BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047010
(153 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 64/195 (32%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------------- 33
C+C K D EA++V+D M G++PNV T TIL
Sbjct: 185 CHCKKKDPGEAKRVLDQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKP 244
Query: 34 -------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
EA+E++ ++K ++PD+YTYTA+MDGFCKVGRS+E MELL
Sbjct: 245 NIQTYNCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELL 304
Query: 75 NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
NEA+E G+ PNVV TFN ++ G+ K +L LM +
Sbjct: 305 NEAMEMGLAPNVV------------------TFNTLLDGYAKEGRPLKGFGVLKLMKQRK 346
Query: 135 KIPSRTLYDTLIKKL 149
+P Y TL+ L
Sbjct: 347 CMPDYISYSTLLHGL 361
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 22/143 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG-RSNEVMELLNEAIE----RGVTPNV 86
+L + ++ GL+ D +++ G C+ + N+++E+ E E RG
Sbjct: 367 VLAGLRIFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRGFVIEQ 426
Query: 87 VT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
T I+LH ++ +G+IPR IT NNVIQALC GK+DKA +L L
Sbjct: 427 STYALVIQALWVAKKVDDAFINLHQMVRLGYIPRLITINNVIQALCVGGKVDKAFYVLVL 486
Query: 130 MYEHGKIPSRTLYDTLIKKLDQQ 152
MYE+ KIPSR YD LI +L++Q
Sbjct: 487 MYENSKIPSRMSYDLLIHELNRQ 509
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
L+P+ +T++ ++ CK E +L++ +++G PNV TL L N
Sbjct: 171 SLEPNSWTFSIMVRCHCKKKDPGEAKRVLDQMMQKGFNPNVATLTILINSFCKMGQLQNT 230
Query: 95 -----VID-IGHIPRTITFNNVIQALCGVGKIDKALLLL 127
V+D IG P T+N +++ +C VG+ID+A L+
Sbjct: 231 FQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRIDEAFELM 269
>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 271
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 46/132 (34%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------------- 33
C+C +ND EA++V+D M +NG +PNV T+T L
Sbjct: 131 CHCKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQP 190
Query: 34 -------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
EAYE+L ++K ++PD+YTYTA+MDGFCKVGRS E M+LL
Sbjct: 191 NVQTYNCLLKGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLL 250
Query: 75 NEAIERGVTPNV 86
NEAIE +T ++
Sbjct: 251 NEAIEMELTDDI 262
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 29/148 (19%)
Query: 9 FEAR-KVIDYMFDNGYHPNVTTY-------TILEAYEMLMNVKND----GLKPDVYTYTA 56
F+ R +++D +G P+++ + I ++ +N+ +D GL PD +T++
Sbjct: 68 FKGRTEILDVFGKDGEIPSISDFNDLLMALVIANELDLALNMYSDVSTLGLVPDSWTFSI 127
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VID----IG 99
V+ CK ++E +L+ +E G+ PNVVT L N VID IG
Sbjct: 128 VIRCHCKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIG 187
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLL 127
P T+N +++ LC +GK+++A +L
Sbjct: 188 CQPNVQTYNCLLKGLCYIGKVEEAYEIL 215
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ N +A + D + G+ PNV TYT L A E+ + ++G++P+
Sbjct: 162 FCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPN 221
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHI-------- 101
V TY +++ G C++GR ++ LL + ++RG+ PNV+T L + + +G I
Sbjct: 222 VVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYK 281
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ +I LC G++D+A + +LM +G P+ Y TLI
Sbjct: 282 VMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLI 334
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EAR++ M NGY+PN TYT L + ++ + GL +
Sbjct: 303 CTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANT 362
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
TYT ++ G+C VGR + E+ N+ R P++ T + L + G++ +
Sbjct: 363 ITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKY 422
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+T+ +IQ +C VGK++ A L ++ G P+ Y T+I
Sbjct: 423 MRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 475
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNV 95
G +PD+ T+T+++ GFC R + + L ++ + G PNVVT HL++
Sbjct: 147 GFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHA 206
Query: 96 IDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++I G P +T+N+++ LC +G+ A LL M + G P+ + LI
Sbjct: 207 VEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALI 264
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + +A ++ M G PNV T+T I+EA E+ + + PDV
Sbjct: 233 CEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDV 292
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+TYTA+++G C GR +E ++ G PN VT LIH +
Sbjct: 293 FTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYE 352
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + TIT+ +IQ C VG+ D A + M P Y+ L+ L
Sbjct: 353 MSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGL 407
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + YM N+ TYTI+ +A+++ ++ + G+KP+V TYT ++
Sbjct: 415 KALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMI 474
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPN 85
GFC+ G +E L + E G PN
Sbjct: 475 SGFCRRGFIHEADALFKKMKEDGFLPN 501
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A++V + M P++ TY +L +A + ++ + ++ TYT ++
Sbjct: 381 AQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQ 440
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CKVG+ + +L +G+ PNV IT+ +I C G
Sbjct: 441 GMCKVGKVEDAFDLFCSLFSKGMKPNV------------------ITYTTMISGFCRRGF 482
Query: 120 IDKALLLLFLMYEHGKIPSRTL 141
I +A L M E G +P+ ++
Sbjct: 483 IHEADALFKKMKEDGFLPNESV 504
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C ++ A + D M +G PN TY+ L EA +ML + G++P
Sbjct: 247 HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPT 306
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTYT + C G S+E +ELL + +RG PN+ T L H
Sbjct: 307 VYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYH 366
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G +P T+T+N +I LC G+ + A + M HG +PS Y+ +IK
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIK 420
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 29/162 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C D +A + D M G PNV TY L A +L +K +GLKP
Sbjct: 421 CFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKP 480
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D +TYT ++ GF + G+ L +E G++PN V T+
Sbjct: 481 DAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV------------------TYTA 522
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I + K+D AL L + M E G +PS Y+ +I +
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA+ ++ ++F +PN TYT L A+ M + DG P+
Sbjct: 213 CKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNS 272
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGH---------- 100
TY+ +++G C GR E M++L E +++G+ P V T I L ++ D G
Sbjct: 273 VTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGK 332
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P TF +I L GK + A+ L M G +P+ Y+ LI +L
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQL 387
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
C++ EA +++ M G P V TYTI EA E+L +K G P++
Sbjct: 283 CSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNI 342
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------- 98
T+TA++ G + G+ + L ++ + G+ P VT L N + +
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKW 402
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P T T+N +I+ C +G I KA+++ M + G P+ Y+TLI
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + A ++++ M NG P+ TYT L A + + G+ P+
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHN--- 94
TYTA++DG+ + + ++ + L + +E G P+ T + N
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCG 576
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G +P IT+ + I LC G+ A + M + P+ Y +LI L Q+
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQE 635
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M ++G P+ TY ++ EA + GL P+V TYT+ +DG C+ GR
Sbjct: 543 MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH----------------LHNVIDIGHIPRTITF 107
+ ++ +E +R PN+ T LI+ L + G P T+
Sbjct: 603 TGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTY 662
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ LCG G+ +A L+ M + G PS +Y L+
Sbjct: 663 TTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALL 701
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 30/162 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M ++G PN TYT + +A + + G P TY ++ GF K
Sbjct: 508 MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS 567
Query: 67 SNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNN 109
+E + +++G+ PNV+T H + + P T+++
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSS 627
Query: 110 VIQALCGVGKIDKALL--LLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC G+ + A + LL + +G P+ Y TL+K L
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-- 92
A +M + + N G++P + T+ +++ CK GR E +++ PN T L
Sbjct: 186 ARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLIL 245
Query: 93 -----HNV----------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
HN+ + G P ++T++ +I LC G++++A+ +L M + G P
Sbjct: 246 GHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305
Query: 138 S 138
+
Sbjct: 306 T 306
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C ++ A + D M +G PN TY+ L EA +ML + G++P
Sbjct: 247 HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPT 306
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTYT + C G S+E +ELL + +RG PN+ T L H
Sbjct: 307 VYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYH 366
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G +P T+T+N +I LC G+ + A + M HG +PS Y+ +IK
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIK 420
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 29/162 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C D +A + D M G PNV TY L A +L +K +GLKP
Sbjct: 421 CFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKP 480
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D +TYT ++ GF + G+ L +E G++PN V T+
Sbjct: 481 DAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV------------------TYTA 522
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I + K+D AL L + M E G +PS Y+ +I +
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA+ ++ ++F +PN TYT L A+ M + DG P+
Sbjct: 213 CKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNS 272
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGH---------- 100
TY+ +++G C GR E M++L E +++G+ P V T I L ++ D G
Sbjct: 273 VTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGK 332
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P TF +I L GK + A+ L M G +P+ Y+ LI +L
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQL 387
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
C++ EA +++ M G P V TYTI EA E+L +K G P++
Sbjct: 283 CSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNI 342
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------- 98
T+TA++ G + G+ + L ++ + G+ P VT L N + +
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKW 402
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P T T+N +I+ C +G I KA+++ M + G P+ Y+TLI
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + A ++++ M NG P+ TYT L A + + G+ P+
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHN--- 94
TYTA++DG+ + + ++ + L + +E G P+ T + N
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCG 576
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G +P IT+ + I LC G+ A + M + P+ Y +LI L Q+
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQE 635
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M ++G P+ TY ++ EA + GL P+V TYT+ +DG C+ GR
Sbjct: 543 MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH----------------LHNVIDIGHIPRTITF 107
+ ++ +E +R PN+ T LI+ L + G P T+
Sbjct: 603 TGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTY 662
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ LCG G+ +A L+ M + G PS +Y L+
Sbjct: 663 TTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALL 701
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 30/162 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M ++G PN TYT + +A + + G P TY ++ GF K
Sbjct: 508 MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS 567
Query: 67 SNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNN 109
+E + +++G+ PNV+T H + + P T+++
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSS 627
Query: 110 VIQALCGVGKIDKALL--LLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC G+ + A + LL + +G P+ Y TL+K L
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-- 92
A +M + + N G++P + T+ +++ CK GR E +++ PN T L
Sbjct: 186 ARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLIL 245
Query: 93 -----HNV----------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
HN+ + G P ++T++ +I LC G++++A+ +L M + G P
Sbjct: 246 GHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305
Query: 138 S 138
+
Sbjct: 306 T 306
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + + +ARK++ M G PNV TY+ LEA E+L +K G+ PD
Sbjct: 259 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPD 318
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TY+A++ G CK + E ++L G TP+VV ++IH L
Sbjct: 319 AFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 378
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
+ P +T+N VI LC +GKI +A ++L M E G + P Y T+I L
Sbjct: 379 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGL 435
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYE-------MLMNVKNDGLKPDVYT 53
+CN D A ++++ M G+ P+ T+T I+ A + ++++ G P+V T
Sbjct: 122 FCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVT 181
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV----------I 96
YTA++ F + + E M+LL E ERG PN+VT L L V I
Sbjct: 182 YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 241
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +TFN+++ C G +D A LL +M G P+ Y LI L
Sbjct: 242 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 294
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+++ M + G PN+ TY +L A +++ + G P+V T+ +++
Sbjct: 197 EAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLV 256
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
DGFCK G ++ +LL + +G+ PNVVT LI L + G
Sbjct: 257 DGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVT 316
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T++ +I LC KI++A +L M G P +Y ++I
Sbjct: 317 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 361
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNG-YHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
C EA+ +++ M ++G P+V TY+ ++EA ++L + G PD
Sbjct: 400 CKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD 459
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT ++DG CK GR E LL G PNVV T+ +
Sbjct: 460 VVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVV------------------TYTTL 501
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC K+D+A ++ M G P+ Y+T++ L
Sbjct: 502 ISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGL 540
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNVIDI----- 98
+PDV +Y V+ GFC G + +ELL E G P+ T + + N D+
Sbjct: 109 EPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD 168
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+ +I A K+++A+ LL M E G P+ Y+ L+ L
Sbjct: 169 HLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDAL 224
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + + +ARK++ M G PNV TY+ LEA E+L +K G+ PD
Sbjct: 137 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPD 196
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TY+A++ G CK + E ++L G TP+VV ++IH L
Sbjct: 197 AFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 256
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
+ P +T+N VI LC +GKI +A ++L M E G + P Y T+I L
Sbjct: 257 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGL 313
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYE-------MLMNVKNDGLKPDVYTY 54
CN D A ++++ M G+ P+ T+T I+ A + ++++ G P+V TY
Sbjct: 1 CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTY 60
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV----------ID 97
TA++ F + + E M+LL E ERG PN+VT L L V I+
Sbjct: 61 TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE 120
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +TFN+++ C G +D A LL +M G P+ Y LI L
Sbjct: 121 GGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 172
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+++ M + G PN+ TY +L A +++ + G P+V T+ +++
Sbjct: 75 EAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLV 134
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
DGFCK G ++ +LL + +G+ PNVVT LI L + G
Sbjct: 135 DGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVT 194
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T++ +I LC KI++A +L M G P +Y ++I
Sbjct: 195 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 239
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNG-YHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
C EA+ ++D M ++G P+V TY+ ++EA ++L + G PD
Sbjct: 278 CKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT ++DG CK GR E LL G PNVV T+ +
Sbjct: 338 VVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVV------------------TYTTL 379
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC K+D+A ++ M G P+ Y+T++ L
Sbjct: 380 ISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGL 418
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +F +A + M NG P+V TYT L A E ++ GL+P+
Sbjct: 125 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNV------------ 95
TYT ++DGF + G NE +LNE E G +P+VVT IH H V
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 244
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P ++++ +I C G++D+A + M E G P Y +LI+ L
Sbjct: 245 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-------ILEAYEMLMNVKND----GLKPDVYTYTAVM 58
EA ++++ M ++G+ P+V TY +LE E + V + GL PDV +Y+ ++
Sbjct: 203 EAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTII 262
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
GFC+ G + ++ E +E+GV+P+ VT L ++D+G
Sbjct: 263 SGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLP 322
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+ +I A C G ++KAL L M G +P Y LI L++Q
Sbjct: 323 PDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQ 373
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + + M NG PNV TY L EA+ +L ++ + G++P+
Sbjct: 20 FCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPN 79
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+ +Y +++G C+ G E E+L E +G TP+ VT L N
Sbjct: 80 LISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHA 139
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G P +T+ +I ++C +++A+ M G P+ Y TLI +Q
Sbjct: 140 EMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQ 198
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 36/157 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY IL + ++ +G P+V TY ++D +CK+GR +E L
Sbjct: 8 PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67
Query: 74 LNEAIERGVTPNVVTLIHLHNVI------------------DIGH---IPRTITFNNVIQ 112
L +G+ PN+++ +NVI ++G+ P +T+N ++
Sbjct: 68 LKSMSSKGMQPNLIS----YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLN 123
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G +AL++ M +G PS Y LI +
Sbjct: 124 GYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSM 160
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
+ P+VYTY ++ GFC VG + + E G PNVV T
Sbjct: 6 VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVV------------------T 47
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I A C +G+ID+A LL M G P+ Y+ +I L
Sbjct: 48 YNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGL 90
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 44/174 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + D +A + D M G+ P+ TY++L EA +L + + P
Sbjct: 335 YCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPS 394
Query: 51 VYTY---------------TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV 95
TY A++ GFC G +E + +ER
Sbjct: 395 DVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVER--------------- 439
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
H P +N +I C G + KA L M G +P TLIK L
Sbjct: 440 ---NHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 490
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 77/161 (47%), Gaps = 32/161 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D EA V D M GY PNV TY L A+ M+ ++ + G+ P
Sbjct: 371 CKCGQID--EACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 428
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV TY+ ++D FCK R +E +ELL+ RG TPNVV TFN+
Sbjct: 429 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV------------------TFNS 470
Query: 110 VIQALCGVGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKKL 149
+I LC + +A + M +HG +P + Y TLI L
Sbjct: 471 IIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGL 511
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 76/161 (47%), Gaps = 32/161 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D EA V D M GY PNV TY +L A+ M+ ++ + G+ P
Sbjct: 865 CKCGQTD--EACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTP 922
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV TY+ ++D FCK +E +ELL+ RG TPNVV TFN+
Sbjct: 923 DVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVV------------------TFNS 964
Query: 110 VIQALCGVGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKKL 149
+I LC + +A + M +HG P + Y TLI L
Sbjct: 965 IIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGL 1005
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N+ ++ + + + G+HP+V TY L EA + ++ + P+V
Sbjct: 227 CKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNV 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTL----------------IHLH 93
TY+ +++G CKVGR +E EL+ E + V PN++T L
Sbjct: 287 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 346
Query: 94 NVIDIGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + P T+TF+ +I LC G+ID+A + M G +P+ Y+ L+ L
Sbjct: 347 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 405
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYT-----------ILEAYEMLMNVKNDGLK- 48
C EAR++I M PN+ TY + EA E++ ++++ L+
Sbjct: 791 CKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRV 850
Query: 49 -PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------------- 94
PD T++ ++DG CK G+++E + ++ I G PNVVT L N
Sbjct: 851 SPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHA 910
Query: 95 ----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P IT++ ++ A C +D+AL LL M G P+ ++++I L
Sbjct: 911 MIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLK- 48
C EAR++I M PN+ TY EA E++ ++++ L+
Sbjct: 297 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 356
Query: 49 -PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------------- 94
PD T++ ++DG CK G+ +E + ++ I G PNV+T L N
Sbjct: 357 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 416
Query: 95 ----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P IT++ ++ A C ++D+AL LL M G P+ ++++I L
Sbjct: 417 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 475
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F +A + + M P+V T+ L A ++L + N G+ P+V
Sbjct: 578 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNV 637
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY A++ G CK GR E + L E + G P+ +T L +
Sbjct: 638 VTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE 697
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T+T+N ++ L G+ ++A+ +L M G P Y+TLI L
Sbjct: 698 LKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSL 752
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 35/175 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK---PDVYTYT 55
+A V++ M G+HP+V TY L EA + ++ + + P+V TY+
Sbjct: 725 QAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYS 784
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTL----------------IHLHNVID 97
+++G CKVGR +E EL+ E + + V PN++T L +
Sbjct: 785 VLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLR 844
Query: 98 IGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + P T+TF+ +I LC G+ D+A + M G +P+ Y+ L+ L
Sbjct: 845 DGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGL 899
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 57/204 (27%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +I+ M D G P+V TY++L EA E+L + + G P+V
Sbjct: 900 CKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNV 959
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNE-AIERGVTPNVVT---LIH---------------- 91
T+ +++DG CK +S E ++ ++ ++ G+ P+ +T LI
Sbjct: 960 VTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLD 1019
Query: 92 --------------------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL 125
LH ++++ +P +TFN +I C G ++A
Sbjct: 1020 AMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASA 1079
Query: 126 LLFLMYEHGKIPSRTLYDTLIKKL 149
L M P + LI L
Sbjct: 1080 LFEEMVAKNLQPDVMTFGALIDGL 1103
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI----------- 90
DG+ P + TY +++G CK MEL E +ERG P+VV TLI
Sbjct: 210 DGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEE 269
Query: 91 --HLH-NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG--KIPSRTLYDTL 145
LH ++ +P +T++ +I LC VG+ID+A L+ M +P+ Y++
Sbjct: 270 ARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSF 329
Query: 146 IKKLDQQ 152
+ L +Q
Sbjct: 330 LDGLCKQ 336
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
L+ Y ++ ++ L PD T+ ++ G CK G + L E + + + P+V+T L
Sbjct: 552 LQVYNRMLELE---LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGAL 608
Query: 93 -------------HNVID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+++D +G P +T+N ++ LC G+I++A L M G
Sbjct: 609 IDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGC 668
Query: 136 IPSRTLYDTLIKKL 149
+P Y +L+ L
Sbjct: 669 VPDSITYGSLVYAL 682
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 31/175 (17%)
Query: 3 CNKNDFFEARKVIDYM-FDNGYHPNVTTY-TILEAY---------EMLMNVKNDGLKPDV 51
C + EA ++ D M +G P+ TY T+++ E L++ D PD
Sbjct: 476 CKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD---PDT 532
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
Y + ++G K+G + +++ N +E + P+ VT I + G+
Sbjct: 533 YAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEE 592
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF +I LC G+++ A +L LM G P+ Y+ L+ L
Sbjct: 593 MVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGL 647
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +F +A + M NG P+V TYT L A E ++ GL+P+
Sbjct: 329 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 388
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNV------------ 95
TYT ++DGF + G NE +LNE E G +P+VVT IH H V
Sbjct: 389 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 448
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P ++++ +I C G++D+A + M E G P Y +LI+ L
Sbjct: 449 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-------ILEAYEMLMNVKND----GLKPDVYTYTAVM 58
EA ++++ M ++G+ P+V TY +LE E + V + GL PDV +Y+ ++
Sbjct: 407 EAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTII 466
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
GFC+ G + ++ E +E+GV+P+ VT L ++D+G
Sbjct: 467 SGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLP 526
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+ +I A C G ++KAL L M G +P Y LI L++Q
Sbjct: 527 PDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQ 577
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA ++ M G PN+ +Y ++ EA+E+L + G PD
Sbjct: 259 YCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPD 318
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +++G+CK G ++ + + E + GV+P+VV T+ +
Sbjct: 319 EVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVV------------------TYTAL 360
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I ++C +++A+ M G P+ Y TLI +Q
Sbjct: 361 INSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQ 402
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 36/173 (20%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
A +V M + PNV TY IL + ++ +G P+V TY +
Sbjct: 196 LSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTL 255
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI------------------DIG 99
+D +CK+GR +E LL +G+ PN+++ +NVI ++G
Sbjct: 256 IDAYCKMGRIDEAFGLLKSMSSKGMQPNLIS----YNVIINGLCREGSMKEAWEILEEMG 311
Query: 100 H---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ P +T+N ++ C G +AL++ M +G PS Y LI +
Sbjct: 312 YKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSM 364
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-------------LEAYEMLMNVKNDGLK 48
Y + N +A I+ +G+ P V +Y L A E+ + +
Sbjct: 152 YSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVS 211
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P+VYTY ++ GFC VG + + E G PNVV T+N
Sbjct: 212 PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVV------------------TYN 253
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I A C +G+ID+A LL M G P+ Y+ +I L
Sbjct: 254 TLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGL 294
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 44/174 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + D +A + D M G+ P+ TY++L EA +L + + P
Sbjct: 539 YCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPS 598
Query: 51 VYTY---------------TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV 95
TY A++ GFC G +E + +ER
Sbjct: 599 DVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVER--------------- 643
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
H P +N +I C G + KA L M G +P TLIK L
Sbjct: 644 ---NHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 694
>gi|357506669|ref|XP_003623623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498638|gb|AES79841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 64/195 (32%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------------- 33
C+C+KN+ EA++V+ + +NG+ P+ T T+L
Sbjct: 155 CHCSKNELEEAKRVLFTVLENGFEPDSATITVLINSLCKRGKVKKAMEVFEFLERKGLKL 214
Query: 34 -------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
EA E+LM++K + DVY+Y+AVM+G CKVGRS+E MEL
Sbjct: 215 GVQAYNCLLRGLAYVGRVDEAVEILMDMKTGNIGVDVYSYSAVMNGLCKVGRSDEAMELF 274
Query: 75 NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+EA+ G+ P+VV TFN +I+ G+ + + +L +M EHG
Sbjct: 275 DEAVGVGLRPDVV------------------TFNALIEGYSREGREMEGVGVLKMMKEHG 316
Query: 135 KIPSRTLYDTLIKKL 149
+ Y T++ L
Sbjct: 317 CVADLINYKTVLHGL 331
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+E++ EA+ RG + L++L++++ G+ I F VI+ LCG G++D+A+ L L+
Sbjct: 399 VEVMVEALFRGEKFDE-ALVNLNDMVRWGYSLEGIAFEEVIEGLCGQGRVDEAVSTLLLL 457
Query: 131 YEHGKIPSRTLYDTLIKKLD 150
+G R + L+ +L+
Sbjct: 458 QANGGFLDRVSFGVLVNELN 477
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ N +A + D + G+ PNV TYT L A E+ + +G +P+
Sbjct: 163 YCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------------HLHN 94
V TY A++ G C++GR + LL + ++R + PNV+T L+N
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282
Query: 95 V-IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V I + P T+ ++I LC G +D+A + +LM +G P+ +Y TLI
Sbjct: 283 VMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI 335
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EAR++ M NG +PN YT L + ++ + G+ + TYT ++
Sbjct: 311 EARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------------- 104
G+C VGR + E+ N+ R P++ T + L + G + +
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMD 430
Query: 105 ---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+T+ +IQ +C +GK++ A L ++ G P+ Y T+I
Sbjct: 431 INIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 476
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNV 95
G +PD+ T+T++++G+C R + + L ++ + G PNVVT HL++
Sbjct: 148 GFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHA 207
Query: 96 IDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P +T+N ++ LC +G+ A LL M + P+ + LI
Sbjct: 208 VELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALI 265
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+++ + M +P+V TY L EA +M ++ +G P+ YT ++
Sbjct: 276 EAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI 335
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNVI---DIGH-----------I 101
GFCK R + M++ E ++GV N +T LI + ++ D+
Sbjct: 336 HGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAP 395
Query: 102 PRTITFNNVIQALCGVGKIDKALLLL 127
P T+N ++ LC GK++KAL++
Sbjct: 396 PDIRTYNVLLDGLCCNGKVEKALMIF 421
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + +YM N+ TYTI+ +A+++ ++ + G+KP+V
Sbjct: 409 CCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNV 468
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
TYT ++ GFC+ G +E L + E G PN
Sbjct: 469 ITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D R++ D M PNV TY+ L EA EML ++ G++PD
Sbjct: 230 FCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPD 289
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YT + DG CK GR+ + +++L+ +++G P T+T+N V
Sbjct: 290 VVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPG------------------TLTYNVV 331
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC ++D A ++ +M + GK P Y+TL+K L
Sbjct: 332 VNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGL 370
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y EA K+ Y ++G+ PN TY+++ A + +K+ G++P
Sbjct: 442 YLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPT 501
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID------------- 97
V Y A+M C+ + L E R V NV ++ + +ID
Sbjct: 502 VIDYNALMTSLCREDSLEQARSLFQEM--RNVNHNV-DVVSFNIIIDGTLKAGDVKSAKE 558
Query: 98 -------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +P +TF+ +I +G +D+A+ L M G +P ++D+L+K
Sbjct: 559 LLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLK 615
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 32/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C ++ +A V++ M G P+ TY L + +++L++ K +K
Sbjct: 336 CKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFH-VK 394
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------------- 92
PDV+T ++ G CK GR ++ + + +E G+ N+VT L
Sbjct: 395 PDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKL 454
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P ++T++ +I LC + + A L M + G P+ Y+ L+ L
Sbjct: 455 WKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSL 512
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
F + + F N +HP+ A+ +L + G +VY V+ GFC+ G+ +
Sbjct: 77 FTSLSALTESFVNTHHPSF-------AFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCD 129
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ M L ++ ++R ++ + +P +T+N ++ C ++ +A +L
Sbjct: 130 KAMSLFSQ-MKRN-----------YDCV----VPDCVTYNTLVNGFCKAKRLAEARVLFE 173
Query: 129 LMYEHGKI-PSRTLYDTLI 146
M + G P+ Y LI
Sbjct: 174 AMKKGGDCRPNLVTYSVLI 192
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + DF +A ++ D M + P V YTIL EA M ++N G+ P++
Sbjct: 204 CRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNL 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
YTY +MDG+CK+ + +EL E + G+ PNVVT L +
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLID 323
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P +N +I C G + +AL L + +H +P Y LIK L
Sbjct: 324 MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGL 378
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A ++ M +G PNV T+ IL A + L+++ + G+ P+
Sbjct: 273 YCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
++ Y ++DG+CK G +E + L +E + + P+V T LI L
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +P +T+N +I C G ++KA+ + M E G P+ + TLI
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + + + P+V TY+IL EA +L +K G P+
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++DG+CK G + +E+ ++ E+G+ PN+ ITF+ +
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNI------------------ITFSTL 444
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C GK++ A+ L M G +P Y LI
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY------EMLMNVKND----GLKPD 50
YC + + +A +V M + G PN+ T+ T+++ Y E M + + GL PD
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YTA++DG K G + E L E E G+ PNV TL + +
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL------------------SCL 514
Query: 111 IQALCGVGKIDKALLLLF 128
I LC G+I A+ L
Sbjct: 515 IDGLCKDGRISDAIKLFL 532
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G P+V TY ++DG C+ G + L +E IE+ + P VV L
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEA 247
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ + G +P T+N ++ C + + KAL L M G +P+ + LI
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDG 307
Query: 149 L 149
L
Sbjct: 308 L 308
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEM-------LMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
V+ + + + PNV I+ EM + K D L P + V+DG K GR
Sbjct: 115 VLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVL-PAMQACNMVLDGLVKKGR 173
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNN 109
+ + ++ + + RG +PNVVT L +I+ P + +
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I+ LCG +I +A + M G +P+ Y+T++
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMM 270
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+++ EA+K+ + M G PNV +Y IL EA +L + + L PD
Sbjct: 195 YCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPD 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
++TY+ +M GFC+VGR E ELL E G+ PN++T I L + GH+
Sbjct: 255 IFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLK 314
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + +I+ +C GK++ A L ++ G P+ Y +I L
Sbjct: 315 AMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGL 370
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + A +++ M + G PNV Y + EA + + +G+ PDV
Sbjct: 56 CKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDV 115
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+TY++++ GFC +GR NE L + +ER V PN VT L
Sbjct: 116 FTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFET 175
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P T+N ++ C ++D+A L +M G P+ Y+ LI
Sbjct: 176 MTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILI 227
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+K +A K+ D M G+ P+V TY+ + A ++L ++ G KP+V
Sbjct: 21 CSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNV 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGH---------- 100
Y ++D CK E M+ +E ++ G+ P+V T LH ++G
Sbjct: 81 VAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQ 140
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IP +TF +I LC I +A L+ M E G P Y+ L+
Sbjct: 141 MVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALV 192
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN EA + M + PN T+TIL EA+ + + GL+PD
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPD 184
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHN-----------VI 96
VYTY A++DG+C + +E +L N +G PNV + LI+ H +
Sbjct: 185 VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLA 244
Query: 97 DIGH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ H P T++ +++ C VG+ +A LL M +G +P+ Y ++ L
Sbjct: 245 EMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGL 300
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 28/160 (17%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
MF G P + T+ I++A ++ + G +PDV TY+ +++G CK+G
Sbjct: 1 MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60
Query: 67 SNEVMELLNEAIERGVTPNVV---TLI--------------HLHNVIDIGHIPRTITFNN 109
+ ++LL + E+G PNVV T+I ++ G P T+++
Sbjct: 61 TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ C +G++++A L M E IP++ + LI L
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGL 160
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA++++ M G PN+ TY+I+ EA+E+L ++ ++P+
Sbjct: 265 FCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPN 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
++ YT +++G C G+ EL + +G+ P VVT L
Sbjct: 325 IFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFR 384
Query: 95 VIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ + G +P + T+N +IQ G A+ L+ M G
Sbjct: 385 EMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKG 425
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C AR++ +F G P V TYT++ EA E+ + +G P+
Sbjct: 336 CTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNS 395
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV 95
TY ++ GF + G + + L+ E + +G + + T L ++
Sbjct: 396 CTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDL 439
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + DF +A ++ D M + P V YTIL EA M ++N G+ P++
Sbjct: 204 CRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNL 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
YTY +MDG+CK+ + +EL E + G+ PNVVT L +
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLID 323
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P +N +I C G + +AL L + +H +P Y LIK L
Sbjct: 324 MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGL 378
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A ++ M +G PNV T+ IL A + L+++ + G+ P+
Sbjct: 273 YCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
++ Y ++DG+CK G +E + L +E + + P+V T LI L
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +P +T+N +I C G ++KA+ + M E G P+ + TLI
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + + + P+V TY+IL EA +L +K G P+
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++DG+CK G + +E+ ++ E+G+ PN+ ITF+ +
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNI------------------ITFSTL 444
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C GK++ A+ L M G +P Y LI
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY------EMLMNVKND----GLKPD 50
YC + + +A +V M + G PN+ T+ T+++ Y E M + + GL PD
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YTA++DG K G + E L E E G+ PNV TL + +
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL------------------SCL 514
Query: 111 IQALCGVGKIDKALLLLF 128
I LC G+I A+ L
Sbjct: 515 IDGLCKDGRISDAIKLFL 532
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G P+V TY ++DG C+ G + L +E IE+ + P VV L
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEA 247
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ + G +P T+N ++ C + + KAL L M G +P+ + LI
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDG 307
Query: 149 L 149
L
Sbjct: 308 L 308
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEM-------LMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
V+ + + + PNV I+ EM + K D L P + V+DG K GR
Sbjct: 115 VLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVL-PAMQACNMVLDGLVKKGR 173
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNN 109
+ + ++ + + RG +PNVVT L +I+ P + +
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I+ LCG +I +A + M G +P+ Y+T++
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMM 270
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 63/207 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C +N EARK ++ M + PNV TYT+L
Sbjct: 57 CVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV 116
Query: 34 ----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
EAY++L + G PD++TYT ++ GFCK +S++ + + +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 176
Query: 78 IERGVTPNVVT---LI-------HLHNVIDI--------GHIPRTITFNNVIQALCGVGK 119
+ RG P+VVT LI L ID+ +P T+T+N++I C +GK
Sbjct: 177 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D+A+ LL M E G P Y TL+
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLM 263
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 34/181 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +++ M + G P+V TYT L +AY++L + GL PD
Sbjct: 231 FCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPD 290
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V T+T++MDG C+ R ++ + +L E + +P V T +N I G+
Sbjct: 291 VVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT----YNTILDGYCRANQLEEAR 346
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P ++FN +I+ LC V + +A+ L+ P +Y T+I L +
Sbjct: 347 KFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCR 406
Query: 152 Q 152
+
Sbjct: 407 E 407
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKP 49
+C +A +V + + G+ P+V TY+ L EA ++ +K+ P
Sbjct: 160 FCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMP 219
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI- 98
+ TY +++ GFC++G+ +E M LL E G +P+VVT L L + D+
Sbjct: 220 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 279
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +TF +++ LC ++ A+ +L M P+ Y+T++
Sbjct: 280 NQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTIL 333
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGY-HPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + EA + M +G PN TY L EA +L + G PD
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDIGHI-- 101
V TYT +M+GFCK+ R ++ +LLN+ +G+TP+VVT L + + D HI
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N ++ C ++++A F++ E P+ ++ +I+ L
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEA--RKFMLEEMDCPPNVVSFNIMIRGL 369
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 30/155 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G+HP+V TYT + EA + L + N L P+V
Sbjct: 22 CKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNV 81
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DG CK GR +E + LL++ ++ V P +T+N++I
Sbjct: 82 VTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-------------------PTAVTYNSLI 122
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC + +A LL M G IP Y TLI
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLI 157
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY---EMLMNVKNDGLK-----PDVYT 53
C +N +A ++ M P V TY TIL+ Y L + L+ P+V +
Sbjct: 302 CRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVS 361
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV------------------TLIHLHNV 95
+ ++ G CKV RS+E MEL+ EA R P+VV ++ +
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML 421
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +P +IT++ ++ LC G +D+A + E G +P+ Y+ LI
Sbjct: 422 EEPGCLPNSITYSTLVTGLCNAGMLDRARGYI----EKGCVPNIGTYNLLI 468
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH------- 91
V + D TYT+++ G CKV R + + L + + +G P+V T +IH
Sbjct: 2 VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61
Query: 92 -------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
L + + P +T+ +I LC G++D+A+ LL M + +P+ Y++
Sbjct: 62 LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKC-VPTAVTYNS 120
Query: 145 LIKKL 149
LI L
Sbjct: 121 LISGL 125
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTILEA----YEMLMNVKN---DGLKPDVYTY 54
C + EA +V M + G PN TY+ L ML + G P++ TY
Sbjct: 405 CREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKGCVPNIGTY 464
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERG 81
++D F K R + ELL++ ++RG
Sbjct: 465 NLLIDAFRKANRDEDARELLDDMVQRG 491
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 63/207 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C +N EARK ++ M + PNV TYT+L
Sbjct: 57 CVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV 116
Query: 34 ----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
EAY++L + G PD++TYT ++ GFCK +S++ + + +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 176
Query: 78 IERGVTPNVVT---LI-------HLHNVIDI--------GHIPRTITFNNVIQALCGVGK 119
+ RG P+VVT LI L ID+ +P T+T+N++I C +GK
Sbjct: 177 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D+A+ LL M E G P Y TL+
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLM 263
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 34/181 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +++ M + G P+V TYT L +AY++L + GL PD
Sbjct: 231 FCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPD 290
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V T+T++MDG C+ R ++ + +L E + +P V T +N I G+
Sbjct: 291 VVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT----YNTILDGYCRANQLEEAR 346
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P ++FN +I+ LC V + +A+ L+ P +Y T+I L +
Sbjct: 347 KFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCR 406
Query: 152 Q 152
+
Sbjct: 407 E 407
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKP 49
+C +A +V + + G+ P+V TY+ L EA ++ +K+ P
Sbjct: 160 FCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMP 219
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI- 98
+ TY +++ GFC++G+ +E M LL E G +P+VVT L L + D+
Sbjct: 220 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 279
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +TF +++ LC ++ A+ +L M P+ Y+T++
Sbjct: 280 NQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTIL 333
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGY-HPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + EA + M +G PN TY L EA +L + G PD
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDIGHI-- 101
V TYT +M+GFCK+ R ++ +LLN+ +G+TP+VVT L + + D HI
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N ++ C ++++A F++ E P+ ++ +I+ L
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEA--RKFMLEEMDCPPNVVSFNIMIRGL 369
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 30/155 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G+HP+V TYT + EA + L + N L P+V
Sbjct: 22 CKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNV 81
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DG CK GR +E + LL++ ++ V P +T+N++I
Sbjct: 82 VTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-------------------PTAVTYNSLI 122
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC + +A LL M G IP Y TLI
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLI 157
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY---EMLMNVKNDGLK-----PDVYT 53
C +N +A ++ M P V TY TIL+ Y L + L+ P+V +
Sbjct: 302 CRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVS 361
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV------------------TLIHLHNV 95
+ ++ G CKV RS+E MEL+ EA R P+VV ++ +
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML 421
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +P +IT++ +I LC G +D+A + E G +P+ Y+ LI
Sbjct: 422 EEPGCLPNSITYSTLITGLCNAGMLDRARGYI----EKGCVPNIGTYNLLI 468
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH------- 91
V + D TYT+++ G CKV R + + L + + +G P+V T +IH
Sbjct: 2 VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61
Query: 92 -------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
L + + P +T+ +I LC G++D+A+ LL M + +P+ Y++
Sbjct: 62 LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKC-VPTAVTYNS 120
Query: 145 LIKKL 149
LI L
Sbjct: 121 LISGL 125
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTILEA----YEMLMNVKN---DGLKPDVYTY 54
C + EA +V M + G PN TY+ L ML + G P++ TY
Sbjct: 405 CREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEKGCVPNIGTY 464
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERG 81
++D F K R + ELL++ ++RG
Sbjct: 465 NLLIDAFRKANRDEDARELLDDMVQRG 491
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 33/172 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPDVYTYTAVM 58
+A ++++ M DNG+ PNV +Y T+L + V+N G PDV +YT V+
Sbjct: 62 DAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVI 121
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
+G CK+ + +E ++++ I+RG PNV+T L + + G+
Sbjct: 122 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 181
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS-----RTLYDTLIKK 148
P IT+NN++ LC K+D AL L M E G P T+ D+L+K
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKS 233
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++++ M G PNV TY+ L EA +L + G P++ TY ++
Sbjct: 238 DACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 297
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHI 101
DG CK+GR +E LL E ++ G PNVVT L + +++ G++
Sbjct: 298 DGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYV 357
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N+++ C ++++A LL M + G +P+ Y+T+I L
Sbjct: 358 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDG-LKP 49
+C D A +++ M + GY PN TY + A ++ ++ G P
Sbjct: 159 FCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPP 218
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DV+TY+ ++D K G+ ++ L+ + +G +PNVVT L+H L
Sbjct: 219 DVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALL 278
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+N +I C +G+ID+A LL M + G P+ Y L+
Sbjct: 279 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLL 332
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K+ M +G P+ TY+I+ EA +L + +G P
Sbjct: 512 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGA 571
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
TY ++DGFCK G ++ +E+L + +G P+VVT L
Sbjct: 572 ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 631
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P T+T+N +++ C + + A+ L +M + G P Y TL+ L
Sbjct: 632 MLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 686
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K++ A +++ M G PNV +Y + E +L + ++ PD
Sbjct: 370 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------------L 92
+ T+ ++D CK R + EL N E G TPN+VT L+H
Sbjct: 430 IVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLR 489
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P IT+N VI LC ++D+A L M G P Y +I L
Sbjct: 490 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSL 546
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A +L + ++G P+V++Y V+ GFCK R + LL + + RG P+VV+ +
Sbjct: 62 DAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVI 121
Query: 94 N-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N +I G P IT+ ++ C VG +D A+ L+ M E G
Sbjct: 122 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 181
Query: 137 PSRTLYDTLIKKL 149
P+ Y+ ++ L
Sbjct: 182 PNAITYNNIMHGL 194
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 29/171 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN--VKNDGLKPDVYTYTAVM 58
A ++ + + ++G PN+ TY L + E L+ + G PD+ TY V+
Sbjct: 449 AYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVI 508
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI----GHI 101
DG CK R + +L + + G+ P+ VT + +NV+++ G
Sbjct: 509 DGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFD 568
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P IT+ +I C G +DKAL +L L+ G P + I L ++
Sbjct: 569 PGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 619
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C K + +A +++ M + GY PN+ TY L A ++L ++ G P
Sbjct: 336 CKCGKAE--DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVP 393
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V +Y V+ G CK + +E + LL + + P++V TFN
Sbjct: 394 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIV------------------TFNT 435
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I A+C ++D A L L+ E G P+ Y++L+ L
Sbjct: 436 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 475
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------- 91
PD TY +++G K R ++ + LL E ++ G PNV T++H
Sbjct: 42 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L ++ G P +++ VI LC + ++D+A ++ M + G P+ Y TL+
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 156
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +++ + G +P+V T++I +A E+L + GL PD
Sbjct: 581 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPD 640
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ GFC R+ + ++L + G P+ T L +GH+ ++ ++
Sbjct: 641 TVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTL-----VGHLVDKKSYKDL 695
Query: 111 I 111
+
Sbjct: 696 L 696
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + DF +A ++ D M + P V YTIL EA M ++N G+ P++
Sbjct: 204 CRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNL 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
YTY +MDG+CK+ + +EL E + G+ PNVVT L +
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLID 323
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P +N +I C G + +AL L + +H +P Y LIK L
Sbjct: 324 MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGL 378
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A ++ M +G PNV T+ IL A + L+++ + G+ P+
Sbjct: 273 YCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
++ Y ++DG+CK G +E + L +E + + P+V T LI L
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +P +T+N +I C G ++KA+ + M E G P+ + TLI
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + + + P+V TY+IL EA +L +K G P+
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++DG+CK G + +E+ ++ E+G+ PN+ ITF+ +
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNI------------------ITFSTL 444
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C GK++ A+ L M G +P Y LI
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY------EMLMNVKND----GLKPD 50
YC + + +A +V M + G PN+ T+ T+++ Y E M + + GL PD
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YTA++DG K G + E L E E G+ PNV TL + +
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL------------------SCL 514
Query: 111 IQALCGVGKIDKALLLLF 128
I LC G+I A+ L
Sbjct: 515 IDGLCKDGRISDAIKLFL 532
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G P+V TY ++DG C+ G + L +E IE+ + P VV L
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEA 247
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ + G +P T+N ++ C + + KAL L M G +P+ + LI
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDG 307
Query: 149 L 149
L
Sbjct: 308 L 308
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEM-------LMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
V+ + + + PNV I+ EM + K D L P + V+DG K GR
Sbjct: 115 VLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVL-PAMQACNMVLDGLVKKGR 173
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNN 109
+ + ++ + + RG +PNVVT L +I+ P + +
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I+ LCG +I +A + M G +P+ Y+T++
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMM 270
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 28/162 (17%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
K+ D M P+ TYT ++EA ++ + + GLKPD TYTA++DG+
Sbjct: 378 KLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGY 437
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRT 104
CK G E L N+ +E+G+TPNVVT LH + + G P
Sbjct: 438 CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNV 497
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N +I LC VG I++A+ L+ M G P Y T++
Sbjct: 498 CTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIM 539
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
YC + EA + + M + G PNV TYT L A E+L + GL+P+
Sbjct: 437 YCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPN 496
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
V TY A+++G CKVG + ++L+ E G P+ +T + +
Sbjct: 497 VCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLR 556
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++D G P +TFN ++ C G ++ L+ M + G +P+ T +++L+K+
Sbjct: 557 IMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQ 611
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 30/175 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D A +++ M + G PNV TY L +A +++ + G P
Sbjct: 473 CKCGEVDI--ANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFP 530
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
D TYT +MD +CK+G + ELL +++G+ P +VT L N
Sbjct: 531 DTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLI 590
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D G +P TFN++++ C + + + M+ G +P Y+ LIK
Sbjct: 591 KWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIK 645
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEA-----------YEMLMNVKNDGLKPDV 51
C EA +V+ M + P+ YT L + Y++ +K + PD
Sbjct: 333 CKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDF 392
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN- 94
TYT+++ G C+ G+ E +L +E + +G+ P+ VT LHN
Sbjct: 393 VTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQ 452
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G P +T+ ++ LC G++D A LL M E G P+ Y+ LI L
Sbjct: 453 MVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGL 507
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A K+++ M G+ P+ TYT + +A+E+L + + GL+P +
Sbjct: 508 CKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTI 567
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI--- 98
T+ +M+GFC G + L+ +++G+ PN T L I+I
Sbjct: 568 VTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKG 627
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G +P T T+N +I+ C + +A L M E G + Y++LIK
Sbjct: 628 MHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIK 680
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA+ +L+ ++ G PDV +Y+ ++DG+C+V + +V++L+ E +G+ PN
Sbjct: 268 VKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPN------ 321
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N++I LC G++ +A +L +M P +Y TLI
Sbjct: 322 ------------QYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLI 364
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C + ++I +M D G PN TT+ ++++ Y E+ + G+ PD
Sbjct: 577 FCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPD 636
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ G CK E L E +E+G + ++N++
Sbjct: 637 TNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAA------------------SYNSL 678
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I+ K ++A L M HG I + +YD +
Sbjct: 679 IKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFV 714
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K EA +V+ M DNG+ P+V TY L +A +L ++K GL PD
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V +Y+ V+ GFC+ +E + + E +E+G+ P+ +T L
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
++ +G P T+ +I A C G ++KAL L M E G +P Y LI L++Q
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + D M G PNV TY L + +++L ++ GL+P+
Sbjct: 215 FCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPN 274
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y V++G C+ GR EV +L E RG + + VT L+
Sbjct: 275 LISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA 334
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G P IT+ ++I ++C G +++A+ L M G P+ Y TL+ Q+
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A + +D M G PN TYT L EAY +L + ++G P V
Sbjct: 356 CKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY A+++G C G+ + + +L + E+G++P+VV +++ V+
Sbjct: 416 VTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV------------------SYSTVL 457
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C +D+AL + M E G P Y +LI+ +Q
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D EA +V M + G P+ TY+ L EA ++ + GL PD
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYTA+++ +C G + ++L NE +E+GV P+VV T++ +
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV------------------TYSVL 561
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I L + +A LL ++ +PS Y TLI+
Sbjct: 562 INGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E V+ M GY + TY L +A M + GL P V
Sbjct: 286 CREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSV 345
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LHN 94
TYT+++ CK G N ME L++ RG+ PN TL+ L
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ D G P +T+N +I C GK++ A+ +L M E G P Y T++
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 36/178 (20%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
+K + A V M ++ PNV TY IL A + ++ G P+V
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI---------------- 96
TY ++DG+CK+ + ++ +LL +G+ PN+++ +NV+
Sbjct: 242 TYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLIS----YNVVINGLCREGRMKEVSFV 297
Query: 97 -----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ +T+N +I+ C G +AL++ M HG PS Y +LI +
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSM 355
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N +A ++D M + GY P++ Y + +A + + G++P+
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPN 224
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VIDIGHI-- 101
V TYTA+++G C GR N+ LL + I+R +TPNV+T L + V++ I
Sbjct: 225 VVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFE 284
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++++I LC +ID+A + LM G P Y+TLI
Sbjct: 285 EMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLI 337
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + +A +++ M PNV TY+ +LEA E+ + + PD+
Sbjct: 236 CNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDI 295
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY+++++G C R +E ++ + + +G P+VV TLI+
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRK 355
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + T+T+N +IQ VG +DKA M G P Y+ L+ L
Sbjct: 356 MSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGL 410
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ D M G P+V +Y L + ++ + GL +
Sbjct: 306 CLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNT 365
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
TY ++ GF +VG ++ E ++ GV+P++ T I L + D G + +
Sbjct: 366 VTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFED 425
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ VIQ +C GK++ A L + G P Y T++ L
Sbjct: 426 MQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGL 480
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G++ D+YT+ V++ FC + + + +L + ++ G P+ VT+ L N
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+++IG+ P + +N +I +LC +++ AL + G P+ Y L+
Sbjct: 175 VSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNG 234
Query: 149 L 149
L
Sbjct: 235 L 235
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHNVIDI 98
G +PD T ++++GFC+ R ++ + L+++ +E G P++V +L V D
Sbjct: 150 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDA 209
Query: 99 ----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+ ++ LC G+ + A LL M + P+ Y L+
Sbjct: 210 LDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALL 267
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
T + +A+ + ++ GLKPD+ TYT +M G C G +EV L + + G+ N
Sbjct: 448 TGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKN 504
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++++ M G PNV TY+ L EA +L + G P++ TY ++
Sbjct: 966 DACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 1025
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHI 101
DG CK+GR +E LL E ++ G PNVVT L + +++ G++
Sbjct: 1026 DGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYV 1085
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N+++ C ++++A LL M + G +P+ Y+T+I L
Sbjct: 1086 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +++ M D G PNV TYT+L +A ++ + G P+
Sbjct: 1028 HCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPN 1087
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV------------TLIH-----LH 93
++TY +++D FCK +LL+ I++G PNVV T +H L
Sbjct: 1088 LFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLE 1147
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +P +TFN +I A+C ++D A L L+ E G P+ Y++L+ L
Sbjct: 1148 QMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 1203
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPDVYTYTAVM 58
+A ++++ M DNG+ PNV +Y T+L + V+N G PDV +YT V+
Sbjct: 248 DAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVI 307
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
+G CK+ + +E ++++ I+RG PNV+T L + + G+
Sbjct: 308 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 367
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+NN++ C +++A +L +M + G P Y T+I
Sbjct: 368 PNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTII 412
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + D M G P+V TY+I+ A++ML +K PDV
Sbjct: 521 CKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDV 580
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI--- 101
TY+A+++G CK G ++ ++ E + G PN+VT L ++ V +
Sbjct: 581 VTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEI 640
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +IT+ +I LC ++++A +L M + G +P R Y TL++ L +
Sbjct: 641 MRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQK 697
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N A +++ M G P+V +YT + EA ++ + G +P+
Sbjct: 275 FCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPN 334
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY ++DGFC+VG + +EL+ + ERG PN +T ++H L
Sbjct: 335 VITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQ 394
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P I ++ +I C GK+ +A LL M G P TLI L
Sbjct: 395 MMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDAL 450
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K++ A +++ M G PNV +Y + E +L + ++ PD
Sbjct: 1098 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 1157
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+ T+ ++D CK R + EL N E G TPN+VT L+H L
Sbjct: 1158 IVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLR 1217
Query: 94 NVI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P IT+N VI LC ++D+A L M G P Y +I L
Sbjct: 1218 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSL 1274
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K+ M +G P+ TY+I+ EA +L + +G P
Sbjct: 1240 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGA 1299
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
TY ++DGFCK G ++ +E+L + +G P+VVT L
Sbjct: 1300 ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 1359
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P T+T+N +++ C + A+ L +M + G P Y TL+ L
Sbjct: 1360 MLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 1414
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +ND A +V+ M G P+ Y+ + EA+++L + G +PD
Sbjct: 380 FCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPD 439
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V + ++D CK + ELL +I P+VV LIH L
Sbjct: 440 VACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLD 499
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P +T+N+V+ LC +I+ A LL M G +P Y +I
Sbjct: 500 VMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVI 552
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-LKPD 50
C D A +++ M +G NV + ++ A E+ ++ G PD
Sbjct: 888 CRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPD 947
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V+TY+ ++D K G+ ++ L+ + + +G +PNVVT L+H L
Sbjct: 948 VFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQ 1007
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+N +I C +G+ID+A LL M + G P+ Y L+
Sbjct: 1008 RMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLL 1060
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 29/171 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN--VKNDGLKPDVYTYTAVM 58
A ++ + + ++G PN+ TY L + E L+ + G PD+ TY V+
Sbjct: 1177 AYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVI 1236
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI----GHI 101
DG CK R + +L + + G+ P+ VT + +NV+++ G
Sbjct: 1237 DGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFD 1296
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P IT+ +I C G +DKAL +L L+ G P + I L ++
Sbjct: 1297 PGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 1347
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V Y+IL EA L + + PDV TY +V+DG CK R N+ L
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLL 532
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
+ GV P+VVT +IH L + + +P +T++ +I LC
Sbjct: 533 FDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCK 592
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +DKA + M G P+ Y+TLI L
Sbjct: 593 AGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGL 625
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------- 91
PD TY +++G K R ++ + LL E ++ G PNV T++H
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L ++ G P +++ VI LC + ++D+A ++ M + G P+ Y TL+
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 342
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 23/104 (22%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P+++T+T ++ G C+ G ELL E GV NV+ LHNV
Sbjct: 875 PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVI----LHNV------------- 917
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPS-----RTLYDTLIK 147
VI+ LC K+D AL L M E G P T+ D+L+K
Sbjct: 918 -VIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVK 960
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---T 88
IL AYE+ + GLK + +++ G C G+ ++ + E + + P+ V T
Sbjct: 177 ILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFRE-MSKTCPPDSVTYNT 235
Query: 89 LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+I+ L ++D G P ++N V+ C +++ AL LL M G
Sbjct: 236 MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRG 295
Query: 135 KIPSRTLYDTLIK---KLDQ 151
P Y T+I KLDQ
Sbjct: 296 CPPDVVSYTTVINGLCKLDQ 315
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +++ + G +P+V T++I +A E+L + GL PD
Sbjct: 1309 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPD 1368
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ GFC + + ++L + G P+ T L +GH+ ++ ++
Sbjct: 1369 TVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTL-----VGHLVDKKSYKDL 1423
Query: 111 I 111
+
Sbjct: 1424 L 1424
Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHI------- 101
D TY+ ++ GF + G+ EL +E +G+ + V L + D G
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF 219
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P ++T+N +I L ++D A+ LL M ++G P+ Y+T++
Sbjct: 220 REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 272
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 42/187 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A +V+D M +P+V TYTIL +A ++L +++ G PDV
Sbjct: 215 CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDV 274
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G CK GR +E ++ LN+ G PNV+T HN+I
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT----HNIILRSMCSTGRWMDAEK 330
Query: 97 ---DI---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---- 146
D+ G P +TFN +I LC G + +A+ +L M +HG P+ Y+ L+
Sbjct: 331 LLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFC 390
Query: 147 --KKLDQ 151
KK+D+
Sbjct: 391 KEKKMDR 397
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + ++ M G +P++ TY + +A E+L + + G P
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG K G++ + ++LL+E + + P+ +T L H
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G P +TFN+++ LC + D+A+ L M G P+ T Y LI+ L
Sbjct: 509 EFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGL 564
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C +A K+++ + +G P+V TY ++ E L + + PDV T
Sbjct: 147 FCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVT 206
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
Y ++ C G+ + ME+L+ ++R P+V+T LI L +
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMR 266
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G P +T+N ++ +C G++D+A+ L M G P+ ++ +++ +
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K A +++ M +G PN +Y L A E L + + G PD+
Sbjct: 355 CRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDI 414
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ CK G+ + +E+LN+ +G +P + IT+N VI
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL------------------ITYNTVI 456
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
L GK KA+ LL M P Y +L+ L ++
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 27 VTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
V T + E ++ L N+ G PD+ T ++ GFC++G++ + ++L G P+V
Sbjct: 113 VRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDV 172
Query: 87 VTLIHLHNVIDIGHI------------------PRTITFNNVIQALCGVGKIDKALLLLF 128
+T +NV+ G+ P +T+N ++++LC GK+ +A+ +L
Sbjct: 173 IT----YNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 129 LMYEHGKIPSRTLYDTLIK 147
M + P Y LI+
Sbjct: 229 RMLQRDCYPDVITYTILIE 247
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN T+ + A + L+ + N G KP +YT +++G G + E
Sbjct: 514 GVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEA 573
Query: 71 MELLNEAIERGV 82
+ELLNE +G+
Sbjct: 574 LELLNELCNKGL 585
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCN +F +A + M NG PNV TYT L A E L +++ GL P+
Sbjct: 318 YCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPN 377
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TYT ++DGF + G + +++ E +E G TP ++T LI+ L
Sbjct: 378 GRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQ 437
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I+ G IP ++++ +I C +++KA L M G P Y +LI+ L +Q
Sbjct: 438 EMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQ 496
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E ++++ M Y P+ T+ L +A + + +GL P+V
Sbjct: 284 CREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNV 343
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LHN 94
TYT +++ CK G N ME L++ +RG+ PN TLI +
Sbjct: 344 VTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKE 403
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G P IT+N +I C +G+++ A LL M E G IP Y T+I
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIIS 456
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M NG PNV TY + EA+++L + GL P++ +Y V++G C+ G+
Sbjct: 229 MERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQ 288
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNN 109
E E+L E +R P+ VT L N ++ G P +T+
Sbjct: 289 MKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTT 348
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I ++C G +++A+ L M + G P+ Y TLI QQ
Sbjct: 349 LINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ M + G+ P+V +Y+ + +A+++ + + G+ PDV TY++++
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G CK R EV +L E + G+ P+ +T+ ++I A C G
Sbjct: 491 QGLCKQRRLGEVCDLFQEMLSLGLPPD------------------EVTYTSLINAYCIEG 532
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
+DKAL L M + G P Y+ LI ++Q
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 36/171 (21%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----EAYEMLMNV------KNDGLKPDVYTYTAVMD 59
A + M ++G PNV TY IL A + M + + +G P+V TY ++D
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIID 246
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG-------------------- 99
+CK+ + E +LL +G+ PN+++ +NV+ G
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLIS----YNVVINGLCREGQMKETSEILEEMSKR 302
Query: 100 -HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++P +TFN +I C VG +AL+L M ++G P+ Y TLI +
Sbjct: 303 RYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSM 353
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
C KN +++ K +FD I +A ++ K+ G P V +Y A++D
Sbjct: 120 CLKNSYYQC-KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVI 178
Query: 63 KVGRSNEVME-LLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRT 104
+ +S ++ E + E +E GV+PNV T L + G +P
Sbjct: 179 RTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNV 238
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+N +I A C + KI +A LL LM G P+ Y+ +I L
Sbjct: 239 VTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGL 283
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 35/169 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAY-----------EMLMNVKNDGLKPDVYTYTAV 57
+A +++ G+ P V +Y IL+A + + G+ P+VYTY +
Sbjct: 150 KALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNIL 209
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------------- 98
+ GFC G + E G PNVVT + +ID
Sbjct: 210 IRGFCTAGNLEMGLFFFGEMERNGCLPNVVT---YNTIIDAYCKLRKIGEAFKLLRLMAL 266
Query: 99 -GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P I++N VI LC G++ + +L M + +P R ++TLI
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLI 315
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 14/155 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E + M G P+ TYT L +A + + G PD+
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDI 553
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++GF K R+ E LL + + PN +T + +ID + + ++
Sbjct: 554 VTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT---YNTLIDNCNNLEFKSALALM 610
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ C G +++A +L M + G + +Y+ +I
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVII 645
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCN +F +A + M NG PNV TYT L A E L +++ GL P+
Sbjct: 318 YCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPN 377
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TYT ++DGF + G + +++ E +E G TP ++T LI+ L
Sbjct: 378 GRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQ 437
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I+ G IP ++++ +I C +++KA L M G P Y +LI+ L +Q
Sbjct: 438 EMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQ 496
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E ++++ M Y P+ T+ L +A + + +GL P+V
Sbjct: 284 CREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNV 343
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LHN 94
TYT +++ CK G N ME L++ +RG+ PN TLI +
Sbjct: 344 VTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKE 403
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G P IT+N +I C +G+++ A LL M E G IP Y T+I
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIIS 456
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + M NG PNV TY + EA+++L + GL P+
Sbjct: 213 FCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPN 272
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+ +Y V++G C+ G+ E E+L E +R P+ VT L N
Sbjct: 273 LISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHA 332
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G P +T+ +I ++C G +++A+ L M + G P+ Y TLI QQ
Sbjct: 333 EMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 30/166 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ M + G+ P+V +Y+ + +A+++ + + G+ PDV TY++++
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHI 101
G CK R EV +L E + G+ P+ VT L N +I G
Sbjct: 491 QGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS 550
Query: 102 PRTITFNNVIQALCGVGKIDKA-LLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N +I + +A LLL L+YE +P+ Y+TLI
Sbjct: 551 PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEES-VPNEITYNTLI 595
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
C KN +++ K +FD I +A ++ K+ G P V +Y A++D
Sbjct: 120 CLKNSYYQC-KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVI 178
Query: 63 KVGRSNEVME-LLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRT 104
+ +S ++ E + E +E GV+PNV T L + G +P
Sbjct: 179 RTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNV 238
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+N +I A C + KI +A LL LM G P+ Y+ +I L
Sbjct: 239 VTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGL 283
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 35/169 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAY-----------EMLMNVKNDGLKPDVYTYTAV 57
+A +++ G+ P V +Y IL+A + + G+ P+VYTY +
Sbjct: 150 KALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNIL 209
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------------- 98
+ GFC G + E G PNVVT + +ID
Sbjct: 210 IRGFCTAGNLEMGLXFFGEMERNGCLPNVVT---YNTIIDAYCKLRKIGEAFKLLRLMAL 266
Query: 99 -GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P I++N VI LC G++ + +L M + +P R ++TLI
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLI 315
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 14/155 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E + M G P+ TYT L +A + + G PD+
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDI 553
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++GF K R+ E LL + + PN +T + +ID + + ++
Sbjct: 554 VTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT---YNTLIDNCNNLEFKSALALM 610
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ C G +++A +L M + G + +Y+ +I
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVII 645
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ + +A K++D M D G P++ TY ++ +A E L N+ + G +P+
Sbjct: 204 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y V+ G C R + EL+ E ++G PNVVT L L
Sbjct: 264 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 323
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P ++++N ++ A C K+DKA+ L LM G P Y+TL+ L
Sbjct: 324 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 378
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +D M G +P++ +Y L A E+L +K+ G P
Sbjct: 343 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 402
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y V+DG K G++ E +ELLNE + +G+ P+++T +
Sbjct: 403 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 462
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D+G P T+ +N +I LC + A+ L M +G +P+ + Y LI+ L
Sbjct: 463 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 518
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------L 89
++PD YTY ++ G C GR+ + +L+E + R P+VVT +
Sbjct: 154 VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 213
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L + D G P +T+N V+ +C G++D A+ L + +G P+ Y+ ++K L
Sbjct: 214 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 273
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D EA V D M GY PNV TY L A+ M+ ++ + G+ P
Sbjct: 192 CKCGQID--EACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 249
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV TY+ ++D FCK R +E +ELL+ RG TPNV+ +P +TFN
Sbjct: 250 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVL-------------VPDKVTFNI 296
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I C G ++A L M P + LI L
Sbjct: 297 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 336
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ND ++ + + + G+HP+V TY L EA + ++ + G P+V
Sbjct: 48 CKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNV 107
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTL----------------IHLH 93
TY+ +++G CKVGR +E EL+ E + V PN++T L
Sbjct: 108 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 167
Query: 94 NVIDIGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + P T+TF+ +I LC G+ID+A + M G +P+ Y+ L+ L
Sbjct: 168 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 226
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 37/181 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLK- 48
C EAR++I M PN+ TY EA E++ ++++ L+
Sbjct: 118 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 177
Query: 49 -PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------------- 94
PD T++ ++DG CK G+ +E + ++ I G PNV+T L N
Sbjct: 178 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 237
Query: 95 ----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-----KIPSRTLYDTL 145
++D G P IT++ ++ A C ++D+AL LL M G +P + ++ L
Sbjct: 238 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNIL 297
Query: 146 I 146
I
Sbjct: 298 I 298
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F +A + + M P+V T+ L A ++L + N G+ P+V
Sbjct: 302 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNV 361
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY A++ G CK GR E + L E + G P+ +IT+ +++
Sbjct: 362 VTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPD------------------SITYGSLV 403
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
ALC + D AL L+ + G P Y+ L+ L
Sbjct: 404 YALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 441
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 19/127 (14%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI----------- 90
DG+ P + TY +++G CK MEL E +ERG P+VV TLI
Sbjct: 31 DGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEE 90
Query: 91 --HLH-NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG--KIPSRTLYDTL 145
LH ++ G +P +T++ +I LC VG+ID+A L+ M +P+ Y++
Sbjct: 91 ARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSF 150
Query: 146 IKKLDQQ 152
+ L +Q
Sbjct: 151 LDGLCKQ 157
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C AR ++D M + G PNV TY L EA + L + + G PD
Sbjct: 337 CKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDS 396
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY +++ C+ R+++ ++L++E G P+ VT + L
Sbjct: 397 ITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEE 456
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ GH P + TF L G + + LL ++ G +P T +++
Sbjct: 457 MVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 508
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 30/156 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + ++ M +G P+ TY L +A +++ +K+ G PD
Sbjct: 372 CKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDT 431
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------IH-----------LHN 94
TY ++DG K G++ + + +L E + +G P+ T +H L
Sbjct: 432 VTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRV 491
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKID--KALLLLF 128
V+ G +P T ++++ +C GK+D KA++ F
Sbjct: 492 VLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEF 527
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ + +A K++D M D G P++ TY ++ +A E L N+ + G +P+
Sbjct: 78 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 137
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y V+ G C R + EL+ E ++G PNVVT L L
Sbjct: 138 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 197
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P ++++N ++ A C K+DKA+ L LM G P Y+TL+ L
Sbjct: 198 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 252
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +D M G +P++ +Y L A E+L +K+ G P
Sbjct: 217 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 276
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y V+DG K G++ E +ELLNE + +G+ P+++T +
Sbjct: 277 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 336
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D+G P T+ +N +I LC + A+ L M +G +P+ + Y LI+ L
Sbjct: 337 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 392
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------L 89
++PD YTY ++ G C GR+ + +L+E + R P+VVT +
Sbjct: 28 VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 87
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L + D G P +T+N V+ +C G++D A+ L + +G P+ Y+ ++K L
Sbjct: 88 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 32/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A ++D G+ P V+ YTIL +A E+ N+ + PD
Sbjct: 171 CQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDA 226
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y A++ G C+ + +E L E ER V P+V T LI LH
Sbjct: 227 IAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHE 286
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++D G P T+TFN+++ LC GK ++A LL +M E PS Y+TLI L +Q
Sbjct: 287 MVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQ 344
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F A ++ M + P+ TY L A +++ + G PDV
Sbjct: 307 CKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDV 366
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY+ + DG CK GR +E EL+ E +G TPN+V TLI L +
Sbjct: 367 VTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLES 426
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P +T+ ++ LC G++DKAL ++ M + G PS Y L++ L
Sbjct: 427 LVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 481
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C KND A + + M + P+V TY IL +A EML + + G+ PD
Sbjct: 236 HCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPD 295
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV-------- 95
T+ ++MDG CK G+ LL ER P+ T L NV
Sbjct: 296 TVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVD 355
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P +T++ + LC G+ID+A L+ M G P+ Y+TLI L
Sbjct: 356 EFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGL 411
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 29/132 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +++ M G PN+ TY L +AYE+L ++ + G PDV
Sbjct: 377 CKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDV 436
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DG CK GR ++ ++++ ++RG TP+V IT+ ++
Sbjct: 437 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSV------------------ITYTALM 478
Query: 112 QALCGVGKIDKA 123
+ LC G++D+A
Sbjct: 479 EGLCRTGRVDEA 490
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + E V + M G PN+ TY I+ EA+ L ++ + G PD
Sbjct: 548 YCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 607
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
V +Y ++DG K + E ++L++ I+ G+ P+ VT L
Sbjct: 608 VVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILK 667
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIKKL 149
N+I G P +T+N +I L ++ A L+ M +G + S T Y+T+I +L
Sbjct: 668 NMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRL 724
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 60/207 (28%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++++ + +G+ P+V TYTI+ +A +M+ + G P V
Sbjct: 412 CKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSV 471
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TYTA+M+G C+ GR +E + E + + T + + + L N
Sbjct: 472 ITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDG 531
Query: 95 -----VIDI---------------------------GHIPRTITFNNVIQALCGVGKIDK 122
ID+ G +P T+N V+ LC GK+D+
Sbjct: 532 IRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE 591
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKL 149
A L M+ G +P Y+ +I L
Sbjct: 592 AFPFLESMHSAGCVPDVVSYNIIIDGL 618
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 28/151 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EAR+V+D M G P+ TY L +A +L N+ G+ PD TY ++
Sbjct: 626 EARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLI 685
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G + R + EL++E + G + T T+N +I LC G
Sbjct: 686 SGLSQTNRLGDAYELMHEMLRNGCVVSACT-----------------TYNTIIDRLCKEG 728
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +ALLL+ M HG + Y+ I +L
Sbjct: 729 CLKQALLLMDHMTGHGVEANTVTYNIFIDRL 759
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++D+M +G N TY I EA +L + D L+ +V
Sbjct: 725 CKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM--DTLRDEV 782
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE-RGV-----TPNVV------------TLIHLH 93
+YT V+ G CK + + +L E + +G+ T N++ L L
Sbjct: 783 -SYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLG 841
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G P IT+N VI LC + K+DKA L M G + S Y LI L Q
Sbjct: 842 LMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ 900
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA +L + G P V TY V+ CK+ + ++ EL +E RG+
Sbjct: 835 EALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI----------- 883
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ ++++ +I LCG G+ +AL +L
Sbjct: 884 -------VASSVSYTVLIYGLCGQGRGKEALQVL 910
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ EA ++ + M G+ PNV +YT + A ++ ++ +G KP+V
Sbjct: 174 CNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNV 233
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
TY+ ++D CK N+ ME L+E +ERG+ PNV T + H ++G +
Sbjct: 234 VTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKE 293
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+TF ++ LC G + +A L+ M E G P + Y+ L+
Sbjct: 294 MVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALM 345
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA+KV + M G P +Y IL EA +L + + L PD
Sbjct: 348 YCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPD 407
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHI-------- 101
TY+ +M G C++GR E + L E G PN+VT +I L GH+
Sbjct: 408 TVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLK 467
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + + +I+ + GK++ A L ++ G P Y +IK L
Sbjct: 468 SMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGL 523
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 36/177 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN EA ++ M PN T+TIL EA + + G++PD
Sbjct: 278 FCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPD 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
+ TY A+MDG+C NE ++ I +G P H +N++ G+
Sbjct: 338 ISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGA----HSYNILINGYCKSRRMDEAK 393
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+T++ ++Q LC +G+ +AL L M +G P+ Y L+
Sbjct: 394 SLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILL 450
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------V 95
G+ PD T+ A+++G C G+ E +EL NE ++RG PNV++ + N
Sbjct: 158 GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMA 217
Query: 96 IDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D+ G P +T++ +I +LC ++ A+ L M E G P+ Y++++
Sbjct: 218 VDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIV 275
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA K++ M + PN+ YTIL A E+ + DG +PD
Sbjct: 453 FCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPD 512
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ TYT ++ G K G S+E +L + + G PN +
Sbjct: 513 IRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCS 550
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 11/90 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+++ +F +G P++ TYT++ EAY++ +++DG P+ +Y ++
Sbjct: 497 AKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQ 556
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
GF + S+ + L++E + + + N+ T
Sbjct: 557 GFLQNQDSSTAIRLIDEMVGKRFSVNLSTF 586
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 17/119 (14%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------- 96
+P V + + F K + + V+ L N+ VT NV +L L N +
Sbjct: 90 RPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVS 149
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G P ITFN +I LC GKI +A+ L M + G P+ Y T+I L
Sbjct: 150 VLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ + +A K++D M D G P++ TY ++ +A E L N+ + G +P+
Sbjct: 3 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y V+ G C R + EL+ E ++G PNVVT L L
Sbjct: 63 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P ++++N ++ A C K+DKA+ L LM G P Y+TL+ L
Sbjct: 123 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 177
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +D M G +P++ +Y L A E+L +K+ G P
Sbjct: 142 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 201
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y V+DG K G++ E +ELLNE + +G+ P+++T +
Sbjct: 202 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 261
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D+G P T+ +N +I LC + A+ L M +G +P+ + Y LI+ L
Sbjct: 262 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 317
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 42/187 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A +V+D M +P+V TYTIL A ++L +++ G PDV
Sbjct: 215 CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDV 274
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G CK GR +E ++ LN+ G PNV+T HN+I
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT----HNIILRSMCSTGRWMDAEK 330
Query: 97 ---DI---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---- 146
D+ G P +TFN +I LC G + +A+ +L M +HG P+ Y+ L+
Sbjct: 331 LLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFC 390
Query: 147 --KKLDQ 151
KK+D+
Sbjct: 391 KEKKMDR 397
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + ++ M G +P++ TY + +A E+L + + G P
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG K G++ + ++LL+E + + P+ +T L H
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G P +TFN+++ LC + D+A+ L M G P+ T Y LI+ L
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C +A K+++ + +G P+V TY ++ E L + + PDV T
Sbjct: 147 FCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVT 206
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
Y ++ C G+ + ME+L+ ++R P+V+T LI L +
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G P +T+N ++ +C G++D+A+ L M G P+ ++ +++ +
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K A +++ M +G PN +Y L A E L + + G PD+
Sbjct: 355 CRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDI 414
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ CK G+ + +E+LN+ +G +P + IT+N VI
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL------------------ITYNTVI 456
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
L GK KA+ LL M P Y +L+ L ++
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
D +N V T + E ++ L N+ G PD+ T ++ GFC++G++ + ++L
Sbjct: 102 DVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILE 161
Query: 76 EAIERGVTPNVVTLIHLHNVIDIGHI------------------PRTITFNNVIQALCGV 117
G P+V+T +NV+ G+ P +T+N ++++LC
Sbjct: 162 ILEGSGAVPDVIT----YNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDS 217
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
GK+ +A+ +L M + P Y LI+
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIE 247
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN T+ + A + L+ + N G KP+ +YT +++G G + E
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Query: 71 MELLNEAIERGV 82
+ELLNE +G+
Sbjct: 574 LELLNELCNKGL 585
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ + +A K++D M D G P++ TY ++ +A E L N+ + G +P+
Sbjct: 206 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 265
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y V+ G C R + EL+ E ++G PNVVT L L
Sbjct: 266 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 325
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P ++++N ++ A C K+DKA+ L LM G P Y+TL+ L
Sbjct: 326 IPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 380
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +D M G +P++ +Y L A E+L +K+ G P
Sbjct: 345 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 404
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y V+DG K G++ E +ELLNE + +G+ P+++T +
Sbjct: 405 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 464
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D+G P T+ +N +I LC + A+ L M +G +P+ + Y LI+ L
Sbjct: 465 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 520
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
D YT ++ G C GR+ + +L+E + R P+VVT + L
Sbjct: 159 DAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL 218
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G P +T+N V+ +C G++D A+ L + +G P+ Y+ ++K L
Sbjct: 219 DEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 275
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNE-AIER---------------GVTPNVVTLIHL 92
PDV Y A+M G+C G+ + E A+ER G T N + + L
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAV--L 183
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ +P +T+ +++A C +A+ LL M + G P Y+ ++ + Q+
Sbjct: 184 DEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQE 243
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D AR D M G + TYT L EA +L +++ GL D
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYT ++DG+CKVG+ E + N+ +++ VTPNVVT LH
Sbjct: 425 AVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLH 484
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G T+N++I LC G +++A+ + M E G P Y T+I L Q
Sbjct: 485 EMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M G N+ TY L +A ++++ GLKPDV
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++ C+ + LL E +++G+ P +V T+N ++
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIV------------------TYNVLM 572
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
C G+++ LL M E P+ T Y++L+K+
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC ++ A K++ M G N YT + +A ++ ++ G+ D
Sbjct: 295 YCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLD 354
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+T VM GFC+ G +E +RG+ + VT L N +
Sbjct: 355 AAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D G +T+ +I C VGK+ +A L+ M + P+ Y L L +Q
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C ++++++M + HPN TTY ++++ Y + N+K + + P+
Sbjct: 575 FCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
TY ++ G CK E + +E IE+G
Sbjct: 635 ENTYNILIKGHCKARNMKEALYFHSEMIEKG 665
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPDV 51
C + A ++ M D G P + TY +L E + L+ + + P+
Sbjct: 541 CQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNT 600
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++M +C E+ + + V PN T+N +I
Sbjct: 601 TTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN------------------ENTYNILI 642
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ C + +AL M E G + + Y+ LI+ L+++
Sbjct: 643 KGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKK 683
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDV TY ++ G+C + ++LL+E RG+ N + +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELN------------------PVAYT 324
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+VI LC G++ A+ ++ M HG + ++ T++
Sbjct: 325 SVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D AR D M G + TYT L EA +L +++ GL D
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYT ++DG+CKVG+ E + N+ +++ VTPNVVT LH
Sbjct: 425 AVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLH 484
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G T+N++I LC G +++A+ + M E G P Y T+I L Q
Sbjct: 485 EMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M G N+ TY L +A ++++ GLKPDV
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++ C+ + LL E +++G+ P +V T+N ++
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIV------------------TYNVLM 572
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
C G+++ LL M E P+ T Y++L+K+
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC ++ A K++ M G N YT + +A ++ ++ G+ D
Sbjct: 295 YCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLD 354
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+T VM GFC+ G +E +RG+ + VT L N +
Sbjct: 355 AAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D G +T+ +I C VGK+ +A L+ M + P+ Y L L +Q
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C ++++++M + HPN TTY ++++ Y + N+K + + P+
Sbjct: 575 FCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
TY ++ G CK E + +E IE+G
Sbjct: 635 ENTYNILIKGHCKARNMKEALYFHSEMIEKG 665
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPDV 51
C + A ++ M D G P + TY +L E + L+ + + P+
Sbjct: 541 CQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNT 600
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++M +C E+ + + V PN T+N +I
Sbjct: 601 TTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN------------------ENTYNILI 642
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ C + +AL M E G + + Y+ LI+ L+++
Sbjct: 643 KGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKK 683
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDV TY ++ G+C + ++LL+E RG+ N + +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELN------------------PVAYT 324
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+VI LC G++ A+ ++ M HG + ++ T++
Sbjct: 325 SVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D AR D M G + TYT L EA +L +++ GL D
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYT ++DG+CKVG+ E + N+ +++ VTPNVVT LH
Sbjct: 425 AVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLH 484
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G T+N++I LC G +++A+ + M E G P Y T+I L Q
Sbjct: 485 EMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M G N+ TY L +A ++++ GLKPDV
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++ C+ + LL E +++G+ P +V T+N ++
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIV------------------TYNVLM 572
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
C G+++ LL M E P+ T Y++L+K+
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC ++ A K++ M G N YT + +A ++ ++ G+ D
Sbjct: 295 YCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLD 354
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+T VM GFC+ G +E +RG+ + VT L N +
Sbjct: 355 AAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D G +T+ +I C VGK+ +A L+ M + P+ Y L L +Q
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C ++++++M + HPN TTY ++++ Y + N+K + + P+
Sbjct: 575 FCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
TY ++ G CK E + +E IE+G
Sbjct: 635 ENTYNILIKGHCKARNMKEALYFHSEMIEKG 665
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPDV 51
C + A ++ M D G P + TY +L E + L+ + + P+
Sbjct: 541 CQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNT 600
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++M +C E+ + + V PN T+N +I
Sbjct: 601 TTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN------------------ENTYNILI 642
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ C + +AL M E G + + Y+ LI+ L+++
Sbjct: 643 KGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKK 683
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDV TY ++ G+C + ++LL+E RG+ N + +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELN------------------PVAYT 324
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+VI LC G++ A+ ++ M HG + ++ T++
Sbjct: 325 SVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D A+ V D M + PNV TYT L A E+L + G+ P+
Sbjct: 124 FCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPN 183
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
V TY+ ++DGFCKV R +E +LL + + +G+ P VVT I L+++ +
Sbjct: 184 VATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFR 243
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
P +T+N +++ALC ++D A L M G P YDTL
Sbjct: 244 GMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 295
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EAR + + M +PNV TY L AYE+ + G P
Sbjct: 55 CQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTE 114
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
+Y ++DGFCK ++ ++ + PNVVT L
Sbjct: 115 VSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDG 174
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P T++ +I C V ++D+A LL M G P+ Y+ L+ L
Sbjct: 175 MVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 229
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T I +A + + G+KPD + Y V+ G C+ + E L + +++ + PNVV
Sbjct: 22 TKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV- 80
Query: 89 LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N +I LC +I+ A L M G +P+ Y+TLI
Sbjct: 81 -----------------TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 121
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A+ + M G N TYT+L + +EM ++ DG+ P++
Sbjct: 209 CKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
YTY VM+ CK GR+ + ++ +E ERGV+ N+VT L + V+D
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I CGVGK+ KAL L + G PS Y+ L+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA KV+D M +G +PN+ TY L +A + ++K+ GL P +
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY ++ GFC+ G ++ +++ E ERG+ P+ VT L +
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++G +P T++ +I C G++++A L M E P+ +Y+T+I
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMI 485
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D A K++ M + G P+ TYTIL +A ++ ++++ GL PD
Sbjct: 383 FCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPD 442
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+TY+ ++ GFC G+ NE L +E+ PN + +N +
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPN------------------EVIYNTM 484
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C G +AL LL M E P+ Y +I+ L
Sbjct: 485 ILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVL 523
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +++++L+ + G P+V YT ++DG CK G + +L E + G+ N T
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238
Query: 92 LHNVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L N + + G P T+N V+ LC G+ A + M E G
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERG 298
Query: 135 KIPSRTLYDTLIKKL 149
+ Y+TLI L
Sbjct: 299 VSCNIVTYNTLIGGL 313
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 28/142 (19%)
Query: 18 MFDNGYHPNVTTYTILEAYEM----------LMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
M DNG+ P + L + + N + DVY++ ++ G C+ G
Sbjct: 120 MVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEI 179
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ +LL E E G +PNVV + +I C G+I+KA L
Sbjct: 180 EKSFDLLIELTEFGFSPNVV------------------IYTTLIDGCCKKGEIEKAKDLF 221
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
F M + G + + Y LI L
Sbjct: 222 FEMGKLGLVANERTYTVLINGL 243
Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA ++ M + PN Y + A ++L ++ L P+
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
V +Y +++ CK +S E L+ + I+ G+ P+ L + + H+
Sbjct: 513 VASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRAKNDSHV 563
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + + FEAR V+ M + G PNV TY+ + EA ++ + G KPD
Sbjct: 125 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPD 184
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V++Y +++G+CK R E +L NE I +G+TP++V TLI
Sbjct: 185 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK 244
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N++ G++P T++ ++ C G + KA L M P+ +Y+ LI +
Sbjct: 245 NMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM 300
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 28/164 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M GY P+V TYT + A + + G +PDV TY+ ++D CK R
Sbjct: 1 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNN 109
NE +++ + +G++PN+ T LI L+ ++ + +P +TF+
Sbjct: 61 VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
+I C G + +A +L M E G P+ Y +L+ Q
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQA 164
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M NG P++ TY+IL +A+ + +++ LKP++
Sbjct: 231 CQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNM 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
Y ++D CK E +L +E +G+ PN+
Sbjct: 291 VMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNM 325
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D A+ V D M + PNV TYT L A E+L + G+ P+
Sbjct: 229 FCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPN 288
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
V TY+ ++DGFCKV R +E +LL + + +G+ P VVT I L+++ +
Sbjct: 289 VATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFR 348
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
P +T+N +++ALC ++D A L M G P YDTL
Sbjct: 349 GMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 400
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EAR + + M +PNV TY L AYE+ + G P
Sbjct: 160 CQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTE 219
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
+Y ++DGFCK ++ ++ + PNVVT L
Sbjct: 220 VSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDG 279
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P T++ +I C V ++D+A LL M G P+ Y+ L+ L
Sbjct: 280 MVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 334
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 28/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNG------YHPNV----TTYTILEAYEMLMNVKNDGLKPDVY 52
C N EAR++I+ M Y P V T I +A + + G+KPD +
Sbjct: 91 CKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAF 150
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
Y V+ G C+ + E L + +++ + PNVV T+N +I
Sbjct: 151 IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV------------------TYNTLIN 192
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC +I+ A L M G +P+ Y+TLI
Sbjct: 193 GLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 226
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 29/168 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+ ++V M + GY + Y IL EAY++L ++ K Y+ ++
Sbjct: 28 QVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTII 87
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
+ CK+ R E EL+ E + R P+ +T L + + G
Sbjct: 88 NWLCKLNRVEEARELI-EKMARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIK 146
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +N V+ LC K+++A LL M + P+ Y+TLI L
Sbjct: 147 PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGL 194
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 22/103 (21%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P T+ V DGF K GR +V E+ +++ G+ R +
Sbjct: 8 PGAATFNTVADGFAKAGRLEQVKEV------------------YQGMVEAGYTLRASGYG 49
Query: 109 NVIQALCGVGKIDKALLLLFLM----YEHGKIPSRTLYDTLIK 147
+I LC VG D+A LL M ++ I T+ + L K
Sbjct: 50 ILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCK 92
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + + FEAR V+ M + G PNV TY+ ++EA ++ + G KPD
Sbjct: 342 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPD 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V++Y +++G+CK R E +L NE I +G+TP++V TLI
Sbjct: 402 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK 461
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N++ G++P T++ ++ C G + KA L M P+ +Y+ LI +
Sbjct: 462 NMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM 517
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F +A ++ D M GY P+V TYT + A + + G +PDV
Sbjct: 203 CKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDV 262
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TY+ ++D CK R NE +++ + +G++PN+ T LI L+
Sbjct: 263 VTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNE 322
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ + +P +TF+ +I C G + +A +L M E G P+ Y +L+
Sbjct: 323 MMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLM 374
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EARK+ +F G PNV YT + EA E N++ DG P+
Sbjct: 518 CKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNE 577
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
++Y ++ GF + + ++L+ E E+G +V T
Sbjct: 578 FSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
+ +L + GL+ + T+ +++G CKVG+ + +EL ++ + RG P+V T + N
Sbjct: 176 GFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIIN 235
Query: 95 VI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ + G P +T++ +I +LC ++++AL + M G P
Sbjct: 236 GLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISP 295
Query: 138 SRTLYDTLIKKL 149
+ Y++LI+ L
Sbjct: 296 NIFTYNSLIQGL 307
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M NG P++ TY+IL +A+ + +++ LKP++
Sbjct: 448 CQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNM 507
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++D CK E +L +E +G+ PNV + +I
Sbjct: 508 VMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQ------------------IYTTII 549
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G +D+AL M E G P+ Y+ +I+ Q
Sbjct: 550 NGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQ 589
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ M PN+ Y IL EA ++ + GL+P+
Sbjct: 482 FCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 541
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
V YT +++G CK G +E +E E G PN
Sbjct: 542 VQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPN 576
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +F A+KV+ M + G N TY +L EA+ ++++ GL PD
Sbjct: 232 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 291
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+TY A+++G CK RSNE LL+E + PNVV +L
Sbjct: 292 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 351
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G P IT++N+++ LC +G++D+A LLL M P Y+ +I+
Sbjct: 352 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 405
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 29/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A ++D M G PN+ Y L A + ++ GL P+
Sbjct: 653 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 712
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-----VVT------------LIHLHN 94
TYT+++DG CKVG + L NE + G+TP+ V+T + +
Sbjct: 713 VTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEE 772
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ GH + +FNN++ C GK+ + L LL ++ G +P+ + +I L +
Sbjct: 773 MFLRGHASIS-SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 828
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ M + + P+ TY ++ +A+ +L ++N G+ P+V
Sbjct: 373 CKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNV 432
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY+ ++ G C+ G + +LL E +G+ PN L
Sbjct: 433 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDK 492
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +P +N++I L VG+++++ M E G +P+ Y LI
Sbjct: 493 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 544
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y +D + M D G + Y IL A+ +L ++ +G PD
Sbjct: 582 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD 641
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+ Y++++ G CK + +L+E ++GV PN+V L +
Sbjct: 642 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 701
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+++ G +P +T+ ++I C VG I A L M G P +Y L
Sbjct: 702 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 753
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 73/205 (35%), Gaps = 82/205 (40%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C D AR V + + G PN TYT I A+ + + G+ PD
Sbjct: 688 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 747
Query: 52 YTYTAV----------------------------------MDGFCKVGRSNEVMELLNEA 77
+ Y+ + +DGFCK G+ E ++LL+
Sbjct: 748 FVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVI 807
Query: 78 IERGVTPNVVTL---------------IH---------------------LHNVIDIGHI 101
+ RG+ PN +T+ +H ++I+ G I
Sbjct: 808 MGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKI 867
Query: 102 PRTITFNNVIQALCGVGKIDKALLL 126
P + +++I+ C G +DKAL+L
Sbjct: 868 PLDVV-DDMIRDHCKEGNLDKALML 891
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + A ++ D M P++ Y L E+ + ++ GL P+
Sbjct: 477 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 536
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+TY+ ++ G+ K G +L+ ++ G+ PN V I L
Sbjct: 537 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 596
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++D G + + +I L G ++ A +L + ++G +P +Y +LI L
Sbjct: 597 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGL 652
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E+ K M + G PN TY+ L A +++ + + GLKP+ Y ++
Sbjct: 520 ESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLL 579
Query: 59 DGFCKVGRSNEVMELLNEAIERGVT-PNVVTLIHLHNVIDIGH----------------I 101
+ + K +V +++GV N + I +HN+ G+ +
Sbjct: 580 ESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSV 639
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++++I LC +KA +L M + G P+ Y+ LI L
Sbjct: 640 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 687
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 36/179 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA +V+D +P+V TYTIL +A ++L +++ G KPDV
Sbjct: 223 CDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDV 282
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV---------------- 95
TY +++G CK GR +E + LN G PNV+T HN+
Sbjct: 283 VTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVIT----HNIILRSMCSTGRWMDAEK 338
Query: 96 -----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I G P +TFN +I LC G I +A+ +L M +HG P+ Y+ L+ L
Sbjct: 339 FLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHAL 397
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYTY 54
C ++A +V++ + D+G P+V TY +L E L + + PDV TY
Sbjct: 156 CKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTY 215
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
++ C G+ E ME+L+ ++R P+V+T LI L + D
Sbjct: 216 NTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRD 275
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+N +I +C G++D+A+ L M +G P+ ++ +++ +
Sbjct: 276 KGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSM 327
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K A V++ M +G PN +Y L A E L + + G PD+
Sbjct: 363 CRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDI 422
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ CK G+ + +E+LN+ +G +P + IT+N VI
Sbjct: 423 VTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVL------------------ITYNTVI 464
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
L VGK D A+ LL M G P Y TL+ L ++
Sbjct: 465 DGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSRE 505
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++++ + G P + TY + +A ++L +K GLKPD+
Sbjct: 433 CKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDI 492
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ ++ G + G+ +E + ++ E GV PN IT+N+++
Sbjct: 493 ITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPN------------------AITYNSIM 534
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC + +A+ L M G P+ T Y LI+ L
Sbjct: 535 LGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGL 572
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG---RSNEVMELLNEAIERGVTPNVVTL- 89
E ++ L ++ G PD+ T+++ G CK G ++ VME+L ++ G P+V+T
Sbjct: 128 EGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDS---GAVPDVITYN 184
Query: 90 IHLHNVIDIGHI-------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + G I P +T+N +++ LC GK+ +A+ +L +
Sbjct: 185 VLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECY 244
Query: 137 PSRTLYDTLIK 147
P Y LI+
Sbjct: 245 PDVITYTILIE 255
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 46/119 (38%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A K++D M G P++ TY+ L EA +++ G+KP+ TY ++M
Sbjct: 475 DAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIM 534
Query: 59 DGFCKV-----------------------------------GRSNEVMELLNEAIERGV 82
G CK G + E +ELLNE RGV
Sbjct: 535 LGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGV 593
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +F A+KV+ M + G N TY +L EA+ ++++ GL PD
Sbjct: 254 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 313
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+TY A+++G CK RSNE LL+E + PNVV +L
Sbjct: 314 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 373
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G P IT++N+++ LC +G++D+A LLL M P Y+ +I+
Sbjct: 374 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 427
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 29/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A ++D M G PN+ Y L A + ++ GL P+
