Query 047008
Match_columns 227
No_of_seqs 124 out of 330
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 11:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047008.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047008hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya2 a.5.2.1 (A:317-360) DN 67.6 0.17 1.2E-05 32.5 -2.4 26 44-69 1-30 (44)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 57.9 4.6 0.00033 30.1 3.8 26 40-66 17-42 (118)
3 d1okga1 c.46.1.2 (A:7-162) 3-m 40.7 15 0.0011 27.5 4.5 31 36-66 64-95 (156)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 40.2 4.7 0.00034 26.7 1.2 49 74-127 10-58 (59)
5 d1mn3a_ a.5.2.4 (A:) Vacuolar 36.6 5.7 0.00041 25.8 1.1 14 74-87 13-26 (54)
6 d1sfsa_ c.1.8.8 (A:) Unnamed h 33.9 9 0.00066 30.9 2.2 18 52-69 85-102 (213)
7 d1urha2 c.46.1.2 (A:149-268) 3 31.5 41 0.003 22.5 5.3 33 37-69 59-91 (120)
8 d1fcda2 c.3.1.5 (A:115-255) Fl 31.3 16 0.0012 26.5 3.1 54 37-90 43-100 (141)
9 d1rhsa1 c.46.1.2 (A:1-149) Rho 28.6 31 0.0023 24.9 4.4 32 42-73 74-105 (149)
10 d1uara1 c.46.1.2 (A:2-144) Sul 27.6 26 0.0019 25.2 3.7 29 39-68 58-86 (143)
11 d1urha1 c.46.1.2 (A:2-148) 3-m 27.2 24 0.0017 25.5 3.4 25 44-68 69-93 (147)
12 d1jjcb2 a.6.1.1 (B:400-474) Do 27.0 13 0.00096 24.7 1.7 23 35-58 13-35 (75)
13 d1zq1c2 d.74.4.1 (C:277-407) G 25.3 29 0.0021 25.0 3.6 31 40-70 80-110 (131)
14 d2g7ja1 d.198.5.1 (A:1-112) Pu 23.7 13 0.00097 27.1 1.3 18 43-60 3-20 (112)
15 d1tiza_ a.39.1.5 (A:) Calmodul 23.4 16 0.0011 22.8 1.5 27 151-177 33-65 (67)
16 d2f3na1 a.60.1.2 (A:2-65) Sh3 22.2 20 0.0015 22.2 1.9 24 44-67 5-28 (64)
17 d2fr5a1 c.97.1.1 (A:11-146) mo 21.3 22 0.0016 26.1 2.1 40 50-94 94-133 (136)
18 d2d6fc2 d.74.4.1 (C:271-395) G 21.1 42 0.0031 23.8 3.8 28 42-69 76-103 (125)
19 d2hkva1 a.213.1.2 (A:1-147) Hy 20.2 18 0.0013 25.3 1.4 26 39-64 107-147 (147)
No 1
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.65 E-value=0.17 Score=32.51 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=19.0
Q ss_pred CHHHHHHH--HhhcCCCCCc--eEEEEccc
Q 047008 44 TPLEVGMM--LRGMGFDNNT--SIYLASGK 69 (227)
Q Consensus 44 tP~Evgl~--L~alGf~~~T--~IYlAage 69 (227)
||+|..-+ |.+|||+++. +.|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 56665544 8899999987 56777655
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=57.95 E-value=4.6 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHhhcCCCCCceEEEE
Q 047008 40 KCPLTPLEVGMMLRGMGFDNNTSIYLA 66 (227)
Q Consensus 40 ~CPLtP~Evgl~L~alGf~~~T~IYlA 66 (227)
+|||||||+.-.|+.|==+.+. .||.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~ 42 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEE
Confidence 6999999999999999766655 4554
No 3
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=40.74 E-value=15 Score=27.53 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=24.6
Q ss_pred ccCCCCCC-CHHHHHHHHhhcCCCCCceEEEE
Q 047008 36 RINGKCPL-TPLEVGMMLRGMGFDNNTSIYLA 66 (227)
Q Consensus 36 R~~G~CPL-tP~Evgl~L~alGf~~~T~IYlA 66 (227)
...|.=|| +|++..-.|+++|++++|.|-|=
T Consensus 64 ~~~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 64 TSTARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp TCCCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CCCCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 33444344 89999999999999999998774
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.19 E-value=4.7 Score=26.70 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=31.6
Q ss_pred cchhhHHHHhCCCccccccCCCccccCCccCcccccccceeeeeecCceeeecC
Q 047008 74 ERHLASLLKMFPLVYTKESLATPDELAPFEGYSSRLAALDYTVCLFSEVFVTTH 127 (227)
Q Consensus 74 ~~~m~~L~~~fPnl~tKe~l~~~~El~~f~~~ss~lAALDYiV~l~SDvFv~t~ 127 (227)
++.++-|+.|||++-. +.| ..=|.. +..+..+|+|=+....-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D~-~vI--~~VL~a--~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQ-EVI--RSVLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSCH-HHH--HHHHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCCH-HHH--HHHHHH--cCCCHHHHHHHHHhcCCCCcCCCC
Confidence 5678999999999842 222 112222 556667788877777777666653
No 5
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.59 E-value=5.7 Score=25.83 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=11.8
Q ss_pred cchhhHHHHhCCCc
Q 047008 74 ERHLASLLKMFPLV 87 (227)
Q Consensus 74 ~~~m~~L~~~fPnl 87 (227)
+..++-|++|||++
T Consensus 13 ~e~~~~Lk~MFP~~ 26 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHCCCC
Confidence 34688999999998
No 6
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=33.87 E-value=9 Score=30.93 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=15.1
Q ss_pred HhhcCCCCCceEEEEccc
Q 047008 52 LRGMGFDNNTSIYLASGK 69 (227)
Q Consensus 52 L~alGf~~~T~IYlAage 69 (227)
=++||||..|.||++=-.
