 tVpAG-~--~~f~V~N~~~~------~~Efe~~~~~~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~ 112 (375)
T PRK10378 47 TVNAG-K--TQFIIQNHSQK------ALEWEILKGVMVVEERENIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGK 112 (375)
T ss_pred eeCCC-C--EEEEEEeCCCC------cceEEeeccccccccccccCCCCceEEEEec-CCceEEeec--CcC--CCCCce
Confidence 46777 3 56666887654 344322 1 56555554444 699999999 334 334555
Q ss_pred Eec
Q 047006 124 FAE 126 (146)
Q Consensus 124 ~~~ 126 (146)
|.+
T Consensus 113 l~V 115 (375)
T PRK10378 113 LIV 115 (375)
T ss_pred EEE
Confidence 654
No 87
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=24.21 E-value=30 Score=31.42 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCCcceec------CCCceEE----EEEeCCCe----eEEEEecCccccccCce
Q 047006 82 ETHPWHLH------PHGWTEL----RFRADNPG----AWTFHCHIESHFYVGMG 121 (146)
Q Consensus 82 ~~HP~HlH------~~~~~~i----rf~adnpG----~W~lHCHi~~H~~~GM~ 121 (146)
-+||+|+| ||.+.+. +..-+-+. .-+..+|++.|...|-.
T Consensus 223 ~ph~iH~h~nnlg~pgn~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~ 276 (541)
T cd01304 223 LPHSIHVHCNNLGVPGNYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTS 276 (541)
T ss_pred CceEEEEccccCCCCCcHHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCC
Confidence 38999999 5554221 11111121 35777888888776664
No 88
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=22.38 E-value=1.7e+02 Score=23.67 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=20.4
Q ss_pred CCCceEEEEEeCCCeeEEEEecCc
Q 047006 90 PHGWTELRFRADNPGAWTFHCHIE 113 (146)
Q Consensus 90 ~~~~~~irf~adnpG~W~lHCHi~ 113 (146)
.+++..|.|-+|.-|.|.++.-..
T Consensus 120 ~~~~t~iD~AvDE~GLWvIYat~~ 143 (250)
T PF02191_consen 120 WSGYTDIDFAVDENGLWVIYATED 143 (250)
T ss_pred cCCCceEEEEEcCCCEEEEEecCC
Confidence 567888999999999999997544
No 89
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This presumed zinc-binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to IPR000380 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=21.29 E-value=1e+02 Score=18.07 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=10.3
Q ss_pred CCCeeEEEEecC
Q 047006 101 DNPGAWTFHCHI 112 (146)
Q Consensus 101 dnpG~W~lHCHi 112 (146)
.|||..+|-|-.
T Consensus 19 ~N~GR~Fy~C~~ 30 (45)
T PF06839_consen 19 PNPGRRFYKCPN 30 (45)
T ss_pred CCCCCcceECCC
Confidence 689999999964
No 90
>KOG4767 consensus Cytochrome c oxidase, subunit II, and related proteins [Energy production and conversion]
Probab=21.27 E-value=3.2e+02 Score=22.03 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=51.9
Q ss_pred CCCCCCceeecCCCchhccccccchhhhhhcCCCcCC-CCceEEEcccccCCCCeeeEEEEEEeCCCCCCCCCCCCccee
Q 047006 10 EPVANFLEFVEETDPVRRICAGCAHAEAVQNGDYKST-SGARFSLFGCSLPLTETDWGEVAGLNANSMSSKTSETHPWHL 88 (146)
Q Consensus 10 ~~~~n~~~f~~pt~p~l~i~s~~~~~~~~~~~~~~~~-~~~~~~ing~~l~~g~~~~Veivl~N~~~~~~~~~~~HP~Hl 88 (146)
.+++++++|.+-..|..... .|+..-. -.+++ .++.... +++.+.-.+. .|.+-+
T Consensus 113 ysD~~~l~FdSYMip~e~Le----------~g~~RlLevDnr~-----VlP~dt~--IR~~vTsaDV-------iHswAv 168 (231)
T KOG4767|consen 113 YSDFNGLEFDSYMIPEEDLE----------LGQLRLLEVDNRV-----VLPIDTH--IRFIVTSADV-------IHSWAV 168 (231)
T ss_pred eccCCceeeeeccCCHHHcC----------CCCceEEeecceE-----EEecCCc--eEEEEEcccc-------eecccc
Confidence 46778888887777764222 2221101 12333 4688878 8888876653 577766
Q ss_pred c---------CCCceEEEEEeCCCeeEEEEec
Q 047006 89 H---------PHGWTELRFRADNPGAWTFHCH 111 (146)
Q Consensus 89 H---------~~~~~~irf~adnpG~W~lHCH 111 (146)
- ||.--.+.|.++.+|.+.=.|-
T Consensus 169 pslgvK~Da~pGrLnq~s~~i~r~GvfYGqCS 200 (231)
T KOG4767|consen 169 PSLGVKCDAIPGRLNQVSFSIQREGVFYGQCS 200 (231)
T ss_pred ccccceecccCceeeeeEEEeccCceEeehhh
Confidence 6 7777788999999999998884
No 91
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=20.38 E-value=1.6e+02 Score=23.09 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=14.4
Q ss_pred CCCcceecCCCceEEEEEeC
Q 047006 82 ETHPWHLHPHGWTELRFRAD 101 (146)
Q Consensus 82 ~~HP~HlH~~~~~~irf~ad 101 (146)
+.|..|.|+++++---+..+
T Consensus 107 g~h~~H~Hp~~~lSgvyYl~ 126 (201)
T TIGR02466 107 GTHSPHLHPGSVISGTYYVQ 126 (201)
T ss_pred CccCceECCCceEEEEEEEe
Confidence 48999999887765444443
Done!