Sbjct: 675 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 734
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-----VVT------------LIHLHN 94
TYT+++DG CKVG + L NE + G+TP+ V+T + +
Sbjct: 735 VTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEE 794
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ GH + +FNN++ C GK+ + L LL ++ G +P+ + +I L +
Sbjct: 795 MFLRGHASIS-SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 850
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ M + + P+ TY ++ +A+ +L ++N G+ P+V
Sbjct: 395 CKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNV 454
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY+ ++ G C+ G + +LL E +G+ PN L
Sbjct: 455 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDK 514
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +P +N++I L VG+++++ M E G +P+ Y LI
Sbjct: 515 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 566
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y +D + M D G + Y IL A+ +L ++ +G PD
Sbjct: 604 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD 663
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+ Y++++ G CK + +L+E ++GV PN+V L +
Sbjct: 664 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 723
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+++ G +P +T+ ++I C VG I A L M G P +Y L
Sbjct: 724 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 775
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKN----DGLKPDVYTYTAVM 58
+A +V+ M D G P++ L +A +L V+ G+ PDVYTY+ ++
Sbjct: 192 DAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLI 251
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ +CKV + ++L E ERG N T+T+N +I LC G
Sbjct: 252 EAYCKVREFDTAKKVLVEMRERGCGLN------------------TVTYNVLIAGLCRSG 293
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++A M ++G +P Y LI L
Sbjct: 294 AVEEAFGFKKDMEDYGLVPDGFTYGALINGL 324
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 73/205 (35%), Gaps = 82/205 (40%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C D AR V + + G PN TYT I A+ + + G+ PD
Sbjct: 710 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 769
Query: 52 YTYTAV----------------------------------MDGFCKVGRSNEVMELLNEA 77
+ Y+ + +DGFCK G+ E ++LL+
Sbjct: 770 FVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVI 829
Query: 78 IERGVTPNVVTL---------------IH---------------------LHNVIDIGHI 101
+ RG+ PN +T+ +H ++I+ G I
Sbjct: 830 MGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKI 889
Query: 102 PRTITFNNVIQALCGVGKIDKALLL 126
P + +++I+ C G +DKAL+L
Sbjct: 890 PLDVV-DDMIRDHCKEGNLDKALML 913
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + A ++ D M P++ Y L E+ + ++ GL P+
Sbjct: 499 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 558
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+TY+ ++ G+ K G +L+ ++ G+ PN V I L
Sbjct: 559 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 618
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++D G + + +I L G ++ A +L + ++G +P +Y +LI L
Sbjct: 619 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGL 674
Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E+ K M + G PN TY+ L A +++ + + GLKP+ Y ++
Sbjct: 542 ESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLL 601
Query: 59 DGFCKVGRSNEVMELLNEAIERGVT-PNVVTLIHLHNVIDIGH----------------I 101
+ + K +V +++GV N + I +HN+ G+ +
Sbjct: 602 ESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSV 661
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++++I LC +KA +L M + G P+ Y+ LI L
Sbjct: 662 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 709
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+K +A K+ D + G+ P++ TYT + A ++L ++ G KPDV
Sbjct: 152 CSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDV 211
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHI--------- 101
Y V+D CK R+NE M +E +++G+ PNVVT LH ++G +
Sbjct: 212 VAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQ 271
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+TF ++ LC G I +A + +M E+G P Y L+
Sbjct: 272 MIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALM 323
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 36/180 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN EA + M PN T+TIL EA + + +G++PD
Sbjct: 256 FCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPD 315
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
YTY+A+MDG+C + +E +L + + +G P+V ++N++ GH
Sbjct: 316 AYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSV----RVYNILINGHCKSRRLNEAK 371
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+T++ ++Q C G+ A L M +G +P Y L+ L
Sbjct: 372 TLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGL 431
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
+C EA+ ++ M+D P+ TY+ L A ++ + + GL PD
Sbjct: 361 HCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPD 420
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY+ ++DG CK G +E LL E + P++ +N +
Sbjct: 421 SITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHIC------------------IYNIL 462
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IQ +C GK++ A L ++ G PS Y +I L
Sbjct: 463 IQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGL 501
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +++ M ++ P++ Y IL A E+ N+ G++P V
Sbjct: 432 CKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSV 491
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYT ++ G K G SNE E+ + + G PN T
Sbjct: 492 VTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCT 528
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN AR++ +F G P+V TYT++ EA EM + +G P+
Sbjct: 467 CNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNS 526
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY + GF + G + + L+ E + RG + + T
Sbjct: 527 CTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTF 564
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 24 HPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
PNV T TIL A+ L + GL+P T+ +++G C + +
Sbjct: 101 RPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDA 160
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
++L +E + +G P IT+ +I+ LC +G AL LL M
Sbjct: 161 VKLFDE------------------IGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKM 202
Query: 131 YEHGKIPSRTLYDTLIKKL 149
E G P Y+T+I L
Sbjct: 203 EEKGCKPDVVAYNTVIDSL 221
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ K +A K++D M N Y P+V TYTI+ +AY +L ++ +G +P
Sbjct: 332 CFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEP 391
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
++YTY A++ G C V R E +EL+ + GV PN+ T L H
Sbjct: 392 NIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMF 451
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + G P +T+N ++ C ++ +A+ +L M+++ P Y TLI+ L Q
Sbjct: 452 NEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQ 510
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA ++ M N P+ TYT L +A M ++N G +
Sbjct: 473 YCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVN 532
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT---PNVVTLIH--------------LH 93
T + G +VG + +RG + IH L+
Sbjct: 533 FDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLY 592
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I+ G+ P T+N +I+ C G++D A +L M E+G P Y+ LIK+ Q
Sbjct: 593 EMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQ 651
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + M +NG N TYT + +A ++L ++ + PDV TYT V+
Sbjct: 307 AENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVIS 366
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
CK + +L + E G PN+ T+N +IQ LC V +
Sbjct: 367 ALCKRKMIEQAYGVLQKMRENGCEPNIY------------------TYNALIQGLCAVRR 408
Query: 120 IDKALLLLFLMYEHGKIP 137
++AL L+ LM E G +P
Sbjct: 409 PEEALELVTLM-EQGGVP 425
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + EA+ ++ M + GY PN+TTY + +A ML + +G+ P
Sbjct: 577 CLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGP 636
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
D +Y ++ F GR+ + +L A+ERGV N +I
Sbjct: 637 DTGSYNILIKEFHNQGRTQDADQLYATALERGVVLNPKPVIQ 678
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C F EA +++ M DNG P+V TY L EA+ + ++ G P
Sbjct: 88 CLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVP 147
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
D +TY +++ G KVGRS + MELL E G P+V+T L
Sbjct: 148 DTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLF 207
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +ITF ++ AL G++D AL LL M E G P Y+ LI
Sbjct: 208 QEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALI 261
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++++ M +G P+V TY+ L +A+++ +K G KPD T+TA+M
Sbjct: 167 KAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALM 226
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID----IGHI 101
D K GR ++ +ELL+E ERGV P VVT L+ +N++D G
Sbjct: 227 DALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCK 286
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T++ +I L ++D+A +L M + G P Y+TLI L
Sbjct: 287 PDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+ + + + + P+V +Y+ L A E++ ++ G KP+++TY ++
Sbjct: 27 EAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLV 86
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHI 101
D K G+ +E + LL E + G P+V T L + + + G +
Sbjct: 87 DCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCV 146
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T T+N++I L VG+ KA+ LL M HG P Y +LI L
Sbjct: 147 PDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGL 194
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D EA ++D M NG P+V TY+ L EA ++L ++ +G PD TY
Sbjct: 269 DLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYN 328
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DI 98
+++G K G N+ L + +G P+VVT L + +
Sbjct: 329 TLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESV 388
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+ ++I L G++D A L M G P Y+ + L
Sbjct: 389 GIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSL 439
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 64/188 (34%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL---------------------------------- 33
F EARK+ + M ++G P+V TY L
Sbjct: 445 FKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDE 504
Query: 34 ------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
EA+E+L + GL P +Y A++D K GR +E L + E+G
Sbjct: 505 CLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQG 564
Query: 82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
P++V +++++I AL G+ID A LL M + G S
Sbjct: 565 GKPDIV------------------SYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRS 606
Query: 142 YDTLIKKL 149
Y L++KL
Sbjct: 607 YSNLVRKL 614
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ M G P+V TY EA ++ ++K GL PDV TY A++
Sbjct: 412 DADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALL 471
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV-------------TLIHLHNVIDI----GHI 101
G K ++ LL E IE+G + + + H ++ G
Sbjct: 472 LGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLW 531
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P ++N +I AL G++ +A L + E G P Y +LI L Q
Sbjct: 532 PGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQ 581
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTY----TIL-------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P++ TY T+L +A + ++ GL PDV TY A ++ + GR E
Sbjct: 389 GIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEA 448
Query: 71 MELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVIQA 113
++ + E G+ P+V T L +I+ G ++ F+ ++
Sbjct: 449 RKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEI 508
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L G +D+A LL G P + Y+ LI L
Sbjct: 509 LTSWGNVDEAHELLQFANSKGLWPGASSYNALIDAL 544
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID----------- 97
P+V TY ++++ K G+ E L E TP+VV+ L N +
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66
Query: 98 ------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+N ++ L G+ D+AL LL M ++G +P Y+ LI L
Sbjct: 67 VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTL 124
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+K D +++ + M PNV TY+ L EA +ML + ++PD
Sbjct: 244 FCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPD 303
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YT + DG K GR+++ +++L+ ++RG PN +T+N +
Sbjct: 304 VVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPN------------------NVTYNAI 345
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G++D AL +L M + GK P Y TL+K L
Sbjct: 346 INGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGL 384
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A KV+D M G PN TY + +A +L + G KPDV TY+ ++
Sbjct: 322 DAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLV 381
Query: 59 DGFCKVGRSNEVMELLNEAIERG--VTPNVVT-------------LIHLHNV----IDIG 99
G C VG+ +E ++LLN + + + P+V L H V ++ G
Sbjct: 382 KGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERG 441
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+N +I GK+ KAL L + G P+ Y LI L
Sbjct: 442 FPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGL 491
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKN-DGLKPD 50
Y + +A ++ D+G PN TYT+L + L N K G +P
Sbjct: 456 YLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPT 515
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIG---------- 99
V Y +M C+ + L E P+VV+ I + + G
Sbjct: 516 VSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLL 575
Query: 100 ------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+P ITF+ +I +G++D+A L M G +P L+D+L+K
Sbjct: 576 EMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLK 629
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A++V M + G+ N+ TY IL +A E+ + + G+ P+
Sbjct: 422 CKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNA 481
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TYT +++G CK+ + L N+ G P V TL+
Sbjct: 482 ATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQE 541
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + H P ++FN +I G ++ A LL M +P + LI +
Sbjct: 542 MRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRF 596
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 29/144 (20%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V+ + G+H NV + +L +A ++ +K + L PD +Y V++G C
Sbjct: 116 VLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLC 175
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
K R E EL E PN ++TF+ +I C G +++
Sbjct: 176 KGKRLVEAKELFKEMKGGECKPN------------------SVTFSALIDGFCKNGDVEE 217
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLI 146
LL M + G +Y LI
Sbjct: 218 GFGLLEEMEKMGLEGDVFVYSALI 241
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 35/167 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ND EARK+ D + G P+V +Y IL EA + + L P+
Sbjct: 333 YCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPN 392
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY++++DG CK GR + EL + + G +PNV IT+N +
Sbjct: 393 IVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNV------------------ITYNIM 434
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI------KKLDQ 151
+ ALC + +DKA+ L LM+E G P+ + Y+ LI K++D+
Sbjct: 435 LDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDE 481
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N EA + + M PN+ TY+ L A+E+ + + G P+
Sbjct: 368 YCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPN 427
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----------NVID 97
V TY ++D CK+ ++ +EL N ERG+TPNV + LI+ + N+ +
Sbjct: 428 VITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFE 487
Query: 98 IGH----IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
H +P ++T+N +I LC G+I A L +M++ G
Sbjct: 488 EMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGG 528
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M PNV Y ++ EA ++ +V G+ PDV+TYT ++
Sbjct: 201 EAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLI 260
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
GFC +G+ EV LL + ++R V NV T+N +I ALC G
Sbjct: 261 HGFCGLGQWREVTRLLCDMVDRNVNLNVY------------------TYNILIDALCKKG 302
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ KA + LM E G+ P ++TL+
Sbjct: 303 MLGKAHDMRNLMIERGQRPDLVTFNTLMS 331
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ + MF+ G PNV++Y IL EA + + L PD TY ++
Sbjct: 446 KAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLI 505
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
DG CK GR + EL N + G +V+T
Sbjct: 506 DGLCKSGRISHAWELFNVMHDGGPPVDVIT 535
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC+ A V+ + GY N T T + +A E +V G
Sbjct: 122 CYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLL 181
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
D TY +++G CK+G + E ELL++ + V PNVV +
Sbjct: 182 DEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLY 241
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+V+ G P T+ +I CG+G+ + LL M + + Y+ LI L ++
Sbjct: 242 SDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKK 301
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G+ P + T + +++ +C +G +L ++RG N +TL
Sbjct: 108 GITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKA 167
Query: 90 IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ H+ V+ G + +T+ +I LC +G +A LL M P+ +Y+ ++
Sbjct: 168 LEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDG 227
Query: 149 L 149
L
Sbjct: 228 L 228
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 25/155 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + EA K++ MF N P+ T+ + A ++L + G PD+
Sbjct: 276 CSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDI 335
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+++MDG CK R +E ++LL E + V+ N IP +TFN +I
Sbjct: 336 ITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNC--------------IPDQVTFNTII 381
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+LC G D+A+ ++ M EHG IP T Y+ ++
Sbjct: 382 TSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIV 416
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V D M G P+V TY+IL +A +L +++ G +PD+
Sbjct: 171 CVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDI 230
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
TY +++ C G E +++LN G P+ VT L
Sbjct: 231 VTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTK 290
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ P +TFN VI +LC G + +A +L M EHG P Y +++ L
Sbjct: 291 MFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGL 345
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC + AR++ID + + P+ TY +L+A + ++ + G P
Sbjct: 138 YCRAGNIDAARRMIDSV---PFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPS 194
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----DIGHI----- 101
V TY+ ++D CK + + LL+E +G P++VT L N + D+G
Sbjct: 195 VVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLN 254
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+ V+++LC + ++A LL M+ + P ++ +I L Q+
Sbjct: 255 SLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQK 313
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M NG P+ TTY L A M V+ GL PD Y A++
Sbjct: 428 EALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAIL 487
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
G CK R++ ++ + G P+ T I L
Sbjct: 488 LGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIIL 521
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A +V D M +G +PN TY+ L EA +ML + G++P
Sbjct: 242 HCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPT 301
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTYT + C +GR ++ + L+ ++G +P+V T + H
Sbjct: 302 VYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYH 361
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P T+T+N +I LC G+ AL + M HG + + Y+ +IK L
Sbjct: 362 KMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGL 417
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA V + +F P+ TYT L +A+E+ + DG P+
Sbjct: 208 CKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNS 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHI--------- 101
TY+ +++G C GR E M++L E E+G+ P V T + + ++ DIG +
Sbjct: 268 VTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRS 327
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+ +I L GK++ A+ + M + G +P+ Y+ LI +L
Sbjct: 328 MGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINEL 382
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 29/157 (18%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
+D +A V + M +G P V TY L A L +K +PD TY
Sbjct: 421 DDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTY 480
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
++ GFCK G+ + E ++ G++PN T+ +I
Sbjct: 481 CELISGFCKGGKLDSATSFFYEMLKCGISPN------------------QWTYTAMIDGY 522
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C GKID AL L M E+G S Y+ +I L +
Sbjct: 523 CKEGKIDVALSLFERMEENGCSASIETYNAIISGLSK 559
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 24/169 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A + + M +NG ++ TY + EA + + GL+P+
Sbjct: 522 YCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPN 581
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVID 97
TYT++++G CK +N ++ +E ++ PN T L + +
Sbjct: 582 TITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTE 641
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P T++ ++ LC G+ ++A L+ M E G PS +Y +L+
Sbjct: 642 NGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLL 690
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 30/141 (21%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
A K+ M PN TYT L +A E L +G +P + TY+ ++ G
Sbjct: 601 AFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTE---NGCEPTIDTYSTLVSG 657
Query: 61 FCKVGRSNEVMELLNEAIERGVTPN----------------VVTLIHLHNVIDI-GHIPR 103
C+ GRSNE +L+ E+G++P+ V + + N++ + G P
Sbjct: 658 LCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPH 717
Query: 104 TITFNNVIQALCGVGKIDKAL 124
+ +I ALCGV + ++AL
Sbjct: 718 LFIYKVLICALCGVSRAEEAL 738
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL--- 92
YEML G+ P+ +TYTA++DG+CK G+ + + L E G + ++ T +
Sbjct: 501 YEML----KCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISG 556
Query: 93 --------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
+ + G P TIT+ ++I LC + A + M + +P+
Sbjct: 557 LSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPN 616
Query: 139 RTLYDTLIKKLDQQ 152
Y +LI L Q+
Sbjct: 617 AHTYTSLIYGLCQE 630
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
+ A + + + G+KP + T+ +++ CK G+ E + + N+ + + P+ T
Sbjct: 178 VTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTS 237
Query: 89 --LIHLHN------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H N ++ G P ++T++ +I LC G+I +A+ +L M E G
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y I L
Sbjct: 298 IEPTVYTYTVPISSL 312
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 30/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHP-NVTTYTILEAY----------EMLMNVKNDGLKPD 50
+C + EA K+++ MFDNG P VT ++ AY + ++K G +P+
Sbjct: 275 WCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPN 334
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--LIHLHNVIDIGHIPRTI--- 105
V+TY A++ GFC VG+ + M LL++ E GV P+VVT L+ ID GHI
Sbjct: 335 VWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCID-GHIESAFRLL 393
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I ALC GK+D+A L + G P+ ++T+I L
Sbjct: 394 RLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN ++A ++D M + G P+V TY +L A+ +L ++ +GL D
Sbjct: 345 FCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAAD 404
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY ++D CK G+ +E L + RG+ PN ++TFN V
Sbjct: 405 QYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPN------------------SVTFNTV 446
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC GK D A L M G P Y I+ L
Sbjct: 447 INGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENL 485
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E ML +K G +P Y A++D +C+ ++ E ++LNE + G+ P VT +
Sbjct: 248 EGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVV 307
Query: 94 N----------VIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N + + G P T+N ++Q C VGK+ KA+ LL M E G
Sbjct: 308 NAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVE 367
Query: 137 PSRTLYDTLIK 147
P Y+ LI+
Sbjct: 368 PDVVTYNLLIR 378
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C EA + D + G PN T+ T++ A L + + G PD
Sbjct: 416 CKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDT 475
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHN---------- 94
YTY+ ++ CK S E + ++E +++ V P+ V L N
Sbjct: 476 YTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQ 535
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P +T+ ++A C G++ +A ++ M + G I Y+TLI
Sbjct: 536 MVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLI 587
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 32/163 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A++ + M +G+ P+ T+ L A ++ + G D
Sbjct: 140 CRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDA 199
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y A+++GFC+ GR +E +EL E +E+ P++ T L L
Sbjct: 200 VSYAALIEGFCETGRVDEALELFRE-LEQ---PDMYTHAALVKGLCDARRGEEGLYMLQK 255
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ ++G P T + ++ C K ++A +L M+++G +P
Sbjct: 256 MKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVP 298
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M G P+V TYT + EA ++M +K G+ D Y ++D
Sbjct: 529 ATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLID 588
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
G +G+++ + +L PN T
Sbjct: 589 GHTSIGKTDHAVTILKHMTGVASMPNHFTF 618
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+ +EA + M +G PNV Y L EA ++ ++ G P+V T
Sbjct: 327 RGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT 386
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI--------------- 98
Y+ ++DGF K G E N I G PNVVT + +V+
Sbjct: 387 YSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMT 446
Query: 99 --GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TITFN I+ LCG G+++ A+ LL M HG +P+ T Y+ L+ L
Sbjct: 447 LEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 29/174 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K+++ M +G PN+TTY L EA+ + ++ L+P++
Sbjct: 465 CGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNL 524
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TY V+ GF + G E ++L +A+ RG P+ +T +H G +
Sbjct: 525 VTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVER 584
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P IT+ ++I C I++A+ L G P+ ++ L++
Sbjct: 585 VSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVR 638
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 5 KNDFFEA-RKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDG------LKPDVYTYTAV 57
KND +A K+ M + G P+ TYT + + +D KP V Y A+
Sbjct: 191 KNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNAL 250
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI-GHIPRTI----------- 105
+DG CK GR ++LL E ++ GV PNVV+ + N + + G++
Sbjct: 251 IDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGC 310
Query: 106 -----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +I+ GK+ +AL L LM + G P+ Y+TLI L
Sbjct: 311 DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEA------YEML----MNVKNDGLKPDVYTYTAVM 58
+A K+ + + G P V Y +L+A ++M+ N+K DGL P+V+TY ++
Sbjct: 127 QALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILL 186
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-----------PRTIT 106
CK R + +L E +G P+ VT + ++ G I P
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPV 246
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C G+I+ A+ LL M ++G P+ Y +I L
Sbjct: 247 YNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSL 289
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A K++ M DNG PNV +Y+ + A+ + + G ++
Sbjct: 255 CKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANI 314
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+T+T ++ G G+ E ++L I+ G PNVV +N +I
Sbjct: 315 HTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVV------------------AYNTLI 356
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G +++AL + M G +P+ T Y LI
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ D A + + M +G PNV TYT + +A ++ + +G P+
Sbjct: 394 FAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPN 453
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
T+ + G C GR M+LL G PN+ T L
Sbjct: 454 TITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQ 513
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ ++ P +T+N V+ G + +AL L G P Y+T+I +Q
Sbjct: 514 EIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQ 572
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----- 92
+L +K DG+ + +++G+ +VG + + +++ E G P V HL
Sbjct: 96 ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155
Query: 93 ------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
N+ G IP T+N +++ALC ++D A L M G P
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215
Query: 141 LYDTLIKKL 149
Y T++ L
Sbjct: 216 TYTTMVSSL 224
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C + + EA+ V+ M + G PNV TY +++ Y + M V G KPD
Sbjct: 311 FCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPD 370
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V++Y+ +++G+C V R +E +L NE I +G+TPN T+++ +
Sbjct: 371 VFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPN------------------TVSYTTL 412
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I A C +GK+ +A L M+ +G +P Y L++ +Q
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQ 454
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + YM G P V +YT L EA ML + + + PD+ T++ ++
Sbjct: 249 EALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLI 308
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNV--------------IDIGHI 101
D FCK G E +L E GV PNV+T L+H +++ I G
Sbjct: 309 DIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCK 368
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +++ +I C V +ID+A L M G P+ Y TLI Q
Sbjct: 369 PDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQ 418
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EAR++ M NGY P++ TY++L +A+ + ++ LKP+
Sbjct: 416 FCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPN 475
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ YT ++D CK G N +L +E G+ P+V + +
Sbjct: 476 LVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQ------------------IYTTI 517
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I LC G +D+AL M E G P+ Y+ +I+ Q
Sbjct: 518 INGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQ 558
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C V+ + G P + T+T L +A E+ ++ G +P
Sbjct: 135 CFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQP 194
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI- 98
DVYTYT +++G CK+G + L+ + E G P+VVT L + +DI
Sbjct: 195 DVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIF 254
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +++ ++IQ LC + +A +L M +P + LI
Sbjct: 255 SYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLI 308
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN T IL + +L V GL+P + T+T +++G CK G +
Sbjct: 121 GLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQA 180
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQA 113
+EL ++ + RG P+V T + N + ++G P +T++ +I +
Sbjct: 181 LELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDS 240
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC +++AL + M G P+ Y +LI+ L
Sbjct: 241 LCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGL 276
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + ARK+ +F +G P+V YT + EA E ++ DG P+
Sbjct: 487 CKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNE 546
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
++Y ++ GF + + ++L+ E ++G +
Sbjct: 547 FSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A K+ D M P++ TYT ++EA EM + GL+PD
Sbjct: 357 FCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPD 416
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYTA++DG+CK G E + N+ +++G+TPNVVT LH
Sbjct: 417 EVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLH 476
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P T+N ++ LC +G I++ + L+ M G P Y TL+
Sbjct: 477 EMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLM 529
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + K+++ M G++P+ TYT L +A+E+L + N L+P +
Sbjct: 498 CKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTL 557
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
T+ +M+GFC G + L+ +E+G+ PN T L
Sbjct: 558 VTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKA 617
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ D G +P + T+N +I+ C + +A L M E G + YD LI+
Sbjct: 618 MHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIR 670
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + + K++D + G P+ Y ++EA ++L ++ G+ PD
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHI--------- 101
YT V+ GFCK+G + +L +E + + P++VT +H + G +
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
P +T+ +I C G++ +A + M + G P+ Y L
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTAL 458
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA ++ M D G P+V +Y ++ + +++ +K GLKP
Sbjct: 251 CLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKP 310
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVVTLIHLHNVIDIGH-------- 100
D Y Y ++ CK G E +LL + GV P NVV + +G+
Sbjct: 311 DEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLF 370
Query: 101 --------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P +T+ +VI +C GK+ +A + M G P Y LI
Sbjct: 371 DEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALI 424
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C + ++I++M + G PN TT+ ++++ Y E+ + + G+ PD
Sbjct: 567 FCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPD 626
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ G CK E L E +E+G + T++ +
Sbjct: 627 SNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAA------------------TYDAL 668
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I+ K +A L M +HG + + +YD +
Sbjct: 669 IRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFV 704
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +F A+KV+ M + G N TY +L EA+ ++++ GL PD
Sbjct: 127 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 186
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+TY A+++G CK RSNE LL+E + PNVV +L
Sbjct: 187 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 246
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G P IT++N+++ LC +G++D+A LLL M P Y+ +I+
Sbjct: 247 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 300
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A ++D M G PN+ Y L A + ++ GL P+
Sbjct: 548 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 607
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TYT+++DG CKVG + L NE + G+TP+ + +
Sbjct: 608 VTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEE 667
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ GH + +FNN++ C GK+ + L LL ++ G +P+ + +I L +
Sbjct: 668 MFLRGHASIS-SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 723
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ M + + P+ TY ++ +A+ +L ++N G+ P+V
Sbjct: 268 CKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNV 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY+ ++ G C+ G + +LL E +G+ PN L
Sbjct: 328 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDK 387
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +P +N++I L VG+++++ M E G +P+ Y LI
Sbjct: 388 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 439
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y +D + M D G + Y IL A+ +L ++ +G PD
Sbjct: 477 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPD 536
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+ Y++++ G CK + +L+E ++GV PN+V L +
Sbjct: 537 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 596
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+++ G +P +T+ ++I C VG I A L M G P +Y L
Sbjct: 597 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 648
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKN----DGLKPDVYTYTAVM 58
+A +V+ M D G P++ L +A +L V+ G+ PDVYTY+ ++
Sbjct: 65 DAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLI 124
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ +CKV + ++L E ERG N T+T+N +I LC G
Sbjct: 125 EAYCKVREFDTAKKVLVEMRERGCGLN------------------TVTYNVLIAGLCRSG 166
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++A M ++G +P Y LI L
Sbjct: 167 AVEEAFGFKKDMEDYGLVPDGFTYGALINGL 197
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 73/205 (35%), Gaps = 82/205 (40%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C D AR V + + G PN TYT I A+ + + G+ PD
Sbjct: 583 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 642
Query: 52 YTYTAV----------------------------------MDGFCKVGRSNEVMELLNEA 77
+ Y+ + +DGFCK G+ E ++LL+
Sbjct: 643 FVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVI 702
Query: 78 IERGVTPNVVTL---------------IH---------------------LHNVIDIGHI 101
+ RG+ PN +T+ +H ++I+ G I
Sbjct: 703 MGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKI 762
Query: 102 PRTITFNNVIQALCGVGKIDKALLL 126
P + +++I+ C G +DKAL+L
Sbjct: 763 PLDVV-DDMIRDHCKEGNLDKALML 786
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + A ++ D M P++ Y L E+ + ++ GL P+
Sbjct: 372 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 431
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+TY+ ++ G+ K G +L+ ++ G+ PN V I L
Sbjct: 432 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 491
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++D G + + +I L G ++ A +L + ++G +P +Y +LI L
Sbjct: 492 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGL 547
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E+ K M + G PN TY+ L A +++ + + GLKP+ Y ++
Sbjct: 415 ESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLL 474
Query: 59 DGFCKVGRSNEVMELLNEAIERGVT-PNVVTLIHLHNVIDIGH----------------I 101
+ + K +V +++GV N + I +HN+ G+ +
Sbjct: 475 ESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSV 534
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++++I LC +KA +L M + G P+ Y+ LI L
Sbjct: 535 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 582
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 28/160 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN + +++ D M G NV TY+ L EA +L + G+ PD
Sbjct: 259 FCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD 318
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V TYT ++DG CK GR+ M+LLN +E+G P+ VT L
Sbjct: 319 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 378
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+I+ G +T+N +++ LC GK+D+AL L M+++
Sbjct: 379 MMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 418
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M G PN T T L EA E+L +K G DV
Sbjct: 190 CKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADV 249
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y ++ GFC G + EL +E + +G++ NVVT L+H L+
Sbjct: 250 VLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNA 309
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P +T+ +I LC G+ A+ LL LM E G+ PS Y+ L+ L
Sbjct: 310 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGL 364
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML--MNVKNDGLKP 49
C + +A K++ M + G +V TY L EA ++ M + L+P
Sbjct: 365 CKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEP 424
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
+V+T+ ++ G CK GR + +++ + +++G N+VT L
Sbjct: 425 NVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELW 484
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+D+G +P + T++ +I C + ++ A L M HG P+ Y+TL+ L
Sbjct: 485 KQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 541
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + D G+ PN TY+IL A + ++ GL P ++ Y +M
Sbjct: 479 EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 538
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
CK G + L E P++++ + ++++G
Sbjct: 539 ASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR 598
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+ +I L +G++D+A L M G P +YD+L+K L +
Sbjct: 599 PDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSK 649
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA ++ + + PD+ +Y +++G CK + E + LL E G PN VT
Sbjct: 160 VFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTT 219
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + LC G++D+A+ LL M + G LY TLI
Sbjct: 220 L------------------MDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLI 256
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA ++++ M P V TYT L +AY ++ ++ G+ PD
Sbjct: 277 FCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPD 336
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+ TY ++DG CK G+ E ELL +E+ P+VVT L N
Sbjct: 337 LVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLE 396
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P +TFN +I C GK+D+ +L LM E P Y TLI
Sbjct: 397 MMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLI 449
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA++V+D M G P + Y ++ EA +ML + G +P++
Sbjct: 482 CSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNL 541
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY+ +++G CK R + + +L+ +E+G P+V T L
Sbjct: 542 YTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKT 601
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ D G P + +N +I C G ++KA+ ++ LM E G P Y +L++ L +
Sbjct: 602 MRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +N E K+++ M + G P+ +Y + EA ++L + PDV
Sbjct: 208 CKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDV 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY ++MDGFCKV + +E LL + + R P V+T L +
Sbjct: 268 VTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMED 327
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+N ++ LC GK+++A LL +M E P Y L+ L
Sbjct: 328 MFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGL 382
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C AR V+ M + P+V TYT L EA +++ +K GL PD
Sbjct: 138 CKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDT 197
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVIDIGHI--- 101
Y A+++G CK + EV +LL E +E G P+ V L + G I
Sbjct: 198 VAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEK 257
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N+++ C V K+D+A LL M P+ Y TLI
Sbjct: 258 MIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLI 309
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +AR +++ M + G PN+ T+ + E +++L +K PDV
Sbjct: 383 CKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDV 442
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI 98
TY+ ++DG+CK R + +L G++P+ + + V+D+
Sbjct: 443 VTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDL 496
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P + + +I LC V + D+AL +L +M E G P+ Y LI L
Sbjct: 497 MTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGL 551
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE Y +D KP TY A++ GF + G S V+E+ NE + R +P+V+T
Sbjct: 6 LEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVIT---- 61
Query: 93 HNVI-----DIGHI--------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
HN I IG + P T+ +I LC +ID+A LL M +
Sbjct: 62 HNTILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK 121
Query: 134 GKIPSRTLYDTLIKKL 149
P +Y+ LI L
Sbjct: 122 DCHPDAAVYNCLIAGL 137
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P TY IL EAY++L + PD Y ++ G CK+G+ + +
Sbjct: 90 PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNV 149
Query: 74 LNEAIERGVTPNVVTLIHL------HNVID-----------IGHIPRTITFNNVIQALCG 116
L +ER P+V+T L N +D G P T+ +N ++ LC
Sbjct: 150 LKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCK 209
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++ LL M E G+ P Y+T++ L
Sbjct: 210 QNQLEEVSKLLEEMVEAGREPDTFSYNTVVACL 242
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 28/160 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN + +++ D M G NV TY+ L EA +L + G+ PD
Sbjct: 113 FCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD 172
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TYT ++DG CK GR+ M+LLN +E+G P+ VT L+ L
Sbjct: 173 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 232
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+I+ G +T+N +++ LC GK+D+AL L M+++
Sbjct: 233 MMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 272
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M G PN T T L EA E+L +K G DV
Sbjct: 44 CKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADV 103
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y ++ GFC G + EL +E + +G++ NVVT L+H L+
Sbjct: 104 VLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNA 163
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G P +T+ +I LC G+ A+ LL LM E G+ PS Y+ L+ L ++
Sbjct: 164 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKE 221
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + D G+ PN TY+IL A + ++ GL P ++ Y +M
Sbjct: 333 EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 392
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
CK G + L E P++++ + ++++G
Sbjct: 393 ASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR 452
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+ +I L +G++D+A L M G P +YD+L+K L +
Sbjct: 453 PDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSK 503
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNV--KNDGLKP 49
C + +A K++ M + G +V TY L EA ++ ++ + L+P
Sbjct: 219 CKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEP 278
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
+V+T+ ++ G CK GR + +++ + +++G N+VT L
Sbjct: 279 NVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELW 338
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V+D+G +P + T++ +I C + ++ A L M HG P+ Y+TL+ L ++
Sbjct: 339 KQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKE 398
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA ++ + + PD+ +Y +++G CK + E + LL E G PN
Sbjct: 14 VFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPN------ 67
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++T ++ LC G++D+A+ LL M + G LY TLI
Sbjct: 68 ------------SVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLI 110
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 81.6 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 30/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA K+++ MFD+G P V T TI+ A + +++ G +P+
Sbjct: 275 WCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPN 334
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--LIHLHNVIDIGHIPRTI--- 105
V+TY A++ GFC G+ + M LL++ E GV P+VVT L+ ID GHI
Sbjct: 335 VWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCID-GHIGSAFRLL 393
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I ALC GK+D+A L + G P+ ++T+I L
Sbjct: 394 RLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN ++A ++D M + G P+V TY +L A+ +L ++ +GL D
Sbjct: 345 FCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAAD 404
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY ++D CK G+ +E L + RG+ PN ++TFN V
Sbjct: 405 QYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPN------------------SVTFNTV 446
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC GK D A L M G P Y I+ L
Sbjct: 447 INGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENL 485
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI--- 90
E ML +K G +P Y A++D +C+ ++ E ++LNE + G+ P VVT
Sbjct: 248 EGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVV 307
Query: 91 -------HLHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + + G P T+N ++Q C GK+ KA+ LL M E G
Sbjct: 308 NAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVE 367
Query: 137 PSRTLYDTLIK 147
P Y+ LI+
Sbjct: 368 PDVVTYNLLIR 378
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 33/155 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A++ + M +G+ P+ T+ L A+++ + G D
Sbjct: 140 CRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDA 199
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y A+++GFC+ GR +E +EL E + P T ++
Sbjct: 200 VSYAALIEGFCEAGRIDEALELFREMTQ----------------------PDMYTHAALV 237
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ LC G+ ++ L +L M E G P+ Y L+
Sbjct: 238 KGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALV 272
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C EA + D + G PN T+ T++ A L N+ + G PD
Sbjct: 416 CKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDT 475
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
YTY+ ++ CK S E + ++E +++ V P+ V + N
Sbjct: 476 YTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQ 535
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P +T+ ++A C G++D+A ++ M + I Y+TLI
Sbjct: 536 MVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLI 587
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + + ++ M G PNV TYT L A E+ ++ GL+P+
Sbjct: 322 FCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPN 381
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TYT ++DGFC+ G NE ++L+E I G +P+VVT L+H L
Sbjct: 382 ERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILR 441
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G P ++++ VI C ++ KA + M E G +P Y +LI+ L
Sbjct: 442 GMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGL 497
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + A ++ D M G PN TYT L EAY++L + G P
Sbjct: 356 CMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSP 415
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
V TY A++ G+C +GR E + +L +ERG+ P+VV+ +
Sbjct: 416 SVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMK 475
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G +P T+T++++IQ LC K+ +A L M G P Y +LI
Sbjct: 476 EEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLI 529
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA KV+ M +G+ P+V TY L EA +L + GL PD
Sbjct: 392 FCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPD 451
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V +Y+ V+ GFC+ + ++ E +E+GV P+ VT L
Sbjct: 452 VVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFR 511
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G P +T+ ++I A C G++ KAL L M + G +P Y LI L+++
Sbjct: 512 EMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKK 570
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 34/174 (19%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N D+ +A +V M NG PNV TY ++ + + ++ +G+ P+V
Sbjct: 184 NHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVV 243
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID--------------- 97
TY ++D CK + E M LL GV N LI ++VI+
Sbjct: 244 TYNTLIDASCKKKKVKEAMALLRAMAVGGVAAN---LISYNSVINGLCGKGRMSEVGELV 300
Query: 98 -----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P +T+N ++ C G + + L+LL M G P+ Y TLI
Sbjct: 301 EEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLI 354
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K EA ++ M G N+ +Y + E E++ ++ GL PD
Sbjct: 253 CKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDE 312
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIPRTI----- 105
TY +++GFCK G ++ + LL+E + +G++PNVVT L N + G++ R +
Sbjct: 313 VTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQ 372
Query: 106 -----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ +I C G +++A +L M G PS Y+ L+
Sbjct: 373 MRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + + +A ++ + M + G P+ TY+ ++EA+++ + GL PD
Sbjct: 462 FCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPD 521
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT++++ +C G ++ + L +E ++RG P+ +T++ +
Sbjct: 522 EVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPD------------------NVTYSVL 563
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I L + A LL ++ +P Y+TLI+
Sbjct: 564 INGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIE 600
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN-----EVMELLNEAIERGVTPNVVT 88
+A +L G P V +Y AV+D + SN + + + + GV+PNV T
Sbjct: 150 KALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYT 209
Query: 89 L-IHLHNVIDIGHI----------------PRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ + V+ G + P +T+N +I A C K+ +A+ LL M
Sbjct: 210 YNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMA 269
Query: 132 EHGKIPSRTLYDTLIKKL 149
G + Y+++I L
Sbjct: 270 VGGVAANLISYNSVINGL 287
Score = 35.0 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 29/122 (23%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A ++ D M G+ P+ TY++L A +L+ + + PD
Sbjct: 532 YCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPD 591
Query: 51 VYTYTAVMD---------------GFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHL 92
TY +++ GFC G NE + ++R PN +IH
Sbjct: 592 DVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHG 651
Query: 93 HN 94
H+
Sbjct: 652 HS 653
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 20/158 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N F +AR++ M G P+ TY ++ EA +++ + DG PDV
Sbjct: 369 CMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDV 428
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY VMDG CK R E + L NE G TPN + HN I +G + + I
Sbjct: 429 VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRS----HNTIILG-----LCQQSKI 479
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C GK+D+A LL M + G +P Y TLI L
Sbjct: 480 DQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 517
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
EA+ +L + +DG PDV TY+ ++ G C + R ++ LL + ++R P VV TLI
Sbjct: 490 EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLI 549
Query: 91 H--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H L ++ G P +T+N ++ C G+ ++A LL M G
Sbjct: 550 HGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLA 609
Query: 137 PSRTLYDTLIKKL 149
P+ Y L+ L
Sbjct: 610 PNVVTYTALVSGL 622
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ + M + P+ +Y IL +A + + + G+ P
Sbjct: 299 CQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPST 358
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
YT+++ G C ++ EL + RG P+ VT +I +
Sbjct: 359 VAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKK 418
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I+ GH+P +T+N V+ LC ++++ALLL M G P+R ++T+I L QQ
Sbjct: 419 MIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 476
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+AR +++ M P V T L EA E+L + + G PDV TY ++
Sbjct: 525 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 584
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
G C+ G++ ELL++ + RG+ PNVVT L + G
Sbjct: 585 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 644
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+ +I C G++D L L M G P +Y TL +L
Sbjct: 645 PNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 692
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR+++ M G PNV TYT L EA + +K+ G P+
Sbjct: 587 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 646
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
++TYTA++ GFC G+ + ++L E + G++P+ V
Sbjct: 647 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 683
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKND-GLKPD 50
+CN FEA K+ M + + P Y +L EA + ++ V D G PD
Sbjct: 20 WCNVGRTFEAVKIFSLM-EECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPD 78
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------LHNVID 97
+T+T ++ G CK G+ +E +++E R + P T L H +++
Sbjct: 79 SFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLE 138
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
I + + +N V+ ALC ++D AL L M E +IP
Sbjct: 139 IMPVANSSAYNIVVVALCKAARVDDALELARTMSEK-RIP 177
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 20/100 (20%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVME------------------LLNEAIERGVTPNVV 87
G+ P +T+V+ G+C VGR+ E ++ L++ +R T V
Sbjct: 5 GIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVK 64
Query: 88 TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ + ++D G P + TF ++ LC GK+D+A L++
Sbjct: 65 KMVQV--MVDRGCFPDSFTFTTILCGLCKAGKMDEAELVM 102
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+L + ++ PD +Y V+DG CK GR E + L + + + + L
Sbjct: 230 KARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLR 289
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N VI LC +ID+A+ + M E P Y LI L
Sbjct: 290 G------------YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGL 333
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 33/174 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML--MNVKNDGLKP 49
C EA V+D M P T + L A+++L M V N
Sbjct: 90 CKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPVANSS--- 146
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHI------- 101
Y V+ CK R ++ +EL E+ + +L L ++D G I
Sbjct: 147 ---AYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVY 203
Query: 102 ------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T N +++ C G++DKA LL M + P Y T++ L
Sbjct: 204 RENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGL 257
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++ M ++G P+V TYT+L EA + + +G++P+
Sbjct: 270 FCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPN 329
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VID 97
VYTYT ++D FCKVG+ +E ME+L+ +E+G+ +VV L + V+D
Sbjct: 330 VYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLD 389
Query: 98 IGHI----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ P + T+N +I C +D+A+ LL MYE+ P+ Y+TLI L
Sbjct: 390 SMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGL 445
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ +A KV + M G N +YT L EA E+ +K DG PD
Sbjct: 235 YCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPD 294
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT ++ FC+VG+ E ++ E +E G+ PNV T+ +
Sbjct: 295 VPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVY------------------TYTVL 336
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C VGK+D+ + +L M E G + S ++ LI
Sbjct: 337 IDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI 372
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 80/208 (38%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK-- 48
+C EA K + M +NG PNV TYT+L E EML + GL
Sbjct: 305 FCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSS 364
Query: 49 ---------------------------------PDVYTYTAVMDGFCKVGRSNEVMELLN 75
P+ TY ++ GFC+ + M LLN
Sbjct: 365 VVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLN 424
Query: 76 EAIERGVTPNVV---TLIH-------------LHNV-IDIGHIPRTITFNNVIQALCGVG 118
+ E ++PN+V TLIH LH++ I G +P TF I LC +G
Sbjct: 425 KMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMG 484
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K+++A + + E + LY LI
Sbjct: 485 KVEQAHQVFESLKEKHAEANEFLYTALI 512
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++D M P V TYTIL A L + + G +P+V TYTA +
Sbjct: 558 DAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFI 617
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+C+ GR E E++ + E G+ ++D + ++ ++ A +G
Sbjct: 618 KAYCRQGRLLEAEEMVVKIKEEGI------------LLD------SFIYDVLVNAYGCIG 659
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D A +L M++ G PSR Y L+K L
Sbjct: 660 QLDSAFGVLIRMFDTGCEPSRQTYSILLKHL 690
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 54/198 (27%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYT 53
++DF A +D M +G PNV TYT +LEA EM++ +K +G+ D +
Sbjct: 588 ESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFI 647
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL----------------- 92
Y +++ + +G+ + +L + G P+ T L HL
Sbjct: 648 YDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNST 707
Query: 93 ----------------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+++ G +P T++ +I+ LC V + A L M
Sbjct: 708 NISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHM 767
Query: 131 YEHGKIPSRTLYDTLIKK 148
E G PS ++++L+
Sbjct: 768 KESGISPSENIHNSLLSS 785
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EAR V++ + + + +VT+Y L E + ++ NDG++P++ ++ ++
Sbjct: 138 EARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMV 197
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI----GHI 101
+ CK+G ++ G + T L + V +I G +
Sbjct: 198 NAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCL 257
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ N+I C VGKID+AL L F M E G P Y L+
Sbjct: 258 RNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLV 302
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
A ++ M +G+ P+ T+ + +A+++ ++K + + + YTA++
Sbjct: 453 SAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALI 512
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG+CK + ++ L + G PN +ITFN ++ L G
Sbjct: 513 DGYCKAEKFSDAHLLFKRMLFEGCFPN------------------SITFNVLLDGLRKEG 554
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K++ A+ L+ +M + P+ Y LI+++
Sbjct: 555 KVEDAMSLVDVMGKFDAKPTVHTYTILIEEI 585
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 55/180 (30%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKN-------------- 44
A V+ MFD G P+ TY+IL E + +N N
Sbjct: 663 SAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADF 722
Query: 45 ------------DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
G P+V TY+ ++ G CKV + L N E G++P+ IH
Sbjct: 723 EIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPS--ENIH- 779
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N+++ + C +G ++AL LL M E+ + Y L+ L +Q
Sbjct: 780 ---------------NSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQ 824
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + + G++PD
Sbjct: 146 FCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
VYTY+ +++G CK + +E EL NE ++RG+ PN V TLI +H
Sbjct: 206 VYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P IT+N +I LC G + + L+ M +G P + Y TLI
Sbjct: 266 QMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLI 318
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M G+ P++ TY L + ++ + +GLKPD
Sbjct: 251 HCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
TYT ++DG CK G E I+ + + V L
Sbjct: 311 KITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ +I C G + A LL M G +P
Sbjct: 371 EMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 46/132 (34%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D + R +ID M NG P+ TYT L
Sbjct: 287 CKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDN 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +M + + GLKPD TYT +++ FCK G LL E
Sbjct: 347 VAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKE 406
Query: 77 AIERGVTPNVVT 88
G P VVT
Sbjct: 407 MQRDGHVPCVVT 418
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V ++ + G +Y + VM FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLV--------WDFYKEILECGYPASLYFFNIVMHRFCKEGEM 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 153 RRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D+A L M + G +P+ + TLI
Sbjct: 213 INGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLI 248
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 31/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+ V D M +G+ PN TY L +A + + G PDV
Sbjct: 61 CRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDV 120
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TY ++ GFCKVG+ +E +++ + A++RG P+VVT LI+ L
Sbjct: 121 VTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQR 180
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ +P +T+N+++ LC G++D+A +L+ + G P+ Y TLI L ++
Sbjct: 181 MVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRE 235
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+ + GY P V TY IL EA+E+ + GL+PD TYT +
Sbjct: 276 EALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 335
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
DG CK GR + + +L + E+G P+VV+ + L + G
Sbjct: 336 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCS 395
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P I+FN +I C GK KA+ M + G P+ Y+ L+ L
Sbjct: 396 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 443
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ M G PN ++ L +A + G+KP V
Sbjct: 374 CKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTV 433
Query: 52 YTYTAVMDGFCKV---GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI---------- 98
TY ++DG CK GR E + L + IE+G P+VVT L + +
Sbjct: 434 VTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRL 493
Query: 99 -------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G IP T+N++I LCG+ K+D+AL L M E G +P Y T+I L +
Sbjct: 494 LGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCK 553
Query: 152 Q 152
Q
Sbjct: 554 Q 554
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 75/178 (42%), Gaps = 31/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C + +A M G P V TY IL EA + + G
Sbjct: 409 CRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV 468
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV------ 95
PDV TY+A++DG K G+ ++ LL +G PNV T L L V
Sbjct: 469 PDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALEL 528
Query: 96 ----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P TIT+ +I ALC +DKAL L E G +P+ +Y +LI L
Sbjct: 529 FVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGL 586
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
AR++++ M NG P++ +Y L EA ++ +V G +P+V TY ++
Sbjct: 241 SARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILI 300
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
DG K R NE EL + ++ G+ P+ +T L+ L ++ + G +
Sbjct: 301 DGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCV 360
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P ++ N VI LC ++D+A +LL M G P+ ++TLI
Sbjct: 361 PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 405
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + D M + G P+V TY+ L +A +L ++ G P+VYTY +++
Sbjct: 454 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 513
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
G C + + +E +EL +E+G P+ +T L ++ G +
Sbjct: 514 SGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVV 573
Query: 102 PRTITFNNVIQALCGVGKIDKALLLL 127
P + + ++I LC V ++D+AL LL
Sbjct: 574 PTSGMYFSLIDGLCAVARVDEALKLL 599
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA K+ D G+ P+V TY L EA +L + ++ L PD
Sbjct: 130 FCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPD 189
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---------------L 92
V TY ++++G CK GR +E L+ +++G +PNV+ TLI L
Sbjct: 190 VVTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRRLESARQLL 246
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +++N +I L + +AL L + G P Y+ LI L
Sbjct: 247 EKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGL 303
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C + EA++++ M P+V TY L E M + + G P+V T
Sbjct: 165 FCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVIT 224
Query: 54 YTAVMDGFCK-VGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNV 95
Y+ ++ G C+ + R +LL + + G P++V+ LIH +V
Sbjct: 225 YSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSV 284
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G+ P T+N +I L ++++A L + +HG P Y I L
Sbjct: 285 LRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 338
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
D+ T+ + G C+ R + + + + G PN +T L
Sbjct: 49 DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALY 108
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G+ P +T+N ++ C VGK+D+AL + + G +P Y+ LI
Sbjct: 109 ERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALI 162
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + +A+ + M G N TYT+L + +EM ++ DG+ P++
Sbjct: 209 CKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNL 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI 98
YTY VM+ CK GR+ + +L +E ERGV+ N+VT L + V+D
Sbjct: 269 YTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I CGVGK+ KAL L + G PS Y+ L+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA KV+D M +G +PN+ TY L +A + ++K+ GL P +
Sbjct: 314 CREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY ++ GFCK G ++ +++ E ERG+ P+ +T L +
Sbjct: 374 VTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSP 433
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++G P T++ +I C G++++A L LM P++ +Y+T++
Sbjct: 434 MEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMV 485
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A K+ D M + G N+ TY L EA +++ +K+DG+ P+
Sbjct: 278 HCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPN 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++DGFC VG+ + + L + RG++P++V T+N +
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLV------------------TYNIL 379
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ C G A ++ M E G PS+ Y LI
Sbjct: 380 VSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILI 415
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D A KV+ M + G P+ TYTIL +A ++ ++ GL PD
Sbjct: 383 FCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPD 442
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+TY+ ++ GFC G+ NE L + + + PN + +N +
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPN------------------KVIYNTM 484
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C G +AL L M E P+ Y +I+ L
Sbjct: 485 VLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVL 523
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I +++++L+ ++ G P+V YT ++DG CK G + +L E + G+ N T
Sbjct: 179 IEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTV 238
Query: 89 LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LIH + + G P T+N V+ C G+ A L M E G
Sbjct: 239 LIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERG 298
Query: 135 KIPSRTLYDTLIKKL 149
+ Y+TLI L
Sbjct: 299 VSCNIVTYNTLIGGL 313
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Query: 18 MFDNGYHP------NVTTYTI----LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
M D G+ P N+ T+ + + N + DVY++ V+ G C+ G
Sbjct: 120 MVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKGCCEAGEI 179
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ +LL E E G +PNVV + +I C G+I+KA L
Sbjct: 180 EKSFDLLVELREFGFSPNVV------------------IYTTLIDGCCKRGEIEKAKDLF 221
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
F M + G + + Y LI L
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGL 243
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 42/187 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A +V+D +P+V TYTIL +A ++L ++N G KPDV
Sbjct: 227 CDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDV 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G CK GR +E ++ LN G PNV+T HN+I
Sbjct: 287 VTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT----HNIILRSMCSTGRWMDAEK 342
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---- 146
G P +TFN +I LC G + +A+ +L M HG P+ Y+ L+
Sbjct: 343 LLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFC 402
Query: 147 --KKLDQ 151
KK+D+
Sbjct: 403 KEKKMDR 409
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + +D M G +P++ TY L A E+L + + G P
Sbjct: 401 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 460
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG KVG++ ++LL+E +G+ P+++T L H
Sbjct: 461 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 520
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ +G P IT+N+++ LC + D+A+ L M P+ Y LI+
Sbjct: 521 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 574
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A K++ M G P+V T+ IL A ++L + G P+
Sbjct: 332 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNS 391
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y ++ GFCK + + +E L+ + RG P++VT + L+
Sbjct: 392 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 451
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P IT+N VI L VGK ++A+ LL M G P Y +L+ L ++
Sbjct: 452 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSRE 509
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C +A V++ + +G P+V TY +L E L + + PDV T
Sbjct: 159 FCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVT 218
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
Y ++ C G+ + ME+L+ +++ P+V+T LI L +
Sbjct: 219 YNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 278
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+N +I +C G++D+A+ L M +G P+ ++ +++ +
Sbjct: 279 NKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 331
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 28/135 (20%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE---VMELLNEAIERGVTPNVVTLI 90
+ ++ L ++ G PD+ T+++ GFC++G++ + VME+L ++ G P+V+T
Sbjct: 132 DGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS---GAVPDVIT-- 186
Query: 91 HLHNVIDIGH------------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+NV+ G+ P +T+N +++ LC GK+ +A+ +L +
Sbjct: 187 --YNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQ 244
Query: 133 HGKIPSRTLYDTLIK 147
P Y LI+
Sbjct: 245 KECYPDVITYTILIE 259
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 46/119 (38%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
A K++D M G P++ TY+ L EA + +++ G++P+ TY ++M
Sbjct: 479 RAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIM 538
Query: 59 DGFCKV-----------------------------------GRSNEVMELLNEAIERGV 82
G CK G + E ++LLNE RG+
Sbjct: 539 LGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 28/151 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A ++I M G+ P+ +TY+ + +A+ + +K+ G+ P
Sbjct: 429 CLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIP 488
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCKVG + +E G +P+VVT L+H
Sbjct: 489 DVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIF 548
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
H ++D G P TIT++ ++ LC G+ KA
Sbjct: 549 HRMVDAGCAPNTITYSALVDGLCKAGESQKA 579
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +AR D M G P+V TYT L +A ++ + + G P+
Sbjct: 500 FCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPN 559
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI----------------ERGVTPNVVT------ 88
TY+A++DG CK G S + E+ + I + PNVVT
Sbjct: 560 TITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALID 619
Query: 89 -LIHLHNVIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L H V+D + P I ++ +I C VGK+D A + F M + G +P
Sbjct: 620 GLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLP 679
Query: 138 SRTLYDTLIKKL 149
+ Y +LI +
Sbjct: 680 TVHTYTSLIDAM 691
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A++V M GY P V TYT L A ++L + P+
Sbjct: 656 FCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPN 715
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYTA++DG C++G + ++LL+ +RG PNVV T+ ++
Sbjct: 716 VVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVV------------------TYTSL 757
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L GK+D +L L M G P+ Y LI
Sbjct: 758 IDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLI 793
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 16 DYMFDNGYH-----PNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
D+ F+ G H PNV TY +++A E+L + ++G +P+ Y A++D
Sbjct: 596 DFYFE-GEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALID 654
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIP 102
GFCKVG+ + E+ + G P V T L +++ P
Sbjct: 655 GFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTP 714
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ +I LC +G+ KAL LL +M + G P+ Y +LI L
Sbjct: 715 NVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGL 761
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 34/176 (19%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTA 56
F EA + M N PNV TY T+L + ++ + N+G P+ + +
Sbjct: 290 FDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNS 349
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPN-VVTLIHLHNVIDIGHIP------------- 102
++ +C +LLN G P VV I + ++ +P
Sbjct: 350 LVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYE 409
Query: 103 ---------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ N + LCG+GK DKA ++ LM G +P + Y +I L
Sbjct: 410 EMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFL 465
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
+L +++ G+ Y ++D F K GR + +EL E +E + N+ +
Sbjct: 841 LLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITS--------- 891
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ ++IQALC +++KA L + G +P + + LIK L
Sbjct: 892 ------KDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGL 937
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 41/165 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------EAYEMLMN 41
YCN D+ A K+++ M G P Y I + YE ++
Sbjct: 354 YCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLA 413
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
K + + + G K ++ ++++L+ G +
Sbjct: 414 SSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRK---------------------GFV 452
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T T++ VI LC K++KA LL M G IP Y LI
Sbjct: 453 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILI 497
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 42/187 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A +V+D +P+V TYTIL +A ++L ++N G KPDV
Sbjct: 170 CDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDV 229
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G CK GR +E ++ LN G PNV+T HN+I
Sbjct: 230 VTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT----HNIILRSMCSTGRWMDAEK 285
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---- 146
G P +TFN +I LC G + +A+ +L M HG P+ Y+ L+
Sbjct: 286 LLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFC 345
Query: 147 --KKLDQ 151
KK+D+
Sbjct: 346 KEKKMDR 352
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + +D M G +P++ TY L A E+L + + G P
Sbjct: 344 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 403
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG KVG++ ++LL+E +G+ P+++T L H
Sbjct: 404 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 463
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ +G P IT+N+++ LC + D+A+ L M P+ Y LI+
Sbjct: 464 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 517
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A K++ M G P+V T+ IL A ++L + G P+
Sbjct: 275 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNS 334
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y ++ GFCK + + +E L+ + RG P++VT + L+
Sbjct: 335 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 394
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P IT+N VI L VGK ++A+ LL M G P Y +L+ L ++
Sbjct: 395 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSRE 452
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C +A V++ + +G P+V TY +L E L + + PDV T
Sbjct: 102 FCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVT 161
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
Y ++ C G+ + ME+L+ +++ P+V+T LI L +
Sbjct: 162 YNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 221
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+N +I +C G++D+A+ L M +G P+ ++ +++ +
Sbjct: 222 NKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 274
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 28/135 (20%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE---VMELLNEAIERGVTPNVVTLI 90
+ ++ L ++ G PD+ T+++ GFC++G++ + VME+L ++ G P+V+T
Sbjct: 75 DGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS---GAVPDVIT-- 129
Query: 91 HLHNVIDIGHI------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+NV+ G+ P +T+N +++ LC GK+ +A+ +L +
Sbjct: 130 --YNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQ 187
Query: 133 HGKIPSRTLYDTLIK 147
P Y LI+
Sbjct: 188 KECYPDVITYTILIE 202
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 46/119 (38%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
A K++D M G P++ TY+ L EA + +++ G++P+ TY ++M
Sbjct: 422 RAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIM 481
Query: 59 DGFCKV-----------------------------------GRSNEVMELLNEAIERGV 82
G CK G + E ++LLNE RG+
Sbjct: 482 LGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C A +++ M + G PNV Y+ I EA E L + N G+ P+V
Sbjct: 93 CKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNV 152
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY++++ GFC +GRSNE L + +ER V P+ VT L
Sbjct: 153 VTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFET 212
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ G P T+N ++ C ++D+A L +M G PS Y+ LIK
Sbjct: 213 MIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIK 265
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C+ N + F A V+ MF G PN T++ I++A ++ + G +P
Sbjct: 21 CHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEP 80
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HL 92
DV TY+ +++G CK+G + ++LL + E+G PNVV T+I L
Sbjct: 81 DVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFL 140
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ G P +T+++++ C +G+ ++A L M E +P ++ L+ L ++
Sbjct: 141 SEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKE 200
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+++ EA+K+ + M G P+V +Y IL EA +L + + L PD
Sbjct: 232 YCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPD 291
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY+ +M GFC+ GR + +LL E G+ P+++T I L + GH+
Sbjct: 292 TVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLK 351
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + +IQ +C GK++ A L ++ G P Y +I L
Sbjct: 352 AMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGL 407
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
EA+ V + M + G PNV TY L EA ++ + G P V +Y +
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNIL 263
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGH 100
+ G CK GR +E LL E + +TP+ VT L + G
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P +T++ V+ LC G +D+A LL M E P+ +Y LI+ +
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGM 372
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA+ ++ M P+ TY+ L +A ++L +++ GL PD
Sbjct: 267 HCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPD 326
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHI-------- 101
+ TY+ V+DG CK G +E ELL E + PN+ + I + + + G +
Sbjct: 327 LMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFS 386
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +T+ +I L G ++A L M HG +P+ Y+ +I+
Sbjct: 387 NLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQ 440
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 47 LKPDVYTYTAVMDGFCKVGRS--NEVMELLNEAIERGVTPNVVTLIHLHN---------- 94
++PDVYT T +++ FC + +L + G+ PN VT L N
Sbjct: 6 IRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIID 65
Query: 95 -------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ +G+ P IT++ +I LC +G A+ LL M E G P+ +Y T+I
Sbjct: 66 AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125
Query: 148 KL 149
L
Sbjct: 126 SL 127
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN AR++ +F G P+V TYT++ EA E+ ++ G P+
Sbjct: 373 CNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNS 432
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV 95
TY ++ GF + G ++ L+ E + RG + + T L ++
Sbjct: 433 CTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDL 476
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N EA+KV+D M D G P V +Y IL EA +L+ + L PD
Sbjct: 347 YCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPD 406
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY+ +M G C+VGR E + L E G+ P++ +T++ +
Sbjct: 407 TVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDL------------------MTYSTL 448
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC G +D+AL LL M E P LY+ LI+ +
Sbjct: 449 LDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGM 487
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C N A V+ MF G P+ T+ L EA + + G +P
Sbjct: 136 CLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQP 195
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV------------TLIH-----L 92
DV +Y+ V++G CK G ++ ++LL + E+G PN+V TL++ L
Sbjct: 196 DVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLL 255
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P +T++ ++ C +G +++A +L M +P+ + L+ L
Sbjct: 256 SEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGL 312
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ EA + + M PN T+TIL EA + + G +P+
Sbjct: 277 FCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPN 336
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
YTY A+MDG+C + +E ++L+ +++G P ++H +N++ G+
Sbjct: 337 AYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAP----VVHSYNILINGYCKRRRLDEAK 392
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+T++ ++Q LC VG+ +AL L M G +P Y TL+ L
Sbjct: 393 SLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGL 452
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +++ M + G PN+ YT + +A ++L + + G+ PDV
Sbjct: 208 CKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDV 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY+ ++ GFC +G NE L NE + R V PN VT L
Sbjct: 268 VTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEA 327
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P T+N ++ C ++D+A +L +M + G P Y+ LI
Sbjct: 328 MTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILI 379
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+++ +F +G P + TYTI+ EAYE+ +++DG P+ +Y ++
Sbjct: 496 AKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQ 555
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
GF + S+ + L++E + + + + T
Sbjct: 556 GFLQNQDSSTAIRLIDEMVGKRFSADSSTF 585
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ +VY+ +++ C++ + +L + + G+ P+ +T L N
Sbjct: 122 GVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEA 181
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ GH P I+++ VI LC G AL LL M E G P+ Y T+I
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241
Query: 149 L 149
L
Sbjct: 242 L 242
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K++ M ++ P++ Y IL A E+ + DG++P +
Sbjct: 453 CKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTI 512
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
TYT ++ G K G S+E EL + + G PN + +NVI G +
Sbjct: 513 RTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCS----YNVIIQGFL 558
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------- 96
+P V + + K + + V+ L N+ GVT NV +L L N +
Sbjct: 89 RPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAIS 148
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G P ITFN +I C G+I +A+ L M G P Y T+I L
Sbjct: 149 VLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGL 207
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ +A + D M G PNV TY I+ A +L +K +GLK D
Sbjct: 422 FCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLD 481
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TY ++ GF + G+ L NE +E G++PNVV T+N +
Sbjct: 482 TWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVV------------------TYNAI 523
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I V K+D AL L + M E G +PS Y+ +I +
Sbjct: 524 INGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSK 564
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A ++ D M +G PN TY+ L EA +ML + + G++P
Sbjct: 247 HCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPT 306
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+ YT + C GRS E ++LL + +RG PNV T L H
Sbjct: 307 VHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYH 366
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G +P +T++ +I L G+ + AL + M H +P+ Y+ +IK
Sbjct: 367 KMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIK 420
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CNK EA ++ ++F G P+ TYT L A+EM + DG P+
Sbjct: 213 CNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNS 272
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHI--------- 101
TY+A+++G C GR E M++L E I++G+ P V I + ++ D G
Sbjct: 273 VTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGK 332
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+ +I L GK + A+ + M G +P+ Y LI +L
Sbjct: 333 MKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQL 387
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M ++G P+ TY ++ EA + GL P+V TYT+ +DG CK GR
Sbjct: 543 MVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGR 602
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDIGHIPRTITFNNVIQA 113
++ ++ +E +R PN+ T L ++D G P T+ +++
Sbjct: 603 TSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRG 662
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LCG G+ +A L+ M + G PS +Y L+
Sbjct: 663 LCGKGRCYEADQLVESMKKKGLQPSEEIYRALL 695
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + + M ++G PNV TY + +A + + G P TY ++
Sbjct: 501 AFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMIS 560
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIP 102
GF K R +E + +++G+ PNV+T H + + P
Sbjct: 561 GFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFP 620
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T++++I LC G+ + A LL + G P+ Y TL++ L
Sbjct: 621 NLCTYSSLIDGLCQEGQAEDAERLL----DDGCEPNVDTYTTLVRGL 663
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------- 92
N G++P+++T+ A++ C G+ E ++ G P+ T L
Sbjct: 195 NSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLD 254
Query: 93 ------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P ++T++ +I LC G++++A+ +L M + G P+ Y I
Sbjct: 255 LAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314
Query: 147 KKL 149
L
Sbjct: 315 VSL 317
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
+ + D+G PNV TYT L EA +++ ++K GL+P Y A++ G CK
Sbjct: 642 ERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKN 701
Query: 65 GRSNEVMELLNEAIERGVTP 84
+++ + + G P
Sbjct: 702 LEVESALKIFDSMVTTGFQP 721
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P TFN +I+ LC GK+ +A L++ ++ +G P Y +LI
Sbjct: 193 MLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLI 244
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C E + V D M G PN TY L +A + + G+ P
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNP 363
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VI 96
D+ +Y+ +++GFCK+ + +E M L E + + P+VVT L + ++
Sbjct: 364 DIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLV 423
Query: 97 DIGH---IPRTI-TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D H +P TI T+N+++ ALC + ++DKA+ LL + + G P+ Y LIK L Q
Sbjct: 424 DQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQS 483
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 37/179 (20%)
Query: 10 EARKVIDYMF---DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
E R +D + N PNV Y + EA+++ + + G+ PDV TY+
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYS 264
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VIDI---- 98
A++ GFC +G+ N+ ++L N+ I + P+V T L N V D+
Sbjct: 265 ALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL------IKKLDQ 151
G P +T+N+++ C V +++KA + M + G P Y + IKK D+
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDE 383
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTAVMD 59
A +++D M D G P + TY +IL+A +L +K+ G++P++YTY+ ++
Sbjct: 419 ALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIK 478
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C+ G+ + ++ + +G NV T+ +IQ C G
Sbjct: 479 GLCQSGKLEDARKVFEGLLVKGHNLNVD------------------TYTIMIQGFCVEGL 520
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++AL LL M ++G IP Y+ +I L
Sbjct: 521 FNEALALLSKMEDNGCIPDAKTYEIIILSL 550
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +ARKV + + G++ NV TYTI+ EA +L ++++G PD
Sbjct: 481 CQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDA 540
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNNV 110
TY ++ K ++ +LL E I RGV P + + D+ P+T+T +V
Sbjct: 541 KTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIAIWFQKKKEYDVSSEPKTLTEQSV 600
Query: 111 --IQALCGV 117
+A+ G+
Sbjct: 601 PKFKAMFGL 609
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 63/209 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C A V + GY P+ T+T L +A+ V G
Sbjct: 129 CFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHF 188
Query: 50 DVYTYTAVMDGFCKVGRS-----------------------------------NEVMELL 74
D +Y ++ G CKVG + NE +L
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLF 248
Query: 75 NEAIERGVTPNVVT----------LIHLHNVIDIGH-------IPRTITFNNVIQALCGV 117
+E I +G++P+VVT L L++ ID+ + P TFN ++ A C
Sbjct: 249 SEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKD 308
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK+ + + +M + G P+ Y++L+
Sbjct: 309 GKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P + + ++ K + V+ L + RG+ PN+V L N
Sbjct: 83 PPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSV 142
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
++ +G++P TITF +I+ LC G+I +A L
Sbjct: 143 FAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLF 177
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G+KP++ +++ FC++G + + ++ G P+ +T L
Sbjct: 115 GIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQA 174
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
V+ +G I++ +I LC VG+ AL LL + + P+ +Y+T+I
Sbjct: 175 FLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDS 234
Query: 149 L 149
+
Sbjct: 235 M 235
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+ +EA + M +G PNV Y L EA ++ ++ G P+V T
Sbjct: 327 RGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT 386
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI--------------- 98
Y+ ++DGF K G E N I G PNVVT + +V+
Sbjct: 387 YSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMT 446
Query: 99 --GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+TFN I+ LCG G+++ A+ LL M HG +P+ T Y+ L+ L
Sbjct: 447 LEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 29/174 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K+++ M +G PN+TTY L EA+ + ++ L+P++
Sbjct: 465 CGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNL 524
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TY V+ GF + G E ++L +A+ RG P+ +T +H G +
Sbjct: 525 VTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVER 584
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P IT+ ++I C I++A+ L G P+ ++ L++
Sbjct: 585 VSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVR 638
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 5 KNDFFEA-RKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDG------LKPDVYTYTAV 57
KND +A K+ M + G P+ TYT + + +D KP V Y A+
Sbjct: 191 KNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNAL 250
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI-GHIPRTI----------- 105
+DG CK GR ++LL E ++ GV PNVV+ + N + + G++
Sbjct: 251 IDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGC 310
Query: 106 -----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +I+ GK+ +AL L LM + G P+ Y+TLI L
Sbjct: 311 DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEA------YEML----MNVKNDGLKPDVYTYTAVM 58
+A K+ + + G P V Y +L+A ++M+ N+K DGL P+V+TY ++
Sbjct: 127 QALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILL 186
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-----------PRTIT 106
CK R + +L E +G P+ VT + ++ G I P
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPV 246
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C G+I+ A+ LL M ++G P+ Y +I L
Sbjct: 247 YNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSL 289
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A K++ M DNG PNV +Y+ + A+ + + G ++
Sbjct: 255 CKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANI 314
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+T+T ++ G G+ E ++L I+ G PNVV +N +I
Sbjct: 315 HTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVV------------------AYNTLI 356
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G +++AL + M G +P+ T Y LI
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ D A + + M +G PNV TYT + +A ++ + +G P+
Sbjct: 394 FAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPN 453
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
T+ + G C GR M+LL G PN+ T L
Sbjct: 454 TMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQ 513
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ ++ P +T+N V+ G + +AL L G P Y+T+I +Q
Sbjct: 514 EIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQ 572
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----- 92
+L +K DG+ + +++G+ +VG + + +++ E G P V HL
Sbjct: 96 ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155
Query: 93 ------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
N+ G IP T+N +++ALC ++D A L M G P
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215
Query: 141 LYDTLIKKL 149
Y T++ L
Sbjct: 216 TYTTMVSSL 224
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 25/162 (15%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
K D F +ID + +G +TT EA +M + G+ PDV Y+++MDG C+
Sbjct: 143 KGDVFTYGMIIDSLCKDG----MTT----EALDMFSEMIGAGILPDVVVYSSLMDGLCRF 194
Query: 65 GRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITF 107
GR E +E E RG++ +V T LIH L+ ++D G P TF
Sbjct: 195 GRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTF 254
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC GK+ +A +L LM+ GK P Y+TL+ L
Sbjct: 255 TILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGL 296
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 15 IDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
++ M D G+ P+ T+TIL EA ++L + + G +PD+ TY +M+G C
Sbjct: 239 LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCL 298
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
VG+ + +L +RG+ NV ++N +I C KID+A
Sbjct: 299 VGQLEDATKLFESLADRGIKLNV------------------FSYNILINGYCKDQKIDEA 340
Query: 124 LLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
L M G PS Y+TLI L Q
Sbjct: 341 FRLFEEMRPKGLKPSTVTYNTLIGALCQ 368
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+++++ M G P++ TY L +A ++ ++ + G+K +V
Sbjct: 262 CKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNV 321
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
++Y +++G+CK + +E L E +G+ P+ T+T+N +I
Sbjct: 322 FSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPS------------------TVTYNTLI 363
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
ALC G++ A L M G+ + Y L+ L
Sbjct: 364 GALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGL 401
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA ++ + M G P+ TY L A ++ + ++ G
Sbjct: 331 YCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK 390
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHI-------- 101
+ TY ++DG CK G E ++L + PN+ V I L + G +
Sbjct: 391 LSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFD 450
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P TI +N +I LC G + +A+ LL+ M E G +P ++ +I+ L
Sbjct: 451 EISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 506
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + + PN+ ++IL EA++ + +GL+PD
Sbjct: 402 CKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDT 461
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +++G C G +E ++LL + E+G P+ +ITFN +I
Sbjct: 462 IAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD------------------SITFNVII 503
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
Q L +I +A+ LL M P + L+
Sbjct: 504 QNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 36/181 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D EA +++ M D+ P+V TYT L +AYE+ + + L PD
Sbjct: 256 YCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD 315
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID------------- 97
V T+T+++DG C GR + +ELL E RG P + T + V+D
Sbjct: 316 VVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYT---YNCVVDGYCKANQVRKAEE 372
Query: 98 -------IGHIPRTITFNNVIQALCGVGKIDKALLLL-FLMYEHGKIP-SRTLYDTLIKK 148
G +P T+T+N ++ C G+ D+AL L L E G P S +Y ++
Sbjct: 373 LVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDA 432
Query: 149 L 149
L
Sbjct: 433 L 433
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 27/171 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D EA +++ M + G P V TY + EA+ + + +G P
Sbjct: 120 CKCERLD--EAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHP 177
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNVIDIG 99
D+ TYTA++ GFCK +ELL E RG TP++VT L + +DI
Sbjct: 178 DIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF 237
Query: 100 H----IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+N++I C G +D+A+ LL M + P Y TL+
Sbjct: 238 EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLM 288
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 31/176 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++ M G HP++ TYT L E+L V G PD
Sbjct: 154 FCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPD 213
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ TY+ V+DG CK GR + +++ E P +T + L
Sbjct: 214 IVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLG 270
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D P +T+ ++ A C +G++D A L M + P + +L+ L
Sbjct: 271 KMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 326
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LK 48
YC N +A +++ G+ PN TY IL +A + L + ++G
Sbjct: 361 YCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP 420
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH----------------- 91
V Y ++D C+ GR+++ ++ E I+RG P T
Sbjct: 421 TSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHEL 480
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
L +I GH P T + V+ A C G I KA
Sbjct: 481 LEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKA 512
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +V+ M + P+ TT T++ +A E++ + + G+ + TY+A++
Sbjct: 57 DAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALV 116
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG CK R +E + L+ ERG P VV T+N++I C
Sbjct: 117 DGLCKCERLDEAVALVETMAERGCAPTVV------------------TYNSIITGFCRAR 158
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+A + M G P Y LI
Sbjct: 159 RVDEAHGFMEQMVAEGCHPDIITYTALI 186
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI------------- 90
ND PD TYT ++ G K R + +++L E + P+ TL
Sbjct: 32 NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVD 91
Query: 91 ----HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ G IT++ ++ LC ++D+A+ L+ M E G P+ Y+++I
Sbjct: 92 DARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSII 151
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 25/150 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID ++ +G H + A+ + ++ G+ PD++TY ++DGFC GR +E L
Sbjct: 255 IIDGLWKDGRHSD--------AHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRL 306
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L E +ER + PNVVT L N ++ G IP TIT+N++I C
Sbjct: 307 LQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCK 366
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D A + ++M G P ++TLI
Sbjct: 367 QNRLDAAEHMFYVMATKGCSPDVFTFNTLI 396
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + EA++++ M + +PNV TY+ L EA E+ + G+ P+
Sbjct: 294 FCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPN 353
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY +++DGFCK R + + +G +P+V T LI LH
Sbjct: 354 TITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLH 413
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G + T T+N +I C VG ++ AL L M G P +TL+ L
Sbjct: 414 EMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 469
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ F EA ++ M G PN TY+ + EA +M ++ + PDV
Sbjct: 517 NEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVV 576
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI---------- 101
T+ ++ G+CK GR ++ +EL E RG+ + +T I L H +G+I
Sbjct: 577 TFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEM 636
Query: 102 ------PRTITFNNVIQALCGVGKIDKALLLL 127
P TIT +++ L ++ +A+ +L
Sbjct: 637 ISSGVYPDTITIRSMLTVLWSKEELKRAVAML 668
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 26/157 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYT 53
C+C+ + A + G+ P+V T++ L + +++ + +P+V T
Sbjct: 121 CFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVT 180
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113
+T +M+G C+ GR E + LL+ +E G+ PN IT+ ++
Sbjct: 181 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPN------------------QITYGTIVDG 222
Query: 114 LCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
+C +G AL LL M E I P+ +Y +I L
Sbjct: 223 MCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGL 259
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 30/165 (18%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKND--------GLKPDVYTYTAVM 58
D ++D + DNG + LE ++ + K D G++PDV TY ++
Sbjct: 458 DIVTCNTLLDGLCDNGKLKDA-----LEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILI 512
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHI 101
G G+ E EL E RG+ PN +T + N +
Sbjct: 513 SGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFS 572
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +TFN ++ C G++D L L M G + Y TLI
Sbjct: 573 PDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLI 617
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 39/190 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +N A + M G P+V T+ T+++ Y E+L + GL D
Sbjct: 364 FCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVAD 423
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY ++ GFC VG N ++L + I GV P++VT L + D G +
Sbjct: 424 TTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFK 483
Query: 102 -------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P T+N +I L GK +A L M G +P+ Y
Sbjct: 484 AMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITY 543
Query: 143 DTLIKKLDQQ 152
++I L +Q
Sbjct: 544 SSMINGLCKQ 553
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 41/186 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +++ M + G + TTY L A ++ + + G+ PD
Sbjct: 399 YCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 458
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER------------GVTPNVVTL-IHLHNVID 97
+ T ++DG C G+ + +E+ +A+++ GV P+V T I + +I+
Sbjct: 459 IVTCNTLLDGLCDNGKLKDALEMF-KAMQKSKMDLDASRPFNGVEPDVQTYNILISGLIN 517
Query: 98 IGH----------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
G +P TIT++++I LC ++D+A + M P
Sbjct: 518 EGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVT 577
Query: 142 YDTLIK 147
++TL+
Sbjct: 578 FNTLVS 583
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDIG 99
DVY++ ++ FC + + + + G P+VV TL+H + +D+
Sbjct: 111 DVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLF 170
Query: 100 HI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H P +TF ++ LC G++ +A+ LL M E G P++ Y T++
Sbjct: 171 HQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 220
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A ++++ M G P V TY + EAY + K++GL+ +
Sbjct: 627 FCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELN 686
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V Y++++DGF KVGR +E ++ E +++G+TPNV T L+
Sbjct: 687 VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQ 746
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N+ ++ P IT++ +I LC V K +KA + M + G P+ Y T+I L
Sbjct: 747 NMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGL 802
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+ R + + + G+ P+V +Y+IL E YE+ +K G D + Y +
Sbjct: 565 KGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFI 624
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR-------------- 103
DGFCK G+ N+ +LL E +G P VVT +VID + I R
Sbjct: 625 DGFCKSGKVNKAYQLLEEMKTKGRQPTVVT---YGSVIDGLAKIDRLDEAYMLFEEAKSN 681
Query: 104 -----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L++ + + G P+ ++ L+ L
Sbjct: 682 GLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 732
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ G P+V Y + EA +K D P+
Sbjct: 348 YGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-APN 406
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
+ TY ++D CK G ++ + E G+ PNV+T+ I + + +
Sbjct: 407 LSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFE 466
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF ++I L G++D A L M + KIP+ +Y +LIK
Sbjct: 467 GMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSF 522
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++D M N H ++ Y + A++ +K+ GL PD TYT+++
Sbjct: 252 ALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIG 311
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
CK R +E +E+ E +E+ ++P +N +I GK
Sbjct: 312 VLCKGNRLDEAVEIF-EQMEQN-----------------RNVPCAYAYNTMIMGYGSAGK 353
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+A LL G IPS Y+ ++ L ++
Sbjct: 354 FDEAYSLLERQKARGCIPSVIAYNCILTCLGKK 386
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 30/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EA ++ + M N P Y + EAY +L K G P V
Sbjct: 314 CKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSV 373
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++ K GR E + E +++ PN+ T +N +I
Sbjct: 374 IAYNCILTCLGKKGRLGEALRTFEE-MKKDAAPNLST------------------YNVLI 414
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G+++ A + M E G P+ + +I +L
Sbjct: 415 DMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRL 452
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---- 89
+AY + + + P+ YT+++ F K GR + ++ E I RG +P++ L
Sbjct: 495 DAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYM 554
Query: 90 -------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ G IP ++++ +I L G + L + M E G +
Sbjct: 555 DCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCV 614
Query: 137 PSRTLYDTLI 146
Y+T I
Sbjct: 615 LDTHAYNTFI 624
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+ + GY P V TY IL EA+E+ + GL+PD TYT +
Sbjct: 166 EALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 225
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
DG CK GR + + +L + E+G P+VV+ + L + G
Sbjct: 226 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCS 285
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P I+FN +I C GK KA+ M + G P+ Y+ L+ L
Sbjct: 286 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 333
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ M G PN ++ L +A + G+KP V
Sbjct: 264 CKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTV 323
Query: 52 YTYTAVMDGFCKV---GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI---------- 98
TY ++DG CK GR E + L + IE+G P+VVT L + +
Sbjct: 324 VTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRL 383
Query: 99 -------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G IP T+N++I LCG+ K+D+AL L M E G +P Y T+I
Sbjct: 384 LGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 32/173 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPD 50
C EAR +I D G+ PNV TY+ L EA ++ +V G +P+
Sbjct: 126 CKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPE 182
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V TY ++DG K R NE EL + ++ G+ P+ +T L+ L
Sbjct: 183 VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLK 242
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ + G +P ++ N VI LC ++D+A +LL M G P+ ++TLI
Sbjct: 243 DMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 295
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 31/163 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G+ PN TY L +A + + G PDV TY ++ GFCKVG
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNN 109
+E +++ + A++RG P+VVT LI+ L ++ +P +T+N+
Sbjct: 61 LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ LC G++D+A +L+ + G P+ Y TLI L ++
Sbjct: 121 LVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRE 160
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN +A+ + + M GY P+V TY L EA ++ G PDV
Sbjct: 21 CNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDV 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------VID 97
TY A+++GFCK + +E +L + + P+VVT L N ++D
Sbjct: 81 VTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVD 140
Query: 98 IGHIPRTITFNNVIQALCG-VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P IT++ +I LC + + +AL L + + G P Y+ LI L
Sbjct: 141 KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGL 193
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA K+ D G+ P+V TY L EA +L + ++ L PD
Sbjct: 55 FCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPD 114
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHL 92
V TY ++++G CK GR +E L+ +++G +PNV+T L
Sbjct: 115 VVTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLF 171
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+V+ G+ P T+N +I L ++++A L + +HG P Y I L
Sbjct: 172 GSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 228
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 31/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ M + G P+V ++ + EA +L ++ G P+
Sbjct: 229 CKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNA 288
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------------------LIH 91
++ ++ G C+ G+ + M E ++RGV P VVT +
Sbjct: 289 ISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITL 348
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G +P +T++ +I L GK+D A LL M G IP+ Y++LI L
Sbjct: 349 FDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGL 406
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 29/182 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A VI M G+ P+ +TY+ + +A+++ +K +G+ P
Sbjct: 196 CLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAP 255
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH------------- 93
DVY YT ++D FCK G + +E G PNVVT LIH +
Sbjct: 256 DVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVY 315
Query: 94 -NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKKLDQ 151
++ G P +T+ +I LC GKI+KA + +M E+ +IP ++ ++
Sbjct: 316 EMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASN 375
Query: 152 QP 153
+P
Sbjct: 376 EP 377
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA++V M + GY PNV TY+ L A ++L + + P+V
Sbjct: 425 CKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNV 484
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT ++DG CKVG+++E +L+ E+G PNVV T+ +I
Sbjct: 485 VIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVV------------------TYTAMI 526
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+++K L LL M G P+ Y LI
Sbjct: 527 DGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLI 561
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L EA ++L ++ +G +P+ Y A++DG CK G+ +E E+
Sbjct: 377 PNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEV 436
Query: 74 LNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
+E G PNV T L L +++ P + + +I LC
Sbjct: 437 FTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCK 496
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK D+A L+ +M E G P+ Y +I
Sbjct: 497 VGKTDEAYKLMVMMEEKGCNPNVVTYTAMI 526
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
+C +AR D M +G PNV TYT L E YEM+++ G
Sbjct: 267 FCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLS---KGC 323
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTIT 106
P++ TYTA++DG CK G+ + ++ + V P+V +H V + P T
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVD--MHFRVVDGASNEPNVFT 381
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ LC ++ +A LL M G P+ +YD LI
Sbjct: 382 YGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALI 421
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 46/176 (26%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK-- 48
Y +A +V + M G PN+ TYT L +A ++ +K + ++
Sbjct: 302 YLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIP 361
Query: 49 ---------------PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
P+V+TY A++DG CK + E +LL G PN
Sbjct: 362 DVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPN-------- 413
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++ +I C GK+D+A + M E G P+ Y +LI +L
Sbjct: 414 ----------HVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRL 459
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA + M + PNV TY IL +L + +G P
Sbjct: 53 CEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSP 112
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------HNVIDI-- 98
+ +++ +C+ G +LL + ++ G P V L +V+D+
Sbjct: 113 RIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAE 172
Query: 99 ---------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + + +N + LCG+GK +KA ++ M G IP + Y +I L
Sbjct: 173 KAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYL 232
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D EA K++ M + G +PNV TYT + + E+L + + G P
Sbjct: 495 CKVGKTD--EAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAP 552
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE 76
+ TY +++ C G +E +LL E
Sbjct: 553 NFVTYRVLINHCCSTGLLDEAHKLLEE 579
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL 92
E L ++ + PD YT ++ G C+ E M+ L PNV+T L
Sbjct: 28 EALSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGC 87
Query: 93 HNVIDIGHIPRTIT-------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
N +G R ++ FN+++ A C G A LL M + G P
Sbjct: 88 LNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGY 147
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 148 VVYNILI 154
>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ N A V+ + GY P+ T+T L EA ++ + +G +PD
Sbjct: 55 FCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPD 114
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGH--------- 100
V TY +++G CK + E + L ++ + +G++PN T L H + +GH
Sbjct: 115 VLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFY 174
Query: 101 -------IPRTITFNNVIQALCGVGKI---DKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P +TFN ++ ALC G I DKA+ L M + G IP Y+TLI L
Sbjct: 175 AMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGL 233
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 35/180 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ D M G+ P+V TY L EA + ++ G+ P+
Sbjct: 91 CVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNN 150
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI------- 98
+TY++++ G C +G E + L I R + P+ +T L +I I
Sbjct: 151 FTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGL 210
Query: 99 -------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTLIK 147
G IP T+T+N +I LC VG++ A+ L M +G+IP R L+D L K
Sbjct: 211 FEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCK 270
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 31/156 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G PN TY+ L EA + + + + PD
Sbjct: 126 CKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQ 185
Query: 52 YTYTAVMDGFCKVGR---SNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
T+ ++D CK G ++ M L E ++G+ P+ VT LIH
Sbjct: 186 LTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIAL 245
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
H ++ G IP +T+ + LC ++ +A++LL
Sbjct: 246 FHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLL 281
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M G P++ TY IL EA +L ++ L PD+
Sbjct: 234 CHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDI 293
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ Y+ VMDG C+ G +L ++ +G+ P+V T
Sbjct: 294 HIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRT 330
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 23/124 (18%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
T+L Y+ + + G+ + YT +++ FC + R +L +
Sbjct: 28 TVLSLYK---QMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGD-------------- 70
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL- 149
++ +G+ P T TF +I+ LC GKI +AL L M G P Y TLI L
Sbjct: 71 ----ILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLC 126
Query: 150 -DQQ 152
D+Q
Sbjct: 127 KDRQ 130
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ + P++ Y+I+ A ++ + + GL PDV
Sbjct: 269 CKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDV 328
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TYT +++G C+ G E +L E E +
Sbjct: 329 RTYTIMINGLCQQGLLAEASKLFGEMDENDI 359
>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +F EA+K+ M G PN TY +L EAYE+ ++ G+ PD
Sbjct: 186 YCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPD 245
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTYT+++ G C G+ ++ +EL NE ++G+ NVV T+ +
Sbjct: 246 IYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVV------------------TYTAI 287
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ ++A L M E G P +Y +L+ L
Sbjct: 288 ISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSL 326
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 29/131 (22%)
Query: 27 VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
V TYT+L E M + G+K D++ YT V++ CK+G + L +
Sbjct: 1 VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60
Query: 76 EAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
E E+G+ NV H T+ +I +C G+++ A +L+ M G
Sbjct: 61 ELTEKGLVANV----H--------------TYGALIDGVCKAGEMEAAEILVNEMQTRGL 102
Query: 136 IPSRTLYDTLI 146
++ +Y+TLI
Sbjct: 103 DVNQLIYNTLI 113
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +++ M G N Y L EA+++ + ++ G + D+
Sbjct: 82 CKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDI 141
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH----NVID------- 97
YT + DG K+ + E L IE+GV PNVV TLI ++ N ++
Sbjct: 142 YTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQE 201
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N +I G++ +A L M G P Y +L+
Sbjct: 202 MKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLL 253
>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 678
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C A + M G PN+ T+ L +A ++L ++ +GLKP
Sbjct: 438 CFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKP 497
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------- 101
D++T+++++DG C++ R+ E +E E IE G+ PN V I + ++ IG +
Sbjct: 498 DIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLL 557
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P T ++N +IQ C + K++KA L M G P Y I+ L +
Sbjct: 558 RRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSE 616
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH------- 93
+DGL +V++Y +++ FC+ + E + RGV PN+V TLI+ H
Sbjct: 422 SDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAID 481
Query: 94 -------NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++++ G P TF++++ LC + + ++AL M E G P+ +Y+ LI
Sbjct: 482 KARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILI 541
Query: 147 KKL 149
+ L
Sbjct: 542 RSL 544
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 18/120 (15%)
Query: 27 VTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
V + +I AY + D D +TY ++ G CKVG +E + L+ +
Sbjct: 190 VKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQ---------- 239
Query: 87 VTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D GH P T+ +I+ C ++D+A + M + G P+ L+
Sbjct: 240 --------MKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALV 291
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M D G+ PNV TYT+L EA+ + +K+ G+ P+ T A++
Sbjct: 232 EALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALV 291
Query: 59 DGFCKVGRSNEVMELLNEAIER 80
G + ++ +ELL+E ++R
Sbjct: 292 HGVFRCVDPSKALELLSEFLDR 313
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D + K++ M G P+ +Y L +A ++ ++ GL PD
Sbjct: 545 CTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDN 604
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
YTY+A ++ + GR E ++ G +P+
Sbjct: 605 YTYSAFIEALSESGRLEEAKKMFYSMEANGCSPD 638
Score = 35.4 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL P Y A++D K SN + +L ++ N V
Sbjct: 174 GLSPTTRLYNALIDALVK---SNSI-DLAYLKFQQMAADNCVA--------------DRF 215
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
T+N +I +C VG +D+AL L+ M + G P+ Y LI+
Sbjct: 216 TYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIE 257
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M G PN T+ L +A E+L + +G PD+
Sbjct: 438 CSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 497
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G ++E +ELLN +++G++PN + + N
Sbjct: 498 ISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFEN 557
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC G+ D+A+ L M G +P+ + Y LI+ L
Sbjct: 558 IQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGL 612
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C+ + + EA ++ MFD + T+ IL + E+L + G PDV
Sbjct: 333 CSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDV 392
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
TYT V++GFCK G +E + LL G PN V+ +
Sbjct: 393 ITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQ 452
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +TFN +I LC G +++A+ LL M +G P Y T+I L
Sbjct: 453 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 507
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + +++ M G PN+ T++ L +E+ + G PDV
Sbjct: 228 CMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDV 287
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
Y ++DG CK R +LN G++PNVV TL+ L
Sbjct: 288 RMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAE 347
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D +TFN ++ LC G +D+ + +L M EHG +P Y T+I
Sbjct: 348 MFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVI 399
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 27/126 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +PDV +Y AV+ G C R V +L+ E + G PN+VT L IGH+ R
Sbjct: 212 GCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTL-----IGHLCRNG 266
Query: 106 TFNNV----------------------IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
F V I +C +++ A +L M +G P+ Y+
Sbjct: 267 LFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYN 326
