BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047008
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex
 pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complex
 pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complex
 pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4
          Length = 290

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 34  LNRINGKCPLTPLEVGMMLR----GMGFDNNTSIYLASGKIYQAERHLASL 80
           +N +      TP EV   LR    G  F  NT  Y  S K+Y  ++ LA +
Sbjct: 203 INSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKV 253


>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
           Protein From Bovine (Spc-40) At 2.1 A Resolution
          Length = 361

 Score = 27.3 bits (59), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 51  MLRGMGFDNNTSIYLASGKIYQAERHLASLLKMFPLVYTKESLATPDELAPFEGYSSRLA 110
            LR  GFD     +L  G  ++ +RHL +L+K     + +E+ A  ++L      ++   
Sbjct: 105 FLRTHGFDGLDLAWLYPG--WRDKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKI 162

Query: 111 ALD--YTVCLFSE--VFVTT-----HGGNFPHFLMGHRRFLF----DGHSKTINPD 153
           A+D  Y +   S    F++      HGG      +GH   LF    DG S+  N D
Sbjct: 163 AIDRGYDIAQISRHLDFISLLTYDFHGG--WRGTVGHHSPLFRGNSDGSSRFSNAD 216


>pdb|1SF9|A Chain A, Crystal Structure Of Bacillus Subtilis Yfhh Protein :
           Putative Transcriptional Regulator
          Length = 128

 Score = 26.9 bits (58), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 60  NTSIYLASGKIYQAERH-----LASLLKMFPLVYTKESLATPDELAPFEGYSSRLAALDY 114
           NT I L S K  +AE+H     LA L +   +   K  L  P++ +P E Y       ++
Sbjct: 38  NTEIALLSEKARKAEQHGIINELAVLERKITMA--KAYLLNPEDYSPGETYRVENTEDEF 95

Query: 115 TVCLFSEVFV 124
           T+   + VF 
Sbjct: 96  TISYLNGVFA 105


>pdb|2EQJ|A Chain A, Solution Structure Of The Tudor Domain Of Metal-Response
           Element-Binding Transcription Factor 2
          Length = 66

 Score = 26.9 bits (58), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 141 FLFDGHSKTINPDKRKLVLLFQDMNISWVTFKD 173
             + G  K IN  K+   ++F+D + SWV +KD
Sbjct: 28  LFYLGTIKKINILKQSCFIIFEDSSKSWVLWKD 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,442,969
Number of Sequences: 62578
Number of extensions: 239701
Number of successful extensions: 735
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 4
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)