Query 047008
Match_columns 227
No_of_seqs 124 out of 330
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 94.7 0.0027 9.1E-08 58.0 -2.1 82 59-149 303-384 (408)
2 3zy2_A Putative GDP-fucose pro 91.4 0.091 3.1E-06 48.9 2.7 78 47-142 270-347 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 80.3 0.84 2.9E-05 43.8 2.7 85 52-140 331-418 (526)
4 2eqr_A N-COR1, N-COR, nuclear 46.2 14 0.00048 25.1 2.7 23 34-56 6-28 (61)
5 1l2m_A REP protein; A+B fold, 43.9 25 0.00085 27.6 4.1 27 40-67 17-43 (118)
6 1p3q_Q VPS9P, vacuolar protein 42.9 8.4 0.00029 26.6 1.1 39 75-118 14-52 (54)
7 1wgl_A TOLL-interacting protei 31.2 17 0.00058 25.1 1.2 46 74-126 10-57 (59)
8 2dhy_A CUE domain-containing p 27.6 21 0.00072 25.4 1.2 14 74-87 19-32 (67)
9 2vsw_A Dual specificity protei 22.9 46 0.0016 25.1 2.4 27 77-103 121-147 (153)
10 2fr5_A Cytidine deaminase; tet 22.6 50 0.0017 26.4 2.6 38 51-93 105-142 (146)
11 2g7j_A Putative cytoplasmic pr 22.1 31 0.001 27.4 1.2 19 43-61 3-21 (124)
12 2hhc_A NODZ, nodulation fucosy 21.8 44 0.0015 28.8 2.3 72 59-134 215-292 (330)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=94.68 E-value=0.0027 Score=58.01 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=61.2
Q ss_pred CCceEEEEcccccCccchhhHHHHhCCCccccccCCCccccCCccCcccccccceeeeeecCceeeecCCCCchhhhhhc
Q 047008 59 NNTSIYLASGKIYQAERHLASLLKMFPLVYTKESLATPDELAPFEGYSSRLAALDYTVCLFSEVFVTTHGGNFPHFLMGH 138 (227)
Q Consensus 59 ~~T~IYlAageiyGG~~~m~~L~~~fPnl~tKe~l~~~~El~~f~~~ss~lAALDYiV~l~SDvFv~t~~Gnm~~~v~Gh 138 (227)
+-+.||||.-+ -+..+.-|++.+|.++.-.. ..+++..+ ....+|.||-.||..||+||-|....|...|.=.
T Consensus 303 ~~~~VyiATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~e 375 (408)
T 4ap5_A 303 RLDKVFVATDA---VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEE 375 (408)
T ss_dssp TCSCEEEEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCC---chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHH
Confidence 34579999865 24457889999998764332 22233332 2335688999999999999999999999999999
Q ss_pred cccccCCCCce
Q 047008 139 RRFLFDGHSKT 149 (227)
Q Consensus 139 R~y~~~G~~kT 149 (227)
|-+. |+...
T Consensus 376 R~~~--G~~~~ 384 (408)
T 4ap5_A 376 REIL--GLDPK 384 (408)
T ss_dssp HHHH--TBCGG
T ss_pred HHhc--CCCCC
Confidence 9999 87643
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=91.42 E-value=0.091 Score=48.86 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCCCCceEEEEcccccCccchhhHHHHhCCCccccccCCCccccCCccCcccccccceeeeeecCceeeec
Q 047008 47 EVGMMLRGMGFDNNTSIYLASGKIYQAERHLASLLKMFPLVYTKESLATPDELAPFEGYSSRLAALDYTVCLFSEVFVTT 126 (227)
Q Consensus 47 Evgl~L~alGf~~~T~IYlAageiyGG~~~m~~L~~~fPnl~tKe~l~~~~El~~f~~~ss~lAALDYiV~l~SDvFv~t 126 (227)
.+..+++.++ -..||||.-.- ..++-|++.|+...-+ +.+ +.| ..|+||-+||..||+||.+
T Consensus 270 qIk~~vk~~~---lksVFIATDa~----~~~~ELk~~L~~~~v~--vv~---~~p------e~a~ID~~I~~~A~~FIGN 331 (362)
T 3zy2_A 270 QIVEKVGSIG---AKSVFVASDKD----HMIDEINEALKPYEIE--AHR---QEP------DDMYTSLAIMGRADLFVGN 331 (362)
T ss_dssp HHHHHHHHHT---CSEEEEEESSC----CCHHHHHHHHGGGTCC--EEC---CSS------CCHHHHHHHHHHSSEEEEC
T ss_pred HHHHHHHhcC---CcEEEEecCCH----HHHHHHHHHhhccCce--EEE---eCC------chhHHHHHHHHhCCEeecC
Confidence 3444555554 56799999764 4578899988752111 100 111 1699999999999999999
Q ss_pred CCCCchhhhhhccccc
Q 047008 127 HGGNFPHFLMGHRRFL 142 (227)
Q Consensus 127 ~~Gnm~~~v~GhR~y~ 142 (227)
....|...|.=.|--.