Query: 144 TLIKKL 149
TL+K L
Sbjct: 327 TLLKGL 332
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN--------------------V 86
+ P+ YTY ++ C GR + + +L++ RG P V
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAV 166
Query: 87 VTLIHLHN---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF-LMYEHGKIPSRTLY 142
L LH +D+G+ N V+QA+C G +D+A+ LL L+ G P Y
Sbjct: 167 GVLRDLHGRGCALDVGNC------NLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSY 220
Query: 143 DTLIKKL 149
+ +++ L
Sbjct: 221 NAVLRGL 227
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 36/181 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D EA +++ M D+ P+V TYT L +AYE+ + + L PD
Sbjct: 297 YCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD 356
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID------------- 97
V T+T+++DG C GR + +ELL E RG P + T + V+D
Sbjct: 357 VVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYT---YNCVVDGYCKSNQVRKAEE 413
Query: 98 -------IGHIPRTITFNNVIQALCGVGKIDKALLLL-FLMYEHGKIP-SRTLYDTLIKK 148
G +P T+T+N ++ C G+ D+AL L L E G P S +Y ++
Sbjct: 414 LVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDA 473
Query: 149 L 149
L
Sbjct: 474 L 474
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
R +D + P TY L EA +L + +D PDV TYT +M
Sbjct: 272 RDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSA 331
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
FCK+GR ++ EL + + ++P+VVT F +++ LCG G++
Sbjct: 332 FCKMGRLDDAYELFQQMVANKLSPDVVT------------------FTSLVDGLCGEGRM 373
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
+ AL LL + G P+ Y+ ++
Sbjct: 374 EDALELLEEITRRGCPPTIYTYNCVV 399
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLM-NVKNDGLKPDVYTYTAV 57
+AR++++ M G N TY+ L EA +L+ V G PD+ TY+ V
Sbjct: 202 DARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTV 261
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+DG CK GR + +++ E + P IT+N++I C
Sbjct: 262 IDGLCKAGRLRDAVDIFEE---------------------MSCAPTAITYNSLIGGYCRA 300
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +D+A+ LL M + P Y TL+
Sbjct: 301 GDMDEAIRLLGKMVDDNCAPDVITYTTLM 329
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LK 48
YC N +A +++ G+ PN TY IL +A + L + ++G
Sbjct: 402 YCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP 461
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH----------------- 91
V Y ++D C+ GR+++ ++ E I+RG P T
Sbjct: 462 TSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHEL 521
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
L +I GH P T + V+ A C G I KA
Sbjct: 522 LEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKA 553
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVY 52
C+ D A + D M + G + T Y ++ EA +L+++K+ G+ P
Sbjct: 57 CDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTL 116
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNV 95
+ V+ G C+ GR + + + + P+ +T L+H L +
Sbjct: 117 LHNVVIGGLCRAGRLRHALGVYRQ-MNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEM 175
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ H+P T V+Q+LC ++D A L+ M G + Y L+ L
Sbjct: 176 VSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 229
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 32/156 (20%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
++ + P+ TYT L +A ++L + + PD T T V+ C R +
Sbjct: 142 NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVD 201
Query: 69 EVMELLNEAIERGVTPNVVTL------------------IHLHNVIDIGHIPRTITFNNV 110
+ EL+ E + RG+ N +T + L V G P +T++ V
Sbjct: 202 DARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTV 261
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G++ A+ + E P+ Y++LI
Sbjct: 262 IDGLCKAGRLRDAVDIF---EEMSCAPTAITYNSLI 294
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M NG PN TY + EA L + +DG++PDV
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P Y T+I
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL +A + ++ GL PD
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY V+ CK GR + M + I+ ++P N+V +LIH +
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P Y TLI
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 31/146 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDG 60
V+ M G PNV +Y IL EA E+L + +DG PDV +YT V++G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
F K G ++ +E ++RG+ PNVVT ++++I ALC +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVT------------------YSSIIAALCKAQAM 250
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
DKA+ +L M ++G +P+ Y++++
Sbjct: 251 DKAMEVLTSMVKNGVMPNCRTYNSIV 276
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G P++ TY+ L EA ++L ++ + G+KPD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
TY +++G+CK+ R + + L E GV+P+++T +N+I
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT----YNII 590
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M D P Y L +A E+++ + + G+ D
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+ +++D CK GR E +L + + GV P+++ TLI L +
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +G P +T+N +I C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY IL + L NV G + D +T ++ G C R+++ M++
Sbjct: 89 PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + +G IP ++N +++ LC + +AL LL +M +
Sbjct: 149 V-----------------LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 134 GK--IPSRTLYDTLI 146
G P Y T+I
Sbjct: 192 GGDCPPDVVSYTTVI 206
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 28/166 (16%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
++A ++ M +N PN T+ +L A ++ +++ GLKP V TY ++
Sbjct: 285 YKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGH 100
++G C G+ NE LL+E + + PNV+T LI+ N+ G
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL 404
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P ITFN ++ C GK+++A LL +M E G +P+ + Y+ LI
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLI 450
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ EA+ ++D M + PNV TY L EA E+ N+ GL P+V
Sbjct: 349 CNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNV 408
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID- 97
T+ ++ G+CK G+ E L +E+G PN T + + N+++
Sbjct: 409 ITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNE 468
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G T+T+N +I A C + KA L+ M + G PS Y+ L+
Sbjct: 469 MQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILL 520
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K EAR++ D + G PNV T+ L EA+ + + G P+
Sbjct: 383 YCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPN 442
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY ++ GFC+ G+ EV LLNE RGV + VT LI +
Sbjct: 443 ASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLID 502
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D G P +T+N ++ C G + AL L M + G+ + Y+ LI+
Sbjct: 503 EMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQ 556
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA + M + G+ PN +TY L E +L ++ G+K D
Sbjct: 418 YCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKAD 477
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP----------------NVVTLIHLHN 94
TY ++ +C+ + L++E +++G+ P N+ ++L
Sbjct: 478 TVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRK 537
Query: 95 VIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G +T+N +IQ C GK++ A LL M E G IP+RT Y+ + +++ ++
Sbjct: 538 QMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEK 596
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 31/173 (17%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+N+F V M PN+ T+ + +A +++ ++K G P+V T
Sbjct: 208 ENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVT 267
Query: 54 YTAVMDGFCKVGRSNEVME---LLNEAIERGVTPNVVT-----------------LIHLH 93
Y ++DG+CK+GR ++ + +L E +E V+PN VT L
Sbjct: 268 YNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFE 327
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+N+++ LC GK+++A +LL M P+ Y+ LI
Sbjct: 328 EMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALI 380
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K + +A ++ID M D G P+ TY IL A + ++ +G +
Sbjct: 488 WCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWAN 547
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIP 102
V TY ++ G+C+ G+ + LLNE +E+G+ PN T I +++ G +P
Sbjct: 548 VVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLP 600
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH------------ 91
+ P++ T+ V++G CKVG+ N+ +++++ G PNVV TLI
Sbjct: 226 ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMY 285
Query: 92 -----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L +++ P ++TFN +I C + AL + M G P+ Y++L+
Sbjct: 286 KADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLV 345
Query: 147 KKL 149
L
Sbjct: 346 NGL 348
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V D M NG PN TYT L EA + L + ++G++P+V
Sbjct: 244 CKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNV 303
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY++ MD CK GR E ++ + ++RG+ P++ T L+ +H + D+
Sbjct: 304 VTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDL 363
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P FN +I A GK+D+A+L+ M + G P+ Y TLI
Sbjct: 364 MVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLI 415
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 50/166 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C EARK+ D M G P++TTY+ L
Sbjct: 314 CKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDH 373
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
EA + ++ GLKP+ TY+ +++G+CK+ R + L E
Sbjct: 374 YVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQE 433
Query: 77 AIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
+ GV+PN +T I L + G RT T + GK D
Sbjct: 434 MVSNGVSPNFITYNIMLQGLFRTG---RTATAKEFYVQIIKSGKKD 476
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C++N EA +++ M D+G PNV +Y+ + +AY + + + P
Sbjct: 172 CHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILP 231
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI------- 101
+V Y++++ CK ++ ME+ + ++ GVTPN T L H G +
Sbjct: 232 NVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFL 291
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+++ + LC G+ +A + M + G P T Y +L+
Sbjct: 292 EKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLL 345
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 19/117 (16%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE--RGVTPNVVTLIHL-------------- 92
P+V+++T ++ G C RS E +ELL+ + G PNVV+ +
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY 218
Query: 93 ---HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D +P + ++++I ALC +DKA+ + M ++G P+ Y +L+
Sbjct: 219 ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLV 275
>gi|195650415|gb|ACG44675.1| hypothetical protein [Zea mays]
Length = 558
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 32/163 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + +A +V+D M G P + TY L EA E+L +K+ L P
Sbjct: 221 CLCKRGRVTKAMEVLDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTP 280
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+YT+T V+DGFCKVGR+ E + ++AI G++P T T+N
Sbjct: 281 DIYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPT------------------TFTYNA 322
Query: 110 VIQALCGVGKIDKALLLLFLM---YEHGKIPSRTLYDTLIKKL 149
++ C G KA LL M + +P +T + ++ L
Sbjct: 323 LLNGXCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTAL 365
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +P V T++AV+ CK GR + ME+L+ + G P +
Sbjct: 207 GFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLGCEPTIR------------------ 248
Query: 106 TFNNVIQALCGVGKIDKALLLL 127
T+N+++ LC VG++++AL LL
Sbjct: 249 TYNSLVGGLCYVGRLEEALELL 270
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
+ PD +++ + C+ G +E L+E + RG P+V T
Sbjct: 173 VAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVAT------------------ 214
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
F+ V+ LC G++ KA+ +L M G P+ Y++L+ L
Sbjct: 215 FSAVVGCLCKRGRVTKAMEVLDAMLGLGCEPTIRTYNSLVGGL 257
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +++ M +PNV TYTIL EA +L + +G+KP+
Sbjct: 195 FCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPN 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V +Y +MDG+C +G ++ + +++GV PNV + + L
Sbjct: 255 VVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLR 314
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+ +P T+T++++I C +G+I AL LL MY G+ Y +L+ L
Sbjct: 315 EVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDAL 370
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A+++ M G +PNV +Y I+ EA +L V + + P+
Sbjct: 265 YCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPN 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY++++DGFCK+GR ++LL E RG +VV T+ ++
Sbjct: 325 TVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVV------------------TYTSL 366
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ALC +DKA L M E G P++ Y LI L
Sbjct: 367 LDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGL 405
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M+ G +V TYT L +A + M +K G++P+
Sbjct: 335 FCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPN 394
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTYTA++DG CK GR +L + +G NV T+N +
Sbjct: 395 KYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINV------------------WTYNVM 436
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G +D+AL + M E+G IP ++ +I+ L
Sbjct: 437 ISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSL 475
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M G PNV TY+ ++EA+ +L + + P+VYTYT +M
Sbjct: 168 EAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILM 227
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
D CK G+ E LL + GV PNVV+ L H ++ G
Sbjct: 228 DALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVN 287
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P ++N +I LC ++D+A+ LL + +P+ Y +LI
Sbjct: 288 PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLI 332
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + ++ D + G+ + +Y L A ++L +++ +P+V
Sbjct: 91 CLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNV 150
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------LHNV 95
Y ++DG CK NE +L +E RG+ PNV+ TLI+ L N
Sbjct: 151 VMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNE 210
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +I P T+ ++ ALC GK+ +A LL +M + G P+ Y+TL+
Sbjct: 211 MILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLM 262
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----- 89
A + ++ G++PD++T +++ FC +G+ +L + ++ G PN +TL
Sbjct: 29 AISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMK 88
Query: 90 -----------IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+H H+ V+ G +++ ++ LC +G+ AL LL ++ + P
Sbjct: 89 GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRP 148
Query: 138 SRTLYDTLIKKL 149
+ +Y+T+I L
Sbjct: 149 NVVMYNTIIDGL 160
>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 624
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M G PN T+ + +A E+L + +G PD+
Sbjct: 417 CSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDL 476
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+Y+ V+DG K G++ E +ELLN I +G+TPNV+T + N
Sbjct: 477 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDN 536
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC + D A+ L M +G +P+ + Y LIK L
Sbjct: 537 IQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGL 591
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M ++G P+V TYT I EA +L N+ + G KP+ +YT V+ G
Sbjct: 357 ELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGL 416
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
C R + EL++ I++G PN +TFN +I LC G ++
Sbjct: 417 CSTERWVDAEELMSRMIQQGCLPN------------------PVTFNTIINFLCKKGLVE 458
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A+ LL M +G P Y T+I L
Sbjct: 459 QAIELLKQMLVNGCNPDLISYSTVIDGL 486
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C + A +++ M G PNV Y T+L+ A E+L + D
Sbjct: 277 CKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDD 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
T+ ++D FC+ G + V+ELL + +E G P+V+T ++ L N
Sbjct: 337 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKN 396
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P TI++ V++ LC + A L+ M + G +P+ ++T+I L
Sbjct: 397 MPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFL 451
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+++ +E L + G PD+ Y ++DG CK G E+L+ G+ PNVV
Sbjct: 247 MVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVC--- 303
Query: 92 LHNVIDIG--------------------HIP-RTITFNNVIQALCGVGKIDKALLLLFLM 130
+N + G + P +TFN ++ C G +D+ + LL M
Sbjct: 304 -YNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 362
Query: 131 YEHGKIPSRTLYDTLI 146
EHG +P Y T+I
Sbjct: 363 LEHGCMPDVITYTTVI 378
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A ++ M G +P++ +Y L A E+L +K+ G P
Sbjct: 341 FCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPV 400
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+ +Y V+DG K G++ E +ELLNE + +G+ P+++T + +
Sbjct: 401 LISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFC 460
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D+G P T+ +N ++ LC + A+ L M +G +P+ + Y LI+ L
Sbjct: 461 KVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGL 516
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ + +A K++D M G P++ TY ++ +A E L ++ + G +P+
Sbjct: 202 CKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNT 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+Y V+ G C R + +L+ E ++G PNVVT LI L
Sbjct: 262 VSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQ 321
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P ++++N ++ A C K+D+A+ + LM G P Y+TL+ L
Sbjct: 322 IPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTAL 376
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 42/187 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A V+D M G P+V TYTIL +A ++L ++ G PD+
Sbjct: 167 CGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDI 226
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY V++G C+ GR ++ +E L G PN V+ +N++
Sbjct: 227 ITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVS----YNIVLKGLCTAERWEDAEK 282
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---- 146
G+ P +TFN +I LC G ++ A+ +L + ++G P+ Y+ ++
Sbjct: 283 LMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFC 342
Query: 147 --KKLDQ 151
KK+D+
Sbjct: 343 KQKKMDR 349
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 30/172 (17%)
Query: 3 CNKNDFFEARKVI-----DYMFDNGYHPNVTTYTI---LEAYEMLMNVKNDGLKPDVYTY 54
C EAR+V+ D M Y+ V Y + L+A L V + ++PD YTY
Sbjct: 105 CASGRTAEARRVLAACEPDVM---AYNAMVAGYCVTGQLDAARRL--VADMPMEPDSYTY 159
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVID---- 97
++ G C GR+ + +L++ + RG P+VVT L ++D
Sbjct: 160 NTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRA 219
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P IT+N V+ +C G++D A+ L + HG P+ Y+ ++K L
Sbjct: 220 KGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGL 271
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA + + D G PN Y + A ++ + + ++G P+
Sbjct: 447 CREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNE 506
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TYT +++G G E ELL E RGV
Sbjct: 507 STYTILIEGLTYEGLVKEARELLGELCSRGV 537
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCNK D +A D M P V+TY +L EA M+ ++ + G+ PD
Sbjct: 351 YCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPD 410
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
TY +++G+C+ G + + L +E I +G+ P +VT L
Sbjct: 411 SITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFE 470
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I G P I FN +I C G +D+A LL M + +P Y+TL++
Sbjct: 471 KIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQ 524
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY---------EMLMNV-KNDGLKPDV 51
C + +A+ I M + G PNV TY T++ Y M++++ KN G++PD
Sbjct: 247 CKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDS 306
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY +++ G CK G+ E +L + E G+ P VT L
Sbjct: 307 YTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDE 366
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P T+N +I AL GK+D+A ++ M + G +P Y+ LI
Sbjct: 367 MVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILI 418
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+N A + + + G P++ + L A+ +L + + PD T
Sbjct: 459 RNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVT 518
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN--------------VI 96
Y +M G C+ G+ E ELL E RG+ P+ + TLI ++ ++
Sbjct: 519 YNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEML 578
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
IG P +T+N +IQ LC + D A LL M G P + Y +LI+ + +
Sbjct: 579 SIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGK 633
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY--------------TILEAYEMLMNVKNDG 46
C + D +A + D M + G P + T+ T+ Y + +K
Sbjct: 177 CELKRGD--DAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLK--- 231
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------LH 93
+K VYT+ +++ CK G+ + + + GV PNVV T+IH
Sbjct: 232 IKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGAR 291
Query: 94 NVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+DI G P + T+ ++I +C GK+++A +L M E G +P+ Y+TLI
Sbjct: 292 MVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D +A + D M G++P + TY L A E+L + + G+ PD
Sbjct: 561 YSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPD 620
Query: 51 VYTYTAVMDGFCKVGRSNEVME 72
TY ++++G KV S+E +
Sbjct: 621 DSTYFSLIEGIGKVDDSSEASD 642
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + K+ + M DNG P+ Y IL EA + + + GL+P
Sbjct: 18 FCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPS 77
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------------IHL 92
+YTY ++++ FCK + E MEL E+G P+VVT +
Sbjct: 78 IYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLF 137
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
H +I+ G T+ +N +I LC I++A LL M G +P Y+T++ L
Sbjct: 138 HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGL 194
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA ++ + M G P++ TY L EA E+ + G +PD
Sbjct: 53 YAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPD 112
Query: 51 VYTYTAVMDGFCKVGRSNEVMELL-NEAIERGVTPNVVT---LIH--------------L 92
V TY+ ++ G CK G+ E +E+L ++ IERG + N V LI+ L
Sbjct: 113 VVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLL 172
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G++P IT+N ++ LC +GK+ +A M G P Y+ L+ L
Sbjct: 173 EEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL 229
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A KV++ M G P+V TY IL +A+E+ + ++G PD
Sbjct: 299 HCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ +Y+ V++G CK + ++ L + IER + P+VV TFN +
Sbjct: 359 IVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV------------------TFNIL 400
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ LC GK+D+A LL M G P Y+TL+ L +Q
Sbjct: 401 MDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQ 442
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G N Y L AY++L + + G PD TY ++ G C++G+
Sbjct: 140 MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGK 199
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNN 109
+E + + RG +P+VV L +VI G++P T+T+N+
Sbjct: 200 VSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNS 259
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ L +D+A + M G P+ Y ++
Sbjct: 260 ILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVL 296
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------------- 92
P+ YT+ V+ FCK G+ + +L + ++ G++P+ + L
Sbjct: 6 PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P T+N+++ A C K+ +A+ L M E G P Y T+I L
Sbjct: 66 YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +AR + D M + P+V T+ IL EA ++L + G PD
Sbjct: 370 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDY 429
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
Y +M+G K GR + L E+G
Sbjct: 430 VAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M NG PN TY + EA L + +DG++PDV
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P Y T+I
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL +A + ++ GL PD
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY V+ CK GR + M + I+ ++P N+V +LIH +
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P Y TLI
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 31/146 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDG 60
V+ M G PNV +Y IL EA E+L + +DG PDV +YT V++G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
F K G ++ +E ++RG+ PNVVT ++++I ALC +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVT------------------YSSIIAALCKAQAM 250
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
DKA+ +L M ++G +P+ Y++++
Sbjct: 251 DKAMEVLTSMVKNGVMPNCRTYNSIV 276
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G P++ TY+ L EA ++L ++ + G+KPD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
TY +++G+CK+ R + + L E GV+P+++T +N+I
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT----YNII 590
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M D P Y L +A E+++ + + G+ D
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+ +++D CK GR E +L + + GV P+++ TLI L +
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +G P +T+N +I C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY IL + L NV G + D +T ++ G C R+++ M++
Sbjct: 89 PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + +G IP ++N +++ LC + +AL LL +M +
Sbjct: 149 V-----------------LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 134 GK--IPSRTLYDTLI 146
G P Y T+I
Sbjct: 192 GGDCPPDVVSYTTVI 206
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ A KV+D + + P V TYTIL EA ++L + GL PD+
Sbjct: 183 CNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDM 242
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YTY A++ G CK G EL+ +G P+V++ I L ++ G
Sbjct: 243 YTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAE 302
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T++ +I +LC G+ID+A+ +L +M E P YD LI L ++
Sbjct: 303 MFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKE 360
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVY 52
C F E+ ++ + + GY P+V T L E +M + +PDV+
Sbjct: 79 CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVF 138
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNVIDIG--------- 99
Y AV+ GFCKV R ++LN RG P++VT + L N +G
Sbjct: 139 AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQL 198
Query: 100 ----HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+P IT+ +I+A G I++A+ LL M G +P Y+ +I+ + ++
Sbjct: 199 LLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKE 255
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N+ + E K++ MF G PN TY+IL EA +L + L PD
Sbjct: 287 FLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPD 346
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
Y+Y ++ CK GR + + +++ I G P++V L +
Sbjct: 347 TYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFN 406
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +G P ++N +I AL G +AL ++ M G P Y++LI L
Sbjct: 407 KLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCL 462
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C + A ++DYM NG P++ Y TIL +A E+ ++ G P+V
Sbjct: 358 CKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNV 417
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+Y ++ G + + ++ I +GV P+ +T LI L +
Sbjct: 418 SSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDD 477
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P I++N V+ LC V +ID A+ + M E G P+ T Y LI+ +
Sbjct: 478 MEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 532
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA ++D M +G+ P V +Y I+ +A M + G +P
Sbjct: 461 CLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRP 520
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+ TY +++G G E MEL N R V
Sbjct: 521 NETTYILLIEGIGFAGWRTEAMELANSLFSRDV 553
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 29/143 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G+ + Y IL EAYE+L +K GL+PDVYTY ++ G CK G
Sbjct: 379 MKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGD 438
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
V ELL + I+ G P+VV TF +I C VG+ID+AL +
Sbjct: 439 FLAVDELLGKMIDGGCRPSVV------------------TFGTLIHGYCKVGQIDEALRI 480
Query: 127 LFLMYEHGKIPSRTLYDTLIKKL 149
M E G P+ +Y+TLI L
Sbjct: 481 FRSMDESGIQPNTVIYNTLIDFL 503
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + EA +++ M + G P+V TY L E+L + + G +P
Sbjct: 398 FCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPS 457
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------------HLHN 94
V T+ ++ G+CKVG+ +E + + E G+ PN V TLI L +
Sbjct: 458 VVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFD 517
Query: 95 VIDIGHIPRTIT-FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ H+P +T FN +++ L +KA L+ LM E P D L++ L
Sbjct: 518 EMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILMEWL 573
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 27/137 (19%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN--EAIERGVTPNVVTLIHLHN 94
++ ++++ ++P+V TY ++ G CK GR + + +L+ E V P+VV L+N
Sbjct: 158 QLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVM---LNN 214
Query: 95 VID----------------------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
++D G P T+T+N + A C G + A L+ M +
Sbjct: 215 IVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEK 274
Query: 133 HGKIPSRTLYDTLIKKL 149
P+ +T++ L
Sbjct: 275 ERVTPNAVTLNTIVGGL 291
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 34/158 (21%)
Query: 21 NGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G PN TY L A E++ ++ + + P+ T ++ G C VGR
Sbjct: 240 HGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGA 299
Query: 70 VMELLNEAIERGVTP----NVVT-------LIHLHNV----------IDIGHIPRTITFN 108
+E E +R V P N VT +H +NV +D G+ P I +
Sbjct: 300 ALEFFRE--KRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYF 357
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I L G++D A + M + G Y+ LI
Sbjct: 358 TMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILI 395
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 36/182 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA +V+D +P+V TYTIL +A ++L ++ G KPDV
Sbjct: 219 CDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDV 278
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G CK GR +E ++ LN G PNV+T HN+I
Sbjct: 279 VTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVIT----HNIILRSMCSTGRWMDAER 334
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
G P +TFN +I LC + +A+ +L M +HG +P+ Y+ L+
Sbjct: 335 LLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFC 394
Query: 151 QQ 152
Q+
Sbjct: 395 QE 396
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + ++ M G +P++ TY L A E+L + + G P
Sbjct: 393 FCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPV 452
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG KVG++ +ELL E +G+ P+++T L H
Sbjct: 453 LITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFH 512
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ + P +T+N ++ LC + +A+ L M E G P+ Y LI+
Sbjct: 513 DMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIE 566
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 63/212 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + +A K++D M G P+V TY +L EA + L N+ + G KP+V
Sbjct: 254 CNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNV 313
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------------- 88
T+ ++ C GR + LL++ + +G +P+VVT
Sbjct: 314 ITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEK 373
Query: 89 ---------------LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
L+H L ++ G P +T+N ++ ALC GK
Sbjct: 374 MPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK 433
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+D A+ +L + G P Y+T+I L +
Sbjct: 434 VDAAVEILNQLSSKGCSPVLITYNTVIDGLTK 465
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M G P+V T+ IL A ++L + G P+
Sbjct: 324 CSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNS 383
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y ++ GFC+ + + +E L + RG P++VT + L+
Sbjct: 384 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQ 443
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P IT+N VI L VGK + A+ LL M G P Y TL++ L ++
Sbjct: 444 LSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGRE 501
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C +A ++++ + ++G P+V TY +L E + L ++ + PDV T
Sbjct: 151 FCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVT 210
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
Y ++ C G+ E ME+L+ ++R P+V+T LI L +
Sbjct: 211 YNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMR 270
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+N +I +C G++D+A+ L M +G P+ ++ +++ +
Sbjct: 271 KKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSM 323
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E + L + G PDV T+++ GFC+ G++ + ++ G P+V+T +
Sbjct: 124 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVIT----Y 179
Query: 94 NVIDIGH------------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
NV+ G+ P +T+N ++++LC GK+ +A+ +L +
Sbjct: 180 NVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQREC 239
Query: 136 IPSRTLYDTLIK 147
P Y LI+
Sbjct: 240 YPDVITYTILIE 251
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCNK D A D M G P+V+TY +L EA +M+ ++ G+ PD
Sbjct: 288 YCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPD 347
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
TY +++G+ + G + +L NE + +G+ P VT L
Sbjct: 348 AITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFE 407
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D G P I FN +I C G +++A +LL M P ++TL++
Sbjct: 408 KILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 461
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPDVYTYTAVM 58
+AR+ I +M G+ PNV +Y TI+ Y N++ G++PD YTY +++
Sbjct: 191 KAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLI 250
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G CK GR E L ++ +E G+ PN V T+N +I C G
Sbjct: 251 SGMCKEGRLEEASGLFDKMVEIGLVPNAV------------------TYNTLIDGYCNKG 292
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++A M + G +PS + Y+ L+ L
Sbjct: 293 DLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 323
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+N EA + + + D G P+V + + A+ +L + + PD T
Sbjct: 396 RNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVT 455
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------NVI 96
+ +M G C+ G+ E LL+E RG+ P+ + TLI + ++
Sbjct: 456 FNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEML 515
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IG P +T+N +I+ LC + D A LL M G P + Y +LI+ +
Sbjct: 516 SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 568
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ + AR+++D M G P+ TY L EA + + GL P+
Sbjct: 218 YSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPN 277
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY ++DG+C G +E +++G+ P+V T L+H +
Sbjct: 278 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 337
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G IP IT+N +I G +A L M G P+ Y +LI L ++
Sbjct: 338 EMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 396
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D D M GY PNV TY L A+ M+ ++ + G+ P
Sbjct: 236 CKCGQTD----EACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTP 291
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV TY+ ++D FCK R +E +ELL+ RG TPNVV TFN+
Sbjct: 292 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV------------------TFNS 333
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC + +A + +Y +P + ++ LI
Sbjct: 334 IIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILI 370
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 32/175 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML--MNVKNDGLKP 49
C D EAR++ M G PNV TY++L EA E++ M K+ + P
Sbjct: 127 CKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLP 186
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERG---VTPNVVTLIHL-------------- 92
++ TY + +DG CK + E EL+ ++ G V+P+ VT L
Sbjct: 187 NIITYNSFLDGLCKQSMTAEACELM-RSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 245
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++I G++P +T+N ++ LC K+++A ++ M + G P Y L+
Sbjct: 246 NDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLV 300
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 34/179 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N+ ++ + + G+HP+V TY L EA + + + G P+V
Sbjct: 92 CKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNV 151
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTL----------------IHLH 93
TY+ +++G CKVGR +E EL+ E + V PN++T L
Sbjct: 152 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 211
Query: 94 NVIDIGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + P T+TF+ +I LC G+ D+A M G +P+ Y+ L+ L
Sbjct: 212 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGL 268
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 34/179 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLK- 48
C EAR++I M PN+ TY EA E++ ++++ L+
Sbjct: 162 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 221
Query: 49 -PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------------- 94
PD T++ ++DG CK G+++E ++ I G PNVVT L N
Sbjct: 222 SPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHA 279
Query: 95 ----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P IT++ ++ A C ++D+AL LL M G P+ ++++I L
Sbjct: 280 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 338
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ +++ P+ T+ IL +A + + ++PDV
Sbjct: 339 CKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDV 398
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
T+ A++DG CK G+ ++L+ GV PNVVT L+H L
Sbjct: 399 MTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEE 458
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P ++T+ +++ ALC + D AL L+ + G P Y+ L+ L
Sbjct: 459 MVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGL 513
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI----------- 90
DG+ P + TY +++G CK MEL E ++RG P+VV TLI
Sbjct: 75 DGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEE 134
Query: 91 --HLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG--KIPSRTLYDTL 145
LH + G +P +T++ +I LC VG+ID+A L+ M +P+ Y++
Sbjct: 135 ARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSF 194
Query: 146 IKKLDQQ 152
+ L +Q
Sbjct: 195 LDGLCKQ 201
Score = 42.4 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E + ++ M +G P TY L +A +++ +K+ G PD
Sbjct: 444 CKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDT 503
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++DG K G++ + + +L E + + GH P + TF
Sbjct: 504 VTYNILVDGLWKSGKTEQAITVLEEMVGK------------------GHQPDSFTFAACF 545
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L G + + LL ++ G +P T +++
Sbjct: 546 GGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C E + V D M G PN TY L +A + + G+ PD
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPD 364
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+ +Y+ +++GFCK+ + +E M L E + + P+VVT L + +
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D G P T+N+++ ALC ++DKA+ LL + G P + Y LIK L Q
Sbjct: 425 QMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQS 483
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 37/179 (20%)
Query: 10 EARKVIDYMF---DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
E R +D + N PNV Y + EA+++ + + G+ PDV TY+
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYS 264
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VIDI---- 98
A++ GFC +G+ + ++L N+ I + P+V T L N V D+
Sbjct: 265 ALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL------IKKLDQ 151
G P +T+N+++ C V +++KA + M + G P Y + IKK D+
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDE 383
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D G+ P+++TY+IL +A ++ ++ G DVY YT ++ GFC G N
Sbjct: 463 DKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFN 522
Query: 69 EVMELLNEAIERGVTPNVVT 88
E + LL++ + G P+ T
Sbjct: 523 EALALLSKMEDNGCIPDAKT 542
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C A V + GY P+ T+T L +A+ V G
Sbjct: 129 CFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHF 188
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D +Y ++ G CKVG + ++LL V PNVV +N
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVV------------------MYNT 230
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I ++C V +++A L M G P Y LI
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALI 267
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +ARKV + + GY+ +V YTI+ EA +L ++++G PD
Sbjct: 481 CQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDA 540
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ K ++ +LL E I RG+ N L
Sbjct: 541 KTYEIIILSLFKKDENDMAEKLLREMIARGLPLNFYDL 578
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P + + ++ K + V+ L + RG+ PN+V L N
Sbjct: 83 PPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSV 142
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
++ +G++P TITF + + LC G+I +A L
Sbjct: 143 FAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLF 177
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH------------ 93
G+KP++ +++ FC++G + + ++ G P+ +T L
Sbjct: 115 GIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQA 174
Query: 94 -----NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
V+ +G I++ +I LC VG+ AL LL + + P+ +Y+T+I
Sbjct: 175 FLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDS 234
Query: 149 L 149
+
Sbjct: 235 M 235
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 30/158 (18%)
Query: 2 YCNKNDFFEARKVIDYM-FDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+CN + EAR +++ M G P+V TY+I+ EA E + + + P
Sbjct: 334 FCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAP 393
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ TY++++DG CK GR + ME+L + + V P+V TFN+
Sbjct: 394 NAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVG------------------TFNS 435
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI ALC +G +D+A LL M HG P Y TL++
Sbjct: 436 VIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLE 473
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 29/175 (16%)
Query: 2 YCNKNDFFEARKVI-DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+CN EA K+ + + + + P+V TYT L +A +ML ++ P
Sbjct: 158 WCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVP 217
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVIDIGHI-- 101
+V TY++++ G CK G ++ ++L +G PNVVT LIH + +D +
Sbjct: 218 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 277
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T+++N ++ C +G+I++A L M +P R Y L++
Sbjct: 278 DEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVR 332
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLKP 49
YC EA+++ M P+ TYT L EA +L N+K G+ P
Sbjct: 299 YCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDP 358
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV TY+ V+ G+ + R E E + E I R V PN VT +++
Sbjct: 359 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT------------------YSS 400
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC G++D A+ +L M PS ++++I L
Sbjct: 401 LIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGAL 440
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 32/158 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKN-DGLKP 49
+C N +A + M + PN TY ++ +AYE+L +++ + P
Sbjct: 17 FCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAP 75
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFN 108
D+ TY+ V++GFCK G + E+L E + R G+ P+VV T+
Sbjct: 76 DLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVV------------------TYT 117
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+V+ LC GK+D+A ++ M G P + + LI
Sbjct: 118 SVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALI 155
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 31/171 (18%)
Query: 10 EARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPDVYTYTA 56
+A +V+ M D P++ TY+ + A E+L V DG+ PDV TYT+
Sbjct: 59 KAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNVIDIGH 100
V+DG C+ G+ + E++ E +GV P+ T + L+ I
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSS 178
Query: 101 I--PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ +I C G ++KA+ +L +M +P+ Y +L+ L
Sbjct: 179 SWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGL 229
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPDV 51
C D +A + M G PNV TYT L +A +LM+ + PD
Sbjct: 230 CKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDT 289
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y A++DG+C++GR E +L E + P+ IT+ ++
Sbjct: 290 VSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPD------------------RITYTCLV 331
Query: 112 QALCGVGKIDKALLLL 127
+ C ++++A LL
Sbjct: 332 RGFCNASRLEEARFLL 347
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +V+ M + P+V T+ + EA+++L+ + GL+P +
Sbjct: 406 CKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 465
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT +++GF + GR ME+ E E V+ + +P F+ +I
Sbjct: 466 VTYTTLLEGFSRTGR----MEIAYELFE------VMRKKAKKSSSAANLVPEQ-AFSALI 514
Query: 112 QALCGVGKIDKALLLL 127
+ LC +IDKA+ ++
Sbjct: 515 RGLCKAREIDKAMAVV 530
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 28/125 (22%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI------ 101
+P V T+T ++DGFCK + + + E + V PN T +NV+ G
Sbjct: 4 QPTVVTWTIIIDGFCKANQLKQALACF-EKMREFVAPNERT----YNVVVNGLCKARLTS 58
Query: 102 ----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH-GKIPSRTLYDT 144
P +T++ VI C G++D+A +L M G P Y +
Sbjct: 59 KAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118
Query: 145 LIKKL 149
++ L
Sbjct: 119 VVDGL 123
>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ A KV+D + + P V TYTIL EA ++L + GL PD+
Sbjct: 183 CNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDM 242
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YTY A++ G CK G +E +L+ E RG PN VT I + ++ G I
Sbjct: 243 YTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKV 302
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T +++ +I ALC G++D A+ ++ M +G +P Y+T++ L
Sbjct: 303 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL 357
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVY 52
C F E+ ++ + + GY P+V T L E +M + +PDV+
Sbjct: 79 CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVF 138
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNVIDIG--------- 99
Y AV+ GFCKV R ++LN RG P++VT + L N +G
Sbjct: 139 AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQL 198
Query: 100 ----HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+P IT+ +I+A G I++A+ LL M G +P Y+ +I+ + ++
Sbjct: 199 LLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKE 255
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 46/129 (35%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + E K++ MF G PN TY+IL EA +L + L PD
Sbjct: 253 CKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDT 312
Query: 52 YTYTAVMDGFCKVGR-----------------------------------SNEVMELLNE 76
Y+Y ++ CK GR +N+ +E+ N+
Sbjct: 313 YSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK 372
Query: 77 AIERGVTPN 85
G PN
Sbjct: 373 LRGMGCPPN 381
>gi|212275248|ref|NP_001130560.1| uncharacterized protein LOC100191659 [Zea mays]
gi|194689480|gb|ACF78824.1| unknown [Zea mays]
Length = 558
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 32/163 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + +A +V+D M G P + TY L EA E+L +K+ L P
Sbjct: 221 CLCKRGRVTKAMEVLDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTP 280
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+YT+T V+DGFCKVGR+ E + ++AI G++P T T+N
Sbjct: 281 DIYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPT------------------TFTYNA 322
Query: 110 VIQALCGVGKIDKALLLLFLM---YEHGKIPSRTLYDTLIKKL 149
++ C G KA LL M + +P +T + ++ L
Sbjct: 323 LLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTAL 365
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +P V T++AV+ CK GR + ME+L+ + G P +
Sbjct: 207 GFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLGCEPTIR------------------ 248
Query: 106 TFNNVIQALCGVGKIDKALLLL 127
T+N+++ LC VG++++AL LL
Sbjct: 249 TYNSLVGGLCYVGRLEEALELL 270
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
+ PD +++ + C+ G +E L+E + RG P+V T
Sbjct: 173 VAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVAT------------------ 214
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
F+ V+ LC G++ KA+ +L M G P+ Y++L+ L
Sbjct: 215 FSAVVGCLCKRGRVTKAMEVLDAMLGLGCEPTIRTYNSLVGGL 257
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 70/157 (44%), Gaps = 33/157 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y F EA + I M PN TY+ L A E+L NV KPD
Sbjct: 375 YSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVD----KPD 430
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT V++G C R+ E + LL E + + V P+V TFN+V
Sbjct: 431 VVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVG------------------TFNSV 472
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I ALC +G +D+A LL M HG P Y TL++
Sbjct: 473 IGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLE 509
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 21/121 (17%)
Query: 32 ILEAYEML--MNVKNDGL-KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
I EAYE+ M ++ DG KPDV TYTA++DGFCK G + M++L R PNVV
Sbjct: 167 IGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV- 225
Query: 89 LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
T+++++ LC G +D+AL L M G +P+ Y TLI
Sbjct: 226 -----------------TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHG 268
Query: 149 L 149
L
Sbjct: 269 L 269
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLKP 49
YC EA+++ M P+ TYT L EA +L N+K G+ P
Sbjct: 304 YCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDP 363
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI----------HLHNVI 96
DV TY+ V+ G+ + R E E + E I R V PN VT LI H V+
Sbjct: 364 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVL 423
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ VI+ LCG + ++AL LL M PS ++++I L
Sbjct: 424 KNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGAL 476
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 28/156 (17%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D + P+V TYT L +A +ML ++ P+V TY++++ G CK G +
Sbjct: 182 DGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLD 241
Query: 69 EVMELLNEAIERGVTPNVVT---LIH---LHNVIDIGHI-----------PRTITFNNVI 111
+ ++L +G PNVVT LIH + +D + T+++N ++
Sbjct: 242 QALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALL 301
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
C +G+I++A L M +P R Y L++
Sbjct: 302 DGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVR 337
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 31/135 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PN TY ++ +AYE+L +++ + PD+ TY+ V++GFCK G + E
Sbjct: 7 PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66
Query: 73 LLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+L E + R G+ P+VV T+ +V+ LC GK+D+A ++ M
Sbjct: 67 ILREMVTRDGMAPDVV------------------TYTSVVDGLCRDGKMDRACEMVREMK 108
Query: 132 EHGKIPSRTLYDTLI 146
G P + + LI
Sbjct: 109 LKGVEPDKFTFSALI 123
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 31/130 (23%)
Query: 10 EARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPDVYTYTA 56
+A +V+ M D P++ TY+ + A E+L V DG+ PDV TYT+
Sbjct: 27 KAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTS 86
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
V+DG C+ G+ + E++ E +GV P+ TF+ +I C
Sbjct: 87 VVDGLCRDGKMDRACEMVREMKLKGVEPD------------------KFTFSALITGWCN 128
Query: 117 VGKIDKALLL 126
K+D+AL L
Sbjct: 129 ARKVDEALKL 138
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 2 YCNKNDFFEARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C + + A +++ M +G P+V TYT + A EM+ +K G++P
Sbjct: 55 FCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEP 114
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAI--------------------ERGVTPNVVTL 89
D +T++A++ G+C + +E ++L E + ER +
Sbjct: 115 DKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELF 174
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D P +T+ +I C G ++KA+ +L +M +P+ Y +L+ L
Sbjct: 175 QEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGL 234
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 29/136 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKP-DV 51
C D +A + M G PNV TYT L +A +LM+ P D
Sbjct: 235 CKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADT 294
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y A++DG+C++GR E +L E + P+ IT+ ++
Sbjct: 295 VSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPD------------------RITYTCLV 336
Query: 112 QALCGVGKIDKALLLL 127
+ C ++++A LL
Sbjct: 337 RGFCNASRLEEARFLL 352
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +++ M + P+V T+ + EA+++L+ + GL+P +
Sbjct: 442 CGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 501
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT +++GF + GR EL E + R + +P F+ +I
Sbjct: 502 VTYTTLLEGFSRTGRMEIAYELF-EVMRRKAKKSSSA---------ANLVPEQ-AFSALI 550
Query: 112 QALCGVGKIDKALLLL 127
+ LC +IDKA+ ++
Sbjct: 551 RGLCKAREIDKAMAVV 566
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V+ M DNG+ P+V TY L +A +L ++K GL PDV +Y+ V+
Sbjct: 398 EAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVL 457
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
GFC+ +E + + + + +G+ P+ +T L ++ +G
Sbjct: 458 SGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLP 517
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
P T+ +I A C G + KA+ L M E G +P Y LI L++Q
Sbjct: 518 PDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQA 569
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + D M G PNV TY L + +E+L ++ GL+P+
Sbjct: 215 FCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPN 274
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y V++G C+ GR E+ +L E +RG + + VT L+
Sbjct: 275 LISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA 334
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G P IT+ ++I ++C G +++A L M G P+ Y TL+ Q+
Sbjct: 335 EMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A + +D M G PN TYT L EAY +L + ++G P V
Sbjct: 356 CKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSV 415
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY A+++G C G+ + + +L + E+G+TP+VV+ L
Sbjct: 416 VTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRK 475
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P TIT++++IQ C + +A L M G P Y LI
Sbjct: 476 MVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALI 527
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D EA +V M G P+ TY+ L EA ++ + GL PD
Sbjct: 460 FCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPD 519
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYTA+++ +C G + ++L NE +E+GV P+VV T++ +
Sbjct: 520 EFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVV------------------TYSVL 561
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I L + +A LL ++ +PS Y TLI+
Sbjct: 562 INGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 36/178 (20%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
+K + A V M + PNV TY IL A ++ G P+V
Sbjct: 182 SKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVV 241
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI---------------- 96
TY ++DG+CK+ + ++ ELL +G+ PN+++ +NV+
Sbjct: 242 TYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLIS----YNVVINGLCREGRMKEISFV 297
Query: 97 -----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ +T+N +I+ C G +AL++ M HG PS Y +LI +
Sbjct: 298 LTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSM 355
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A ++ M +G +P++ +Y L A E+L +K+ G P
Sbjct: 337 FCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPV 396
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+ +Y V+DG K G++ E +ELLNE + +G+ P+++T + +
Sbjct: 397 LISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFC 456
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D+G P T+ +N ++ LC A+ L M +G +P+ + Y LI+ L
Sbjct: 457 KVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGL 512
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ + +A K++D M D G P++ TY ++ +A E L ++ + G +P+
Sbjct: 198 CKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNT 257
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+Y V+ G C R + +L+ E +G PNVVT LI L
Sbjct: 258 VSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQ 317
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P ++++N ++ A C K+D+A+ + LM G P Y+TL+ L
Sbjct: 318 IPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTAL 372
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 42/187 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A V+D M G P+V TYTIL +A ++L +++ G PD+
Sbjct: 163 CGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDI 222
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY V++G C+ GR ++ ME L G PN V+ +N++
Sbjct: 223 VTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVS----YNIVLKGLCTAERWEDAEK 278
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---- 146
G P +TFN +I LC G ++ A+ +L + ++G P+ Y+ ++
Sbjct: 279 LMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFC 338
Query: 147 --KKLDQ 151
KK+D+
Sbjct: 339 KQKKMDR 345
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI---------------- 90
++PD YTY ++ G C GR++ + +L++ + RG P+VVT
Sbjct: 148 MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAV 207
Query: 91 -HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L + D G P +T+N V+ +C G++D A+ L + +G P+ Y+ ++K L
Sbjct: 208 KLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGL 267
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+PDV +Y A++ G+C G+ + L V + P T T+
Sbjct: 117 EPDVMSYNAMVAGYCVTGQLDNARRL---------------------VAAMPMEPDTYTY 155
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
N +I+ LCG G+ D AL +L M G +P Y L++
Sbjct: 156 NTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLE 195
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F A V M DNG+ PN TY L E +ML + GLKPD
Sbjct: 245 CKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDC 304
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------LHNVIDI 98
YTY ++++ CK GR E + I +G+ P V T LIH +H+ +D+
Sbjct: 305 YTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDL 364
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN A G IDKA+ + M +HG P+ Y LI L
Sbjct: 365 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDAL 419
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E +D M +NG P+ + I +A ++ ++ GL P+
Sbjct: 349 YATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPN 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V Y A++D CK+GR ++ N+ I GVTPN+V FN++
Sbjct: 409 VVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV------------------VFNSL 450
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC V K ++A L++ M + G P+ ++TLI L
Sbjct: 451 VYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNL 489
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + + A +++ M D G PN + ++E ++ +++ G++PD
Sbjct: 455 CTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDA 514
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
++YT ++ G+C GR++E ++ + ++ IG P +T+N ++
Sbjct: 515 FSYTPLISGYCLTGRTDEAEKVFD------------------GMVSIGLSPTEVTYNTLL 556
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C +ID A L M G P Y+T++ L Q
Sbjct: 557 HGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQ 596
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPD 50
YC+ + +A + M G P V TY TIL EA E+ +N+ N G K D
Sbjct: 559 YCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCD 618
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-- 98
+YTY +++G CK +E ++ +G+ N++T + + +D+
Sbjct: 619 IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFA 678
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P +T+ V + L G +++ L M ++G P+ + + L+++L
Sbjct: 679 AIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 734
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 31/175 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH---PNVTTYTIL-----------EAYEMLMNVKNDGLK 48
CN+ EA +++ M D+ PNV +Y+I+ + Y + + + + G+
Sbjct: 172 CNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIP 231
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
PDV TYT V+DG CK + + + I+ G PN T LIH
Sbjct: 232 PDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQM 291
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + G P T+ +++ LC G+ +A M G P + Y LI
Sbjct: 292 LEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILI 346
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE---RGVTPNVVTLIHLHN 94
+L + G PD +YT ++ G C R+ E +ELL+ + R PNVV+ + N
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVIN 207
Query: 95 -----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ID G P +T+ VI LC D+A + M ++G P
Sbjct: 208 GFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKP 267
Query: 138 SRTLYDTLI 146
+ Y+ LI
Sbjct: 268 NNYTYNCLI 276
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA KV D M G P TY L +AY + + G+ P
Sbjct: 524 YCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPG 583
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V TY ++ G + R +E EL I G ++ T
Sbjct: 584 VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQ 643
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G ITF +I AL G+ + A+ L + +G +P+ Y + + L ++
Sbjct: 644 SLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEE 702
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++ M NGY +V TYT L A +L + + G P+V
Sbjct: 21 CKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNV 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHN----------- 94
TYTA++DG CK R ++ ++ + + G P++VT LIH + N
Sbjct: 81 VTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQE 140
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G IP +T+N I LC GK+DK L +L M G P + ++I L
Sbjct: 141 LMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGL 196
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 29/178 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A+ ++ M D G PNV TYT L +A + + + G +PD+
Sbjct: 56 CKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDL 115
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNE-AIERGVTPNVVTL----------------IHLHN 94
TY +++ G C R ++ +L E IE G P+VVT + +
Sbjct: 116 VTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLE 175
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+D G I P +TF ++I LC +ID A + M E G +P Y ++ L +
Sbjct: 176 EMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSR 233
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 29/150 (19%)
Query: 3 CNKNDFFEARKVI-DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C N +A V+ + M ++G P+V TY + EML + G+ PD
Sbjct: 126 CMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPD 185
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNV-------------- 95
V T+ +++ G CK R ++ ++ +ERG P+ +T I L N+
Sbjct: 186 VVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLE 245
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKA 123
+ GH + T+ +I AL G I+ A
Sbjct: 246 HMVKSGHYALSATYAPLIHALIRAGDIESA 275
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 29/144 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C F A+ ++ M ++G PN+ +Y + +A+++ + + G KPD
Sbjct: 302 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPD 361
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V + ++ GFCK GR ++ +LL E + + +P +T+N +
Sbjct: 362 VIFFNTLISGFCKAGRLSQAQQLLKEMKAKNIC-----------------VPDVVTYNTM 404
Query: 111 IQALCGVGKIDKALLLLFLMYEHG 134
I G + +A LLL M G
Sbjct: 405 IDGQSKFGSLKQAKLLLEEMQAVG 428
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 53/153 (34%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVME-----------------------------------LL 74
D Y ++ G CK + +E LL
Sbjct: 9 DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68
Query: 75 NEAIERGVTPNVVTLIHL----------HNVIDI-------GHIPRTITFNNVIQALCGV 117
+ + G PNVVT L H+ I G P +T+N++I LC
Sbjct: 69 QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMA 128
Query: 118 GKIDKA-LLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D A L+L LM E G+IP Y+T I L
Sbjct: 129 NRMDDAGLVLQELMIESGRIPDVVTYNTFISGL 161
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ +A +V+ + +P+V T T+L +A ++ ++N G KPDV
Sbjct: 192 CDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDV 251
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY ++ GFCK GR +E + L + G P+V++ + L
Sbjct: 252 VTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLAT 311
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G +P +TFN +I LC G + KAL +L +M +HG P+ ++ LI+
Sbjct: 312 MLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQ 364
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN A + ++ M G +P++ TY IL +A +L + + G P
Sbjct: 366 FCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPS 425
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y V+DG KVG++ +ELL E +G+ P+++T + H
Sbjct: 426 LISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFH 485
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ P +N++I LC + A+ L M G P+ Y TLIK
Sbjct: 486 YLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIK 539
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A K+ + M + G P+V TY +L EA L + + G +PDV
Sbjct: 227 CKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDV 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----------NVIDI 98
++ ++ C GR + M+LL + +G P+VVT LI+ NV+++
Sbjct: 287 ISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEM 346
Query: 99 ----GHIPRTITFNNVIQ-----------------------------------ALCGVGK 119
GH P + +FN +IQ ALC GK
Sbjct: 347 MPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGK 406
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D A+++L + G PS Y+T+I L
Sbjct: 407 VDDAVVILSQLSSKGCSPSLISYNTVIDGL 436
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C A +++ + ++G +VT+Y +L E E L + G+ P+ T
Sbjct: 124 FCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRMGVSPNAAT 183
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVI 96
Y AV+ C G+ + M++L ++ P+VVT L + +
Sbjct: 184 YDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMR 243
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+N +I+ C G++D+A+ L + +G P ++ +++ L
Sbjct: 244 NKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSL 296
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 21/116 (18%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E L + N G PDV TA++ FCK+GR+ +++ E G
Sbjct: 97 EGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGA----------- 145
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
VID+ ++N +I C G+I++AL +L M G P+ YD ++ L
Sbjct: 146 -VIDV------TSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSL 191
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 18/131 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI 90
EAY++L + G PD++TYT ++ GFCK +S++ + + + + RG P+VVT LI
Sbjct: 72 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 131
Query: 91 -------HLHNVIDI--------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
L ID+ +P T+T+N++I C +GK+D+A+ LL M E G
Sbjct: 132 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 191
Query: 136 IPSRTLYDTLI 146
P Y TL+
Sbjct: 192 SPDVVTYTTLM 202
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGY-HPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + EA + M +G PN TY L EA +L + G PD
Sbjct: 135 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 194
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDIGHI-- 101
V TYT +M+GFCK+ R ++ +LLN+ +G+TPNVVT L + + D HI
Sbjct: 195 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILG 254
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N ++ C V ++++A F++ E P+ ++ +I+ L
Sbjct: 255 EMRRKSCSPTVYTYNTILDGYCRVNQLEEA--RKFMLEEMDCPPNVVSFNIMIRGL 308
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKP 49
+C +A +V + + G+ P+V TY+ L EA ++ +K+ P
Sbjct: 99 FCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMP 158
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI- 98
+ TY +++ GFC++G+ +E M LL E G +P+VVT L L + D+
Sbjct: 159 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 218
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +TF +++ LC ++ A+ +L M P+ Y+T++
Sbjct: 219 NQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTIL 272
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 40/186 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +++ M + G P+V TYT L +AY++L + GL P+
Sbjct: 170 FCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPN 229
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V T+T++MDG C+ R ++ + +L E + +P V T +N I G+
Sbjct: 230 VVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT----YNTILDGYCRVNQLEEAR 285
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI----- 146
P ++FN +I+ LC V + +A+ L+ P +Y T+I
Sbjct: 286 KFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCR 345
Query: 147 -KKLDQ 151
KK+D+
Sbjct: 346 EKKVDE 351
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 30/154 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKNDGLK---------PDVY 52
C +N +A ++ M P V TY TIL+ Y +N + K P+V
Sbjct: 241 CRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGY-CRVNQLEEARKFMLEEMDCPPNVV 299
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
++ ++ G CKV RS+E MEL+ EA R P+VV + VI
Sbjct: 300 SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV------------------MYTTVID 341
Query: 113 ALCGVGKIDKALLLLFLMYEH-GKIPSRTLYDTL 145
LC K+D+A + M E G +P+ Y T
Sbjct: 342 VLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------------- 92
P TY +++ G CK R++E +LL E + G P++ T L
Sbjct: 52 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLIK 147
++ G P +T++ +I LC G++ +A+ L M + G +P+ Y++LI
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 168
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 25/162 (15%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
K D F +ID + +G +TT EA +M + G+ PDV Y+++MDG C+
Sbjct: 1082 KGDVFTYGMIIDALCKDG----MTT----EALDMFSEMIGAGILPDVVVYSSLMDGLCRF 1133
Query: 65 GRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITF 107
GR E +E E RG++ +V T LIH L+ ++D G P TF
Sbjct: 1134 GRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTF 1193
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC GK+ +A +L LM GK P Y+TL+ L
Sbjct: 1194 TILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGL 1235
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 15 IDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
++ M D G+ P+ T+TIL EA ++L +++ G +PD+ TY +M+G C
Sbjct: 1178 LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCL 1237
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
VG+ + +L +RG+ NV ++N +I C KID+A
Sbjct: 1238 VGQLEDATKLFESLADRGIKLNV------------------FSYNILINGYCKDQKIDEA 1279
Query: 124 LLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
M G PS Y+TLI L Q
Sbjct: 1280 FRFFEEMRPKGLKPSTVTYNTLIGALCQ 1307
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA + + M G P+ TY L A ++ + ++ G
Sbjct: 1270 YCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK 1329
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHI-------- 101
+ TY ++DG CK G E M+L + PN+ V I L + G +
Sbjct: 1330 LSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFD 1389
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P TI +N +I LC G + +A+ LL+ M E G +P ++ +I+ L
Sbjct: 1390 EISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 1445
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + + PN+ ++IL EA++ + +GL+PD
Sbjct: 1341 CKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDT 1400
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +++G C G +E ++LL + E+G P+ +ITFN +I
Sbjct: 1401 IAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD------------------SITFNVII 1442
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
Q L +I +A+ LL M P + L+
Sbjct: 1443 QNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A++++D M + G P+V +YT L EA E+L + +G++P+V
Sbjct: 202 CKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNV 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDG CK G S++ MELL + R + PN+V T++ +I
Sbjct: 262 FTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMV------------------TYSTLI 303
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK +A+ +L M G P +Y +I L
Sbjct: 304 NGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGL 341
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 18 MFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
M + G P V + IL A+ + + N G +PD YTY +++G CK+G
Sbjct: 146 MREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLG 205
Query: 66 RSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFN 108
+ ++ ELL+E E+G++P+VV +LIH L +I G P T++
Sbjct: 206 KISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYS 265
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ LC G +A+ LL +M +P+ Y TLI L
Sbjct: 266 SLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGL 306
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++++ M PN+ TY+ L EA E+L ++ GLKPD
Sbjct: 272 CKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDA 331
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---IHLHNVIDIGHI------- 101
Y ++ G C E ++E G++PN + + +HN++ G
Sbjct: 332 GMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTR 391
Query: 102 ---------PRTI-----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
R I TF+ +++ C G ++KA +L M G IP +++ L+
Sbjct: 392 AFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLM 450
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
L+A + +++ +KP +Y V D + + E E+G+ P VV+L L
Sbjct: 102 LDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNIL 161
Query: 93 HNVI------------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ + G P + T+ +I LC +GKI +A LL M E G
Sbjct: 162 IKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKG 221
Query: 135 KIPSRTLYDTLIKKLDQQ 152
PS Y +LI L Q
Sbjct: 222 LSPSVVSYTSLIHGLCQS 239
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCNK D A D M G P+V+TY +L EA +M+ ++ G+ PD
Sbjct: 364 YCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPD 423
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
TY +++G+ + G + + +L NE + +G+ P VT L
Sbjct: 424 AITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFE 483
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D G P I FN ++ C G +++A +LL M P ++TL++
Sbjct: 484 KILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 537
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPDV 51
C + +AR+ I +M G+ PNV +Y TI+ Y N++ G++PD
Sbjct: 260 CKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDS 319
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY +++ G CK GR E L ++ +E G+ PN V T+N +I
Sbjct: 320 YTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV------------------TYNTLI 361
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G +++A M + G +PS + Y+ L+ L
Sbjct: 362 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 399
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ + AR+++D M G P+ TY L EA + + GL P+
Sbjct: 294 YSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPN 353
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY ++DG+C G +E +++G+ P+V T L+H +
Sbjct: 354 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 413
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G IP IT+N +I G KA L M G P+ Y +LI L ++
Sbjct: 414 EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 472
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+N EA + + + D G P+V + + A+ +L + + PD T
Sbjct: 472 RNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVT 531
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------NVI 96
+ +M G C+ G+ E LL+E RG+ P+ + TLI + ++
Sbjct: 532 FNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEML 591
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IG P +T+N +I+ LC + D A LL M G P + Y +LI+ +
Sbjct: 592 SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 17/113 (15%)
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN----------VID 97
VYT+ +++ CK G+ + E + G PNVV T+IH ++ ++D
Sbjct: 249 VYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILD 308
Query: 98 IGHI----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ P + T+ ++I +C G++++A L M E G +P+ Y+TLI
Sbjct: 309 AMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 361
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D +A +V D M G++P + TY L A E+L + N G+ PD
Sbjct: 574 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633
Query: 51 VYTYTAVMDGFCKV 64
TY ++++G V
Sbjct: 634 DSTYLSLIEGMGNV 647
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 28/151 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A +++ M G+ P+ +TYT + +++ + +K G+ P
Sbjct: 426 CLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNP 485
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + +E G +PNVVT L+H
Sbjct: 486 DVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIF 545
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
H ++D P +T++ +I LC G+I KA
Sbjct: 546 HRMVDAACYPNAVTYSALIDGLCKAGEIQKA 576
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A++V M GY P+V TYT L A ++L + ND P+
Sbjct: 653 FCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPN 712
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TYTA++DG KVG + + LL+ E+G +PNVVT L
Sbjct: 713 VVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFK 772
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ G P +T+ +I C G +D+A LLL
Sbjct: 773 QMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLL 806
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +AR D M G PNV TYT +++A+++ + + P+
Sbjct: 497 FCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPN 556
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG----------------VTPNVVTLIHL-- 92
TY+A++DG CK G + E+ + I + PNVVT L
Sbjct: 557 AVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALID 616
Query: 93 -----------HNVID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
H ++D G P I ++ +I C +GKID A + M + G +P
Sbjct: 617 GLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLP 676
Query: 138 SRTLYDTLIKKL 149
S Y +LI ++
Sbjct: 677 SVHTYTSLIDRM 688
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L +A+E+L + G +P+ Y A++DGFCK+G+ + E+
Sbjct: 606 PNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEV 665
Query: 74 LNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVIQALCG 116
+ G P+V T L +++ P +T+ +I L
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSK 725
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
VG+I+KAL LL LM E G P+ Y LI L
Sbjct: 726 VGEIEKALNLLSLMEEKGCSPNVVTYTALIDGL 758
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 22 GYHPNVTTYT--ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79
GYH V ++ + + +L +++ P Y ++D F K GR +EL E +E
Sbjct: 820 GYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVE 879
Query: 80 RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+ N+ + T + ++IQALC ++++A L M G +P
Sbjct: 880 VSSSLNMTS---------------TGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDL 924
Query: 140 TLYDTLIKKL 149
++ +L+K L
Sbjct: 925 IVFVSLVKGL 934
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 34/178 (19%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTA 56
F EA + M N PNV TY T+L + ++ + +G P+ + +
Sbjct: 287 FNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNS 346
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT----------- 104
++ G+C G +L N G P V I + ++ +P
Sbjct: 347 LVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYE 406
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ N + LCGVGK +KA +L M G +P + Y +I L Q
Sbjct: 407 EMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQ 464
Score = 42.4 bits (98), Expect = 0.063, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 60/162 (37%), Gaps = 35/162 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI----LEAYEMLMNVKNDGLKPDVY----T 53
YCN D+ A K+ + M G P Y I + E L N + L VY
Sbjct: 351 YCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLA 410
Query: 54 YTAVMDG---------FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+ V++ C VG+ + ++L E + +G P+ T
Sbjct: 411 ASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPD------------------T 452
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ VI LC K++K+ LL M G P Y LI
Sbjct: 453 STYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILI 494
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 28/151 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A +++ M G+ P+ +TYT + +A+ + +K G+ P
Sbjct: 426 CLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNP 485
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDIG 99
DVYTYT ++D FCK G + +E G +PNVVT L+H L+ DI
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545
Query: 100 H-------IPRTITFNNVIQALCGVGKIDKA 123
H P IT++ +I LC G+I KA
Sbjct: 546 HRMVGDACYPNAITYSALIDGLCKAGEIQKA 576
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A++V M GY P+V TYT L A ++L + D P+
Sbjct: 653 FCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPN 712
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYTA++DG CK G + + + LL+ ++G +PNVV T+ +
Sbjct: 713 VVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVV------------------TYTAL 754
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L GK+D L L M G P+ Y LI
Sbjct: 755 IDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILI 790
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A+ D M G PNV TYT L +A ++ + D P+
Sbjct: 497 FCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPN 556
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG----------------VTPNVVTLIHL-- 92
TY+A++DG CK G + E+ + I ++PNVVT L
Sbjct: 557 AITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVN 616
Query: 93 -----------HNVID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
H+++D G P I ++ ++ C VG+ID A + M + G +P
Sbjct: 617 GLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLP 676
Query: 138 SRTLYDTLIKKL 149
S Y +LI ++
Sbjct: 677 SVHTYTSLIDRM 688
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
++DF+ K D + PNV TY L +A+++L + G +P+
Sbjct: 591 ESDFYFEGKDTDTI-----SPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIV 645
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI----------- 101
Y A++DGFCKVG + E+ + G P+V T L + G +
Sbjct: 646 YDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQML 705
Query: 102 -----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ ++ LC G+ +KAL LL LM + G P+ Y LI L
Sbjct: 706 KDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGL 758
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 57/162 (35%), Gaps = 35/162 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI----LEAYEMLMNVKNDGLKPDVYTYTAV 57
YCN D+ A K+ + M G P Y I + E L N + L VY V
Sbjct: 351 YCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLV 410
Query: 58 MDG-------------FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
C VG+ + +++ E + +G P+ T
Sbjct: 411 ASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDAST---------------- 454
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ VI LC ++DKA LL M + G P Y LI
Sbjct: 455 --YTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILI 494
Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 22 GYHPNVTTYT--ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79
GY V ++ L + +L +++ P Y ++D F K GR +EL E +E
Sbjct: 820 GYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMME 879
Query: 80 RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+ N+ + +H ++IQALC ++++A+ L M G +P
Sbjct: 880 VSSSLNMASK-DMHT--------------SLIQALCLSSQVEEAVALYSEMRRRGIVPDL 924
Query: 140 TLYDTLIKKL 149
+ + L+K L
Sbjct: 925 SAFVCLVKGL 934
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 34/178 (19%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTA 56
F EA + M N Y PNV TY T+L + ++ + +G P + +
Sbjct: 287 FNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNS 346
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPN-VVTLIHLHNVIDIGHIPR------------ 103
++ +C +L N G P VV I + ++ +P
Sbjct: 347 LVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYE 406
Query: 104 ----------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I N + LCGVGK +KA ++ M G +P + Y +I L Q
Sbjct: 407 EMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQ 464
>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
Length = 849
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D A +++ M +G+ P + T+L EA L ++ +G P
Sbjct: 534 CLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQLCKNGRAIEASNFLADMVCEGFLP 593
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
D+ +Y+A MDG K+ + + +EL + RG P+VV+ LI L
Sbjct: 594 DIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFL 653
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H + G +P +++N +I C G IDKA+L L M E K P+ Y TLI
Sbjct: 654 HKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLI 707
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 33/162 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA + M G P+ +Y +L +A L + + KP
Sbjct: 640 YCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPT 699
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ +YT +++G C GR ++ L NE E+G +PN IT+ +
Sbjct: 700 IISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPN------------------RITYMAI 741
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIP----SRTLYDTLIKK 148
+ LC GK D+AL+ M E P S L D I K
Sbjct: 742 VHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFISK 783
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV--VTLI- 90
E+Y++L +++ L+P +TY ++ C+ + +ELL E G P + TL+
Sbjct: 508 ESYKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLV 567
Query: 91 --------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L +++ G +P ++++ + L + K+D+AL L + G
Sbjct: 568 KQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCR 627
Query: 137 PSRTLYDTLIK 147
P ++ LIK
Sbjct: 628 PDVVSHNILIK 638
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 6 NDFFEARKVIDYMFDNGYHPNV------TTYTILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
N F+ + +D N Y N T +I LM +K+ G + D YT T V+
Sbjct: 177 NYLFDQVRSMDLCIPNNYSYNCLLEILSKTNSIDSIENRLMEMKDFGWEVDKYTLTPVLM 236
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+C G+ ++ + + N+ ERG V I G + RT+ F
Sbjct: 237 AYCNAGKFDKALIVFNDMHERGWVDGYVFSILALAFSKWGEVDRTMQF 284
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN +A+ + + M + G PN TY + EA +++ +KPD
Sbjct: 711 CNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDS 770
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y A++D F + +L E IE+G P+ P + +
Sbjct: 771 YVSVALIDAFISKHNFSMAFNILKETIEKGNIPD----------------PTDKNYVTIK 814
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
A+ + K ++ L + + E G+IP+
Sbjct: 815 DAIFKLSKDEQTGLEVKALIEKGRIPT 841
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------VID 97
G DV Y ++ G CK + M L + G+TP+V L L ++
Sbjct: 327 GFTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQILAKLVASSPEERVVIML 386
Query: 98 IGHIPRTIT-------FNNVIQALCGVGKIDKALLLLFLM 130
+G P+ I FN+V++ L GK++ LL LM
Sbjct: 387 LGERPKDINDEGMIFLFNSVLKFLVNAGKVESTCYLLQLM 426
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
+A+ V+ M + G P+V TY L A E+L +++N G KP+VY+YT +
Sbjct: 365 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTIL 424
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDI----------GH 100
+DGFCK+G+ +E LLNE G+ PN V L H + + G
Sbjct: 425 VDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 484
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TFN++I LC V +I AL LL M G + + Y+TLI
Sbjct: 485 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 530
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +++ M +G PN + L EA E+ + G KPD
Sbjct: 428 FCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 487
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
VYT+ +++ G C+V + LL + I GV N VT L N
Sbjct: 488 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 547
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G + IT+N++I+ LC G++DKA L M G +PS + LI L
Sbjct: 548 EMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGL 603
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + + EARK+++ M G + TY L +A + + DGL P
Sbjct: 533 FLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPS 592
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI-------- 101
+ +++G C+ G E +E E + RG TP++VT L N + G I
Sbjct: 593 SISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 652
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+T+N ++ LC G + A LLL E G +P+ + L++ L Q
Sbjct: 653 KLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQ 711
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N+ A V+ M +G PN Y L EA ++L + G PD
Sbjct: 222 CAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDA 281
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--------- 101
T+ V+ G CK R NE +++N + RG TP+ +T +L N + IG +
Sbjct: 282 ETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYR 341
Query: 102 ---PRTITFNNVIQALCGVGKIDKALLLLF-LMYEHGKIPSRTLYDTLI 146
P ++ FN +I G++D A +L ++ +G +P Y++LI
Sbjct: 342 IPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 390
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH- 91
Y+ML + + P ++T+ VM C V + + +L + + G PN V TLIH
Sbjct: 200 YDML----SRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHS 255
Query: 92 -------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
L + +G +P TFN+VI LC +I++A ++ M G P
Sbjct: 256 LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPD 315
Query: 139 RTLYDTLIKKL 149
Y L+ L
Sbjct: 316 DITYGYLMNGL 326
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P TF V++ALC V ++D AL +L M +HG +P+ +Y TLI L +
Sbjct: 209 PTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSK 258
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKP 49
C+C + +A M G PN+ T+ T+++ Y ++L+ + G KP
Sbjct: 471 CFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKP 530
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI--- 105
D++T+++++DG C+ + + + +E + G++PN VT I +H++ IG +PR++
Sbjct: 531 DIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLL 590
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+FN +IQ+ C +GK++ A L M G IP Y IK
Sbjct: 591 RKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIK 645
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C D E ++D + G +TY L E + DGL
Sbjct: 401 CLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLC 460
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
+V +Y V+D FCK ++ E +G+ PN+VT L +
Sbjct: 461 NVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLL 520
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G P TF+++I LC +I+ AL M G P+ Y+ LI L
Sbjct: 521 VMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSL 577
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D + K++ M +G +P+V ++ L +A ++ ++ + GL PD
Sbjct: 578 CIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDN 637
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
YTY A + FC+ GR NE EL G P+ T
Sbjct: 638 YTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFT 674
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +++ M GY PNV TYTIL EA+ +L +K + P
Sbjct: 263 CRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSE 322
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG------VTPNVVTLIHLHNVI--------- 96
T + + G + N+ EL E IER ++ + N+
Sbjct: 323 ATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKK 382
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IGH P + TFN + L +++ +L E G + Y LIK L
Sbjct: 383 FGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKAL 437
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
AY + D KPD +TY ++ G C+ G +E + L+ + G +PNV T
Sbjct: 236 AYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFT 289
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+ TY IL EA ++ ++ G P+V+TYT ++DGF + +E +
Sbjct: 250 PDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRV 309
Query: 74 LNEAIERGVTPNVVTL 89
L R V+P+ T+
Sbjct: 310 LETMKARKVSPSEATI 325
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
EA +L G KPD T+ M+ K NEV +L+ +E+G+ T + L
Sbjct: 375 EAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALI 434
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ ++ G + ++N VI C +DKA M G
Sbjct: 435 KALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIP 494
Query: 137 PSRTLYDTLI 146
P+ ++TLI
Sbjct: 495 PNLVTFNTLI 504
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKP 49
C+ +A +++ M D G+ PN+ T+ T++ Y L NV N G P
Sbjct: 442 CFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMP 501
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------- 101
D+ T+T+++DG C + ++ E E GV PN T + +H + GH+
Sbjct: 502 DIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLL 561
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +FN +I + C + K+DKA + M G +P Y++LIK L
Sbjct: 562 NKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 618
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 29/137 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + +A + M + G PN TY +L +A ++L +K DG+ PD
Sbjct: 514 CNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDA 573
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y++ A++ FC++ + ++ ++ N+ + GV P+ + T+N++I
Sbjct: 574 YSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD------------------SYTYNSLI 615
Query: 112 QALCGVGKIDKALLLLF 128
+ALC +++KA +LF
Sbjct: 616 KALCDERRVNKAKEILF 632
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +V M G P+ Y L AY + DG +PD +TY +++
Sbjct: 172 AHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVH 231
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C+ G +E + L+ + G+ PNV T+ ++ C G+
Sbjct: 232 GVCRRGIVDEAVRLVRQMEGEGIRPNV------------------FTYTMLVDGFCNAGR 273
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++A +L M E G PS Y TL+
Sbjct: 274 VEEAFRMLDKMKEKGVAPSEATYRTLV 300
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
EA ++ ++ +G++P+V+TYT ++DGFC GR E +L++ E+GV P+ TL+
Sbjct: 241 EAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLV 300
Query: 91 H 91
H
Sbjct: 301 H 301
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKN-------------DGLKPDVYTYTAVMD 59
+++D NG +P Y ++ + L+N KN GL V +Y V+D
Sbjct: 384 ELLDSFIKNGGNPGFDVYIMV--IKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVID 441
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F K G ++ E++ E ++G PN+ +TFN +I +G
Sbjct: 442 CFVKAGAVDKAEEIVKEMQDKGFLPNL------------------VTFNTLISGYSKLGN 483
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A ++L ++ EHG +P + +LI L
Sbjct: 484 VHNAKVVLKMLMEHGFMPDIITFTSLIDGL 513
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A+KV + M G PNV TY L EA + + GLKP+
Sbjct: 309 FCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY A+++GFCK E E+L++ +RG+ PNV ITFN +
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV------------------ITFNTL 410
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I A G++D A LL +M + G P+ + Y+ LI
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 26/139 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G PNV+TY L EA ++ ++ +GLK D+ TY ++D CK G
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGE 489
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ + + LL+E +TL+ G +T+N +I+ C GK+++A L
Sbjct: 490 TRKAVRLLDE----------MTLMEKK-----GRRANIVTYNVLIKGFCNKGKLEEANRL 534
Query: 127 LFLMYEHGKIPSRTLYDTL 145
L M E G IP+RT YD L
Sbjct: 535 LNEMLEKGLIPNRTTYDIL 553
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A +++ ++K G P V TY ++DG+CK G+ + LL E + + + PN +T L
Sbjct: 247 KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306
Query: 93 ------HNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
NV G P +T+N++I LC GK+D+AL L M G
Sbjct: 307 DGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK 366
Query: 137 PSRTLYDTLI 146
P+ Y+ LI
Sbjct: 367 PNVVTYNALI 376
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNV---KNDGL 47
+C + + EARK+ M NG ++ TY IL +A +L + + G
Sbjct: 449 FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGR 508
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIP 102
+ ++ TY ++ GFC G+ E LLNE +E+G+ PN T L + +++ G IP
Sbjct: 509 RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIP 564
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 18/97 (18%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V T+ V++G CKVG+ + +++ + G +P+V IT+N
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSV------------------ITYNT 269
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I C GK+ KA LL M P+ ++ LI
Sbjct: 270 IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKP 49
C+ +A +++ M D G+ PN+ T+ T++ Y L NV N G P
Sbjct: 442 CFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMP 501
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------- 101
D+ T+T+++DG C + ++ E E GV PN T + +H + GH+
Sbjct: 502 DIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLL 561
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +FN +I + C + K+DKA + M G +P Y++LIK L
Sbjct: 562 NKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 618
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 29/137 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + +A + M + G PN TY +L +A ++L +K DG+ PD
Sbjct: 514 CNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDA 573
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y++ A++ FC++ + ++ ++ N+ + GV P+ + T+N++I
Sbjct: 574 YSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD------------------SYTYNSLI 615
Query: 112 QALCGVGKIDKALLLLF 128
+ALC +++KA +LF
Sbjct: 616 KALCDERRVNKAKEILF 632
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +V M G P+ Y L AY + DG +PD +TY +++
Sbjct: 172 AHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVH 231
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C+ G +E + L+ + G+ PNV T+ ++ C G+
Sbjct: 232 GVCRRGIVDEAVRLVRQMEGEGIRPNV------------------FTYTMLVDGFCNAGR 273
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++A +L M E G PS Y TL+
Sbjct: 274 VEEAFRMLDKMKEKGVAPSEATYRTLV 300
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 14/88 (15%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G P+ TY L EA ++ ++ +G++P+V+TYT ++DGFC GR
Sbjct: 214 MPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGR 273
Query: 67 SNEVMELLNEAIERGVTPNVV---TLIH 91
E +L++ E+GV P+ TL+H
Sbjct: 274 VEEAFRMLDKMKEKGVAPSEATYRTLVH 301
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKN-------------DGLKPDVYTYTAVMD 59
+++D NG +P Y ++ + L+N KN GL V +Y V+D
Sbjct: 384 ELLDSFIKNGGNPGFDVYIMV--IKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVID 441
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F K G ++ E++ E ++G PN+ +TFN +I +G
Sbjct: 442 CFVKAGAVDKAEEIVKEMQDKGFLPNL------------------VTFNTLISGYSKLGN 483
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A ++L ++ EHG +P + +LI L
Sbjct: 484 VHNAKVVLKMLMEHGFMPDIITFTSLIDGL 513
>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
Length = 682
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKP 49
C+ +A +++ M D G+ PN+ T+ T++ Y L NV N G P
Sbjct: 428 CFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMP 487
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------- 101
D+ T+T+++DG C + ++ E E GV PN T + +H + GH+
Sbjct: 488 DIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLL 547
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +FN +I + C + K+DKA + M G +P Y++LIK L
Sbjct: 548 NKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 604
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 29/137 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + +A + M + G PN TY +L +A ++L +K DG+ PD
Sbjct: 500 CNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDA 559
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y++ A++ FC++ + ++ ++ N+ + GV P+ + T+N++I
Sbjct: 560 YSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD------------------SYTYNSLI 601
Query: 112 QALCGVGKIDKALLLLF 128
+ALC +++KA +LF
Sbjct: 602 KALCDERRVNKAKEILF 618
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
A +V M G P+ YT AY + DG +PD +TY +++ G C+ G +E
Sbjct: 172 AHEVFVQMPRLGLRPSTAVYT---AYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEA 228
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+ L+ + G+ PNV T+ ++ C G++++A +L M
Sbjct: 229 VRLVRQMEGEGIRPNV------------------FTYTMLVDGFCNAGRVEEAFRMLDKM 270
Query: 131 YEHGKIPSRTLYDTLI 146
E G PS Y TL+
Sbjct: 271 KEKGVAPSEATYRTLV 286
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
EA ++ ++ +G++P+V+TYT ++DGFC GR E +L++ E+GV P+ TL+
Sbjct: 227 EAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLV 286
Query: 91 H 91
H
Sbjct: 287 H 287
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKN-------------DGLKPDVYTYTAVMD 59
+++D NG +P Y ++ + L+N KN GL V +Y V+D
Sbjct: 370 ELLDSFIKNGGNPGFDVYIMV--IKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVID 427
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F K G ++ E++ E ++G PN+ +TFN +I +G
Sbjct: 428 CFVKAGAVDKAEEIVKEMQDKGFLPNL------------------VTFNTLISGYSKLGN 469
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A ++L ++ EHG +P + +LI L
Sbjct: 470 VHNAKVVLKMLMEHGFMPDIITFTSLIDGL 499
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+K + + D M + G PNV Y+ L EA +L + G++PD
Sbjct: 90 FCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPD 149
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
VYTYT ++ G CK GR+ + ++L + E+G P+ VT L N
Sbjct: 150 VYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFE 209
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLIKKL 149
+++ G +++N +I LC GK+D+A+ L + E G P ++T+I+ L
Sbjct: 210 TMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGL 267
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ M + PN TY IL EA +L +K GL+ DV
Sbjct: 21 CKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDV 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y+ ++ GFC G + L +E +E+G++PNVV LI+ LH
Sbjct: 81 VVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHT 140
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P T+ +I LC G+ KAL L LM E G+ PS Y+ LI L
Sbjct: 141 MTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGL 195
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 31/157 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKP 49
C + +A K+ + M + G V +Y L EA ++ ++ DG ++P
Sbjct: 196 CKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEP 255
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV T+ V+ G CK GR ++ +E+ + IERG N+ T HI
Sbjct: 256 DVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTC----------HI-------- 297
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G IDKA+ L +++ G +PS T Y +I
Sbjct: 298 LIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMI 334
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +AR++ M ++ P+ ++ I+ A E+L +++ GL PD
Sbjct: 373 CKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDA 432
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
YTY++ ++ K+G+ E + I G+TP+
Sbjct: 433 YTYSSFINRLSKLGQMEEAKGAFDSMIASGITPD 466
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ D M + G N+ T IL +A E+ V GL P
Sbjct: 268 CKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSS 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY+ ++DGFCK+ N L + G++P + TL+
Sbjct: 328 TTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQE 387
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + P TI+FN +I G I A LL M + G P Y + I +L +
Sbjct: 388 MKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSK 444
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A+ + M +G P + Y L +A + +K +PD
Sbjct: 337 FCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPD 396
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++ ++DG K G + ELLN+ + G+TP+ T+++
Sbjct: 397 TISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAY------------------TYSSF 438
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I L +G++++A M G P +YD+LIK
Sbjct: 439 INRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIK 475
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID---- 97
+K + PD+ +Y +++G CK R + ++LL E PN T L + +
Sbjct: 1 MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60
Query: 98 -------IGHIPR------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
+G + R + ++ +I C G +D+ L M E G P+ +Y
Sbjct: 61 VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120
Query: 145 LI 146
LI
Sbjct: 121 LI 122
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +V++ M NG P+ TY + EA L +++DG++P+V TY+++M
Sbjct: 227 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLM 286
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHN--------------VIDIGHI 101
+ CK GRS E ++ + +RG+ P++ T L+ H ++ IG
Sbjct: 287 NYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVK 346
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+N +I C GK+D+A LL M G P Y TLI
Sbjct: 347 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 391
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA + M +G PNV TY+ L EA ++ ++ GL+PD
Sbjct: 254 YCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 313
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+ TY ++ G CK GR E +L + + GV P+++T LI L
Sbjct: 314 IATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLA 373
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ +G P +T+ +I C V ++D AL L M G P+ Y+ +++ L
Sbjct: 374 SMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 429
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 36/158 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G P++ TY L EA ++L ++ + G+KPD
Sbjct: 324 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 383
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG--HIPRTI--- 105
+ TY +++G+C+V R ++ + L E + GV+PN++T +N+I G H RT
Sbjct: 384 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT----YNIILQGLFHTRRTAAAK 439
Query: 106 ----------------TFNNVIQALCGVGKIDKALLLL 127
T+N ++ LC D+AL +
Sbjct: 440 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 477
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
D V++ F G +T + +A E+L + +G+ PD TY +++ G+C G+
Sbjct: 200 DVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 259
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNN 109
E + L + GV PNVVT L N + G P T+
Sbjct: 260 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 319
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++Q C G++ ++ L LM G P Y+TLI
Sbjct: 320 LLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 356
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P V TY IL + L NV G + D T+T ++ G C R+++ M++
Sbjct: 90 PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + ++G IP ++NN+++ LC + +AL LL +M +
Sbjct: 150 V-----------------LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192
Query: 134 ---GKIPSRTLYDTLI 146
G P Y+T++
Sbjct: 193 RGGGSPPDVVSYNTVL 208
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG--------RSNEVMELLNEAIERGVTP 84
LE M+ + + G PDV +Y V++GF K G ++ ME+LN ++ GV P
Sbjct: 183 LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMP 242
Query: 85 NVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ +T ++H L + G P +T+++++ LC G+ +A +
Sbjct: 243 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIF 302
Query: 128 FLMYEHGKIPSRTLYDTLIK 147
M + G P Y TL++
Sbjct: 303 DSMTKRGLEPDIATYRTLLQ 322
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 28/132 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER---GVTPNVV---TLIH-------- 91
G PDV++Y ++ G C RS E +ELL+ + G P+VV T+++
Sbjct: 158 GCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQ 217
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L+ ++ G +P +T+N+++ C G+ +A+ L M G P
Sbjct: 218 TKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP 277
Query: 138 SRTLYDTLIKKL 149
+ Y +L+ L
Sbjct: 278 NVVTYSSLMNYL 289
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CNK D AR+ D M G + TYT L EA ++L + L D
Sbjct: 374 FCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVD 433
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYT ++DG+CK G+ E ++ N ++RGV PNVVT LH
Sbjct: 434 EVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLH 493
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G T+N++I LC G +D+A+ + M G P Y TLI L
Sbjct: 494 EMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDAL 549
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M + G N TY L +A + ++ GLKPDV
Sbjct: 480 CKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDV 539
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++D CK G + +LL E ++ G+ P +V T+N ++
Sbjct: 540 YTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIV------------------TYNVLM 581
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
C G+++ LL M E P+ T Y++L+K+
Sbjct: 582 NGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQ 618
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M G P+V TYT L A+++L + ++G+KP +
Sbjct: 515 CKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTI 574
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH----------- 100
TY +M+GFC GR +LL +E+ + PN T L IG+
Sbjct: 575 VTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKG 634
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+N +I+ C + +A M E G + + Y LI+ L+++
Sbjct: 635 MCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKK 692
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDV TY ++ G+C +G ++LL++ + RGV PN +
Sbjct: 292 PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNAT------------------VYT 333
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+V+ LC G++ AL ++ M H I +Y T++
Sbjct: 334 SVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVL 371
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKPD 50
+C +K++++M + HPN TTY ++++ Y + N+K+ ++P+
Sbjct: 584 FCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPN 643
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
TY ++ G CK E NE IE+G
Sbjct: 644 ENTYNILIKGHCKARSMKEAQYFHNEMIEKG 674
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A +I M G+ P+ +TY+ + A+ + +K++ + P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DV+TYT ++D FCKVG + + +E + G PNVVT LIH
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ G IP +T+ +I C G+I+KA + M + IP +Y
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY L EA ++L + +G +P+ Y A++DGFCKVG+ +E +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 74 LNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
+ ERG PNV T L L +++ P I + +I LC
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK D+A L+ +M E G P+ Y +I
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 50/195 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
+C +ARK D M +G PNV TYT L E +EM+++ +G
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLS---EGC 581
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNE--------------AIERG--VTPNVVT--- 88
P+V TYTA++DG CK G+ + ++ I+ G PN+ T
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641
Query: 89 ----LIHLHNV------IDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H V +D+ G P I ++ +I C VGK+D+A ++ M E G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y +LI +L
Sbjct: 702 YGPNVYTYSSLIDRL 716
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY ++ ++ G P+V TYTA++D
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GF K G+ ++ +EL+ + +G PN VT
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 34/175 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D EA +++ M + G HPNV TYT + + E++ + G P
Sbjct: 752 CKVGKTD--EAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAP 809
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE---------------AIERGVTPNVVTLIHLHN 94
+ TY +++ C G ++ +LL+E IE +++L L
Sbjct: 810 NFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDE 869
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + +P + +I + C G+++ AL L H ++ S T Y K L
Sbjct: 870 IAENVAVPIIPAYRILIDSFCKAGRLELALEL------HKEMSSCTSYSAADKDL 918
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 35/181 (19%)
Query: 1 CYC-NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C C K ++++ M G +P+ + L AY++L + + G +
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401
Query: 49 PDVYTYTAVMDGFCKVGR--SNEVMELLNEA----IERGVTPNVVTLIHL---------- 92
P Y ++ G C + S +V+EL +A ++ V N V + +L
Sbjct: 402 PGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKF 461
Query: 93 -------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ G IP T T++ VI LC K+D A LL M + +P Y L
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521
Query: 146 I 146
I
Sbjct: 522 I 522
Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------- 89
E L ++ + K D YT ++ G C+ E M+ L+ PNVVT
Sbjct: 285 EALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGC 344
Query: 90 ----------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
L +I G P FN++I A C G A LL M + G P
Sbjct: 345 LRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGY 404
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 405 VVYNILI 411
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + EA+ V+ M + G P+V TY+ ++EA ++ + G KPDV
Sbjct: 319 CKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDV 378
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
++Y +++G+CKV R +E +L NE I +G+TPN V TLIH N
Sbjct: 379 FSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKN 438
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G++P T++ ++ C G KA L M P+ +Y+ LI +
Sbjct: 439 MHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAM 493
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V+ + G P + T+T L +A E+ ++ G +PDVYTYT +++
Sbjct: 152 AFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIIN 211
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN-------VIDI-------GHIP 102
G CK+G + LL + E G PNVV T+I H +DI G P
Sbjct: 212 GLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISP 271
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N++IQ LC + +A LL M +P ++ L+
Sbjct: 272 DIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLV 315
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + YM G P++ TY L EA +L +++ + PD+ T+ ++
Sbjct: 256 EALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLV 315
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
D CK G+ +E +L E GV P+VVT L +I G
Sbjct: 316 DTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCK 375
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P ++N +I C V +ID+A L M G P+ Y+TLI L Q
Sbjct: 376 PDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQ 425
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA+++ + M G PN +Y L EA + N+ +G P+
Sbjct: 388 YCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPN 447
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHNVIDI----- 98
++TY+ ++DGFCK G + L PN+V + N+ D
Sbjct: 448 LFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFS 507
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P + +I LC G +D+AL M E G P Y+ +I+
Sbjct: 508 ELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIR 561
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +ARK+ +F G PN YT + EA E N++ DG PD
Sbjct: 494 CKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 553
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+Y ++ GF + ++L+ E ++G +V T
Sbjct: 554 ISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
GL P++YT + +++ F + R + +L + I+ G+ P +VT L N
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQA 187
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P T+ +I LC +G+ A LL M E G P+ Y T+I
Sbjct: 188 MELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTII 245
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-RGVTPNVVTLI-------HLHNV----- 95
P + +T ++ K+G+ + + L + +E G++PN+ TL HL V
Sbjct: 95 PCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFS 154
Query: 96 -----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +G P +TF +I LC VGK +A+ L M G P Y T+I L
Sbjct: 155 VLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGL 213
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + F +A ++ M PN+ Y IL +A ++ + GL+P+
Sbjct: 458 FCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPN 517
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
YT +++G CK G +E +E E G P+ ++ +NVI G +
Sbjct: 518 AQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEIS----YNVIIRGFL 564
>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
Length = 506
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 36/180 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ V+D M PNV+T+ L E + + G+KP+
Sbjct: 288 FCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPN 347
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV--------------- 95
V TY ++MDG+C V + N+ ++ N +RGVT NV H +N+
Sbjct: 348 VVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANV----HSYNIMINGFCKIKKVDKAM 403
Query: 96 ---IDIGH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I++ H IP +T+N++I LC GKI A L+ M++ G+ P+ Y++++ L
Sbjct: 404 KLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNAL 463
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 16/138 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A+K+ + M G NV +Y I+ +A ++ + + + + PD
Sbjct: 358 YCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPD 417
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----DIGHIPRTI 105
V TY +++DG CK G+ + +L+NE +RG PN++T + N + D G P
Sbjct: 418 VVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMH 477
Query: 106 TFNNVIQALCGVGKIDKA 123
T +I+ LC GK++ A
Sbjct: 478 TDTILIKGLCQSGKLEAA 495
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TY+ L +A ++ + + +KPDVYT+ ++DGFCK GR + +
Sbjct: 241 PDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNV 300
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L+ + + + PNV TFN ++ C K+ + + +M +
Sbjct: 301 LDMMMIQDIKPNVS------------------TFNTLVDGFCKDRKMKEGKTVFAMMMKQ 342
Query: 134 GKIPSRTLYDTLI 146
G P+ Y +L+
Sbjct: 343 GIKPNVVTYCSLM 355
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A D + G+H + +Y L A ++L V ++ +
Sbjct: 148 FCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLN 207
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
Y V+DG K N+ +L +E + + ++P+VVT I L N
Sbjct: 208 AVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFN 267
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +I P TFN ++ C G++ KA +L +M P+ + ++TL+
Sbjct: 268 KMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLV 320
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
FE K++ + + ++ V + + +E G+ P+ T+ +++ FC++G
Sbjct: 69 FEFNKILGSLVKSKHYHTVLSLSQQMEFE--------GINPNFVTFNILINCFCQLGLIP 120
Query: 69 EVMELLNEAIERGVTPNVVTL----------------IHLHN-VIDIGHIPRTITFNNVI 111
+L + ++ G P+++TL ++ H+ ++ +G +++ +I
Sbjct: 121 FAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLI 180
Query: 112 QALCGVGKIDKALLLL 127
LC VG+ AL LL
Sbjct: 181 NGLCKVGETRAALQLL 196
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A+KV + M G PNV TY L EA + + GLKP+
Sbjct: 309 FCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY A+++GFCK E E+L++ +RG+ PNV ITFN +
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV------------------ITFNTL 410
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I A G++D A LL +M + G P+ + Y+ LI
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 28/156 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G PNV+TY L EA ++ ++ +GLK D+ TY ++D CK G
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGE 489
Query: 67 SNEVMELLNEAIERGVTP----------------NVVTLIHLHNVID-IGHIPRTITFNN 109
+ + + LL+E E G+ P N +++ +++ G +T+N
Sbjct: 490 TRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNV 549
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+I+ C GK+++A LL M E G IP+RT YD L
Sbjct: 550 LIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA + D M G PNV TY L EA EML ++ GL P+V
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV 404
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHIPRT 104
T+ ++D + K GR ++ L + ++ GV PNV T NV + + +
Sbjct: 405 ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKE 464
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+N ++ ALC G+ KA+ LL M+E G PS Y+ LI
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALI 516
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A +++ ++K G P V TY ++DG+CK G+ + LL E + + + PN +T L
Sbjct: 247 KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306
Query: 93 ------HNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
NV G P +T+N++I LC GK+D+AL L M G
Sbjct: 307 DGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK 366
Query: 137 PSRTLYDTLI 146
P+ Y+ LI
Sbjct: 367 PNVVTYNALI 376
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 18/97 (18%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V T+ V++G CKVG+ + +++ + G +P+V IT+N
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSV------------------ITYNT 269
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I C GK+ KA LL M P+ ++ LI
Sbjct: 270 IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M ++G P V TYT+L EA + ++ G +P+V
Sbjct: 266 CEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDIGHI 101
YTYT ++D CK GR +E +++LNE +E+GV P+VV L + + + +
Sbjct: 326 YTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGL 385
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N +I C +D+A+ LL M E P Y+TLI L
Sbjct: 386 MESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGL 440
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA K+++ M + G P+V + L +A +L +++ + P+V
Sbjct: 336 CKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNV 395
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ GFC+ + M LLN+ +E ++P+VV T+N +I
Sbjct: 396 RTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVV------------------TYNTLI 437
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC VG +D A L LM G P + ++ +
Sbjct: 438 HGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFM 472
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 57/197 (28%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
DF A ++++ + +GY PNV TYT EA EM++ +KN+G+ D + Y
Sbjct: 585 DFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYN 644
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--LIHLHNVID---------------- 97
+++ + +G + +L G P+ +T ++ H VI+
Sbjct: 645 LLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSL 704
Query: 98 ----------------------------IGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
G +P T++ +I LC VG+++ A L
Sbjct: 705 TNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHH 764
Query: 130 MYEHGKIPSRTLYDTLI 146
M E G PS ++++L+
Sbjct: 765 MREGGISPSEIIHNSLL 781
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M +G+ P+ T+ EA+++L ++K +K + + YTA++D
Sbjct: 449 ASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALID 508
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G+CK G+ L + PN +ITFN +I L GK
Sbjct: 509 GYCKAGKIEHAASLFKRMLAEECLPN------------------SITFNVMIDGLRKEGK 550
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A+LL+ M + P+ Y+ L++++
Sbjct: 551 VQDAMLLVEDMAKFDVKPTLHTYNILVEEV 580
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A V+ M PNV TY L A +L + L PD
Sbjct: 370 YCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVIDIGHIPR 103
V TY ++ G C+VG + L I G +P+ +V L + V + I
Sbjct: 430 VVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILE 489
Query: 104 TI----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ + +I C GKI+ A L M +P+ ++ +I L ++
Sbjct: 490 SLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKE 548
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 29/136 (21%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P + TY IL A E+L + + G +P+V TYTA + +C GR E E+
Sbjct: 568 PTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEM 627
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ + GV ++D + +N +I A +G +D A +L M+
Sbjct: 628 VIKIKNEGV------------LLD------SFIYNLLINAYGCMGLLDSAFGVLRRMFGT 669
Query: 134 GKIPSRTLYDTLIKKL 149
G PS Y L+K L
Sbjct: 670 GCEPSYLTYSILMKHL 685
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 37/142 (26%)
Query: 21 NGYHPN-VTTYTILEAYEMLMNVKNDGL----------KPDVYTYTAVMDGFCKVGRSNE 69
N PN +T T+L +Y L N+ L PD++TYT+++ G+C+
Sbjct: 183 NSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCR------ 236
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR--TITFNNVIQALCGVGKIDKALLLL 127
N+ +ER V +PR +++ N+I LC GK+ +AL
Sbjct: 237 -----NDDVERACGVFCV-------------MPRRNAVSYTNLIHGLCEAGKLHEALEFW 278
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
M E G P+ Y L+ L
Sbjct: 279 ARMREDGCFPTVRTYTVLVCAL 300
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 28/158 (17%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D+ PNV TY++L +A E+L ++K G PDV TYT ++DG CK +
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVA 243
Query: 69 EVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVI 111
E+L E ++ G PN+VT L+H + ++ G P +T+ +I
Sbjct: 244 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 303
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC VG++ A +L M + G P +Y+ LI L
Sbjct: 304 DGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 341
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A ++++ M G P+V TYTIL A+E+L + + G P++
Sbjct: 202 CKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY +++ G C+ R ++ + L+ + RG TPNVV TLI L +
Sbjct: 262 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 321