T Consensus 85 A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 85 ARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHTTCCSSCEEEEECCT
T ss_pred HHHcCCCCCCEEEEEecc
Confidence 367999999999998654
No 7
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=31.51 E-value=41 Score=22.50 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.5
Q ss_pred cCCCCCCCHHHHHHHHhhcCCCCCceEEEEccc
Q 047008 37 INGKCPLTPLEVGMMLRGMGFDNNTSIYLASGK 69 (227)
Q Consensus 37 ~~G~CPLtP~Evgl~L~alGf~~~T~IYlAage 69 (227)
....+-..++|....+..+|.+.++.|++--+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~g~~~~~~ii~yC~s 91 (120)
T d1urha2 59 VREGELKTTDELDAIFFGRGVSYDKPIIVSCGS 91 (120)
T ss_dssp BSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCS
T ss_pred ccccccCCHHHhhhhhhhcccCccCceEEEccc
Confidence 345677889999999999999999998887664
No 8
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=31.31 E-value=16 Score=26.51 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=37.2
Q ss_pred cCCCCCCCHHHHHHHH----hhcCCCCCceEEEEcccccCccchhhHHHHhCCCcccc
Q 047008 37 INGKCPLTPLEVGMML----RGMGFDNNTSIYLASGKIYQAERHLASLLKMFPLVYTK 90 (227)
Q Consensus 37 ~~G~CPLtP~Evgl~L----~alGf~~~T~IYlAageiyGG~~~m~~L~~~fPnl~tK 90 (227)
.-=+||=-|.|+++|+ |.-|-..+..|..+......+......+..++..+..+
T Consensus 43 ~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (141)
T d1fcda2 43 APFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTEN 100 (141)
T ss_dssp SSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSS
T ss_pred CCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHh
Confidence 3458999999999987 77899999988877666544333334455556554433
No 9
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.60 E-value=31 Score=24.90 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHhhcCCCCCceEEEEcccccCc
Q 047008 42 PLTPLEVGMMLRGMGFDNNTSIYLASGKIYQA 73 (227)
Q Consensus 42 PLtP~Evgl~L~alGf~~~T~IYlAageiyGG 73 (227)
-.++++..-.|+++|+++++.|-|-.+.-.||
T Consensus 74 ~~~~~~~~~~l~~~Gi~~~~~vVvy~~~~~~~ 105 (149)
T d1rhsa1 74 LPSEAGFADYVGSLGISNDTHVVVYDGDDLGS 105 (149)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCCSSSC
T ss_pred hhhhHHHHHHHhhhhccCCceeEEeeccCCcc
Confidence 36889999999999999999988887654443
No 10
>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}
Probab=27.58 E-value=26 Score=25.19 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCceEEEEcc
Q 047008 39 GKCPLTPLEVGMMLRGMGFDNNTSIYLASG 68 (227)
Q Consensus 39 G~CPLtP~Evgl~L~alGf~~~T~IYlAag 68 (227)
+.+| ++++..-+|+++|.++++.|-+-.+
T Consensus 58 ~~l~-~~~~l~~~~~~~Gi~~~~~iVvy~~ 86 (143)
T d1uara1 58 RDFI-SEEEFAKLMERLGISNDTTVVLYGD 86 (143)
T ss_dssp SSBC-CHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred ccch-hhHHHHHHhhhhccCCCceEEEecC
Confidence 4564 7999999999999999998876654
No 11
>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=27.19 E-value=24 Score=25.49 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=22.4
Q ss_pred CHHHHHHHHhhcCCCCCceEEEEcc
Q 047008 44 TPLEVGMMLRGMGFDNNTSIYLASG 68 (227)
Q Consensus 44 tP~Evgl~L~alGf~~~T~IYlAag 68 (227)
.|++...+|+.+|.++++.|.|-..