T Consensus 332 ~~SSFSa~I~rERdi~ 347 (362)
T 3zy2_A 332 CVSTFSHIVKRERDHA 347 (362)
T ss_dssp TTCHHHHHHHHHHHHS
T ss_pred ccccccHHHHHHHHhc
Confidence 9999999998888776
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=80.27 E-value=0.84 Score=43.81 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=55.2
Q ss_pred HhhcCCCCCceEEEEcccccCccchhhHHHHhCCCc--cccccCCCcccc-CCccCcccccccceeeeeecCceeeecCC
Q 047008 52 LRGMGFDNNTSIYLASGKIYQAERHLASLLKMFPLV--YTKESLATPDEL-APFEGYSSRLAALDYTVCLFSEVFVTTHG 128 (227)
Q Consensus 52 L~alGf~~~T~IYlAageiyGG~~~m~~L~~~fPnl--~tKe~l~~~~El-~~f~~~ss~lAALDYiV~l~SDvFv~t~~ 128 (227)
|+....+..+.||||+.+ ...++-+++.||+. ++-........+ ..+...+-.-+-+|.++-+++|+||-|.+
T Consensus 331 l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~s 406 (526)
T 2de0_X 331 LARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFS 406 (526)
T ss_dssp HHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTT
T ss_pred HHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCC
Confidence 444467889999999988 46788888899986 221111111111 11100111236789999999999999999
Q ss_pred CCchhhhhhccc
Q 047008 129 GNFPHFLMGHRR 140 (227)
Q Consensus 129 Gnm~~~v~GhR~ 140 (227)
.|+.+++...+.
T Consensus 407 S~~srla~~l~~ 418 (526)
T 2de0_X 407 SQVCRVAYEIMQ 418 (526)
T ss_dssp SHHHHHHHHHHT
T ss_pred CHHHHHHHHHhc
Confidence 888888665543
No 4
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.19 E-value=14 Score=25.10 Aligned_cols=23 Identities=9% Similarity=-0.227 Sum_probs=18.9
Q ss_pred ccccCCCCCCCHHHHHHHHhhcC
Q 047008 34 LNRINGKCPLTPLEVGMMLRGMG 56 (227)
Q Consensus 34 ~~R~~G~CPLtP~Evgl~L~alG 56 (227)
++..+...|.||+|..+|++++-
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHH
Confidence 34446889999999999999974
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=43.87 E-value=25 Score=27.65 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHhhcCCCCCceEEEEc
Q 047008 40 KCPLTPLEVGMMLRGMGFDNNTSIYLAS 67 (227)
Q Consensus 40 ~CPLtP~Evgl~L~alGf~~~T~IYlAa 67 (227)
.|||++||+...|+.|--+.+ ..||.-
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i 43 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKI 43 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeee
Confidence 799999999999999986654 455543
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=42.94 E-value=8.4 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=20.0
Q ss_pred chhhHHHHhCCCccccccCCCccccCCccCcccccccceeeeee
Q 047008 75 RHLASLLKMFPLVYTKESLATPDELAPFEGYSSRLAALDYTVCL 118 (227)
Q Consensus 75 ~~m~~L~~~fPnl~tKe~l~~~~El~~f~~~ss~lAALDYiV~l 118 (227)
..++-|++||||+- ++.|- .=| ..|.++.-+|||....+
T Consensus 14 ~~~~~L~~MFP~lD-~evI~--~Vl--~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD-PSLIE--DVC--IAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHSTTSC-HHHHH--HHH--HHSCC--CGGGC-----
T ss_pred HHHHHHHHHcccCC-HHHHH--HHH--HHcCCCHHHHHHHHHhh
Confidence 45788999999983 33321 111 13567777888876554
No 7
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.19 E-value=17 Score=25.10 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=28.8
Q ss_pred cchhhHHHHhCCCccccccCCCccccCCc--cCcccccccceeeeeecCceeeec
Q 047008 74 ERHLASLLKMFPLVYTKESLATPDELAPF--EGYSSRLAALDYTVCLFSEVFVTT 126 (227)
Q Consensus 74 ~~~m~~L~~~fPnl~tKe~l~~~~El~~f--~~~ss~lAALDYiV~l~SDvFv~t 126 (227)
+..++-|++|||++ +.+-++.. .+..+..+|||-+..+..+-|=|+
T Consensus 10 ee~l~~L~emFP~l-------d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-------DQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSS-------CHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 45789999999998 22333222 134445678887777766655443
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.62 E-value=21 Score=25.37 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.7
Q ss_pred cchhhHHHHhCCCc
Q 047008 74 ERHLASLLKMFPLV 87 (227)
Q Consensus 74 ~~~m~~L~~~fPnl 87 (227)
+..++-|++|||++
T Consensus 19 ~~~v~~L~~MFP~l 32 (67)
T 2dhy_A 19 NQAMDDFKTMFPNM 32 (67)
T ss_dssp HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHCCCC
Confidence 34678899999998
No 9
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=22.85 E-value=46 Score=25.09 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=7.7
Q ss_pred hhHHHHhCCCccccccCCCccccCCcc
Q 047008 77 LASLLKMFPLVYTKESLATPDELAPFE 103 (227)
Q Consensus 77 m~~L~~~fPnl~tKe~l~~~~El~~f~ 103 (227)
+....+.||.+.+......+..+..|.