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ID G P + +N +I LC ++D+++ LL G P Y ++I L
Sbjct: 322 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL 376
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 28/160 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G P++ Y +L E+ +L + G+KPDV TY++V+ G C+ R
Sbjct: 322 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 381
Query: 67 SNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-------GHIPRTITFNN 109
+E LL RG P+V+ TLI + D+ G +T++
Sbjct: 382 LDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYST 441
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC G++D+A LLL M G PS Y++LIK L
Sbjct: 442 LIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 481
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EA +++ Y+ G P+V Y+ L EA+++ + DG DV
Sbjct: 377 CRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADV 436
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ ++DG CK GR +E LL + G TP P T+T+N++I
Sbjct: 437 VTYSTLIDGLCKAGRVDEAHLLLARMVRMG-TP-----------------PSTMTYNSLI 478
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ LC + +D+A+ L+ M PS Y+ LI
Sbjct: 479 KGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILI 513
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 70/210 (33%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY---- 54
+A ++ M D+G PNV TY L A E+ ++K+ P + TY
Sbjct: 97 QALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLL 156
Query: 55 --------------------------------------TAVMDGFCKVGRSNEVMELLNE 76
+ ++DG CK R ++ +ELL
Sbjct: 157 DGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLES 216
Query: 77 AIERGVTPNVVTLI-----------------HLHNVIDIGHIPRTITFNNVIQALCGVGK 119
RG +P+V+T L ++D G +P +T+N+++ LC +
Sbjct: 217 MKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARR 276
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ AL L+ M G P+ Y TLI L
Sbjct: 277 VSDALALMRDMTCRGCTPNVVTYGTLIDGL 306
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI-- 98
+PDVYTY A++ GFC+ G ++ +E + + PNV L ID
Sbjct: 6 QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65
Query: 99 --------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + T+ + ++ L ++D+AL +L M +HG P+ Y++LI L
Sbjct: 66 CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A++ D M PNV +IL +A ++ G+ D
Sbjct: 19 FCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVAD 78
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTA++ G K R ++ + +L+E + G PNVV T+N++
Sbjct: 79 TVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVV------------------TYNSL 120
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC + D+A L M PS Y+TL+ L
Sbjct: 121 IDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGL 159
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKN-----DG 46
C+ N EA ++++ M + P+ TY IL A +L K G
Sbjct: 482 CDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGG 541
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
D Y++++DG CK GR E ++ E I+ GV P+ +T
Sbjct: 542 TALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHIT 583
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + D M D G+ PNV TY L A +L +++ +PDV
Sbjct: 146 CVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDV 205
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI------ 101
YT+++D CK + E L ++ + +G++P++ T L+H L N+ + H+
Sbjct: 206 VIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQ 265
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + F+ V+ ALC GK+ +A ++ +M + G P Y TL+
Sbjct: 266 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLM 317
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN ++ +++ M ++ P+V ++ + EA+E++ + G++PDV
Sbjct: 251 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDV 310
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----LHNVIDIGH---- 100
TYT +MDG C +E +++ + + +G P+V+ TLI+ +H + +
Sbjct: 311 VTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEE 370
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IP T T+N ++ LC VG++ A+ L M G++P Y L+ L
Sbjct: 371 MCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSL 425
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +++ EA KV D M G+ P+V +YT L +A + + PD
Sbjct: 320 HCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPD 379
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY +M G C VGR + + L +E + RG P++VT I L ++ H+
Sbjct: 380 TKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLK 439
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +N +I +C G+++ A L + G PS Y+ +I L
Sbjct: 440 AIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 495
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV T IL A+ +L + G +PD T+T ++ G C G+ E
Sbjct: 95 GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEA 154
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+ L ++ I+ G PNVV T+ +I LC VG A+ LL M
Sbjct: 155 LHLFDKMIDEGFQPNVV------------------TYGTLINGLCKVGNTSAAIRLLRSM 196
Query: 131 YEHGKIPSRTLYDTLIKKL--DQQ 152
+ P +Y ++I L D+Q
Sbjct: 197 EQGNCQPDVVIYTSIIDSLCKDRQ 220
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M G P++ TY+IL EA +L ++ L PD+
Sbjct: 391 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDI 450
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++DG C+ G +L + +G+ P+V T+N +I
Sbjct: 451 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSV------------------WTYNIMI 492
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G +++A L M + P Y+T+ + Q
Sbjct: 493 HGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQ 532
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + G HP+V TY I+ EA ++ M + + PD
Sbjct: 461 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDG 520
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
TY + GF + + ++LL E + RG + + L+
Sbjct: 521 CTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCFLM 559
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N +A ++D M + GY P++ Y + +A++ ++ G++P+
Sbjct: 268 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 327
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TYTA+++G C R ++ LL++ I++ +TPNV+T L
Sbjct: 328 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 387
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ + P +T++++I LC +ID+A + LM G + Y+TLI
Sbjct: 388 EMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLI 440
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++D MF GY PN T+ L EA ++ + G +PD
Sbjct: 775 YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD 834
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY V++G CK G ++ LLN+ + + P V+ T+I H+ + +++
Sbjct: 835 LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 894
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T++++I LC G+ A LL M E P + LI
Sbjct: 895 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 947
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G PNV TY+ L +A +L ++ + PDV
Sbjct: 881 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 940
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVIDIGH----- 100
+T++A++D F K G+ E +L +E ++R + P++VT LI+ +H+ +D
Sbjct: 941 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 1000
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N +I+ C ++++ + + M + G + + Y+ LI+ L Q
Sbjct: 1001 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 1057
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA +M + + PD
Sbjct: 950 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 1009
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++ GFCK R E ME+ E +RG+ N T+T+N +
Sbjct: 1010 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN------------------TVTYNIL 1051
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IQ L G D A + M G P+ Y+TL+ L
Sbjct: 1052 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 1090
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTY 54
N EA +ID M G P++ TY ++ A+ +L ++ L+P V Y
Sbjct: 814 NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 873
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
++DG CK ++ + L E +G+ PNVVT LI L ++I+
Sbjct: 874 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 933
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TF+ +I A GK+ +A L M + PS Y +LI
Sbjct: 934 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 982
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + + +A +++ M PNV TY+ +LEA E+ + + PD+
Sbjct: 339 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 398
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+++++G C R +E ++ + + +G +VV ++N +I
Sbjct: 399 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV------------------SYNTLI 440
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C +++ + L M + G + + Y+TLI+ Q
Sbjct: 441 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 480
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C+C ++ A V+ M GY PN+ T + I EA ++ + G +P
Sbjct: 739 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 798
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLH 93
+ T+ ++ G +++E M L++ + +G P++VT +L
Sbjct: 799 NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 858
Query: 94 NVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ G + P + +N +I LC +D AL L M G P+ Y +LI L
Sbjct: 859 NKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 915
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C E +V M G N TY IL A E+ + +DG+ P+
Sbjct: 1020 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 1079
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
+ TY ++DG CK G+ + M + + P + T I + + G +
Sbjct: 1080 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 1139
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P + +N +I C G ++A L M E G +P+ Y+TLI+
Sbjct: 1140 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 1193
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------- 94
++N G+ + YTY+ +++ FC+ + + +L + ++ G PN+VTL L N
Sbjct: 721 MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 780
Query: 95 ------VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
++D G+ P T+TFN +I L K +A+ L+ M G P Y
Sbjct: 781 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 840
Query: 145 LIKKL 149
++ L
Sbjct: 841 VVNGL 845
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G++ D+YT+ V++ FC + + + +L + ++ G P+ VT+ L N
Sbjct: 218 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 277
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+++IG+ P + +N +I +LC +++ A + G P+ Y L+
Sbjct: 278 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 337
Query: 149 L 149
L
Sbjct: 338 L 338
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A + + M ++ TYT + EA+ + ++ GLKPD+
Sbjct: 514 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDI 573
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TYT +M G C G +EV L + + G+ N TL
Sbjct: 574 VTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 611
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + K+ M G N TY L +A E + G+ PD
Sbjct: 443 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 502
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++TY ++ G C G + + + + +R + ++V T+ V
Sbjct: 503 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV------------------TYTTV 544
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ +C GK+++A L + G P Y T++ L
Sbjct: 545 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 583
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F A ++ M + P+ TY L A ++ + G PDV
Sbjct: 56 CKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDV 115
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY+ + DG CK GR +E EL+ E G TPN+V TLI L
Sbjct: 116 VTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLET 175
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P +T+ ++ LC G++DKAL ++ M + G PS Y L++ L
Sbjct: 176 LVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 230
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 18/106 (16%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
+ PDV+TY ++DG CK ++++ E+L+E ++RGVTP+ T+T
Sbjct: 6 VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPD------------------TVT 47
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
FN+++ LC GK ++A LL +M E PS Y+TLI L +Q
Sbjct: 48 FNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQ 93
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 29/132 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +++ M NG PN+ TY L +AYE+L + + G PDV
Sbjct: 126 CKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDV 185
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DG CK GR ++ ++++ ++RG TP+V IT+ ++
Sbjct: 186 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSV------------------ITYTALM 227
Query: 112 QALCGVGKIDKA 123
+ LC G++D+A
Sbjct: 228 EGLCRTGRVDEA 239
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + P+V TY IL +A EML + + G+ PD T+ ++MDG CK G+
Sbjct: 1 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60
Query: 67 SNEVMELLNEAIERGVTPNVVT-------LIHLHNV----------IDIGHIPRTITFNN 109
LL ER P+ T L NV + G +P +T++
Sbjct: 61 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC G+ID+A L+ M +G P+ Y+TLI L
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGL 160
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + E V + M G PN+ TY I+ EA+ L ++ + G PD
Sbjct: 297 YCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 356
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V +Y ++DG K + E ++L++ I+ G+ P+ VT + L
Sbjct: 357 VVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILK 416
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIKKLDQQ 152
N+I G P +T+N +I L ++ A L+ M +G + S T Y+T+I +L ++
Sbjct: 417 NMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKE 476
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 60/207 (28%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++++ + +G+ P+V TYTI+ +A +M+ + G P V
Sbjct: 161 CKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSV 220
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TYTA+M+G C+ GR +E + E + + T + + + L N
Sbjct: 221 ITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDG 280
Query: 95 -----VIDI---------------------------GHIPRTITFNNVIQALCGVGKIDK 122
ID+ G +P T+N V+ LC GK+D+
Sbjct: 281 IRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE 340
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKL 149
A L M+ G +P Y+ +I L
Sbjct: 341 AFPFLESMHSAGCVPDVVSYNIIIDGL 367
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M G P+V +Y I+ EA ++L + G+ PD
Sbjct: 333 CKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDA 392
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI-------HLHNVIDIGH- 100
TY +M FCK R ++ + +L I+ GV P+ VT LI L + ++ H
Sbjct: 393 VTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHE 452
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ T+N +I LC G + +ALLL+ M HG + Y+ I +L ++
Sbjct: 453 MLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKE 511
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 36/181 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++D+M +G N TY I EA +L + D L+ +V
Sbjct: 474 CKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM--DTLRDEV 531
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE-RGVT-------------------PNVVTLIH 91
+YT V+ G CK + + +L E + +G+ +TL+
Sbjct: 532 -SYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLE 590
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
L ++ G P IT+N VI LC + K+DKA L M G + S Y LI L
Sbjct: 591 L--MVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCG 648
Query: 152 Q 152
Q
Sbjct: 649 Q 649
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M G P+V TY ++ +A+E+ + G+ +YT ++
Sbjct: 584 EALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLI 643
Query: 59 DGFCKVGRSNEVMELLNE 76
G C GR E +++L E
Sbjct: 644 YGLCGQGRGKEALQVLEE 661
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A +I M G+ P+ +TY+ + A+ + +K++ + P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DV+TYT ++D FCKVG + + +E + G PNVVT LIH
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ G IP +T+ +I C G+I+KA + M + IP +Y
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY L EA ++L + +G +P+ Y A++DGFCKVG+ +E +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 74 LNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
+ ERG PNV T L L +++ P I + +I LC
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK D+A L+ +M E G P+ Y +I
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 50/195 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
+C +ARK D M +G PNV TYT L E +EM+++ +G
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLS---EGC 581
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNE--------------AIERG--VTPNVVT--- 88
P+V TYTA++DG CK G+ + ++ I+ G PN+ T
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641
Query: 89 ----LIHLHNV------IDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H V +D+ G P I ++ +I C VGK+D+A ++ M E G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y +LI +L
Sbjct: 702 YGPNVYTYSSLIDRL 716
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY ++ ++ G P+V TYTA++D
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GF K G+ ++ +EL+ + +G PN VT
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D EA +++ M + G HPNV TYT + + E++ + G P
Sbjct: 752 CKVGKTD--EAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAP 809
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE---------------AIERGVTPNVVTLIHLHN 94
+ TY +++ C G ++ +LL+E IE +++L L
Sbjct: 810 NFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDE 869
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS--RTLYDTLIKKL 149
+ + +P + +I + C G+++ AL L M + + LY +LI+ L
Sbjct: 870 IAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESL 926
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 35/181 (19%)
Query: 1 CYC-NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C C K ++++ M G +P+ + L AY++L + + G +
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401
Query: 49 PDVYTYTAVMDGFCKVGR--SNEVMELLNEA----IERGVTPNVVTLIHL---------- 92
P Y ++ G C + S +V+EL +A ++ V N V + +L
Sbjct: 402 PGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKF 461
Query: 93 -------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ G IP T T++ VI LC K+D A LL M + +P Y L
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521
Query: 146 I 146
I
Sbjct: 522 I 522
Score = 42.4 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------- 89
E L ++ + K D YT ++ G C+ E M+ L+ PNVVT
Sbjct: 285 EALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGC 344
Query: 90 ----------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
L +I G P FN++I A C G A LL M + G P
Sbjct: 345 LRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGY 404
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 405 VVYNILI 411
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N +A ++D M + GY P++ Y + +A++ ++ G++P+
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TYTA+++G C R ++ LL++ I++ +TPNV+T L
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ + P +T++++I LC +ID+A + LM G + Y+TLI
Sbjct: 285 EMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLI 337
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + + +A +++ M PNV TY+ +LEA E+ + + PD+
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+++++G C R +E ++ + + +G +VV ++N +I
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV------------------SYNTLI 337
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C +++ + L M + G + + Y+TLI+ Q
Sbjct: 338 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G++ D+YT+ V++ FC + + + +L + ++ G P+ VT+ L N
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+++IG+ P + +N +I +LC +++ A + G P+ Y L+
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234
Query: 149 L 149
L
Sbjct: 235 L 235
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A + + M ++ TYT + EA+ + ++ GLKPD+
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDI 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TYT +M G C G +EV L + + G+ N TL
Sbjct: 471 VTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 508
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + K+ M G N TY L +A E + G+ PD
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++TY ++ G C G + + + + +R + ++V T+ V
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV------------------TYTTV 441
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ +C GK+++A L + G P Y T++ L
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ A KV+D + + P V TYTIL EA ++L + + GLKPD+
Sbjct: 200 CSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDM 259
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
+TY ++ G CK G + E++ +G P+V++ I L +++ G
Sbjct: 260 FTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK 319
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I LC GKI++A+ LL LM E G P YD LI
Sbjct: 320 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 371
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ + E K++ MF PNV TY+IL EA +L +K GL PD Y
Sbjct: 306 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 365
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
+Y ++ FC+ GR + +E L I G P++V +N V+
Sbjct: 366 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIV------------------NYNTVLA 407
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK D+AL + + E G P+ + Y+T+ L
Sbjct: 408 TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 444
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKNDGL---------KPDVY 52
C ++ E+ +++ M GY+P+V T +++ + L NV +PDV+
Sbjct: 96 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVF 155
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI---------- 101
Y A+++GFCK+ R ++ +L+ + +P+ VT I + ++ G +
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215
Query: 102 ------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P IT+ +I+A G +D+AL LL M G P Y+T+I+ + ++
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKE 272
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N +A +V+D M + P+ TY I+ A ++L + +D +P
Sbjct: 164 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPT 223
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT +++ G +E ++LL+E + RG+ P++ T+N +
Sbjct: 224 VITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDM------------------FTYNTI 265
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ +C G +D+A ++ + G P Y+ L++ L Q
Sbjct: 266 IRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQ 307
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
+ D A +I M NG P+ TY + +A+E+L+++++ P V
Sbjct: 446 SSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVV 505
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY V+ GFCK R + +++L+ + G PN T
Sbjct: 506 TYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETT 541
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + +A +++ M +HP+V TY I+ +A ++L ++ +G +P
Sbjct: 478 CLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRP 537
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79
+ TYT +++G G E MEL N+ +
Sbjct: 538 NETTYTVLIEGIGFAGYRAEAMELANDLVR 567
>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C N +A V M D G PN+ T+ L +A E+L + GLKP
Sbjct: 308 CFCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLISGHCKDGEVHKARELLQMLLELGLKP 367
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI--- 105
D++T+++++D C+ + ++ + +E +E G++PN VT I + ++ IG + R++
Sbjct: 368 DIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLL 427
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+FN +IQ+ C +GK++KA + M G IP+ Y L+K L
Sbjct: 428 KDMRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSMSTLGLIPNNYTYGALVKAL 484
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C F +A M + G PN TY IL + ++L +++ DG+ P
Sbjct: 378 CLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLLKDMRKDGISP 437
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++++ A++ FC++G+ + ++ V++ L G IP T+
Sbjct: 438 DIFSFNALIQSFCRMGKVEKAEKMF------------VSMSTL------GLIPNNYTYGA 479
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++AL +G+ D+A + F M +G +P + + + L +Q
Sbjct: 480 LVKALFELGRCDEAKKMFFSMEVNGCVPDSFTCNLISENLFKQ 522
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 25/138 (18%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+E L + D L DV++Y ++D FCK N+ + + +RGV+PN+VT
Sbjct: 281 MEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTF--- 337
Query: 93 HNVIDIGHI---------------------PRTITFNNVIQALCGVGKIDKALLLLFLMY 131
N + GH P TF+++I LC + D AL M
Sbjct: 338 -NTLISGHCKDGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMV 396
Query: 132 EHGKIPSRTLYDTLIKKL 149
E G P+ Y+ LI+ L
Sbjct: 397 EWGISPNAVTYNILIRSL 414
Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
AY + D KPD +TY ++ G CK+G +E + L+ + G + NV
Sbjct: 73 AYLKFQQMSADNCKPDRFTYNMLIHGVCKIGVVDEALRLVKQMEGFGYSANVY------- 125
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ N+I C ++D+A F ++E K+ + + I+ L
Sbjct: 126 -----------TYTNLIYGFCNAKRVDEA----FRVFETMKLRNVNPNEATIRSL 165
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA ++ ++ G +VYTYT ++ GFC R +E + R V PN T+
Sbjct: 107 EALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEAFRVFETMKLRNVNPNEATI 162
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N EA ++ D M G P++ TY+IL + + + + GL P+
Sbjct: 389 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 448
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TY ++ GFC+ G+ N EL E + RGV P+VVT I L + D G + + +
Sbjct: 449 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE 508
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C K+D A L + + G P Y+ +I L
Sbjct: 509 KMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 564
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + + K++ M P+V T++ +LEA E+ + G+ PD
Sbjct: 320 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 379
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TY +++DGFCK +E ++ + + +G P++VT L N
Sbjct: 380 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 439
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G IP TIT+N ++ C GK++ A L M G PS Y L+ L
Sbjct: 440 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 494
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A + ++ G+K DV TY++++ G C G+ ++ ++L E I R + P+VVT L
Sbjct: 292 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 351
Query: 94 NV-----------------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+V I G P TIT+N++I C + +A + LM G
Sbjct: 352 DVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCE 411
Query: 137 PSRTLYDTLI 146
P Y LI
Sbjct: 412 PDIVTYSILI 421
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC K A V+ + GY P+ T++ L EA ++ + +P
Sbjct: 143 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 202
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D+ T + +++G C GR +E + L++ +E G P+ VT + L
Sbjct: 203 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 262
Query: 94 NVIDIGHIPRTIT-FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +I ++ ++ VI +LC G D AL L M G Y +LI L
Sbjct: 263 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 319
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILE----------AYEMLMNVKNDGLKPDV 51
C K EA +ID M + G+ P+ TY +L A ++ ++ +K V
Sbjct: 215 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 274
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
Y+ V+D CK G ++ + L NE +G+ +VVT L
Sbjct: 275 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLRE 334
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I IP +TF+ +I GK+ +A L M G P Y++LI
Sbjct: 335 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 386
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + +A+ + ++ + G+KPDV TY ++ G CK G +E L + E G T
Sbjct: 527 HGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCT 586
Query: 84 PNVVT---LIHLH 93
P+ T LI H
Sbjct: 587 PDDFTYNILIRAH 599
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 29/143 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G+ + Y IL EAYE+L +K G++PDV TY ++ G CK G
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
V ELL + I+ G P+V ITF ++ C VGKID+AL +
Sbjct: 439 FAAVDELLGKMIDDGCQPSV------------------ITFGTLVHGYCKVGKIDEALRI 480
Query: 127 LFLMYEHGKIPSRTLYDTLIKKL 149
L M E G P+ +Y+TLI L
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFL 503
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA +++ M + G P+V TY L E+L + +DG +P
Sbjct: 398 FCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPS 457
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ ++ G+CKVG+ +E + +L E G+ PN NVI +N +
Sbjct: 458 VITFGTLVHGYCKVGKIDEALRILRSMDESGIHPN--------NVI----------YNTL 499
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G +D A+ L M E + T ++ L+K L
Sbjct: 500 IDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 34/158 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G PN TY L AYE++ ++N+G+ ++ T ++ G C+ GR+
Sbjct: 240 HGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGA 299
Query: 70 VMELLNEAIERGVTP----NVVT-------LIHLHNV----------IDIGHIPRTITFN 108
+E E +R V P N VT L+H +NV + GH P I +
Sbjct: 300 ALEFFRE--KRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYF 357
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I L G+++ A + M E G Y+ LI
Sbjct: 358 TMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILI 395
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 25 PNVTTYTIL-----------EAYEML--MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
P+V TY IL +A +L M+ ++ ++PDV T V+DG CK GR E +
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229
Query: 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ + + +H G P T+T+N +I A C VG I A L+ M
Sbjct: 230 AFVEQRMSS---------VH-------GCPPNTVTYNCLIDAFCRVGNISMAYELVEKME 273
Query: 132 EHG 134
G
Sbjct: 274 NEG 276
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR-- 103
G P+ TY ++D FC+VG + EL+ + GV N+VTL N I +G + R
Sbjct: 241 GCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTL----NTI-VGGLCRAG 295
Query: 104 ----------------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+T++ ++ AL + A+ L G P +
Sbjct: 296 RTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIM 355
Query: 142 YDTLIKKLDQ 151
Y T+I L Q
Sbjct: 356 YFTMISGLTQ 365
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA +++ M ++G HPN Y L A E+ +K + +
Sbjct: 468 YCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPAN 527
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
V T+ A++ G + EL+++ E P+ VT+
Sbjct: 528 VTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTV 566
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 29/143 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G+ + Y IL EAYE+L +K G++PDV TY ++ G CK G
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
V ELL + I+ G P+V ITF ++ C VGKID+AL +
Sbjct: 439 FAAVDELLGKMIDDGCQPSV------------------ITFGTLVHGYCKVGKIDEALRI 480
Query: 127 LFLMYEHGKIPSRTLYDTLIKKL 149
L M E G P+ +Y+TLI L
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFL 503
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA +++ M + G P+V TY L E+L + +DG +P
Sbjct: 398 FCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPS 457
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ ++ G+CKVG+ +E + +L E G+ PN NVI +N +
Sbjct: 458 VITFGTLVHGYCKVGKIDEALRILRSMDESGIHPN--------NVI----------YNTL 499
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G +D A+ L M E + T ++ L+K L
Sbjct: 500 IDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 34/158 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G PN TY L AYE++ ++N+G+ ++ T ++ G C+ GR+
Sbjct: 240 HGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGA 299
Query: 70 VMELLNEAIERGVTP----NVVT-------LIHLHNV----------IDIGHIPRTITFN 108
+E E +R V P N VT L+H +NV + GH P I +
Sbjct: 300 ALEFFRE--KRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYF 357
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I L G+++ A + M E G Y+ LI
Sbjct: 358 TMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILI 395
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 25 PNVTTYTIL-----------EAYEML--MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
P+V TY IL +A +L M+ ++ ++PDV T V+DG CK GR E +
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229
Query: 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ + + +H G P T+T+N +I A C VG I A L+ M
Sbjct: 230 AFVEQRMSS---------VH-------GCPPNTVTYNCLIDAFCRVGNISMAYELVEKME 273
Query: 132 EHG 134
G
Sbjct: 274 NEG 276
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR-- 103
G P+ TY ++D FC+VG + EL+ + GV N+VTL N I +G + R
Sbjct: 241 GCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTL----NTI-VGGLCRAG 295
Query: 104 ----------------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+T++ ++ AL + A+ L G P +
Sbjct: 296 RTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIM 355
Query: 142 YDTLIKKLDQ 151
Y T+I L Q
Sbjct: 356 YFTMISGLTQ 365
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA +++ M ++G HPN Y L A E+ +K + +
Sbjct: 468 YCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPAN 527
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
V T+ A++ G + EL+++ E P+ VT+
Sbjct: 528 VTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTV 566
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 29/143 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G+ + Y IL EAYE+L +K G++PDV TY ++ G CK G
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
V ELL + I+ G P+V ITF ++ C VGKID+AL +
Sbjct: 439 FAAVDELLGKMIDDGCQPSV------------------ITFGTLVHGYCKVGKIDEALRI 480
Query: 127 LFLMYEHGKIPSRTLYDTLIKKL 149
L M E G P+ +Y+TLI L
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFL 503
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA +++ M + G P+V TY L E+L + +DG +P
Sbjct: 398 FCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPS 457
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ ++ G+CKVG+ +E + +L E G+ PN NVI +N +
Sbjct: 458 VITFGTLVHGYCKVGKIDEALRILRSMDESGIHPN--------NVI----------YNTL 499
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G +D A+ L M E + T ++ L+K L
Sbjct: 500 IDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 34/158 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G PN TY L AYE++ ++N+G+ ++ T ++ G C+ GR+
Sbjct: 240 HGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGA 299
Query: 70 VMELLNEAIERGVTP----NVVT-------LIHLHNV----------IDIGHIPRTITFN 108
+E E +R V P N VT L+H +NV + GH P I +
Sbjct: 300 ALEFFRE--KRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYF 357
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I L G+++ A + M E G Y+ LI
Sbjct: 358 TMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILI 395
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 25 PNVTTYTIL-----------EAYEML--MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
P+V TY IL +A +L M+ ++ ++PDV T V+DG CK GR E +
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229
Query: 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ + + +H G P T+T+N +I A C VG I A L+ M
Sbjct: 230 AFVEQRMSS---------VH-------GCPPNTVTYNCLIDAFCRVGNISMAYELVEKME 273
Query: 132 EHG 134
G
Sbjct: 274 NEG 276
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR-- 103
G P+ TY ++D FC+VG + EL+ + GV N+VTL N I +G + R
Sbjct: 241 GCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTL----NTI-VGGLCRAG 295
Query: 104 ----------------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+T++ ++ AL + A+ L G P +
Sbjct: 296 RTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIM 355
Query: 142 YDTLIKKLDQ 151
Y T+I L Q
Sbjct: 356 YFTMISGLTQ 365
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA +++ M ++G HPN Y L A E+ +K + +
Sbjct: 468 YCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPAN 527
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
V T+ A++ G + EL+++ E P+ VT+
Sbjct: 528 VTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTV 566
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A ++ M + G PN T+ + +A E+L + +G PD+
Sbjct: 446 CSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDL 505
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G+++E +ELLN + +G++PN + + N
Sbjct: 506 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDN 565
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D+ + +N VI +LC G D+A+ L M G +P+ + Y LI+ L
Sbjct: 566 IQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGL 620
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + ++++ M ++G P+V TYT I EA +L ++ G +P+
Sbjct: 375 FCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPN 434
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-- 98
+YT V+ G C R + +L+++ IE+G +PN VT + N I++
Sbjct: 435 TISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLK 494
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P I+++ VI L GK D+AL LL +M G P+ +Y ++ L ++
Sbjct: 495 QMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKE 553
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C+ + +A +++ MFDN + T+ IL + E+L + G PDV
Sbjct: 341 CSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDV 400
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
TYT V++GFCK G +E + LL G PN ++ +
Sbjct: 401 ITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQ 460
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G P +TFN VI LC G +++A+ LL M +G P Y T+I L
Sbjct: 461 MIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGL 515
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFE-ARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKP 49
Y +N FE +V+ M D+G P++ Y T+L+ A+E+L + + GLKP
Sbjct: 269 YLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKP 328
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVT-------LIH-----L 92
+V Y V+ G C R + ELL E + VT N++ L++ L
Sbjct: 329 NVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELL 388
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G +P IT+ VI C G ID+A++LL M G P+ Y ++K L
Sbjct: 389 EQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGL 445
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 31 TILEAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
++ EA +L ++ G PDV +Y AV+ G C R V +L+ E + G PNVVT
Sbjct: 204 SVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTF 263
Query: 90 ---------------IH--LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+H L ++D G P + V+ +C G ++ A +L M
Sbjct: 264 NTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPS 323
Query: 133 HGKIPSRTLYDTLIKKL 149
+G P+ Y+T++K L
Sbjct: 324 YGLKPNVVCYNTVLKGL 340
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F EA +D M D G PN+ TY L +A E+ N+++ G+KP
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----TLIHL-------------HN 94
YTY +D + K G S +E + +G+ PN+V +L L +
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYG 493
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ DIG +P ++T+N +++ VG+ID+A+ LL M E+G P + ++LI L
Sbjct: 494 LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTL 548
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY + EA K++ M +NG P+V L EA++M M +K LKP
Sbjct: 512 CYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K G+ E +EL +++G PN TITFN
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPN------------------TITFNT 613
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ LC ++ AL +LF M + G +P Y+T+I
Sbjct: 614 LFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTIL------EAYEMLMNVKNDGLKPD 50
Y D A + + M G PN+ + Y++ EA ++ +K+ GL PD
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
TY +M + KVG +E ++LL+E +E G P+V+ + L N +
Sbjct: 503 SVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFM 562
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ P +T+N ++ L GKI +A+ L M + G P+ ++TL
Sbjct: 563 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 30/154 (19%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
+EA+++ + M D G PN Y IL A + + +G++PD+ TY+
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
++D C VGR +E + E E G+ P+VV +N +I L
Sbjct: 967 LVDCLCMVGRVDEGLHYFKELKESGLNPDVV------------------CYNLIINGLGK 1008
Query: 117 VGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKKL 149
++++AL+L M G P Y++LI L
Sbjct: 1009 SHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V M G+ P++ TY+ L +L ++ GLKP+VYT+T +
Sbjct: 206 EAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICI 265
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ G+ NE E+L + G P+VV T+ +I ALC
Sbjct: 266 RVLGRAGKINEAYEILKRMDDEGCGPDVV------------------TYTVLIDALCTAR 307
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
K+D A + M P R Y TL+ +
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFS 339
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 31/163 (19%)
Query: 3 CNKNDFFEARKVID-YMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
C N+ AR + + + D G P + TY +L A ++ + VK+ G PD
Sbjct: 760 CKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPD 819
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++D + K G+ +E+ EL E N TIT N V
Sbjct: 820 VATYNFLLDAYGKSGKIDELFELYKEMSTHECEAN------------------TITHNIV 861
Query: 111 IQALCGVGKIDKALLLLF-LMYEHGKIPSRTLYDTLIKKLDQQ 152
I L G +D AL L + LM + P+ Y LI L +
Sbjct: 862 ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKS 904
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C A++V + M + P+ TY T+L+ + + ++ DG PDV
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+T ++D CK G E + L+ ++G+ PN LH T+N +I
Sbjct: 364 VTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN------LH------------TYNTLI 405
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L V ++D AL L M G P+ Y I
Sbjct: 406 CGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 29/148 (19%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
D M D + P TY L EA ++ + + G +P+ Y +++GF K
Sbjct: 880 DLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKA 939
Query: 65 GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
G ++ L ++ GV P++ T++ ++ LC VG++D+ L
Sbjct: 940 GEADAACALFKRMVKEGVRPDLK------------------TYSVLVDCLCMVGRVDEGL 981
Query: 125 LLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ E G P Y+ +I L +
Sbjct: 982 HYFKELKESGLNPDVVCYNLIINGLGKS 1009
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + M G PN T+ L A +ML + + G PDV+TY ++
Sbjct: 591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
G K G+ E M ++ +++ V P+ VTL L
Sbjct: 651 FGLVKNGQVKEAMCFFHQ-MKKLVYPDFVTLCTL 683
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 30/157 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLK 48
C C E + ++G +P+V Y ++ EA + +K G+
Sbjct: 970 CLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGIT 1029
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD+YTY +++ G E ++ NE G+ PNV TFN
Sbjct: 1030 PDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV------------------FTFN 1071
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+I+ GK + A + M G P+ Y+ L
Sbjct: 1072 ALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A +I M G+ P+ +TY+ + A+ + +K++ + P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DV+TYT ++D FCKVG + + +E + G PNVVT LIH
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ G IP +T+ +I C G+I+KA + M + IP +Y
Sbjct: 574 EMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY L EA ++L + +G +P+ Y A++DGFCKVG+ +E +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 74 LNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
+ ERG PNV T L L +++ P I + +I LC
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK D+A L+ +M E G P+ Y +I
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMI 783
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 50/195 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
+C +ARK D M +G PNV TYT L E +EM+++ +G
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLS---EGC 581
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNE--------------AIERG--VTPNVVT--- 88
P+V TYTA++DG CK G+ + ++ I+ G PN+ T
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641
Query: 89 ----LIHLHNV------IDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H V +D+ G P I ++ +I C VGK+D+A ++ M E G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y +LI +L
Sbjct: 702 YGPNVYTYSSLIDRL 716
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY ++ ++ G P+V TYTA++D
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GF K G+ ++ +EL+ + +G PN VT
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 34/175 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D EA +++ M + G HPNV TYT + + E++ + G P
Sbjct: 752 CKVGKTD--EAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAP 809
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE---------------AIERGVTPNVVTLIHLHN 94
+ TY +++ C G ++ +LL+E IE +++L L
Sbjct: 810 NFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDE 869
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + +P + +I + C G+++ AL L H ++ S T Y K L
Sbjct: 870 IAENVAVPIIPAYRILIDSFCKAGRLELALEL------HKEMSSCTSYSAADKDL 918
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 35/181 (19%)
Query: 1 CYC-NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C C K ++++ M G +P+ + L AY++L + + G +
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401
Query: 49 PDVYTYTAVMDGFCKVGR--SNEVMELLNEA----IERGVTPNVVTLIHL---------- 92
P Y ++ G C + S +V+EL +A ++ V N V + +L
Sbjct: 402 PGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKF 461
Query: 93 -------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ G IP T T++ VI LC K+D A LL M + +P Y L
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521
Query: 146 I 146
I
Sbjct: 522 I 522
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------- 89
E L ++ + K D YT ++ G C+ E M+ L+ PNVVT
Sbjct: 285 EALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGC 344
Query: 90 ----------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
L +I G P FN++I A C G A LL M + G P
Sbjct: 345 LRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGY 404
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 405 VVYNILI 411
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++++M +G PNV TY +L A E+ + +G+ P+
Sbjct: 710 YCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN 769
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
V TYTA++DG CK G ++ +E+ N+ IE+G PN++T L +
Sbjct: 770 VVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFA 829
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G IP IT+ +I+A GK++ A L M + G P+ Y LIK L +
Sbjct: 830 ELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNE 888
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 63/214 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC D +A V++ M G+ N+ TY TI++ Y +L +++ G KPD
Sbjct: 605 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 664
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
++YT ++ GFCK+ + L NE ++ G+ PN VT
Sbjct: 665 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 724
Query: 90 ----------IHLHNV---------------------IDIGHIPRTITFNNVIQALCGVG 118
+ +NV I+ G P +T+ +I LC G
Sbjct: 725 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 784
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
AL + M E G +P+ Y +LI+ L Q+
Sbjct: 785 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQE 818
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C K+D A +V + M G PN TY+ L
Sbjct: 430 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 489
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+A+ + +++KN G +P+VYTYTA++ G C G + L +
Sbjct: 490 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 549
Query: 76 EAIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQALCGVG 118
GV PN VT L N++ G +T+N +I+ C +G
Sbjct: 550 RMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILG 609
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
KA+L++ M + G + Y+T+IK
Sbjct: 610 DPKKAMLVMNNMLQRGHSANLVTYNTIIK 638
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ +F++ P+ TYT + A ++ + +G +P+
Sbjct: 396 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 455
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNV----------ID 97
TY+ +++G C GR NE +L+ E I G+ P T +I L ++ +D
Sbjct: 456 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 515
Query: 98 I---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T+ +I LC G + A+ L M G P+ Y+ LI L
Sbjct: 516 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 570
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T +++ Y +++ +G++P++ Y AV++ CK G + ++ + E ++P+ T
Sbjct: 366 TAAVMDRYHRMLS---EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFT 422
Query: 89 LIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ + + G P T+T++ +I LC G++++A L+ M
Sbjct: 423 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 482
Query: 132 EHGKIPS 138
HG +P+
Sbjct: 483 LHGILPT 489
Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHN 94
+ GL+ ++ Y+A++ ++G + VM+ + + GV PN++ L N
Sbjct: 341 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 400
Query: 95 VIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
V D I P T T+ ++I C +D AL + M + G P+ Y T
Sbjct: 401 VADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYST 460
Query: 145 LIKKL 149
LI L
Sbjct: 461 LINGL 465
>gi|219885451|gb|ACL53100.1| unknown [Zea mays]
Length = 437
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 33/181 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + +A +V+D M G P + TY L EA E+L +K+ L P
Sbjct: 100 CLCKRGRVTKAMEVLDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTP 159
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------------------L 89
D+YT+T V+DGFCKVGR+ E + ++AI G++P T L
Sbjct: 160 DIYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALL 219
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-KIPSRTLYDTLIKK 148
+ + D +P +F V+ AL G+ A M G ++ R L DTL +
Sbjct: 220 MEMCGNNDAACLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRAL-DTLARG 278
Query: 149 L 149
L
Sbjct: 279 L 279
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA L + G +P V T++AV+ CK GR + ME+L+ G P +
Sbjct: 74 EAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLGCEPTIR------ 127
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
T+N+++ LC VG++++AL LL
Sbjct: 128 ------------TYNSLVGGLCYVGRLEEALELL 149
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA +D M G P+ TY+IL EA + + K +G+ PDV
Sbjct: 564 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 623
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY+ ++DG CK R+ E E +E + + V PN T+ +N++I
Sbjct: 624 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN------------------TVVYNHLI 665
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A C G++ AL L M G P+ Y +LIK +
Sbjct: 666 RAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 703
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 39/165 (23%)
Query: 2 YCN---KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKN 44
YC ++ + A V + + G P+ TT IL EA++++
Sbjct: 211 YCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--- 267
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
G+ PDVY +T ++ FCK G+ E ++L ++ E GV PNVV
Sbjct: 268 -GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV----------------- 309
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TFN VI L G+ D+A + M E G P+ Y L+K L
Sbjct: 310 -TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGL 353
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y+F + + EA ++ ++ G+ P+V T+ V+DG GR +E +
Sbjct: 274 YLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEK 333
Query: 77 AIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
+ERG+ P ++T L + G P I +NN+I + G
Sbjct: 334 MVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGS 393
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA+ + LM G + + Y+TLIK
Sbjct: 394 LNKAIEIKDLMVSKGLSLTSSTYNTLIK 421
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++ + M G PN TYT L EA + ++ +GL+P+
Sbjct: 668 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 727
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ YTA++DG+ K+G+ +V LL E + V PN IT+ +
Sbjct: 728 VFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN------------------KITYTVM 769
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G + +A LL M E G +P Y I
Sbjct: 770 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 805
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+ N G D T A++ G C+ G+ +E + E + RG
Sbjct: 501 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC----------- 549
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+D +++N +I CG K+D+A + L M + G P Y LI
Sbjct: 550 -VMD------RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 595
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+ M G+ PNV Y L +A E+ + + GL TY ++
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVID-----IGHI------ 101
G+CK G+++ LL E + G N V+ L+ H + D +G +
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
P +I LC GK KAL L F G
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 513
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V++ M HP V TY + EAY + K+ G++ +V
Sbjct: 606 CKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNV 665
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
Y++++DGF KVGR +E +L E +++G+TPNV T LI +
Sbjct: 666 ILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQS 725
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++ P T T++ +I LC V K +KA + M + G IP+ Y T+I L
Sbjct: 726 MKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGL 780
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + + R + + M G+ P+V +Y+IL E + + G
Sbjct: 534 CVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFAL 593
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR----- 103
D Y AV+DG CK G+ ++ E+L E + V P V T +++D + I R
Sbjct: 594 DARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVAT---YGSIVDGLAKIDRLDEAY 650
Query: 104 --------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I ++++I VG+ID+A L+L M + G P+ +++L+ L
Sbjct: 651 MLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDAL 710
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M G PNV T+ L EA ++K P+ YTY+ ++
Sbjct: 683 EAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILI 742
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G C+V + N+ E ++G+ PNVVT + +I L VG
Sbjct: 743 NGLCRVQKYNKAFVFWQEMQKQGLIPNVVT------------------YTTMISGLAKVG 784
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I A L +G IP ++ LI+ +
Sbjct: 785 NITDAYSLFERFKTNGGIPDSASFNALIEGM 815
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K EA + D M + PN++TY I+ EAY++ ++ GL P
Sbjct: 360 CLGKKRKVDEALTLFDVMKKDA-KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFP 418
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
++ + ++D CK + E + A ERG PN ++T+ +
Sbjct: 419 NLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPN------------------SVTYCS 460
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I L GKID A L M + G + +Y +LI+
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNF 500
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE-AIERGV----TPNVVTL 89
A++ +K GL+PD +YT+++ CK GR E EL + ER V N + +
Sbjct: 265 AWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIM 324
Query: 90 IH------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ L + + G IP ++FN+++ L K+D+AL L +M + K P
Sbjct: 325 GYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAK-P 383
Query: 138 SRTLYDTLIKKL 149
+ + Y+ +I L
Sbjct: 384 NISTYNIIIDML 395
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 30/162 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPD 50
Y + F +A K+++ + + G P+V ++ +IL EA + +K D KP+
Sbjct: 326 YGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA-KPN 384
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++D C GR NE ++ +E G+ PN++++ N +
Sbjct: 385 ISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSV------------------NIM 426
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ LC ++++A + E G P+ Y +LI L ++
Sbjct: 427 VDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKK 468
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PNV TYT I +AY + K +G PD ++ A+++G R
Sbjct: 761 MQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANR 820
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
E ++ E RG NV T I L + ++
Sbjct: 821 PMEAYQVFEETRLRGCRLNVKTCISLLDALN 851
Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 27/156 (17%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G P+ +YT + EA E+ ++ + P Y Y ++ G+ R ++
Sbjct: 275 HGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDD 334
Query: 70 VMELLNEAIERGVTPNVVTL----------------IHLHNVIDIGHIPRTITFNNVIQA 113
+LL ERG P+VV+ + L +V+ P T+N +I
Sbjct: 335 AYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDM 394
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G++++A + M G P+ + ++ +L
Sbjct: 395 LCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRL 430
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M D GY +V +T L A ++ VK L+PD+ Y +D
Sbjct: 195 ALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCID 254
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F K G + + +E G+ P+ +++ +++ LC G+
Sbjct: 255 CFGKAGSVDMAWKFFHELKAHGLRPD------------------DVSYTSMVWVLCKAGR 296
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +A L M +P Y+T+I
Sbjct: 297 LGEAEELFGQMEAERDVPCAYAYNTMI 323
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EA ++ + + G +PN TY L +AY + + + G +
Sbjct: 431 CKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANP 490
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+++ F GR + ++ E I RG P++ L N +
Sbjct: 491 IIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLL------------------NTYM 532
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G+++K + M G +P Y LI L +
Sbjct: 533 DCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTK 572
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVT---TYT--ILEAYE------MLMNVKNDGLKPDVYTYTAVM 58
+ K+ M G P++T TY + +A E + ++K+ G PDV +Y+ ++
Sbjct: 508 DGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILI 567
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G K G++ E + ++G + +N V+ LC G
Sbjct: 568 HGLTKAGQARETSNIFQAMSQQGFALDARA------------------YNAVVDGLCKSG 609
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K+DKA +L M P+ Y +++ L
Sbjct: 610 KVDKAYEVLEEMKVKHVHPTVATYGSIVDGL 640
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 28/160 (17%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G+ P+V TY+ + EA EM+ + G+ PDV TYT ++D C+ G+
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 67 SNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNN 109
+E EL ++ IERG + N V LI+ L + G+ P IT+N
Sbjct: 61 VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ LC +GK+ +A M G P Y+ L+ L
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL 160
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A KV++ M G P+V TY IL +A+E+ + ++G PD+
Sbjct: 303 CKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDI 362
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y+ V++G CK + ++ L + IER + P+VV TFN ++
Sbjct: 363 VSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV------------------TFNILM 404
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK+D+A LL +M EH +P TL+ L
Sbjct: 405 DGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGL 442
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEML--MNVKNDGLKP 49
C EA++ D M GY P+V Y + EA+ + M++ + + P
Sbjct: 126 CRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAP 185
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL------------- 92
D+ TY ++DGFC+V +++E M+L + I +G P+ VT L+ L
Sbjct: 186 DLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMF 245
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P T++ V+ C VG + + L L M E P L + +I L
Sbjct: 246 KKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDML 302
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 30/177 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D EA K+ + GY P+ TY + EA EM + + G P
Sbjct: 198 CRVEKTD--EAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAP 255
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHL----------HNVI 96
+ TY+ V+ G C+VG +EL E E+ +P+V+ +I + H V+
Sbjct: 256 NGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVL 315
Query: 97 D----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ IG +P +T+N ++ LC +DKA L M ++G P Y ++ L
Sbjct: 316 EEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 372
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 38/184 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +AR + D M + P+V T+ IL EA ++L + + PD
Sbjct: 373 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDG 432
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG------------ 99
T T +M G C+ R++E + L +E+G +V+ HN++ G
Sbjct: 433 VTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLP----HNIVLAGLCREGKLAQALL 488
Query: 100 -----------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
P +T+ ++ AL G++D+A+ M G P Y+TL+
Sbjct: 489 FFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNG 548
Query: 149 LDQQ 152
L +Q
Sbjct: 549 LRKQ 552
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 34/176 (19%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTI--------------LEAYEMLMNVKNDGLKPD 50
K++ EA ++ M D+G PN TY+I LE YE + + PD
Sbjct: 235 KSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKR---FSPD 291
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------LIH-----LH 93
V AV+D CK + ++ ++L E + G P+VVT L+
Sbjct: 292 VLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 351
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P ++++ V+ LC K+ A +L M E +P ++ L+ L
Sbjct: 352 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGL 407
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + + G +PD
Sbjct: 146 FCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
VYTY+ +++G CK G+ +E EL NE ++ G+ PN V TLIH H
Sbjct: 206 VYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P IT+N +I LC G++ + L+ M +G P + Y TLI
Sbjct: 266 QMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLI 318
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M G P++ TY L + ++++ + +GLKPD
Sbjct: 251 HCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+YT ++DG CK G +EL N+ I+ + + V LI L
Sbjct: 311 KISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ +I C A LL M G +P
Sbjct: 371 EMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLP 414
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ + Y V ++ V G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMEFRYFKLV--------WDFYKEVLECGYPASLYFFNILMQRFCKEGEM 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 153 RLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSIL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC GK+D+A L M ++G +P+ + TLI
Sbjct: 213 INGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A ++ + M + YT L +A +ML + + GLKPD
Sbjct: 322 CKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDN 381
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYT +++ FCK S +LL E G P VVT
Sbjct: 382 GTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA +D M G P+ TY+IL EA + + K +G+ PDV
Sbjct: 551 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 610
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY+ ++DG CK R+ E E +E + + V PN T+ +N++I
Sbjct: 611 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN------------------TVVYNHLI 652
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A C G++ AL L M G P+ Y +LIK +
Sbjct: 653 RAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 690
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 39/165 (23%)
Query: 2 YCN---KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKN 44
YC ++ + A V + + G P+ TT IL EA++++
Sbjct: 198 YCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--- 254
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
G+ PDVY +T ++ FCK G+ E ++L ++ E GV PNVV
Sbjct: 255 -GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV----------------- 296
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TFN VI L G+ D+A + M E G P+ Y L+K L
Sbjct: 297 -TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGL 340
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y+F + + EA ++ ++ G+ P+V T+ V+DG GR +E +
Sbjct: 261 YLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEK 320
Query: 77 AIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
+ERG+ P ++T L + G P I +NN+I + G
Sbjct: 321 MVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGS 380
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA+ + LM G + + Y+TLIK
Sbjct: 381 LNKAIEIKDLMVSKGLSLTSSTYNTLIK 408
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++ + M G PN TYT L EA + ++ +GL+P+
Sbjct: 655 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 714
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ YTA++DG+ K+G+ +V LL E + V PN IT+ +
Sbjct: 715 VFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN------------------KITYTVM 756
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G + +A LL M E G +P Y I
Sbjct: 757 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 792
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+ N G D T A++ G C+ G+ +E + E + RG
Sbjct: 488 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC----------- 536
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+D +++N +I CG K+D+A + L M + G P Y LI
Sbjct: 537 -VMD------RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 582
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+ M G+ PNV Y L +A E+ + + GL TY ++
Sbjct: 348 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 407
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVID-----IGHI------ 101
G+CK G+++ LL E + G N V+ L+ H + D +G +
Sbjct: 408 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 467
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
P +I LC GK KAL L F G
Sbjct: 468 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 500
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M NG PN TY +IL EA L +++DG++PDV
Sbjct: 242 CKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDV 301
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GRS E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 302 VTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDL 361
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P FN +I A K+D+A+L+ M +HG P+ Y +I
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVI 413
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HP+ + IL EA + ++ GL P+
Sbjct: 346 YATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPN 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY AV+ CK G ++ M + I+ G+TPN++ +LIH +
Sbjct: 406 VVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELIL 465
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P+ Y TLI
Sbjct: 466 EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 36/158 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G PNV TY+ L EA ++L ++ + G+KPD
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG--HIPRTI--- 105
TY +++G+C+V R ++ + L E + GV+PN++T +N+I G H RT
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT----YNIILQGLFHTRRTAAAK 601
Query: 106 ----------------TFNNVIQALCGVGKIDKALLLL 127
T+N ++ LC D+AL +
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 639
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 42/183 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA + M +G P+V TY L EA ++ ++ GL+PD
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
+ TY ++ G+ G E+ LL+ + G+ P+ H+V +I
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIHPD-------HHVFNILICAYAKQEKVD 388
Query: 99 ------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+ VI LC G +D A+L M + G P+ +Y +LI
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 448
Query: 147 KKL 149
L
Sbjct: 449 HSL 451
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE M+ + + G PDV +YT V++GF K G S++ +E ++R ++P+VV
Sbjct: 178 LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV----- 232
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I ALC +DKA+ +L M ++G +P+ Y++++
Sbjct: 233 -------------TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSIL 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDN---GYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C++N EA +++ M D+ G P+V +YT + +AY + + +
Sbjct: 169 CDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRIS 228
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
PDV TY++++ CK ++ ME+L ++ GV PN +T ++H
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L + G P +T+N+++ LC G+ +A + M + G P Y TL++
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78
F++ H + ++E+ ++ + G+KP+V TY+ ++DG+C G+ +E +LL+
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMF 538
Query: 79 ERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
G+ P+ V T+N +I C V ++D AL L M G P+
Sbjct: 539 SVGMKPDCV------------------TYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580
Query: 139 RTLYDTLIKKL 149
Y+ +++ L
Sbjct: 581 IITYNIILQGL 591
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 36/175 (20%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
YC + E + M D G PNV+TY L A E+L ++N GLK
Sbjct: 387 AYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKG 446
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI-------- 101
DV TY ++DG CK +S +LLNE G+ PN VT +N + G+
Sbjct: 447 DVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVT----YNTLMDGYCMEGKLKAA 502
Query: 102 -------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
P +T+N +I+ C + K++ A LL M E G P+RT YD
Sbjct: 503 LNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYD 557
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
Query: 2 YCNKND---FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL 47
YC + ++A + M N PN T+ L A + ++ GL
Sbjct: 245 YCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGL 304
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------- 96
KP++ TY ++++G C G+ E ++L ++ + G+ PN+VT L N
Sbjct: 305 KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATK 364
Query: 97 ---DIGH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D+ +P ITFN +I A C G +++ L M + G +P+ + Y+ LI L
Sbjct: 365 VFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGL 423
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A+K + M G PN+ TY L EA ++ + GLKP+
Sbjct: 283 FCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPN 342
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY A+++GFCK E ++ ++ ++ + PNV+T +
Sbjct: 343 IVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCS 402
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++D G +P T+N +I LC + A LL M G Y+ LI L
Sbjct: 403 SMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGL 458
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 40/162 (24%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------EAY--EMLMNVKN 44
C +A I+ M G PNV TY L EA+ EML N
Sbjct: 211 CRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLAN--- 267
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+ P+ T+ ++DGFCK + E ++G+ PN+V
Sbjct: 268 -KICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIV----------------- 309
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N++I LC GK+++A+ L M G P+ Y+ LI
Sbjct: 310 -TYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALI 350
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 28/121 (23%)
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH------------ 100
T+ ++G C+ G+ N+ + + + G++PNVVT +N + G+
Sbjct: 202 TFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVT----YNTLVDGYCKRGSAGKMYKA 257
Query: 101 ------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
P +TFN +I C + A M + G P+ Y++LI
Sbjct: 258 EAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLING 317
Query: 149 L 149
L
Sbjct: 318 L 318
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCNK D A D M G P+V+TY +L EA +M+ ++ G+ PD
Sbjct: 342 YCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPD 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
TY +++G+ + G + + +L NE + +G+ P VT L
Sbjct: 402 AITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFE 461
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D G P I FN ++ C G +++A +LL M P ++TL++
Sbjct: 462 KILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 515
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPDV 51
C + +AR+ I +M G+ PNV +Y TI+ Y N++ G++PD
Sbjct: 238 CKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDS 297
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
YTY +++ G CK GR E L ++ +E G+ PN VT +
Sbjct: 298 YTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDE 357
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G +P T+N ++ AL G++ +A ++ M + G IP Y+ LI
Sbjct: 358 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILI 409
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+N EA + + + D G P+V + + A+ +L + + PD T
Sbjct: 450 RNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVT 509
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN--------------VI 96
+ +M G C+ G+ E LL+E RG+ P+ + TLI + ++
Sbjct: 510 FNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEML 569
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IG P +T+N +I+ LC + D A LL M G P + Y +LI+ +
Sbjct: 570 SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ + AR+++D M G P+ TY L EA + + GL P+
Sbjct: 272 YSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPN 331
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY ++DG+C G +E +++G+ P+V T L+H +
Sbjct: 332 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 391
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G IP IT+N +I G KA L M G P+ Y +LI L ++
Sbjct: 392 EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 450
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------LHNVID 97
VYT+ +++ CK G+ + E + G PNVV T+IH ++D
Sbjct: 227 VYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILD 286
Query: 98 IGHI----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ P + T+ ++I +C G++++A L M E G +P+ Y+TLI
Sbjct: 287 AMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 339
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D +A +V D M G++P + TY L A E+L + N G+ PD
Sbjct: 552 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611
Query: 51 VYTYTAVMDGFCKV 64
TY ++++G V
Sbjct: 612 DSTYLSLIEGMGNV 625
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + EA V+ M + G PNV TY+ ++EA ++ + G KP+
Sbjct: 313 FCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPN 372
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+++Y +++G+CK R +E M+L NE I +G+TPN V TLIH
Sbjct: 373 IFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFR 432
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N+ G++P T++ ++ C G + KA L M P+ +Y L+ +
Sbjct: 433 NMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAM 488
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A ++ M + G PN+ TY+ L EA ++ +K G+ PD+
Sbjct: 209 CKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDI 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT+++ G CK R E LLNE + P++V TFN ++
Sbjct: 269 FTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIV------------------TFNVLV 310
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C GK+ +AL +L M E G P+ Y +L+
Sbjct: 311 DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLM 345
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C V+ + G P + T+T L +A E+ ++ G +P
Sbjct: 137 CFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQP 196
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI- 98
DVYTY +++G CK+G + LL + E G PN+VT L + +DI
Sbjct: 197 DVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIF 256
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P T+ ++IQ LC + +A LL M +P ++ L+
Sbjct: 257 SYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV 310
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
GL P++YT + M+ FC++ R + +L + I+ G+ P +VT L N
Sbjct: 123 GLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQA 182
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ G P T+N +I LC +G+ A LL M E G P+ Y TLI
Sbjct: 183 VELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDS 242
Query: 149 L 149
L
Sbjct: 243 L 243
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA+ + M NG P++ TY+IL +A+ + +++ LKP+
Sbjct: 418 FCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPN 477
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ YT ++ CK G + +L +E +G+ P+V + +
Sbjct: 478 LVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQ------------------LYTTI 519
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I LC G +D+AL M G P Y+ +I+ L Q
Sbjct: 520 INGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQ 560
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +ARK+ +F G P+V YT + EA E N++ DG PD
Sbjct: 489 CKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDE 548
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
+Y ++ G + + + L+ E +RG +V
Sbjct: 549 ISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADV 583
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + + G +PD
Sbjct: 146 FCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
VYTY+ +++G CK G+ +E EL NE ++ G+ PN V TLIH H
Sbjct: 206 VYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P IT+N +I LC G++ + L+ M +G P + Y TLI
Sbjct: 266 QMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLI 318
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M G P++ TY L + ++++ + +GLKPD
Sbjct: 251 HCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+YT ++DG CK G +EL N+ I+ + + V LI L
Sbjct: 311 KISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ +I C A LL M G +P
Sbjct: 371 EMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVP 414
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ + Y V ++ V G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMEFRYFKLV--------WDFYKEVLECGYPASLYFFNILMQRFCKEGEM 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 153 RLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSIL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC GK+D+A L M ++G +P+ + TLI
Sbjct: 213 INGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A ++ + M + YT L +A +ML + + GLKPD
Sbjct: 322 CKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDN 381
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYT +++ FCK S +LL E G P VVT
Sbjct: 382 GTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N EA ++ D M G P++ TY+IL + + + + GL P+
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI---- 105
TY ++ GFC+ G+ N EL E + RGV P+VVT I L + D G + + +
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE 479
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C K+D A L + + G P Y+ +I L
Sbjct: 480 KMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + + K++ M P+V T++ +LEA E+ + G+ PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TY +++DGFCK +E ++ + + +G P++VT L N
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G IP TIT+N ++ C GK++ A L M G PS Y L+ L
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A + ++ G+K DV TY++++ G C G+ ++ ++L E I R + P+VVT L
Sbjct: 263 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 322
Query: 94 NV-----------------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+V I G P TIT+N++I C + +A + LM G
Sbjct: 323 DVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCE 382
Query: 137 PSRTLYDTLI 146
P Y LI
Sbjct: 383 PDIVTYSILI 392
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C K EA +ID M + G+ P+ TY +L A ++ ++ +K V
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI--------------HLHN 94
Y+ V+D CK G ++ + L NE +G+ +VVT LI L
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLRE 305
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I IP +TF+ +I GK+ +A L M G P Y++LI
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+L A+ +L G +PD T++ +++GFC GR +E + L++ +E P++VT+
Sbjct: 121 LLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTV-- 178
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I LC G++ +AL+L+ M E+G P Y ++ +L
Sbjct: 179 ----------------STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRL 220
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC K A V+ + GY P+ T++ L EA ++ + +P
Sbjct: 114 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 173
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLH 93
D+ T + +++G C GR +E + L++ +E G P+ VT + L
Sbjct: 174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233
Query: 94 NVIDIGHIPRTIT-FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +I ++ ++ VI +LC G D AL L M G Y +LI L
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI 90
+A+ + ++ + G+KPDV TY ++ G CK G +E L + E G TP+ T LI
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Query: 91 HLH 93
H
Sbjct: 568 RAH 570
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M NG PN TY +IL EA L +++DG++PDV
Sbjct: 242 CKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDV 301
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GRS E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 302 VTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDL 361
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P FN +I A K+D+A+L+ M +HG P+ Y +I
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVI 413
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HP+ + IL EA + ++ GL P+
Sbjct: 346 YATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPN 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY AV+ CK G ++ M + I+ G+TPN++ +LIH +
Sbjct: 406 VVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELIL 465
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P+ Y TLI
Sbjct: 466 EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 36/158 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G PNV TY+ L EA ++L ++ + G+KPD
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG--HIPRTI--- 105
TY +++G+C+V R ++ + L E + GV+PN++T +N+I G H RT
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT----YNIILQGLFHTRRTAAAK 601
Query: 106 ----------------TFNNVIQALCGVGKIDKALLLL 127
T+N ++ LC D+AL +
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 639
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 42/183 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA + M +G P+V TY L EA ++ ++ GL+PD
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
+ TY ++ G+ G E+ LL+ + G+ P+ H+V +I
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIHPD-------HHVFNILICAYAKQEKVD 388
Query: 99 ------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+ VI LC G +D A+L M + G P+ +Y +LI
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 448
Query: 147 KKL 149
L
Sbjct: 449 HSL 451
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE M+ + + G PDV +YT V++GF K G S++ +E ++R ++P+VV
Sbjct: 178 LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV----- 232
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I ALC +DKA+ +L M ++G +P+ Y++++
Sbjct: 233 -------------TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSIL 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDN---GYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C++N EA +++ M D+ G P+V +YT + +AY + + +
Sbjct: 169 CDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRIS 228
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
PDV TY++++ CK ++ ME+L ++ GV PN +T ++H
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L + G P +T+N+++ LC G+ +A + M + G P Y TL++
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78
F++ H + ++E+ ++ + G+KP+V TY+ ++DG+C G+ +E +LL+
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMF 538
Query: 79 ERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
G+ P+ V T+N +I C V ++D AL L M G P+
Sbjct: 539 SVGMKPDCV------------------TYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580
Query: 139 RTLYDTLIKKL 149
Y+ +++ L
Sbjct: 581 IITYNIILQGL 591
>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+ V M G+ PNV TY+ L +A + N+ G+ PD
Sbjct: 229 FCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPD 288
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ +Y +++GFCK+ ++ M L E R + PNVV T+N++
Sbjct: 289 IQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVV------------------TYNSL 330
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC GKI AL L+ M++ G+ P Y +L+ L
Sbjct: 331 IDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDAL 369
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K++D M D G P++ TY+ L +A +L +K+ GL+P++
Sbjct: 335 CKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNM 394
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT +++G CK GR + + + + +G NV T+ +I
Sbjct: 395 YTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVN------------------TYTVMI 436
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G +AL +L M E+G IP+ Y+ +I+ L
Sbjct: 437 HVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSL 474
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A+ + + M G +P++ +Y IL A + + + P+
Sbjct: 264 YCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPN 323
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY +++DG CK G+ + ++L++E +RG P++ IT++++
Sbjct: 324 VVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDI------------------ITYSSL 365
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ALC DKA+ LL + + G P+ Y LI L
Sbjct: 366 LDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGL 404
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A+ + + + GY+ NV TYT++ EA ML ++ +G P+ TY ++
Sbjct: 412 DAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIII 471
Query: 59 DGFCKVGRSNEVMELLNEAIERGV 82
+++ +LL E I RG+
Sbjct: 472 RSLFDKDENDKAEKLLLEMITRGL 495
>gi|219885281|gb|ACL53015.1| unknown [Zea mays]
gi|414866677|tpg|DAA45234.1| TPA: hypothetical protein ZEAMMB73_414823 [Zea mays]
Length = 559
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 32/163 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + +A +V+D M G P + TY L EA E+L +K+ L P
Sbjct: 222 CLCKRGRVTKAMEVLDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTP 281
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+YT+T V+DGFCKVGR+ E + ++AI G++P T T+N
Sbjct: 282 DIYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPT------------------TFTYNA 323
Query: 110 VIQALCGVGKIDKALLLLFLM---YEHGKIPSRTLYDTLIKKL 149
++ C G KA LL M + +P +T + ++ L
Sbjct: 324 LLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTAL 366
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +P V T++AV+ CK GR + ME+L+ G P +
Sbjct: 208 GFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLGCEPTIR------------------ 249
Query: 106 TFNNVIQALCGVGKIDKALLLL 127
T+N+++ LC VG++++AL LL
Sbjct: 250 TYNSLVGGLCYVGRLEEALELL 271
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY I+ EA E++ + N GL PDV TY+A++DG CK+G+ + +L
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396
Query: 74 LNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
L E + GV P+ T L HL + G P +T+N ++ LC
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ID+A+ L M P Y +I L
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 18/133 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----- 89
AYE ++ G PD +TY+ V+ G CK G ++ ELL + E GV NV+T
Sbjct: 57 AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116
Query: 90 -----IHLHNVIDI--------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + ++I G +P +TFN++++ LC ++ +A +L M + G
Sbjct: 117 GCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE 176
Query: 137 PSRTLYDTLIKKL 149
P+ Y TL+ L
Sbjct: 177 PNVISYSTLLDGL 189
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 31/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEA-------------YEMLMNVKNDGLK 48
C EA K + M + P+ + T++ A ++ + ++K
Sbjct: 277 CRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCP 336
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI 98
P++ TY ++D CK + +E EL+NE G++P+VVT L L D+
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396
Query: 99 -------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P + T +++ AL GK+D AL L M G P Y+TL+ L
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGL 454
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA + +YM G PNV +Y+ L EA + + PD+
Sbjct: 155 CSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDL 214
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI----GHIPRTITF 107
YT+ + G CK R E + + + +G + V VI I GH
Sbjct: 215 VAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAF---STVIGILCKKGHAEEAQ-- 269
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N +I+ LC G +D+A M PS L++TLI
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLI 308
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 15 IDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
++ M G P++ TY L EA L + PDV++YT ++ C+
Sbjct: 432 LETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCR 491
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
G++ + E ++RGV P+ V H+++D
Sbjct: 492 SGQAAGAHAIFQEMVKRGVLPDTVL---YHSLLD 522
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 32/136 (23%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C A + M G P+ Y ++L+ A E+L K KPD
Sbjct: 490 CRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELL---KTSLCKPDF 546
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ V+DG CK G++ + E+ +ER + D G T+ +V+
Sbjct: 547 VMHKMVLDGLCKAGKAEDACEV----VER--------------MADAGFPADAFTYISVV 588
Query: 112 QALCGVGKIDKALLLL 127
L +GK+DKA L+
Sbjct: 589 SGLRKLGKVDKARQLV 604
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY I+ EA E++ + N GL PDV TY+A++DG CK+G+ + +L
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396
Query: 74 LNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
L E + GV P+ T L HL + G P +T+N ++ LC
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ID+A+ L M P Y +I L
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 18/133 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----- 89
AYE ++ G PD +TY+ V+ G CK G ++ ELL + E GV NV+T
Sbjct: 57 AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116
Query: 90 -----IHLHNVIDI--------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + ++I G +P +TFN++++ LC ++ +A +L M + G
Sbjct: 117 GCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE 176
Query: 137 PSRTLYDTLIKKL 149
P+ Y TL+ L
Sbjct: 177 PNVISYSTLLDGL 189
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 31/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEA-------------YEMLMNVKNDGLK 48
C EA K + M + P+ + T++ A ++ + ++K
Sbjct: 277 CRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCP 336
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI 98
P++ TY ++D CK + +E EL+NE G++P+VVT L L D+
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396
Query: 99 -------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P + T +++ AL GK+D AL L M G P Y+TL+ L
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGL 454
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA + +YM G PNV +Y+ L EA + + PD+
Sbjct: 155 CSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDL 214
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI----GHIPRTITF 107
YT+ + G CK R E + + + +G + V VI I GH
Sbjct: 215 VAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAF---STVIGILCKKGHAEEAQ-- 269
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N +I+ LC G +D+A M PS L++TLI
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLI 308
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 15 IDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
++ M G P++ TY L EA L + PDV++YT ++ C+
Sbjct: 432 LETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCR 491
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
G++ + E ++RGV P+ V H+++D
Sbjct: 492 SGQAAGAHAIFQEMVKRGVLPDTVL---YHSLLD 522
Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 32/136 (23%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C A + M G P+ Y ++L+ A E+L K KPD
Sbjct: 490 CRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELL---KTSLCKPDF 546
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ V+DG CK G++ + E+ +ER + D G T+ NV+
Sbjct: 547 VMHKMVVDGLCKAGKAEDACEV----VER--------------MADAGFPADAFTYINVV 588
Query: 112 QALCGVGKIDKALLLL 127
+ L +GK+DKA L+
Sbjct: 589 RGLRKLGKVDKARQLV 604
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + D M D G+ PNV TY L A +L +++ +PDV
Sbjct: 137 CVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDV 196
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
YT+++D CK + E L ++ + +G++P++ T L+H L+
Sbjct: 197 VIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQ 256
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ +P + F+ V+ ALC GK+ +A ++ +M + G P Y TL+
Sbjct: 257 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLM 308
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN ++ +++ M ++ P+V ++ + EA+E++ + G++PDV
Sbjct: 242 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDV 301
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----LHNVIDIGH---- 100
TYT +MDG C +E +++ + + +G P+V+ TLI+ +H + +
Sbjct: 302 VTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEE 361
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IP T T+N ++ LC VG++ A+ L M G++P Y L+ L
Sbjct: 362 MCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSL 416
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +++ EA KV D M G+ P+V +YT L +A + + PD
Sbjct: 311 HCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPD 370
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY +M G C VGR + + L +E + RG P++VT I L ++ H+
Sbjct: 371 TKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLK 430
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +N +I +C G+++ A L + G PS Y+ +I L
Sbjct: 431 AIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 486
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 22 GYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV T IL A+ +L + G +PD T+T ++ G C G+ E
Sbjct: 86 GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEA 145
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+ L ++ I+ G PNVV T+ +I LC VG A+ LL M
Sbjct: 146 LHLFDKMIDEGFQPNVV------------------TYGTLINGLCKVGNTSAAIRLLRSM 187
Query: 131 YEHGKIPSRTLYDTLIKKL--DQQ 152
+ P +Y ++I L D+Q
Sbjct: 188 EQGNCQPDVVIYTSIIDSLCKDRQ 211
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M G P++ TY+IL EA +L ++ L PD+
Sbjct: 382 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDI 441
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++DG C+ G +L + +G+ P+V T+N +I
Sbjct: 442 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSV------------------WTYNIMI 483
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G +++A L M + P Y+T+ + Q
Sbjct: 484 HGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQ 523
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + G HP+V TY I+ EA ++ M + + PD
Sbjct: 452 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDG 511
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + GF + + ++LL E + RG + +V T
Sbjct: 512 CTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVST 548
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N +A ++D M + GY P++ Y + +A++ ++ G++P+
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TYTA+++G C R ++ LL++ I++ +TPNV+T L
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ + P +T+++++ LC +ID+A + LM G + Y+TLI
Sbjct: 285 EMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLI 337
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + + +A +++ M PNV TY+ +LEA E+ + + PD+
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+++++G C R +E ++ + + +G +VV ++N +I
Sbjct: 296 VTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVV------------------SYNTLI 337
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C +++ + L M + G + + Y+TLI+ Q
Sbjct: 338 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G++ D+YT+ V++ FC + + + +L + ++ G P+ VT+ L N
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+++IG+ P + +N +I +LC +++ A + G P+ Y L+
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234
Query: 149 L 149
L
Sbjct: 235 L 235
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A + + M ++ TYT + EA+ + ++ GLKPD+
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDI 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TYT +M G C G +EV L + + G+ N TL
Sbjct: 471 VTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 508
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + K+ M G N TY L +A E + G+ PD
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++TY ++ G C G + + + + +R + ++V T+ V
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV------------------TYTTV 441
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ +C GK+++A L + G P Y T++ L
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++++M +G PNV TY +L A E+ + +G+ P+
Sbjct: 540 YCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN 599
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
V TYTA++DG CK G ++ +E+ N+ IE+G PN++T L +
Sbjct: 600 VVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFA 659
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G IP IT+ +I+A GK++ A L M + G P+ Y LIK L +
Sbjct: 660 ELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNE 718
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C K+D A +V + M G PN TY+ L
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+A+ + +++KN G +P+VYTYTA++ G C G + L +
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 379
Query: 76 EAIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQALCGVG 118
GV PN VT L N++ G P +T+N +I+ C +G
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG 439
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
KA+L++ M + G + Y+T+IK
Sbjct: 440 DPKKAMLVMNNMLQRGHSANLVTYNTIIK 468
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 63/214 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC D +A V++ M G+ N+ TY TI++ Y +L +++ G KPD
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
++YT ++ GFCK+ + L NE ++ G+ PN VT
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554
Query: 90 ----------IHLHNV---------------------IDIGHIPRTITFNNVIQALCGVG 118
+ +NV I+ G P +T+ +I LC G
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
AL + M E G +P+ Y +LI+ L Q+
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQE 648
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ +F++ P+ TYT + A ++ + +G +P+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNV----------ID 97
TY+ +++G C GR NE +L+ E I G+ P T +I L ++ +D
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345
Query: 98 I---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T+ +I LC G + A+ L M G P+ Y+ LI L
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 400
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T +++ Y +++ +G++P++ Y AV++ CK G + ++ + E ++P+ T
Sbjct: 196 TAAVMDRYHRMLS---EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFT 252
Query: 89 LIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ + + G P T+T++ +I LC G++++A L+ M
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312
Query: 132 EHGKIPS 138
HG +P+
Sbjct: 313 LHGILPT 319
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHN 94
+ GL+ ++ Y+A++ ++G + VM+ + + GV PN++ L N
Sbjct: 171 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 230
Query: 95 VIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
V D I P T T+ ++I C +D AL + M + G P+ Y T
Sbjct: 231 VADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYST 290
Query: 145 LIKKL 149
LI L
Sbjct: 291 LINGL 295
>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
Length = 603
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A V+ M PN YT++ EA E+ + DG+ P
Sbjct: 383 FCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPS 442
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVT---LIH-------------- 91
TY V++ CK+ + +E +ELL E R + P++VT +IH
Sbjct: 443 TVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDL 502
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L +ID G IP T+ ++IQ L G GK+ +A+ LL M + G P Y TL++ L
Sbjct: 503 LAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQIL 560
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D +A + + N P + TYT+L A ++ + G KPD+
Sbjct: 174 CARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDI 233
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTI----- 105
Y++++DG K GR +E +L++ + RG P V + + G I +
Sbjct: 234 IAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQE 293
Query: 106 -----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T++ ++ G+GK++KA ++ M + P Y I+ L
Sbjct: 294 MRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEAL 348
Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 67/214 (31%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + EA K I M P V TY+ + +A+ ++ + + P
Sbjct: 279 CKCGR--IQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAP 336
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLH 93
D +YT ++ +GR E ++ +E+G P++ T H+
Sbjct: 337 DTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVL 396
Query: 94 NVIDI------------------------------------GHIPRTITFNNVIQALCGV 117
++D G +P T+T+N VI ALC +
Sbjct: 397 RLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKL 456
Query: 118 GKIDKALLLLFLMYEHGK--IPSRTLYDTLIKKL 149
K+D+AL LL M + PS Y +I L
Sbjct: 457 KKMDEALELLREMQRRKEELEPSIVTYSMIIHGL 490
Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M DNG P+ TYT L A E+L + G+ PD +TY ++ C+
Sbjct: 506 MIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCR-SD 564
Query: 67 SNEVMELLNEAIERGVTPNVVTL 89
+ +LL E + G TPN T
Sbjct: 565 VDAAWDLLQEMMRNGHTPNEFTF 587
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++++M +G PNV TY +L A E+ + +G+ P+
Sbjct: 540 YCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN 599
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
V TYTA++DG CK G ++ +E+ N+ IE+G PN++T L +
Sbjct: 600 VVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFA 659
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G IP IT+ +I+A GK++ A L M + G P+ Y LIK L +
Sbjct: 660 ELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNE 718
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C K+D A +V + M G PN TY+ L
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+A+ + +++KN G +P+VYTYTA++ G C G + L +
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 379
Query: 76 EAIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQALCGVG 118
GV PN VT L N++ G P +T+N +I+ C +G
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG 439
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
KA+L++ M + G + Y+T+IK
Sbjct: 440 DPKKAMLVMNNMLQRGHSANLVTYNTIIK 468
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 63/214 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC D +A V++ M G+ N+ TY TI++ Y +L +++ G KPD
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
++YT ++ GFCK+ + L NE ++ G+ PN VT
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554
Query: 90 ----------IHLHNV---------------------IDIGHIPRTITFNNVIQALCGVG 118
+ +NV I+ G P +T+ +I LC G
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
AL + M E G +P+ Y +LI+ L Q+
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQE 648
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ +F++ P+ TYT + A ++ + +G +P+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNV----------ID 97
TY+ +++G C GR NE +L+ E I G+ P T +I L ++ +D
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345
Query: 98 I---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T+ +I LC G + A+ L M G P+ Y+ LI L
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 400
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T +++ Y +++ +G++P++ Y AV++ CK G + ++ + E ++P+ T
Sbjct: 196 TAAVMDRYHRMLS---EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFT 252
Query: 89 LIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ + + G P T+T++ +I LC G++++A L+ M
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312
Query: 132 EHGKIPS 138
HG +P+
Sbjct: 313 LHGILPT 319
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHN 94
+ GL+ ++ Y+A++ ++G + VM+ + + GV PN++ L N
Sbjct: 171 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 230
Query: 95 VIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
V D I P T T+ ++I C +D AL + M + G P+ Y T
Sbjct: 231 VADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYST 290
Query: 145 LIKKL 149
LI L
Sbjct: 291 LINGL 295
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++++M +G PNV TY +L A E+ + +G+ P+
Sbjct: 540 YCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN 599
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
V TYTA++DG CK G ++ +E+ N+ IE+G PN++T L +
Sbjct: 600 VVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFA 659
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G IP IT+ +I+A GK++ A L M + G P+ Y LIK L +
Sbjct: 660 ELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNE 718
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C K+D A +V + M G PN TY+ L
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+A+ + +++KN G +P+VYTYTA++ G C G + L +
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFH 379
Query: 76 EAIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQALCGVG 118
GV PN VT L N++ G P +T+N +I+ C +G
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG 439
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
KA+L++ M + G + Y+T+IK
Sbjct: 440 DPKKAMLVMNNMLQRGHSANLVTYNTIIK 468
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 63/214 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC D +A V++ M G+ N+ TY TI++ Y +L +++ G KPD
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
++YT ++ GFCK+ + L NE ++ G+ PN VT
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554
Query: 90 ----------IHLHNV---------------------IDIGHIPRTITFNNVIQALCGVG 118
+ +NV I+ G P +T+ +I LC G
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
AL + M E G +P+ Y +LI+ L Q+
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQE 648
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ +F++ P+ TYT + A ++ + +G +P+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNV----------ID 97
TY+ +++G C GR NE +L+ E I G+ P T +I L ++ +D
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345
Query: 98 I---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T+ +I LC G + A+ L M G P+ Y+ LI L
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINIL 400
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T +++ Y +++ +G++P++ Y AV++ CK G + ++ + E ++P+ T
Sbjct: 196 TAAVMDRYHRMLS---EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFT 252
Query: 89 LIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ + + G P T+T++ +I LC G++++A L+ M
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312
Query: 132 EHGKIPS 138
HG +P+
Sbjct: 313 LHGILPT 319
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHN 94
+ GL+ ++ Y+A++ ++G + VM+ + + GV PN++ L N
Sbjct: 171 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 230
Query: 95 VIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
V D I P T T+ ++I C +D AL + M + G P+ Y T
Sbjct: 231 VADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYST 290
Query: 145 LIKKL 149
LI L
Sbjct: 291 LINGL 295
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A ++++ M G+ P V TY + EAY + K++G+K +
Sbjct: 379 FCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLN 438
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V Y++++DGF KVGR +E ++ E +++G+TPNV T LI
Sbjct: 439 VVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQ 498
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ D+ P IT++ +I LC V K +KA + M + G P+ Y T+I L +
Sbjct: 499 SMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAK 556
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 34/180 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + + R + + +G+ P+ +Y+IL E YE+ +K G
Sbjct: 308 CVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVL 367
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR----- 103
D + Y AV+DGFCK G+ N+ +LL E +G P VVT +VID + I R
Sbjct: 368 DTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVT---YGSVIDGLAKIDRLDEAY 424
Query: 104 --------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L++ + + G P+ ++ L+ L
Sbjct: 425 MLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 484
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ G P+V Y + EA + +K D + P+
Sbjct: 100 YGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PN 158
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
V TY ++D C+ G+ N +E+ ++ G+ PNV+T L + + I
Sbjct: 159 VPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFE 218
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF+++I L G++D A L M + G +P +Y +LI+
Sbjct: 219 GMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSF 274
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 37/177 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL---------------------EAYEMLMNVKNDGLK 48
EA +I M + P + YTIL EA E+ ++ +
Sbjct: 28 EAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRKV 87
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHL 92
P Y Y ++ G+ G+ +E LL +G P+V+ + +
Sbjct: 88 PCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 147
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +P T+N +I LC GK++ AL + M G P+ + +I +L
Sbjct: 148 FEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRL 204
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 30/173 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + M D PN T++ L +AY + + + G P
Sbjct: 205 CKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGA 264
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH------------------LH 93
YT+++ F K GR + ++ E + G +P+ +TLI+
Sbjct: 265 IVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD-LTLINTYMDCVFKAGETEKGRALFR 323
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G IP +++ +I L G ++ L + M E G + Y+ +I
Sbjct: 324 EINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVI 376
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ID+M G PN TY ++ +A E+L ++ + G KP+
Sbjct: 209 CKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNT 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
Y V+ GFC + R + E+L+E + PN TL ++L
Sbjct: 269 VNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEK 328
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +T+N VI +C G +D AL LL M G P Y+T++K L
Sbjct: 329 MSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGL 383
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V+D M G P+V TY IL +A E++ ++ +G +P+
Sbjct: 174 CERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNN 233
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI--- 101
TY ++D C+ G ++ ELLN RG PN V + +D I
Sbjct: 234 VTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDE 293
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T N +I LC G + K L L M +HG + Y+ +I + +Q
Sbjct: 294 MVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQ 351
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ + + +A +++ M N P+ +T+ IL+A+E+ + G P+
Sbjct: 384 CSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNS 443
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------------------VVTLIHLH 93
TY+ ++ G K G+ + +ELLNE +G + VV ++ H
Sbjct: 444 TTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVV--H 501
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G P+T+ +N V+ LC GK D A+ +L M G +P + Y LI+ L
Sbjct: 502 KLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGL 557
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + ++ M +G NV TY + A E+L N+++ G KPD+
Sbjct: 314 CRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDI 373
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY V+ G C R + EL+ + + +P TFN +I
Sbjct: 374 VTYNTVLKGLCSADRWEDAEELMIKMSQN------------------DRLPDNSTFNTII 415
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C G I +A + M E G P+ T Y T+I L +
Sbjct: 416 SFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTK 455
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYM-----FDNGYHPNVTTYTILE------AYEMLMNVKNDGLKPD 50
YC +AR+V+ M + Y N + + E A +L + G PD
Sbjct: 138 YCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPD 197
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++ CK + +EL++ G PN +T+N +
Sbjct: 198 VVTYNILLQAACKGRGYRQALELIDFMRAEGCEPN------------------NVTYNVI 239
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I A+C G +D+A LL + G P+ Y+T++K
Sbjct: 240 IDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLK 276
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + ++ G++PD
Sbjct: 146 FCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK R +E L E ++ G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYR 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P +T+N +I LC G + +A LL M G P + Y TLI
Sbjct: 266 QMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLI 318
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A + M + G+ P+V TY L +A +L + GLKPD
Sbjct: 251 HCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G EL I+ + + V LI L
Sbjct: 311 KITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ ++ C G + KA LL M +G++P
Sbjct: 371 EMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 48/132 (36%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +AR ++D M G P+ TYT L
Sbjct: 287 CKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + GLKPD TYT +M+ FCK G + ELL E
Sbjct: 347 VVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLRE 406
Query: 77 AIERGVTPNVVT 88
G P VVT
Sbjct: 407 MQRNGRVPCVVT 418
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--- 101
G +Y + +M FCK G + + + G+ P+VV+ L N I +G +
Sbjct: 131 GYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190
Query: 102 -------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T++ +I LC ++D+A L M ++G +P+ + TLI
Sbjct: 191 FRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLI 248
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M NG PN TY + EA L + +DG++PDV
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P Y T+I
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 31/146 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDG 60
V+ M G PNV +Y IL EA E+L + +DG PDV +YT V++G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
F K G ++ +E ++RG+ PNVVT ++++I ALC +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVT------------------YSSIIAALCKAQAM 250
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
DKA+ +L M ++G +P+ Y++++
Sbjct: 251 DKAMEVLTSMVKNGVMPNCRTYNSIV 276
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL +A + ++ GL PD
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY V+ CK GR + M + I+ ++P I +N++
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG------------------NIVYNSL 450
Query: 111 IQALCGVGKIDKA 123
I +LC K DKA
Sbjct: 451 IHSLCIFDKWDKA 463
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY IL + L NV G + D +T ++ G C R+++ M++
Sbjct: 89 PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + +G IP ++N +++ LC + +AL LL +M +
Sbjct: 149 V-----------------LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 134 GK--IPSRTLYDTLI 146
G P Y T+I
Sbjct: 192 GGDCPPDVVSYTTVI 206
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N EA +++D M G PN+ TY+IL + + + GL D
Sbjct: 359 FCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVAD 418
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI---- 105
TY ++ GFC+ G+ N EL E + RGV P+VVT I L + D G + + +
Sbjct: 419 TVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFE 478
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C K+D A L + G P Y+ +I L
Sbjct: 479 KMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGL 534
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + + K++ M PNV T++ +LEA E+ + G+ PD
Sbjct: 290 CNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDT 349
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TY++++DGFCK R E ++L+ + +G PN+VT L N
Sbjct: 350 ITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCE 409
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + T+T+N ++Q C GK++ A L M G PS Y L+ L
Sbjct: 410 ISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGL 464
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A + ++ G+K DV Y++++ G C GR ++ ++L E I R + PNVVT L
Sbjct: 262 DALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALI 321
Query: 94 NV-----------------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+V + G P TIT++++I C ++ +A +L LM G
Sbjct: 322 DVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCE 381
Query: 137 PSRTLYDTLI 146
P+ Y LI
Sbjct: 382 PNIVTYSILI 391
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+L A+ ++ G +P+ T++ +++GFC GR +E + L++ +E PNVVT+
Sbjct: 120 LLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTV-- 177
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N +I LC G++ +AL+L+ M ++G + Y ++ ++
Sbjct: 178 ----------------NTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRM 219
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 66/173 (38%), Gaps = 30/173 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY------------TILEAYEMLMNVKNDGLKPD 50
C K EA +ID M G N TY T L A ++ ++ +K
Sbjct: 185 CLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTAL-ALDLFRKMEERSIKAS 243
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
V Y+ V+D CK G ++ + L NE +G+ +VV L
Sbjct: 244 VVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLR 303
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I IP +TF+ +I GK+ +A L M G P Y +LI
Sbjct: 304 EMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLI 356
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI 90
+A+ + ++ G+KPDV TY ++ G CK G +E L + E G P+ T LI
Sbjct: 507 DAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILI 566
Query: 91 HLH 93
H
Sbjct: 567 RAH 569
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A ++++ M G+ P V TY + EAY + K++G+K +
Sbjct: 624 FCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLN 683
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V Y++++DGF KVGR +E ++ E +++G+TPNV T LI
Sbjct: 684 VVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQ 743
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ D+ P IT++ +I LC V K +KA + M + G P+ Y T+I L +
Sbjct: 744 SMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAK 801
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 34/180 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + + R + + +G+ P+ +Y+IL E YE+ +K G
Sbjct: 553 CVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVL 612
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR----- 103
D + Y AV+DGFCK G+ N+ +LL E +G P VVT +VID + I R
Sbjct: 613 DTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVT---YGSVIDGLAKIDRLDEAY 669
Query: 104 --------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L++ + + G P+ ++ L+ L
Sbjct: 670 MLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 729
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ G P+V Y + EA + +K D + P+
Sbjct: 345 YGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PN 403
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
V TY ++D C+ G+ N +E+ ++ G+ PNV+T L + + I
Sbjct: 404 VPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFE 463
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF+++I L G++D A L M + G +P +Y +LI+
Sbjct: 464 GMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSF 519
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLM---NVKNDGLKPDVYTYTAVM 58
EA +I M + P + YTIL E ML+ ++ G + +V+ +T ++
Sbjct: 178 EAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLI 237
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDIGHI 101
F + GR + + LL+E + ++V + H + G +
Sbjct: 238 RVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLM 297
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ ++I LC ++D+A+ L + ++ K+P Y+T+I
Sbjct: 298 PDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMI 342
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
+++ +K+ GL PD TYT+++ CK R +E +EL E +E+
Sbjct: 284 SWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELF-EQLEQNR------------ 330
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+P +N +I GK D+A LL G IPS Y+ ++ L ++
Sbjct: 331 -----KVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKK 383
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 27/176 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ + K M +G P+ TYT + EA E+ ++ + P
Sbjct: 274 CFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVP 333
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
Y Y ++ G+ G+ +E LL +G P+V+ + +
Sbjct: 334 CAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIF 393
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +P T+N +I LC GK++ AL + M G P+ + +I +L
Sbjct: 394 EEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRL 449
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 30/173 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + M D PN T++ L +AY + + + G P
Sbjct: 450 CKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGA 509
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH------------------LH 93
YT+++ F K GR + ++ E + G +P+ +TLI+
Sbjct: 510 IVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD-LTLINTYMDCVFKAGETEKGRALFR 568
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G IP +++ +I L G ++ L + M E G + Y+ +I
Sbjct: 569 EINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVI 621
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +F EA++V M + G PN+ TY +L EA+++ ++N GL PD
Sbjct: 484 YCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 543
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYT T+++ G C G+ + ++L +E +RG+ PNVV T+ +
Sbjct: 544 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV------------------TYTAM 585
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ ++A L M E G P T+Y +L+ L
Sbjct: 586 ISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 624
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 31/162 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C N+ D EA+ ++ M + G PN ++T L EA + ++ G P
Sbjct: 450 CKLNRKD--EAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVP 507
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
++ TY ++DG+ K G E +L +E RG+ P+V T L
Sbjct: 508 NIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSL----------------- 550
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I C GK+D AL L M + G +P+ Y +I L +
Sbjct: 551 -IHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSK 591
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 64/192 (33%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN--------- 41
C C + A + D M D G P+ TY L EA +ML+N
Sbjct: 343 CNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDL 402
Query: 42 ---------------------------VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
++ GL+ DV+ Y ++ G CK+ R +E LL
Sbjct: 403 NPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLL 462
Query: 75 NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ERGV+PN T++F +I C G +A + M E G
Sbjct: 463 FSMVERGVSPN------------------TMSFTTLIDIYCKEGNFVEAKRVFREMEEKG 504
Query: 135 KIPSRTLYDTLI 146
+P+ Y+ LI
Sbjct: 505 NVPNIITYNVLI 516
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D +++ M G NV TYT+L EA + ++ G++ D
Sbjct: 274 YFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD 333
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT----- 104
VY YT+++ C+ G + L +E ++G+ P+ T L H V G +
Sbjct: 334 VYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVN 393
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ FN +I C G +D+AL L +M + G
Sbjct: 394 EMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG 434
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI--------------LEAYEMLMNVKNDGL 47
Y + F EA + ++M G+H + + + L + ++N+ +
Sbjct: 169 YADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLD---V 225
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVID 97
+ VY+ T V+DG CK G +L++E +GV NVVT + L V +
Sbjct: 226 EVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAE 285
Query: 98 I-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G +T+ +I +GKI++A L M E G +Y ++I
Sbjct: 286 ILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSII 341
>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 790
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA+K++ M+ +G PN TYT+L EA EM+ + P+
Sbjct: 453 FCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPN 512
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHNVIDI----- 98
TY+AVM G + G+ +E +L E IE+G PN V +L NV+
Sbjct: 513 AITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLE 572
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G + F +VI C +G +D AL +L MY K P Y TL L ++
Sbjct: 573 ECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKK 631
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 21/149 (14%)
Query: 22 GYHPNVTTY----TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
GY V ++ I +A +++++ + G PDV TYTA++DGFC+VG+ +E ++L +
Sbjct: 410 GYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQM 469
Query: 78 IERGVTPNVVTLIHLHN-------------VIDIGH----IPRTITFNNVIQALCGVGKI 120
+ G PN VT L N +I++ P IT++ V+ L GK+
Sbjct: 470 YKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKL 529
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A L M E G +P+ + LI+ L
Sbjct: 530 SEACDLTREMIEKGFLPNPVDINLLIQSL 558
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 31/137 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A +++ M+ + HP+ TYT L EA E+++ + G+ P
Sbjct: 593 FCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPT 652
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY AV+ FC+ GR +++M+LL + I R P +N V
Sbjct: 653 PVTYRAVIHRFCQWGRVDDMMKLLEKMIARQ--------------------PFKTVYNQV 692
Query: 111 IQALCGVGKIDKALLLL 127
I+ LC G ++A LL
Sbjct: 693 IEKLCYFGNREEAEKLL 709
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C E +++++ M N P+ TY L +A L + G D
Sbjct: 348 CKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHID 407
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+AV+D FCK ++ L+ + +G P+VV T+ +
Sbjct: 408 KVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVV------------------TYTAI 449
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C VGKID+A +L MY+HG P+ Y L+ L
