BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047008
         (227 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 37/211 (17%)

Query: 16  KKWWKGKFKRKDRVILPGLNRINGKCPLTPLEVGMMLRGMGFDNNTSIYLASGKIYQAER 75
           +K+ K  F   D+ ++    R  GKCPLTP EVG++LR M FDN+T IYLA+G+++  E+
Sbjct: 286 RKYRKENFA--DKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQ 343

Query: 76  HLASLLKMFPLVYTKESLATPDEL-APFEGYSSRLAALDYTVCLFSEVFVTTHGG--NFP 132
            +     +FP +    S+   +EL A  +G     +A+DY VCL S++F+ T+ G  NF 
Sbjct: 344 FMKPFRTLFPRLDNHSSVDPSEELSATSQGLIG--SAVDYMVCLLSDIFMPTYDGPSNFA 401

Query: 133 HFLMGHRRFLFDGHSKTINPDKRKLVLLFQDMNISWVTFKDQMEIMLSENDRKGIIVPRV 192
           + L+GHR  L+ G   TI PD++ L  +F                +  E  ++      V
Sbjct: 402 NNLLGHR--LYYGFRTTIRPDRKALAPIF----------------IAREKGKRAGFEEAV 443

Query: 193 RKINRKT------------SIYTYPLPECRC 211
           R++  KT            S YT   PEC C
Sbjct: 444 RRVMLKTNFGGPHKRVSPESFYTNSWPECFC 474


>sp|Q9W589|OFUT2_DROME GDP-fucose protein O-fucosyltransferase 2 OS=Drosophila
           melanogaster GN=O-fut2 PE=1 SV=1
          Length = 490

 Score = 32.3 bits (72), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 7   KNWKWICFEKKWWKGKFKRKDRVILPGLNRINGKCPLTPLEVGMMLRGMGFDNNTSIYLA 66
           K   ++C   +  +G F R      P L            +V  +LRG    N T+++LA
Sbjct: 328 KGGDYLCAHLR--RGDFVRSRDATTPTLK-------AAAQQVKQLLRGF---NMTTVFLA 375

Query: 67  SGKIYQAERHLASLLKMFPLV-YTKESLATPDELAPFEGYSSRLAALDYTVCLFSEVFVT 125
           +         L  L   F LV +  ES     EL         +A +D  VC ++  FV 
Sbjct: 376 TDATPYELMELKELFYRFRLVHFAPESNVQRRELK-----DGGVAVVDQLVCAYARYFVG 430

Query: 126 THGGNFPHFLMGHRRFLFDGHSKTIN 151
           T+   F + +   R  L    + T N
Sbjct: 431 TYESTFTYRIYEEREILGFTQASTFN 456


>sp|P34878|MTSB_LACLC Modification methylase ScrFIB OS=Lactococcus lactis subsp. cremoris
           GN=scrFIBM PE=3 SV=1
          Length = 360

 Score = 32.0 bits (71), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 16/72 (22%)

Query: 13  CFEKKWWKGKF-----KRKDRVILPGLNRINGKCP---LTPLEV--GMMLRGMGFD---- 58
           C +  +WKG F      +K R ++ G  R +GK P   LTP E    M +    FD    
Sbjct: 270 CLDSNYWKGTFLKDFLSKKRRQLVSGKVRPDGKYPARRLTPRETWRFMGVEDTNFDKASI 329

Query: 59  --NNTSIYLASG 68
             +NTS+Y  SG
Sbjct: 330 LVSNTSLYKQSG 341


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,455,215
Number of Sequences: 539616
Number of extensions: 3451650
Number of successful extensions: 8646
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8644
Number of HSP's gapped (non-prelim): 6
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)