T Consensus 121 ~~~W~~~~~~~~~~~~~~~p~~~~~~~ 147 (153)
T 2vsw_A 121 FAEFSRCFPGLCEGKSTLVPTCISQPA 147 (153)
T ss_dssp HHHHHHHCGGGEEC-------------
T ss_pred HHHHHHhChhhhcCCCCcCCCCCCCcc
Confidence 344555566665555444455555443
No 10
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=22.61 E-value=50 Score=26.35 Aligned_cols=38 Identities=16% Similarity=0.449 Sum_probs=25.7
Q ss_pred HHhhcCCCCCceEEEEcccccCccchhhHHHHhCCCccccccC
Q 047008 51 MLRGMGFDNNTSIYLASGKIYQAERHLASLLKMFPLVYTKESL 93 (227)
Q Consensus 51 ~L~alGf~~~T~IYlAageiyGG~~~m~~L~~~fPnl~tKe~l 93 (227)
+|.-+| .++.||++..+ |+.....|.++.|.-++.++|
T Consensus 105 ~l~E~~--~~~~v~~~~~~---g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 105 VMREFG--TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp HHHHTC--SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGG
T ss_pred HHHHhC--CCCEEEEECCC---CCEEEEEHHHhCCCCCChHHH
Confidence 555566 67888887654 333345688888888777666
No 11
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=22.07 E-value=31 Score=27.39 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=16.7
Q ss_pred CCHHHHHHHHhhcCCCCCc
Q 047008 43 LTPLEVGMMLRGMGFDNNT 61 (227)
Q Consensus 43 LtP~Evgl~L~alGf~~~T 61 (227)
|-|.||+.+|..-||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999997653
No 12
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=21.83 E-value=44 Score=28.78 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=42.2
Q ss_pred CCceEEEEcccccCccchhhHHHHhCCCccccc-cCCCc--cccCC-cc-CcccccccceeeeeecCceee-ecCCCCch
Q 047008 59 NNTSIYLASGKIYQAERHLASLLKMFPLVYTKE-SLATP--DELAP-FE-GYSSRLAALDYTVCLFSEVFV-TTHGGNFP 132 (227)
Q Consensus 59 ~~T~IYlAageiyGG~~~m~~L~~~fPnl~tKe-~l~~~--~El~~-f~-~~ss~lAALDYiV~l~SDvFv-~t~~Gnm~ 132 (227)
.+..||||+-+. ..++-|+++||++..-. .+... ..+-. .. ......+.+|.+.-..+|.+| .+....|+
T Consensus 215 ~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~LLS~cd~~I~~~~~STFs 290 (330)
T 2hhc_A 215 KPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATVIRFPPTSAFT 290 (330)
T ss_dssp SCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHHHTTCSEEEEESTTCGGG
T ss_pred CceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHHHHcCCeeEECCCCCCHH
Confidence 468999999985 46788999999853321 11100 00000 00 012345788999999999999 43344454
Q ss_pred hh
Q 047008 133 HF 134 (227)
Q Consensus 133 ~~ 134 (227)
-.
T Consensus 291 ~~ 292 (330)
T 2hhc_A 291 RY 292 (330)
T ss_dssp HH
T ss_pred HH
Confidence 43
Done!