Sbjct: 450 IDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGL 488
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 11 ARKVIDYMFDNGYHP-----NVTTYTILE------AYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M G P N Y +++ A L +K G++PD+ +Y ++
Sbjct: 251 ALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIK 310
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGH-----------I 101
G+C V R ++ +EL+ E +G P+ V+ L V ++ I
Sbjct: 311 GYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLI 370
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
P +T+N +I AL G D AL+ L E G
Sbjct: 371 PDQVTYNTLIYALSKHGHADDALVFLREAEEKG 403
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +N FEAR V D M G PNV +Y IL EA E+ + GL P+
Sbjct: 339 YCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPN 398
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ Y ++ G C+ GR E EL + +G +P++VT L
Sbjct: 399 TFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTIL------------------ 440
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +LC +G +D AL L M + P+ YD LI+ +
Sbjct: 441 LDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAM 479
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C ++ F A + D M +GY PN+ TY TI++ + +L + G +PD+
Sbjct: 165 CFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDI 224
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y ++DG CK +E +++ +E +GV P+V T L+H +
Sbjct: 225 VIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNE 284
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ + +P +TFN ++ LC G + +A ++ +M E G P+ Y++L+
Sbjct: 285 MMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLM 336
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + G P+V TY+IL EA + + + + PDV
Sbjct: 235 CKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDV 294
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
T+ ++D CK G +E ++ IE+GV PN T L N
Sbjct: 295 VTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDA 354
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I G +P +++N +I C +ID+A L M G IP+ Y+TLI L Q
Sbjct: 355 MITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQ 411
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + + A+ V D + G P+V ++ L + +++ + G++PD
Sbjct: 146 FCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + NE +L NE +++G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A LL M G P + Y TLI
Sbjct: 266 QMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLI 318
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H I A + ++ GL+P V ++ +M+G+ ++G ++ +L N
Sbjct: 137 YFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNA 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C GK
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGK 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ M +P Y+TLI
Sbjct: 257 VDSAMETYKQMLSQCFLPDLITYNTLI 283
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A + M + P++ TY L +A ++L ++ GLKPD
Sbjct: 251 HCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + EL ++ + + V LI L
Sbjct: 311 KITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ +I C + A LL M G +P
Sbjct: 371 EMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A ++ + M + YT L +A +ML + + GLKPD
Sbjct: 322 CKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDN 381
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYT +++ FCK +LL E +G P VVT
Sbjct: 382 GTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
F RKV++++ Y V + ILE G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYKEILEC----------GYPASLYFFNILMHRFCKEG 150
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFN 108
+ + + G+ P+VV+ L N I +G + P T++
Sbjct: 151 EIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYS 210
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC K+++A L M + G +P+ + TLI
Sbjct: 211 VLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLI 248
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A ++++ M + P V TY + EAY + K+ G++ +
Sbjct: 608 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELN 667
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V Y++++DGF KVGR +E +L E +++G+TPNV T L+
Sbjct: 668 VVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQ 727
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ P T T++ +I LC V K +KA + M + G +P+ Y T+I L
Sbjct: 728 SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 783
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + + R + + + G+ P+V +Y+IL E + +K G
Sbjct: 537 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL 596
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR------ 103
D Y AV+DGFCK G+ ++ E+L E E+ V P V T + V + I R
Sbjct: 597 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI--VDGLAKIDRLDEAYM 654
Query: 104 -------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L+L M + G P+ +++L+ L
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 713
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M G PNV T+ L EA ++K P+ YTY+ ++
Sbjct: 686 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILI 745
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G C+V + N+ + ++G+ PNVVT + +I L VG
Sbjct: 746 NGLCRVQKYNKAFVFWQDMQKQGLVPNVVT------------------YTTMISGLAKVG 787
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I A L +G IP ++ LI+ +
Sbjct: 788 NITDAYSLFERFKANGGIPDAASFNALIEGM 818
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K EA + + M + PN +TY I+ EAY +L +++ L P
Sbjct: 363 CLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFP 421
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
++ T ++D CK + E ++ A +RG P+ V T+ +
Sbjct: 422 NLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCV------------------TYCS 463
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I L G++D+A L M + G + +Y +LI+
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 503
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 27/176 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ + A K + G P+ +YT + EA E+ ++ + P
Sbjct: 258 CFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVP 317
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLH 93
Y Y ++ G+ GR + +LL ERG P+VV+ + L
Sbjct: 318 CAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF 377
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+ P + T+N +I LC G++++A +L M P+ + ++ +L
Sbjct: 378 EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRL 433
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE-AIERGVTPNVVTLIHLH 93
A++ +K GLKPD +YT+++ CK GR E EL + ER V
Sbjct: 268 AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSV----------- 316
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +N +I G+ + A LL + E G IPS +++++ L ++
Sbjct: 317 --------PCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKK 367
Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PNV TYT I +AY + K +G PD ++ A+++G R
Sbjct: 764 MQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANR 823
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
+ E ++ E RG N+ + I L + ++
Sbjct: 824 AMEAYQVFEETRLRGCRINIKSCISLLDALN 854
Score = 41.6 bits (96), Expect = 0.099, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M + GY V +T L +A ++ VK L+PD+ Y +D
Sbjct: 198 ALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCID 257
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F K G + + +E +G+ P+ +++ ++I LC G+
Sbjct: 258 CFGKAGNVDMAWKFFHELKAQGLKPD------------------DVSYTSMIWVLCKAGR 299
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +A L M +P Y+T+I
Sbjct: 300 LGEAEELFAQMEAERSVPCAYAYNTMI 326
Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K+ + G +P+ TY L EAY + + + G +
Sbjct: 434 CKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANP 493
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+++ F GR + ++ E I RG P++ L N +
Sbjct: 494 VVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLL------------------NTYM 535
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G+++K ++ + +G +P Y LI L +
Sbjct: 536 DCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 575
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M NG PN TY + EA L + +DG++PDV
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P Y T+I
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL +A + ++ GL PD
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY V+ CK GR + M + I+ ++P N+V +LIH +
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P Y TLI
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 31/146 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDG 60
V+ M G PNV +Y IL EA E+L + +DG PDV +YT V++G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
F K G ++ +E ++RG+ PNVVT ++++I ALC +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVT------------------YSSIIAALCKAQAM 250
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
DKA+ +L M ++G +P+ Y++++
Sbjct: 251 DKAMEVLTSMVKNGVMPNCRTYNSIV 276
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G P++ TY+ L EA ++L ++ + G+KPD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY +++G+CK+ R + + L E GV+P+++T
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M D P Y L +A E+++ + + G+ D
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+ +++D CK GR E +L + + GV P+++ TLI L +
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +G P +T+N +I C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 28/121 (23%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY IL + L NV G + D +T ++ G C R+++ M++
Sbjct: 89 PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + +G IP ++N +++ LC + +AL LL +M +
Sbjct: 149 V-----------------LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 134 G 134
G
Sbjct: 192 G 192
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKP 49
C+ + A + I M ++G+ PN+ T+ T++ Y L NV + GL P
Sbjct: 434 CFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMP 493
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI--- 105
DV T+T+++DG C + ++ +E E GV PNV T + +H + GH+ + I
Sbjct: 494 DVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELL 553
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+FN I + C + KI+KA L M +G P Y+ LIK L
Sbjct: 554 NKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKAL 610
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 29/139 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A M + G PNV TY +L +A E+L +K DG+ PD
Sbjct: 506 CHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDA 565
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y++ A + FC++ + + +L N+ GV+P+ + T+N +I
Sbjct: 566 YSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPD------------------SYTYNALI 607
Query: 112 QALCGVGKIDKALLLLFLM 130
+ALC ++D+A ++ M
Sbjct: 608 KALCDERRVDEAKEIILAM 626
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +A + + +DGL V +Y V+D F K G +E + E G +PN+VT
Sbjct: 406 ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNT 465
Query: 92 LHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L N V++ G +P ITF ++I LC ++D A M E G
Sbjct: 466 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 525
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+ LI L
Sbjct: 526 VRPNVQTYNVLIHGL 540
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
AY + DG +PD +TY ++ G C+ G +E + L+ + G+ PNVV
Sbjct: 199 AYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVV------- 251
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ ++ C ++++A+ +L M E G + Y +L+
Sbjct: 252 -----------TYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLV 292
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G P+ TY L EA ++ ++ G++P+V TYT ++DGFC R
Sbjct: 206 MPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 265
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH 91
E + +L E+GV+ T L+H
Sbjct: 266 VEEAVCVLERMKEKGVSATEATYRSLVH 293
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKP 49
C+ + A + I M ++G+ PN+ T+ T++ Y L NV + GL P
Sbjct: 434 CFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMP 493
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI--- 105
DV T+T+++DG C + ++ +E E GV PNV T + +H + GH+ + I
Sbjct: 494 DVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELL 553
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+FN I + C + KI+KA L M +G P Y+ LIK L
Sbjct: 554 NKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKAL 610
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 29/139 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A M + G PNV TY +L +A E+L +K DG+ PD
Sbjct: 506 CHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDA 565
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y++ A + FC++ + + +L N+ GV+P+ + T+N +I
Sbjct: 566 YSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPD------------------SYTYNALI 607
Query: 112 QALCGVGKIDKALLLLFLM 130
+ALC ++D+A ++ M
Sbjct: 608 KALCDERRVDEAKEIILAM 626
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +A + + +DGL V +Y V+D F K G +E + E G +PN+VT
Sbjct: 406 ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNT 465
Query: 92 LHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L N V++ G +P ITF ++I LC ++D A M E G
Sbjct: 466 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 525
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+ LI L
Sbjct: 526 VRPNVQTYNVLIHGL 540
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
AY + DG +PD +TY ++ G C+ G +E + L+ + G+ PNVV
Sbjct: 199 AYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVV------- 251
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ ++ C ++++A+ +L M E G + Y +L+
Sbjct: 252 -----------TYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLV 292
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G P+ TY L EA ++ ++ G++P+V TYT ++DGFC R
Sbjct: 206 MPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 265
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH 91
E + +L E+GV+ T L+H
Sbjct: 266 VEEAVCVLERMKEKGVSATEATYRSLVH 293
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A V + M D+G PNV T TIL EA+ L V+ G+ P+
Sbjct: 431 FCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPN 490
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
+ Y +++G CKV +S+ V + + I+RG P+ V H
Sbjct: 491 LCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFH 550
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P T+ ++I LC ++ + + L M G P R LY +LI
Sbjct: 551 KMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLI 603
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGL 47
C +N AR + D M +G PNV +Y++L EA+E+L ++ G+
Sbjct: 183 CLVERNQIIYARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGV 242
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
KP+ TY + G + + L +RG N T F
Sbjct: 243 KPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCN------------------TYCF 284
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N VIQ C G++ +A+ + M + G +P Y L+ L +Q
Sbjct: 285 NAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQ 329
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 30/174 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C NK+D + M GY P+ Y+I+ EA+ + + ++G KP
Sbjct: 502 CKVNKSD--HVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKP 559
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
+V+TYT++++G C R EV+ L I G+TP+ + L
Sbjct: 560 NVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIF 619
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +G + +I V +D A L+ M G PS Y LI
Sbjct: 620 RGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLI 673
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIH 91
PD Y YT+++ FC+ + + + ++ GV+PNVVT +
Sbjct: 419 PDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLF 478
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LH V G +P + +I LC V K D + M + G +P +Y +I
Sbjct: 479 LHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIII 533
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA E+ +K GL PD ++Y+ ++DG CK G +LL E G+ P +V
Sbjct: 297 VQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLV---- 352
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++++++ LC GK++ A L + E G +Y ++
Sbjct: 353 --------------SYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIIL 393
Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + E + +M G P+ YT L A E+ + GL D
Sbjct: 572 CHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADA 631
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPR-TITFNN 109
+ YT ++ GF KV + L+ E +G+TP+VVT +L IG + +T+N+
Sbjct: 632 FLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNS 691
Query: 110 VIQA 113
++QA
Sbjct: 692 MLQA 695
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKP 49
CYC +++ A ++ M G + YT L + + LM + N GL P
Sbjct: 605 CYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTP 664
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
V TYT ++ G+ K+G + N ++ G+TP+
Sbjct: 665 SVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPD 700
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 28/158 (17%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D+ PNV TY++L +A E+L ++K G PDV TYT ++DG CK +
Sbjct: 106 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVA 165
Query: 69 EVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVI 111
E+L E ++ G PN+VT L+H + ++ G P +T+ +I
Sbjct: 166 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 225
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC VG++ A +L M + G P +Y+ LI L
Sbjct: 226 DGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 263
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A ++++ M G P+V TYTIL A+E+L + + G P++
Sbjct: 124 CKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL 183
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY +++ G C+ R ++ + L+ + RG TPNVV TLI L +
Sbjct: 184 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 243
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ID G P + +N +I LC ++D+++ LL G P Y ++I L
Sbjct: 244 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL 298
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EA +++ Y+ G P+V Y+ L EA+++ + DG DV
Sbjct: 299 CRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADV 358
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
TY+ ++DG CK GR +E LL + G P+ +T L + D+ H+
Sbjct: 359 VTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEE 418
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFL-MYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N +I +C + ++D A L F M ++G IP Y L++ L +
Sbjct: 419 MERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKK 476
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 28/160 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G P++ Y +L E+ +L + G+KPDV TY++V+ G C+ R
Sbjct: 244 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 303
Query: 67 SNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-------GHIPRTITFNN 109
+E LL RG P+V+ TLI + D+ G +T++
Sbjct: 304 LDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYST 363
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC G++D+A LLL M G PS Y++LIK L
Sbjct: 364 LIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 403
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D+G PNV TY L A E+ ++K+ P + TY ++DG + G+
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60
Query: 67 SNEVMELLNEAIERG----VTPNVV-----------TLIHLHNVIDIGHIPRTITFNNVI 111
M L E ++R ++ N++ T + +D P IT++ +I
Sbjct: 61 LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC ++ +A+ LL M G P Y L+ L
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGL 158
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V D M NG PN TYT L EA + L + ++G++P+V
Sbjct: 244 CKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNV 303
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY++ MD CK GR E ++ ++RG+ P++ T L+ +H + D+
Sbjct: 304 VTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDL 363
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P FN +I A GK+D+A+L+ M G P+ Y+TLI
Sbjct: 364 MVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLI 415
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C++N EA +++ M D+G PNV +Y+ + +AY + + + P
Sbjct: 172 CHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILP 231
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI------- 101
+V TY++++ CK ++ ME+ + ++ GVTPN T L H G +
Sbjct: 232 NVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFL 291
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+++ + LC G+ +A + + M + G P T Y +L+
Sbjct: 292 EKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLL 345
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 64/194 (32%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ EA K ++ M NG PNV TY+ EA ++ ++ GLKPD
Sbjct: 278 FCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPD 337
Query: 51 VYTYTAVMDGFC-----------------------------------KVGRSNEVMELLN 75
+ TY++++ G+ K G+ +E M + +
Sbjct: 338 ITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFS 397
Query: 76 EAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ +G+ PN V T+N +I C + +++ AL L M +G
Sbjct: 398 KMRHQGLKPNCV------------------TYNTLINGYCKITRMENALALFQEMVSNGV 439
Query: 136 IPSRTLYDTLIKKL 149
P+ Y+ +++ L
Sbjct: 440 SPNFITYNIMLQGL 453
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 19/120 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE--RGVTPNVVTLIHL----------- 92
G P+V+++T ++ G C RS E +ELL+ + G PNVV+ +
Sbjct: 156 GCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPD 215
Query: 93 ------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D +P +T++++I ALC +DKA+ + M ++G P+ Y +L+
Sbjct: 216 KAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLV 275
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C+ + +A VI M G+ P+ +TY+ + A+ + +K GL
Sbjct: 416 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 475
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + + NE E G TPNVVT LIH
Sbjct: 476 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 535
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ G +P +T++ +I C G+++KA + M +P +Y
Sbjct: 536 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 585
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAY----------EMLMNVKNDGLKPD 50
+C +ARK + M + G PNV TYT L AY E+ + ++G P+
Sbjct: 487 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 546
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY+A++DG CK G+ + ++ P+V ++ D P +T+ +
Sbjct: 547 IVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD--MYFKQYDDNSERPNVVTYGAL 604
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C ++++A LL M G P++ +YD LI L
Sbjct: 605 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 643
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
DN PNV TY L EA ++L + +G +P+ Y A++DG CKVG+ +
Sbjct: 591 DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLD 650
Query: 69 EVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVI 111
E E+ E E G + T L +++ P + + +I
Sbjct: 651 EAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMI 710
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC VGK D+A L+ +M E G P+ Y +I
Sbjct: 711 DGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 745
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY+++ ++ G +P+V TYTA++D
Sbjct: 687 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 746
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GF +G+ +ELL +GV PN VT
Sbjct: 747 GFGMIGKIETCLELLERMGSKGVAPNYVT 775
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EARK++D M G PN Y L EA E+ + G
Sbjct: 608 FCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 667
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+YTY++++D + KV R + ++L++ +E PNVV + + +
Sbjct: 668 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 727
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+ +I +GKI+ L LL M G P+ Y LI
Sbjct: 728 MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 780
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL 92
E L V+ + PD YT ++ G C+ E M+ LN PNVVT L
Sbjct: 247 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 306
Query: 93 HNVIDIGHIPRTIT-------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
N +G R + FN+++ A C G A LL M + G +P
Sbjct: 307 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 366
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 367 VVYNILI 373
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 65/212 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C K D EA K++ M + G PNV TYT I E+L + + G+ P
Sbjct: 714 CKVGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAP 771
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE--------------------------------- 76
+ TY ++D CK G + LL E
Sbjct: 772 NYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDE 831
Query: 77 ----------AIERGVTPNVVTLIHLHNVI----DIGHIPRTI-----TFNNVIQALCGV 117
++ R + N++ L + ++ T+ T+N++I++LC
Sbjct: 832 IGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLA 891
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K++ A L M + G IP + +LIK L
Sbjct: 892 NKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 923
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M PNV TY+ L +L + +G P
Sbjct: 272 CEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSP 331
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHL- 92
+ +++ +C G + +LL + ++ G P V L+ L
Sbjct: 332 KIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLA 391
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ G + I ++ + LC GK +KA ++ M G IP + Y ++
Sbjct: 392 EKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNY 451
Query: 149 L 149
L
Sbjct: 452 L 452
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M NG PN TY + EA L + +DG++PDV
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P Y T+I
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL +A + ++ GL PD
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY V+ CK GR + M + I+ ++P N+V +LIH +
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P Y TLI
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 31/146 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDG 60
V+ M G PNV +Y IL EA E+L + +DG PDV +YT V++G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
F K G ++ +E ++RG+ PNVVT ++++I ALC +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVT------------------YSSIIAALCKAQAM 250
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
DKA+ +L M ++G +P+ Y++++
Sbjct: 251 DKAMEVLTSMVKNGVMPNCRTYNSIV 276
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G P++ TY+ L EA ++L ++ + G+KPD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY +++G+CK+ R + + L E GV+P+++T
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M D P Y L +A E+++ + + G+ D
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+ +++D CK GR E +L + + GV P+++ TLI L +
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLAS 539
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +G P +T+N +I C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 28/121 (23%)
Query: 25 PNVTTYTILEA-----------YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY IL + L NV G D +T ++ G C R+++ M++
Sbjct: 89 PNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDI 148
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + +G IP ++N +++ LC + +AL LL +M +
Sbjct: 149 V-----------------LRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDD 191
Query: 134 G 134
G
Sbjct: 192 G 192
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A ++I M G+ P+ +TY+ + +A+ + +K G+ P
Sbjct: 431 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 490
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + L E G +P VVT LIH
Sbjct: 491 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 550
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
H ++D G P +T+ ++ LC G I KA
Sbjct: 551 HRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 582
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +++D M +G PN Y L A E+ + + G P V
Sbjct: 624 CKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSV 683
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT+++D K GR + M++L++ ++ TPNVVT + +I
Sbjct: 684 HTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVT------------------YTAMI 725
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC +G+ +KAL LL LM E G P+ Y LI L Q
Sbjct: 726 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQ 765
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A++V M GY P+V TYT L A ++L + D P+
Sbjct: 658 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 717
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
V TYTA++DG C++G S + ++LL+ E+G +PNVVT L
Sbjct: 718 VVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 759
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A+ + + M G P V TYT L +A ++ + + G +P+
Sbjct: 502 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 561
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI----------------ERGVTPNVVT------ 88
TY A++DG CK G ++ E+ + I + PNVVT
Sbjct: 562 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 621
Query: 89 -------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ H H ++D G P I ++ +I C GKID A + M + G +P
Sbjct: 622 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 681
Query: 138 SRTLYDTLIKKL 149
S Y +LI ++
Sbjct: 682 SVHTYTSLIDRM 693
Score = 42.7 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLK 48
YCN+ D+ A K+++ M G P Y I + ++ + + L
Sbjct: 356 YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLA 415
Query: 49 PDVYTYTAVMDGF----CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+ + F C VG+ ++ +L+ E + +G P+ T
Sbjct: 416 ANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPD------------------T 457
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++ VI LC K++KA LL M G P Y LI
Sbjct: 458 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 499
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
+++I+ M G +PN + + L AY++L + G P Y +
Sbjct: 331 KRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGS 390
Query: 61 FCKVGR--SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
C + S ++++L + + N V N +++ + R LCGVG
Sbjct: 391 ICGQEKLPSPDLLDLAEKIYGEMLAANCVL-----NKVNVANFAR---------CLCGVG 436
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K DKA L+ M G +P + Y +I L
Sbjct: 437 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 467
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA +D M G P+ TY+IL EA + + K +G+ PDV
Sbjct: 540 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 599
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY+ ++DG CK R+ E E +E + + V PN T+ +N++I
Sbjct: 600 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN------------------TVVYNHLI 641
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+A C G++ AL L M G P+ Y +LIK +
Sbjct: 642 RAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS 680
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 39/167 (23%)
Query: 2 YC---NKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKN 44
YC ++ + A V + + G P+ TT IL EA++++
Sbjct: 187 YCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--- 243
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
G+ PDVY +T ++ FCK G+ E ++L ++ E GV PNVV
Sbjct: 244 -GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV----------------- 285
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
TFN VI L G+ D+A + M E G P+ Y L+K L +
Sbjct: 286 -TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTR 331
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y+F + + EA ++ ++ G+ P+V T+ V+DG GR +E +
Sbjct: 250 YLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEK 309
Query: 77 AIERGVTPNVVT-------LIHLHNVIDI----------GHIPRTITFNNVIQALCGVGK 119
+ERG+ P ++T L + D G P I +NN+I + G
Sbjct: 310 MVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGS 369
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA+ + LM G + + Y+TLIK
Sbjct: 370 LNKAIEIKDLMVSKGLSLTSSTYNTLIK 397
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++ + M G PN TYT L EA + ++ +GL+P+
Sbjct: 644 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 703
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ YTA++DG+ K+G+ +V LL E + V PN +T + IG R
Sbjct: 704 VFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITY-----TVMIGGYARD------ 752
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + +A LL M E G +P Y I
Sbjct: 753 -------GNVTEASRLLNEMREKGIVPDSITYKEFI 781
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+ N G D T A++ G C+ G+ +E + E + RG
Sbjct: 477 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC----------- 525
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+D +++N +I CG K+D+A + L M + G P Y LI
Sbjct: 526 -VMD------RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 571
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 28/149 (18%)
Query: 14 VIDYMFDNGYHPNVTTY-----TILEAYEMLMNVK------NDGLKPDVYTYTAVMDGFC 62
V+ M G+ PNV Y + +EA + ++ + GL TY ++ G+C
Sbjct: 341 VLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC 400
Query: 63 KVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVID-----IGHI------PRTI 105
K G+++ LL E + G N V+ L+ H + D +G + P
Sbjct: 401 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 460
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+I LC GK KAL L F G
Sbjct: 461 LLTTLISGLCKHGKHSKALELWFQFLNKG 489
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 87/215 (40%), Gaps = 69/215 (32%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-- 47
C CN N EA + + GY PNV TYT L EA + + ++ G
Sbjct: 135 CLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP 194
Query: 48 ---------------------------------------KPDVYTYTAVMDGFCKVGRSN 68
KP V TY+ ++DG CKVGR +
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254
Query: 69 EVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVI 111
E EL E +G+ P+V+ TLIH ++D G P +TF+ +I
Sbjct: 255 EAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLI 314
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC GK+ +A LL +M + G +P+ Y++LI
Sbjct: 315 DTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLI 349
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P V TY+I+ EA E+ +K G+ PDV +Y+ ++ GFC G+ ++ L
Sbjct: 235 PGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHL 294
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
+E +++GV P++VT L + +I G +P IT+N++I C
Sbjct: 295 FDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VG ++ A L M G P Y TLI
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLI 384
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +++ + D M D G P++ T+++L EA ++L + G+ P+
Sbjct: 282 FCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPN 341
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY +++DGFC VG N EL +G+ P+ I++ +
Sbjct: 342 LITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPD------------------EISYTTL 383
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I C K+ +A+ L M + GK P+ T Y TL+K L Q+
Sbjct: 384 INGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQK 425
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+K+++ M G PN+ TY L A E+ +++ + GL+PD
Sbjct: 318 CKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDE 377
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YT +++G+CK + E M L NE ++ G +PNV T+ ++
Sbjct: 378 ISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVT------------------TYGTLL 419
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ L GK+ A L +M +G + +Y + L
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGL 457
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 29/154 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
K +A+K+ M G N Y I EA E+ +K+ K ++
Sbjct: 424 QKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIE 483
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
Y+ ++DG CK G+ EL + + G+ P+VVT +N +I
Sbjct: 484 NYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVT------------------YNIMIH 525
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C VG++D A +L M E+G P Y+TL+
Sbjct: 526 GFCKVGQVDNANILFEKMEENGCTPDIIAYNTLL 559
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + FEA ++ + + + N+ Y+ L A+E+ + +GL+PDV
Sbjct: 458 CKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDV 517
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ GFCKVG+ + L + E G TP++ I +N ++
Sbjct: 518 VTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDI------------------IAYNTLL 559
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C K+++ + LL M + P+
Sbjct: 560 CGFCEGNKLEEVIKLLHKMVQKDVSPN 586
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P + ++ ++ G K+ +++ L NE G++P++ TL L N
Sbjct: 89 PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAA 148
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G+IP +T+ +I+ LC +I +A L M + G P+ Y TLIK L Q
Sbjct: 149 MAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQ 208
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ + + G P+V TY I+ A + ++ +G PD+
Sbjct: 493 CKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDI 552
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
Y ++ GFC+ + EV++LL++ +++ V+PN +
Sbjct: 553 IAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAAS 589
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M NG PN TY + EA L + +DG++PDV
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P Y T+I
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL +A + ++ GL PD
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY V+ CK GR + M + I+ ++P N+V +LIH +
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P+ Y TLI
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLI 521
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 31/146 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDG 60
V+ M G PNV +Y IL EA E+L + +DG PDV +YT V++G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
F K G ++ +E ++RG+ PNVVT +N++I ALC +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVT------------------YNSIIAALCKAQAM 250
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
DKA+ +L M ++G +P+ Y++++
Sbjct: 251 DKAMEVLTSMVKNGVMPNCRTYNSIV 276
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G PN+ TY+ L EA ++L ++ + G+KPD
Sbjct: 489 HCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY +++G+CK+ R + + L E GV+P+++T
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M D P Y L +A E+++ + + G+ D
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+ +++D CK GR E +L + + GV PN++ TLI L +
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLAS 539
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +G P +T+N +I C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 540 MVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 28/121 (23%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY IL + L NV G + D +T ++ G C R+++ M++
Sbjct: 89 PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + +G IP ++N +++ LC + +AL LL +M +
Sbjct: 149 V-----------------LRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 134 G 134
G
Sbjct: 192 G 192
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +F EA++V M + G PN+ TY +L EA+++ ++N GL PD
Sbjct: 480 YCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 539
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYT T+++ G C G+ + ++L +E +RG+ PNVV T+ +
Sbjct: 540 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV------------------TYTAM 581
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ ++A L M E G P T+Y +L+ L
Sbjct: 582 ISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 620
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 31/162 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C N+ D EA+ ++ M + G PN ++T L EA + ++ G P
Sbjct: 446 CKLNRKD--EAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVP 503
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
++ TY ++DG+ K G E +L +E RG+ P+V T L
Sbjct: 504 NIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSL----------------- 546
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I C GK+D AL L M + G +P+ Y +I L +
Sbjct: 547 -IHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSK 587
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 64/192 (33%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN--------- 41
C C + A + D M D G P+ TY L EA +ML+N
Sbjct: 339 CNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDL 398
Query: 42 ---------------------------VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
++ GL+ DV+ Y ++ G CK+ R +E LL
Sbjct: 399 NPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLL 458
Query: 75 NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ERGV+PN T++F +I C G +A + M E G
Sbjct: 459 FSMVERGVSPN------------------TMSFTTLIDIYCKEGNFVEAKRVFREMEEKG 500
Query: 135 KIPSRTLYDTLI 146
+P+ Y+ LI
Sbjct: 501 NVPNIITYNVLI 512
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D +++ M G NV TYT+L EA + ++ G++ D
Sbjct: 270 YFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD 329
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT----- 104
VY YT+++ C+ G + L +E ++G+ P+ T L H V G +
Sbjct: 330 VYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVN 389
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ FN +I C G +D+AL L +M + G
Sbjct: 390 EMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG 430
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI--------------LEAYEMLMNVKNDGL 47
Y + F EA + ++M G+H + + + L + ++N+ +
Sbjct: 165 YADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLD---V 221
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVID 97
+ VY+ T V+DG CK G +L++E +GV NVVT + L V +
Sbjct: 222 EVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAE 281
Query: 98 I-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G +T+ +I +GKI++A L M E G +Y ++I
Sbjct: 282 ILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSII 337
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C+ + +A VI M G+ P+ +TY+ + A+ + +K GL
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + + NE E G TPNVVT LIH
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ G +P +T++ +I C G+++KA + M +P +Y
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAY----------EMLMNVKNDGLKPD 50
+C +ARK + M + G PNV TYT L AY E+ + ++G P+
Sbjct: 528 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 587
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY+A++DG CK G+ + ++ P+V ++ D P +T+ +
Sbjct: 588 IVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD--MYFKQYDDNSERPNVVTYGAL 645
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C ++++A LL M G P++ +YD LI L
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
DN PNV TY L EA ++L + +G +P+ Y A++DG CKVG+ +
Sbjct: 632 DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLD 691
Query: 69 EVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVI 111
E E+ E E G + T L +++ P + + +I
Sbjct: 692 EAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMI 751
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC VGK D+A L+ +M E G P+ Y +I
Sbjct: 752 DGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 786
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY+++ ++ G +P+V TYTA++D
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GF +G+ +ELL +GV PN VT
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVT 816
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EARK++D M G PN Y L EA E+ + G
Sbjct: 649 FCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 708
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+YTY++++D + KV R + ++L++ +E PNVV + + +
Sbjct: 709 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 768
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+ +I +GKI+ L LL M G P+ Y LI
Sbjct: 769 MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 821
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL 92
E L V+ + PD YT ++ G C+ E M+ LN PNVVT L
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 93 HNVIDIGHIPRTIT-------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
N +G R + FN+++ A C G A LL M + G +P
Sbjct: 348 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 407
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 408 VVYNILI 414
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 65/212 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C K D EA K++ M + G PNV TYT I E+L + + G+ P
Sbjct: 755 CKVGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAP 812
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE--------------------------------- 76
+ TY ++D CK G + LL E
Sbjct: 813 NYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDE 872
Query: 77 ----------AIERGVTPNVVTLIHLHNVI----DIGHIPRTI-----TFNNVIQALCGV 117
++ R + N++ L + ++ T+ T+N++I++LC
Sbjct: 873 IGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLA 932
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K++ A L M + G IP + +LIK L
Sbjct: 933 NKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M PNV TY+ L +L + +G P
Sbjct: 313 CEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSP 372
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHL- 92
+ +++ +C G + +LL + ++ G P V L+ L
Sbjct: 373 KIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLA 432
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ G + I ++ + LC GK +KA ++ M G IP + Y ++
Sbjct: 433 EKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNY 492
Query: 149 L 149
L
Sbjct: 493 L 493
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKP 49
C+ +A ++I M + G PN+ T+ T++ Y L NV N GL P
Sbjct: 430 CFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIP 489
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------- 101
D+ T+T++++G C + ++ + NE E GV PN T + +H + GH+
Sbjct: 490 DIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLL 549
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +FN I + C + K+DKA + M G +P Y++LIK L
Sbjct: 550 NKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKAL 606
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + A+ V+ + ++G P++ T+T L +A++ + G++P+
Sbjct: 466 YSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPN 525
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNV-------- 95
+TY +M C G N+ ++LLN+ + G+TP+ +++ + V
Sbjct: 526 AHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFN 585
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ +G +P T+N++I+ALC +ID+A +L LM G
Sbjct: 586 AMLRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSG 626
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHN 94
DGL V +Y V+D F K G ++ E++ E E+GV PN+VT L ++HN
Sbjct: 415 DGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHN 474
Query: 95 -------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G IP ITF ++I LC ++D A M E G P+ Y+ L+
Sbjct: 475 AKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMH 534
Query: 148 KL 149
L
Sbjct: 535 AL 536
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 14/88 (15%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G P+ TY L EA ++ ++ G++P+V+TYT ++DGFC GR
Sbjct: 202 MPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGR 261
Query: 67 SNEVMELLNEAIERGVTPNVV---TLIH 91
+ + + + E+GV+PN TL+H
Sbjct: 262 PEDAVHVFDTMKEKGVSPNEASYRTLVH 289
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +V M G P+ Y L AY + DG +PD +TY ++
Sbjct: 160 AHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVH 219
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C+ G +E + L+ + G+ PNV T+ ++ C G+
Sbjct: 220 GVCQRGIIDEALRLVRQMEGAGIRPNV------------------FTYTMLVDGFCNAGR 261
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ A+ + M E G P+ Y TL+
Sbjct: 262 PEDAVHVFDTMKEKGVSPNEASYRTLV 288
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
+A+ V+ M + G P+V TY L A E+L +++N G KP+VY+YT +
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDI----------GH 100
+DGFCK+G+ +E +LNE G+ PN V L H + + G
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TFN++I LC V +I AL LL M G + + Y+TLI
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA V++ M +G PN + L EA E+ + G KPD
Sbjct: 434 FCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 493
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHIPRT----- 104
VYT+ +++ G C+V + LL + I GV N VT L N + G I
Sbjct: 494 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 553
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IT+N++I+ LC G++DKA L M G PS + LI L
Sbjct: 554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGL 609
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 25/170 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N+ A ++ M +G PN Y L EA ++L + G PD
Sbjct: 227 FCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPD 286
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI-------- 101
T+ V+ G CK R NE +++N + RG P+ +T +L N + IG +
Sbjct: 287 AETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFY 346
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLF-LMYEHGKIPSRTLYDTLI 146
P + FN +I G++D A +L ++ +G +P Y++LI
Sbjct: 347 RIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR + + M +G+ P+ + IL EA E + G PD+
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 634
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+ ++++G C+ GR + + + + G+ P+ T+TFN ++
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD------------------TVTFNTLM 676
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G + A LLL E G +P+ + L++ + Q
Sbjct: 677 SWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQ 717
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH- 91
Y+ML + + P ++T+ VM FC V + + LL + + G PN V TLIH
Sbjct: 206 YDML----SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHS 261
Query: 92 -------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
L + +G +P TFN+VI LC +I++A ++ M G P
Sbjct: 262 LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPD 321
Query: 139 RTLYDTLIKKL 149
Y L+ L
Sbjct: 322 DITYGYLMNGL 332
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P TF V++A C V +ID AL LL M +HG +P+ +Y TLI L +
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSK 264
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C+ + +A VI M G+ P+ +TY+ + A+ + +K GL
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + + NE E G TPNVVT LIH
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ G +P +T++ +I C G+++KA + M +P +Y
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAY----------EMLMNVKNDGLKPD 50
+C +ARK + M + G PNV TYT L AY E+ + ++G P+
Sbjct: 528 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 587
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY+A++DG CK G+ + ++ P+V ++ D P +T+ +
Sbjct: 588 IVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD--MYFKQYDDNSERPNVVTYGAL 645
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C ++++A LL M G P++ +YD LI L
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
DN PNV TY L EA ++L + +G +P+ Y A++DG CKVG+ +
Sbjct: 632 DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLD 691
Query: 69 EVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVI 111
E E+ E E G + T L +++ P + + +I
Sbjct: 692 EAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMI 751
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC VGK D+A L+ +M E G P+ Y +I
Sbjct: 752 DGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 786
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY+++ ++ G +P+V TYTA++D
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GF +G+ +ELL +GV PN VT
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVT 816
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EARK++D M G PN Y L EA E+ + G
Sbjct: 649 FCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 708
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+YTY++++D + KV R + ++L++ +E PNVV + + +
Sbjct: 709 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 768
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+ +I +GKI+ L LL M G P+ Y LI
Sbjct: 769 MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 821
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL 92
E L V+ + PD YT ++ G C+ E M+ LN PNVVT L
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 93 HNVIDIGHIPRTIT-------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
N +G R + FN+++ A C G A LL M + G +P
Sbjct: 348 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 407
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 408 VVYNILI 414
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 65/212 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C K D EA K++ M + G PNV TYT I E+L + + G+ P
Sbjct: 755 CKVGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAP 812
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE--------------------------------- 76
+ TY ++D CK G + LL E
Sbjct: 813 NYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDE 872
Query: 77 ----------AIERGVTPNVVTLIHLHNVI----DIGHIPRTI-----TFNNVIQALCGV 117
++ R + N++ L + ++ T+ T+N++I++LC
Sbjct: 873 IGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLA 932
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K++ A L M + G IP + +LIK L
Sbjct: 933 NKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M PNV TY+ L +L + +G P
Sbjct: 313 CEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSP 372
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHL- 92
+ +++ +C G + +LL + ++ G P V L+ L
Sbjct: 373 KIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLA 432
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ G + I ++ + LC GK +KA ++ M G IP + Y ++
Sbjct: 433 EKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNY 492
Query: 149 L 149
L
Sbjct: 493 L 493
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 36/182 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA +V+D +P+V TYTIL +A ++L ++ G KPDV
Sbjct: 220 CDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDV 279
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G CK GR +E ++ LN G PNV+T HN+I
Sbjct: 280 VTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVIT----HNIILRSMCSTGRWMDAER 335
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
G P +TFN +I LC + +A+ +L M +HG +P+ Y+ L+
Sbjct: 336 LLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFC 395
Query: 151 QQ 152
Q+
Sbjct: 396 QE 397
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + ++ M G +P++ TY L A E+L + + G P
Sbjct: 394 FCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPV 453
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG KVG++ ELL E +G+ P+++T L H
Sbjct: 454 LITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFH 513
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ + P +T+N ++ LC + +A+ L M E G P++ Y LI+ +
Sbjct: 514 DMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M G P+V T+ IL A ++L + G P+
Sbjct: 325 CSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNS 384
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y ++ GFC+ + + +E L + RG P++VT + L+
Sbjct: 385 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQ 444
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P IT+N VI L VGK + A LL M G P Y TL++ L
Sbjct: 445 LSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGL 499
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C +A ++++ + ++G P+V TY +L E + L ++ + PDV T
Sbjct: 152 FCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVT 211
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
Y ++ C G+ E ME+L+ ++R P+V+T LI L +
Sbjct: 212 YNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMR 271
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+N +I +C G++D+A+ L M +G P+ ++ +++ +
Sbjct: 272 KKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSM 324
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E + L + G PDV T+++ GFC+ G++ + ++ G P+V+T +
Sbjct: 125 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVIT----Y 180
Query: 94 NVIDIGH------------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
NV+ G+ P +T+N ++++LC GK+ +A+ +L +
Sbjct: 181 NVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQREC 240
Query: 136 IPSRTLYDTLIK 147
P Y LI+
Sbjct: 241 YPDVITYTILIE 252
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C DF A+KV + M N TY ++ EA+ + + GL PD
Sbjct: 255 HCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPD 314
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TY A+M+G CK GR E LL+E G+ PNVV TL+ L+
Sbjct: 315 AFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILN 374
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I G P I ++N+I+ LC +G++ +A LL M + G P Y L++
Sbjct: 375 EMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQ 428
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C A K+++ M G+ P+ TY L A+E+L ++N G+ P+
Sbjct: 396 CKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNA 455
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLI--------------HLHN 94
YTY +++G C+ G S E LL E I G+ PN LI L N
Sbjct: 456 YTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLEN 515
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +P +N++I+ L VG+I++A + + G +P Y LI
Sbjct: 516 MTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLI 567
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ND + ++ M +G P+ Y I+ A+ +L V+ +GL PD
Sbjct: 605 YFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPD 664
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVID 97
++ Y++++ G CK+ + + LL+E + G+ P +V L NV D
Sbjct: 665 LHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFD 724
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
G +P +T+ +I C G I A L M + G P +Y+ L
Sbjct: 725 SILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVL 776
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 28 TTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
T I EA E V+ GL PD +TY+ ++ G+CK + +LL + + G+ PN
Sbjct: 537 TVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNAD 596
Query: 88 TLIH-----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
T L +++ G P + VI+ L ++ A ++L +
Sbjct: 597 TYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEV 656
Query: 131 YEHGKIPSRTLYDTLIKKL 149
++G +P +Y +LI L
Sbjct: 657 EKNGLVPDLHIYSSLISGL 675
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
++ + H T + +A ++L + N GLKP+ TYT +++G+ K +V +L
Sbjct: 560 EFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQ 619
Query: 76 EAIERGVTPN-----------------VVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ G P+ V + L V G +P ++++I LC +
Sbjct: 620 SMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMA 679
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++KA+ LL M + G P Y+ LI
Sbjct: 680 DMEKAVGLLDEMAKEGLEPGIVCYNALI 707
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 53/188 (28%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C D AR V D + G PN TYT I +A+++ ++ + G+ PD
Sbjct: 710 FCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPD 769
Query: 51 VYTY----------------------------------TAVMDGFCKVGRSNEVMELLNE 76
+ Y + ++ GFCK GR E +LL+
Sbjct: 770 AFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSLFSTLVRGFCKRGRLQETEKLLHV 829
Query: 77 AIERGVTPNVVTLIHLHNVI-DIGHIPRTI----TFNNVIQALCGVGKIDKALLLLFLMY 131
++R + PN T + NVI + G + F + Q D+ LL M
Sbjct: 830 MMDREIVPNAQT---VENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFSLLFTDMI 886
Query: 132 EHGKIPSR 139
G IP +
Sbjct: 887 NKGLIPPK 894
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G+ PDVYTY+ ++ CK + ++ E R N VT +
Sbjct: 240 GIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 299
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P T+ ++ LC G++ +A LL M G P+ +Y TL+
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLV 357
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N F+A ++ M + G+ P+V Y + +A E+ ++ DG++ D
Sbjct: 90 FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRAD 149
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHI-------- 101
TY +++ G C GR ++ L+ + + R + PNV+T + +V + G
Sbjct: 150 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 209
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+N++I LC G++D+A +L LM G +P Y+TLI
Sbjct: 210 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLI 262
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 29/133 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ + M P+V TY L EA +ML + G PD
Sbjct: 195 FVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPD 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY +++GFCK R +E +L E +RG+ + TIT+N +
Sbjct: 255 VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD------------------TITYNTI 296
Query: 111 IQALCGVGKIDKA 123
IQ G+ D A
Sbjct: 297 IQGYFQAGRPDAA 309
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 31/166 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA++++D M G P+V TY L E ++ + GL D TY ++
Sbjct: 238 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 297
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI------------ 105
G+ + GR + E+ + R PN+ T I L+ + + + +
Sbjct: 298 QGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 354
Query: 106 ----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
T+N VI +C +G ++ A L + G P Y T+I
Sbjct: 355 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMIS 400
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 29/125 (23%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PN+ TY+IL +A + N++ ++ D+ TY V+ G CK+G + +
Sbjct: 319 RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWD 378
Query: 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
L +G+ P+VV ++ +I C + DK+ LL M E
Sbjct: 379 LFRSLSCKGLKPDVV------------------SYTTMISGFCRKRQWDKSDLLYRKMQE 420
Query: 133 HGKIP 137
G +P
Sbjct: 421 DGLLP 425
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------V 95
G+ D+Y+Y V++ C+ R + ++ + ++ G P+VVT+ L N
Sbjct: 40 GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 99
Query: 96 IDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
ID+ G P + +N +I C +G ++ A+ L M G Y++L+
Sbjct: 100 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 159
Query: 149 L 149
L
Sbjct: 160 L 160
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A ++++ M + P V TY + EAY + K+ G++ +
Sbjct: 474 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELN 533
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V Y++++DGF KVGR +E +L E +++G+TPNV T L+
Sbjct: 534 VVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQ 593
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ P T T++ +I LC V K +KA + M + G +P+ Y T+I L
Sbjct: 594 SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 649
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + + R + + + G+ P+V +Y+IL E + +K G
Sbjct: 403 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL 462
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR------ 103
D Y AV+DGFCK G+ ++ E+L E E+ V P V T + V + I R
Sbjct: 463 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI--VDGLAKIDRLDEAYM 520
Query: 104 -------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L+L M + G P+ +++L+ L
Sbjct: 521 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 579
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M G PNV T+ L EA ++K P+ YTY+ ++
Sbjct: 552 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILI 611
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G C+V + N+ + ++G+ PNVVT + +I L VG
Sbjct: 612 NGLCRVQKYNKAFVFWQDMQKQGLVPNVVT------------------YTTMISGLAKVG 653
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I A L +G IP ++ LI+ +
Sbjct: 654 NITDAYSLFERFKANGGIPDAASFNALIEGM 684
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K EA + + M + PN +TY I+ EAY +L +++ L P
Sbjct: 229 CLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFP 287
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
++ T ++D CK + E ++ A +RG P+ V T+ +
Sbjct: 288 NLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCV------------------TYCS 329
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I L G++D+A L M + G + +Y +LI+
Sbjct: 330 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 369
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 27/176 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ + A K + G P+ +YT + EA E+ ++ + P
Sbjct: 124 CFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVP 183
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLH 93
Y Y ++ G+ GR + +LL ERG P+VV+ + L
Sbjct: 184 CAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF 243
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+ P + T+N +I LC G++++A +L M P+ + ++ +L
Sbjct: 244 EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRL 299
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE-AIERGVTPNVVTLIHLH 93
A + +K GLKPD +YT+++ CK GR E EL + ER V
Sbjct: 134 ACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSV----------- 182
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +N +I G+ + A LL + E G IPS +++++ L ++
Sbjct: 183 --------PCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKK 233
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M + GY V +T L +A ++ VK L+PD+ Y +D
Sbjct: 64 ALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCID 123
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F K G + + +E +G+ P+ +++ ++I LC G+
Sbjct: 124 CFGKAGNVDMACKFFHELKAQGLKPD------------------DVSYTSMIWVLCKAGR 165
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +A L M +P Y+T+I
Sbjct: 166 LGEAEELFAQMEAERSVPCAYAYNTMI 192
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K+ + G +P+ TY L EAY + + + G +
Sbjct: 300 CKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANP 359
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+++ F GR + ++ E I RG P++ L N +
Sbjct: 360 VVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLL------------------NTYM 401
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G+++K ++ + +G +P Y LI L +
Sbjct: 402 DCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 441
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A V+ M PN YT++ EA E+ + DG+ P
Sbjct: 326 FCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPS 385
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVT---LIH-------------- 91
TY V++ CK+ + +E +ELL E R + P++VT +IH
Sbjct: 386 TVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDL 445
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L +ID G IP T+ ++IQ L G GK+ +A+ LL M + G P Y TL++ L
Sbjct: 446 LAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQIL 503
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV------ 95
PD TYTA++DG K G + +E + + P ++T L H V
Sbjct: 104 PDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDV 163
Query: 96 ----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I GH P I ++++I L G++D+A L+ LM G P+ Y +++ L
Sbjct: 164 FEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGL 221
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P + TYT+L A ++ + G KPD+ Y++++DG K GR +E +L
Sbjct: 139 PTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKL 198
Query: 74 LNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTI----------------TFNNVIQALCG 116
++ I RG P V + + G I + T++ ++ G
Sbjct: 199 VDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIG 258
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+GK+++A ++ M + P Y I+ L
Sbjct: 259 MGKVEEAFAVMEEMADRDCAPDTISYTMFIEAL 291
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EARK++D M G P YT I EA + + ++ L+P V TY+ ++
Sbjct: 194 EARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIV 253
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G+ +G+ E ++ E +R P+ TI++ I+AL +G
Sbjct: 254 TGYIGMGKVEEAFAVMEEMADRDCAPD------------------TISYTMFIEALYSIG 295
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++A + M E G P Y +I
Sbjct: 296 RREEAEKVFETMVEKGCKPDMHTYGIII 323
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 30/177 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + EA K I M P V TY+ + EA+ ++ + + P
Sbjct: 222 CKCGR--IQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAP 279
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLH 93
D +YT ++ +GR E ++ +E+G P++ T H+
Sbjct: 280 DTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVL 339
Query: 94 NVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D + P + ++ ++++AL L + + G +PS Y+T+I L
Sbjct: 340 RLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINAL 396
Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M DNG P+ TYT L A E+L + G+ PD +TY ++ C+
Sbjct: 449 MIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCR-SD 507
Query: 67 SNEVMELLNEAIERGVTPNVVTL 89
+ +LL E + G TPN T
Sbjct: 508 VDAAWDLLQEMMRNGHTPNEFTF 530
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+ D + +++ M G PN+ TYTI EA ++ +++DG PDV T
Sbjct: 242 RRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVT 301
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----HNVIDIGHI-------- 101
YT ++D C G+ ++ MEL + P+ VT I + + D+G +
Sbjct: 302 YTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEME 361
Query: 102 -----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ITF ++ ALC G ID+A LL +M + G +P+ Y+TLI L
Sbjct: 362 ADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGL 414
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++D M G PN+ TY L +A ++ N++ G+ P
Sbjct: 380 CKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTA 439
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YTY +D + K GRS++ +E + RG+ PN+V L+++ ++G +
Sbjct: 440 YTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNR 499
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++T+N +++ G++D+A+ LL M E+ P + ++LI L
Sbjct: 500 LKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTL 554
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 28/161 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G+H N +Y L EA EM + +GLKP + T++A+M K
Sbjct: 185 MREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRD 244
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNN 109
+ V LL E G+ PN+ T V+ D G P +T+
Sbjct: 245 TETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTV 304
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+I ALC GK+D A+ L M P R Y T++ K
Sbjct: 305 LIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFS 345
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY EA +++ M +N P++ L EA++M +K+ L P
Sbjct: 518 CYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAP 577
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K G+ MEL G PN TITFN
Sbjct: 578 TVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPN------------------TITFNT 619
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ LC ++D AL +L+ M +P ++T+I L
Sbjct: 620 ILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGL 659
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA + +K++GL PD TY +M + K G+ +E +ELL++ E P+++ + L
Sbjct: 492 EAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLI 551
Query: 94 NVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N + D+ P +T+N +I L G++ +A+ L M +G
Sbjct: 552 NTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCP 611
Query: 137 PSRTLYDTLI 146
P+ ++T++
Sbjct: 612 PNTITFNTIL 621
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKV-IDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C A+ V I + + G P + +Y L A+ + +KN G PD
Sbjct: 765 CKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPD 824
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V+TY ++D K G+ NE+ EL + I PN +T L +
Sbjct: 825 VFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFY 884
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ P T+ ++ L G++++A L M ++G P+ +Y+ LI
Sbjct: 885 DLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILI 937
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 31/175 (17%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
N+ FE + + M + PN T+ I+ +A ++ ++ + P TY
Sbjct: 842 NELFE---LYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTY 898
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPN----------------VVTLIHL-HNVID 97
++DG K GR E EL E ++ G PN V T L ++
Sbjct: 899 GPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVR 958
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P ++ +++ LC G++D AL + + G Y+ +I L +
Sbjct: 959 EGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRS 1013
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + D M G +P++ TY L +A ++ ++ GL+P+V+TY A++
Sbjct: 1018 EALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALI 1077
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
G+ G S+ + + G +PN T L N
Sbjct: 1078 RGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQLPN 1113
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 63/199 (31%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+++ + M D G PN Y IL A E+ + +G++PD+ +YT+++
Sbjct: 913 EAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLV 972
Query: 59 DGFCKVGRSN-----------------------------------EVMELLNEAIERGVT 83
C+ GR + E + L +E RG+
Sbjct: 973 GCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGIN 1032
Query: 84 PNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
P++ T L + IG P T+N +I+ G D A +
Sbjct: 1033 PDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAV 1092
Query: 127 LFLMYEHGKIPSRTLYDTL 145
M G P+ + L
Sbjct: 1093 YKRMMVGGCSPNTGTFAQL 1111
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 28/159 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G+ P+V TY + EA ++L N+ +DGL PD TYT++++GF K G
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGH 545
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIHLH---NVIDIGHI-----------PRTITFNN 109
+ E+ NE + +GV P+VVT LIH H ++D+ + IT+N
Sbjct: 546 LRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNA 605
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+I LC ++D+A M E G +P++ Y LI +
Sbjct: 606 IINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINE 644
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A +++ M + G +PN TY +L +A ++ + N GL
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
YTY +++GFC+ G E +L+ E + R P + T +
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFS 344
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ P ++FN+++ C G I +A LL + +P+ Y+TLI L
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGL 400
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 28/164 (17%)
Query: 14 VIDYMFDNGYHPNVTT----YTILEAYEMLMNVKND-------GLKPDVYTYTAVMDGFC 62
V D M NG P+V +L +L KN G+KP V TY ++D +C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTI 105
K GR ++ +ELL+E ERG PN VT L N +++ G
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I C G +A L+ M P+ + Y+TL+ L
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGL 330
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA + D + P V TY L A + + + GL PD
Sbjct: 365 YCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPD 424
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-----------------VVTLIHLH 93
++TYT +++G K+G + NE + +G+ P+ V
Sbjct: 425 IFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQE 484
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P IT+N + ALC G ++A LL M G IP Y ++I
Sbjct: 485 EMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSII 537
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK------------P 49
+C K F EA +++ M + P ++TY L Y + V+ G++ P
Sbjct: 295 FCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTL-MYGLCKWVQVTGVRLRFSDMLKSKFTP 353
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+ ++ +++ G+C+ G +E L +E R + P V IT+N
Sbjct: 354 DIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTV------------------ITYNT 395
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC G +D AL L M + G P Y L+
Sbjct: 396 LIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL----EAYEML-------MNVKNDGLKPDVYTYTAVM 58
+AR+V + M G P+V TYT+L A +ML + + +V TY A++
Sbjct: 548 KAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAII 607
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G C R +E + +E E+G+ PN ++ +I C +G
Sbjct: 608 NGLCMTRRMDEAYKYFDEMEEKGILPN------------------KFSYTILINESCNMG 649
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++AL L M + P + +K L +
Sbjct: 650 YWEEALRLYREMLDRKIQPDSFTHSVFLKNLHR 682
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P +T+N ++ + C G++D+AL LL M E G P+ Y+ L+ L ++
Sbjct: 208 QFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKK 263
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 28/159 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G+ P+V TY + EA ++L N+ +DGL PD TYT++++GF K G
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGH 545
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIHLH---NVIDIGHI-----------PRTITFNN 109
+ E+ NE + +GV P+VVT LIH H ++D+ + IT+N
Sbjct: 546 LRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNA 605
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+I LC ++D+A M E G +P++ Y LI +
Sbjct: 606 IINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINE 644
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A +++ M + G +PN TY +L +A ++ + N GL
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
YTY +++GFC+ G E +L+ E + R P + T +
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFS 344
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ P ++FN+++ C G I +A LL + +P+ Y+TLI L
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGL 400
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 28/164 (17%)
Query: 14 VIDYMFDNGYHPNVTT----YTILEAYEMLMNVKND-------GLKPDVYTYTAVMDGFC 62
V D M NG P+V +L +L KN G+KP V TY ++D +C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTI 105
K GR ++ +ELL+E ERG PN VT L N +++ G
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I C G +A L+ M P+ + Y+TL+ L
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGL 330
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA + D + P V TY L A + + + GL PD
Sbjct: 365 YCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPD 424
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-----------------VVTLIHLH 93
++TYT +++G K+G + NE + +G+ P+ V
Sbjct: 425 IFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQE 484
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P IT+N + ALC G ++A LL M G IP Y ++I
Sbjct: 485 EMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSII 537
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK------------P 49
+C K F EA +++ M + P ++TY L Y + V+ G++ P
Sbjct: 295 FCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTL-MYGLCKWVQVTGVRLRFSDMLKSKFTP 353
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+ ++ +++ G+C+ G +E L +E R + P V IT+N
Sbjct: 354 DIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTV------------------ITYNT 395
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC G +D AL L M + G P Y L+
Sbjct: 396 LIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL----EAYEML-------MNVKNDGLKPDVYTYTAVM 58
+AR+V + M G P+V TYT+L A +ML + + +V TY A++
Sbjct: 548 KAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAII 607
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G C R +E + +E E+G+ PN ++ +I C +G
Sbjct: 608 NGLCMTRRMDEAYKYFDEMEEKGILPN------------------KFSYTILINESCNMG 649
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++AL L M + P + +K L +
Sbjct: 650 YWEEALRLYREMLDRKIQPDSFTHSVFLKNLHR 682
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P +T+N ++ + C G++D+AL LL M E G P+ Y+ L+ L ++
Sbjct: 208 QFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKK 263
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K+ M ++ P V TYT+L EA + +K G +P+V
Sbjct: 275 CEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNV 334
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI 98
+TYT ++DG CK + +E ++L+E E+G+ P+VVT L ++D+
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL 394
Query: 99 GHI----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T T+N +I LC K+ KA+ LL M E PS Y++LI
Sbjct: 395 MESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLI 446
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + G HP+ TYT L AYE+ + + G + +
Sbjct: 204 YCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRN 263
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV----------------VTLIHLHN 94
+YT ++ G C+ GR NE ++L + E P V V ++L N
Sbjct: 264 EVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFN 323
Query: 95 VI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P T+ +I LC K+D+A +L M E G IPS Y+ LI
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A +++ M + P++ TY L AY +L + +GL PD
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+ +D CK GR E L + +GV N + + +I
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN------------------EVIYTALI 516
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C VGKID A LL M +P+ Y+ LI+ L ++
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + D + G N YT L AY +L + ND P+
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
YTY +++G CK + E L+ + + GV P VVT L ++
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G+ P T+ + A G +++ ++ M E G +P Y LI
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLI 656
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 24/168 (14%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDVYTYTA 56
F A KV ++M GY P+V TYT L AY +++ + +G+ PD+ TYT
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHIPRTITFNNVIQALC 115
++DG+ ++G ++ + L ++ G P++ + I + N+ + T + I ++
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG-IDSVS 713
Query: 116 GVGKID-----------KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V +D AL L M EHG ++Y LI QQ
Sbjct: 714 NVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQ 761
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------H 93
N+ + P++YT+ A+++G+CK+G E ++ ++ G+ P+ T L
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246
Query: 94 NVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N ++ G +++ N+I LC G+I++AL L M E P+ Y LI
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306
Query: 147 KKLD 150
L
Sbjct: 307 YALS 310
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A ++ + G DV Y A++ GFC+ R E L++ ERG++P+
Sbjct: 732 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSE-------- 783
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
DI +N+++ C +G +A+ L+ M E+G +P Y L+
Sbjct: 784 --DI--------YNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLV 825
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K+ + M ++G +V+ Y L EA ++ ++K G+ P Y +++D
Sbjct: 732 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLD 791
Query: 60 GFCKVGRSNEVMELLNEAIERGVTP 84
CK+G E + L++ +E G+ P
Sbjct: 792 CCCKLGVYAEAVRLVDAMVENGLLP 816
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V++ M NG P+ TY + EA L +++DG++P+V
Sbjct: 247 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNV 306
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY+++M+ CK GRS E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 307 VTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDL 366
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN +I A K+D+A+L+ M +HG P+ Y T+I L
Sbjct: 367 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 36/158 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G P++ TY L EA ++L ++ + G+KPD
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG--HIPRTI--- 105
+ TY +++G+C+V R ++ + L E + GV+PN++T +N+I G H RT
Sbjct: 551 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT----YNIILQGLFHTRRTAAAK 606
Query: 106 ----------------TFNNVIQALCGVGKIDKALLLL 127
T+N ++ LC D+AL +
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 644
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG P+ + IL +A + ++ GL P+
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V Y V+D CK G ++ M + I+ G+TPN++ +LIH +
Sbjct: 411 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELIL 470
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P Y+TLI
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 42/183 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA + M +G PNV TY+ L EA ++ ++ GL+PD
Sbjct: 281 YCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
+ TY ++ G+ G E+ LL+ + G+ P+ H+V +I
Sbjct: 341 IATYRTLLQGYATKGALVEMHALLDLMVRNGIQPD-------HHVFNILICAYAKQEKVD 393
Query: 99 ------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P + + VI LC G +D A+L M + G P+ +Y +LI
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453
Query: 147 KKL 149
L
Sbjct: 454 HGL 456
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
Y + +A V M +G +PNV Y ++ +A + ++GL P+
Sbjct: 386 YAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 445
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN------------- 94
+ YT+++ G C + ++ EL+ E ++RG+ N + ++I H
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 505
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ IG P IT+N +I C GK+D+A LL M G P Y TLI
Sbjct: 506 LMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 558
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE M+ + + G PDV +Y V++GF K G S++ +E ++RG+ P+VV
Sbjct: 183 LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV----- 237
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I ALC +DKA+ +L M ++G +P Y++++
Sbjct: 238 -------------TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 278
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M D G PN+ YT L +A E+++ + + G+ +
Sbjct: 422 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNT 481
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+ +++D CK GR E +L + + GV P+++T LI L +
Sbjct: 482 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 541
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +T+ +I C V ++D AL L M G P+ Y+ +++ L
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P V TY IL + L NV G + D T+T ++ G C R+++ M++
Sbjct: 90 PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + ++G IP ++NN+++ LC + +AL LL +M +
Sbjct: 150 V-----------------LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192
Query: 134 ---GKIPSRTLYDTLI 146
G P Y+T++
Sbjct: 193 RGGGSPPDVVSYNTVL 208
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A + M +G PN+ TY I+ A E+ +++ G + +
Sbjct: 561 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLE 620
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++ G CK ++E + + +T + L T TFN +
Sbjct: 621 LSTYNIILHGLCKNNLTDEALRMFQNL--------CLTDLQLE----------TRTFNIM 662
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I AL G++D+A L +G +P Y + + L +Q
Sbjct: 663 IGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQ 704
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + + + D + + G P TY L EA E+ + G++P+
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPN 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VIDIGHI-- 101
VYTYT ++DG C VG++ E ++LLN +++ PNVVT + N V D I
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVE 376
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLM 130
P IT+N+++ LC G +D+A LL+LM
Sbjct: 377 LMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLM 413
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ + M +G ++ T+ IL EA +L +K+ GL+ D
Sbjct: 187 FCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEAD 246
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI-- 98
+ YT+++ GFC G + L +E +ERG +P +T L L +I
Sbjct: 247 LIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFE 306
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+ +I LCGVGK +AL LL LM + + P+ Y+ +I KL
Sbjct: 307 FMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKL 362
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/202 (23%), Positives = 74/202 (36%), Gaps = 63/202 (31%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM- 58
A V+ M G+ NV Y IL +A +L ++ + L PDV +Y V+
Sbjct: 126 AHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIR 185
Query: 59 ----------------------------------DGFCKVGRSNEVMELLNEAIERGVTP 84
D FCK G+ +E M LL E +G+
Sbjct: 186 GFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEA 245
Query: 85 NVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+++ L V++ G P IT+N +I+ C +G++ +A +
Sbjct: 246 DLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIF 305
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
M E G P+ Y LI L
Sbjct: 306 EFMMERGVRPNVYTYTGLIDGL 327
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A ++ + M + P+V ++ I+ A +L+ + + GL PD+
Sbjct: 540 CKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDL 599
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+TY+ +++ F K+G +E + ++ I+ G P+
Sbjct: 600 FTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPD 633
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A + D + + ++ T IL +A E+ + N + P+
Sbjct: 435 CKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNS 494
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DGFCK G N LL + + P+V +N ++
Sbjct: 495 DTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSV------------------FDYNCLL 536
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+LC G +D+A L M P ++ +I
Sbjct: 537 SSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMI 571
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKP 49
C + +A ++++ M P+ TY L EA ++L + D P
Sbjct: 363 CKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDP 422
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGH-------- 100
DV ++ A++ G CK R ++ +++ + +E+ G V T I L++ + G
Sbjct: 423 DVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELW 482
Query: 101 --------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P + T+ +I C G ++ A LL M PS Y+ L+ L
Sbjct: 483 KQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSL 539
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ A V+D + + P V TYTIL EA ++L + GL PD+
Sbjct: 193 CNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDM 252
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YTY A++ G CK G EL+ +G P+V++ I L ++ G
Sbjct: 253 YTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAE 312
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T++ +I +LC G+ID+A+ +L +M E P YD LI L ++
Sbjct: 313 MFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKE 370
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 27/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVY 52
C F E+ ++ + + GY P+V T L E +M + +PDV+
Sbjct: 89 CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVF 148
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNV 95
Y AV+ GFCKV + ++LN RG P++VT L L +
Sbjct: 149 AYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQL 208
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ +P IT+ +I+A G I++A+ LL M G +P Y+ +I+ + ++
Sbjct: 209 LLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKE 265
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N+ + E K++ MF G PN TY+IL EA +L + L PD
Sbjct: 297 FLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPD 356
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
Y+Y ++ CK GR + + +++ I G P++V L +
Sbjct: 357 TYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFN 416
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +G P ++N +I AL G +AL ++ M G P Y++LI L
Sbjct: 417 KLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCL 472
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C + A ++DYM NG P++ Y TIL +A E+ ++ G P+V
Sbjct: 368 CKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNV 427
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+Y ++ G + + ++ I +G+ P+ +T LI L +
Sbjct: 428 SSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDD 487
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P I++N V+ LC V +ID A+ + M E G P+ T Y LI+ +
Sbjct: 488 MEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA ++D M +G+ P V +Y I+ +A M + G +P
Sbjct: 471 CLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRP 530
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+ TY +++G G E MEL N R V
Sbjct: 531 NETTYILLIEGIGFAGWRTEAMELANSLFSRDV 563
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+++I +M G PN T+ L +A E+L + +G PD+
Sbjct: 409 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDL 468
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----------------TLIHLHNV 95
+Y+ V+DG K G++ E +ELLN I +G+TPN + +I + +
Sbjct: 469 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDS 528
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I + +N VI +LC + D+A+ M +G +P+ + Y LI+ L
Sbjct: 529 IQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGL 583
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M ++G P+V TYT + EA +L N+ G KP+ +YT V+ G
Sbjct: 349 ELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 408
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C+ R + EL++ I++G PN VT L N I++ G P
Sbjct: 409 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDL 468
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK ++AL LL +M G P+ +Y ++ L ++
Sbjct: 469 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSRE 516
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M G PNV Y T+L EA ++L + + D T+ ++D
Sbjct: 277 ANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVD 336
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIP 102
FC+ G + V+ELL + +E G P+V+T ++ L N+ G P
Sbjct: 337 FFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKP 396
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TI++ V++ LC + A L+ M + G +P+ ++TLI
Sbjct: 397 NTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLI 440
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 25/136 (18%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
++ +E L + G PD+ Y ++DG CK G ++L+ G+ PNVV
Sbjct: 239 MVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVC--- 295
Query: 92 LHNVIDIGHIPRT---------------------ITFNNVIQALCGVGKIDKALLLLFLM 130
+N + G +TFN ++ C G +D+ + LL M
Sbjct: 296 -YNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 354
Query: 131 YEHGKIPSRTLYDTLI 146
EHG IP Y T+I
Sbjct: 355 LEHGCIPDVITYTTVI 370
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+++I +M G PN T+ L +A E+L + +G PD+
Sbjct: 434 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDL 493
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----------------TLIHLHNV 95
+Y+ V+DG K G++ E +ELLN I +G+TPN + +I + +
Sbjct: 494 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDS 553
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I + +N VI +LC + D+A+ M +G +P+ + Y LI+ L
Sbjct: 554 IQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGL 608
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M ++G P+V TYT + EA +L N+ G KP+ +YT V+ G
Sbjct: 374 ELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 433
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C+ R + EL++ I++G PN VT L N I++ G P
Sbjct: 434 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDL 493
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK ++AL LL +M G P+ +Y ++ L ++
Sbjct: 494 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSRE 541
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E E+L + + G +PD+ +Y AV+ G C R ++V EL+ E + G PNV
Sbjct: 196 EGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVA------ 249
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC G ++ L M EHG P +Y T+I
Sbjct: 250 ------------TFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATII 290
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 36/176 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C + + +++ M G PNV T+ L AY E L + G PD+
Sbjct: 224 CMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDL 283
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT------- 104
Y ++DG CK G ++L+ G+ PNVV +N + G
Sbjct: 284 RMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVC----YNTVLKGLCSAERWEEAED 339
Query: 105 --------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+TFN ++ C G +D+ + LL M EHG IP Y T+I
Sbjct: 340 LLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVI 395
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M G PNV Y T+L EA ++L + + D T+ ++D
Sbjct: 302 ANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVD 361
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIP 102
FC+ G + V+ELL + +E G P+V+T ++ L N+ G P
Sbjct: 362 FFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKP 421
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TI++ V++ LC + A L+ M + G +P+ ++TLI
Sbjct: 422 NTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLI 465
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C +A +V++ M NG P+ TY +IL EA L +++DG++P+V
Sbjct: 247 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNV 306
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY+++M+ CK GRS E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 307 VTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDL 366
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN +I A K+D+A+L+ M +HG P+ Y T+I L
Sbjct: 367 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 36/158 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G P++ TY L EA ++L ++ + G+KPD
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG--HIPRTI--- 105
+ TY +++G+C+V R ++ + L E + GV+PN++T +N+I G H RT
Sbjct: 551 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT----YNIILQGLFHTRRTAAAK 606
Query: 106 ----------------TFNNVIQALCGVGKIDKALLLL 127
T+N ++ LC D+AL +
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 644
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG P+ + IL +A + ++ GL P+
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V Y V+D CK G ++ M + I+ G+TPN++ +LIH +
Sbjct: 411 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELIL 470
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P Y+TLI
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 42/183 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA + M +G PNV TY+ L EA ++ ++ GL+PD
Sbjct: 281 YCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
+ TY ++ G+ G E+ LL+ + G+ P+ H+V +I
Sbjct: 341 IATYRTLLQGYATKGALVEMHALLDLMVRNGIQPD-------HHVFNILICAYAKQEKVD 393
Query: 99 ------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P + + VI LC G +D A+L M + G P+ +Y +LI
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453
Query: 147 KKL 149
L
Sbjct: 454 HGL 456
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
Y + +A V M +G +PNV Y ++ +A + ++GL P+
Sbjct: 386 YAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 445
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN------------- 94
+ YT+++ G C + ++ EL+ E ++RG+ N + ++I H
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 505
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ IG P IT+N +I C GK+D+A LL M G P Y TLI
Sbjct: 506 LMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 558
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE M+ + + G PDV +Y V++GF K G S++ +E ++RG+ P+VV
Sbjct: 183 LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV----- 237
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I ALC +DKA+ +L M ++G +P Y++++
Sbjct: 238 -------------TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 278
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M D G PN+ YT L +A E+++ + + G+ +
Sbjct: 422 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNT 481
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+ +++D CK GR E +L + + GV P+++T LI L +
Sbjct: 482 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 541
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +T+ +I C V ++D AL L M G P+ Y+ +++ L
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P V TY IL + L NV G + D T+T ++ G C R+++ M++
Sbjct: 90 PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + ++G IP ++NN+++ LC + +AL LL +M +
Sbjct: 150 V-----------------LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192
Query: 134 ---GKIPSRTLYDTLI 146
G P Y+T++
Sbjct: 193 RGGGSPPDVVSYNTVL 208
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A + M +G PN+ TY I+ A E+ +++ G + +
Sbjct: 561 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLE 620
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++ G CK ++E + + +T + L T TFN +
Sbjct: 621 LSTYNIILHGLCKNNLTDEALRMFQNL--------CLTDLQLE----------TRTFNIM 662
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I AL G++D+A L +G +P Y + + L +Q
Sbjct: 663 IGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQ 704
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + + + D + + G P TY L EA E+ + G++P+
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPN 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VIDIGHI-- 101
VYTYT ++DG C VG++ E ++LLN IE+ PN VT + N V D I
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVE 376
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLIKKL 149
P IT+N ++ LC G +D+A LL+LM + P Y+ LI L
Sbjct: 377 LMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ + M +G ++ T+ IL EA L +K GL+ D
Sbjct: 187 FCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEAD 246
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ YT+++ GFC G + L +E +ERG +P +T L
Sbjct: 247 LVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFE 306
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G P T+ +I LCGVGK +AL LL LM E + P+ Y+ +I KL
Sbjct: 307 FMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKL 362
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY A V+ M G+ NV + IL +A +L ++ + L P
Sbjct: 116 CYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMP 175
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
DV++Y V+ GFC+ + +EL NE G + ++VT + L
Sbjct: 176 DVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFL 235
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +G + + ++I+ C G++D+ L + E G P Y+TLI+
Sbjct: 236 KEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ + M + P+V ++ I+ A +L+ + GL PD+
Sbjct: 540 CKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDL 599
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+TY+ +++ F K+G +E + ++ ++ G P+
Sbjct: 600 FTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633
Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKP 49
C +A ++++ M P+ TY IL EA ++L + D P
Sbjct: 363 CKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDP 422
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTI--- 105
DV +Y A++ G CK R ++ +++ + +E+ G V T I L++ + G + + +
Sbjct: 423 DVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELW 482
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ +I C G ++ A LL M PS Y+ L+ L
Sbjct: 483 KQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSL 539
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDV 51
C +N +A + D + + G VTT +L +A E+ + + + +
Sbjct: 435 CKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNS 494
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYTA++DGFCK G N LL + + P+V +N ++
Sbjct: 495 DTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSV------------------FDYNCLL 536
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+LC G +D+A L M P ++ +I
Sbjct: 537 SSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMI 571
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 5 KNDFFEARKVIDYMF---DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ DF A K ++F G+ PN+ TY ++ A + + PD
Sbjct: 149 EGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPD 208
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+TY+ +M+G CK R +E + LL+E G PN VT L
Sbjct: 209 VFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVD 268
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N+ G +P +T+N +I LC GK+DKAL LL M +P++ Y T+I L +Q
Sbjct: 269 NMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQ 327
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 30/165 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G PNV Y EA ++L + + G P+ +TY+++M GF K G
Sbjct: 375 MAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGD 434
Query: 67 SNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI----------------PRTITFNN 109
S + + + E + + + NVV + L+ + + G + P + +++
Sbjct: 435 SQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSS 494
Query: 110 VIQALCGVGKIDKALLLLFLM--YEHGKIPSRTLYDTLIKKLDQQ 152
+I+ LC VG +DK L L + M E P Y+ L L +Q
Sbjct: 495 MIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQ 539
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C K +A +++ M + PN TY TI+ + +LM+++ G K +
Sbjct: 290 CLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANE 349
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y Y++++ G K G+S + L E E+G PNVV + I
Sbjct: 350 YIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVV------------------VYGAFI 391
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC K D+A +L M G +P+ Y +L+K
Sbjct: 392 DGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMK 427
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 30/173 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M G+ PN TY+ L +A + + + ++ +V + ++
Sbjct: 402 EAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLL 461
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI---------------- 101
+G C+ GR E + + + G+ P+VV + + D+G +
Sbjct: 462 NGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPK 521
Query: 102 --PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+N + ALC + +A+ LL M + G P + ++ L ++
Sbjct: 522 SRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRER 574
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK-------------P 49
C EA V +M G P+V Y+ + + + GLK P
Sbjct: 465 CESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRP 524
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
DV TY + + C+ ++LLN ++ G P+ +T
Sbjct: 525 DVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 563
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 5 KNDFFEARKVIDYMF---DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ DF A K ++F G+ PN+ TY ++ A + + PD
Sbjct: 173 EGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPD 232
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+TY+ +M+G CK R +E + LL+E G PN VT L
Sbjct: 233 VFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVD 292
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N+ G +P +T+N +I LC GK+DKAL LL M +P++ Y T+I L +Q
Sbjct: 293 NMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQ 351
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 30/165 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G PNV Y EA ++L + + G P+ +TY+++M GF K G
Sbjct: 399 MAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGD 458
Query: 67 SNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI----------------PRTITFNN 109
S + + + E + + + NVV + L+ + + G + P + +++
Sbjct: 459 SQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSS 518
Query: 110 VIQALCGVGKIDKALLLLFLM--YEHGKIPSRTLYDTLIKKLDQQ 152
+I+ LC VG +DK L L + M E P Y+ L L +Q
Sbjct: 519 MIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQ 563
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C K +A +++ M + PN TY TI+ + +LM+++ G K +
Sbjct: 314 CLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANE 373
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y Y++++ G K G+S + L E E+G PNVV + I
Sbjct: 374 YIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVV------------------VYGAFI 415
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC K D+A +L M G +P+ Y +L+K
Sbjct: 416 DGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMK 451
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 30/173 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M G+ PN TY+ L +A + + + ++ +V + ++
Sbjct: 426 EAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLL 485
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI---------------- 101
+G C+ GR E + + + G+ P+VV + + D+G +
Sbjct: 486 NGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPK 545
Query: 102 --PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+N + ALC + +A+ LL M + G P + ++ L ++
Sbjct: 546 SRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRER 598
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK-------------P 49
C EA V +M G P+V Y+ + + + GLK P
Sbjct: 489 CESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRP 548
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
DV TY + + C+ ++LLN ++ G P+ +T
Sbjct: 549 DVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 587
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A ++++ M + P V TY + EAY + K+ G++ +
Sbjct: 342 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELN 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V Y++++DGF KVGR +E +L E +++G+TPNV T L+
Sbjct: 402 VVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQ 461
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ P T T++ +I LC V K +KA + M + G +P+ Y T+I L
Sbjct: 462 SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 517
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + + R + + + G+ P+V +Y+IL E + +K G
Sbjct: 271 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL 330
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR------ 103
D Y AV+DGFCK G+ ++ E+L E E+ V P V T + V + I R
Sbjct: 331 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI--VDGLAKIDRLDEAYM 388
Query: 104 -------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L+L M + G P+ +++L+ L
Sbjct: 389 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 447
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M G PNV T+ L EA ++K P+ YTY+ ++
Sbjct: 420 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILI 479
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G C+V + N+ + ++G+ PNVVT + +I L VG
Sbjct: 480 NGLCRVQKYNKAFVFWQDMQKQGLVPNVVT------------------YTTMISGLAKVG 521
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I A L +G IP ++ LI+ +
Sbjct: 522 NITDAYSLFERFKANGGIPDAASFNALIEGM 552
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE-AIERGV----TPNVVTL 89
A++ +K GLKPD +YT+++ CK GR E EL + ER V N + +
Sbjct: 2 AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61
Query: 90 IH------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ L + + G IP ++FN+++ L K+D+AL L +M + + P
Sbjct: 62 GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE-P 120
Query: 138 SRTLYDTLIKKL 149
+ + Y+ +I L
Sbjct: 121 NSSTYNIIIDML 132
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K EA + + M + PN +TY I+ EAY +L +++ L P
Sbjct: 97 CLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFP 155
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
++ T ++D CK + E ++ A +RG P+ V T+ +
Sbjct: 156 NLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCV------------------TYCS 197
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I L G++D+A L M + G + +Y +LI+
Sbjct: 198 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 237
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+ +YT + EA E+ ++ + P Y Y ++ G+ GR +
Sbjct: 13 GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDA 72
Query: 71 MELLNEAIERGVTPNVVTL----------------IHLHNVIDIGHIPRTITFNNVIQAL 114
+LL ERG P+VV+ + L V+ P + T+N +I L
Sbjct: 73 YKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDML 132
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G++++A +L M P+ + ++ +L
Sbjct: 133 CLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRL 167
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K+ + G +P+ TY L EAY + + + G +
Sbjct: 168 CKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANP 227
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+++ F GR + ++ E I RG P++ L N +
Sbjct: 228 VVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLL------------------NTYM 269
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G+++K ++ + +G +P Y LI L +
Sbjct: 270 DCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 309
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 28/151 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F A ++I M G+ P+ +TY+ + +A+ + +K+ G+ P
Sbjct: 262 CLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNP 321
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + +E G + NVVT L+H
Sbjct: 322 DVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIF 381
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+ +ID G P TIT++ ++ LC G+I KA
Sbjct: 382 NRMIDAGCPPNTITYSALVDGLCKAGEIQKA 412
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A++V M GY P V TYT L A ++L + P+
Sbjct: 489 FCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPN 548
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYTA++DG C++G + ++LL+ E+G +PNVV T+ +
Sbjct: 549 VVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVV------------------TYTAL 590
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L GK+D +L L M G P+ Y LI
Sbjct: 591 IDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLI 626
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 16 DYMFDNGYH-----PNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
D+ F+ G H PNV TY +++A E+L + ++G +P+ Y A++D
Sbjct: 429 DFYFE-GKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALID 487
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIP 102
GFCKVG+ + E+ + G P V T L +++ P
Sbjct: 488 GFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTP 547
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ +I LC +G+ KAL LL +M E G P+ Y LI L
Sbjct: 548 NVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGL 594
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 44/192 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +AR D M G NV TYT L +A ++ + + G P+
Sbjct: 333 FCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPN 392
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI----------------ERGVTPNVVT------ 88
TY+A++DG CK G + E+ + I + PNVVT
Sbjct: 393 TITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALID 452
Query: 89 -LIHLHNVIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L H V+D + P I ++ +I C VGKID A + M + G +P
Sbjct: 453 GLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLP 512
Query: 138 SRTLYDTLIKKL 149
+ Y +LI +
Sbjct: 513 TVHTYTSLIDAM 524
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
+L +++ G P Y ++D F K GR E +EL E +E + N+ +
Sbjct: 674 LLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITS--------- 724
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++IQALC +++KA L + G +P +++ LIK L
Sbjct: 725 ------KDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGL 770
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 27/151 (17%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
+++I+ M G +PN + + L AY++L + + G P Y +
Sbjct: 162 KRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGS 221
Query: 61 FCKVGR--SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
C S +++ L + E + + V + N + LCG+G
Sbjct: 222 ICGGEELPSPDLLALAEKVYEEMLASSCVL--------------NKVNTANFARCLCGMG 267
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K D A ++ +M G +P + Y +I L
Sbjct: 268 KFDMAFQIIKVMMGKGFVPDTSTYSKVITFL 298
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K+ M ++ P V TYT+L EA + +K G +P+V
Sbjct: 275 CEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNV 334
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI 98
+TYT ++DG CK + +E ++L+E E+G+ P+VVT L ++D+
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL 394
Query: 99 GHI----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T T+N +I LC K+ KA+ LL M E PS Y++LI
Sbjct: 395 MESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLI 446
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + G HP+ TYT L AYE+ + + G + +
Sbjct: 204 YCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRN 263
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV----------------VTLIHLHN 94
+YT ++ G C+ GR NE ++L + E P V V ++L N
Sbjct: 264 EVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFN 323
Query: 95 VI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P T+ +I LC K+D+A +L M E G IPS Y+ LI
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A +++ M + P++ TY L AY +L + +GL PD
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+ +D CK GR E L + +GV N + + +I
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN------------------EVIYTALI 516
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C VGKID A LL M +P+ Y+ LI+ L ++
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 19/160 (11%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDVYTYTA 56
F A KV ++M GY P+V TYT L AY +++ + +G+ PD+ TYT
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHIPRT---ITFNNVIQ 112
++DG+ ++G ++ + L ++ G P++ + I + N+ + T I ++V
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSN 714
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
L + + AL L M EHG ++Y LI QQ
Sbjct: 715 TL----EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQ 750
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + D + G N YT L AY +L + ND P+
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
YTY +++G CK + E L+ + + GV P VVT L ++
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G+ P T+ + A G +++ ++ M E G +P Y LI
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLI 656
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------H 93
N+ + P++YT+ A+++G+CK+G E ++ ++ G+ P+ T L
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246
Query: 94 NVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N ++ G +++ N+I LC G+I++AL L M E P+ Y LI
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306
Query: 147 KKLD 150
L
Sbjct: 307 YALS 310
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K+ + M ++G +V+ Y L EA ++ ++K G+ P Y +++D
Sbjct: 721 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLD 780
Query: 60 GFCKVGRSNEVMELLNEAIERGVTP-----------------NVVTLIHLHNVIDIGHIP 102
CK+G E + L++ +E G+ P N H ++ G+
Sbjct: 781 CCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNY 840
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + +I L +D+ L+ +M E G P+ Y LI+ L++
Sbjct: 841 DEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLER 889
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + EA +++D M +NG P + +Y +L +A + + + G
Sbjct: 781 CCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNY 840
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
D + ++DG K +E EL++ E+G PN +T
Sbjct: 841 DEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLT 879
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 11/156 (7%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ E VI M + G P++ TYT+L A++ L + + G KP
Sbjct: 624 YFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPS 683
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y + ++ R E + + L +++ G + +
Sbjct: 684 LYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGAL 743
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C ++++A L+ M E G PS +Y++L+
Sbjct: 744 IAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLL 779
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N F+A ++ M + G+ P+V Y + +A E+ ++ DG++ D
Sbjct: 149 FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRAD 208
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHI-------- 101
TY +++ G C GR ++ L+ + + R + PNV+T + +V + G
Sbjct: 209 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 268
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+N++I LC G++D+A +L LM G +P Y+TLI
Sbjct: 269 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLI 321
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 33/155 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ + M P+V TY L EA +ML + G PD
Sbjct: 254 FVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPD 313
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V TY +++GFCK R +E +L E +RG+ + +T +N I G+
Sbjct: 314 VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT----YNTIIQGYFQAGRPDAAQ 369
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLL 127
P T++ ++ LC +++KAL+L
Sbjct: 370 EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLF 404
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA++++D M G P+V TY L E ++ + GL D TY ++
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI------------ 105
G+ + GR + E+ + R PN+ T I L+ + + + +
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 413
Query: 106 ----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N VI +C +G ++ A L + G P Y T+I
Sbjct: 414 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMI 458
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 29/124 (23%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY+IL +A + N++ ++ D+ TY V+ G CK+G + +L
Sbjct: 379 PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDL 438
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+G+ P+VV ++ +I C + DK+ LL M E
Sbjct: 439 FRSLSCKGLKPDVV------------------SYTTMISGFCRKRQWDKSDLLYRKMQED 480
Query: 134 GKIP 137
G +P
Sbjct: 481 GLLP 484
Score = 42.7 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------V 95
G+ D+Y+Y V++ C+ R + ++ + ++ G P+VVT+ L N
Sbjct: 99 GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 158
Query: 96 IDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
ID+ G P + +N +I C +G ++ A+ L M G Y++L+
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 218
Query: 149 L 149
L
Sbjct: 219 L 219
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A K++D M + G P+V TY +L EA + L N+ + G +P+V
Sbjct: 93 CKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNV 152
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI--- 98
T+ ++ C GR + +LL++ + +G +P+VVT L N IDI
Sbjct: 153 ITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 212
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P ++++N ++ C K+D+A+ L +M G P Y+TL+ L
Sbjct: 213 MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 267
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + +D M G +P++ TY L A E+L + + G P
Sbjct: 232 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 291
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG KVG++ ++LL+E +G+ P+++T L H
Sbjct: 292 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 351
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ +G P IT+N+++ LC + D+A+ L M P+ Y LI+
Sbjct: 352 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 405
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 31/145 (21%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A ++L ++N G KPDV TY +++G CK GR +E ++ LN G PNV+T H
Sbjct: 100 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT----H 155
Query: 94 NVI------------------DI---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
N+I D+ G P +TFN +I LC G + +A+ +L M
Sbjct: 156 NIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPM 215
Query: 133 HGKIPSRTLYDTLI------KKLDQ 151
HG P+ Y+ L+ KK+D+
Sbjct: 216 HGCTPNSLSYNPLLHGFCKEKKMDR 240
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A K++ M G P+V T+ IL A ++L + G P+
Sbjct: 163 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNS 222
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV------IDI------- 98
+Y ++ GFCK + + +E L+ + RG P++VT L +D+
Sbjct: 223 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 282
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P IT+N VI L VGK ++A+ LL M G P Y +L+ L ++
Sbjct: 283 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSRE 340
Score = 35.4 bits (80), Expect = 8.5, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 46/118 (38%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K++D M G P++ TY+ L EA + +++ G++P+ TY ++M
Sbjct: 311 AIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIML 370
Query: 60 GFCKV-----------------------------------GRSNEVMELLNEAIERGV 82
G CK G + E ++LLNE RG+
Sbjct: 371 GLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 32/144 (22%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ K D ARK++++M NG PNV Y++L EA E+ +K+ GLKP
Sbjct: 282 CHGGKAD--RARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKP 339
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D YT +++ FC VGR +E MELL E E + V TFN
Sbjct: 340 DTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAV------------------TFNV 381
Query: 110 VIQALCGVGKIDKALLLL-FLMYE 132
+++ LC G+ D+AL +L L YE
Sbjct: 382 LLKGLCREGRFDEALRMLENLAYE 405
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGY-HPNVTTYTIL-----------EAYEMLMN-VKNDGLK 48
+C D A +V+ M + +PNV TY+ L EA E+ V D +
Sbjct: 209 HCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQIL 268
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------V 95
PD TY+ ++ GFC G+++ +++ G PNV L N V
Sbjct: 269 PDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEV 328
Query: 96 ID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G P T+ + +I CGVG+ID+A+ LL M E ++ L+K L
Sbjct: 329 FDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGL 386
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A ++I M G+ P+ +TY+ + +A+ + +K G+ P
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + L E G +P VVT LIH
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
H ++D G P +T+ ++ LC G I KA
Sbjct: 382 HRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 413
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A++V M GY P+V TYT L A ++L + D P+
Sbjct: 489 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDI------ 98
V TYTA++DG C++G S + ++LL+ E+G +PNVVT L + ID+
Sbjct: 549 VVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFT 608
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLL 127
G P +T+ +I LC G +DKA LLL
Sbjct: 609 QMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLL 642
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L A+E+L + + G +P+ Y A++DGFCK G+ + E+
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501
Query: 74 LNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVIQALCG 116
+ + G P+V T L ++ P +T+ +I LC
Sbjct: 502 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G+ +KAL LL LM E G P+ Y LI L
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 594
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A+ + + M G P V TYT L +A ++ + + G +P+
Sbjct: 333 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 392
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI----------------ERGVTPNVVT------ 88
TY A++DG CK G ++ E+ + I + PNVVT
Sbjct: 393 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 452
Query: 89 -------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ H H ++D G P I ++ +I C GKID A + M + G +P
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512
Query: 138 SRTLYDTLIKKL 149
S Y +LI ++
Sbjct: 513 SVHTYTSLIDRM 524
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLK 48
YCN+ D+ A K+++ M G P Y I + ++ + + L
Sbjct: 187 YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLA 246