T Consensus 69 ~~~~~~~~l~~~Gi~~~~~vVvY~~ 93 (147)
T d1urha1 69 RPETFAVAMRELGVNQDKHLIVYDE 93 (147)
T ss_dssp CHHHHHHHHHHTTCCTTSEEEEECS
T ss_pred CHHHHHHHHHHhCcCCCCeEEEEeC
Confidence 7999999999999999999887653
No 12
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=27.05 E-value=13 Score=24.66 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred cccCCCCCCCHHHHHHHHhhcCCC
Q 047008 35 NRINGKCPLTPLEVGMMLRGMGFD 58 (227)
Q Consensus 35 ~R~~G~CPLtP~Evgl~L~alGf~ 58 (227)
.+..|.. ++++|+.-+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 5667776 9999999999999995
No 13
>d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=25.35 E-value=29 Score=25.01 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHhhcCCCCCceEEEEcccc
Q 047008 40 KCPLTPLEVGMMLRGMGFDNNTSIYLASGKI 70 (227)
Q Consensus 40 ~CPLtP~Evgl~L~alGf~~~T~IYlAagei 70 (227)
...|+++|+.-+++.||....--|++++|+-
T Consensus 80 ~k~l~~e~~~~l~~~l~~~~GD~il~~Ag~~ 110 (131)
T d1zq1c2 80 NYGISQEEVNKVIERLNLSEEDAFVLVAAEE 110 (131)
T ss_dssp BTTBCHHHHHHHHHHTTCCSSCEEEEEEESH
T ss_pred ccccCHHHHHHHHHHhCCCCCCEEEEEeCCH
Confidence 3569999999999999999999999998873
No 14
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=23.66 E-value=13 Score=27.10 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=16.1
Q ss_pred CCHHHHHHHHhhcCCCCC
Q 047008 43 LTPLEVGMMLRGMGFDNN 60 (227)
Q Consensus 43 LtP~Evgl~L~alGf~~~ 60 (227)
|-|.||+.+|..-||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999755
No 15
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.37 E-value=16 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=19.3
Q ss_pred ccChHHHHHHh---h---cCCCCHHHHHHHHHH
Q 047008 151 NPDKRKLVLLF---Q---DMNISWVTFKDQMEI 177 (227)
Q Consensus 151 ~Pdrk~la~lf---~---~~~~~w~~f~~~v~~ 177 (227)
.+....+-.+| | ++.|+|+||...+++
T Consensus 33 ~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~ 65 (67)
T d1tiza_ 33 YFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp TSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 34556666666 2 578999999988865
No 16
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=22.19 E-value=20 Score=22.23 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=19.3
Q ss_pred CHHHHHHHHhhcCCCCCceEEEEc
Q 047008 44 TPLEVGMMLRGMGFDNNTSIYLAS 67 (227)
Q Consensus 44 tP~Evgl~L~alGf~~~T~IYlAa 67 (227)
||+||+-.|+.+|++.=..++...
T Consensus 5 s~~~V~~wL~~~gl~~y~~~F~~~ 28 (64)
T d2f3na1 5 SKFDVGDWLESIHLGEHRDRFEDH 28 (64)
T ss_dssp CHHHHHHHHHHTTCGGGHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHC
Confidence 799999999999998766555443
No 17
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.27 E-value=22 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.363 Sum_probs=29.5
Q ss_pred HHHhhcCCCCCceEEEEcccccCccchhhHHHHhCCCccccccCC
Q 047008 50 MMLRGMGFDNNTSIYLASGKIYQAERHLASLLKMFPLVYTKESLA 94 (227)
Q Consensus 50 l~L~alGf~~~T~IYlAageiyGG~~~m~~L~~~fPnl~tKe~l~ 94 (227)
-+|.-+ ..++.||+...+ |+.....|.++.|.-+++++|-
T Consensus 94 Q~l~E~--~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHHHT--CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHHhh--CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhC
Confidence 345554 468899998765 4555668999999999888873
No 18
>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.09 E-value=42 Score=23.82 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHhhcCCCCCceEEEEccc
Q 047008 42 PLTPLEVGMMLRGMGFDNNTSIYLASGK 69 (227)
Q Consensus 42 PLtP~Evgl~L~alGf~~~T~IYlAage 69 (227)
-|+++|+.-+.+.+|....--|++++|+
T Consensus 76 ~l~~e~~~~i~~~~~~~~GD~i~f~ag~ 103 (125)
T d2d6fc2 76 GITEEEVRGLRDAVGASQGDAVVMVAHE 103 (125)
T ss_dssp SCCHHHHHHHHHHTTCCSSSEEEEEEEC
T ss_pred cccHHHHHHHHHHhCCCCCCEEEEEeCC
Confidence 3999999999999999999999999987
No 19
>d2hkva1 a.213.1.2 (A:1-147) Hypothetical protein ExigDRAFT_2445 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=20.20 E-value=18 Score=25.34 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=19.8
Q ss_pred CCCCCCHHHH---------------HHHHhhcCCCCCceEE
Q 047008 39 GKCPLTPLEV---------------GMMLRGMGFDNNTSIY 64 (227)
Q Consensus 39 G~CPLtP~Ev---------------gl~L~alGf~~~T~IY 64 (227)
+.-+.|..++ ..+||.+|++.+|.+|
T Consensus 107 ~g~~~t~~~~L~~~i~H~~hHrGQi~~~LR~lG~~p~~~l~ 147 (147)
T d2hkva1 107 WGVTDSTTGWLLEAAVHLYHHRSQLLDYLNLLGYDIKLDLF 147 (147)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred cCCCcCHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 3457787764 5789999999988765
Done!