Query: 49 PDVYTYTAVMDGF----CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+ + F C VG+ ++ +L+ E + +G P+ T
Sbjct: 247 ANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPD------------------T 288
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++ VI LC K++KA LL M G P Y LI
Sbjct: 289 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
+++I+ M G +PN + + L AY++L + G P Y +
Sbjct: 162 KRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGS 221
Query: 61 FCKVGR--SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
C + S ++++L + + N V N +++ + R LCGVG
Sbjct: 222 ICGQEKLPSPDLLDLAEKIYGEMLAANCVL-----NKVNVANFAR---------CLCGVG 267
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K DKA L+ M G +P + Y +I L
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 298
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 26/117 (22%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
+L +++ G P Y ++D F K GR MEL E +E
Sbjct: 674 ILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME------------------ 715
Query: 98 IGHIPRTITFNN-----VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P ++ +N +IQALC ++++A L M G +P +++ LIK L
Sbjct: 716 ---VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGL 769
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CNK D +A D M + G +V TY +L EA +M+ ++ G++PDV
Sbjct: 333 CNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDV 392
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV---------------- 95
TY ++G+C+ G + + + L +E +E+ + P V T L +V
Sbjct: 393 VTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKK 452
Query: 96 -IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I G +P I FN +I C G ID+A LL M +P ++TL++
Sbjct: 453 SIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQ 505
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + + +A+ I +M G PNV TY T++ Y ++ +K+ LKPD
Sbjct: 228 CREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDC 287
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY + + CK R E +L + +E G+ PN V T+N +I
Sbjct: 288 YTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAV------------------TYNALI 329
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G +DKA M G + S Y+ LI L
Sbjct: 330 DGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHAL 367
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A + D M + P V TYT L EA E +G+ PD
Sbjct: 402 YCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPD 461
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ + A++DG C G + +LL E V +P +TFN +
Sbjct: 462 IIMFNALIDGHCVNGNIDRAFQLLKEMDNAKV------------------VPDEVTFNTL 503
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+Q C K+++A LL M E G P Y+TLI
Sbjct: 504 MQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLI 539
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ +N EA + G P++ + L A+++L + N + PD
Sbjct: 437 FGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPD 496
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
T+ +M G+C+ + E +LL+E ERG+ P+ + TLI
Sbjct: 497 EVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFD 556
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ +G P +T+N +IQ +G+ D A LL M G P + Y
Sbjct: 557 EMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA+K++D M + G P+ +Y L +A E+ + + G P
Sbjct: 507 YCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPT 566
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+ TY A++ G+ K+G ++ ELL E +G+TP+ T +++
Sbjct: 567 LLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYV 608
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------------ 94
+K + T+ +++ C+ G+ + + + GV PNVVT + N
Sbjct: 213 IKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAAS 272
Query: 95 -----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D P T+N+ I LC +I++A +L + E G +P+ Y+ LI
Sbjct: 273 KIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALI 329
>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + D M D G+ PNV TY L A +L +++ +PDV
Sbjct: 126 CVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDV 185
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI------ 101
YT+++D CK + E L ++ + +G++P++ T L+H L N+ + H+
Sbjct: 186 VIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQ 245
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + F+ V+ ALC GK+ +A ++ +M + G P Y TL+
Sbjct: 246 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLM 297
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 22 GYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV T IL A+ +L + G +PD T+T ++ G C G+ E
Sbjct: 75 GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEA 134
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+ L ++ I+ G PNVV T+ +I LC VG A+ LL M
Sbjct: 135 LHLFDKMIDEGFQPNVV------------------TYGTLINGLCKVGNTSAAIRLLRSM 176
Query: 131 YEHGKIPSRTLYDTLIKKL--DQQ 152
+ P +Y ++I L D+Q
Sbjct: 177 EQGNCQPDVVIYTSIIDSLCKDRQ 200
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 85/206 (41%), Gaps = 63/206 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN ++ +++ M ++ P+V ++ + EA+E++ + G++PDV
Sbjct: 231 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDV 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------------LIHLHNVID 97
TYT +MDG C +E +++ + + +G P+V++ L+ L VI
Sbjct: 291 VTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIG 350
Query: 98 IGH-------------------------------------IPRTITFNNVIQALCGVGKI 120
+ +P + F+ V+ ALC GK+
Sbjct: 351 LVKETPDAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKV 410
Query: 121 DKALLLLFLMYEHGKIPSRT-LYDTL 145
+A ++ +M + G P+ ++DT+
Sbjct: 411 MEAHDVVDMMIKRGVEPNAVKVFDTM 436
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 45/131 (34%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C +++ EA KV D M G+ P+V +YT L
Sbjct: 300 HCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAV 359
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+ +L + N + P+V ++ V+D CK G+ E ++++
Sbjct: 360 KGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDM 419
Query: 77 AIERGVTPNVV 87
I+RGV PN V
Sbjct: 420 MIKRGVEPNAV 430
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D A+KV++ M + G NV TY L EA+ +++ GL PD
Sbjct: 253 YCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPD 312
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TY A+++G CK GR ++ LL+E G+ PNVV TLI +
Sbjct: 313 GFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVK 372
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P IT++N+I+ LC +G++ +A +L M + G + Y+ +I+
Sbjct: 373 EMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIE 426
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++ M GY + TY ++ EA+ +L ++ G+ P+V
Sbjct: 394 CKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNV 453
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
YTY+ +++G C++G S LL + I G+ PN LI L
Sbjct: 454 YTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKK 513
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ P +N++I L VGK+D+A+ M E G P+ Y LI
Sbjct: 514 MTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLI 565
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +++ M +G PN Y L A E L + + L PD+
Sbjct: 464 CQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDL 523
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y Y +++ G VG+ +E +E +E +E+G PN T LIH LH
Sbjct: 524 YCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQ 583
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G P + +++ ++K L M E G +P LY +I L
Sbjct: 584 MLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNL 638
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D +A ++D M G P ++ Y L A + ++ GL P+
Sbjct: 673 FCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPN 732
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHIPRTI---- 105
TYT ++DG+CK G + ++L NE + GV P+ V + + G + + +
Sbjct: 733 CVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITE 792
Query: 106 -----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
+FN ++ C GK+ + + L +M + +PS
Sbjct: 793 EMIARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPS 836
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G+ PDVYTY+ +++ +CKV +++ E E G + NVVT L
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ D G +P T+ +I LC G+ D+A LL M G +P+ +Y TLI
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDG 357
Query: 149 LDQQ 152
+Q
Sbjct: 358 FMRQ 361
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +D AR + + + G PN TYT L +A ++ + +G+ PD
Sbjct: 708 FCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPD 767
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIH--------------LHN 94
+ Y+ + G G + + + E I RG + + TL+H LH
Sbjct: 768 AFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKFLHV 827
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKA 123
++D +P +T N++ L GK+ +A
Sbjct: 828 MMDKDIVPSLLTVENIVIGLGEAGKLSEA 856
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ + + M + G P+ Y I+ A +L ++ +GL PD
Sbjct: 603 YFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPD 662
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID 97
Y +++ GFCK + + LL+E ++G+ P + + H N+ +
Sbjct: 663 SLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFN 722
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
G P +T+ +I C G I A+ L M G P +Y L
Sbjct: 723 SIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVL 774
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K++ M G PN TY L A +L + G D TY V+
Sbjct: 366 EAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVI 425
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G + E LLNE + G++PNV T++ +I LC +G
Sbjct: 426 EGHLRQHNKEEAFLLLNEMRKGGISPNVY------------------TYSIIINGLCQIG 467
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++A LL M G P+ +Y LI
Sbjct: 468 ESERASGLLEQMIADGLKPNAFVYAPLI 495
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
CN+ EA ++ + M G+ PNV +Y TI+ A ++ ++ +G KPDV
Sbjct: 169 CNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDV 228
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TY ++D CK N+ ME L+E ++RG+ PNV T +H +G +
Sbjct: 229 VTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKE 288
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+T ++ LC G + +A L+ M E G P+ + Y+ L+
Sbjct: 289 MVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALM 340
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA+KV + M G P V +Y IL EA +L + + L PD
Sbjct: 343 YCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPD 402
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY+ +M G C+ GR E + + E G+ PN+VT I L GH+
Sbjct: 403 TVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLK 462
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + +I+ + GK++ A L ++ G P+ Y +IK L
Sbjct: 463 SMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGL 518
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + + M D G PNV TY + EA + + + PD T T ++
Sbjct: 246 DAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILV 305
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---------LIHLHN--------VIDIGHI 101
DG CK G +E + E+GV PN+ T L L N +I G
Sbjct: 306 DGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCA 365
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P ++N +I C ++D+A LL MY P Y TL++ L Q
Sbjct: 366 PGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 415
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 36/177 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++ M P+ T TIL EA + + G++P+
Sbjct: 273 FCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPN 332
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
+ TY A+MDG+C NE ++ I +G P V H +N++ G
Sbjct: 333 ISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGV----HSYNILINGFCKSRRMDEAK 388
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+T++ ++Q LC G+ +AL + M +G +P+ Y L+
Sbjct: 389 SLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILL 445
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P T+ A+++G C G+ E +EL NE + RG PNV I
Sbjct: 153 GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNV------------------I 194
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++N +I LC G A+ + M ++G P Y+T+I L
Sbjct: 195 SYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSL 238
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA K++ M + PN+ +TIL A E+ + DG++P
Sbjct: 448 FCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPT 507
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ TYT ++ G K G S+E +L + + G PN +
Sbjct: 508 IRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCS 545
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+++ +F +G P + TYT++ EAY++ +++DG P+ +Y ++
Sbjct: 492 AKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQ 551
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
GF + S+ + L++E + + + N+ T
Sbjct: 552 GFLQNQDSSTAIRLIDEMVGKRFSANLSTF 581
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 26 NVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
N T +I +A + +P V + + F K + + V+ L N+ GVT N
Sbjct: 63 NSTNISIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHN 122
Query: 86 VVTLIHLHNVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
V +L L N + +G P TFN +I LC GKI +A+ L
Sbjct: 123 VYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFN 182
Query: 129 LMYEHGKIPSRTLYDTLIKKL 149
M G P+ Y+T+I L
Sbjct: 183 EMVRRGHEPNVISYNTIINGL 203
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ + +A ++D M G P++ TY +L EA +L N+ + G KPD
Sbjct: 297 CKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDA 356
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVIDI------- 98
TYT V+ C R EV ELL E P+ +VT + ++D
Sbjct: 357 VTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDH 416
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + +T+++++ LC VG++D A+ LL + +G P Y T++K L
Sbjct: 417 MSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 471
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K A +V++ M +NG P++ TY I +A E+L ++++ G KPD+
Sbjct: 507 CQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDI 566
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+ ++ G C V R + +L+ + P+ +TFN VI
Sbjct: 567 VTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPD------------------ELTFNTVI 608
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+LC G + +A+ L +M E+G +P+ + Y ++ L
Sbjct: 609 TSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDAL 646
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +V+D+M ++G ++ TY+ + +A E+L +K+ G KPD
Sbjct: 402 CQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDT 461
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT V+ G C + EL+ E + P+ +TFN V+
Sbjct: 462 IAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPD------------------EVTFNTVV 503
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+LC G +D+A+ ++ M E+G P Y+ +I L
Sbjct: 504 ASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGL 541
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 30/175 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A + + M +NG PN +TY+I+ A E+L + N PD+
Sbjct: 612 CQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDL 669
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY V+ K G+ E ++LL + G+ P+ T + L
Sbjct: 670 ITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRR 729
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D G P T +N+V+ C + D A+ M G +P + Y L++ L
Sbjct: 730 VQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEAL 784
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V D M G P+V TY+IL +A +L ++ G +PD+
Sbjct: 262 CVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDI 321
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ C G +E + +L+ G P+ VT + V+
Sbjct: 322 VTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVT------------------YTPVL 363
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++LCG + + LL M + P ++T++ L QQ
Sbjct: 364 KSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQ 404
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 32/159 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC +AR++I+ M + P+ T+ I +A + ++ + G P
Sbjct: 229 YCRAGRIEDARRLINGM---PFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPS 285
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY+ ++D CK + M LL+E +G P++V T+N +
Sbjct: 286 VVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIV------------------TYNVL 327
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I A+C G +D+AL +L + HG P Y ++K L
Sbjct: 328 INAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSL 366
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M NG P+ TTY L A ML V++ GL PD Y V+
Sbjct: 687 EALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVL 746
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
GFC+ R++ ++ + G P+ T + L + G + ++ +LC +G
Sbjct: 747 LGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEA--KRLLASLCSLG 804
Query: 119 KIDKALL 125
+DK L+
Sbjct: 805 VLDKKLI 811
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 25/171 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D A ++ + M + G PN TY+ L EA + + + G+ P
Sbjct: 273 YCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPT 332
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL--------------HNVI 96
V+T+TA + C +GR + ++ + ++G PNV T L H +
Sbjct: 333 VHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMS 392
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G +P T+T+N ++ L +ID AL++ +M +HG +P+ + Y+ LI+
Sbjct: 393 RDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 31/173 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN EA I M +G P V T+T I +A+++ +++K G KP+V
Sbjct: 309 CNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNV 368
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
YTYT+++ G +V R + L + GV PN VT L NV+
Sbjct: 369 YTYTSLISG-QRVSRM--AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNM 425
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G +P T ++N +I+ C +G +KA+ +L M + P+ Y+ +IK
Sbjct: 426 MGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIK 478
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++++ M +G PNV TY +L A E+ + + + PD
Sbjct: 550 YCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPD 609
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
V TY+ V++G C G +E+ N+ ++ G PN+ T L +
Sbjct: 610 VVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFS 669
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G IP +T+ +I+ GK+D+A L M G P+ YD LIK L +
Sbjct: 670 ELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNE 728
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ D A +V++ M NG P+ +YT L A M + + GL P+
Sbjct: 480 YCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPN 539
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------LHN 94
TYTA++ G+CK + + +L G PNV T LIH L
Sbjct: 540 EVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 599
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V+ I P +T++ VI LC G I AL + M +HG +P+ Y +LI+ L Q+
Sbjct: 600 VMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQE 658
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T T+++ Y ++ +GL+P++ Y +V++ CK G + ++N+ + G+ P+ T
Sbjct: 209 TSTVMDRYHQILR---EGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFT 265
Query: 89 L----------------IHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
+ N +D G P T++ +I LC G++++AL + M
Sbjct: 266 YTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMT 325
Query: 132 EHGKIPS 138
HG +P+
Sbjct: 326 RHGVLPT 332
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN A ++ + M +G PN+ TY+ L EA EM +K GL PD
Sbjct: 621 CNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDE 680
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDIGHI 101
TY +++ G+ + + L E I G P + T L H ++ + +
Sbjct: 681 VTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNA 740
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T TF++ I + K D +L + E SR LYD L+ +L +
Sbjct: 741 ASTSTFDDQI-----INK-DVISVLSSKLAELDFELSRQLYDALLSRLSR 784
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------- 91
G K ++TYT ++ K+ ++ VM+ ++ + G+ PN++ ++I+
Sbjct: 188 GPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDA 247
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ V G P T T+ ++I C +D A + M E G P+ Y TLI
Sbjct: 248 ESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLING 307
Query: 149 L 149
L
Sbjct: 308 L 308
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A ++++ M G+HP V TY + EAY + K++G++ +
Sbjct: 490 FCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELN 549
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
Y++++DGF KVGR +E ++ E +++G+TPNV T L+
Sbjct: 550 QVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQ 609
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ D+ P IT+ +I LC V K +KA + M + G P+ Y +I L +
Sbjct: 610 SMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKS 668
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+ R + + + G+ P+ +Y+IL E YE+ +K+ G D Y V+
Sbjct: 428 KGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVI 487
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DGFCK G+ N+ +LL E + +GH P +T+ +V+ L +
Sbjct: 488 DGFCKSGKVNKAYQLLEE------------------MKTMGHHPTVVTYGSVVDGLAKID 529
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+A +L +G ++ +Y +LI
Sbjct: 530 RLDEAYMLFEEAKSNGIELNQVIYSSLI 557
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 29/153 (18%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++D M N + ++ Y + A++ +K +GL PD TYT++M
Sbjct: 115 ALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMG 174
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
CK R +E +E+ E +E+ +P +N +I GK
Sbjct: 175 VLCKANRLDEAVEIF-EQMEQNR-----------------QVPCAYAYNTMIMGYGSAGK 216
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+A LL G IPS Y+ ++ L ++
Sbjct: 217 FDEAYSLLERQRAKGCIPSVVAYNCILTCLGKK 249
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 27/166 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K M NG P+ TYT + EA E+ ++ + P Y Y ++
Sbjct: 150 AWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIM 209
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVIDIGHIPR 103
G+ G+ +E LL +G P+VV + + + +P
Sbjct: 210 GYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPN 269
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I LC G ++ A + M E G P+ + +I +L
Sbjct: 270 LPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRL 315
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 27 VTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
V + ++EA+++L +++ +P YT ++ +VG S+ ++ L N+ E G NV
Sbjct: 37 VKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNV 96
Query: 87 VTLIHLHNVIDI-GHIPRTIT----------------FNNVIQALCGVGKIDKALLLLFL 129
L L V G + ++ +N I VGK+D A
Sbjct: 97 HLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHE 156
Query: 130 MYEHGKIPSRTLYDTLI 146
M +G +P Y +++
Sbjct: 157 MKANGLVPDDVTYTSMM 173
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A KV D M + G PNV T I+ EA + + PD
Sbjct: 281 CKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDG 340
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
T+ +++DG K GR ++ + ++ PNVV L
Sbjct: 341 ATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKE 400
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P + N + + G+ +K L + G +P Y LI L
Sbjct: 401 MMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSL 455
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K+ A V+D M + GY P+ TY L EAY +L +K G PDV
Sbjct: 284 CRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDV 343
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
Y V+ GFC+ GR+ + ++L + E G PN ++ L N
Sbjct: 344 INYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEE 403
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G IP ++ +I LC GK+ +A +L +M + P + + L+ ++
Sbjct: 404 MISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRI 458
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN TY IL AY + + G PDV TY+ +M G C+ +
Sbjct: 233 GISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTA 292
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQA 113
+ +L+E + +G P+ +T L N + +G P I +N VI
Sbjct: 293 LGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITG 352
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G+ A +L M E+G +P+ Y TL+ L
Sbjct: 353 FCREGRALDACQILRDMPENGCLPNALSYRTLVNGL 388
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHP-----NVTTYTILE------AYEMLMNVKNDGLKPDVYTYTAVM 58
EA K M + GY P NV ++E A + + G+ P+ TY ++
Sbjct: 186 EAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILI 245
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
C + + L N+ ++G P+V T L L +++ G++
Sbjct: 246 RAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYV 305
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N ++ +LC + +A LL M G P Y+T+I
Sbjct: 306 PDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVI 350
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-----NVVTLIHL 92
++ ++ DG + +++ + +VG NE ++ ++ +E G P NV+ ++ +
Sbjct: 155 LIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLI 214
Query: 93 HN------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
+ + + G P T T+N +I+A C K+ A L M++ G IP
Sbjct: 215 EHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVE 274
Query: 141 LYDTLIKKL 149
Y L++ L
Sbjct: 275 TYSILMQGL 283
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CNK D AR+ D M G + TYT + EA ++L + L D
Sbjct: 371 FCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVD 430
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYT ++DG+CK G+ E ++ N ++RGVTPNVVT LH
Sbjct: 431 EVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLH 490
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G T+N++I LC G +++A+ + M P Y TLI L
Sbjct: 491 EMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDAL 546
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M + G N TY L +A + ++ LKPDV
Sbjct: 477 CKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDV 536
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++D CK G + LL E +++G+ P +V T+N ++
Sbjct: 537 YTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIV------------------TYNVLM 578
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
C G+++ LL M E P+ Y++L+K+
Sbjct: 579 NGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQ 615
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 32/140 (22%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
+F H NV +Y IL +A ++ + + PDV TY ++ G C +G
Sbjct: 250 LFQELPHKNVCSYNILLKALCDAGRVKDARQLFDEMAS---APDVVTYGILIHGHCALGE 306
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
++LL+E + GV PN + +V+ LC G I AL +
Sbjct: 307 LENAVKLLDEMVAGGVEPNAT------------------VYTSVVALLCDKGWISDALRV 348
Query: 127 LFLMYEHGKIPSRTLYDTLI 146
+ M + I LY T++
Sbjct: 349 VEDMVQRKVILDEALYTTVL 368
Score = 42.4 bits (98), Expect = 0.071, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A K++D M G PN T YT I +A ++ ++ + D
Sbjct: 301 HCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILD 360
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----VIDIGHIPR--- 103
YT V+ GFC G +E +G+ + VT + N +++ +
Sbjct: 361 EALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQ 420
Query: 104 ----------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+T+ +I C GK+ +A + M + G P+ Y L L +Q
Sbjct: 421 EMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQ 479
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +K++D+M + HPN TY ++++ Y E+ +++ + P+
Sbjct: 581 FCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPN 640
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
TY ++ G CK E + +E I++G
Sbjct: 641 ENTYNILIKGHCKARNMKEALYFHDEMIQKG 671
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPDV 51
C D A ++ M D G P + TY +L E + L++ + + P+
Sbjct: 547 CKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNA 606
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++M +C E+ R V PN T+N +I
Sbjct: 607 ATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPN------------------ENTYNILI 648
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ C + +AL M + G + T Y LI+ L+++
Sbjct: 649 KGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKK 689
>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A+++++ MF G P+V TYT + +A +ML + G KP+
Sbjct: 303 YCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPN 362
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+YTA + G C+ G S+E E++ + E+ TPN +T ++H +
Sbjct: 363 TVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVR 422
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P + N ++Q+LC +G++D+A + G + + T+I + QQ
Sbjct: 423 EMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQ 481
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E VI+ M D + TY L EA + L + G + D
Sbjct: 234 CKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDK 293
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y+A++D +CK GR ++ E++NE RG P+VV T+ +I
Sbjct: 294 VGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVV------------------TYTAII 335
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G++ +A +L MY+HG P+ Y +K L Q+
Sbjct: 336 NGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQK 376
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 63/205 (30%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+ARK++ M+ +G PN +YT EA EM+ + P+ TY+ VM
Sbjct: 346 QARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVM 405
Query: 59 DGF-----------------------------------CKVGRSNEVMELLNEAIERGVT 83
GF C++GR +E + + E + G
Sbjct: 406 HGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCA 465
Query: 84 PNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
N V T+IH L ++ P +T+ +I AL G+I++A L
Sbjct: 466 VNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATEL 525
Query: 127 LFLMYEHGKIPSRTLYDTLIKKLDQ 151
M + G P+ Y T+I + Q
Sbjct: 526 TLKMLKKGIDPTPVTYRTVIHRYGQ 550
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 31/137 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C ++D A ++D M+ + HP+ TYT I EA E+ + + G+ P
Sbjct: 478 FCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPT 537
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY V+ + ++GR +++ LL++ + R RT FN V
Sbjct: 538 PVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQEC-------------------RT-AFNQV 577
Query: 111 IQALCGVGKIDKALLLL 127
I+ LC G ++ A LL
Sbjct: 578 IEKLCTFGNLEAADKLL 594
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-----------VTTYTILEAYEMLMNVKNDGLKPD 50
Y A +V+ M G PN V + +A L ++ G+ P+
Sbjct: 128 YSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPN 187
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNVIDIGH 100
V TY ++ G+C + R + MEL++E +G +P+ V+ + V+D+
Sbjct: 188 VVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIE 247
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLL 127
+ +T+N +I LC D+AL L
Sbjct: 248 KMEDTKLLADQVTYNTLIHMLCKHQHADEALQFL 281
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +V D M G PN+ TY L A+E++ + GL PD
Sbjct: 335 YCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPD 394
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------LHNVID 97
+ T ++DG CK R ++ + L N+ +E G+TP+V + LIH N++
Sbjct: 395 IVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLR 454
Query: 98 IGH----IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
H +P +T++ +I LC G+I A LL M+ G +P Y L+ L ++
Sbjct: 455 DMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKK 513
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C EAR++ D M + GY PN+ T T L A E+ + G K DV
Sbjct: 266 CKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
+TY + G+CKVGR + + + +E GV PN+VT L + +
Sbjct: 326 WTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKT 385
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T ++ LC ++D+A+LL + E G P Y LI
Sbjct: 386 MHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILI 437
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKP 49
C C E + + M NG PN TY LE + ++ + GL
Sbjct: 194 CLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDV 253
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
VY +T ++DG CK G E E+ +E + RG PN+VT L
Sbjct: 254 SVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELF 313
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G T+N I C VG++ A+ + M G +P+ Y++LI L
Sbjct: 314 DAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCL 370
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + + ++G P+V +YTIL EA +L ++ L P +
Sbjct: 406 CKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHI 465
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ ++DG C+ GR + LLNE +H+ G +P TIT++ ++
Sbjct: 466 VTYSCLIDGLCRSGRISNAWRLLNE-------------MHVK-----GPLPDTITYSILL 507
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
AL +D+A+ L M + G P Y +I
Sbjct: 508 DALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMI 542
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++++ M G P+ TY+IL EA + + GL+PDV
Sbjct: 476 CRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDV 535
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIPRTITFNNV 110
YT ++DG+CK R +E + L E + + P++VT L N V G F NV
Sbjct: 536 MCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNV 595
Query: 111 IQ 112
I+
Sbjct: 596 IR 597
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 37/166 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKN------D 45
C +A + D + +NG+ N +Y IL EA +L ++ D
Sbjct: 118 CVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKD 177
Query: 46 G--LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
G +K +V Y+ V+D C+ G +E E NE + GV PN
Sbjct: 178 GFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPN------------------ 219
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ ++I+ LCGVGK + L+ M G S ++ LI L
Sbjct: 220 EFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGL 265
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A ++I M G+ P+ +TY+ + +A+ + +K G+ P
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + L E G +P VVT LIH
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
H ++D G P +T+ ++ LC G I KA
Sbjct: 382 HRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 413
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A++V M GY P+V TYT L A ++L + D P+
Sbjct: 489 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDI------ 98
V TYTA++DG C++G S + ++LL+ E+G +PNVVT L + ID+
Sbjct: 549 VVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFT 608
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLL 127
G P +T+ +I LC G +DKA LLL
Sbjct: 609 QMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLL 642
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L A+E+L + + G +P+ Y A++DGFCK G+ + E+
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501
Query: 74 LNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVIQALCG 116
+ + G P+V T L ++ P +T+ +I LC
Sbjct: 502 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G+ +KAL LL LM E G P+ Y LI L
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 594
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A+ + + M G P V TYT L +A ++ + + G +P+
Sbjct: 333 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 392
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI----------------ERGVTPNVVT------ 88
TY A++DG CK G ++ E+ + I + PNVVT
Sbjct: 393 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 452
Query: 89 -------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ H H ++D G P I ++ +I C GKID A + M + G +P
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512
Query: 138 SRTLYDTLIKKL 149
S Y +LI ++
Sbjct: 513 SVHTYTSLIDRM 524
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLK 48
YCN+ D+ A K+++ M G P Y I + ++ + + L
Sbjct: 187 YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLA 246
Query: 49 PDVYTYTAVMDGF----CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+ + F C VG+ ++ +L+ E + +G P+ T
Sbjct: 247 ANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPD------------------T 288
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++ VI LC K++KA LL M G P Y LI
Sbjct: 289 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
+++I+ M G +PN + + L AY++L + G P Y +
Sbjct: 162 KRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGS 221
Query: 61 FCKVGR--SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
C + S ++++L + + N V N +++ + R LCGVG
Sbjct: 222 ICGQEKLPSPDLLDLAEKIYGEMLAANCVL-----NKVNVANFAR---------CLCGVG 267
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K DKA L+ M G +P + Y +I L
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 298
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 26/117 (22%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
+L +++ G P Y ++D F K GR MEL E +E
Sbjct: 674 ILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME------------------ 715
Query: 98 IGHIPRTITFNN-----VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P ++ +N +IQALC ++++A L M G +P +++ LIK L
Sbjct: 716 ---VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGL 769
>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
gi|223975267|gb|ACN31821.1| unknown [Zea mays]
Length = 469
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKP 49
C+ + A + I M ++G+ PN+ T+ T++ Y L NV + GL P
Sbjct: 229 CFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMP 288
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI--- 105
DV T+T+++DG C + ++ +E E GV PNV T + +H + GH+ + I
Sbjct: 289 DVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELL 348
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+FN I + C + KI+KA L M +G P Y+ LIK L
Sbjct: 349 NKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKAL 405
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 29/139 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A M + G PNV TY +L +A E+L +K DG+ PD
Sbjct: 301 CHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDA 360
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y++ A + FC++ + + +L N+ GV+P+ + T+N +I
Sbjct: 361 YSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPD------------------SYTYNALI 402
Query: 112 QALCGVGKIDKALLLLFLM 130
+ALC ++D+A ++ M
Sbjct: 403 KALCDERRVDEAKEIILAM 421
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-- 89
I +A + + +DGL V +Y V+D F K G +E + E G +PN+VT
Sbjct: 201 ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNT 260
Query: 90 ----------IH-----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+H L V++ G +P ITF ++I LC ++D A M E G
Sbjct: 261 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 320
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+ LI L
Sbjct: 321 VRPNVQTYNVLIHGL 335
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G P+ TY L EA ++ ++ G++P+V TYT ++DGFC R
Sbjct: 1 MPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 60
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH 91
E + +L E+GV+ T L+H
Sbjct: 61 VEEAVCVLERMKEKGVSATEATYRSLVH 88
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDG-LKPD 50
C F EA +++DYM G PN TY+ + EA + D + P
Sbjct: 359 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPH 418
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V Y+A++DG CK G+ +E E L I G P+VV TF+ +
Sbjct: 419 VIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVV------------------TFSIL 460
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G+ID L L M E G +P Y TL+ +L
Sbjct: 461 INGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRL 499
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 30/167 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML--MNVKNDGLKPDVYTYTA 56
EA +++ M NG P + T+ ++ A+ ++ M + GL PDV T+ +
Sbjct: 154 EAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNS 213
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIG 99
V+DG CK R + + A+ERG PNVVT L L ++++G
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG 273
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+T++ V+ L VG+++ A+++L M + G +P Y+TLI
Sbjct: 274 CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLI 320
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+ M D G P+ TY L EA +L + G P V TYT +
Sbjct: 296 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC 355
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-----------IGHI------ 101
G C+ GR +E +E+L+ RG PN +T +++D +G+
Sbjct: 356 HGLCRSGRFDEAVEILDYMAARGCAPNAIT---YSSIVDGLCKAGRVTEALGYFEKMARD 412
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P I ++ +I LC GKID+A L M G+IP + LI L
Sbjct: 413 EVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGL 464
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M D +P+V TY L EAY++ + G P V
Sbjct: 6 CKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTV 65
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNE-AIERGVTPNVV---TLIH--------------LH 93
TY ++DG CK GR + L ++ AI G P VV TLI L
Sbjct: 66 VTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLE 125
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+N ++ AL G G+ +A LL M +G P + +IK L
Sbjct: 126 EMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGL 181
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ + K+++ M G PN TY L EA+ +L + +G P++
Sbjct: 112 CRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPEL 171
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEA--IERGVTPNVVT-------------LIHLHNV- 95
T+ ++ G CK G +++E IE G++P+V+T ++ HNV
Sbjct: 172 ITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 231
Query: 96 ---IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +T++ +I L + K+D+AL LL M E G + Y T++ L
Sbjct: 232 KRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGL 288
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 37/174 (21%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTY-TILEAY------EMLMNVKND-----GLKPDVYTY 54
D FE + G HP V TY T+++ E + + +D G +P V TY
Sbjct: 51 DLFEEARA------KGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTY 104
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------D 97
+ ++DG C+ ++ +LL E RG PN VT L N +
Sbjct: 105 STLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAA 164
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLL--FLMYEHGKIPSRTLYDTLIKKL 149
G P ITF +I+ LC G+I+ A ++ M E G P +++++ L
Sbjct: 165 NGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGL 218
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI-------HLHNVIDI-------G 99
++DG CK + ++ + L + +++ + P+VVT LI + D+ G
Sbjct: 1 MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH-GKIPSRTLYDTLIKKL 149
P +T+N +I LC G+I+ AL L M H G P+ Y TLI L
Sbjct: 61 CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGL 111
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ + E + ++ ++ GL+P+V TYT ++D FCK G +L + G TPNVVT
Sbjct: 215 FRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTF 274
Query: 90 IHL----------HNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
L H+ +D+ G P T+++N +I+ LC VG + A +L M +
Sbjct: 275 TALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQ 334
Query: 133 HGKIPSRTLYDTLI 146
HG P+ Y TLI
Sbjct: 335 HGCFPNVRTYSTLI 348
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 17 YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
+M G+ P+ +Y IL A +L +++ G P+V TY+ ++DGF K G
Sbjct: 296 WMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAG 355
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHNV-------------IDIGHI----PRTITFN 108
+ + N+ G PNVV ++ +V ID + P T+TFN
Sbjct: 356 DLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFN 415
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I++LC ++ +AL + M HG +P+ Y+ LI L
Sbjct: 416 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGL 456
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N ARK++D M G P+ TY + EA E+L + P
Sbjct: 147 CQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLA-----AMPPVA 201
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
+Y A++ C+ R EV ++++ + RG+ PNV+T L
Sbjct: 202 ASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILAR 261
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +TF +++ L G++ AL + M G PS Y+ LI+ L
Sbjct: 262 MVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGL 316
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A V M +G PN TY L +A M+ +++ G++ +
Sbjct: 422 CDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSL 481
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH-------------NV 95
TY V+ G C+ S E M + + I +G+ PN T +IH +
Sbjct: 482 VTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGA 541
Query: 96 IDIGHIPRTITFNNVIQA-LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ + R I ++ A LC K+ A+ L M G P+ ++ L++
Sbjct: 542 MNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVR 594
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K F +A+ +ID M PN T+ L A + ++ G P+
Sbjct: 386 FCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPN 445
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
TY ++ G + G + + ++ E G+ ++VT ++ +
Sbjct: 446 GRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVG 505
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+I G P TF+ +I A C G++ A +L M
Sbjct: 506 KMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAM 542
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+K+ M + P V TYT L EA L +K+ G++P+V
Sbjct: 203 CRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNV 262
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDG CK GRS + MEL + RG PN+V T+ +I
Sbjct: 263 FTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMV------------------TYTTLI 304
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC KI +A+ LL M G P LY +I
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVI 339
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ + M G PN+ TYT L EA E+L + GLKPD
Sbjct: 273 CKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDI------------ 98
Y V+ GFC + + E L+E I G+TPN +T IH+ ++
Sbjct: 333 GLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRA 392
Query: 99 ----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G T ++++ LC G+ KA+ L+ + G IPS+ + LI
Sbjct: 393 FTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLI 450
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-- 88
T+ ++ + + G PD YTY ++ G C+ GR +E +L E +E+ P VVT
Sbjct: 172 TVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYT 231
Query: 89 ---------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ +L + G P T+++++ LC G+ +A+ L +M
Sbjct: 232 SLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMAR 291
Query: 134 GKIPSRTLYDTLIKKLDQQ 152
G P+ Y TLI L ++
Sbjct: 292 GCRPNMVTYTTLITGLCKE 310
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ A +V+D + +G P+V TYTIL EA E+ + + GL+PD+
Sbjct: 177 CSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDL 236
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
YTY A++ G CK G + ++ + RG P+VV+ L+ + +
Sbjct: 237 YTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKD 296
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P +T + +I + C G++ +A+ +L +M E G P YD LI
Sbjct: 297 MVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLI 348
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ NK+ + + +++ M +G PNV T++IL EA +L +K GL PD
Sbjct: 281 FLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPD 340
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
Y+Y ++ FCK GR + +E L + + G P++V L
Sbjct: 341 SYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFE 400
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++G P +N + AL G KAL ++ M G P Y++LI L
Sbjct: 401 KLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCL 456
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
+C + A + ++ M +G P++ Y TIL A ++ + G P
Sbjct: 351 FCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPT 410
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVID--IGHI- 101
V Y + G + +E+++E I +G+ P+ +T L ++D IG +
Sbjct: 411 VRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLV 470
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P I+FN V+ +C ++ + + LL M E G +P+ T Y LI+
Sbjct: 471 DMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIE 524
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N + +A +V++ + G P+V +Y + A ++ +++ G PD
Sbjct: 107 FFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPD 165
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY ++ C G+ E+++E ++ G P+V+T L
Sbjct: 166 VVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFD 225
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P T+N +I+ +C G D+AL + + G P Y+ L++
Sbjct: 226 ELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSF 281
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV------V 87
E+ L +V + G KPDV T ++ GF + M ++ E +E P+V +
Sbjct: 80 ESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM-EILETYGDPDVYSYNAMI 138
Query: 88 TLIHLHNVIDI-----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ N ID G P +T+N +I +LC GK++ A ++ + + G
Sbjct: 139 SGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCK 198
Query: 137 PSRTLYDTLIK 147
PS Y LI+
Sbjct: 199 PSVITYTILIE 209
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 28/151 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A VI M G+ P+ +TY+ + +A+++ +K +G+ P
Sbjct: 96 CLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITP 155
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCKVG + +E + G PNVVT LIH
Sbjct: 156 DVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIF 215
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
++ G +P +T+ +I C G+ +KA
Sbjct: 216 EMMLSNGCVPNIVTYTALIDGHCKAGETEKA 246
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 28/151 (18%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PNV TY L EA ++L + +G +P+ Y A++DGFCKVG+ +E E
Sbjct: 276 EPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQE 335
Query: 73 LLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALC 115
+ + + G +PNV T L L +++ P + + ++ LC
Sbjct: 336 VFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLC 395
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK D+A L+ +M E G P+ Y +I
Sbjct: 396 KVGKTDEAYRLMLMMEEKGCYPNVVTYTAMI 426
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA++V M +G PNV TY+ L A ++L + + P+
Sbjct: 324 FCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPN 383
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YT ++DG CKVG+++E L+ E+G PNVVT + +
Sbjct: 384 VVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVT------------------YTAM 425
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G++D+ L LL LM G P+ Y LI
Sbjct: 426 IDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLI 461
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 51/196 (26%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
+C +AR D M +G PNV TYT L E +EM+++ +G
Sbjct: 167 FCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLS---NGC 223
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-----------------TPNVVT-- 88
P++ TYTA++DG CK G + + ++ V PNVVT
Sbjct: 224 VPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYG 283
Query: 89 -----LIHLHNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L H V + G P I ++ +I C VGK+D+A + M H
Sbjct: 284 ALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGH 343
Query: 134 GKIPSRTLYDTLIKKL 149
G P+ Y +LI KL
Sbjct: 344 GCSPNVYTYSSLIDKL 359
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY +++ ++ G P+V TYTA++D
Sbjct: 368 ALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMID 427
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDIGH----------IPR 103
GF K GR + +ELL +G PN +T L N ++D H P+
Sbjct: 428 GFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPK 487
Query: 104 TI-TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I + VI+ + +L LL + E G +P +Y LI
Sbjct: 488 HIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYKLLI 529
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 70/214 (32%), Gaps = 69/214 (32%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
YC D+F A K++ M GY P Y IL
Sbjct: 21 YCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLE 80
Query: 34 ------------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+AY ++ + + G PD TY+ V+ C + +
Sbjct: 81 MGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEK 140
Query: 70 VMELLNEAIERGVTPNVVTLIHL-------------HNVIDI----GHIPRTITFNNVIQ 112
+L E G+TP+V T L N D G P +T+ +I
Sbjct: 141 AFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIH 200
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
A K+ +A + +M +G +P+ Y LI
Sbjct: 201 AYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALI 234
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 28/152 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D EA +++ M + G +PNV TYT + E+L + + G P
Sbjct: 395 CKVGKTD--EAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAP 452
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE---------------AIERGVTPNVVTLIHLHN 94
+ TY +++ C G ++ +LL E IE V +L L
Sbjct: 453 NFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAE 512
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ + G +P + +I G+++ AL L
Sbjct: 513 LSEDGSVPILPVYKLLIDNFIKAGRLEMALEL 544
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + M D G P+V TYT + EA + ++ G KPDV Y ++
Sbjct: 321 DAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTII 380
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHI---------------- 101
D CK N+ ME L+E ++RG+ PN VT LH ++G +
Sbjct: 381 DSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVM 440
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+TF+ ++ LC G + +A + M E G P+ Y+ L+
Sbjct: 441 PNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALM 485
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M NG P+V TY I+ +A + L + + G+ PDV
Sbjct: 279 CCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDV 338
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HLHN 94
TYT ++ G C +G+ NE + L + ++G P+VV T+I L
Sbjct: 339 VTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSE 398
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++D G P +T++ ++ C +G++D+A L M +P+ + L+ L Q+
Sbjct: 399 MVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQE 456
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + A V M NG PNV TY + +A + L + G+ PD
Sbjct: 209 CNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDA 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------LIH-----LHN 94
TY +++ G C +G+ NE L + G P+VVT L++ L
Sbjct: 269 ITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSE 328
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P +T+ ++ LC +G++++A+ L M + G P Y+T+I L
Sbjct: 329 MVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSL 383
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C N A V MF G P+V T+T L A E+ + G +P
Sbjct: 137 CLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEP 196
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
DV +Y +++G C G +N + + + + G PNVVT + L
Sbjct: 197 DVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFL 256
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P IT+N+++ LC +G++++A L M ++G P Y+ +I L
Sbjct: 257 SEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSL 313
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 36/180 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN EA ++ M PN T++IL EA + + G++P+
Sbjct: 418 FCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPN 477
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
+YTY A+M+G+C + NE ++ + +G P+ +H +N++ G+
Sbjct: 478 IYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPD----LHSYNILINGYCNSRRMDKAK 533
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+T+N +++ LC VG++ A L M G +P+ Y L+ L
Sbjct: 534 ALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGL 593
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + M G P+ TY + EA + ++ +G KPDV TY ++
Sbjct: 251 DAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIII 310
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHI---------------- 101
D K N+ + L+E +++G+ P+VVT LH + +G +
Sbjct: 311 DSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCK 370
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + +N +I +LC ++ A+ L M + G P+ Y T++
Sbjct: 371 PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YCN +A+ ++ M PN TY +L+A E+ + + G+ P
Sbjct: 523 YCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPT 582
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY+ +++G CK G +E ++L E+ + P++ I + +
Sbjct: 583 LMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDI------------------ILYTIL 624
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ + GK++ A L + G P Y+ +IK L ++
Sbjct: 625 IEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKE 666
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 20 DNGYHPNVT-TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78
+ G+ N + T ++ +A + +P + + + K+ + + V+ L N+
Sbjct: 61 NGGFASNSSNTISVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMD 120
Query: 79 ERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQALCGVGKID 121
GVT V +L L N + +G P ITF +I +C GKI
Sbjct: 121 LFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIK 180
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
A+ L M G P Y+TLI L
Sbjct: 181 VAVELYNEMVRSGHEPDVISYNTLINGL 208
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K+ M + P++ YTIL A + + DG++P
Sbjct: 594 CKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPG 653
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNE 76
TY ++ G K G S+E EL +
Sbjct: 654 RTYNVMIKGLLKEGLSDEAYELFRK 678
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A ++I M G+ P+ +TY+ + +A+ + +K G+ P
Sbjct: 197 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 256
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + L E G +P VVT LIH
Sbjct: 257 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 316
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
H ++D G P +T+ ++ LC G I KA
Sbjct: 317 HRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 348
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A++V M GY P+V TYT L A ++L + D P+
Sbjct: 424 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 483
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDI------ 98
V TYTA++DG C++G S + ++LL+ E+G +PNVVT L + ID+
Sbjct: 484 VVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFT 543
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLL 127
G P +T+ +I LC G +DKA LLL
Sbjct: 544 QMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLL 577
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L A+E+L + + G +P+ Y A++DGFCK G+ + E+
Sbjct: 377 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 436
Query: 74 LNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVIQALCG 116
+ + G P+V T L ++ P +T+ +I LC
Sbjct: 437 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 496
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G+ +KAL LL LM E G P+ Y LI L
Sbjct: 497 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 529
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A+ + + M G P V TYT L +A ++ + + G +P+
Sbjct: 268 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 327
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI----------------ERGVTPNVVT------ 88
TY A++DG CK G ++ E+ + I + PNVVT
Sbjct: 328 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 387
Query: 89 -------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ H H ++D G P I ++ +I C GKID A + M + G +P
Sbjct: 388 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 447
Query: 138 SRTLYDTLIKKL 149
S Y +LI ++
Sbjct: 448 SVHTYTSLIDRM 459
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLK 48
YCN+ D+ A K+++ M G P Y I + ++ + + L
Sbjct: 122 YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLA 181
Query: 49 PDVYTYTAVMDGF----CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+ + F C VG+ ++ +L+ E + +G P+ T
Sbjct: 182 ANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPD------------------T 223
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++ VI LC K++KA LL M G P Y LI
Sbjct: 224 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 265
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
+++I+ M G +PN + + L AY++L + G P Y +
Sbjct: 97 KRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGS 156
Query: 61 FCKVGR--SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
C + S ++++L + + N V N +++ + R LCGVG
Sbjct: 157 ICGQEKLPSPDLLDLAEKIYGEMLAANCVL-----NKVNVANFAR---------CLCGVG 202
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K DKA L+ M G +P + Y +I L
Sbjct: 203 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 233
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 26/117 (22%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
+L +++ G P Y ++D F K GR MEL E +E
Sbjct: 609 ILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME------------------ 650
Query: 98 IGHIPRTITFNN-----VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P ++ +N +IQALC ++++A L M G +P +++ LIK L
Sbjct: 651 ---VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGL 704
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + + M G +P++ TY L A E+L + + G P
Sbjct: 234 FCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPV 293
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG KVG++++ +LL+E +G+ P+++T L H
Sbjct: 294 LITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFH 353
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P IT+N ++ LC K D+A+ L M + G P+ Y LI+ L
Sbjct: 354 DLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGL 409
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A K++ M G P+V T+ IL A ++L + G P+
Sbjct: 165 CSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNS 224
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y ++ GFCK + +E L + RG P++VT + L+
Sbjct: 225 LSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQ 284
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P IT+N VI L VGK D+A LL M G P Y +L+ L ++
Sbjct: 285 LSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSRE 342
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI 90
+A ++ +++ G PDV TY ++ G C GR + +LL + + RG +P+VVT LI
Sbjct: 137 KATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILI 196
Query: 91 H-------LHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ L ID+ G P ++++N ++ C K+++A+ L M G
Sbjct: 197 NFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCY 256
Query: 137 PSRTLYDTLIKKL 149
P Y+TL+ L
Sbjct: 257 PDIVTYNTLLTAL 269
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI 90
E + L ++ G PD+ T+++ GFCK+G++ + ++ + G P+V+T LI
Sbjct: 102 EGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLI 161
Query: 91 H--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L +++ G P +TFN +I LC G + +A+ +L M +HG
Sbjct: 162 SGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCT 221
Query: 137 PSRTLYDTLI 146
P+ Y+ L+
Sbjct: 222 PNSLSYNPLL 231
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 46/119 (38%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A K++D M G P++ TY+ L EA + +++ G+KP+ TY A+M
Sbjct: 312 QAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIM 371
Query: 59 DGFCKV-----------------------------------GRSNEVMELLNEAIERGV 82
G CK G + E +ELLNE RGV
Sbjct: 372 LGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ + E + ++ ++ GL+P+V TYT ++D FCK G +L + G TPNVVT
Sbjct: 238 FRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTF 297
Query: 90 IHL----------HNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
L H+ +D+ G P T+++N +I+ LC VG + A +L M +
Sbjct: 298 TALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQ 357
Query: 133 HGKIPSRTLYDTLI 146
HG P+ Y TLI
Sbjct: 358 HGCFPNVRTYSTLI 371
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 17 YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
+M G+ P+ +Y IL A +L +++ G P+V TY+ ++DGF K G
Sbjct: 319 WMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAG 378
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHNV-------------IDIGHI----PRTITFN 108
+ + N+ G PNVV ++ +V ID + P T+TFN
Sbjct: 379 DLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFN 438
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I++LC ++ +AL + M HG +P+ Y+ LI L
Sbjct: 439 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGL 479
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N ARK++D M G P+ TY + EA E+L + P
Sbjct: 170 CQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLA-----AMPPVA 224
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
+Y A++ C+ R EV ++++ + RG+ PNV+T L
Sbjct: 225 ASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILAR 284
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +TF +++ L G++ AL + M G PS Y+ LI+ L
Sbjct: 285 MVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGL 339
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 23/170 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +N V D M +G HPNV TY +L A +ML + G PD
Sbjct: 135 CGENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDD 194
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----IHLHNVIDI-------G 99
TY ++ CK+ R +E E+L + N + L + V + G
Sbjct: 195 VTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRG 254
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT+ ++ A C G++ A +L M G P+ + L++ L
Sbjct: 255 LQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGL 304
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A V M +G PN TY L +A M+ +++ G++ +
Sbjct: 445 CDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSL 504
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH-------------NV 95
TY V+ G C+ S E M + + I +G+ PN T +IH +
Sbjct: 505 VTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGA 564
Query: 96 IDIGHIPRTITFNNVIQA-LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ + R I ++ A LC K+ A+ L M G P+ ++ L++
Sbjct: 565 MNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVR 617
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K F +A+ +ID M PN T+ L A + ++ G P+
Sbjct: 409 FCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPN 468
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
TY ++ G + G + + ++ E G+ ++VT ++ +
Sbjct: 469 GRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVG 528
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+I G P TF+ +I A C G++ A +L M
Sbjct: 529 KMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAM 565
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V+ M D PN TTY L EA +L + DG +P+V
Sbjct: 298 CKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNV 357
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY+ ++D CK G E E+ N I+ G PN T L+ ++NV D+
Sbjct: 358 VTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDL 417
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN I A C G++D+A L M + G +P Y T+I L
Sbjct: 418 MVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGL 472
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHP-----NVTTYT------ILEAYEMLMNVKNDGLKPD 50
Y + + + V D M NG P N+ Y + EA ++ G PD
Sbjct: 402 YATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPD 461
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+ YT V+DG CK+GR ++ M + I+ G++P+++ TLIH +
Sbjct: 462 IVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFY 521
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P TFN++I L GK+ +A L LM G P+ Y+T+I
Sbjct: 522 EMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMI 574
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + EA +++ M +G PNV TY++L EA E+ ++ G KP+
Sbjct: 332 YLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPN 391
Query: 51 VYTYTAVMDG-----------------------------------FCKVGRSNEVMELLN 75
TY +++ G +CK GR +E N
Sbjct: 392 ASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFN 451
Query: 76 EAIERGVTPNVV-----------------TLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ ++G P++V + +ID G P ITFN +I G
Sbjct: 452 KMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHG 511
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K +KA L + M + G P+ ++++I KL
Sbjct: 512 KWEKAEELFYEMMDRGIPPNVNTFNSMIDKL 542
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + EA ++I M ++G + PNV +YT + +AY + + + G+ P
Sbjct: 226 CAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPP 285
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
+V T +V+DG CKV ++ +L + I+ + PN T LIH L
Sbjct: 286 NVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRIL 345
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T++ +I LC G +A + M + G+ P+ + Y +L+
Sbjct: 346 KEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLL 399
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 19/120 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVV---TLIH--------- 91
G PDV++YT ++ G C + E EL++ E G PNVV T+IH
Sbjct: 210 GCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVG 269
Query: 92 -----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P +T N+VI LC V +DKA +L M + +P+ T Y++LI
Sbjct: 270 KAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLI 329
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTA 56
+ +A ++ M D G PNV T+ + EA ++ + G KP+V +Y
Sbjct: 513 WEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNT 572
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNNVIQALC 115
++ G+ G EVM+LL++ + G+ P VT L ++ +G P +T +I + C
Sbjct: 573 MIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCC 632
Query: 116 GVGKIDKALLLLFLM 130
G+I+ L L M
Sbjct: 633 EDGRIEDILTLFREM 647
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 30/109 (27%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAYEM------LMNVKND----------------- 45
EARK+ D M G PNV +Y T++ Y + +M + +D
Sbjct: 550 EARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLL 609
Query: 46 ------GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GLKPDV T ++D C+ GR +++ L E + + + +T
Sbjct: 610 DGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTIT 658
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A KVI M NG+ P+ +TY+ + A+ + +K G+ P
Sbjct: 463 CLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVP 522
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------L 92
DVYTYT ++D F K G + L+E + G P VV TLIH
Sbjct: 523 DVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELF 582
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P IT+ +I C G I+KA + M IP +Y + + ++
Sbjct: 583 ELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK 642
Query: 153 P 153
P
Sbjct: 643 P 643
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 29/126 (23%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
KV+ M +N PN+ YT + EAY++++ ++ G KP+V TYTA++DGF
Sbjct: 736 KVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGF 795
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K G+ ++ +EL E +G PN V T+ +I C G +D
Sbjct: 796 GKAGKVDKCLELFREMGSKGCAPNFV------------------TYTVLINHCCATGHLD 837
Query: 122 KALLLL 127
+A LL
Sbjct: 838 EAYALL 843
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L +A ++L + DG +P+ Y A++DGFCK + +E E+
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702
Query: 74 LNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
++ +E G PNV T L L +++ P + + +I L
Sbjct: 703 FHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V K D+A L+ +M E G P+ Y +I
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNVVTYTAMI 792
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR +++ MF +G PN Y L EA E+ + G P+V
Sbjct: 656 CKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNV 715
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
YTY++++D K R + V+++L++ +E PN+V + + +
Sbjct: 716 YTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLM 775
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+ +I GK+DK L L M G P+ Y LI
Sbjct: 776 MEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 79/196 (40%), Gaps = 50/196 (25%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDG 46
C+ +A +D M +G P V TYT L E +E+++ G
Sbjct: 533 CFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIA---KG 589
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNE--------------AIERGVT--PNVVT-- 88
P+V TYTA++DG+CK G + ++ I+ V PNVVT
Sbjct: 590 CFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYG 649
Query: 89 -----LIHLHNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L H V D G P TI ++ +I C K+D+A + M EH
Sbjct: 650 ALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEH 709
Query: 134 GKIPSRTLYDTLIKKL 149
G P+ Y +LI +L
Sbjct: 710 GYNPNVYTYSSLIDRL 725
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M PNV TY IL +L + +G P
Sbjct: 319 CEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSY 378
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-VVTLIHLHNVIDIGHIPRTITFN-- 108
+ +++ +CK + +LL + + P VV I + ++ G +P +TF
Sbjct: 379 TIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELA 438
Query: 109 -----------------NVI---QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
NV+ + LCG GK +KA ++ M +G +P + Y +I
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVI 496
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 65/214 (30%), Gaps = 69/214 (32%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
YC +DF A K++ M P Y IL
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLS 447
Query: 34 ------------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+AY+++ + +G PD TY+ V+ C R
Sbjct: 448 AGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVEN 507
Query: 70 VMELLNEAIERGVTPNVVT-------------LIHLHNVIDI----GHIPRTITFNNVIQ 112
L E GV P+V T + HN +D G P +T+ +I
Sbjct: 508 AFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIH 567
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
A K+ A L LM G P+ Y LI
Sbjct: 568 AYLKAKKVSVANELFELMIAKGCFPNVITYTALI 601
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 14/126 (11%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLH 93
A E L +K+ G KP TY A++ F + + + + E E G++ + TL
Sbjct: 225 ALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQ 284
Query: 94 NVIDIGH-------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
+ +G +P TI +N +I LC ++A+ L M IP+
Sbjct: 285 ALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQ 344
Query: 141 LYDTLI 146
Y L+
Sbjct: 345 TYRILL 350
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 28/152 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYE--------MLMNVKNDGLKPDVYT 53
C EA +++ M + +V++Y ++E Y+ +L V+ +G P +
Sbjct: 831 CATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILL 890
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-----VTLIH--------------LHN 94
Y ++D F K GR +EL E I ++ +LI+ ++
Sbjct: 891 YKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYD 950
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+I G IP TF +++ L V + ++AL L
Sbjct: 951 MIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ + E + ++ ++ GL+P+V TYT ++D FCK G +L + G TPNVVT
Sbjct: 242 FRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTF 301
Query: 90 IHL----------HNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
L H+ +D+ G P T+++N +I+ LC VG + A +L M +
Sbjct: 302 TALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQ 361
Query: 133 HGKIPSRTLYDTLI 146
HG P+ Y TLI
Sbjct: 362 HGCFPNVRTYSTLI 375
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 17 YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
+M G+ P+ +Y IL A +L +++ G P+V TY+ ++DGF K G
Sbjct: 323 WMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAG 382
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHNV-------------IDIGHI----PRTITFN 108
+ + N+ G PNVV ++ +V ID + P T+TFN
Sbjct: 383 DLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFN 442
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I++LC ++ +AL + M HG +P+ Y+ LI L
Sbjct: 443 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGL 483
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N ARK++D M G P+ TY + EA E+L + P
Sbjct: 174 CQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLA-----AMPPVA 228
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
+Y A++ C+ R EV ++++ + RG+ PNV+T L
Sbjct: 229 ASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILAR 288
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +TF +++ L G++ AL + M G PS Y+ LI+ L
Sbjct: 289 MVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGL 343
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 23/159 (14%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V D M +G HPNV TY +L A +ML + G PD TY ++ C
Sbjct: 150 VYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLC 209
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTL-----IHLHNVIDI-------GHIPRTITFNNV 110
K+ R +E E+L + N + L + V + G P IT+ +
Sbjct: 210 KLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTI 269
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A C G++ A +L M G P+ + L++ L
Sbjct: 270 VDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGL 308
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A V M +G PN TY L +A M+ +++ G++ +
Sbjct: 449 CDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSL 508
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH-------------NV 95
TY V+ G C+ S E M + + I +G+ PN T +IH +
Sbjct: 509 VTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGA 568
Query: 96 IDIGHIPRTITFNNVIQA-LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ + R I ++ A LC K+ A+ L M G P+ ++ L++
Sbjct: 569 MNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVR 621
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K F +A+ +ID M PN T+ L A + ++ G P+
Sbjct: 413 FCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPN 472
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
TY ++ G + G + + ++ E G+ ++VT ++ +
Sbjct: 473 GRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVG 532
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+I G P TF+ +I A C G++ A +L M
Sbjct: 533 KMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAM 569
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A K+++ M + G PNV T+TIL EA ++L + G P+
Sbjct: 194 FCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPN 253
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY+ V++G CK G+ ++ EL R PNVVT LI H
Sbjct: 254 VVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYH 313
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ + G P IT+N++I LC ++D+A L + E G
Sbjct: 314 RMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG 354
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
CNK + E A KV+ + G+ P V + ++ AY++L + G P+
Sbjct: 159 CNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPN 218
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI-------- 101
V+T+T ++ G CK R E +LL + + G +PNVVT + N + G +
Sbjct: 219 VFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQ 278
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T N +I LC +I++A L M E G P Y++LI L
Sbjct: 279 LMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 334
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+ + D A ++++ M NG+ N +T ++EA E + D PD
Sbjct: 19 FSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPD 77
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYTA++ CK G+ +E +L E I RG P+ T+TF+ +
Sbjct: 78 VMTYTALVHALCKAGKFDEAQGMLREMIARGCAPD------------------TVTFSTL 119
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G ++A +L + + G S ++T+I++L
Sbjct: 120 IDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL 158
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 64/192 (33%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TYT L EA ML + G PD T++ ++DG CK G + +
Sbjct: 76 PDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRV 135
Query: 74 LNEAIERGV------------------------------------TPNVVTLIHLHN--- 94
L + I+RG+ TP V+ + N
Sbjct: 136 LEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFC 195
Query: 95 --------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
+I+ G +P TF +I LC ++ +A LL M G P+
Sbjct: 196 KAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVV 255
Query: 141 LYDTLIKKLDQQ 152
Y T+I L +Q
Sbjct: 256 TYSTVINGLCKQ 267
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V + M G P ++T ++ +AYE++ + G PD+ T ++
Sbjct: 556 EATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 615
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
G+CK GR++ +LL E E G+ PN T
Sbjct: 616 GGYCKSGRADLARKLLEEMTEAGLEPNDTT 645
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ M PNV T+ IL EA ++ ++ G PD+
Sbjct: 265 CKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDI 324
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++DG CK + +E +L E GV+ +T++ +
Sbjct: 325 ITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA-----------------ANAVTYSTLF 367
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+G++ A + ++ + G P Y +LI
Sbjct: 368 HGYAALGRMADACRIFSMLVDKGFSPDLATYTSLI 402
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT--ILE---------AYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ + D G+ P++ TYT ILE E++ + + G P V T +AV+
Sbjct: 378 DACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVL 437
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDI--- 98
G + + ++L + RG T + + L L VID
Sbjct: 438 GGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDR 497
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P + + ++++LC VG+ D A LL M E G + + Y+ L+ L +
Sbjct: 498 KFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSR 550
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
L E +++ ++ P A+++ C+VGR+++ +LL++ ERG V + L
Sbjct: 485 LAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGL 544
Query: 93 -----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
++ G P T N VI LC K+D A L+ M + G
Sbjct: 545 LSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGC 604
Query: 136 IPSRTLYDTLI 146
P +TLI
Sbjct: 605 CPDIETCNTLI 615
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-VVTLIHLHNVIDIGHI------ 101
P+ +TY ++ GF G + ++LL E G N VV + + D G +
Sbjct: 7 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ ++ ALC GK D+A +L M G P + TLI L
Sbjct: 67 FRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 26 NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
N TY+ L +A + + + G PD+ TYT+++ +CK R+ EV+EL+
Sbjct: 359 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 418
Query: 75 NEAIERGVTPNVVTLIH-LHNVIDIGHIPRTIT----------------FNNVIQALCGV 117
E +G P V TL L + + H R I +N V++ +
Sbjct: 419 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 478
Query: 118 GKIDKALLLLFLMYEHGKI---PSRTLYDTLIKKLDQ 151
K +KAL +L + + PS + D L++ L Q
Sbjct: 479 SKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQ 515
>gi|356509834|ref|XP_003523650.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 472
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 23/165 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT---ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
+C ARKV D M PN+ TY + EA +M+ ++ +GLK DV T T+++
Sbjct: 206 FCKVGKVESARKVFDEM---RCEPNIVTYNTGEVDEARKMMSRMRLNGLKDDVATNTSLL 262
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDIGHI 101
GFC VG+S+E ++ L E + RG+ P+V ++ L ++ G
Sbjct: 263 KGFCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCKIRKPSEAVLLLREMVVRGVK 322
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +FN V + L GKID+ L LL M + G P+ Y T+I
Sbjct: 323 PNVSSFNAVFRVLVDEGKIDEGLHLLKQMPKMGCSPNFLSYCTVI 367
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI- 105
L+PDVYTYT ++ GFCKVG+ ++ +E PN+VT +N ++ + +
Sbjct: 192 LEPDVYTYTTMIRGFCKVGKVESARKVFDEM---RCEPNIVT----YNTGEVDEARKMMS 244
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
T ++++ C VGK D+A+ L M G P Y ++ +
Sbjct: 245 RMRLNGLKDDVATNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNE 299
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + ++ M G +P++ TY + A E+L + + G P
Sbjct: 166 FCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPV 225
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG KVG++++ +ELL+E +G+ P+V+T L H
Sbjct: 226 LITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFH 285
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+V G P T+N+++ LC + D+A+ L M G P+ Y LI+ + +
Sbjct: 286 DVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANE 344
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A K++D M G P+V TY +L EA + L ++ + G +P+V
Sbjct: 27 CAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNV 86
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI--- 98
T+ ++ C GR + +LL E + +G +P+VVT LI+ L IDI
Sbjct: 87 ITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEK 146
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P ++++N ++ C K+D+A+ L +M G P Y+T++ L
Sbjct: 147 MPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTAL 201
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 42/177 (23%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+V+D + +P+V TYTIL +A ++L + + G KPDV TY +++G
Sbjct: 2 EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI---------------------DIGH 100
CK GR +E ++ LN G PNV+T HN+I G
Sbjct: 62 CKEGRLDEAIKFLNSMPSYGSQPNVIT----HNIILRSMCSTGRWMDAEKLLTEMVRKGC 117
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI------KKLDQ 151
P +TFN +I LC G + +A+ +L M HG P+ Y+ L+ KK+D+
Sbjct: 118 SPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDR 174
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A K++ M G P+V T+ IL A ++L + G P+
Sbjct: 97 CSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNS 156
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+Y ++ GFCK + + ++ L + RG P++VT + L+
Sbjct: 157 LSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQ 216
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P IT+N VI L VGK D+A+ LL M G P Y +LI L ++
Sbjct: 217 LSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSRE 274
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 46/119 (38%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++ M G P+V TY+ L EA + +V+ G+KP+ +TY ++M
Sbjct: 244 QAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIM 303
Query: 59 DGFCKV-----------------------------------GRSNEVMELLNEAIERGV 82
G CK G + E +ELLNE RGV
Sbjct: 304 FGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGV 362
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A KVI M NG+ P+ +TY+ + A+ + +K G+ P
Sbjct: 463 CLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVP 522
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------L 92
DVYTYT ++D F K G + L+E + G P VV TLIH
Sbjct: 523 DVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELF 582
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P IT+ +I C G I+KA + M IP +Y + + ++
Sbjct: 583 ELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK 642
Query: 153 P 153
P
Sbjct: 643 P 643
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L +A ++L + DG +P+ Y A++DGFCK + +E E+
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702
Query: 74 LNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
++ +ERG PNV T L L +++ P + + +I L
Sbjct: 703 FHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V K D+A L+ +M E G P+ Y +I
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNVVTYTAMI 792
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 29/126 (23%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
KV+ M +N PN+ YT + EAY++++ ++ G KP+V TYTA++DGF
Sbjct: 736 KVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGF 795
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K G+ ++ +EL E +G PN V T+ +I C G +D
Sbjct: 796 GKAGKVDKCLELFREMGSKGCAPNFV------------------TYTVLINHCCATGHLD 837
Query: 122 KALLLL 127
+A LL
Sbjct: 838 EAYALL 843
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR +++ MF +G PN Y L EA E+ + G P+V
Sbjct: 656 CKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNV 715
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
YTY++++D K R + V+++L++ +E PN+V + + +
Sbjct: 716 YTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLM 775
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+ +I GK+DK L L M G P+ Y LI
Sbjct: 776 MEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 45/166 (27%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-EAY-------------------------EMLMNVKN 44
A ++ + M G PNV TYT L + Y +M +KN
Sbjct: 578 ANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN 637
Query: 45 D-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
+ KP+V TY A++DG CK + + +LL G PN
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPN------------------ 679
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TI ++ +I C K+D+A + M E G P+ Y +LI +L
Sbjct: 680 TIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRL 725
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M PNV TY IL +L + +G P
Sbjct: 319 CEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSY 378
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-VVTLIHLHNVIDIGHIPRTITFN-- 108
+ +++ +CK + +LL + + P VV I + ++ G +P +TF
Sbjct: 379 TIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELA 438
Query: 109 -----------------NVI---QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
NV+ + LCG GK +KA ++ M +G +P + Y +I
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVI 496
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 65/214 (30%), Gaps = 69/214 (32%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
YC +DF A K++ M P Y IL
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLS 447
Query: 34 ------------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+AY+++ + +G PD TY+ V+ C R
Sbjct: 448 AGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVEN 507
Query: 70 VMELLNEAIERGVTPNVVT-------------LIHLHNVIDI----GHIPRTITFNNVIQ 112
L E GV P+V T + HN +D G P +T+ +I
Sbjct: 508 AFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIH 567
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
A K+ A L LM G P+ Y LI
Sbjct: 568 AYLKAKKVSVANELFELMIAKGCFPNVITYTALI 601
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 25/144 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYE--------MLMNVKNDGLKPDVYT 53
C EA +++ M + +V++Y ++E Y+ +L V+ +G P +
Sbjct: 831 CATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILL 890
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113
Y ++D F K GR +EL E I ++ + + ++I +
Sbjct: 891 YKVLIDNFVKAGRLEVALELHKEVISASMSMTA----------------KKNLYTSLIYS 934
Query: 114 LCGVGKIDKALLLLFLMYEHGKIP 137
KID A L + M G IP
Sbjct: 935 FSYASKIDHAFELFYDMIRDGVIP 958
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 14/126 (11%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLH 93
A E L +K+ G KP TY A++ F + + + + E E G++ + TL
Sbjct: 225 ALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQ 284
Query: 94 NVIDIGH-------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
+ +G +P TI +N +I LC ++A+ L M IP+
Sbjct: 285 ALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQ 344
Query: 141 LYDTLI 146
Y L+
Sbjct: 345 TYRILL 350
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A +V+D + + P V TYTIL EA ++L + + GL+PD
Sbjct: 191 FCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPD 250
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
YTY V++G CK G + E L+ + G V T I L ++++ G
Sbjct: 251 RYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMS 310
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT++ +I ALC GKID+A +L +M E P YD LI L
Sbjct: 311 DMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISAL 366
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVY 52
C + E+ + +M + GY P+V T L E +M + KPDV+
Sbjct: 88 CKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHGKPDVF 147
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI---------- 101
Y AV+ GFCK R + ++L+ +RG P+VVT I + N G +
Sbjct: 148 AYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQL 207
Query: 102 ------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+ +I+A G ID+A+ LL M G P R Y+ ++
Sbjct: 208 LKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVV 258
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ + K++ M G PN TY+ L EA +L +K L PD Y
Sbjct: 298 NEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGY 357
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
+Y ++ C+ G+ + +E L++ +I GH+P +++N+++
Sbjct: 358 SYDPLISALCREGKVDLAIEFLDD------------------MISGGHLPDILSYNSILA 399
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+LC G D+AL + + E G P+ Y+TL L
Sbjct: 400 SLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGAL 436
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + + + + G PN +Y L A M++ + ++G+ PD
Sbjct: 402 CKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDE 461
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ C+ G ++ +ELL + E P I++N V+
Sbjct: 462 ITYNSLISCLCRDGLVDQAIELLVDMFESEKCQ-----------------PTVISYNTVL 504
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC V +I A+ +L M G +P+ T Y LI+
Sbjct: 505 LGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQ 540
>gi|224131366|ref|XP_002328521.1| predicted protein [Populus trichocarpa]
gi|222838236|gb|EEE76601.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N EA+KV+D M GY P V +Y IL EA +L + L PD
Sbjct: 51 YCLNNQMDEAQKVLDIMVGKGYAPAVHSYNILTNGNCKRRRLDEAKRLLSKMSEKELTPD 110
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
TY+ +M GFC+VGR E + L NE G+ PN++T + L
Sbjct: 111 TVTYSTLMQGFCQVGRPQEALNLFNEMCSSGLLPNLMTCLKL 152
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 35/154 (22%)
Query: 25 PNVTTYTIL------EAYEMLM-NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
PN T+TIL E + + +G +P+VYTY AVM G+C + +E ++L+
Sbjct: 8 PNTVTFTILVDGLCNEGINCVFETMTEEGAEPNVYTYNAVMGGYCLNNQMDEAQKVLDIM 67
Query: 78 IERGVTPNVVTLIHLHNVIDIGH---------------------IPRTITFNNVIQALCG 116
+ +G P V H +N++ G+ P T+T++ ++Q C
Sbjct: 68 VGKGYAPAV----HSYNILTNGNCKRRRLDEAKRLLSKMSEKELTPDTVTYSTLMQGFCQ 123
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
VG+ +AL L M G +P+ T +K LD
Sbjct: 124 VGRPQEALNLFNEMCSSGLLPNLM---TCLKLLD 154
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ +A ++D M G PNV TYT+L +A +L ++ G P++
Sbjct: 154 CDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNI 213
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY +++G C+ GR ++ ELLN G P+ V+ L
Sbjct: 214 VTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAE 273
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ +P +TF+ +I+ C G +++A+ +L M EHG + TL + +I + +Q
Sbjct: 274 MMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQ 331
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN A +++ M PNV T+ +L EA E++ + G P++
Sbjct: 466 CNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNL 525
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY ++DG K S + +ELL+ + +GV+P+V+T + H
Sbjct: 526 ITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHV 585
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V DIG P+ + +N ++ LC +ID A+ M +G +P+ + Y LI+ L +
Sbjct: 586 VQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHE 643
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F +A V+D M G PN+ TY ++ +A E+L + + G +PD
Sbjct: 189 CRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDT 248
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+YT ++ G C R ++V EL E +E+ PN VT LI L
Sbjct: 249 VSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQ 308
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G T N VI ++C G++D A LL M +G P Y T++K L
Sbjct: 309 MTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGL 363
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V++ M ++G N T I+ +A+++L ++ + G PD
Sbjct: 293 FCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPD 352
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YT V+ G C+ R ++ ELLNE + PN +TFN
Sbjct: 353 TISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPN------------------EVTFNTF 394
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G I++A++L+ M EHG Y+ L+
Sbjct: 395 ICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALV 430
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 32/159 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC AR++I M P+ TYT + +A +L ++ G +P+
Sbjct: 121 YCRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPN 177
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT +++ C+ + M +L+E +G TPN+V T+N +
Sbjct: 178 VVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIV------------------TYNVI 219
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +C G++D A LL + +G P Y TL+K L
Sbjct: 220 INGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGL 258
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A +I+ M ++G V TY L A E+ ++ KP+
Sbjct: 399 CQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNT 455
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C R + EL+ E + PNVV TFN ++
Sbjct: 456 ITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVV------------------TFNVLV 497
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G +++A+ L+ M EHG P+ Y+TL+
Sbjct: 498 SFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLL 532
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHN 94
DG PDVY T ++ C+ GR+++ +L A G +V TL+ HL
Sbjct: 70 DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 129
Query: 95 VID-IGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IG + P T+ +I+ LC G++ AL LL M G P+ Y L++ +
Sbjct: 130 ARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAM 188
>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKN----------DGLKPDV 51
C KND A KV+D M G PNV TYT IL Y ++ N G PD
Sbjct: 212 CKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDA 271
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYT +M+G+C+ GR + ++L+++ E GV PN VT ++ L +
Sbjct: 272 TTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDD 331
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ ++P + VI LC GKI++A L M + +P + TLI L ++
Sbjct: 332 MLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKE 389
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 29/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ D A KV +FD G+ P+ TTYTIL +A +++ ++ +G++P+
Sbjct: 246 YSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPN 305
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHI-------- 101
TY +++ +CK ++ E LL++ +ER P+ + +V+ + G I
Sbjct: 306 EVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWK 365
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + +I LC GK+ +A LF +E G IPS Y+TLI
Sbjct: 366 RMLKKNCMPDNAIMSTLIHWLCKEGKVWEA-RKLFGEFERGAIPSLLTYNTLI 417
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 14/138 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +EARK+ F+ G P++ TY L EA ++ ++ G KP+
Sbjct: 387 CKEGKVWEARKLFGE-FERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNA 445
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY ++ GF K+G + E + +L E ++ PN T L + ++ + + V+
Sbjct: 446 FTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAIL--IEELCKMGMEGEVDKVV 503
Query: 112 QALCGVGKIDKALLLLFL 129
G +D LFL
Sbjct: 504 SMAMASGGVDSDSWDLFL 521
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 36 YEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------ 88
+ M N ++ G+ P+V+T ++ CK +++L+E G+ PNVVT
Sbjct: 185 HAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILG 244
Query: 89 -------LIHLHNV----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+++ + V D G +P T+ ++ C G++ A+ L+ M E+G P
Sbjct: 245 GYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEP 304
Query: 138 SRTLYDTLIK 147
+ Y +++
Sbjct: 305 NEVTYGVMVE 314
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA+ +++ M + G P++TT+ L EA ++ V GL P
Sbjct: 334 CLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSP 393
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYT+ +++ CKVG + L E G TP+ +T+N
Sbjct: 394 DVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPD------------------EVTYNT 435
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC +GK+ KAL LL M G S Y+T+I L
Sbjct: 436 LIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGL 475
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A I NG+ P+ TY A +++ + +G PD
Sbjct: 265 YCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPD 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
V+TY V++ CK G+ E +LN+ +ERG P++ TLI L +D+
Sbjct: 325 VFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLAR 384
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I ALC VG AL L M G P Y+TLI L
Sbjct: 385 QVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNL 440
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +A ++I M G PN TY I +A ++L + +G + DV
Sbjct: 511 CKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDV 570
Query: 52 YTYTAVMDGFCKVGRSNEVMELLN-------EAIERGVTPNVVTLIHLHNVID------- 97
TY +++G CK GR+ ++LL A + P + +L +N D
Sbjct: 571 VTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFRE 630
Query: 98 ---IGHIPRTITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G P T+ V + LC G G I +A L M + G IP + + L + L
Sbjct: 631 MTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGL 686
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ N EA + + G P+V T+ IL A + +K+ G PD
Sbjct: 371 CSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDE 430
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
TY ++D C +G+ + ++LL E G + VT + +
Sbjct: 431 VTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQ 490
Query: 96 IDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D+ I R ITFN +I LC +ID A L+ M G P+ Y++++
Sbjct: 491 MDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSIL 542
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 77/199 (38%), Gaps = 63/199 (31%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF- 61
V M + G P+V T+ L A ML + + G+ PD T+T +M GF
Sbjct: 172 VYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFV 231
Query: 62 ----------------------------------CKVGRSNEVMELLNEAIERGVTPNVV 87
CK+GR + + + + I G P+ +
Sbjct: 232 EEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQI 291
Query: 88 T-------------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
T + H V+D+ GH P T+N V+ LC G++++A +L M
Sbjct: 292 TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351
Query: 131 YEHGKIPSRTLYDTLIKKL 149
E G +P T ++TLI L
Sbjct: 352 VERGCLPDITTFNTLIVAL 370
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G+KPDV T+ +M C+ + + +L E GV P+ T L
Sbjct: 180 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAA 239
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G P +T N +I C +G+++ AL + +G P + Y+T +
Sbjct: 240 LRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNG 299
Query: 149 LDQ 151
L Q
Sbjct: 300 LCQ 302
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I EA E+ + G+ + T+ ++DG CK R ++ +L+++ I G+ PN +T
Sbjct: 481 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNS 540
Query: 89 -LIHLHNVIDI-------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H DI G +T+ +I LC G+ AL LL M G
Sbjct: 541 ILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKG 600
Query: 135 KIPSRTLYDTLIKKL 149
+ Y+ +I+ L
Sbjct: 601 MRATPKAYNPVIQSL 615
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++ D Y +++ + + + + +E ERG+ P+VV
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVV------------------ 186
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TFN +++ALC ++ A+L+L M G P T + TL++
Sbjct: 187 TFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQ 228
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ A + M + G PNV TYT L AYE++ + ++G +P+
Sbjct: 391 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPN 450
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
+YTY AV+D CK R+ E ELLN+A G+ + VT
Sbjct: 451 IYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFC 510
Query: 90 ----------IHLHN---------------------VIDIGHIPRTITFNNVIQALCGVG 118
+ L+N V+ +G +P T+ ++I C G
Sbjct: 511 RMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEG 570
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D AL M HG +P Y +LI L
Sbjct: 571 DFDLALKYFHNMKRHGCVPDSFTYGSLISGL 601
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C K +A ++++ M NG+ PNV T+T L +A+ + + V++D KP+
Sbjct: 321 CKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPN 380
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+TYT+++ G+CK + N L + E+G+ PNV T L N GH
Sbjct: 381 VHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN----GH---------- 426
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G D+A L+ LM + G P+ Y+ +I L
Sbjct: 427 ----CKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSL 461
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 73/207 (35%), Gaps = 63/207 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +F A ++++ M D G+ PN+ TY + EAYE+L + GL+ D
Sbjct: 426 HCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEAD 485
Query: 51 VYTYTAVMD-----------------------------------GFCKVGRSNEVMELLN 75
TYT ++ FC+ + E L
Sbjct: 486 GVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQ 545
Query: 76 EAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ G+ P T L + HN+ G +P + T+ ++I LC
Sbjct: 546 LVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKS 605
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTL 145
+D+A L M + G P TL
Sbjct: 606 MVDEACKLYEAMIDRGLSPPEVTRVTL 632
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V D M G P+ +++ ++ EA L + G PD T T ++
Sbjct: 224 AENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILS 283
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
C+ G L+N AI + +ID+G P I F ++I LC G
Sbjct: 284 ALCENG-------LVNRAI-----------WYFRKMIDLGFKPNLINFTSLIDGLCKKGS 325
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +A +L M +G P+ + LI L
Sbjct: 326 IKQAFEMLEEMVRNGWKPNVYTHTALIDGL 355
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 28/151 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A K+I M G+ P+ +TY+ + +A+ + +K +G+ P
Sbjct: 434 CLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVP 493
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
VYTYT ++D FCK G + + +E + +G TPNVVT LIH
Sbjct: 494 SVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELF 553
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
++ G P +T+ +I C G+I+KA
Sbjct: 554 EMMLLEGCKPNVVTYTALIDGHCKAGQIEKA 584
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 28/155 (18%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
+N PNV TY L EA+E+L + G +P+ Y AV+DGFCK+G+
Sbjct: 609 NNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQ 668
Query: 69 EVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVI 111
+ E+ + ERG +PN+ T L L +++ P + + ++
Sbjct: 669 DAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMV 728
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC +GK D+A L+ M E G P+ Y +I
Sbjct: 729 DGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMI 763
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
+C +ARK D M G PNV TYT L E +EM++ +G
Sbjct: 505 FCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLL---EGC 561
Query: 48 KPDVYTYTAVMDGFCKVG---RSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
KP+V TYTA++DG CK G ++ ++ + IE L H + P
Sbjct: 562 KPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDH-----NNCEGPNV 616
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+ ++ LC ++ +A LL M HG P++ +YD +I
Sbjct: 617 ITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVI 658
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
KV+ M +N PNV YT + EAY++++ ++ G P+V TYTA++DGF
Sbjct: 707 KVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGF 766
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVT 88
K G+ + +EL + +G PN +T
Sbjct: 767 GKSGKIEQCLELFRDMCSKGCAPNFIT 793
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M + PNV TY IL +L + +G P+
Sbjct: 290 CEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNR 349
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP---------------------NVVTLI 90
+ +++ +CK + +L + I+ G P +++ L+
Sbjct: 350 EIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLV 409
Query: 91 H--LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+G + + +N + LCG GK D+A ++ M G +P + Y +I
Sbjct: 410 EKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVI 467
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 31/173 (17%)
Query: 3 CNKNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C +N ++ A + + + D GY P+ TTY L AY + + + D
Sbjct: 186 CCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMD 245
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
YT + CK G+ E +L++EA P+ V + LH
Sbjct: 246 RYTLSCFAYSLCKGGKCREAFDLIDEA--EDFVPDTVFYNRMVSGLCEASLFEEAMDILH 303
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ IP +T+ ++ G++ + +L +M G P+R ++++LI
Sbjct: 304 RMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLI 356
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 34/176 (19%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K ++++ M G +PN + L AY++ + G +P
Sbjct: 327 KGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLV 386
Query: 54 YTAVMDGFCKVGR--SNEVMELLNEA----IERGVTPNVVTLIHLHN------------- 94
Y + C S+++++L+ +A ++ GV N V + +
Sbjct: 387 YNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFK 446
Query: 95 ----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G +P T++ VI LC K++KA L M +G +PS Y LI
Sbjct: 447 IICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILI 502
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 33/174 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C++ D EARK + M P+V +YT + A ML ++ N G P
Sbjct: 193 CKCDRVD--EARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTP 247
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI- 98
DV TY++++DGFCK G M LL+ ++ G PN+V L H+ D+
Sbjct: 248 DVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDML 307
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +++N I LC ++ KA + M E G P+ + Y LI
Sbjct: 308 VEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 31/175 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A K++D M D G PN+ TY ++ EA +ML + G PDV
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDV 182
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY + + G CK R +E + L VTP+VV T+I+ L +
Sbjct: 183 VTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDH 239
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P +T++++I C G++++A+ LL M + G P+ Y++L+ L
Sbjct: 240 MSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGAL 294
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +ARK++ M + G P+ Y L +A++ L + + P V
Sbjct: 53 CRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTV 112
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DG CK R+ + ++LL+E ++G +PN+ T+N ++
Sbjct: 113 VTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNI------------------YTYNVIV 154
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC K+D+A +L M G P Y++ IK L
Sbjct: 155 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 192
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y DF +A K + M N P V TYT + +A ++L +++ G P+
Sbjct: 87 YSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPN 146
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVID----IG 99
+YTY +++G C+ + +E ++L E RG P+VVT L V + +
Sbjct: 147 IYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLA 206
Query: 100 HIPRT---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P T +++ VI LC G +D A +L M G P Y +LI
Sbjct: 207 RMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLI 256
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 40/186 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL--------------- 47
C +A+ V D M + G PN ++Y++L +L V DGL
Sbjct: 330 CKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSK 389
Query: 48 -------KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH------ 91
+PDV+ Y ++D CK + ++ +++ + +E+ NVVT L+H
Sbjct: 390 VLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNILVHGLCVDD 448
Query: 92 --------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
L ++D G IP +T+ ++ A+C GK AL L + G +P Y
Sbjct: 449 RLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYS 508
Query: 144 TLIKKL 149
LI L
Sbjct: 509 ALITGL 514
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ M + NV T+ IL +A ML+ + ++G PD
Sbjct: 410 HCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPD 468
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY ++D CK G+S +EL EA++ G P+VVT
Sbjct: 469 FVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVT 506
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 29/154 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V M D P+ T+ IL +A ++L +K G PD Y A++
Sbjct: 25 KASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALI 84
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G+ K + + L E ++ P VVT + N++ LC
Sbjct: 85 SGYSKAKDFGQAFKFLAEMVKNHCLPTVVT------------------YTNIVDGLCKAE 126
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ A+ LL M + G P+ Y+ +++ L ++
Sbjct: 127 RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEE 160
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ M D G+ P+ TY L A E+ G PDV
Sbjct: 445 CVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDV 504
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
TY+A++ G + E L + +ER P+ TL LH + + + PR
Sbjct: 505 VTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHRKLKLLNKPR 556
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + ARK++ M D NV TY+ + E+Y++L + G PDV
Sbjct: 92 CSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDV 151
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVVTLIHLHNVIDIG----------- 99
+ + VM GF + + E+ +E G P NV I +H + IG
Sbjct: 152 FAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSE 211
Query: 100 -------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++P ITF+ +I LC G+++KAL + M E G P++ Y TLI L
Sbjct: 212 MAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGL 268
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
GY PNV T++ L +A E+ ++ G KP+ YTYT ++ G C+ + +
Sbjct: 218 GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQA 277
Query: 71 MELLNEAIERGVTPNVVTLIHL------HNVID------------IGHIPRTITFNNVIQ 112
EL + + + P+ V L +D G P +TFN +I
Sbjct: 278 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLID 337
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C +GK+ +A L+ M G Y LI L +
Sbjct: 338 GFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSR 376
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 29/169 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-LKPDVYTYTAV 57
+A +V + M P++ TY +L +A ++ ++K + ++PD +TY +
Sbjct: 28 QALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTL 87
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGH 100
+ G C G + +LL+E ++ + NV T L ++ G
Sbjct: 88 ISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGC 147
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P FN V+Q ++KA + M E G P Y LI L
Sbjct: 148 NPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGL 196
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 33/178 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLKPD 50
C +AR++ + M P+ Y L EA ++ + GL+P
Sbjct: 269 CRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPT 328
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVIDIGH 100
+ T+ ++DGFCK+G+ EL+ E +G+ + T L +++
Sbjct: 329 IVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYK 388
Query: 101 IPRTITF-------NNVIQALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTLIK 147
R F + + LC G ID+A + + G +P+ R L ++LIK
Sbjct: 389 QMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIK 446
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K+ +A +V+ M PN+ TY +L EA E+L + G+ PD
Sbjct: 288 FCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPD 347
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIH----------LH 93
+ TY +++ FC+ + + ++ N +ERGV P+ V L+ L
Sbjct: 348 IITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLD 407
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N+ D G IP TFN++++ LC ++D+A LL +M G P+ + Y+ L+ L
Sbjct: 408 NMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGL 463
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----- 88
EA +M+ + G+ PDV TY +++DG CK R E +LL ++R V PN+VT
Sbjct: 191 EARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLI 250
Query: 89 ----------LIH--LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L H + +I G P +TFN++I C KIDKA +L LM +
Sbjct: 251 YGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCA 310
Query: 137 PSRTLYDTLIKKL 149
P+ Y+ LI L
Sbjct: 311 PNLVTYNVLISGL 323
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++I+ M +G HP+V T+ L +A E+L +K P+
Sbjct: 253 YCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPN 312
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV--------------- 95
+ TY ++ G C GR+NE ELL+E RG+ P+++T L +
Sbjct: 313 LVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQN 372
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G IP I++ + AL + D+A LL M++ G IP+ +++L++ L
Sbjct: 373 LMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGL 428
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EAR++I+ M + G P+V TY L EA ++L + ++P++
Sbjct: 184 CKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNL 243
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDIGHI 101
TY ++ G+CK G + +L+ I+ G P+VVT L ++ H+
Sbjct: 244 VTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHL 303
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N +I LC G+ ++A LL M G +P Y++LI
Sbjct: 304 MKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLI 355
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 31/156 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDG-----------LKPD 50
+C D A +++ M + G+ P+V T++ + + L N N PD
Sbjct: 115 FCKAGDMERAFQLLAEMKERGHSPDVVTHSSI--VQALCNTGNLSRAMQYFRESVECAPD 172
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ ++ G CK + +E +++ E ERG+ P+VV T+N++
Sbjct: 173 SVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVV------------------TYNSL 214
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC ++++A LL M + P+ Y+TLI
Sbjct: 215 IDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLI 250
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI---------- 101
TY ++ GFCK G +LL E ERG +P+VVT + + + G++
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRES 166
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++ FN ++ LC ++ +A ++ M E G +P Y++LI L
Sbjct: 167 VECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGL 218
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EA ++D MFD G PN+ T+ L EA +L ++ G P TY
Sbjct: 399 FDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEV 458
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH 91
++ G CK GR ++ E+L + G+ P V T++H
Sbjct: 459 LVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVH 496
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +F EAR++ M G P+V TY EAY+++ ++ GL PD
Sbjct: 443 YCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPD 502
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTYT+++DG G + +EL NE + G+ NVV T+ +
Sbjct: 503 TYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV------------------TYTVI 544
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I L G+ D+A L M + G +P +Y +LI L +
Sbjct: 545 ISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 585
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I EA + ++ G + D +T + GFC+ R E LL ERGV PNVV+
Sbjct: 379 IDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSI 438
Query: 92 LHNVIDI--------------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
L IDI G P +T+N I+ C GK+++A L+ M
Sbjct: 439 L---IDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQ 495
Query: 132 EHGKIPSRTLYDTLI 146
E G +P Y +LI
Sbjct: 496 ERGLMPDTYTYTSLI 510
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y D +++ M N NVTTYT+L EA ++ + G++PD
Sbjct: 233 YIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPD 292
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------VI 96
VY YT++++ CK G L +E ER + PN T L N V
Sbjct: 293 VYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVN 352
Query: 97 DI---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
D+ G + FN ++ C G ID+AL L +M + G
Sbjct: 353 DMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKG 393
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C K + A+ ++D + G+ P+V TY T+L Y E+L ++ + + +V
Sbjct: 199 CKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNV 258
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TYT +++ + + + E +L +E +++G+ P+V + N
Sbjct: 259 TTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDE 318
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +P T+ +I C G++ A +++ M G +R +++TL+
Sbjct: 319 MTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 370
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-- 94
E L + + G++ V ++TAV+DG CK G L++E + +G P+V+T L N
Sbjct: 174 EFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGY 233
Query: 95 --VIDIGHIPRTI-------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+ D+G + + T+ +I+ KI++A L M + G P
Sbjct: 234 IEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDV 293
Query: 140 TLYDTLI 146
+Y ++I
Sbjct: 294 YIYTSII 300
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 34/160 (21%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK--- 63
M D+G V ++T ++ A ++ + G KP V TY +++G+ +
Sbjct: 179 MVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKD 238
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTIT 106
VG NE++ L+ + + V NV T L ++ G P
Sbjct: 239 VGGVNEILSLMEKNV---VDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYI 295
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++I C G + +A +L M E +P+ Y LI
Sbjct: 296 YTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALI 335
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +F EAR++ M G P+V TY EAY+++ ++ GL PD
Sbjct: 447 YCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPD 506
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTYT+++DG G + +EL NE + G+ NVV T+ +
Sbjct: 507 TYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV------------------TYTVI 548
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I L G+ D+A L M + G +P +Y +LI L +
Sbjct: 549 ISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 589
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I EA + ++ G + D +T + GFC+ R E LL ERGV PNVV+
Sbjct: 383 IDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSI 442
Query: 92 LHNVIDI--------------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
L IDI G P +T+N I+ C GK+++A L+ M
Sbjct: 443 L---IDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQ 499
Query: 132 EHGKIPSRTLYDTLI 146
E G +P Y +LI
Sbjct: 500 ERGLMPDTYTYTSLI 514
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y D +++ M N NVTTYT+L EA ++ + G++PD
Sbjct: 237 YIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPD 296
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------VI 96
VY YT++++ CK G L +E ER + PN T L N V
Sbjct: 297 VYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVN 356
Query: 97 DI---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
D+ G + FN ++ C G ID+AL L +M + G
Sbjct: 357 DMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKG 397
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C K + A+ ++D + G+ P+V TY T+L Y E+L ++ + + +V
Sbjct: 203 CKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNV 262
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TYT +++ + + + E +L +E +++G+ P+V + N
Sbjct: 263 TTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDE 322
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +P T+ +I C G++ A +++ M G +R +++TL+
Sbjct: 323 MTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 374
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-- 94
E L + + G++ V ++TAV+DG CK G L++E + +G P+V+T L N
Sbjct: 178 EFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGY 237
Query: 95 --VIDIGHIPRTI-------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+ D+G + + T+ +I+ KI++A L M + G P
Sbjct: 238 IEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDV 297
Query: 140 TLYDTLI 146
+Y ++I
Sbjct: 298 YIYTSII 304
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 34/160 (21%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK--- 63
M D+G V ++T ++ A ++ + G KP V TY +++G+ +
Sbjct: 183 MVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKD 242
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTIT 106
VG NE++ L+ + + V NV T L ++ G P
Sbjct: 243 VGGVNEILSLMEKNV---VDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYI 299
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++I C G + +A +L M E +P+ Y LI
Sbjct: 300 YTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALI 339
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K++ +A V++ M + P+V TY L AY +L + + GL PD
Sbjct: 438 YC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH---- 100
+TYT+++D CK R E +L + ++GV PNVV L +D H
Sbjct: 497 QWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLE 556
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P ++TFN +I LC GK+ +A LL M + G P+ + LI +L
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRL 612
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M + G PN+ TYT+L +A E+L + GL P+V
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------IH-----LHNV 95
TY A+++G+CK G + ++++ R ++PN T +H L+ +
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKM 453
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +P +T+N++I C G D A LL LM + G +P + Y ++I L
Sbjct: 454 LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 29/165 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M D+ P V TYT+L EA ++ ++ G+KP+++TYT ++
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDIGHI------- 101
D C + + ELL + +E+G+ PNV+T LI+ + + +D+ +
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T T+N +I+ C + KA+ +L M E +P Y++LI
Sbjct: 426 PNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLI 469
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 63/208 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F A +++ M D G P+ TYT + EA ++ +++ G+ P+V
Sbjct: 473 CRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNV 532
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------------- 88
YTA++DG+CK G+ +E +L + + + PN +T
Sbjct: 533 VMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEK 592
Query: 89 ---------------LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
LIH ++ G P T+ IQ C G+
Sbjct: 593 MVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGR 652
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ A ++ M E+G P Y +LIK
Sbjct: 653 LLDAEDMMAKMRENGVSPDLFTYSSLIK 680
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYT 55
DF A M +G P+ TYT +L+A +M+ ++ +G+ PD++TY+
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYS 676
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDI------GHIPRTITFN 108
+++ G+ +G++N ++L + G P+ T + L +++++ G P +
Sbjct: 677 SLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMS 736
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N+++ D + LL M EH P+ Y+ LI
Sbjct: 737 NMME-------FDTVVELLEKMVEHSVTPNAKSYEKLI 767
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 79/209 (37%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
YC + EA + + + + G P+ TYT L
Sbjct: 228 YCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRN 287
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
EA ++ + +K+D P V TYT ++ C R +E + L+
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347
Query: 76 EAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVG 118
E E G+ PN+ T LI L +++ G +P IT+N +I C G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I+ A+ ++ LM P+ Y+ LIK
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIK 436
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + M G P V+T TIL AY + + G KPD
Sbjct: 578 CADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDA 637
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT + +C+ GR + +++ + E GV+P++ T++++I
Sbjct: 638 HTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL------------------FTYSSLI 679
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +G+ + A +L M + G PS+ + +LIK L
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 4 NKNDFFEAR-KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
NK++ FE + K+I ++ + + E ++ M + D + P++YTY +++G+C
Sbjct: 170 NKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYC 229
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HNVIDIGHIPRT-I 105
K+G E + +++ +E G+ P+ T L N + + R +
Sbjct: 230 KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEV 289
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++I LC +ID+A+ L M + P+ Y LIK L
Sbjct: 290 AYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 47/183 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A ++ M +NG P++ TY+ L A+++L +++ G +P
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPS 706
Query: 51 VYTYTAVMDGFC--KVGRS----------------NEVMELLNEAIERGVTPNVVTLIHL 92
+T+ +++ K G+ + V+ELL + +E VTPN + L
Sbjct: 707 QHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKL 766
Query: 93 -HNVIDIGHI-----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ ++G++ P + FN ++ C + K ++A ++ M G
Sbjct: 767 ILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVG 826
Query: 135 KIP 137
+P
Sbjct: 827 HLP 829
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKND------ 45
C K+ +A ++ M G PNV T L A E+ N+ +D
Sbjct: 418 CMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGI 477
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------- 91
KP+ +Y+ ++DG CK GR +E EL E GV P+V+ +LIH
Sbjct: 478 NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDA 537
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ ++DIG P TF+ +I LC GK+ +A LL +M + G IP+ Y TL+K
Sbjct: 538 KYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKG 597
Query: 149 L 149
L
Sbjct: 598 L 598
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 28/155 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN +Y+I+ EA E+ +K G+ PDV +YT+++ GFC+ G+ + L
Sbjct: 481 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 540
Query: 74 LNEAIERGVTPNVVT-------------LIHLHNVIDI----GHIPRTITFNNVIQALCG 116
NE ++ GV P+V T +I + ++++ G IP T+T+ +++ LC
Sbjct: 541 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 600
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I +A L M + G +P Y TL+K L Q
Sbjct: 601 NDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 635
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 28/156 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P + +Y+I+ EA E+ +K G+ PDV +YT ++ GFC G+ + L
Sbjct: 300 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 359
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
NE ++ G+ P+V T LI L VI G IP +T +++ LC
Sbjct: 360 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCM 419
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I KA L M + G +P+ TL+K L Q
Sbjct: 420 KHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQS 455
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P + +Y+I+ EA E+ +K G+ PDV +YT+++ GFC+ G+ + L
Sbjct: 119 PTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCL 178
Query: 74 LNEAIERGVTPNVVT-------------LIHLHNVIDI----GHIPRTITFNNVIQALCG 116
NE ++ G+ +V T +I + ++++ G I +T++ +I+ LC
Sbjct: 179 FNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCM 238
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I +A L M + G P Y TL+K L Q
Sbjct: 239 KHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQ 273
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY--------------TILEAY-EMLMNVKNDGL 47
C K+ EA ++ M G P+ Y T L+ + EML + G+
Sbjct: 237 CMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGI 296
Query: 48 K--PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------- 91
K P + +Y+ ++DG CK R +E EL E +G+ P+V+ TLIH
Sbjct: 297 KCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKA 356
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ ++D+G P T + +I LC GK+ +A LL ++ + G IP TL+K
Sbjct: 357 KCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKG 416
Query: 149 L 149
L
Sbjct: 417 L 417
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + + M D G P+VTT+++L EA E+L + G P+
Sbjct: 528 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 587
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------------IHL 92
TYT ++ G C R +E +L + + G P+VVT +H
Sbjct: 588 TVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHK 647
Query: 93 HNVIDIGHI-----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D G P I+++ +I LC G+ D+A L M G IP+ Y +LI
Sbjct: 648 KMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLI 706
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + + M D G P+VTT ++L EA ++L V G PD
Sbjct: 347 FCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPD 406
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-------- 101
V T T ++ G C R ++ +L + + G PNVVT L + G+I
Sbjct: 407 VVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHK 466
Query: 102 --------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P I+++ +I LC G+ D+A L M G IP Y +LI
Sbjct: 467 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLI 525
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEA---------------YEMLMNVKNDGL 47
C K+ EA ++ M G P+ Y L EML + G+
Sbjct: 56 CMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGI 115
Query: 48 K--PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------- 91
K P + +Y+ ++DG CK R +E EL E +G+ P+V+ +LIH
Sbjct: 116 KCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKA 175
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ ++D+G T + +I LC GK+ +A LL +M + G I Y TLIK
Sbjct: 176 KCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKG 235
Query: 149 L 149
L
Sbjct: 236 L 236
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 29/118 (24%)
Query: 19 FDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
+ + P+V +Y+I+ EA E+ +K G+ P+V +YT+++ GFC+ G+
Sbjct: 656 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 715
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL 125
+ L NE +++GV N V T++ +I C G+IDKAL
Sbjct: 716 EDAKHLFNEMVDQGVQLNAV------------------TYSVMIHGFCKEGQIDKALF 755
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++PDV T ++D FCK G+ E ELL ++RG ++DI +
Sbjct: 5 GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGC------------ILDI------V 46
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T++ +I+ LC +I +A L M + G P Y TL+K L Q
Sbjct: 47 TYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQ 92
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + + M D G +VTT ++L EA E+L + G D
Sbjct: 166 FCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILD 225
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP----------------NVVTLIHLHN 94
+ TY+ ++ G C R +E L + G P N+ T + LH
Sbjct: 226 IVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQ 285
Query: 95 VI--DIGHI-----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D G P I+++ +I LC + D+A L M G +P Y TLI
Sbjct: 286 EMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLI 344
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 34/163 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P+VTT +L EA E+L + G D+ TY+ ++ G C R
Sbjct: 1 MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60
Query: 67 SNEVMELLNEAIERGVTPNVVT----------------LIHLHNVI-------DIGHIPR 103
+E +L + G P+ + +HLH + I P
Sbjct: 61 ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++++ +I LC + D+A L M G +P Y +LI
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLI 163
>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 29/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A KV M NG H N +YT L EA +L+ +K+D P+
Sbjct: 200 HCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPN 259
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LH 93
V TYT ++D C G+ +E M L + E G+ P+ LI L
Sbjct: 260 VRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLE 319
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++++ G +P IT+N +I+ C + KA+ LL M E +P Y+TLI
Sbjct: 320 HMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLITYNTLI 371
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 26/167 (15%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEML-MNVKNDGLKPDVYTYTAVMDGFCK 63
K D FE + + N ++ + ++E + L + D + PD+YT+ +++G+CK
Sbjct: 108 KGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCK 167
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT------------------- 104
+G E + + I+ G P+ T + GH R
Sbjct: 168 LGYVVEAKQYVTWLIQAGCDPDYFT----YTSFITGHCRRKEVDAAFKVFKEMTQNGCHR 223
Query: 105 --ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ +I L KID+AL LL M + P+ Y LI L
Sbjct: 224 NEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDAL 270
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDV 51
+C+ + EA ++++M +NG PNV TY L +A +L + L PD+
Sbjct: 305 FCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKNVHKAMGLLSKMLEQNLVPDL 364
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TY ++ G C G S L+E I G+
Sbjct: 365 ITYNTLIAGQCSSGIS------LSEKICNGL 389
>gi|242049502|ref|XP_002462495.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
gi|241925872|gb|EER99016.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
Length = 294
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKPDV 51
C EA+ + D G HPNV Y T+++ Y ++ +K G++P+V
Sbjct: 112 CKVGRVVEAQDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNV 171
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----LHNVIDIGHIPRTIT 106
TY+ +++G+CK+GR NE + L E + +G+ P+ ++ + ++ G +P +T
Sbjct: 172 VTYSTLVNGYCKIGRINEGLSLFTEMLHKGIEPSAISRVKEAKGLFASISGSGLVPSVVT 231
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
+N ++ L G +++A + M G P+ L + ++K L + P
Sbjct: 232 YNVMMTNLIKEGLVEEADRMFSFMENSGCDPNSRLLNHVVKDLMKIP 278
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
P+V Y+ V+DGF K G N+ +L NE ++RG++PN+V T+
Sbjct: 9 SPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLV------------------TY 50
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N+V+ ALC +D+A +L M G P R Y+ LI
Sbjct: 51 NSVVHALCKARAVDRAEAILRPMVGKGVRPDRMTYNNLI 89
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 16/137 (11%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PNV Y+ + +A ++ + G+ P++ TY +V+ CK +
Sbjct: 9 SPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDRAEA 68
Query: 73 LLNEAIERGVTPNVVT---LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
+L + +GV P+ +T LI++ + +G + ++I LC VG++ +A + L
Sbjct: 69 ILRPMVGKGVRPDRMTYNNLIYVDS--SMGQWKEAVRSCSIINNLCKVGRVVEAQDIFDL 126
Query: 130 MYEHGKIPSRTLYDTLI 146
G P+ +Y+TL+
Sbjct: 127 TVSIGVHPNVMVYNTLM 143
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN + EA+ +++ M D+G P+ TT+ L EA ++ + GL P
Sbjct: 345 CLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSP 404
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+VYT+ +++ CKVG + + L E G TP+ +T+N
Sbjct: 405 NVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPD------------------EVTYNI 446
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC GK+ KAL LL M G S Y+T+I L
Sbjct: 447 LIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGL 486
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A I +G+ P+ T++ A ++L + +G +PD
Sbjct: 276 YCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPD 335
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
VYTY+ V++ C G E ++N+ ++ G P+ TLI L +D+
Sbjct: 336 VYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAR 395
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I ALC VG A+ L M G P Y+ LI L
Sbjct: 396 ELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNL 451
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 18 MFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P+V T+ T+++A ML + + + PD T+T +M+GF + G
Sbjct: 187 MSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGS 246
Query: 67 SNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNN 109
+ L E G +P VT L ++ I G P +TF+
Sbjct: 247 IEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFST 306
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC G +D AL +L LM + G P Y T+I L
Sbjct: 307 FVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCL 346
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I EA E+ + G+ + T+ ++DG C R ++ EL+++ I G+ PN VT
Sbjct: 492 IEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNS 551
Query: 89 -LIHL---HNVIDIGHIPRTITFN----------NVIQALCGVGKIDKALLLLFLMYEHG 134
L H N+ I +T+T N +I LC + AL LL M G
Sbjct: 552 ILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKG 611
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+ +I+ L
Sbjct: 612 MKPTPKAYNPVIQSL 626
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + +A ++ M NG+ +V TY L A ++L ++ G+KP
Sbjct: 556 YCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPT 615
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y V+ + + + L E E +G P T+ V
Sbjct: 616 PKAYNPVIQSLFRGNNGRDALSLFREMTE------------------VGGPPDAFTYKIV 657
Query: 111 IQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC G G I +A L M ++G IP + + L + L
Sbjct: 658 FRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGL 697
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------- 94
+ + G++PDV T+ V+D C+ ++ + +L E V P+ T L
Sbjct: 187 MSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGS 246
Query: 95 ----------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
+ ++G P ++T N +I C +G++ AL + G P R + T
Sbjct: 247 IEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFST 306
Query: 145 LIKKLDQ 151
+ L Q
Sbjct: 307 FVNGLCQ 313
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+ M D+G P+ TY ++ EA E+ ++++ G +P +T+ ++
Sbjct: 203 EAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILI 262
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI---------- 101
D CK G+ +E LL + G P+VVT L + V D H+
Sbjct: 263 DAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 322
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T N +I LC G+I +A +L M G+ P Y+TL+
Sbjct: 323 PTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M G P+ T+ IL EA+ +L + +DG PDV TY+ ++
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLI 297
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
G C + R ++ LL + ++R P VV TLIH L ++ G
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N ++ C G+ ++A LL M G P+ Y L+ L
Sbjct: 358 PDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N F +AR++ M G P+ TY ++ EA +++ + DG PDV
Sbjct: 56 CMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDV 115
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI---------- 101
TY VMDG CK R E + L NE G TPN + HN I +G
Sbjct: 116 VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRS----HNTIILGLCQQSKIDQACQ 171
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + ++ +I L GK+++A L M + G PS Y+ +I
Sbjct: 172 VFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVI 227
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA +++ M D+G+ P+V TY+ L +A +L ++ KP
Sbjct: 265 HCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPT 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
V T ++ G CK GR E E+L+ + G +P+VV TL+H H
Sbjct: 325 VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLS 384
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P +T+ ++ LC ++ +A + M G P+ Y LI
Sbjct: 385 DMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 437
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+AR +++ M P V T L EA E+L + + G PDV TY ++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
G C+ G++ ELL++ + RG+ PNVVT L + G
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 427
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+ +I C G++D L L M G P +Y TL +L
Sbjct: 428 PNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+AR + + +G P+ YT L +A E+ ++ G P TY ++
Sbjct: 28 DARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMI 87
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D CK G E +L+ + IE G H+P +T+N V+ LC
Sbjct: 88 DASCKRGMLEEACDLIKKMIEDG------------------HVPDVVTYNTVMDGLCKSS 129
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++++ALLL M G P+R ++T+I L QQ
Sbjct: 130 RVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 163
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 46/124 (37%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR+++ M G PNV TYT L EA + +K+ G P+
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 429
Query: 51 VYTYTAVMDGFC-----------------------------------KVGRSNEVMELLN 75
++TYTA++ GFC K GRS +E+L
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILR 489
Query: 76 EAIE 79
E E
Sbjct: 490 EGRE 493
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M + G PN TYT L A+E++ +K +G P+
Sbjct: 332 YCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPN 391
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY AV+DGFCK G+ E ++L A +G+ + IT+ +
Sbjct: 392 IYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFD------------------KITYTIL 433
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I C G I AL L M E+G P Y +LI QQ
Sbjct: 434 ITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQ 475
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K F + + M + G PNV YT + +A+ +L + GLKP+V
Sbjct: 227 CEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNV 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+T ++DG CK+G + L + I+ + P T+ +I
Sbjct: 287 YTHTTLIDGLCKIGWTERAFRLFLKLIKSS-----------------SYKPNVHTYTVMI 329
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C GK+ +A +LL M E G P+ Y TLI
Sbjct: 330 GGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 364
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + D M +NG P++ YT L E+ + GL P
Sbjct: 437 HCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPT 496
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT+++ G+CKVGRS + + ++ G + +IT+ +
Sbjct: 497 KQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFAD------------------SITYGAL 538
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
I LC ++++A L M + +P TL
Sbjct: 539 ISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTL 573
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M + G PN TYT L A+E++ +K +G P+
Sbjct: 324 YCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPN 383
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY AV+DGFCK G+ E ++L A +G+ + IT+ +
Sbjct: 384 IYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFD------------------KITYTIL 425
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I C G I AL L M E+G P Y +LI QQ
Sbjct: 426 ITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQ 467
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K F + + M + G PNV YT + +A+ +L + GLKP+V
Sbjct: 219 CEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNV 278
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+T ++DG CK+G + L + I+ + P T+ +I
Sbjct: 279 YTHTTLIDGLCKIGWTERAFRLFLKLIKSS-----------------SYKPNVHTYTVMI 321
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C GK+ +A +LL M E G P+ Y TLI
Sbjct: 322 GGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 356
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + D M +NG P++ YT L E+ + GL P
Sbjct: 429 HCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPT 488
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP 102
TYT+++ G+CKVGRS + + ++ G + + + + V H P
Sbjct: 489 KQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSILMCSNNVVSATRHSP 540
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ A KV++ + + P V TYTIL EA +++ + + GLKPD+
Sbjct: 204 CSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
+TY ++ G CK G + E++ +G P+V++ I L +++ G
Sbjct: 264 FTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK 323
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I LC GKI++A+ LL LM E G P YD LI
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 375
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ + E K++ MF PNV TY+IL EA +L +K GL PD Y
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
+Y ++ FC+ GR + +E L I G P++V +N V+
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIV------------------NYNTVLA 411
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK D+AL + + E G P+ + Y+T+ L
Sbjct: 412 TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKNDGL---------KPDVY 52
C ++ E+ +++ M GY+P+V T +++ + L N+ +PDV+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNV 95
Y A+++GFCK+ R ++ +L+ + +P+ VT L L+ +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ P IT+ +I+A G +D+AL L+ M G P Y+T+I+ + ++
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N +A +V+D M + P+ TY I+ A ++L + +D +P
Sbjct: 168 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPT 227
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT +++ G +E ++L++E + RG+ P++ T+N +
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM------------------FTYNTI 269
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ +C G +D+A ++ + G P Y+ L++ L Q
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQ 311
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ + + G PN ++Y + A M++ + ++G+ PD
Sbjct: 414 CKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDE 473
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ C+ G +E ELL + P+VVT +N V+
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT------------------YNIVL 515
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C +I+ A+ +L M +G P+ T Y LI+ +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + EA +++ M +HP+V TY I+ +A +L ++ +G +P
Sbjct: 482 CLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRP 541
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79
+ TYT +++G G E MEL N+ +
Sbjct: 542 NETTYTVLIEGIGFAGYRAEAMELANDLVR 571
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 30/177 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C K + +A ++++ M G+ P V TY + EAY + K+ ++
Sbjct: 598 CKCGKVN--KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+V Y++++DGF KVGR +E +L E +++G+TPNV T L+
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCF 715
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ P +T+ +I LC V K +KA + M + G PS Y T+I L
Sbjct: 716 QSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+ R + + + + P+ +Y+IL E YE+ ++K G D Y V+
Sbjct: 535 KGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR-------------- 103
DGFCK G+ N+ +LL E +G P VVT +VID + I R
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTY---GSVIDGLAKIDRLDEAYMLFEEAKSK 651
Query: 104 -----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L+L + + G P+ +++L+ L
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDAL 702
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + GY P V +T L A +L +K+ L D+ Y +D F KVG+
Sbjct: 194 MQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGK 253
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIG-----------HIPRTITFNN 109
+ + +E G+ P+ VT + N +D +P T +N
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I GK D+A LL G IPS Y+ ++
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+ TYT + EA EM +++ + P Y Y ++ G+ G+ +E
Sbjct: 267 NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDE 326
Query: 70 VMELLNEAIERGVTPNVVT----------------LIHLHNVIDIGHIPRTITFNNVIQA 113
LL +G P+V+ + + + P T+N +I
Sbjct: 327 AYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDM 386
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK+D A L M + G P+ + ++ +L
Sbjct: 387 LCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ + G PNV T+ L EA ++K P+ TY ++
Sbjct: 675 EAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G CKV + N+ E ++G+ P+ TI++ +I L G
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPS------------------TISYTTMISGLAKAG 776
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
I +A L +G +P Y+ +I+ L
Sbjct: 777 NIAEAGALFDRFKANGGVPDSACYNAMIEGLS 808
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A K+ + M D+ N YT L + +++ ++ N PD+ M
Sbjct: 465 DAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYM 524
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
D K G + + E R P+ + LIH +++ + G +
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCV 584
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T +N VI C GK++KA LL M G P+ Y ++I L
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 30/149 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V + M + PN++TY IL A+E+ +++ GL P+V T ++
Sbjct: 361 EALRVFEEMKKDA-APNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMV 419
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D CK + +E + + + TP+ ITF ++I L VG
Sbjct: 420 DRLCKSQKLDEACAIFEQMDYKVCTPD------------------EITFCSLIDGLGKVG 461
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D A + M + + +Y +LIK
Sbjct: 462 RVDDAYKIYEKMLDSDCRTNSIVYTSLIK 490
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 30/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ G P+V Y + EA + +K D P+
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APN 376
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++D C+ G+ + EL + + G+ PNV T+ N +
Sbjct: 377 LSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTV------------------NIM 418
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ LC K+D+A + M P + +LI L +
Sbjct: 419 VDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGK 459
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
CN+ EA +++ M + G P V TYT+ EA E++ +K G +P+V
Sbjct: 279 CNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNV 338
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------- 98
TYTA++ G ++G+ + L ++ ++ G+ PN VT L N + +
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW 398
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + T T+N +I+ LC G I+KA++L M + G +P+ Y+TLI
Sbjct: 399 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A V D M G PN TY+ L EA +ML + G++P
Sbjct: 243 HCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 302
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTYT + C + E +EL+ +RG PNV T L H
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P T+T+N +I LC G+ AL + M HG + + Y+ +IK L
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL 418
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K EA ++ +F P+V TYT L A+ + + +G P+ T
Sbjct: 211 KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVT 270
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVI 96
Y+ +++G C GR +E +++L E IE+G+ P V T + + +
Sbjct: 271 YSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMK 330
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+ +I L +GK++ A+ L M + G +P+ Y+ LI +L
Sbjct: 331 KRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINEL 383
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 32/160 (20%)
Query: 18 MFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G +PN +YT L A +L ++ G P+V +Y AV++G K R
Sbjct: 504 MVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENR 563
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNN 109
+E ++ ++ +E+G+ PNV+T L H++ +P T+++
Sbjct: 564 FSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSS 623
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC GK D+A M E G P+ Y TL+ L
Sbjct: 624 LIYGLCQEGKADEAE----RMSEIGCEPTLDTYSTLVSGL 659
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + A +++D M +NG P+ TY L A + GL P+
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPN 512
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+YTA++DG K G+ + + LL E G PNV + + N
Sbjct: 513 PVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICD 572
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ G +P IT+ +I LC G+ A + M + +P+ Y +LI L Q+
Sbjct: 573 KMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 631
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A + + M G P V TY L A +L +K +G +PD
Sbjct: 419 CLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 478
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+TY ++ GF K G+ E +E G+ PN V+ L L
Sbjct: 479 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKR 538
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++G P ++N VI L + +A + M E G +P+ Y TLI L
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGL 593
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR + M ++G P++ T+ L EA +L + L PDV+TYT+++
Sbjct: 182 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C+ + + + ++ G PN ++T++ +I LC G+
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEGCDPN------------------SVTYSTLINGLCNEGR 283
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D+AL +L M E G P+ Y I L
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITAL 313
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 61/205 (29%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------EAYEMLMNV-- 42
+N F EA K+ D M + G PNV TYT L E + L N+
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 620
Query: 43 ------------KND--------GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
K D G +P + TY+ ++ G C+ GR E +L+ + ERG
Sbjct: 621 YSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGF 680
Query: 83 TPN-----VVTLIHLHNVIDIGHIPRTI-------------TFNNVIQALCGVGKIDKAL 124
P+ + + H N +++ H + + +I ALC G++++A
Sbjct: 681 CPDREIYYSLLIAHCKN-LEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQ 739
Query: 125 LLLFLMYEHGKIPSRTLYDTLIKKL 149
L M E ++ L+ L
Sbjct: 740 ALFDNMLEKEWNADEIVWTVLVDGL 764
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PN TY L A ++ ++ G + TY ++ G C G
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ M L + ++ +G +P +T+N +I G ++ A L
Sbjct: 424 IEKAMVLFEK------------------MLKMGPLPTVVTYNTLINGYLTKGNVNNAARL 465
Query: 127 LFLMYEHGKIPSRTLYDTLIKKLDQ 151
L LM E+G P Y+ L+ +
Sbjct: 466 LDLMKENGCEPDEWTYNELVSGFSK 490
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K F+EA +++ M + G+ P+ Y L A ++ +++ G + +
Sbjct: 660 CRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHL 719
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y A++ CK G+ E L + +E+ + I + ++
Sbjct: 720 SIYRALICALCKAGQVEEAQALFDNMLEKEWNAD------------------EIVWTVLV 761
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
L G++D + LL +M P+ Y L ++L +
Sbjct: 762 DGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSR 801
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C + +A ++++ M G+ PNV T+T L +A+ + + V++DG KP+
Sbjct: 305 CKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPN 364
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID 97
V+TYTA+++G+CK + N LL+ E+G+ PN T + + ++D
Sbjct: 365 VHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMD 424
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ G P T+N +I LC G +D+A LL + HG
Sbjct: 425 LMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ A ++ M + G PN TYT L AYE++ + +G P+
Sbjct: 375 YCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPN 434
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+YTY A++DG CK G +E LLN+ G+ + VT L+ +
Sbjct: 435 IYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFN 494
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P ++ +I C ++ ++ L G IP++ Y ++I
Sbjct: 495 KMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMI 547
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGY-HPNVTTYTILEAY----------EMLMNVKNDGLKPDV 51
CN EA + ++ M + G+ N T I++A+ + GL P+V
Sbjct: 235 CNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNV 294
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHLH 93
+TA+++G CK G + ELL E + RG PNV T + L
Sbjct: 295 INFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLK 354
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V G+ P T+ +I C K+++A +LL M E G +P+ Y TLI
Sbjct: 355 LVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ ++ + G P TYT + A ++ + N G PD
Sbjct: 515 FCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPD 574
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH-------------NVID 97
TY A++ G CK + ++ L + +++G++P VT + L NV+D
Sbjct: 575 SITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLD 634
Query: 98 IGHIPRTI-TFNNVIQALCGVGKIDKALLLL 127
+ I T N +++ LC GK+D A L
Sbjct: 635 RLEKRQWIRTVNTLVRKLCSEGKLDMAALFF 665
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 73/207 (35%), Gaps = 63/207 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK-- 48
+C +F A +++D M G+ PN+ TY + EAY +L V GL+
Sbjct: 410 HCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQAD 469
Query: 49 ---------------------------------PDVYTYTAVMDGFCKVGRSNEVMELLN 75
PD+++YT ++ FC+ + E L
Sbjct: 470 GVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFE 529
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
EA+ G+ P T + + + G P +IT+ +I LC
Sbjct: 530 EAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKES 589
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTL 145
K+D A L M + G P TL
Sbjct: 590 KLDDARNLYDAMMDKGLSPCEVTRLTL 616
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 21/135 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLI-- 90
A M + + G+ PD ++ ++ C +GR E LN +ERG V TLI
Sbjct: 208 AENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIID 267
Query: 91 -------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ ++++G P I F +I LC G I +A LL M G P
Sbjct: 268 AFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKP 327
Query: 138 S----RTLYDTLIKK 148
+ TL D L KK
Sbjct: 328 NVYTHTTLIDGLCKK 342
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI--- 90
EA M++ ++N GL P T V+D +G + E +RGV+P+ V+
Sbjct: 172 EAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMV 231
Query: 91 --------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L+ +++ G I T +I A C G +++ + + M E G
Sbjct: 232 VACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLA 291
Query: 137 PSRTLYDTLIKKLDQQ 152
P+ + LI L +Q
Sbjct: 292 PNVINFTALINGLCKQ 307
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A +V++ M P V TY + EAY + K+ G++ +
Sbjct: 611 FCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELN 670
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V Y++++DGF KVGR +E +L E +++G+TPNV T LI
Sbjct: 671 VIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQ 730
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ P T T++ +I LC V K +KA + M + G +P+ Y T+I L
Sbjct: 731 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGL 786
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 34/180 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C D + R + + + G+ P+V +Y+IL E + +K G
Sbjct: 540 CVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFAL 599
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR----- 103
D Y AV+DGFCK G+ ++ E+L E + V P V T ++ID + I R
Sbjct: 600 DARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVAT---YGSIIDGLAKIDRLDEAY 656
Query: 104 --------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I ++++I VG+ID+A L+L M + G P+ +++L+ L
Sbjct: 657 MLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDAL 716
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE-AIERGV----TPNVVTL 89
A++ +K+ GLKPD +YT+++ CK GR +E EL + ER V N + +
Sbjct: 271 AWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIM 330
Query: 90 IH------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ L + + G IP ++FN+++ L K+D+AL L M + + P
Sbjct: 331 GYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAE-P 389
Query: 138 SRTLYDTLIKKL 149
+ + Y+ +I L
Sbjct: 390 NSSTYNIIIDML 401
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K EA + + M + PN +TY I+ EAY + +++ GL P
Sbjct: 366 CLGKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFP 424
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
++ T ++D CK + E+ A +RG PN VT L
Sbjct: 425 NLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLF 484
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N++D GH + + ++I+ G+ + + M G P TL +T +
Sbjct: 485 ENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYM 538
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 27/176 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ + A K + G P+ +YT + EA E+ ++ + P
Sbjct: 261 CFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVP 320
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLH 93
Y Y ++ G+ G+ +LL++ ERG P+VV+ + L
Sbjct: 321 CAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLF 380
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ P + T+N +I LC GK+++A ++ M G P+ + ++ +L
Sbjct: 381 EAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRL 436
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M + GY V +T L A ++ VK L+PD+ Y +D
Sbjct: 201 ALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCID 260
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F K G + + +E +G+ P+ +++ ++I LC G+
Sbjct: 261 CFGKAGNVDMAWKFFHELKSQGLKPD------------------DVSYTSMIWVLCKAGR 302
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +A L M +P Y+T+I
Sbjct: 303 LSEAEELFGQMETERAVPCAYAYNTMI 329
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K + +A ++ + M D G++ N YT L + +++ + G +PD+
Sbjct: 474 KGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTL 533
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT------ 106
MD K G + + + G P+V + I +H + G T +
Sbjct: 534 LNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMK 593
Query: 107 ----------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N V+ C GK+DKA +L M P+ Y ++I L
Sbjct: 594 QQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGL 646
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN TY+IL +A+ ++ GL P+V TYT ++ G KVG + L
Sbjct: 739 PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSL 798
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
G TP+ + L + + H R I +V +
Sbjct: 799 FERFKANGGTPDAASFNAL--IEGMSHANRAIEAYHVFE 835
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 29/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A KV M NG H N +YT L EA +L+ +K+D P+
Sbjct: 200 HCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPN 259
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LH 93
V TYT ++D C G+ +E M L + E G+ P+ LI L
Sbjct: 260 VRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLE 319
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++++ G +P IT+N +I+ C + KA+ LL M E +P Y+TLI
Sbjct: 320 HMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLITYNTLI 371
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 33/165 (20%)
Query: 8 FFEARKVIDY------MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
FEA+K+ + M D+ PNV TYT+L EA + + G+KPD
Sbjct: 235 LFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPD 294
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------IH-----LHN 94
YT ++ FC +E LL +E G+ PNV+T +H L
Sbjct: 295 DCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKNVHKAMGLLSK 354
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+++ +P IT+N +I C G +D A LL LM E G +P++
Sbjct: 355 MLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPNQ 399
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDV 51
+C+ + EA ++++M +NG PNV TY L +A +L + L PD+
Sbjct: 305 FCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKNVHKAMGLLSKMLEQNLVPDL 364
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ G C G + LL+ E G+ PN T+
Sbjct: 365 ITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPNQRTV 402
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 26/167 (15%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEML-MNVKNDGLKPDVYTYTAVMDGFCK 63
K D FE + + N ++ + ++E + L + D + PD+YT+ +++G+CK
Sbjct: 108 KGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCK 167
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT------------------- 104
+G E + + I+ G P+ T + GH R
Sbjct: 168 LGYVVEAKQYVTWLIQAGCDPDYFT----YTSFITGHCRRKEVDAAFKVFKEMTQNGCHR 223
Query: 105 --ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ +I L KID+AL LL M + P+ Y LI L
Sbjct: 224 NEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDAL 270
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+ M D+G P+ TY ++ EA E+ ++++ G +P +T+ ++
Sbjct: 203 EAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILI 262
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI---------- 101
D CK G+ +E LL + G P+VVT L + V D H+
Sbjct: 263 DAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 322
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T N +I LC G+I +A +L M G+ P Y+TL+
Sbjct: 323 PTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M G P+ T+ IL EA+ +L + +DG PDV TY+ ++
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLI 297
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
G C + R ++ LL + ++R P VV TLIH L ++ G
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 357
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N ++ C G+ ++A LL M G P+ Y L+ L
Sbjct: 358 PDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 36/176 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N F +AR++ M G P+ TY ++ EA +++ + DG PDV
Sbjct: 56 CMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDV 115
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI---------- 101
TY VMDG CK GR E + L NE G TPN + HN I +G
Sbjct: 116 VTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRS----HNTIILGLCQQSKIDQACQ 171
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + ++ +I L GK+++A L M + G PS Y+ +I
Sbjct: 172 VFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVI 227
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 29/154 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+AR + + +G P+ YT L +A E+ ++ G P TY ++
Sbjct: 28 DARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVII 87
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D CK G E +L+ + IE G H+P +T+N V+ LC G
Sbjct: 88 DASCKRGMLEEACDLIKKMIEDG------------------HVPDVVTYNTVMDGLCKSG 129
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++++ALLL M G P+R ++T+I L QQ
Sbjct: 130 RVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 163
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA +++ M D+G+ P+V TY+ L +A +L ++ KP
Sbjct: 265 HCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPT 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
V T ++ G CK GR E E+L+ + G +P+VV TL+H H
Sbjct: 325 VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLS 384
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P +T+ ++ LC ++ +A + M G P+ Y LI
Sbjct: 385 DMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 437
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+AR +++ M P V T L EA E+L + + G PDV TY ++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
G C+ G++ ELL++ + RG+ PNVVT L + G
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 427
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+ +I C G++D L L M G P +Y TL +L
Sbjct: 428 PNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 46/124 (37%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR+++ M G PNV TYT L EA + +K+ G P+
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 429
Query: 51 VYTYTAVMDGFC-----------------------------------KVGRSNEVMELLN 75
++TYTA++ GFC K GRS +E+L
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILR 489
Query: 76 EAIE 79
E E
Sbjct: 490 EGRE 493
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKND------ 45
C K+ +A ++ M G PNV T L A E+ N+ +D
Sbjct: 574 CMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGI 633
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------- 91
KP+ +Y+ ++DG CK GR +E EL E GV P+V+ +LIH
Sbjct: 634 NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDA 693
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ ++DIG P TF+ +I LC GK+ +A LL +M + G IP+ Y TL+K
Sbjct: 694 KYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKG 753
Query: 149 L 149
L
Sbjct: 754 L 754
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 28/155 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN +Y+I+ EA E+ +K G+ PDV +YT+++ GFC+ G+ + L
Sbjct: 637 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 696
Query: 74 LNEAIERGVTPNVVT-------------LIHLHNVIDI----GHIPRTITFNNVIQALCG 116
NE ++ GV P+V T +I + ++++ G IP T+T+ +++ LC
Sbjct: 697 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 756
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I +A L M + G +P Y TL+K L Q
Sbjct: 757 NDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 791
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P + +Y+I+ EA E+ +K G+ PDV +YT+++ GFC G+ + L
Sbjct: 163 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCL 222
Query: 74 LNEAIERGVTPNVVT-------------LIHLHNVIDI----GHIPRTITFNNVIQALCG 116
NE ++ G+ P+V T +I + ++++ G I +T++ +I+ LC
Sbjct: 223 FNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCM 282
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I +A L M + G P Y TL+K L Q
Sbjct: 283 KHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQ 317
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 35/185 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA ++++ M G ++ TY+ L EA ++ M++K G +PD
Sbjct: 245 FCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPD 304
Query: 51 VYTYTAVMDGFCKVGRSNEVM----ELLNEAIERGVT---PNVVT-------------LI 90
Y +M G C+ G+ N + E+LN+ + G+ P+V T +I
Sbjct: 305 AIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVI 364
Query: 91 HLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++++ G I +T++ +I+ LC +I +A L M + G P Y TL+
Sbjct: 365 EANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLM 424
Query: 147 KKLDQ 151
K L Q
Sbjct: 425 KGLCQ 429
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 28/156 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P + +Y+I+ EA E+ +K G+ PDV +YT ++ GFC G+ + L
Sbjct: 456 PTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 515
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
NE ++ G+ P+V T LI L VI G I +T +++ LC
Sbjct: 516 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCM 575
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I KA L M + G +P+ TL+K L Q
Sbjct: 576 KHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQS 611
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + + M D G P+VTT+++L EA E+L + G P+
Sbjct: 684 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 743
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------------IHL 92
TYT ++ G C R +E +L + + G P+VVT +H
Sbjct: 744 TVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHK 803
Query: 93 HNVIDIGHI-----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D G P I+++ +I LC G+ D+A L M G IP+ Y +LI
Sbjct: 804 KMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLI 862
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 33/151 (21%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDG 60
C CN E + + GY P++ TY+I +PDV T + ++D
Sbjct: 19 CLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSI---------------RPDVTTSSMLIDI 63
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
CK G+ E ELL I+RG ++DI +T++ +I+ LC +I
Sbjct: 64 LCKEGKVIEANELLEVMIQRGC------------ILDI------VTYSTLIKGLCMEHRI 105
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+A L M + G P Y TL+K L Q
Sbjct: 106 SEATWLFMSMQKLGCRPDAITYGTLMKGLCQ 136
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEA---------------YEMLMNVKNDGL 47
C ++ EA + M G P+ TY L EML + G+
Sbjct: 100 CMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGI 159
Query: 48 K--PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------- 91
K P + +Y+ ++DG CK R +E EL E +G+ P+V+ +LIH
Sbjct: 160 KCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKA 219
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ ++D+G P T +I C GK+ +A LL +M G I Y TLIK
Sbjct: 220 KCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKG 279
Query: 149 L 149
L
Sbjct: 280 L 280
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEA---------------YEMLMNVKNDGL 47
C ++ EA + M G P+ TY L EML + G+
Sbjct: 393 CMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGI 452
Query: 48 K--PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------- 91
K P + +Y+ ++DG CK R +E EL E +G+ P+V+ TLIH
Sbjct: 453 KCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKA 512
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ ++D+G P T + +I LC GK+ +A LL ++ + G I TL+K
Sbjct: 513 KCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKG 572
Query: 149 L 149
L
Sbjct: 573 L 573
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 29/117 (24%)
Query: 19 FDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
+ + P+V +Y+I+ EA E+ +K G+ P+V +YT+++ GFC+ G+
Sbjct: 812 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 871
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
+ L NE +++GV N V T++ +I C G+IDKAL
Sbjct: 872 EDAKHLFNEMVDQGVQLNAV------------------TYSVMIHGFCKEGQIDKAL 910
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + + M D G P+VTT ++L EA ++L V G D
Sbjct: 503 FCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILD 562
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-------- 101
V T T ++ G C R ++ +L + + G PNVVT L + G+I
Sbjct: 563 VVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHK 622
Query: 102 --------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P I+++ +I LC G+ D+A L M G IP Y +LI
Sbjct: 623 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLI 681
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 40/185 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++++ M G ++ TY+ L EA + M+++ G +PD
Sbjct: 358 CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 417
Query: 52 YTYTAVMDGFCKVGRSNEVM----ELLNEAIERGVTPNVVTLIHLHNVID---------- 97
TY +M G C+ G N + E+LN+ G+ TLI +ID
Sbjct: 418 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCK-PTLISYSIIIDGLCKDRREDE 476
Query: 98 ----------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP----SRTLYD 143
G +P I++ +I C GK +KA L M + G P S L D
Sbjct: 477 ARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLID 536
Query: 144 TLIKK 148
L KK
Sbjct: 537 MLCKK 541
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL PD +T+ +++ C V R NE + + + RG P++VT P
Sbjct: 5 GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTY---------SIRPDVT 55
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T + +I LC GK+ +A LL +M + G I Y TLIK L
Sbjct: 56 TSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL 99
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M G PN T+ L +A E+L + +G PD+
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G++ E +ELLN + +G++PN + + N
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC + D+A+ M +G +P+ + Y LIK L
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M +G P+V TYT I EA +L ++ + G KP+ +YT V+ G
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C GR + EL+++ I++G PN VT L N I++ G P
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK ++AL LL +M G P+ +Y ++ L ++
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFE-ARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKP 49
Y +N FE +V+ M ++G P++ Y TI++ A E+L + + GLKP
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHN-----VIDI- 98
+V Y V+ G C R E ELL+E ++ VT N++ N VI++
Sbjct: 320 NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELL 379
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P IT+ VI C G ID+A++LL M G P+ Y ++K L
Sbjct: 380 EQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C + + +++D M PN+ T+ L Y E+L + G PD+
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
Y ++DG CK G E+LN G+ PNVV T++ L
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +TFN ++ C G +D+ + LL M HG +P Y T+I
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA +L + G + D+ +Y AV+ G C R +V EL++E + PN+V
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIV------ 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC G ++ +L M EHG P +Y T+I
Sbjct: 253 ------------TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M G PN T+ L +A E+L + +G PD+
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G++ E +ELLN + +G++PN + + N
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC + D+A+ M +G +P+ + Y LIK L
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M +G P+V TYT I EA +L ++ + G KP+ +YT V+ G
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C GR + EL+++ I++G PN VT L N I++ G P
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK ++AL LL +M G P+ +Y ++ L ++
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFE-ARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKP 49
Y +N FE +V+ M ++G P++ Y TI++ A E+L + + GLKP
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHN-----VIDI- 98
+V Y V+ G C R E ELL+E ++ VT N++ N VI++
Sbjct: 320 NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELL 379
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P IT+ VI C G ID+A++LL M G P+ Y ++K L
Sbjct: 380 EQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C + + +++D M PN+ T+ L Y E+L + G PD+
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
Y ++DG CK G E+LN G+ PNVV T++ L
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +TFN ++ C G +D+ + LL M HG +P Y T+I
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA +L + G + D+ +Y AV+ G C R +V EL++E + PN+V
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIV------ 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC G ++ +L M EHG P +Y T+I
Sbjct: 253 ------------TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M G PN T+ L +A E+L + +G PD+
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G++ E +ELLN + +G++PN + + N
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC + D+A+ M +G +P+ + Y LIK L
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M +G P+V TYT I EA +L ++ + G KP+ +YT V+ G
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C GR + EL+++ I++G PN VT L N I++ G P
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK ++AL LL +M G P+ +Y ++ L ++
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFE-ARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKP 49
Y +N FE +V+ M ++G P++ Y TI++ A E+L + + GLKP
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHN-----VIDI- 98
+V Y V+ G C R E ELL+E ++ VT N++ N VI++
Sbjct: 320 NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELL 379
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P IT+ VI C G ID+A++LL M G P+ Y ++K L
Sbjct: 380 EQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C + + +++D M PN+ T+ L Y E+L + G PD+
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
Y ++DG CK G E+LN G+ PNVV T++ L
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +TFN ++ C G +D+ + LL M HG +P Y T+I
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA +L + G + D+ +Y AV+ G C R +V EL++E + PN+V
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIV------ 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC G ++ +L M EHG P +Y T+I
Sbjct: 253 ------------TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M G PN T+ L +A E+L + +G PD+
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G++ E +ELLN + +G++PN + + N
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC + D+A+ M +G +P+ + Y LIK L
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M +G P+V TYT I EA +L ++ + G KP+ +YT V+ G
Sbjct: 377 ELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C GR + EL+++ I++G PN VT L N I++ G P
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK ++AL LL +M G P+ +Y ++ L ++
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFE-ARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKP 49
Y +N FE +V+ M ++G P++ Y TI++ A E+L + + GLKP
Sbjct: 260 YLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKP 319
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHN-----VIDI- 98
+V Y V+ G C R E ELL+E ++ VT N++ N VI++
Sbjct: 320 NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELL 379
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P IT+ VI C G ID+A++LL M G P+ Y ++K L
Sbjct: 380 EQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C + + +++D M PN+ T+ L Y E+L + G PD+
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
Y ++DG CK G E+LN G+ PNVV T++ L
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +TFN ++ C G +D+ + LL M HG +P Y T+I
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA +L + G + D+ +Y AV+ G C R +V EL++E + PN+V
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIV------ 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC G ++ +L M EHG P +Y T+I
Sbjct: 253 ------------TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
++ + E K+I M G PNV T++IL EA +L ++K GLKPD Y
Sbjct: 290 SRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAY 349
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
Y ++ GFC+ GR + E L I G P++V +N ++
Sbjct: 350 CYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIV------------------NYNTIMA 391
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK D+AL + + E G P+ + Y+TL L
Sbjct: 392 GLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSAL 428
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C++ A ++ + + + P V TYTIL A ++L + + GL+PD
Sbjct: 183 FCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPD 242
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY A++ G CK ++ ELL RG P+++T L+ +
Sbjct: 243 TLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLIS 302
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I IG P +T + +I LC GK+++A+ LL M E G P YD LI
Sbjct: 303 EMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLI 355
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 31/158 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D +A +V + + + G PNV++Y L A EM++ + N G+ P
Sbjct: 394 CRTGKAD--QALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDP 451
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D TY +++ C+ G +E +ELL + PNVV+ +N
Sbjct: 452 DEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVS------------------YNI 493
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ LC V + + A+ +L M E G P+ T Y LI+
Sbjct: 494 ILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIE 531
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N + +A +V++ + G P+V Y L A +L +K+ G PD
Sbjct: 114 FFNSRNIGKATRVMEILERYG-KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPD 172
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY ++ FC G+ + +E+ E ++ P V+T LI L
Sbjct: 173 VVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLD 232
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P T+T+N +I+ +C +DKA LL + G P Y+ L++ L
Sbjct: 233 EMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTL 288
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA +++ M Y PNV +Y I+ +A E+L + G +P
Sbjct: 462 CLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQP 521
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE 76
+ TY +++G G E MEL N
Sbjct: 522 NETTYILLIEGIGFSGLRAEAMELANS 548
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V+ MFDN P+ TYT + EA +M + +GL PD+
Sbjct: 318 CKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDI 377
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
T+ ++MD CK RS E E+ + +G P++++ L+H H+
Sbjct: 378 VTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHS 437
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G + + FN +I A G +D+ALL+ M G P+ Y T+I L
Sbjct: 438 MTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAAL 492
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 33/159 (20%)
Query: 1 CYCNKNDFFEARKVIDY-MFDNGYHPNVTTYTIL-----------EAYEMLMNV-KNDGL 47
CY + D EA ++ + M + G P+ +Y + EA +ML+ + K DG
Sbjct: 211 CYAKRTD--EALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGC 268
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
PDV +YT V+ G G ++ L NE +++GV PNVV T+
Sbjct: 269 SPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVV------------------TY 310
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N+++ ALC +DKA L+L M+++ P Y +I
Sbjct: 311 NSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMI 349
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGY-HPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
+C D +A++++ M D G PN+T ++ ++ A ++ V + G +P
Sbjct: 527 FCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRP 586
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDIGHI-- 101
D++T+ +++DG+C VG+ ++ +L+ + G P+VVT L N ID G I
Sbjct: 587 DIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILF 646
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+T++ V+ L G+ A + M E G S + Y +++ L
Sbjct: 647 REMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGL 703
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/209 (25%), Positives = 77/209 (36%), Gaps = 64/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F + + M DNG + + IL EA + ++ G+ P+
Sbjct: 422 YATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPN 481
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----------------------- 87
V TY V+ C++GR + ME L++ I G+ PN V
Sbjct: 482 VVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVS 541
Query: 88 ----------------TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGV 117
++IH + VI IG P TFN++I C V
Sbjct: 542 EMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLV 601
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK+DKA +L M G P Y TLI
Sbjct: 602 GKMDKAFGVLDAMVSAGTEPDVVTYSTLI 630
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 34 EAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-RGVTPNVVTLIH 91
EA ML++ ++ G PD ++Y V+ C RS E +++L + G +P+VV+
Sbjct: 218 EALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVS--- 274
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ VI L G+I KA L M + G +P+ Y++++ L
Sbjct: 275 ---------------YTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHAL 317
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C + +A ++++ M G+ PNV T+T L +A+ + + V++DG KP+
Sbjct: 305 CKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPN 364
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID 97
V+TYTA+++G+CK + N LL+ E+G+ PN T + + ++D
Sbjct: 365 VHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMD 424
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ G P T+N +I LC G +D+A LL + HG
Sbjct: 425 LMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGY-HPNVTTYTILEAY----------EMLMNVKNDGLKPDV 51
CN EA K ++ M + G+ N T I++A+ + GL P+V
Sbjct: 235 CNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNV 294
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHLH 93
+TA+++G CK G + ELL E + RG PNV T + L
Sbjct: 295 INFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLK 354
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V G+ P T+ +I C K+++A +LL M E G +P+ Y TLI
Sbjct: 355 LVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ A ++ M + G PN TYT L AYE++ + +G P+
Sbjct: 375 YCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPN 434
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+YTY A++DG CK G +E LLN+ G+ + VT L+ +
Sbjct: 435 IYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFN 494
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P ++ +I C ++ ++ L G IP++ Y ++I
Sbjct: 495 KMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMI 547
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ ++ + G P TYT + A ++ + N G PD
Sbjct: 515 FCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPD 574
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH-------------NVID 97
TY A++ G CK + ++ L + +++G++P VT + L NV+D
Sbjct: 575 SITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLD 634
Query: 98 IGHIPRTI-TFNNVIQALCGVGKIDKALLLL 127
+ I T N +++ LC GK+D A L
Sbjct: 635 RLEKRQWIRTVNTLVRKLCSEGKLDMAALFF 665
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 73/207 (35%), Gaps = 63/207 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK-- 48
+C +F A +++D M G+ PN+ TY + EAY +L V GL+
Sbjct: 410 HCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQAD 469
Query: 49 ---------------------------------PDVYTYTAVMDGFCKVGRSNEVMELLN 75
PD+++YT ++ FC+ + E L
Sbjct: 470 GVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFE 529
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
EA+ G+ P T + + + G P +IT+ +I LC
Sbjct: 530 EAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKES 589
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTL 145
K+D A L M + G P TL
Sbjct: 590 KLDDARNLYDAMMDKGLSPCEVTRLTL 616
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 21/135 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLI-- 90
A M + + G+ PD ++ ++ C +GR E + LN +ERG V TLI
Sbjct: 208 AENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIID 267
Query: 91 -------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ ++++G P I F +I LC G I +A LL M G P
Sbjct: 268 AFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKP 327
Query: 138 S----RTLYDTLIKK 148
+ TL D L KK
Sbjct: 328 NVYTHTTLIDGLCKK 342
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---- 89
EA M++ ++N GL T V+D +G + E +RGV+P+ V+
Sbjct: 172 EAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMV 231
Query: 90 -------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L+ +++ G I T +I A C G +++ + + M E G
Sbjct: 232 VACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLA 291
Query: 137 PSRTLYDTLIKKLDQQ 152
P+ + LI L +Q
Sbjct: 292 PNVINFTALINGLCKQ 307
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M + G PN TYT L A+E++ +K +G P+
Sbjct: 224 YCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPN 283
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY AV+DGFCK G+ E ++L A +G+ + IT+ +
Sbjct: 284 IYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFD------------------KITYTIL 325
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I C G I AL L M E+G P Y +LI QQ
Sbjct: 326 ITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQ 367
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K F + + M + G PNV YT + +A+ +L + GLKP+V
Sbjct: 119 CEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNV 178
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+T ++DG CK+G + L + I+ + P T+ +I
Sbjct: 179 YTHTTLIDGLCKIGWTERAFRLFLKLIKSS-----------------SYKPNVHTYTVMI 221
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C GK+ +A +LL M E G P+ Y TLI
Sbjct: 222 GGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 256
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + D M +NG P++ YT L E+ + GL P
Sbjct: 329 HCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPT 388
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT+++ G+CKVGRS + + ++ G + +IT+ +
Sbjct: 389 KQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFAD------------------SITYGAL 430
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
I LC ++++A L M + +P TL
Sbjct: 431 ISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTL 465
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
EAYE+L +K GL+PDVYTY ++ G CK G + V ELL I+ G P+VV TL+
Sbjct: 400 EAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLV 459
Query: 91 H-------------LHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H + +D I P T+ +N +I LC ++D A+ L M E
Sbjct: 460 HGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVP 519
Query: 137 PSRTLYDTLIKKLDQQ 152
+ T Y+ L+K L +
Sbjct: 520 ANVTTYNALLKGLQDK 535
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 30/176 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
+CN D A ++ M D+G+ P+ Y +L+A ++K G K D
Sbjct: 324 HCNNVDM--AMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLD 381
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
Y ++ GFC+ + +E ELL E G+ P+V TL+ L
Sbjct: 382 AKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLG 441
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ID G P +TF ++ C GK D+AL + M E P+ +Y+TLI L
Sbjct: 442 HMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFL 497
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 27/142 (19%)
Query: 21 NGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G PN TY L A +++ ++ +G+ P+V T ++ G C+VGR
Sbjct: 234 HGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGA 293
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
+E E +R V P +T++ + A +D A+ L
Sbjct: 294 ALEFFRE--KRTVWPEARG--------------NAVTYSTLASAFLHCNNVDMAMELFHE 337
Query: 130 MYEHGKIPSRTLYDTLIKKLDQ 151
M +HG P +Y T+I L Q
Sbjct: 338 MADHGHRPDAVMYFTMISGLTQ 359
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIHLHN 94
E+ ++++ +KPDV TY +++G CK G + +++L+ G V P++ L+
Sbjct: 152 ELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIAI---LNT 208
Query: 95 VID----IGHI------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
V+D IG + P +T+N + A C VG I A ++ M +
Sbjct: 209 VVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEK 268
Query: 133 HGKIPSRTLYDTLIKKL 149
G P+ +T+I L
Sbjct: 269 EGVAPNVITMNTIIGGL 285
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 21/118 (17%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
PD+ + +++ + G + EL + V P+VVT I L+ + GH+
Sbjct: 129 PDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKV 188
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLL--FLMYEHGKIPSRTLYDTL 145
P N V+ LC +G++ +A++ + + + HG P+ Y+ L
Sbjct: 189 LDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCL 246
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C++ D EARK + M P+V +YT + A ML + N G P
Sbjct: 161 CKCDRVD--EARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTP 215
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHI------- 101
DV TY++++DGFCK G M LL+ ++ G PN+V L + +GHI
Sbjct: 216 DVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDML 275
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +++N I LC ++ KA + M E G P+ + Y L+++L
Sbjct: 276 VEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEEL 332
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +AR+++ M + G P+ Y L +A++ L + + P V
Sbjct: 21 CRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTV 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DG CK GR+ + ++LL+E ++G +PN+ T+N ++
Sbjct: 81 VTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIY------------------TYNVIV 122
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC K+D+A +L M G P Y++ IK L
Sbjct: 123 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 160
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y DF +A K + M N P V TYT + +A ++L +++ G P+
Sbjct: 55 YSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPN 114
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVID----IG 99
+YTY +++G C+ + +E ++L E RG P+VVT L V + +
Sbjct: 115 IYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLA 174
Query: 100 HIPRT---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P T +++ VI LC G +D A +L M G P Y +LI
Sbjct: 175 RMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLI 224
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 31/175 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A K++D M D G PN+ TY ++ EA +ML + G PDV
Sbjct: 91 CKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDV 150
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY + + G CK R +E + L VTP+VV T+I+ L
Sbjct: 151 VTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQ 207
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P +T++++I C G++++A+ LL M + G P+ Y++L+ L
Sbjct: 208 MTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGAL 262
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------EAYE---- 37
C +A+ V D M + G PN ++Y++L E Y+
Sbjct: 298 CKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDI 357
Query: 38 MLMNVKNDGL----------------------KPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+L V DGL +PDV+ Y ++D CK + ++ +++
Sbjct: 358 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHK 417
Query: 76 EAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVG 118
+ +ER NVVT L+H L ++D G IP +T+ ++ A+C G
Sbjct: 418 QMLERNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCG 476
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K AL L + G +P Y LI L
Sbjct: 477 KSAAALELFEEAVKGGCVPDVVTYSALITGL 507
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D P+ T+ IL +A ++L +K G PD Y A++ G+ K
Sbjct: 1 MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ + L E ++ P VVT + N++ LC G+ A+ L
Sbjct: 61 FGQAFKFLAEMVKNHCLPTVVT------------------YTNIVDGLCKAGRTKDAVKL 102
Query: 127 LFLMYEHGKIPSRTLYDTLIKKLDQQ 152
L M + G P+ Y+ +++ L ++
Sbjct: 103 LDEMRDKGCSPNIYTYNVIVEGLCEE 128
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D AR+++ M ++G P+V TY+ + + + +L + + G KPD
Sbjct: 238 YCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPD 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT ++ G CK G+ E L+ +E G TPN V T++ V
Sbjct: 298 VVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAV------------------TYSLV 339
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC + K+D A LL + + G++ ++TL+
Sbjct: 340 FDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 18 MFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
M++ H + + EA E++ N+K+ KPDV T+ ++ G CK GR +E ++L+E
Sbjct: 56 MYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEM 115
Query: 78 IERGVTPNVVTLIHLHNVID--------------IGHIPRTITFNNVIQALCGVGKIDKA 123
G N+VT L N + + P T T+N +I C G+ID+A
Sbjct: 116 ERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRA 175
Query: 124 LLLLFLMYEH-GKIPSRTLYDTLIKKL 149
L M + G P Y LI L
Sbjct: 176 YGFLEEMKQRAGCSPDTFTYSILINGL 202
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYTY 54
C EA++V+D M +G+ N+ TY L + E ++ ++ PD TY
Sbjct: 100 CKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTY 159
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVID---------------I 98
A++ GFCK G + L E +R G +P+ T L N + I
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219
Query: 99 GH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + FN ++ C +D+A LL M EHG P Y T+I L
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGL 273
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
A E+L ++ G PDV TY+ ++DG C+ G ++ LL + + RG P+VVT
Sbjct: 246 RARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVT----- 300
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++ LC GK+ +A L+ M E G P+ Y + L
Sbjct: 301 -------------YTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGL 343
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER---GVTPNVVTLIHLHNVIDIGHIPRT-- 104
D YTY ++ C G M+LL E ++ TP++ +H + G +P
Sbjct: 17 DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFF-VHALCKSGKVPEAME 75
Query: 105 --------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+TFN +I LC G++D+A +L M G + Y+TLI L
Sbjct: 76 VVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135
Query: 151 Q 151
Sbjct: 136 S 136
>gi|357129239|ref|XP_003566273.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 550
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F A +V+ +M DNG P+V TY+ L EA +L + +G P+
Sbjct: 146 CRLQQFDAAYEVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNA 205
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
+TYT +M +C G +E +LL+ I G P+ T + L
Sbjct: 206 HTYTPIMHAYCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVDVLLEE 265
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G IP TIT++ + LC G++DK+ L+ M +G P+ + L+
Sbjct: 266 STSKGWIPDTITYSTYMDGLCRSGRVDKSFALVDRMLSNGLHPNEVTLNILL 317
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 29/168 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVM 58
A V++ M +G P+ T+L AYE++ + ++G+ PDV TY+ ++
Sbjct: 118 ALAVLEAMAADGVAPDTVACTVLVGVYACRLQQFDAAYEVVRWMTDNGVAPDVVTYSTLI 177
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT------------LIH-----LHNVIDIGHI 101
G C+ R E + +L+ +E G PN T +IH L ++I G
Sbjct: 178 CGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPIMHAYCTTGMIHEAKKLLDSMIAAGCA 237
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T T+N +I+AL VG ++ +LL G IP Y T + L
Sbjct: 238 PSTATYNVLIEALSKVGAFEEVDVLLEESTSKGWIPDTITYSTYMDGL 285
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYE----MLMNVKNDGLKPD 50
YC EA+K++D M G P+ TY +L A+E +L + G PD
Sbjct: 215 YCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVDVLLEESTSKGWIPD 274
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
TY+ MDG C+ GR ++ L++ + G+ PN VTL L N +
Sbjct: 275 TITYSTYMDGLCRSGRVDKSFALVDRMLSNGLHPNEVTLNILLNGVCRSLTAWAAKCLLE 334
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++G I +N V++ LC + + L M + G P+ + ++ L
Sbjct: 335 CSAELGWDASVINYNTVMRRLCDERRWLAVVKLFTDMSKKGIAPNSWTLNIVVHSL 390
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 14 VIDYMFDNGYHPNVTTYTILE----------AYEMLMNVKND-GLKPDVYTYTAVMDGFC 62
++D M NG HPN T IL A + L+ + G V Y VM C
Sbjct: 297 LVDRMLSNGLHPNEVTLNILLNGVCRSLTAWAAKCLLECSAELGWDASVINYNTVMRRLC 356
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGH-------------IPRTITFN 108
R V++L + ++G+ PN TL I +H++ +G + IT+N
Sbjct: 357 DERRWLAVVKLFTDMSKKGIAPNSWTLNIVVHSLCKLGKLRNALCLMGSEEFVANAITYN 416
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I L GK ++ LLL M E G P+ T Y +I L
Sbjct: 417 TLIHHLSLSGKANEVYLLLHDMIEEGIAPNETTYSLVIDCL 457
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL--NEAIERGVTPNVVTLI 90
L ++ ++ G+ P+ +T V+ CK+G+ + L+ E + +T N TLI
Sbjct: 362 LAVVKLFTDMSKKGIAPNSWTLNIVVHSLCKLGKLRNALCLMGSEEFVANAITYN--TLI 419
Query: 91 H--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H LH++I+ G P T++ VI LC K AL + E G
Sbjct: 420 HHLSLSGKANEVYLLLHDMIEEGIAPNETTYSLVIDCLCREEKFSVALSCFYRSCEDGFS 479
Query: 137 PS 138
PS
Sbjct: 480 PS 481
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 18/117 (15%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV------------ 95
+PD +T V R + +L GV P+ V L V
Sbjct: 96 RPDAACFTTVAAALSSASRPGAALAVLEAMAADGVAPDTVACTVLVGVYACRLQQFDAAY 155
Query: 96 ------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
D G P +T++ +I LC ++ +AL +L LM E G P+ Y ++
Sbjct: 156 EVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPIM 212
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 33/161 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V+D M G PNV TY L EA ++ + ++G P+V
Sbjct: 288 CKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNV 347
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y +++G+CK+ R ++ L E ++ + PN T+T+N ++
Sbjct: 348 ISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN------------------TVTYNTLM 389
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTLIKK 148
LC VG++ A+ L M HG+IP R L D L KK
Sbjct: 390 HGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKK 430
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A + D M G+ PNV TY L A +L +++ +PDV
Sbjct: 148 CVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDV 207
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI------ 101
YT+++D CK + E L ++ + +G++P++ T LIH L N+ + H+
Sbjct: 208 VVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQ 267
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + F+ V+ ALC GKI +A ++ +M G P+ Y+ L+
Sbjct: 268 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALM 319
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G P++ TYT L +L + N + PDV
Sbjct: 218 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 277
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
++ V+D CK G+ E ++++ I RGV PNVVT L+ H
Sbjct: 278 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 337
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G+ P I++N +I C + ++DKA L M + IP+ Y+TL+ L
Sbjct: 338 MVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M +G P++ TY IL EA +L ++ + PD+
Sbjct: 393 CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDI 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT V+DG C+ G ++ + +G+ PNV RT T +I
Sbjct: 453 QIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNV----------------RTYTI--MI 494
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G +D+A L M +G P Y+T+ + L Q
Sbjct: 495 NGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 534
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+ +L + GL+PD T+T ++ G C G+ + + L ++ I G PNVV
Sbjct: 121 AFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVV------- 173
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ +I LC VG + A+ LL M + P +Y ++I L
Sbjct: 174 -----------TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 217
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + G PNV TYTI+ EA ++ M + +G PD
Sbjct: 463 CRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDG 522
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + G + + ++LL E + RG + +V T
Sbjct: 523 CTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVST 559
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ A KV++ + + P V TYTIL EA +++ + + GLKPD+
Sbjct: 204 CSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
+TY ++ G CK G + E++ +G P+V++ I L +++ G
Sbjct: 264 FTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTK 323
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I LC GKI++A+ LL LM E G P YD LI
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 375
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ + E K++ MF PNV TY+IL EA +L +K GL PD Y
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
+Y ++ FC+ GR + +E L I G P++V +N V+
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIV------------------NYNTVLA 411
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK D+AL + + E G P+ + Y+T+ L
Sbjct: 412 TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKNDGL---------KPDVY 52
C ++ E+ +++ M GY+P+V T +++ + L N+ +PDV+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNV 95
Y A+++GFCK+ R ++ +L+ + +P+ VT L L+ +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ P IT+ +I+A G +D+AL L+ M G P Y+T+I+ +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N +A +V+D M + P+ TY I+ A ++L + +D +P
Sbjct: 168 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPT 227
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT +++ G +E ++L++E + RG+ P++ T+N +
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM------------------FTYNTI 269
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ +C G +D+A ++ + G P Y+ L++ L Q
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQ 311
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D A +I M NG P+ TY + EA+E+L+++++ P V TY
Sbjct: 453 DKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYN 512
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V+ GFCK R + + +L + G PN T
Sbjct: 513 IVLLGFCKAHRIEDAINVLESMVGNGCRPNETT 545
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ + + G PN ++Y + A M++ + ++G+ PD
Sbjct: 414 CKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDE 473
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ C+ G +E ELL + P+VVT +N V+
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT------------------YNIVL 515
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
C +I+ A+ +L M +G P+ T Y LI+
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIE 551
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + EA +++ M +HP+V TY I+ +A +L ++ +G +P
Sbjct: 482 CLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRP 541
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAI 78
+ TYT +++G G E MEL N+ +
Sbjct: 542 NETTYTVLIEGIGFAGYRAEAMELANDLV 570
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C DF A+KV + M N TY ++ EA+ + + GL PD
Sbjct: 253 HCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPD 312
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TY A+M+G CK R E LL+E G+ PN+V TL+ L
Sbjct: 313 AFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILK 372
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P I ++N+I+ LC +G++ +A LL M + G P Y+ L++ QQ
Sbjct: 373 EMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQ 431
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C A K++ M G P+ TY L A+E+L ++N G+ P+V
Sbjct: 394 CKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNV 453
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI---------- 101
Y+Y +++G C+ G S E LL E I G+ PN ++ + IGH
Sbjct: 454 YSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAF----MYAPLIIGHSKEGNISLACE 509
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +N++I+ L VG++++A + + G +P Y LI
Sbjct: 510 ALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLI 565
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ND+ + ++ M +G P+ Y I+ A+ +L V+ +GL PD
Sbjct: 603 YFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPD 662
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVID 97
++ Y++++ G CK+ + + LL+E + G+ P +V L NV D
Sbjct: 663 LHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFD 722
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
G +P +T+ +I C G I A L M + G P +Y+ L
Sbjct: 723 SILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVL 774
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + ++ M HP++ Y L EA E V+ GL PD +TY+ ++
Sbjct: 507 ACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIH 566
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIP 102
G+CK G + +LL + + G+ PN T L +++ G P
Sbjct: 567 GYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKP 626
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ VI+ L ++ A ++L + ++G +P +Y +LI L
Sbjct: 627 DNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGL 673
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 35/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A ++D M G P + Y L A + ++ GL P+
Sbjct: 674 CKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNC 733
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----DIGHIPRTI- 105
TYTA++DG CK G + +L E ++RG+ P+ ++NV+ D + + +
Sbjct: 734 VTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAF----VYNVLATGCSDAADLEQALF 789
Query: 106 --------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
FN ++ C GK+ + LL +M + +P+ + ++ +
Sbjct: 790 LTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEF 847
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPD 50
YC + +A +++ M ++G PN TYT +LE Y +L ++ G KPD
Sbjct: 568 YCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPD 627
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ Y V+ + +L E + G+ P++ HI ++++
Sbjct: 628 NHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDL-------------HI-----YSSL 669
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC + ++KA+ LL M + G P Y+ LI
Sbjct: 670 ISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALI 705
Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 34 EAYEMLMNVKN----DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+A E+L +K G+ PDVYTY+ ++ CK + ++ E R N VT
Sbjct: 222 DAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTY 281
Query: 90 IHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+ ++D G P T+ ++ LC ++ +A LL M
Sbjct: 282 NVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSC 341
Query: 133 HGKIPSRTLYDTLI 146
G P+ +Y TL+
Sbjct: 342 SGLKPNIVVYGTLV 355
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN+ +A +++ M G +P+ TY +L A+ +L ++ DGL D
Sbjct: 227 FCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIAD 286
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY A+++ CK GR+++ L + RG+ PN V TFN++
Sbjct: 287 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAV------------------TFNSL 328
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC GK+D A L M G P Y + I+ L
Sbjct: 329 INGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHL 367
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDVYTYTAVM 58
EA +++ MF+ G P V T T ++ AY +L +K G KP+V+TY A++
Sbjct: 165 EAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALV 224
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT--LIHLHNVIDIGHIPRTI----------- 105
GFC G+ ++ M LLN+ GV P+ VT L+ ID GHI
Sbjct: 225 QGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCID-GHIESAFRLLRLMEGDGL 283
Query: 106 -----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I ALC G+ D+A L + G P+ +++LI L
Sbjct: 284 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 332
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E ML +K G +P Y AV+D C ++ E E+L E E+G+ P VVT +
Sbjct: 130 EGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVI 189
Query: 94 N-------------VIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N V+++ G P T+N ++Q C GK+ KA+ LL M G
Sbjct: 190 NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVN 249
Query: 137 PSRTLYDTLIK 147
P Y+ LI+
Sbjct: 250 PDAVTYNLLIR 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C +A + D + G PN T+ L A++ L + + G PD
Sbjct: 298 CKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDT 357
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVI---DIGHIPRT--- 104
YTY++ ++ CK+ S E + + E +++ V P+ V I +H ++ + G + RT
Sbjct: 358 YTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGE 417
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+ ++A C G++++A +L M ++G Y+TL+
Sbjct: 418 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 469
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 33/155 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A + + M +G+ P+ T+ L A ++ + G DV
Sbjct: 22 CRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDV 81
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y A+++GFC+ GR +E +EL E + P + ++
Sbjct: 82 VSYAALIEGFCETGRIDEAVELFGEMDQ----------------------PDMHMYAALV 119
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ LC G+ ++ LL+L M E G PS Y ++
Sbjct: 120 KGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVV 154
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 45/174 (25%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G +P+V TYT + EA +LM + +G+ D Y +MDG +G+
Sbjct: 418 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 477
Query: 67 SNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI--------------------- 98
++ + +L + PN T L+ + V D+
Sbjct: 478 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLF 537
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P + T++++++ G+ ++A L+ LM E + +Y L+
Sbjct: 538 DVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALV 591
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + +A ++ M +G+ P++ +Y L +A E+ MN + P
Sbjct: 593 CFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSP 652
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELL 74
D + ++DG K G S+ E++
Sbjct: 653 DEIVWKVIIDGLIKKGHSDISREMI 677
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+ D M N + PN TY+ + EA ++ +K D + + YTA++ FC
Sbjct: 536 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 595
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
K R + L+ I+ G P++++ HL
Sbjct: 596 KSKRYLDAWVLVCSMIQHGFIPHLMSYQHL 625
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTL------ 89
+K + P+ TY+++++GF + GR+ E L++ E ++ N +VT
Sbjct: 540 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKR 599
Query: 90 -----IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL----FLMYEHGKIPSRT 140
+ + ++I G IP +++ +++ L G+ DKA + + Y +I +
Sbjct: 600 YLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKV 659
Query: 141 LYDTLIKK 148
+ D LIKK
Sbjct: 660 IIDGLIKK 667
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
CN+ EA +++ M + G P V TYT+ EA E++ +K G +P+V
Sbjct: 321 CNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNV 380
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------- 98
TYTA++ G ++G+ + L ++ ++ G+ PN VT L N + +
Sbjct: 381 QTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW 440
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + T T+N +I+ LC G I+KA++L M + G +P+ Y+TLI
Sbjct: 441 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 492
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A V D M G PN TY+ L EA +ML + G++P
Sbjct: 285 HCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 344
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTYT + C + E +EL+ +RG PNV T L H
Sbjct: 345 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 404
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P T+T+N +I LC G+ AL + M HG + + Y+ +IK L
Sbjct: 405 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL 460
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M + G +PNV +Y + EA ++ + GL P+V TYT ++D
Sbjct: 574 ALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLID 633
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIP 102
G C+ GR+ ++ ++ +R PN+ T I L + G P
Sbjct: 634 GLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAP 693
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+TF ++I +G+ID A LLL M + G P+ Y L+K L ++
Sbjct: 694 DEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKE 743
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K EA ++ +F P+V TYT L A+ + + +G P+ T
Sbjct: 253 KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVT 312
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVI 96
Y+ +++G C GR +E +++L E IE+G+ P V T + + +
Sbjct: 313 YSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMK 372
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+ +I L +GK++ A+ L M + G +P+ Y+ LI +L
Sbjct: 373 KRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINEL 425
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A + + M G P V TY L A +L +K +G +PD
Sbjct: 461 CLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 520
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN-------------- 94
+TY ++ GF K G+ E +E G+ PN V TLI H+
Sbjct: 521 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLER 580
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++G P ++N VI L + +A + M E G +P+ Y TLI L
Sbjct: 581 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGL 635
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + A +++D M +NG P+ TY L A + GL P+
Sbjct: 495 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPN 554
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+YT ++DG K G+ + + LL E G PNV + + N
Sbjct: 555 PVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICD 614
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G +P IT+ +I LC G+ A + M + +P+ Y +LI L Q+
Sbjct: 615 KMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 673
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR + M ++G P++ T+ L EA +L + L PDV+TYT+++
Sbjct: 224 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 283
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C+ + + + ++ G PN ++T++ +I LC G+
Sbjct: 284 GHCRNRNLDLAFGVFDRMVKEGCDPN------------------SVTYSTLINGLCNEGR 325
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D+AL +L M E G P+ Y I L
Sbjct: 326 VDEALDMLEEMIEKGIEPTVYTYTLPITAL 355
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PN TY L A ++ ++ G + TY ++ G C G
Sbjct: 406 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 465
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHN-------------VIDI----GHIPRTITFNN 109
+ M L + ++ G P VVT L N ++D+ G P T+N
Sbjct: 466 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 525
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ GK++ A M E G P+ Y TLI
Sbjct: 526 LVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLI 562
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-----VVTLIHL 92
+L + G +P + TY+ ++ G C+ GR E +L+ + ERG P+ + + H
Sbjct: 776 LLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHC 835
Query: 93 HNVIDIGHIPRTI-------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
N +++ H + + +I ALC G++++A L M E
Sbjct: 836 KN-LEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADE 894
Query: 140 TLYDTLIKKL 149
++ L+ L
Sbjct: 895 IVWTVLVDGL 904
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K F+EA +++ M + G+ P+ Y L A ++ +++ G + +
Sbjct: 800 CRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHL 859
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y A++ CK G+ E L + +E+ + I + ++
Sbjct: 860 SIYRALICALCKAGQVEEAQALFDNMLEKEWNAD------------------EIVWTVLV 901
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
L G++D + LL +M P+ Y L ++L +
Sbjct: 902 DGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSR 941
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C KND ARKV D M G PNV TYT ++ A + + + G PD
Sbjct: 203 CKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDA 262
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TYT +MDG+ K GR + +++++E E GV PN +T L L++
Sbjct: 263 TTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLND 322
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ +IP + VI LCG G++ +A + + + P + TLI L ++
Sbjct: 323 MLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKE 380
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 62/208 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ D A++V +FD+G+ P+ TTYTIL +A +++ ++ +G++P+
Sbjct: 237 YVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPN 296
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----------------------- 87
TY ++ G+CK +S E + LLN+ +E+ PN
Sbjct: 297 DITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWE 356
Query: 88 ---------------TLIH-------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
TLIH L N + G I +T+N +I +C +G+
Sbjct: 357 KLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGE 416
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +A L M E G +P+ Y+ LIK
Sbjct: 417 LCEAARLWDDMLEKGCVPNEFTYNMLIK 444
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 16/139 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + +EARK+ + F+ G ++ TY L EA + ++ G P+
Sbjct: 378 CKEGNIWEARKLFNE-FERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNE 436
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRTITFNNV 110
+TY ++ GF KVG++ EV++++ E +++G N T LI + ++ +G + N+
Sbjct: 437 FTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELL---NI 493
Query: 111 IQALCGVGKIDKALLLLFL 129
+ + G +D LF+
Sbjct: 494 LSMIISSGAVDFKAWNLFV 512
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC + EA +++ M + Y PN + EA +M + PD
Sbjct: 307 YCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPD 366
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ ++ CK G E +L NE ERG +++T L
Sbjct: 367 NAITSTLIHWLCKEGNIWEARKLFNE-FERGTISSLLTYNTLIAGMCEMGELCEAARLWD 425
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++ G +P T+N +I+ VGK + + ++ M + G + + + Y L++ L
Sbjct: 426 DMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGL 481
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A K+++ M + G PNV T+TIL EA ++L + G P+
Sbjct: 242 FCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPN 301
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY+ V++G CK G+ ++ EL R PNVVT LI H
Sbjct: 302 VVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYH 361
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ + G P IT+N++I LC ++D+A L + E G
Sbjct: 362 RMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG 402
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
CNK + E A KV+ + G+ P V + ++ AY++L + G P+
Sbjct: 207 CNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPN 266
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI-------- 101
V+T+T ++ G CK R E +LL + + G +PNVVT + N + G +
Sbjct: 267 VFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQ 326
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T N +I LC +I++A L M E G P Y++LI L
Sbjct: 327 LMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 382
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+ + D A ++++ M +G+ N +T ++EA E + D PD
Sbjct: 67 FSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPD 125
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYTA++ CK G+ +E +L E + +G P+ T+TF+ +
Sbjct: 126 VMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPD------------------TVTFSTL 167
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G ++A +L + + G S ++T+I++L
Sbjct: 168 IDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL 206
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 64/192 (33%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TYT L EA ML + G PD T++ ++DG CK G + +
Sbjct: 124 PDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRV 183
Query: 74 LNEAIERGV------------------------------------TPNVVTLIHLHN--- 94
L + I+RG+ TP V+ + N
Sbjct: 184 LEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFC 243
Query: 95 --------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
+I+ G +P TF +I LC ++ +A LL M G P+
Sbjct: 244 KAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVV 303
Query: 141 LYDTLIKKLDQQ 152
Y T+I L +Q
Sbjct: 304 TYSTVINGLCKQ 315
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V + M G P ++T ++ +AYE++ + G PD+ T ++
Sbjct: 604 EATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 663
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
G+CK GR++ +LL E E G+ PN T
Sbjct: 664 GGYCKSGRADLARKLLEEMTEAGLEPNDTT 693
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ M PNV T+ IL EA ++ ++ G PD+
Sbjct: 313 CKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDI 372
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++DG CK + +E +L E GV+ +T++ +
Sbjct: 373 ITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA-----------------ANAVTYSTLF 415
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+G++ A + ++ + G P Y +LI
Sbjct: 416 HGYAALGRMADACRIFSMLVDKGFSPDLATYTSLI 450
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT--ILE---------AYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ + D G+ P++ TYT ILE E++ + + G P V T +AV+
Sbjct: 426 DACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVL 485
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDI--- 98
G + + ++L + RG T + + L L VID
Sbjct: 486 GGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDR 545
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P + + ++++LC VGK D A LL M E G + + Y+ L+ L +
Sbjct: 546 KFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSR 598
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-VVTLIHL 92
EA + N P+ +TY ++ GF G + ++LL E G N VV +
Sbjct: 40 EALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLM 99
Query: 93 HNVIDIGHI---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ D G + P +T+ ++ ALC GK D+A +L M G P
Sbjct: 100 KGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAP 159
Query: 138 SRTLYDTLIKKL 149
+ TLI L
Sbjct: 160 DTVTFSTLIDGL 171
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
L E +++ ++ P A+++ C+VG++++ +LL++ ERG V + L
Sbjct: 533 LAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRL 592
Query: 93 -----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
++ G P T N VI LC K+D A L+ M + G
Sbjct: 593 LSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGC 652
Query: 136 IPSRTLYDTLI 146
P +TLI
Sbjct: 653 CPDIETCNTLI 663
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 26 NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
N TY+ L +A + + + G PD+ TYT+++ +CK R+ EV+EL+
Sbjct: 407 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 466
Query: 75 NEAIERGVTPNVVTLIH-LHNVIDIGHIPRTIT----------------FNNVIQALCGV 117
E +G P V TL L + + H R I +N V++ +
Sbjct: 467 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 526
Query: 118 GKIDKALLLLFLMYEHGKI---PSRTLYDTLIKKLDQ 151
K DKAL +L + + PS + D L++ L Q
Sbjct: 527 SKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQ 563
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
CN+ EA +++ M + G P V TYT+ EA E++ +K G +P+V
Sbjct: 279 CNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNV 338
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------- 98
TYTA++ G ++G+ + L ++ ++ G+ PN VT L N + +
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW 398
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + T T+N +I+ LC G I+KA++L M + G +P+ Y+TLI
Sbjct: 399 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 29/159 (18%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+N F EA K+ D M + G PNV TYT L A+++ +++ P++YT
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 620
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113
Y++++ G C+ G+++E LL E +G+ P+ +TF ++I
Sbjct: 621 YSSLIYGLCQEGKADEAEILLKEMERKGLAPD------------------EVTFTSLIDG 662
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+G+ID A LLL M + G P+ Y L+K L ++
Sbjct: 663 FVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKE 701
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A V D M G PN TY+ L EA +ML + G++P
Sbjct: 243 HCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 302
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTYT + C + E +EL+ +RG PNV T L H
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P T+T+N +I LC G+ AL + M HG + + Y+ +IK L
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL 418
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K EA ++ +F P+V TYT L A+ + + +G P+ T
Sbjct: 211 KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVT 270
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVI 96
Y+ +++G C GR +E +++L E IE+G+ P V T + + +
Sbjct: 271 YSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMK 330
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+ +I L +GK++ A+ L M + G +P+ Y+ LI +L
Sbjct: 331 KRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINEL 383
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G +PN +YT L A +L ++ G P+V +Y AV++G K R
Sbjct: 504 MVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENR 563
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNN 109
+E ++ ++ +E+G+ PNV+T L H++ +P T+++
Sbjct: 564 FSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSS 623
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC GK D+A +LL M G P + +LI
Sbjct: 624 LIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLI 660
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + A +++D M +NG P+ TY L A + GL P+
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPN 512
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+YTA++DG K G+ + + LL E G PNV + + N
Sbjct: 513 PVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICD 572
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ G +P IT+ +I LC G+ A + M + +P+ Y +LI L Q+
Sbjct: 573 KMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 631
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A + + M G P V TY L A +L +K +G +PD
Sbjct: 419 CLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 478
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+TY ++ GF K G+ E +E G+ PN V+ L L
Sbjct: 479 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKR 538
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++G P ++N VI L + +A + M E G +P+ Y TLI L
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGL 593
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR + M ++G P++ T+ L EA +L + L PDV+TYT+++
Sbjct: 182 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C+ + + + ++ G PN ++T++ +I LC G+
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEGCDPN------------------SVTYSTLINGLCNEGR 283
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D+AL +L M E G P+ Y I L
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITAL 313
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PN TY L A ++ ++ G + TY ++ G C G
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ M L + ++ +G +P +T+N +I G ++ A L
Sbjct: 424 IEKAMVLFEK------------------MLKMGPLPTVVTYNTLINGYLTKGNVNNAARL 465
Query: 127 LFLMYEHGKIPSRTLYDTLIKKLDQ 151
L LM E+G P Y+ L+ +
Sbjct: 466 LDLMKENGCEPDEWTYNELVSGFSK 490
>gi|222619024|gb|EEE55156.1| hypothetical protein OsJ_02962 [Oryza sativa Japonica Group]
Length = 428
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EAR + M NG P V TYT L +A ++ + G+ P+V
Sbjct: 54 CRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNV 113
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY++++DG CK GR+ +ELL+ ++ PN TIT+++VI
Sbjct: 114 VTYSSLIDGLCKGGRAASAVELLDRMVKERKLPN------------------TITYSSVI 155
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G + +A+ +L M G+ P L+ LI
Sbjct: 156 DGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLI 190
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 34/165 (20%)
Query: 18 MFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
M G+ P TY +L +A + N+ KPD +Y V+DG C+
Sbjct: 1 MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACSYNTVIDGLCRR 56
Query: 65 GRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITF 107
GR E +L E I G P VV TLIH + G +P +T+
Sbjct: 57 GRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTY 116
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++I LC G+ A+ LL M + K+P+ Y ++I L ++
Sbjct: 117 SSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKE 161
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 22/161 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++D M PN TY+ + +A E+L ++ G KPD
Sbjct: 124 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDA 183
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ ++ G C GR+ E L+E G+ PN +T LH I+ + V+
Sbjct: 184 GLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTW-SLHGRIN----------DAVV 232
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
ALC G++ +A + M G T + L++ L ++
Sbjct: 233 TALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKK 273
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C+ + +A +++ M ++G PNV Y+ +L+ Y ++ + + G++PDV
Sbjct: 161 CDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDV 220
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT ++D CKVG++ + +++ + RG+ PNVV T+N +I
Sbjct: 221 VMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVV------------------TYNVLI 262
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+C G + +A+ +L M E G P Y+TLIK L
Sbjct: 263 NCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + KV M + G P+V YT L +A+ ++ + GL+P+
Sbjct: 195 YCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPN 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI----- 101
V TY +++ CK G E + +L + E+GV P+VVT LI L +V+++
Sbjct: 255 VVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLE 314
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TFN+VIQ LC +G++ +A + +M E G + + Y+ LI L
Sbjct: 315 EMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+D M G PNV TY +L EA +L + G+ PDV TY ++
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLI 297
Query: 59 DGFCKVGRSNEVMELLNEAIERG---VTPNVVTLIH-LHNVIDIGHIPRT---------- 104
G V +E M LL E + RG V PNVVT + + DIG + +
Sbjct: 298 KGLSDVLEMDEAMWLLEEMV-RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEET 356
Query: 105 ------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+T+N +I L V K+ KA+ L+ M G P Y LIK
Sbjct: 357 GCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIK 405
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN +YT+L +A +L ++++ G++ DV TY ++ G C ++ +EL
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 74 LNEAIERGVTPNVVTLIHLHNVI-------DIGHI----------PRTITFNNVIQALCG 116
+ E E G+ PNVV L D+G + P + + +I +LC
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK KA ++ +M G P+ Y+ LI
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLI 262
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML--MNVKNDGL 47
C C + EA V+ M + G P+V TY L EA +L M + +
Sbjct: 264 CMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIV 323
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV----- 95
KP+V T+ +V+ G C +GR + ++ E G N+VT L+ +H V
Sbjct: 324 KPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAME 383
Query: 96 -----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+G P + T++ +I+ C + ++D+A LL M + G P Y L+ +
Sbjct: 384 LMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMC 443
Query: 151 QQ 152
+Q
Sbjct: 444 EQ 445
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A +V M + G N+ TY +L +A E++ + + GL+PD
Sbjct: 338 CDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDS 397
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------------HLHNV 95
+TY+ ++ GFCK+ + + +LL+ +RG+ P + I +L N
Sbjct: 398 FTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNE 457
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D + ++ +I C G + A LL + + G P Y +I
Sbjct: 458 MDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVI 508
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A++++ + D G P+ TY+I+ A +L + G PDV
Sbjct: 477 CKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDV 536
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+ +++ G+ G N+V+EL+ E I + +
Sbjct: 537 AVFDSLIQGYSTKGEINKVLELIREMITKNI 567
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + M DN + +V Y+ + A E+L ++ ++GL PD
Sbjct: 443 CEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDA 501
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ V++ F K G +L + G P+V F+++I
Sbjct: 502 VTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVA------------------VFDSLI 543
Query: 112 QALCGVGKIDKALLLL 127
Q G+I+K L L+
Sbjct: 544 QGYSTKGEINKVLELI 559
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ +YT +M C +++ + LL GV +VVT +
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVT------------------Y 153
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ LC ++DKA+ L+ M E G P+ +Y +L++
Sbjct: 154 GTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C E + V M G PNV TY L +A +L + G+ PD
Sbjct: 277 FCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPD 336
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y ++DGFCK+ + +E M L E + + P+VVT L +
Sbjct: 337 IQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVD 396
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G P IT+++++ ALC ++DKA+ LL + + G P+ Y LI L
Sbjct: 397 EMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGL 452
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G PNV TY+ L +A ++ + + +KPDV
Sbjct: 208 CKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDV 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
YT+ ++DGFCK G+ E + +++G+ PNVVT L+
Sbjct: 268 YTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYT 327
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P ++N +I C + K+D+A+ L M+ IP Y++LI L
Sbjct: 328 MSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGL 382
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 33/160 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K++D M D G P++ TY+ + +A +L +K+ G++P++
Sbjct: 383 CKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNM 442
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIHLHNVIDIGHIPRTITFNN 109
YTYT ++DG CK GR + + + + +G +T N T++
Sbjct: 443 YTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVM------------------- 483
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C G D+AL LL M ++ IP Y+ +I+ L
Sbjct: 484 -IHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSL 522
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------ 88
A ++L V + ++P+V Y+ ++DG CK N+ +L +E + +G++PNVVT
Sbjct: 181 ALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALIS 240
Query: 89 ----------LIHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
I L N + + +I P TFN ++ C GK+ + + +M + G P
Sbjct: 241 GFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKP 300
Query: 138 SRTLYDTLI 146
+ Y +L+
Sbjct: 301 NVVTYCSLM 309
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 28/134 (20%)
Query: 22 GYHPNVTTYTIL--------EAYEMLM---NVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
GYHPN T+T L + ++ L+ NV G + D Y ++ G CKVG +
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181
Query: 71 MELLNEAIERGVTPNVV---TLI-------HLHNVIDI-------GHIPRTITFNNVIQA 113
++LL V PNVV T+I H+++ D+ G P +T++ +I
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241
Query: 114 LCGVGKIDKALLLL 127
VG++ A+ L
Sbjct: 242 FFTVGQLKDAIDLF 255
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+++A+ + + P + ++ K + V+ L + G+ P + H
Sbjct: 57 VVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQH 116
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
H ++ G+ P TITF +I+ LC G+I +ALL
Sbjct: 117 PHQLM--GYHPNTITFTTLIKGLCLKGQIHQALLF 149
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A+++ D M G P V YTIL EA M ++ G+ P+V
Sbjct: 193 CRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNV 252
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY +MDG+CK+ + + + L + + G+ P+VVT L N
Sbjct: 253 YTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVN 312
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I P +N++I A C VG + +A+ L + P Y LI+ L
Sbjct: 313 MIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGL 367
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 41/190 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPDV 51
C + +A ++ M +NG PNV T+ T+++ Y + N++ L PDV
Sbjct: 403 CKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDV 462
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TYTA++DG CK G E ++L ++ ++ G+TPN T+ L + G I
Sbjct: 463 VTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTE 522
Query: 102 ------PRT--------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
PR + + +I LC G+ KA+ L M +G P +
Sbjct: 523 KIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVI 582
Query: 142 YDTLIKKLDQ 151
Y +++ L Q
Sbjct: 583 YVVMLRGLFQ 592
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A ++ M G P+V T+ IL A + +N+ + P+
Sbjct: 262 YCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPN 321
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
+ Y +++D +CKVG +E M L E V+P+V T L + + G+I
Sbjct: 322 IAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFE 381
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++T+N++I C GK+DKAL + M E+G P+ + TLI
Sbjct: 382 KMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLI 434
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D EA + + P+V TY+IL EA + + +G+ +
Sbjct: 332 YCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILAN 391
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
TY +++DG CK G+ ++ +E+ ++ E GV PNV+T L
Sbjct: 392 SVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYS 451
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ P +T+ +I C G + +AL L M ++G P
Sbjct: 452 EMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITP 495
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
Query: 26 NVTTYTILEA--YEMLMNVK----NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79
NV Y +++ +E+L + ++GL P V T+ ++DG C+ G E+ +E
Sbjct: 151 NVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRV 210
Query: 80 RGVTPNVVT---LIH-------------LHNVI-DIGHIPRTITFNNVIQALCGVGKIDK 122
+G+ P V+ LI +H + ++G P T+N ++ C + +
Sbjct: 211 KGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQ 270
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKL 149
AL L M G +P + LI L
Sbjct: 271 ALRLYQDMLGEGLVPDVVTFGILIDGL 297
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P++ YTIL EAY + + +G+ PD +YT+V+ GFC++G
Sbjct: 596 MLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGD 655
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI-----------GHIPRTITFNN 109
+ L NE ++RG P VVT L N IDI G P +T+N
Sbjct: 656 MRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNV 715
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
+I A G +DKAL +L M E+G +P Y
Sbjct: 716 LIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY 748
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
GY + T Y+IL A++++ + + L PD + +++ GFCK+G
Sbjct: 425 GYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNA 484
Query: 71 MELLNEAIERGVTPNVVT----------------LIHLHNVIDI-GHIPRTITFNNVIQA 113
+E N +E G+ P++ T ++L N + G P T+N VI
Sbjct: 485 LEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINR 544
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC K ++AL L LM + +PS +Y TLI +Q
Sbjct: 545 LCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQ 583
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + + M + G P++ T ++ EA ++ ++ G+ P+
Sbjct: 475 FCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPN 534
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
++TY AV++ CK +S +EL ++R V P+VV L+
Sbjct: 535 LFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYA 594
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ IG P + + +I LC ++ +A L M E+G P + Y ++I
Sbjct: 595 RMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVI 647
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 37/166 (22%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------------EAYEMLMNVKNDG 46
N+ +F R + + M G PNV TYTI+ +A E+L ++ +G
Sbjct: 228 NRREFL--RSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNG 285
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
P V TY+ + G C+VG ++ V +LI + ++++
Sbjct: 286 ESPTVVTYSTYIYGLCRVGYVESALDF------------VRSLISANGLVNV------YC 327
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+N +I LC G++D+AL +L M G P Y LI +Q
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQ 373
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPD 50
+C D +A + + M G+ P V TYT L + +ML++ +K G+ PD
Sbjct: 650 FCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPD 709
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
V TY ++ + G ++ +E+LNE E GV P+ +T + L
Sbjct: 710 VVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMMLE 752
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA ++L +K+ G+ PDVYTY+ ++ GFCK G + + L+ E + P++V+ L
Sbjct: 343 EALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLF 402
Query: 94 N----------VIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ +DI G+ ++ +I+ C G +D A L+ M +
Sbjct: 403 HGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLA 462
Query: 137 PSRTLYDTLI 146
P + +++L+
Sbjct: 463 PDPSNFESLV 472
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + + G++PD
Sbjct: 146 FCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + +E +L +E ++RG+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P IT+N +I LC G + +A L M G P + Y TLI
Sbjct: 266 QMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLI 318
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A+ + D M G P+ TYT L A+E + + ++ D
Sbjct: 287 CKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YTA++ G CK GRS + ++L E + G+ P+ T T+ V+
Sbjct: 347 VSYTALISGLCKEGRSVDAEKMLREMLSVGLKPD------------------TGTYTIVM 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIP 137
C G + LL M G +P
Sbjct: 389 HEFCKNGDVKMGSKLLKEMQRDGHVP 414
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V ++ Y+ ++ + +Y + +MD FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWSF-----YKEILECR---YPASLYFFNILMDRFCKEGEI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 153 RLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D+A L M + G +P+ + TLI
Sbjct: 213 INGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLI 248
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA+ +++ M D G P++TT+ L EA ++ V G+ P
Sbjct: 330 CLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSP 389
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYT+ +++ CKVG + + L E G TP+ +T+N
Sbjct: 390 DVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD------------------EVTYNT 431
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC +GK+ KAL LL M G S Y+T+I L
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A I +G+ P+ TY A +++ + +G PD
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
V+TY V++ CK G+ E +LN+ ++RG P++ TLI L +D+
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I ALC VG AL L M G P Y+TLI L
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNL 436
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A ++ + M ++G P+ TY L +A ++L ++++ G
Sbjct: 402 CKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRST 461
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++DG CK R E E+ ++ +G++ N ITFN +I
Sbjct: 462 ITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN------------------AITFNTLI 503
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC KID A L+ M G P+ Y++++
Sbjct: 504 DGLCKDKKIDDAFELINQMISEGLQPNNITYNSIL 538
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 63/200 (31%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
V M G P+V T+ L A ML + + G+ PD T+T +M GF
Sbjct: 167 SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGF 226
Query: 62 -----------------------------------CKVGRSNEVMELLNEAIERGVTPNV 86
CK+GR + + + + I G P+
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286
Query: 87 VT-------------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
+T + H V+D+ GH P T+N V+ LC G++++A +L
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 130 MYEHGKIPSRTLYDTLIKKL 149
M + G +P T ++TLI L
Sbjct: 347 MVDRGCLPDITTFNTLIAAL 366
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I EA E+ + G+ + T+ ++DG CK + ++ EL+N+ I G+ PN +T
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536
Query: 89 -LIHLHNVIDI-------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H DI G +T+ +I LC G+ AL +L M G
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+ +++ L
Sbjct: 597 MRPTPKAYNPVLQSL 611
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 42/166 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + D +A +++ M NG+ DV TY +++G
Sbjct: 541 YCKQGDIKKAADILETMTANGFEV------------------------DVVTYGTLINGL 576
Query: 62 CKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVID----------IGHIPRT 104
CK GR+ +++L +G+ P + +L +N+ D +G P
Sbjct: 577 CKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDA 636
Query: 105 ITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ V + LC G G I +A + M + G IP + + L + L
Sbjct: 637 LTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGL 682
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G+KPDV T+ +M C+ + + +L E RGV P+ T L
Sbjct: 176 GIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAA 235
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G +T N +I C +G+++ AL + G P + Y+T +
Sbjct: 236 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295
Query: 149 LDQ 151
L Q
Sbjct: 296 LCQ 298
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++ D Y +++ + + + + +E RG+ P+VV
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVV------------------ 182
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TFN +++ALC ++ A+++L M G P T + TL++
Sbjct: 183 TFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQ 224
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA+ +++ M D G P++TT+ L EA ++ V G+ P
Sbjct: 330 CLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSP 389
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYT+ +++ CKVG + + L E G TP+ +T+N
Sbjct: 390 DVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD------------------EVTYNT 431
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC +GK+ KAL LL M G S Y+T+I L
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A I +G+ P+ TY A +++ + +G PD
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
V+TY V++ CK G+ E +LN+ ++RG P++ TLI L +D+
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I ALC VG AL L M G P Y+TLI L
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNL 436
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A ++ + M ++G P+ TY L +A ++L ++++ G
Sbjct: 402 CKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRST 461
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++DG CK R E E+ ++ +G++ N ITFN +I
Sbjct: 462 ITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN------------------AITFNTLI 503
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC KID A L+ M G P+ Y++++
Sbjct: 504 DGLCKDKKIDDAFELINQMISEGLQPNNITYNSIL 538
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 63/200 (31%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
V M G P+V T+ L A ML + + G+ PD T+T +M GF
Sbjct: 167 SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 226
Query: 62 -----------------------------------CKVGRSNEVMELLNEAIERGVTPNV 86
CK+GR + + + + I G P+
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286
Query: 87 VT-------------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
+T + H V+D+ GH P T+N V+ LC G++++A +L
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 130 MYEHGKIPSRTLYDTLIKKL 149
M + G +P T ++TLI L
Sbjct: 347 MVDRGCLPDITTFNTLIAAL 366
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I EA E+ + G+ + T+ ++DG CK + ++ EL+N+ I G+ PN +T
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536
Query: 89 -LIHLHNVIDI-------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H DI G +T+ +I LC G+ AL +L M G
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+ +++ L
Sbjct: 597 MRPTPKAYNPVLQSL 611
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 42/166 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + D +A +++ M NG+ DV TY +++G
Sbjct: 541 YCKQGDIKKAADILETMTANGFEV------------------------DVVTYGTLINGL 576
Query: 62 CKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVID----------IGHIPRT 104
CK GR+ +++L +G+ P + +L +N+ D +G P
Sbjct: 577 CKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDA 636
Query: 105 ITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ V + LC G G I +A + M + G IP + + L + L
Sbjct: 637 LTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGL 682
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G+KPDV T+ +M C+ + + +L E RGV P+ T L
Sbjct: 176 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAA 235
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G +T N +I C +G+++ AL + G P + Y+T +
Sbjct: 236 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295
Query: 149 LDQ 151
L Q
Sbjct: 296 LCQ 298
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++ D Y +++ + + + + +E RG+ P+VV
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVV------------------ 182
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TFN +++ALC ++ A+L+L M G P T + TL++
Sbjct: 183 TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQ 224
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + + G++PD
Sbjct: 146 FCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH---NVIDI------ 98
VYTY+ +++G CK + N+ EL +E I G+ PN V TLI H ID+
Sbjct: 206 VYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYK 265
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 EMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A + M G+ P++ TY L +A +++ + GLKPD
Sbjct: 251 HCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + I+ + + V LI L
Sbjct: 311 KITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ +I C G + LL M G +P
Sbjct: 371 EMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
F RKV+++ Y +V + ILE G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHFMKLKYFKSVWGFYKEILEC----------GYPASLYFFNILMHRFCKEG 150
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFN 108
+ +E + G+ P+VV+ L N I +G + P T++
Sbjct: 151 EMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYS 210
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC K++ A L M +G +P+ + TLI
Sbjct: 211 VLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLI 248
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
A +ML + + GLKPD TYT +++ FCK G +LL E G P VVT
Sbjct: 365 AEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + +A ++D M G P++ TY +L EA +L ++ + G KPD
Sbjct: 208 CKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDA 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVIDI------- 98
TYT V+ C R EV EL E P+ +VT + ++D
Sbjct: 268 VTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDH 327
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G IP +T+++++ LC VG++D A+ LL + +G P Y T++K L
Sbjct: 328 MSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 382
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K A KV++ M +NG +P++ TY I +A E+L N+++ G KPD+
Sbjct: 418 CQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDI 477
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+ ++ G C V R + +L+ + P+ TFN VI
Sbjct: 478 VTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDAT------------------TFNTVI 519
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+LC G + +A+ L +M E+G IP+++ Y+ ++ L
Sbjct: 520 TSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDAL 557
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E ++ M N P+ T+ + A +++ ++ G PD+
Sbjct: 278 CGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDI 337
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----TLIHLHNVIDIGHI------ 101
TY++++DG C VGR ++ +ELL+ G P+ + L L ++ H
Sbjct: 338 VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAE 397
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TFN VI +LC G +D+A+ ++ M E+G P Y+++I L
Sbjct: 398 MVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGL 452
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 30/175 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A + + M +NG PN +TY I+ EA ++L + N PD+
Sbjct: 523 CQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDL 580
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY V+ K G+ E ++LL + G++P+ +T L I
Sbjct: 581 ITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCR 640
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D+G P +N+++ C + D A+ M G +P + Y L++ L
Sbjct: 641 LQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEAL 695
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 32/159 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +AR++I M + P+ T+ L +A + ++ + G P
Sbjct: 140 YCRAGRIEDARRLISGM---PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPS 196
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY+ ++D CK + M LL+E +G P++V T+N +
Sbjct: 197 VVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIV------------------TYNVL 238
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I A+C G +D+AL +L + HG P Y ++K L
Sbjct: 239 INAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSL 277
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V D M G P+V TY+IL +A +L ++ G +PD+
Sbjct: 173 CVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDI 232
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ C G +E + +L++ G P+ VT + V+
Sbjct: 233 VTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVT------------------YTPVL 274
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++LCG + + L M + P ++T++ L QQ
Sbjct: 275 KSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQ 315
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M NG P+ TY L A ML +++ GL PD Y ++
Sbjct: 598 EALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDIL 657
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
GFC+ R++ ++ + G P+ T I L + + ++ LC +G
Sbjct: 658 LGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEA--KQLLVNLCSLG 715
Query: 119 KIDKALL 125
+DK+L+
Sbjct: 716 VLDKSLI 722
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA+ +++ M D G P++TT+ L EA ++ V G+ P
Sbjct: 330 CLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSP 389
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYT+ +++ CKVG + + L E G TP+ +T+N
Sbjct: 390 DVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD------------------EVTYNT 431
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC +GK+ KAL LL M G S Y+T+I L
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A I +G+ P+ TY A +++ + +G PD
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
V+TY V++ CK G+ E +LN+ ++RG P++ TLI L +D+
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I ALC VG AL L M G P Y+TLI L
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNL 436
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A ++ + M ++G P+ TY L +A ++L ++++ G
Sbjct: 402 CKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRST 461
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++DG CK R E E+ ++ +G++ N ITFN +I
Sbjct: 462 ITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN------------------AITFNTLI 503
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC KID A L+ M G P+ Y++++
Sbjct: 504 DGLCKDKKIDDAFGLINQMISEGLQPNNITYNSIL 538
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 63/200 (31%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
V M G P+V T+ L A ML + + G+ PD T+T +M GF
Sbjct: 167 SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 226
Query: 62 -----------------------------------CKVGRSNEVMELLNEAIERGVTPNV 86
CK+GR + + + + I G P+
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286
Query: 87 VT-------------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
+T + H V+D+ GH P T+N V+ LC G++++A +L
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 130 MYEHGKIPSRTLYDTLIKKL 149
M + G +P T ++TLI L
Sbjct: 347 MVDRGCLPDITTFNTLIAAL 366
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 42/166 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + D +A +++ M NG+ DV TY +++G
Sbjct: 541 YCKQGDIKKAADILETMTANGFEV------------------------DVVTYGTLINGL 576
Query: 62 CKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVID----------IGHIPRT 104
CK GR+ +++L +G+ P + +L +N+ D +G P
Sbjct: 577 CKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDA 636
Query: 105 ITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ V + LC G G I +A + M + G IP + + L + L
Sbjct: 637 LTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGL 682
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G+KPDV T+ +M C+ + + +L E RGV P+ T L
Sbjct: 176 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAA 235
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G +T N +I C +G+++ AL + G P + Y+T +
Sbjct: 236 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295
Query: 149 LDQ 151
L Q
Sbjct: 296 LCQ 298
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I EA E+ + G+ + T+ ++DG CK + ++ L+N+ I G+ PN +T
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNS 536
Query: 89 -LIHLHNVIDI-------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H DI G +T+ +I LC G+ AL +L M G
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+ +++ L
Sbjct: 597 MRPTPKAYNPVLQSL 611
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++ D Y +++ + + + + +E RG+ P+VV
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVV------------------ 182
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TFN +++ALC ++ A+L+L M G P T + TL++
Sbjct: 183 TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQ 224
>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C ++D A ++ M +G+ P + T L EA + L+++ +G +P
Sbjct: 403 CLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQP 462
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
D+ Y+A +DG K+ ++ ++L + +G P+V+ LI L
Sbjct: 463 DIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLL 522
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
H + + G +P +T+N +I LC +++A+L L +M E + P+ Y TLI L
Sbjct: 523 HEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGL 579
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A K+ + GY P+V Y IL EA +L ++ GL P TY ++
Sbjct: 482 QALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLI 541
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG CK E M L+ IE+ PNV IT++ +I LC G
Sbjct: 542 DGLCKTDHLEEAMLFLSMMIEKEREPNV------------------ITYSTLINGLCNAG 583
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D AL+L M G PS Y I L
Sbjct: 584 RPDDALVLWNEMGRKGCTPSSIAYMAFIHGLS 615
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 34/161 (21%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN TT++I+ A + ++ G KPD+ Y ++DG C R E L
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGL 381
Query: 74 LNEAIERGVTPNVVT----------------LIHLHNVIDI-GHIPRTITFNNVIQALCG 116
L E E G+ P T +HL + I GH+P ++++ LC
Sbjct: 382 LQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCK 441
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLY----DTLIK--KLDQ 151
GK +A L M E G P Y D LIK ++DQ
Sbjct: 442 HGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQ 482
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYH-PNVTTYTIL----------EAYEMLMNVKND-GLK 48
C N EA + D + G PN +YT L + EM + +D G
Sbjct: 39 CLGNAGLVVEANLLFDQVQKMGLCVPNSYSYTCLLEVLSKSICIDLLEMRLKEMHDHGWG 98
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI--- 105
D YT T V+ +C + ++ +++ NE +RG V I + G + +
Sbjct: 99 FDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYVFSILVLAFSKWGKVDKACELI 158
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF ++I ++DKAL L M + G P +LYD +I L
Sbjct: 159 ETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGL 215
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C+ + +A VI M G+ P+ +TY+ + A+ + +K GL
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVA 516
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + + NE E G TPNVVT LIH
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ G +P +T++ +I C G+++KA + M +P +Y
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMY 626
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY+++ ++ G +P+V TYTA++D
Sbjct: 729 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 788
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GF ++G+ +ELL +GV PN VT
Sbjct: 789 GFGRIGKIETCLELLERMGSKGVAPNYVT 817
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 17 YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
Y DN PNV Y L EA ++L + +G +P+ Y A++DG CKVG
Sbjct: 630 YDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 689
Query: 66 RSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFN 108
+ +E E+ E E G + T LI L +++ P + +
Sbjct: 690 KLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 749
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC VGK D+A L+ +M E G P+ Y +I
Sbjct: 750 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 787
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EARK++D M G PN Y L EA E+ + G
Sbjct: 650 FCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPAT 709
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+YTY++++D + KV R + ++L++ +E PNVV + + +
Sbjct: 710 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 769
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+ +I +GKI+ L LL M G P+ Y LI
Sbjct: 770 MMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLI 822
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 45/192 (23%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPD 50
+C +ARK + M + G PNV TYT ++ AY E+ + ++G P+
Sbjct: 528 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 587
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI-----------------ERGVTPNVVT----- 88
+ TY+A++DG CK G+ + ++ + PNVV
Sbjct: 588 IVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALL 647
Query: 89 --LIHLHNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
LH V + G P I ++ +I LC VGK+D+A + M EHG
Sbjct: 648 DGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFP 707
Query: 137 PSRTLYDTLIKK 148
+ Y +LI +
Sbjct: 708 ATLYTYSSLIDR 719
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---- 92
E L ++ + PD YT ++ G C+ E M+ LN PNVVT L
Sbjct: 288 EALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 93 ---------HNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
V+++ G P FN+++ A C G A LL M + G P
Sbjct: 348 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGY 407
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 408 VVYNILI 414
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 65/212 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C K D EA K++ M + G PNV TYT I E+L + + G+ P
Sbjct: 756 CKVGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAP 813
Query: 50 DVYTYTAVMDGFCKVGRSN---------------------------------EVMELLNE 76
+ TY ++D CK G + E + LL+E
Sbjct: 814 NYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDE 873
Query: 77 ----------AIERGVTPNVVTLIHLHNVI----DIGHIPRTI-----TFNNVIQALCGV 117
++ R + N++ L + ++ T+ T+N++I++LC
Sbjct: 874 IGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLA 933
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K+DKA L M + G IP + +LIK L
Sbjct: 934 NKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGL 965
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M PNV TY+ L +L + +G P
Sbjct: 313 CEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSP 372
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHL- 92
+ +++ +C G + +LL + ++ G TP V L+ L
Sbjct: 373 KIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELA 432
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ G + I ++ + LC GK +KA ++ M G IP + Y ++
Sbjct: 433 EKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGY 492
Query: 149 L 149
L
Sbjct: 493 L 493
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 42/161 (26%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY--------------EM-LMNVKND 45
YC F A + + + D + P+ +TY +++A+ EM L N++ D
Sbjct: 210 YCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMD 269
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G Y Y+ CKVG+ E + L+ T N V P T+
Sbjct: 270 GFTLRCYAYS-----LCKVGKWREALTLME-------TENFV--------------PDTV 303
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I LC ++A+ L M +P+ Y TL+
Sbjct: 304 FYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C +A +V++ M NG P+ TY +IL EA L +++DG++PDV
Sbjct: 242 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDV 301
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY+ +MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P+ Y +I
Sbjct: 362 MVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HP+ ++IL +A + ++ GL P+
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPN 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY AV+ CK GR + M + I+ G++P N+V +LIH +
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 465
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P+ Y+TLI
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 32/147 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND---GLKPDVYTYTAVMD 59
V+ M + G PNV +Y IL EA E+L + +D G PDV +YT V++
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GF K G S++ +E ++RG+ P+VV T+N++I ALC
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVV------------------TYNSIIAALCKAQA 246
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+DKA+ +L M ++G +P Y++++
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSIL 273
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ + M G PNV TY L EA ++L + + GLKP+
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY+ +++G+CK+ R + + L E GV+P+++T
Sbjct: 546 TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 31/162 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C CNK + A ++I M D G N + ++E+ ++ + G+KP
Sbjct: 452 CTCNK--WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V TY +++G+C G+ +E M+LL+ + G+ PN T+T++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN------------------TVTYST 551
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDN---GYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C++N EA +++ M D+ G P+V +YT + +AY + + G+
Sbjct: 169 CDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGIL 228
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
PDV TY +++ CK ++ ME+LN ++ GV P+ +T ++H
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L + G P +T++ ++ LC G+ +A + M + G P T Y TL++
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA K++ M G PN TY+ L +A + +++ G+ PD
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN--------------- 94
+ TY ++ G + R+ EL E G + T I LH
Sbjct: 581 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQ 640
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY--------- 142
++D+ R TFN +I AL VG+ D+A L +G +P+ Y
Sbjct: 641 NLCLMDLKLEAR--TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 698
Query: 143 DTLIKKLDQ 151
L+++LDQ
Sbjct: 699 QGLLEELDQ 707
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 31/136 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P++ TY IL + L NV G + D +T ++ G C R+++ M++
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + ++G IP ++N +++ LC + +AL LL +M +
Sbjct: 145 V-----------------LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187
Query: 134 ---GKIPSRTLYDTLI 146
G P Y T+I
Sbjct: 188 RGGGSPPDVVSYTTVI 203
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH-PNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C K D A ++ M + + PNV Y+ + +A + ++ G+ PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
++TY +++ GFC GR ++ +LL E +ER ++P+VVT L N
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G IP TIT++++I C ++D A + +LM G P+ ++TLI
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + M + G P++ TY + +A ++L + + PDV
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI------- 98
TY A+++ F K G+ E EL +E + RG+ PN +T + N +D
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P ITFN +I CG +ID + LL M E G + T Y+TLI
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + +A +++ M + P+V TY L EA E+ + G+ P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY++++DGFCK R + + +G +PN++T LI LH
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G + T T+N +I VG ++ AL LL M G P DTL+ L
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + + +PNVV TF +I C G++D L L
Sbjct: 565 ATQMFDSMGSKSFSPNVV------------------TFTTLINGYCKAGRVDDGLELFCE 606
Query: 130 MYEHGKIPSRTLYDTLI 146
M G + + Y TLI
Sbjct: 607 MGRRGIVANAITYITLI 623
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C+ + A + G HP+V T+T L EA + + +P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+V T+T +M+G C+ GR E + LL+ +E G+ P +T L L
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242
Query: 93 HNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ H IP + ++ +I +LC G+ A L M E G P Y+++I
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 39/190 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +N A + M G PN+ T+ T+++ Y E+L + GL D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY ++ GF VG N ++LL E I G+ P++VT L + D G +
Sbjct: 430 TTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFK 489
Query: 102 -------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P T+N +I L GK +A L M G +P Y
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549
Query: 143 DTLIKKLDQQ 152
++I L +Q
Sbjct: 550 SSMIDGLCKQ 559
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++ D M + PNV T+T L + E+ + G+ +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ GF KVG N +++ E I GV P+ +T+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654
>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
Length = 892
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++F +AR +++ M + G P+ +Y+ L A E+ + +G+ +
Sbjct: 415 YCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGN 474
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYT+T ++ GFCK G +E L ++ I+ V PN +TFN +
Sbjct: 475 VYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPN------------------EVTFNVM 516
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ C VG + KA L M + G P Y +LI L
Sbjct: 517 IEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVL 555
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 16/134 (11%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I++A + DG P+V TYT +++ CK G + L E + PN T
Sbjct: 666 IVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNC 725
Query: 89 -------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
LH I G + T+TFN +I+ C G+I A+ L+ E G
Sbjct: 726 FLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGF 785
Query: 136 IPSRTLYDTLIKKL 149
P Y T+I +L
Sbjct: 786 FPDCISYSTIINEL 799
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A ++ D M + P+V + + + +A+ + ++ G+ P+
Sbjct: 275 FCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPN 334
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRTIT--- 106
++ A++D CK R E L RG+ PN VT I +H++ G + +
Sbjct: 335 LFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFD 394
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N++I C +A LL M E G PS Y LI L
Sbjct: 395 RMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGL 450
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 28/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMNVKNDGLKPDVY 52
C A+ + + M + PN TY LE ++L +G +
Sbjct: 696 CKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGCLANTV 755
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
T+ ++ GFCK G+ ++L+ E G P+ I+++ +I
Sbjct: 756 TFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDC------------------ISYSTIIN 797
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC VG I+KA L M G P Y+ LI+
Sbjct: 798 ELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIR 832
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+Y++ G + A +L +++ G+K Y +M G C+ R E +E+ N
Sbjct: 195 EYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKN 254
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
+ERG+ + VT L +++ + +P + + ++ L G
Sbjct: 255 SMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRG 314
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IDKA L + E G +P+ + LI KL
Sbjct: 315 HIDKAFRLACHLGELGMVPNLFACNALIDKL 345
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A ++ D M D G P+ TY L +A E + +++N+ + +
Sbjct: 520 YCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLN 579
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
++ T +M GFCK GR E + +E RGV ++++
Sbjct: 580 SFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISF 618
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 56/211 (26%), Positives = 81/211 (38%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ A + M + G PNV TYT L AYE++ + ++G P+
Sbjct: 969 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 1028
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
+YTY A +D CK R+ E ELLN+A G+ + VT
Sbjct: 1029 IYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFC 1088
Query: 90 ----------IHLHN---------------------VIDIGHIPRTITFNNVIQALCGVG 118
+ L+N V+ +G IP T+ ++I C G
Sbjct: 1089 RMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEG 1148
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
ID AL M HG +P Y +LI L
Sbjct: 1149 DIDLALKYFHNMKRHGCVPDSFTYGSLISGL 1179
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C K +A ++++ M NG+ PNV T+T L +A+ + + V++D KP+
Sbjct: 899 CKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPN 958
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH-------------N 94
V+TYT+++ G+CK + N L + E+G+ PNV TLI+ H N
Sbjct: 959 VHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMN 1018
Query: 95 VI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ D G +P T+N I +LC + +A LL + G Y LI++ +Q
Sbjct: 1019 LMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQ 1077
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + + M G+ P+ T T++ A + + G KP++ +T+++
Sbjct: 836 EADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLI 895
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHLHNVIDIGH 100
DG CK G + E+L E + G PNV T + L V +
Sbjct: 896 DGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTY 955
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ ++I C K+++A +L M E G P+ Y TLI
Sbjct: 956 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 1001
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 63/207 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C F A ++++ M D G+ PN+ TY EAYE+L + GL+ D
Sbjct: 1004 HCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEAD 1063
Query: 51 VYTYTAVMD-----------------------------------GFCKVGRSNEVMELLN 75
TYT ++ FC+ + E L
Sbjct: 1064 GVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQ 1123
Query: 76 EAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ G+ P T L + HN+ G +P + T+ ++I LC
Sbjct: 1124 LVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKS 1183
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTL 145
+D+A L M + G P TL
Sbjct: 1184 MVDEACKLYEAMIDRGLSPPEVTRVTL 1210
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V D M G P+ ++Y ++ EA L + G PD T T ++
Sbjct: 802 AENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILT 861
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
C+ G L+N AI + +ID+G P I F ++I LC G
Sbjct: 862 ALCENG-------LVNRAI-----------WYFRKMIDLGFKPNLINFTSLIDGLCKKGS 903
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +A +L M +G P+ + LI L
Sbjct: 904 IKQAFEMLEEMVRNGWKPNVYTHTALIDGL 933
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------V 86
EA M+M+++N GL P T V++ ++G + +E RGV P+ V
Sbjct: 766 EAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMV 825
Query: 87 VTLIH----------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ L +I G IP T ++ ALC G +++A+ M + G
Sbjct: 826 IGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFK 885
Query: 137 PSRTLYDTLIKKL 149
P+ + +LI L
Sbjct: 886 PNLINFTSLIDGL 898
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH-PNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C K D A ++ M + + PNV Y+ + +A + ++ G+ PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
++TY +++ GFC GR ++ +LL E +ER ++P+VVT L N
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G IP TIT++++I C ++D A + +LM G P+ ++TLI
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + M + G P++ TY + +A ++L + + PDV
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI------- 98
TY A+++ F K G+ E EL +E + RG+ PN +T + N +D
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P ITFN +I CG +ID + LL M E G + T Y+TLI
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + +A +++ M + P+V TY L EA E+ + G+ P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY++++DGFCK R + + +G +PN++T LI LH
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G + T T+N +I VG ++ AL LL M G P DTL+ L
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + + +PNVV TF +I C G++D L L
Sbjct: 565 ATQMFDSMGSKSFSPNVV------------------TFTTLINGYCKAGRVDDGLELFCE 606
Query: 130 MYEHGKIPSRTLYDTLI 146
M G + + Y TLI
Sbjct: 607 MGRRGIVANAITYITLI 623
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C+ + A + G HP+V T+ L EA + + +P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+V T+T +M+G C+ GR E + LL+ +E G+ P +T L L
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242
Query: 93 HNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ H IP + ++ +I +LC G+ A L M E G P Y+++I
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 39/190 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +N A + M G PN+ T+ T+++ Y E+L + GL D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY ++ GF VG N ++LL E I G+ P++VT L + D G +
Sbjct: 430 TTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFK 489
Query: 102 -------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P T+N +I L GK +A L M G +P Y
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549
Query: 143 DTLIKKLDQQ 152
++I L +Q
Sbjct: 550 SSMIDGLCKQ 559
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++ D M + PNV T+T L + E+ + G+ +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ GF KVG N +++ E I GV P+ +T+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
++ D+Y++T ++ FC + + + + G+ P+VVT
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVT------------------ 151
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
FN ++ LC ++ +AL L M+E P+ + TL+ L
Sbjct: 152 FNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGL 194
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 3 CNKNDFFEARKVID-----YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG 46
C N EA ++ D Y +G P+V +Y+ + +AYE ++ G
Sbjct: 191 CKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVG 250
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH------------ 91
P+V TY++++DG CKV R +E +ELL E+G N++ ++H
Sbjct: 251 CAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKAC 310
Query: 92 --LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P +T+N + LC G++D+A +L M E P Y ++I
Sbjct: 311 QFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSII 367
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 5 KNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
KND E A + + + +G PNV TY + EAY +L+ + + PDV
Sbjct: 302 KNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVI 361
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNV 95
TY++++DGFCK GR ++ ++ + P+ VT + L ++
Sbjct: 362 TYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDM 421
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G IP T+N ++ +CG ++ AL + M + P Y LI+ L
Sbjct: 422 VNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCL 475
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 60/122 (49%), Gaps = 21/122 (17%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-----------LHN 94
P+ YT V++GFCK G+ ++ ELL+E ERGV +V+ TLI L
Sbjct: 109 PNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQ 168
Query: 95 VIDIGH--IPRTITFNNVIQALCGVGKIDKALLLLFLM---YE--HGKIPSRTLYDTLIK 147
+G P IT+N V+ LC +ID+AL L M YE HG P Y T+I
Sbjct: 169 FKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVID 228
Query: 148 KL 149
L
Sbjct: 229 AL 230
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A +++D M + G +V ++ L EA E ++ + P+
Sbjct: 121 FCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPN 179
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY V++G CK R +E +EL ++ +R + G P I+++ V
Sbjct: 180 VITYNTVVNGLCKANRIDEALELFDDMEKRYEASH-------------GCEPDVISYSTV 226
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I ALC ++DKA M G P+ Y +LI L
Sbjct: 227 IDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGL 265
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 30/154 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVY 52
C + + EA V+D + + G P T+ IL EA L+ ++ G D
Sbjct: 511 CKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLL--RSPGFVADAA 568
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
TY+ + CK G+ +E +E++ + + +GV P D G T+ V++
Sbjct: 569 TYSLCVAEICKAGKPDEAVEVIEQMVLKGVRP------------DEG------TYVAVLR 610
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+LCG+ +++ A+ M G P Y LI
Sbjct: 611 SLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLI 644
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V + M + G+ P + TY +L A E+ +K +PD TY ++
Sbjct: 413 EAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLI 472
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
C+ R +E E L+ V PN G I + ++ LC G
Sbjct: 473 QCLCRARRVDEAKEFLDVMEADNVVPN-------------GAICHAL-----VEVLCKQG 514
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D+A +L + E G P + L+++L
Sbjct: 515 EVDEACSVLDNVVEVGCQPLGETFKILVEEL 545
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G + + YT +++ F K R E LL E +E PN I
Sbjct: 71 GFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPN------------------EI 112
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ VI C G++D+A LL M E G L+ TLI+ L
Sbjct: 113 MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGL 156
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH-PNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C K D A ++ M + + PNV Y+ + +A + ++ G+ PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
++TY +++ GFC GR ++ +LL E +ER ++P+VVT L N
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G IP TIT++++I C ++D A + +LM G P+ ++TLI
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + M + G P++ TY + +A ++L + + PDV
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI------- 98
TY A+++ F K G+ E EL +E + RG+ PN +T + N +D
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P ITFN +I CG +ID + LL M E G + T Y+TLI
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + +A +++ M + P+V TY L EA E+ + G+ P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY++++DGFCK R + + +G +PN++T LI LH
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G + T T+N +I VG ++ AL LL M G P DTL+ L
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + + +PNVV TF +I C G++D L L
Sbjct: 565 ATQMFDSMGSKSFSPNVV------------------TFTTLINGYCKAGRVDDGLELFCE 606
Query: 130 MYEHGKIPSRTLYDTLI 146
M G + + Y TLI
Sbjct: 607 MGRRGIVANAITYITLI 623
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C+ + A + G HP+V T+ L EA + + +P
Sbjct: 123 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+V T+T +M+G C+ GR E + LL+ +E G+ P +T L L
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242
Query: 93 HNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ H IP + ++ +I +LC G+ A L M E G P Y+++I
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 39/190 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +N A + M G PN+ T+ T+++ Y E+L + GL D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY ++ GF VG N ++LL E I G+ P++VT L + D G +
Sbjct: 430 TTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFK 489
Query: 102 -------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P T+N +I L GK +A L M G +P Y
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549
Query: 143 DTLIKKLDQQ 152
++I L +Q
Sbjct: 550 SSMIDGLCKQ 559
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++ D M + PNV T+T L + E+ + G+ +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ GF KVG N +++ E I GV P+ +T+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
++ D+Y++T ++ FC + + + + G+ P+VVT
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVT------------------ 151
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
FN ++ LC ++ +AL L M+E P+ + TL+ L
Sbjct: 152 FNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGL 194
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH-PNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C K D A ++ M + + PNV Y+ + +A + ++ G+ PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
++TY +++ GFC GR ++ +LL E +ER ++P+VVT L N
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G IP TIT++++I C ++D A + +LM G P+ ++TLI
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + M + G P++ TY + +A ++L + + PDV
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI------- 98
TY A+++ F K G+ E EL +E + RG+ PN +T + N +D
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P ITFN +I CG +ID + LL M E G + T Y+TLI
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + +A +++ M + P+V TY L EA E+ + G+ P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY++++DGFCK R + + +G +PN++T LI LH
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G + T T+N +I VG ++ AL LL M G P DTL+ L
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + + +PNVV TF +I C G++D L L
Sbjct: 565 ATQMFDSMGSKSFSPNVV------------------TFTTLINGYCKAGRVDDGLELFCE 606
Query: 130 MYEHGKIPSRTLYDTLI 146
M G + + Y TLI
Sbjct: 607 MGRRGIVANAITYITLI 623
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C+ + A + G HP+V T+T L EA + + +P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRP 182
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+V T+T +M+G C+ GR E + LL+ +E G+ P +T L L
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242
Query: 93 HNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ H IP + ++ +I +LC G+ A L M E G P Y+++I
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 39/190 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +N A + M G PN+ T+ T+++ Y E+L + GL D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY ++ GF VG N ++LL E I G+ P++VT L + D G +
Sbjct: 430 TTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFK 489
Query: 102 -------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P T+N +I L GK +A L M G +P Y
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549
Query: 143 DTLIKKLDQQ 152
++I L +Q
Sbjct: 550 SSMIDGLCKQ 559
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++ D M + PNV T+T L + E+ + G+ +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ GF KVG N +++ E I GV P+ +T+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654
>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
Length = 484
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 30/157 (19%)
Query: 2 YCNKNDF-FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
Y +ND + V+D M NG P+VTTY+ + +A +L+ ++ D +KP
Sbjct: 285 YSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLEMQQDRVKP 344
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV + + G+ + GR++E LL + GV PNVV +
Sbjct: 345 DVRAFAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVV------------------YTT 386
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I C +G++D AL +L LM E G+ P+ TL+
Sbjct: 387 IISGWCSMGRMDDALRVLELMLERGEAPNLNTVQTLV 423
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C + EA +V+ + G P+ TY T+ +AY +++ ++KN LKP+
Sbjct: 180 WCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPN 239
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------IHLHNVI 96
+ TY ++ +C+ G ++LL+ G+ P+VV + L V+
Sbjct: 240 LRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAFNTLLKGYSQENDQQLKLEMVL 299
Query: 97 DI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
D+ G P T++ ++ G DKA +L M + P + L K
Sbjct: 300 DLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLEMQQDRVKPDVRAFAILAK 354
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 42/168 (25%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNE 69
G+ P+V YT+ EA ++L ++ DGL PD + V++G+C G+ E
Sbjct: 46 GHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEE 105
Query: 70 VMELLNEAIERGVTPNVVT--------------------LIHLHNV----------IDIG 99
M ++ E ++ P T ++HL N ++
Sbjct: 106 AMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTRNSPSSEDGLEPV 165
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T N ++ A C G++++A ++ ++ G P Y+TL K
Sbjct: 166 ARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAK 213
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 41/192 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKN------ 44
+CN+ EA +V+ M P +TY L +A ++++++ N
Sbjct: 97 WCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTRNSP 156
Query: 45 ---DGL----KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------- 88
DGL +P++ T +++ +C+ GR E ++ G+ P+ VT
Sbjct: 157 SSEDGLEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYA 216
Query: 89 ----LIHLHNVI-DIGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
+ L ++I D+ + P T+ +I C G ++ L LL + G P
Sbjct: 217 AAGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVV 276
Query: 141 LYDTLIKKLDQQ 152
++TL+K Q+
Sbjct: 277 AFNTLLKGYSQE 288
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E++ ++ M G P+V Y+IL +A ++ + + G+ PDV
Sbjct: 231 CKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDV 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI--- 98
Y+Y +++G CK R +E M LL E + + + P+ VT L + ++D+
Sbjct: 291 YSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKE 350
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +T+N+++ LC +DKA+ L M E G P++ Y LI L
Sbjct: 351 MHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGL 405
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K++ + D P+V Y+ + EAY++ + G+ PDV TYT ++
Sbjct: 134 AIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLIC 193
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GFC G+ E LLNE I + + PN+ T+N +I LC GK
Sbjct: 194 GFCLAGQLMEAFGLLNEMILKNINPNIY------------------TYNTLIDTLCKEGK 235
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ LL +M + G P +Y L+
Sbjct: 236 VKESKNLLAVMTKKGVKPDVVIYSILM 262
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 29/143 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G N+ TY L +A + M +K G++P+ YTYTA++DG CK GR
Sbjct: 351 MHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGR 410
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ L + +G +V T+ +I LC G D+AL +
Sbjct: 411 LKKGQALFQHLLVKGYCIDV------------------WTYTVMISGLCKEGMFDEALAM 452
Query: 127 LFLMYEHGKIPSRTLYDTLIKKL 149
M ++G IP+ ++ +I+ L
Sbjct: 453 KSKMEDNGCIPNAVTFEIIIRSL 475
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAYEMLMNVKND----------GLKP 49
C+C+ + V+ + GY PN + T+++ + VK G +
Sbjct: 54 CFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQM 113
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI- 98
D +Y +++G CK+G + ++LL +R P+VV T+I + D+
Sbjct: 114 DQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLY 173
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P IT+ +I C G++ +A LL M P+ Y+TLI L ++
Sbjct: 174 SEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKE 233
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 68/159 (42%), Gaps = 25/159 (15%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
E K++ + ++P V + + ++ G+ PD+ T + +++ FC +G+
Sbjct: 10 IIEFGKILGSLVKMKHYPTVISLS--------KQMEAKGIVPDLVTLSILINCFCHLGQM 61
Query: 68 NEVMELLNEAIERGVTPNVVTL----------------IHLHN-VIDIGHIPRTITFNNV 110
+L + ++ G PN + L +H H+ V+ G +++ +
Sbjct: 62 AFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGIL 121
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC +G+ A+ LL + + P +Y T+I L
Sbjct: 122 LNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGL 160
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P + + ++ K+ V+ L + +G+ P++VTL L N
Sbjct: 8 PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
++ +G+ P TI N +++ LC G++ K+L
Sbjct: 68 LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSL 100
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKPDV 51
C K EA ++ M + G P+ TY IL EM +++ ++ G P V
Sbjct: 102 CKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTV 161
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTI----- 105
TYT ++ GFC GR + M++L+E RG+TPN VT L + D G + R I
Sbjct: 162 VTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKE 221
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ +I LC G + + L M G P+ Y LI L Q+
Sbjct: 222 MKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQK 281
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K F + +D M +G PN TYT LEA +L + G + DV
Sbjct: 244 CQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDV 303
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +++DG CK+G + E+ +E+GV P+V T+ ++I
Sbjct: 304 VIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDV------------------FTYTSLI 345
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
Q LC G +D+AL L+ M G +P+ Y TLI Q
Sbjct: 346 QGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQ 385
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLK----- 48
+C A ++D M G PN TYT L E ++ +K L+
Sbjct: 171 FCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECC 230
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
P+V TYT ++ G C+ G ME L+E I G PN T LIH
Sbjct: 231 PNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVL 290
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L+ ++ IG + +N++I LC +G++D A + LM E G P Y +LI+ L
Sbjct: 291 LNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGL 348
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K F EA +++ M G +V Y L A EM + + G+ PDV
Sbjct: 279 CQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDV 338
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT+++ G C G +E + L+ E +G+ PN ++T+ +I
Sbjct: 339 FTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPN------------------SVTYTTLI 380
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D AL L+ M +G +P+ +Y L K L
Sbjct: 381 NGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DV +Y+ ++G CK G+ E ME+ E E+G P+ T LI+ +
Sbjct: 90 DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+ +I C G++D A+ +L M G P+ Y LI+ L
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGL 206
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN A +++ M PNV T+ +L EA E++ + G P++
Sbjct: 499 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 558
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY ++DG K S E +ELL+ + GV+P++VT + H
Sbjct: 559 ITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHI 618
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V D+G P+ + +N ++ ALC D A+ M +G +P+ Y TLI+ L +
Sbjct: 619 VQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 676
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F +A +V+D M G PN+ TY ++ +A E L + + G +PD
Sbjct: 222 CKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDT 281
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI--- 98
+YT V+ G C R +V EL E +E+ PN VT L I +
Sbjct: 282 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 341
Query: 99 --GH--IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GH T N VI +C G++D A L M +G P Y T++K L
Sbjct: 342 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 396
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ EA ++D M G P+V TYT+L +A E+L ++ G P++
Sbjct: 187 CDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNI 246
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY +++G C+ GR ++ E LN G P+ V+ +
Sbjct: 247 VTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAE 306
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ +P +TF+ +++ C G +++A+ +L M HG + TL + +I + +Q
Sbjct: 307 MMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ 364
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 32/155 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A +I+ M ++G N+ TY L A E+ ++ KP+
Sbjct: 432 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNT 488
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C R + ELL E +++ PNVV TFN ++
Sbjct: 489 ITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVV------------------TFNVLV 530
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G +D+A+ L+ M EHG P+ Y+TL+
Sbjct: 531 SFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 565
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC AR++I M P+ TYT + EA +L ++ + G +P
Sbjct: 154 YCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPS 210
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TYT +++ CK + ME+L+E +G TPN+VT +I+ L+
Sbjct: 211 VVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN 270
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P T+++ V++ LC + + L M E +P+ +D L++
Sbjct: 271 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 324
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V++ M +G N T I+ +A++ L N+ + G PD
Sbjct: 326 FCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPD 385
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YT V+ G C+ R + ELL E + + PN +TFN
Sbjct: 386 TISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN------------------EVTFNTF 427
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G I++A +L+ M EHG + Y+ L+
Sbjct: 428 ICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALV 463
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI---- 101
G PDVY T ++ C+ GR+++ +L A G +V +N + G+
Sbjct: 104 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFA----YNTLVAGYCRYGQ 159
Query: 102 --------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T+ +I+ LC G++ +AL LL M G PS Y L++
Sbjct: 160 LDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLE 219
Query: 148 KL 149
+
Sbjct: 220 AV 221
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C +A +V++ M NG P+ TY +IL EA L +++DG++PDV
Sbjct: 242 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDV 301
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY+ +MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P+ Y +I
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HP+ ++IL +A + ++ GL P+
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPN 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY AV+ CK GR + M + I+ G++P N+V +LIH +
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 465
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P+ Y+TLI
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 32/147 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND---GLKPDVYTYTAVMD 59
V+ M + G PNV +Y IL EA E+L + +D G PDV +YT V++
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GF K G S++ +E ++RG+ P+VV T+N++I ALC
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVV------------------TYNSIIAALCKAQA 246
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+DKA+ +L M ++G +P Y++++
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSIL 273
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ + M G PNV TY L EA ++L + + GLKP+
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY+ +++G+CK+ R + + L E GV+P+++T
Sbjct: 546 TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 31/162 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C CNK + A ++I M D G N + ++E+ ++ + G+KP
Sbjct: 452 CTCNK--WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V TY +++G+C G+ +E M+LL+ + G+ PN T+T++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN------------------TVTYST 551
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDN---GYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C++N EA +++ M D+ G P+V +YT + +AY + + G+
Sbjct: 169 CDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGIL 228
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
PDV TY +++ CK ++ ME+LN ++ GV P+ +T ++H
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L + G P +T++ ++ LC G+ +A + M + G P T Y TL++
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA K++ M G PN TY+ L +A + +++ G+ PD
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN--------------- 94
+ TY ++ G + R+ EL E G + T I LH
Sbjct: 581 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQ 640
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY--------- 142
++D+ R TFN +I AL VG+ D+A L +G +P+ Y
Sbjct: 641 NLCLMDLKLEAR--TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 698
Query: 143 DTLIKKLDQ 151
L+++LDQ
Sbjct: 699 QGLLEELDQ 707
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 31/136 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P++ TY IL + L NV G + D +T ++ G C R+++ M++
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + ++G IP ++N +++ LC + +AL LL +M +
Sbjct: 145 V-----------------LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187
Query: 134 ---GKIPSRTLYDTLI 146
G P Y T+I
Sbjct: 188 RGGGSPPDVVSYTTVI 203
>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
Length = 316
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + + V D M NG P+ + I EA ++ G PD
Sbjct: 55 YATEGNLVDMNNVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPD 114
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+ TYT V+DG CK+GR ++ M + I+ G++PN++ TLIH +
Sbjct: 115 IVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFY 174
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P TFN++I L GK+ +A L LM G P+ Y+T+I
Sbjct: 175 EMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMI 227
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEM------LMNVKN----DGLKP 49
C C EAR++ + M +G PN TY ++L Y + NVK+ +G++P
Sbjct: 19 CLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNVKDLMVQNGMRP 78
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
D + + + +CK GR +E N+ + G P++VT +
Sbjct: 79 DRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRF 138
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ID G P ITF +I GK +KA L + M + G P+ ++++I +L
Sbjct: 139 CQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRL 195
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------- 88
+ DG P+V TY+ +++ CK G E E+ N I+ G PN T
Sbjct: 1 MSRDGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGN 60
Query: 89 LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
L+ ++NV D+ G P FN I A C G++D+A L M + G +P Y T
Sbjct: 61 LVDMNNVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTT 120
Query: 145 LIKKL 149
+I L
Sbjct: 121 VIDGL 125
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ M D G PNV T+ + EA ++ + G KP+V +Y ++
Sbjct: 168 KAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMI 227
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNNVIQALCGV 117
G+ G EVM+LL++ + G+ PN V L L ++ IG P T +I + C
Sbjct: 228 HGYFIAGEVGEVMKLLDDMLLIGLKPNAVNLNTLLDGMLSIGLKPNVDTCKTLIDSCCED 287
Query: 118 GKIDKALLLL 127
+I+ L L
Sbjct: 288 DRIEDILTLF 297
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN+ T+TI EAY +L + + G PDV TYT ++D C G+ N
Sbjct: 257 GLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNA 316
Query: 71 MELLNEAIERGVTPNVVTLIHL------HNVIDI-----------GHIPRTITFNNVIQA 113
EL + P+ VT I L H +D G++P +TF +I A
Sbjct: 317 KELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDA 376
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC VGK+D+A L +M + G P+ Y+TLI
Sbjct: 377 LCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLI 409
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY +A K++ M +NG P V L EA++M +K L P
Sbjct: 516 CYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAP 575
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K GR E L I PN TI+FN
Sbjct: 576 TVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPN------------------TISFNT 617
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ LC G++D AL +LF M E P Y+T+I L ++
Sbjct: 618 LLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKE 660
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 25/139 (17%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+ + +KN G PDV+TY +D K G+ E+ +L E + RG PN +T HN
Sbjct: 807 AWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTIT----HN 862
Query: 95 VIDIGHI---------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
++ G + P T+ +I L +G++++A M ++
Sbjct: 863 IVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDY 922
Query: 134 GKIPSRTLYDTLIKKLDQQ 152
G +P+ LY+ L+ +Q
Sbjct: 923 GCMPNCPLYNILMNGFGKQ 941
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +D M G PN+ TY L EA E+ ++++ GL+
Sbjct: 378 CKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTA 437
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YTY +D + K G S + ++ + G+ PN+V L+++ + G +
Sbjct: 438 YTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNG 497
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT+N +++ G++D A+ LL M E+G P + ++LI L
Sbjct: 498 LKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTL 552
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-- 91
EA ++ + ++G+KP + TY+A+M K VM LL E G+ PN+ T
Sbjct: 210 EALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICI 269
Query: 92 ---------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L + D G P +T+ +I ALC GK++ A L M
Sbjct: 270 RILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHK 329
Query: 137 PSRTLYDTLIKKLD 150
P R Y TL+ K
Sbjct: 330 PDRVTYITLLDKFS 343
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTILE------AYEMLMNVKNDGLKPD 50
Y + +A K + M NG PN+ + Y++ E A E +K GL PD
Sbjct: 447 YGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPD 506
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +M + K GR ++ ++LL+E E G P VV + N++
Sbjct: 507 AITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVII------------------NSL 548
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I L ++D+A + M E P+ Y+TL+ L ++
Sbjct: 549 IDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKE 590
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA++ + M D G PN Y IL A E+ + +G++PD+ +Y+ ++
Sbjct: 911 EAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMV 970
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D C VG+ ++ + E G+ P++V +N +I L
Sbjct: 971 DCLCMVGKVDDALHYFEELKLSGLDPDLV------------------CYNLMINGLGRSQ 1012
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++AL L M G P Y+ LI L
Sbjct: 1013 RVEEALSLFDEMRNRGITPDLYTYNALILNL 1043
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PN T+ I+ +A ++ ++ + P +TY ++DG K+GR
Sbjct: 849 MLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGR 908
Query: 67 SNEVMELLNEAIERGVTPN----------------VVTLIHL-HNVIDIGHIPRTITFNN 109
E + E ++ G PN V T L ++ G P +++
Sbjct: 909 LEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSI 968
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ LC VGK+D AL + G P Y+ +I L +
Sbjct: 969 MVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRS 1011
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + D A ++ M G P++ +Y+I+ +A +K GL PD
Sbjct: 938 FGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPD 997
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ Y +++G + R E + L +E RG+TP++ T
Sbjct: 998 LVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYT 1035
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + D M + G P++ TY L EA +M ++ GL+P+V+TY A++
Sbjct: 1016 EALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALI 1075
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
G G + + + + G PN T L N
Sbjct: 1076 RGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQLPN 1111
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C +A + + +G P++ Y ++ EA + ++N G+ P
Sbjct: 972 CLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITP 1031
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
D+YTY A++ G E ++ E +G+ PNV T +N + GH
Sbjct: 1032 DLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFT----YNALIRGH 1078
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA+ +++ M D G P++TT+ L EA ++ V G+ P
Sbjct: 238 CLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSP 297
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYT+ +++ CKVG + + L E G TP+ +T+N
Sbjct: 298 DVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD------------------EVTYNT 339
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC +GK+ KAL LL M G S Y+T+I L
Sbjct: 340 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 379
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A I +G+ P+ TY A +++ + +G PD
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 228
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
V+TY V++ CK G+ E +LN+ ++RG P++ TLI L +D+
Sbjct: 229 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 288
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I ALC VG AL L M G P Y+TLI L
Sbjct: 289 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNL 344
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A ++ + M ++G P+ TY L +A ++L ++++ G
Sbjct: 310 CKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRST 369
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++DG CK R E E+ ++ +G++ N ITFN +I
Sbjct: 370 ITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN------------------AITFNTLI 411
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC KID A L+ M G P+ Y++++
Sbjct: 412 DGLCKDKKIDDAFELINQMISEGLQPNNITYNSIL 446
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 63/200 (31%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
V M G P+V T+ L A ML + + G+ PD T+T +M GF
Sbjct: 75 SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGF 134
Query: 62 -----------------------------------CKVGRSNEVMELLNEAIERGVTPNV 86
CK+GR + + + + I G P+
Sbjct: 135 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 194
Query: 87 VT-------------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
+T + H V+D+ GH P T+N V+ LC G++++A +L
Sbjct: 195 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 254
Query: 130 MYEHGKIPSRTLYDTLIKKL 149
M + G +P T ++TLI L
Sbjct: 255 MVDRGCLPDITTFNTLIAAL 274
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I EA E+ + G+ + T+ ++DG CK + ++ EL+N+ I G+ PN +T
Sbjct: 385 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 444
Query: 89 -LIHLHNVIDI-------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L H DI G +T+ +I LC G+ AL +L M G
Sbjct: 445 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 504
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+ +++ L
Sbjct: 505 MRPTPKAYNPVLQSL 519
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 42/166 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + D +A +++ M NG+ DV TY +++G
Sbjct: 449 YCKQGDIKKAADILETMTANGFEV------------------------DVVTYGTLINGL 484
Query: 62 CKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVID----------IGHIPRT 104
CK GR+ +++L +G+ P + +L +N+ D +G P
Sbjct: 485 CKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDA 544
Query: 105 ITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ V + LC G G I +A + M + G IP + + L + L
Sbjct: 545 LTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGL 590
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G+KPDV T+ +M C+ + + +L E RGV P+ T L
Sbjct: 84 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAA 143
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G +T N +I C +G+++ AL + G P + Y+T +
Sbjct: 144 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 203
Query: 149 LDQ 151
L Q
Sbjct: 204 LCQ 206
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++ D Y +++ + + + + +E RG+ P+VV
Sbjct: 49 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVV------------------ 90
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TFN +++ALC ++ A+L+L M G P T + TL++
Sbjct: 91 TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQ 132
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA V+D M G PN+ TY ++ +A E+L + + G +PD+
Sbjct: 187 CKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDI 246
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YT V+ G C R ++V L E +++ PN +TF+ ++
Sbjct: 247 VSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPN------------------EVTFDMLV 288
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ C G +++A+ +L M +HG P+ TL + +I + +Q
Sbjct: 289 RFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQ 329
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V+ M +G PN T I+ +AY+ L N+ G PD
Sbjct: 291 FCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 350
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YT V+ G C+ GR ELL E + + PN +TFN
Sbjct: 351 TISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN------------------EVTFNTF 392
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G I++A+ L+ LM E+G Y+ L+
Sbjct: 393 ICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALV 428
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNV 95
PD YTYT ++ G C GR + + LL++ ++RG P+VVT L NV
Sbjct: 139 PDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNV 198
Query: 96 ID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D G P +T+N +I +C G++D A +L + +G P Y T++K L
Sbjct: 199 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGL 256
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A +++ M N T+ +L EA E++ + G P++
Sbjct: 464 CHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNL 523
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
T+ ++DG K S E +ELL+ + +GV+ + +T + LH
Sbjct: 524 ITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHA 583
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V D+G P+ +N ++ ALC + D+A+ M +G +P+ + Y LI+ L +
Sbjct: 584 VQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHE 641
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 31/172 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + A++++ M PN T+ I +A +++ + G +
Sbjct: 362 CRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGI 421
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV-----IDIG 99
TY A++ GFC GR + +EL N PN +T L H + + G
Sbjct: 422 VTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAG 478
Query: 100 HIPR-----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I + +TFN ++ C G +++A+ L+ M EHG P+ ++TL+
Sbjct: 479 MIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLL 530
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA ++ + G PDVY T ++ C+ GR+++ +L A G +V
Sbjct: 55 LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFA--- 111
Query: 92 LHNVIDIGHI------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+N + G+ P T+ +I+ LC G++ AL LL M +
Sbjct: 112 -YNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQR 170
Query: 134 GKIPSRTLYDTLIKKL 149
G PS Y L++ +
Sbjct: 171 GCQPSVVTYTVLLEAV 186
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ N+ EA + D M G+ P+V TY L A +L ++ +P
Sbjct: 107 CHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQP 166
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
+V+ Y ++D CK + E L +E + +G++P++ T LIH L
Sbjct: 167 NVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLL 226
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLI 146
+ ++D +P ++FN V+ ALC GK+ +A ++ M + G +P+ Y+TLI
Sbjct: 227 NEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLI 281
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + A +++ M PNV Y + EA+ + + G+ PD+
Sbjct: 144 CKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDI 203
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
+TY +++ C + V LLNE ++ + P+VV+ + H+V+D
Sbjct: 204 FTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDK 263
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P I++N +I C + +IDKA+ L M IP Y TLI L
Sbjct: 264 MIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGL 319
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 22 GYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
G PN+ T IL EA + + +G +PDV TY +++G CKVG ++
Sbjct: 91 GIPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTS 150
Query: 69 EVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVI 111
+ LL +++ PNV T+I ++ G P T+N++I
Sbjct: 151 AAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLI 210
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
ALC + + LL M + +P ++T++ L ++
Sbjct: 211 HALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKE 251
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + EA V+D M G PNV +Y L +A + + L PD
Sbjct: 249 CKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPD 308
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
TY+ ++ G C V R + + L +E + PN+VT + L
Sbjct: 309 TVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLK 368
Query: 95 VIDIGHIPRTITFNNV-IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ ++ I NN+ I +C G+++ A L + G P Y +I L
Sbjct: 369 AIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGL 424
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 29/134 (21%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY IL EA +L ++ L PD+ +DG C+ G +L
Sbjct: 342 PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDL 401
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ +G+ P+V T++ +I LC G +D+A L M E+
Sbjct: 402 FSNLSSKGLQPDV------------------WTYSIMINGLCRRGLLDEASKLFREMDEN 443
Query: 134 GKIPSRTLYDTLIK 147
G + +Y+T+ +
Sbjct: 444 GCTLNGCIYNTITR 457
>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
Length = 346
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C+ + +A +++ M ++G PNV Y+ +L+ Y ++ + + G++PDV
Sbjct: 161 CDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDV 220
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT ++D CKVG++ + +++ + RG+ PNVV T+N +I
Sbjct: 221 VMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVV------------------TYNVLI 262
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+C G + +A+ +L M E G P Y+TLIK L
Sbjct: 263 NCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLS 301
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 28/151 (18%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PN +YT+L +A +L ++++ G++ DV TY ++ G C ++ +E
Sbjct: 112 RPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171
Query: 73 LLNEAIERGVTPNVVTLIHL-------HNVIDIGHI----------PRTITFNNVIQALC 115
L+ E E G+ PNVV L D+G + P + + +I +LC
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK KA ++ +M G P+ Y+ LI
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLI 262
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V+D M G PNV TY +L EA +L + G+ PDV
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDV 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIHLHNVIDIGHIPRTI 105
TY ++ G V +E M LL E + RG + + + I + G+I R +
Sbjct: 291 VTYNTLIKGLSDVLEMDEAMWLLEEMV-RGYIIQSSQQSAIAQESKTKSGYICRIV 345
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ +YT +M C R+++ + LL GV +VVT +
Sbjct: 112 RPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVT------------------Y 153
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ LC ++DKA+ L+ M E G P+ +Y +L++
Sbjct: 154 GTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + M + G P++ TY + +A ++L + + PDV
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI------- 98
TY A+++ F K G+ E EL +E + RG+ PN +T + N +D
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P ITFN +I CG +ID + LL M E G + T Y+TLI
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 25/150 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID + +G H +A + ++ G+ PD++TY +++ GFC GR ++ +L
Sbjct: 261 IIDSLCKDGRHS--------DAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L E +ER ++P+VVT L N ++ G IP TIT++++I C
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D A + +LM G P+ ++TLI
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLI 402
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + +A +++ M + P+V TY L EA E+ + G+ P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY++++DGFCK R + + +G +PN++T LI LH
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G + T T+N +I VG ++ AL LL M G P DTL+ L
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + + +PNVV TF +I C G++D L L
Sbjct: 565 ATQMFDSMGSKSFSPNVV------------------TFTTLINGYCKAGRVDDGLELFCE 606
Query: 130 MYEHGKIPSRTLYDTLI 146
M G + + Y TLI
Sbjct: 607 MGRRGIVANAITYITLI 623
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 30/156 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C ++ EA + MF+ PNV T+T I+EA +L + DGL+P
Sbjct: 160 CVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ 219
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH-IPRTITFNNV 110
TY ++DG CK+G + ++LL + E I H IP + ++ +
Sbjct: 220 ITYGTIVDGMCKIGDTVSALDLLRKMEE------------------ISHIIPNVVIYSAI 261
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +LC G+ A L M E G P Y+++I
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
GL PDV T+ ++ G C R +E + L ++ E PNVVT L N
Sbjct: 144 GLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEA 203
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLIK 147
+++ G P IT+ ++ +C +G AL LL M E IP+ +Y +I
Sbjct: 204 VALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIID 263
Query: 148 KL 149
L
Sbjct: 264 SL 265
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 39/190 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +N A + M G PN+ T+ T+++ Y E+L + GL D
Sbjct: 370 FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY ++ GF VG N ++LL E I G+ P++VT L + D G +
Sbjct: 430 TTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFK 489
Query: 102 -------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P T+N +I L GK +A L M G +P Y
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549
Query: 143 DTLIKKLDQQ 152
++I L +Q
Sbjct: 550 SSMIDGLCKQ 559
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++ D M + PNV T+T L + E+ + G+ +
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ GF KVG N +++ E I GV P+ +T+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
++ D+Y++T ++ FC + + + + G+ P+VVT
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVT------------------ 151
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
FN ++ LC ++ +AL L M+E P+ + TL+ L
Sbjct: 152 FNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGL 194
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR VI +M NG +PNV Y+ L +A +L +K GLKPD
Sbjct: 315 FCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPD 374
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT++++ C+ G+S+E +ELL E E G + ++TFN +
Sbjct: 375 AVTYTSLINFLCRNGKSDEAIELLEEMKENGCQAD------------------SVTFNVL 416
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ LC GK ++AL ++ + + G ++ Y ++ L Q+
Sbjct: 417 LGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQK 458
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 29/137 (21%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEVME 72
PNV + IL A+E++ ++N P++ TY+ +MDG C+ GR E +
Sbjct: 231 PNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFD 290
Query: 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
L E + R H+ +P +T+N +I C GK D+A ++ M
Sbjct: 291 LFEEMVSRD---------HI--------VPDPLTYNVLINGFCRGGKPDRARNVIQFMKS 333
Query: 133 HGKIPSRTLYDTLIKKL 149
+G P+ Y L+ L
Sbjct: 334 NGCYPNVYNYSALVDGL 350
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 66/190 (34%), Gaps = 64/190 (33%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ V+ + +G P+ TYT L EA E+L +K +G + D
Sbjct: 351 CKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADS 410
Query: 52 YTYTAVMDGFCKVGRSNEVM-----------------------------------ELLNE 76
T+ ++ G C+ G+ E + ELL
Sbjct: 411 VTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGL 470
Query: 77 AIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ RG P+ T N ++ LC G +D A + LF + E G
Sbjct: 471 MLRRGFQPHYA------------------TSNELLVCLCKAGMVDDAAVALFDLVEMGFQ 512
Query: 137 PSRTLYDTLI 146
P ++ LI
Sbjct: 513 PGLETWEVLI 522
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+K+ M + P V TYT L EA + +K G++P+V
Sbjct: 203 CRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNV 262
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDG CK GRS + MEL + RG PN+V T+ +I
Sbjct: 263 FTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMV------------------TYTTLI 304
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC KI +A+ LL M G P LY +I
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVI 339
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ + M G PN+ TYT L EA E+L + GLKPD
Sbjct: 273 CKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDI------------ 98
Y V+ GFC V + E L+E I G+TPN +T IH+ ++
Sbjct: 333 GLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCTNYPSRA 392
Query: 99 ----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G T +++++ LC G+ KA+ L+ + G IP++ + LI
Sbjct: 393 FTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIPNKGTWKLLI 450
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G PD YTY ++ G C+ GR +E +L E +E+ P VVT L N +
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEA 246
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G P T+++++ LC G+ +A+ L +M G P+ Y TLI
Sbjct: 247 MRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITG 306
Query: 149 LDQQ 152
L ++
Sbjct: 307 LCKE 310
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 30/153 (19%)
Query: 9 FEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTYTAV 57
F++ +V M D P+ Y T+L A++ N++ GL P V + +
Sbjct: 103 FDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVL 162
Query: 58 MDGFCK-VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
+ C+ G + +++ +E +RG P+ + T+ +I LC
Sbjct: 163 IKALCRNDGTVDAGLKIFHEMPKRGCDPD------------------SYTYGTLISGLCR 204
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ID+A L M E P+ Y +LI L
Sbjct: 205 FGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL 237
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 30/177 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C K + +A ++++ M G+ P V TY + EAY + K+ ++
Sbjct: 598 CKCGKVN--KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+V Y++++DGF KVGR +E +L E +++G+TPN+ T L+
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ P +T+ +I LC V K +KA + M + G PS Y T+I L
Sbjct: 716 QSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+ R + + + + P+ +Y+IL E YE+ ++K G D Y V+
Sbjct: 535 KGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR-------------- 103
DGFCK G+ N+ +LL E +G P VVT +VID + I R
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVT---YGSVIDGLAKIDRLDEAYMLFEEAKSK 651
Query: 104 -----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L+L + + G P+ +++L+ L
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDAL 702
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + GY P V +T L A +L +K+ L D+ Y +D F KVG+
Sbjct: 194 MQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGK 253
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIG-----------HIPRTITFNN 109
+ + +E G+ P+ VT + N +D +P T +N
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I GK D+A LL G IPS Y+ ++
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 27/156 (17%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+ TYT + EA EM +++ + P Y Y ++ G+ G+ +E
Sbjct: 267 NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDE 326
Query: 70 VMELLNEAIERGVTPNVV------TLIHLHNVIDIG----------HIPRTITFNNVIQA 113
LL +G P+V+ T + +D P T+N +I
Sbjct: 327 AYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDM 386
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK+D A L M + G P+ + ++ +L
Sbjct: 387 LCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ + G PN+ T+ L EA ++K P+ TY ++
Sbjct: 675 EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G CKV + N+ E ++G+ P+ TI++ +I L G
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPS------------------TISYTTMISGLAKAG 776
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
I +A L +G +P Y+ +I+ L
Sbjct: 777 NIAEAGALFDRFKANGGVPDSACYNAMIEGLS 808
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 30/149 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA KV + M + PN++TY IL A+E+ +++ GL P+V T ++
Sbjct: 361 EALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMV 419
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D CK + +E + E + TP+ ITF ++I L VG
Sbjct: 420 DRLCKSQKLDEACAMFEEMDYKVCTPD------------------EITFCSLIDGLGKVG 461
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D A + M + + +Y +LIK
Sbjct: 462 RVDDAYKVYEKMLDSDCRTNSIVYTSLIK 490
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A KV + M D+ N YT L + +++ ++ N PD+ M
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYM 524
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
D K G + + E R P+ + LIH +++ + G +
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCV 584
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T +N VI C GK++KA LL M G P+ Y ++I L
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ G P+V Y + EA ++ +K D P+
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APN 376
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++D C+ G+ + EL + + G+ PNV T+ N +
Sbjct: 377 LSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTV------------------NIM 418
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ LC K+D+A + M P + +LI L +
Sbjct: 419 VDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C+ + +A +++ M ++G PNV Y+ +L+ Y ++ + + G++PDV
Sbjct: 161 CDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDV 220
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT ++D CKVG++ + +++ + RG+ PNVV T+N +I
Sbjct: 221 VMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVV------------------TYNVLI 262
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+C G + +A+ +L M E G P Y+TLIK L
Sbjct: 263 NCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + KV M + G P+V YT L +A+ ++ + GL+P+
Sbjct: 195 YCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPN 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI----- 101
V TY +++ CK G E + +L + E+GV P+VVT LI L +V+++
Sbjct: 255 VVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLE 314
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TFN+VIQ LC +G++ +A + +M E G + + Y+ LI L
Sbjct: 315 EMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+D M G PNV TY +L EA +L + G+ PDV TY ++
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLI 297
Query: 59 DGFCKVGRSNEVMELLNEAIERG---VTPNVVTLIH-LHNVIDIGHIPRT---------- 104
G V +E M LL E + RG V PNVVT + + DIG + +
Sbjct: 298 KGLSDVLEMDEAMWLLEEMV-RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEET 356
Query: 105 ------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+T+N +I L V K+ KA+ L+ M G P Y LIK
Sbjct: 357 GCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIK 405
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN +YT+L +A +L ++++ G++ DV TY ++ G C ++ +EL
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 74 LNEAIERGVTPNVVTLIHLHNVI-------DIGHI----------PRTITFNNVIQALCG 116
+ E E G+ PNVV L D+G + P + + +I +LC
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK KA ++ +M G P+ Y+ LI
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLI 262
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML--MNVKNDGL 47
C C + EA V+ M + G P+V TY L EA +L M + +
Sbjct: 264 CMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIV 323
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV----- 95
KP+V T+ +V+ G C +GR + ++ E G N+VT L+ +H V
Sbjct: 324 KPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAME 383
Query: 96 -----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+G P + T++ +I+ C + ++D+A LL M + G P Y L+ +
Sbjct: 384 LMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMC 443
Query: 151 QQ 152
+Q
Sbjct: 444 EQ 445
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A +V M + G N+ TY +L +A E++ + + GL+PD
Sbjct: 338 CDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDS 397
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------------HLHNV 95
+TY+ ++ GFCK+ + + +LL+ +RG+ P + I +L N
Sbjct: 398 FTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNE 457
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D + ++ +I C G + A LL + + G P Y +I
Sbjct: 458 MDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVI 508
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++D M G P+ TY+IL A ++L +++ G++P+++ Y ++
Sbjct: 380 KAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
C+ G L NE ++ +VV T+IH L +++D G
Sbjct: 440 VAMCEQGMMERARNLFNE-MDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLT 498
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +T++ VI G ++ A +L M G +P ++D+LI+
Sbjct: 499 PDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQ 544
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A++++ + D G P+ TY+I+ A +L + G PDV
Sbjct: 477 CKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDV 536
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+ +++ G+ G N+V+EL+ E I + +
Sbjct: 537 AVFDSLIQGYSTKGEINKVLELIREMITKNI 567
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + M DN + +V Y+ + A E+L ++ ++GL PD
Sbjct: 443 CEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDA 501
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ V++ F K G +L + G P+V F+++I
Sbjct: 502 VTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVA------------------VFDSLI 543
Query: 112 QALCGVGKIDKALLLL 127
Q G+I+K L L+
Sbjct: 544 QGYSTKGEINKVLELI 559
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ +YT +M C +++ + LL GV +VVT +
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVT------------------Y 153
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ LC ++DKA+ L+ M E G P+ +Y +L++
Sbjct: 154 GTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193
>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 418
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V D + G P+V +Y L E +++ + G++PD
Sbjct: 146 FCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL E + +G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G +++A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLI 318
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 28/156 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +V M P++ TY L +A++++ + GLKPD TYT ++D
Sbjct: 260 AMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLID 319
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIP 102
G CK G + E I+ + + V L ++ G P
Sbjct: 320 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKP 379
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
T T+ +I C G + K LL M G PS
Sbjct: 380 DTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPS 415
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
++A +M+ + + GLKPD TYT +++ FCK G + +LL E G P+VVT
Sbjct: 363 VDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--- 101
G +Y + +M FCK G + + + G+ P+VV+ L N I +G +
Sbjct: 131 GYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEG 190
Query: 102 -------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T++ +I LC K+D A L M G +P+ + TLI
Sbjct: 191 FKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLI 248
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + P+V ++ L E + + + G++PD
Sbjct: 146 FCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + +E E+LNE ++ G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLI 318
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C + D +AR +++ M G P+ TYT L +E+ + + ++ D
Sbjct: 287 CRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDE 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYTA++ G C+ GR+ + ++L E + G+ P D G T+ ++
Sbjct: 347 VTYTALISGLCREGRAGDAEKMLREMLTVGLKP------------DNG------TYTMIM 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C G + A LL M +G +P
Sbjct: 389 NEFCKTGDVKTASKLLREMQRNGPVPG 415
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++++ M DNG PN T+T L A E+ + + G PD+
Sbjct: 217 CKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDL 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGHIPRT- 104
TY ++ G C+ G + +L+ E I +G+ P+ +T L ++I R
Sbjct: 277 ITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKR 336
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ +I LC G+ A +L M G P Y ++ +
Sbjct: 337 MIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEF 391
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 29/158 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
F RKV++++ Y V + ILE G P +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLRYFRLVWGFYKEILEC----------GYPPSLYFFNILMHRFCKEG 150
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFN 108
+ + + + P+VV+ L N I +G + P T++
Sbjct: 151 EMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYS 210
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC K+D+A +L M ++G +P+ + TLI
Sbjct: 211 VLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLI 248
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 34/179 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKND------ 45
C ++ EA ++ M G P+V TY L A ++ + ND
Sbjct: 150 CMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEI 209
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------- 91
KP+V TY ++DG CKVGR +E +L E +G+ P+++ +LIH
Sbjct: 210 NCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEES 269
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L ++D G P +TFN +I LC GK+ +A LL +M E G +P Y++LI+
Sbjct: 270 KRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIE 328
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+++++D M D G P++ T+ +L EA ++L + G+ PD
Sbjct: 260 FCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 319
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
+ TY ++++GFC VG N EL +G P+V++ + L+N
Sbjct: 320 LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYN 379
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
++ +G P IT++++++ + GK+D A L +M HG
Sbjct: 380 EMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHG 420
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A+K+ M +G N TY I EA ++ +K+ K ++ ++
Sbjct: 408 DAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLI 467
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG CK G+ EL + G PNVVT + +I C G
Sbjct: 468 DGLCKAGKLETAWELFEKLSNEGHEPNVVT------------------YTIMIHGFCREG 509
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++DKA +L+ M +G P Y+TL++
Sbjct: 510 QVDKANVLIQKMEANGCTPDIITYNTLMR 538
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ + + + G+ PNV TYTI+ +A ++ ++ +G PD+
Sbjct: 471 CKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDI 530
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY +M GF + + EV++LL+ ++ V+P+ +T
Sbjct: 531 ITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAIT 567
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + FEA K+ + + + + L A+E+ + N+G +P+V
Sbjct: 436 CKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNV 495
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYT ++ GFC+ G+ ++ L+ + G TP+++T
Sbjct: 496 VTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIIT 532
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 26 NVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
NVT L + ++M P + ++ ++ G K+ ++V L N+ G++ +
Sbjct: 47 NVTATHALHFFHLMMRSTP---TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSD 103
Query: 86 VVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
TL L N ++ G+ P +T+N +I+ LC +I +A L
Sbjct: 104 RCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFL 163
Query: 129 LMYEHGKIPSRTLYDTLIKKL 149
M + G P Y TLIK L
Sbjct: 164 RMQKLGCTPDVVTYGTLIKGL 184
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKND----------GLKPD 50
+C D AR++ M G P+V +Y +L Y + V+ G +P+
Sbjct: 330 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPN 389
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
V TY +++ G G+ ++ +L + G+ N T + L
Sbjct: 390 VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFT 449
Query: 95 VIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + I N +I LC GK++ A L + G P+ Y +I
Sbjct: 450 ELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMI 502
>gi|449508786|ref|XP_004163411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 28/158 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P++ TYTIL EA ++ + +G KPD + Y +M G+C VGR E
Sbjct: 226 GAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGAEA 285
Query: 71 MELLNEAIERGVTPNVVTLIHL-------------HNVIDI----GHIPRTITFNNVIQA 113
+ + + E G+ P+VVT L N +DI GH P +T+ +++
Sbjct: 286 IGVYKKMKEVGLEPDVVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNG 345
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+C G AL LL M G P+ Y+TL+ L +
Sbjct: 346 MCREGNALGALSLLKEMEAKGCNPNSCTYNTLLHGLSK 383
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 21 NGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80
+G P+ T ++ + ++ +G PD T + C VG +E +EL+ E ++
Sbjct: 133 SGNRPDSTLASVQQILNFMVT---NGFNPDKVTADLAVRSLCSVGLVDEAVELVKELSQK 189
Query: 81 GVTPNVVTLIHL-------------HNVI-----DIGHIPRTITFNNVIQALCGVGKIDK 122
P++ T HL +N I G P +T+ +I +C + +
Sbjct: 190 HTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLRE 249
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIK 147
A+ L+ L+Y+ G P +Y+T++K
Sbjct: 250 AMRLVSLLYKEGFKPDCFVYNTIMK 274
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 41/131 (31%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
EAR +D M + G+ P+ TYT++M+G C+ G +
Sbjct: 319 EARNFLDIMAEMGHFPDAV------------------------TYTSLMNGMCREGNALG 354
Query: 70 VMELLNEAIERGVTPNVV---TLIH-------LHNVIDIGHIPR-------TITFNNVIQ 112
+ LL E +G PN TL+H L I++ + + T +++ ++
Sbjct: 355 ALSLLKEMEAKGCNPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSCDMKLETASYSTFVR 414
Query: 113 ALCGVGKIDKA 123
ALC G+I +A
Sbjct: 415 ALCRSGRIAEA 425
>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
Length = 225
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C+ + +A +++ M ++G PNV Y+ +L+ Y ++ + + G++PDV
Sbjct: 40 CDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDV 99
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT ++D CKVG++ + +++ + RG+ PNVV T+N +I
Sbjct: 100 VMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVV------------------TYNVLI 141
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+C G + +A+ +L M E G P Y+TLIK L
Sbjct: 142 NCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLS 180
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A +L ++++ G++ DV TY ++ G C ++ +EL+ E E G+ PNVV L
Sbjct: 12 QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLL 71
Query: 93 ------HNVIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
D+G + P + + +I +LC VGK KA ++ +M G
Sbjct: 72 QGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLE 131
Query: 137 PSRTLYDTLI 146
P+ Y+ LI
Sbjct: 132 PNVVTYNVLI 141
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V+D M G PNV TY +L EA +L + G+ PDV
Sbjct: 110 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDV 169
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIHLHNVIDIGHIPRTI 105
TY ++ G V +E M LL E + RG + + + I + G+I R +
Sbjct: 170 VTYNTLIKGLSDVLEMDEAMWLLEEMV-RGYIIQSSQQSAIAQESKTKSGYICRIV 224
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN+ +A +++ M G +P+ TY +L A+ +L ++ DGL D
Sbjct: 369 FCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIAD 428
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY A+++ CK GR+++ L + RG+ PN V TFN++
Sbjct: 429 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAV------------------TFNSL 470
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC GK D A L M G P Y + I+ L
Sbjct: 471 INGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHL 509
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 30/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C + EA +++ MF+ G P V T T ++ AY +L +K G KP+V
Sbjct: 300 CRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 359
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--LIHLHNVIDIGHIPRTI---- 105
+TY A++ GFC G+ ++ M LLN+ GV P+ VT L+ ID GHI
Sbjct: 360 WTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCID-GHIESAFRLLR 418
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I ALC G+ D+A L + G P+ +++LI L
Sbjct: 419 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 474
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E ML +K G +P Y AV+D C+ ++ E E+L E E+G+ P VVT +
Sbjct: 272 EGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVI 331
Query: 94 N-------------VIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N V+++ G P T+N ++Q C GK+ KA+ LL M G
Sbjct: 332 NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN 391
Query: 137 PSRTLYDTLIK 147
P Y+ LI+
Sbjct: 392 PDAVTYNLLIR 402
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C +A + D + G PN T+ L A++ L + + G PD
Sbjct: 440 CKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDT 499
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVI---DIGHIPRT--- 104
YTY++ ++ CK+ S E + + E +++ V P+ V I +H ++ + G + RT
Sbjct: 500 YTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGE 559
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+ ++A C G++++A +L M ++G Y+TL+
Sbjct: 560 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 611
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +PD YT+ +++ G+C+ + + +L ++ RG +VV
Sbjct: 183 GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVV------------------ 224
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +I+ LC G+ID+A+ L M + P +Y L+K L
Sbjct: 225 SYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGL 264
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 45/174 (25%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G +P+V TYT + EA +LM + +G+ D Y +MDG +G+
Sbjct: 560 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 619
Query: 67 SNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI--------------------- 98
++ + +L + PN T L+ + V D+
Sbjct: 620 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLF 679
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P + T++++++ G+ ++A L+ LM E + +Y L+
Sbjct: 680 DVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALV 733
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + +A ++ M +G+ P + +Y L +A E+ MN + P
Sbjct: 735 CFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSP 794
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELL 74
D + ++DG K G S+ E++
Sbjct: 795 DEIVWKVIIDGLIKKGHSDISREMI 819
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTL------ 89
+K + P+ TY+++++GF + GR+ E L++ E ++ N +VT
Sbjct: 682 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKR 741
Query: 90 -----IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL----FLMYEHGKIPSRT 140
+ + ++I G IP+ +++ +++ L G+ DKA + + Y +I +
Sbjct: 742 YLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKV 801
Query: 141 LYDTLIKK 148
+ D LIKK
Sbjct: 802 IIDGLIKK 809
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+ D M N + PN TY+ + EA ++ +K D + + YTA++ FC
Sbjct: 678 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 737
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
K R + L+ I+ G P +++ HL
Sbjct: 738 KSKRYLDAWVLVCSMIQHGFIPQLMSYQHL 767
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+K D AR++ + M G + T+T L EA +L + + GL D
Sbjct: 367 FCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVD 426
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
V TYT ++DG+CK G E + NE + R V PNVVT LH
Sbjct: 427 VVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLH 486
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G T+N++I LC G +++A+ ++ M G Y TLI L
Sbjct: 487 EMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTL 542
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A +++ M G+ +V TYT L A+ ML + + G+KP +
Sbjct: 508 CKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSI 567
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDIGHI--- 101
TY +M+GFC GR +LL +E+ V PNVVT L N+ I
Sbjct: 568 ATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKG 627
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+N +I+ C + +AL M E G + + Y LI+ L+++
Sbjct: 628 MHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKK 685
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC + + A K++D M G N T YT + +A +L ++ G+ D
Sbjct: 297 YCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALD 356
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+T V+ GFC G L E +RG+ + VT LI+ L
Sbjct: 357 AVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQ 416
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++D G +T+ +I C G + +A + M P+ Y L L +Q
Sbjct: 417 EMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQ 475
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDV TY ++ G+C G ++LL+E +G+ N +
Sbjct: 285 PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNAT------------------VYT 326
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+VI LC G++ AL +L M HG ++ T+I
Sbjct: 327 SVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVI 364
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C +K++++M + PNV TY ++++ Y + N+K + + P+
Sbjct: 577 FCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPN 636
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TY ++ G CK E + E IE+G+
Sbjct: 637 ENTYNILIKGHCKARNMKEALYFHQEMIEKGL 668
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA++++D M G P++ YT L A +L + + G PDV
Sbjct: 248 CKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDV 307
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDIGHI--- 101
TYT V+D CKVGR ++ E+ E + +PNVVT L V + G +
Sbjct: 308 VTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMRE 367
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL---IKKLDQQP 153
P +T+N +I L V + ++A + M E G +P Y L ++ +DQ P
Sbjct: 368 MACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRMIDQPP 426
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ AR VI + P+V TY L EA + +G P +
Sbjct: 143 CKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTL 202
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
++ A++ G C+ R + +E+ NE I+R PN+VT L
Sbjct: 203 VSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDR 262
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P + + ++ G++D AL LL M G IP Y +I KL
Sbjct: 263 MVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKL 317
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 30/138 (21%)
Query: 24 HPNVTTYTIL-----------EAYEMLMN-VKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
P+V +YT L A+++ V G +P+ +TY A++DG CK R +
Sbjct: 93 QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAAR 152
Query: 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
++ EA +R P+VV T+N ++ AL +G++D+AL M
Sbjct: 153 AVITEARKRDFAPDVV------------------TYNTLMAALFQLGRVDEALATFTQMT 194
Query: 132 EHGKIPSRTLYDTLIKKL 149
E G +P+ ++ +I L
Sbjct: 195 EEGYVPTLVSFNAIITGL 212
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------L 89
L TY ++ GFC + LL E G+ N T L
Sbjct: 21 LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQAL 80
Query: 90 IHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIK 147
H +++ H P +++ +I LC +G++D A L M G P+ Y+ L+
Sbjct: 81 EHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVD 140
Query: 148 KLDQQ 152
L +Q
Sbjct: 141 GLCKQ 145
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN A +++ M PNV T+ +L EA E++ + G P++
Sbjct: 468 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 527
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY ++DG K S E +ELL+ + GV+P++VT + H
Sbjct: 528 ITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHI 587
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V D+G P+ + +N ++ ALC D A+ M +G +P+ Y TLI+ L +
Sbjct: 588 VQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 645
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F +A +V+D M G PN+ TY ++ +A E L + + G +PD
Sbjct: 191 CKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDT 250
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI--- 98
+YT V+ G C R +V EL E +E+ PN VT L I +
Sbjct: 251 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 310
Query: 99 --GH--IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GH T N VI +C G++D A L M +G P Y T++K L
Sbjct: 311 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ EA ++D M G P+V TYT+L +A E+L ++ G P++
Sbjct: 156 CDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNI 215
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY +++G C+ GR ++ E LN G P+ V+ +
Sbjct: 216 VTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAE 275
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ +P +TF+ +++ C G +++A+ +L M HG + TL + +I + +Q
Sbjct: 276 MMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ 333
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 32/155 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A +I+ M ++G N+ TY L A E+ ++ KP+
Sbjct: 401 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNT 457
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C R + ELL E +++ PNVV TFN ++
Sbjct: 458 ITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVV------------------TFNVLV 499
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G +D+A+ L+ M EHG P+ Y+TL+
Sbjct: 500 SFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 534
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC AR++I M P+ TYT + EA +L ++ + G +P
Sbjct: 123 YCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPS 179
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TYT +++ CK + ME+L+E +G TPN+VT +I+ L+
Sbjct: 180 VVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN 239
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P T+++ V++ LC + + L M E +P+ +D L++
Sbjct: 240 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 293
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V++ M +G N T I+ +A++ L N+ + G PD
Sbjct: 295 FCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPD 354
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YT V+ G C+ R + ELL E + + PN +TFN
Sbjct: 355 TISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN------------------EVTFNTF 396
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G I++A +L+ M EHG + Y+ L+
Sbjct: 397 ICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALV 432
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA ++ + G PDVY T ++ C+ GR+++ +L A G +V
Sbjct: 59 LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFA--- 115
Query: 92 LHNVIDIGHI------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+N + G+ P T+ +I+ LC G++ +AL LL M
Sbjct: 116 -YNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174
Query: 134 GKIPSRTLYDTLIKKL 149
G PS Y L++ +
Sbjct: 175 GCQPSVVTYTVLLEAV 190
>gi|449434442|ref|XP_004135005.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 28/158 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P++ TYTIL EA ++ + +G KPD + Y +M G+C VGR E
Sbjct: 226 GAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGAEA 285
Query: 71 MELLNEAIERGVTPNVVTLIHL-------------HNVIDI----GHIPRTITFNNVIQA 113
+ + + E G+ P+VVT L N +DI GH P +T+ +++
Sbjct: 286 IGVYKKMKEVGLEPDVVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNG 345
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+C G AL LL M G P+ Y+TL+ L +
Sbjct: 346 MCREGNALGALSLLKEMEAKGCNPNSCTYNTLLHGLSK 383
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 21 NGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80
+G P+ T ++ + ++ +G PD T + C VG +E +EL+ E ++
Sbjct: 133 SGNRPDSTLASVQQILNFMVT---NGFNPDKVTADLAVRSLCSVGLVDEAVELVKELSQK 189
Query: 81 GVTPNVVTLIHL-------------HNVI-----DIGHIPRTITFNNVIQALCGVGKIDK 122
P++ T HL +N I G P +T+ +I +C + +
Sbjct: 190 HTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLRE 249
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIK 147
A+ L+ L+Y+ G P +Y+T++K
Sbjct: 250 AMRLVSLLYKEGFKPDCFVYNTIMK 274
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 41/131 (31%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
EAR +D M + G+ P+ TYT++M+G C+ G +
Sbjct: 319 EARNFLDIMAEMGHFPDAV------------------------TYTSLMNGMCREGNALG 354
Query: 70 VMELLNEAIERGVTPNVV---TLIH-------LHNVIDIGHIPR-------TITFNNVIQ 112
+ LL E +G PN TL+H L I++ + + T +++ ++
Sbjct: 355 ALSLLKEMEAKGCNPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSCDMKLETASYSTFVR 414
Query: 113 ALCGVGKIDKA 123
ALC G+I +A
Sbjct: 415 ALCRSGRIAEA 425
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G+ P++ Y ++ EA E+L + +DG+ PD TYT+++ + GR
Sbjct: 505 MLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGR 564
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIHLH--------------NVIDIGHIPRTITFNN 109
+ E+ E + +G+TP+VVT LIH H + + G +P IT+N+
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+I LC V ++D+A M E G P++ Y LI +
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINE 663
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
YC + +A + D + P + TY T+L+ A ++ + + N+G+ PD
Sbjct: 384 YCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPD 443
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-------TPNVVTLIHL----------H 93
+ TYT +++G CK+G + E +E + G+ +V + L
Sbjct: 444 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQE 503
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P I +N V+ LC +G +++A LL M G IP Y ++I
Sbjct: 504 EMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSII 556
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K +F +A+ +I M G + TY L EA + + G P V T
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----LHNVI---------- 96
Y + + G CK+GR ++ M+ L++ + + P+VV TLI+ L N++
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I P +T+N ++ LC G+++ A L M G P Y L+
Sbjct: 402 SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+ + G+KP + TY ++D +CK G+ + ++LL+E RG PN VT L
Sbjct: 217 KAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLI 276
Query: 94 NVID-----------IGHIPRT------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N + IG + +T T+N +I G + +AL L M G
Sbjct: 277 NGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGAS 336
Query: 137 PSRTLYDTLIKKL 149
P+ Y++ I L
Sbjct: 337 PTVATYNSFIYGL 349
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G PNV TY L +AY + G+ P+ Y+YT +++ C +G
Sbjct: 610 MQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGN 669
Query: 67 SNEVMELLNEAIERGVTPNVVT 88
E + L + ++RGV P+ T
Sbjct: 670 WQEALSLYKQMLDRGVQPDSCT 691
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P +T+N ++ + C GK+ + L LL M G P+ Y+ LI L ++
Sbjct: 227 EFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKK 282
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 81/211 (38%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M + G PN TYT L A+E++ +K +G P+
Sbjct: 332 YCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPN 391
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------ 92
+YTY A++ GFCK G+ + ++L A +G+ P+ VT L
Sbjct: 392 IYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFN 451
Query: 93 -------HNVID---------------------------IGHIPRTITFNNVIQALCGVG 118
H ID IG +P T+ ++I C VG
Sbjct: 452 QMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVG 511
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K AL + M +HG +P Y LI L
Sbjct: 512 KSTSALKVFERMVQHGCLPDPITYGALISGL 542
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C + +A V++ M G PNV T+T L A+ + + VK+ KP+
Sbjct: 262 CKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPN 321
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH-------------N 94
V+TYT ++ G+CK G+ LL +E+G+ PN TLI H N
Sbjct: 322 VHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMN 381
Query: 95 VIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G +P T+N +I C GKI +A +L + G P + Y LI + +Q
Sbjct: 382 KMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQ 440
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + F + + M + G PNV YT + +A+ +L + GLKP+
Sbjct: 226 FCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPN 285
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYT+T+++DG CK+G + L L V + P T+ +
Sbjct: 286 VYTHTSLIDGLCKIGWTERAFRLF-----------------LKLVKSSSYKPNVHTYTVM 328
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C GK+ +A +LL M E G P+ Y TLI
Sbjct: 329 IGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 29/147 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPD 50
+C + A + + M +N HP++ TYT + A ++ + GL P
Sbjct: 437 HCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPT 496
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT+++ G+C+VG+S +++ ++ G P+ IT+ +
Sbjct: 497 KQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPD------------------PITYGAL 538
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIP 137
I LC ++++A L M + +P
Sbjct: 539 ISGLCKESRLEEARALFETMLDKHMVP 565
Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +++++ D G P TYT + A ++ + G PD
Sbjct: 472 YCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPD 531
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
TY A++ G CK R E L +++ + P VT + L
Sbjct: 532 PITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTL 573
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EA V+ M D G P++ +Y IL +A ++ +K +G+ PD TY
Sbjct: 342 FIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGC 401
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPR------------ 103
++ G+C VG+ + LL E + PN T I LH++ ++G I
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKG 461
Query: 104 ----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
T+T N ++ LCG G++DKA+ ++ M HG L ++ I +D
Sbjct: 462 YGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD 512
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + AR++ D M + G PN T+ IL + E+L ++++ G+ P+
Sbjct: 158 CDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNK 217
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI--- 101
Y ++ FC+ GR+++ +L+ + E G+ P++VT L V+D I
Sbjct: 218 VVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSD 277
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +IT+N +++ C VG ++ A L + E+ + S Y+ ++ L
Sbjct: 278 MELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGL 336
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V D + +N P++ TY+ L EA + + + L+PD Y + FC
Sbjct: 511 VDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFC 570
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID----IGHIPRTI 105
K G+ + +L + ++G ++ T + +H ++D G P
Sbjct: 571 KQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNIC 630
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
T+N IQ LC GK++ A LL M + P+ + LI + P
Sbjct: 631 TYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVP 678
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P+ YT+ ++ C + EL +E E+G PN
Sbjct: 142 GISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPN------------------EF 183
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TF +++ C G DK L LL M G +P++ +Y+T++
Sbjct: 184 TFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIV 224
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A +V+ M G H ++ TY I E + ++ ++ G+ P+
Sbjct: 569 FCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPN 628
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+ TY + C+ G+ + LL+E +++ + PNV + +L
Sbjct: 629 ICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYL 670
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 16/167 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ A+ ++ M N PN T IL EA E+L + G D
Sbjct: 406 YCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLD 465
Query: 51 VYTYTAVMDGFCKVGRSNEVMELL-----NEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
T ++DG C G ++ +E++ + + G N + ++I+ +P I
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLI 525
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T++ ++ LC G+ +A L M P Y+ I +Q
Sbjct: 526 TYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQ 572
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 31/159 (19%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYT 53
KN FE ++D M + G PN+ TY + +A +L + + P+V++
Sbjct: 607 KNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFS 666
Query: 54 YTAVMDGFCKV---GRSNEVME---------------LLNEAIERGVTPNVVTLIHLHNV 95
+ ++ FCKV + EV E + NE + G L L V
Sbjct: 667 FKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATEL--LEAV 724
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+D G T + +++ +LC +++ A +L M + G
Sbjct: 725 LDRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDKG 763
Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 69/216 (31%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKND---G 46
C +ND ++ K+++ M + G P++ T+ +L+A + +++ D G
Sbjct: 228 CREGRND--DSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLG 285
Query: 47 L-KPDVYTYTAVMDGFCKVG------------RSN-----------------------EV 70
L +P+ TY ++ GFCKVG R N E
Sbjct: 286 LPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEA 345
Query: 71 MELLNEAIERGVTPNVVTL-IHLHNVIDIGHI----------------PRTITFNNVIQA 113
+L + I++G+ P++ + I + + +G + P +T+ ++
Sbjct: 346 ETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHG 405
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C VGK+D A LL M + +P+ + L+ L
Sbjct: 406 YCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSL 441
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN A +++ M PNV T+ +L EA E++ + G P++
Sbjct: 465 CNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNL 524
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY + DG K S + +ELL+ + +GV+P+V+T + H
Sbjct: 525 ITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHL 584
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
DIG P+ + +N ++ LC +ID A+ L M +G +P+ + Y LI+ L ++
Sbjct: 585 AQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLARE 642
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ +A ++D M G PNV TYT+L +A +L ++ G P++
Sbjct: 153 CDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNI 212
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY +++G C+ GR ++ +LLN G P+ V+ L
Sbjct: 213 VTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAE 272
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ +P +TF+ +I+ C G +++A+ +L M EH + TL + +I + +Q
Sbjct: 273 MMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQ 330
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F +A V+D M G PN+ TY ++ +A ++L + + G +PD
Sbjct: 188 CKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDT 247
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITF--- 107
+YT ++ G C R ++V EL E +E+ PN VT + + G + R I
Sbjct: 248 VSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQ 307
Query: 108 -------------NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N VI ++C G++D A L M +G P Y T++K L
Sbjct: 308 MTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGL 362
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 32/159 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC AR++I M P+ TYT + +A +L ++ G +P+
Sbjct: 120 YCRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPN 176
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT +++ CK + M +L+E +G TPN+V T+N +
Sbjct: 177 VVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIV------------------TYNVI 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +C G++D A LL ++ +G P Y TL+K L
Sbjct: 219 INGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGL 257
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A++ L N+ + G PD +YT V+ G C+ R N+ ELL E + PN
Sbjct: 335 DAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPN-------- 386
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+TFN I LC G I++A++L+ M EHG Y+ L+
Sbjct: 387 ----------EVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALV 429
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 32/154 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A +I+ M ++G V TY L A E+ ++ KP+
Sbjct: 398 CQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNT 454
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C R + EL+ E + R PNVV TFN ++
Sbjct: 455 ITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVV------------------TFNVLV 496
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
C G +D+A+ L+ M EHG P+ Y+TL
Sbjct: 497 NFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTL 530
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 40 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI------ 90
++ DG PDVY T ++ C+ GR+++ +L A G +V TL+
Sbjct: 64 LSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRY 123
Query: 91 -HLHNVID-IGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
HL IG + P T+ +I+ LC G++ AL LL M G P+ Y L
Sbjct: 124 GHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVL 183
Query: 146 IKKL 149
++ +
Sbjct: 184 LEAM 187
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ +A +V+D + +P+V T T+L +A ++ ++ G KPDV
Sbjct: 182 CDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDV 241
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY ++ GFCK GR +E + L + G +V++ + L
Sbjct: 242 VTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLAT 301
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G P +TFN +I LC G + KAL +L +M +HG P+ ++ LI+
Sbjct: 302 MLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQ 354
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN+ A + ++ M G +P++ TY IL +A +L + + G P
Sbjct: 356 FCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPS 415
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNVIDIGH 100
+ +Y V+DG KVG++ +ELL E +G+ P+++T +H I H
Sbjct: 416 LISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFH 475
Query: 101 I-------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +N+++ LC + A+ L M +G P+ Y TLIK
Sbjct: 476 YLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIK 529
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A K+ + M G P+V TY +L EA L + + G + DV
Sbjct: 217 CKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDV 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----------NVIDI 98
++ ++ C GR + M+LL + +G P+VVT LI+ NV+++
Sbjct: 277 ISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEM 336
Query: 99 ----GHIPRTITFNNVIQ-----------------------------------ALCGVGK 119
GH P + +FN +IQ ALC GK
Sbjct: 337 MPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGK 396
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D A+++L + G PS Y+T+I L
Sbjct: 397 VDDAVVILSQLSSKGCSPSLISYNTVIDGL 426
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C A +++ + ++G + +Y +L E E L + + + P+ T
Sbjct: 114 FCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAAT 173
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVI 96
Y AV+ C G+ + M++L+ ++ P+VVT L + +
Sbjct: 174 YDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMR 233
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
G P +T+N +I+ C G++D+A++ L + +G
Sbjct: 234 GKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYG 271
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 23/117 (19%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E L + N G PDV TA++ FCK+GR+ ++ E G
Sbjct: 87 EGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGA----------- 135
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
VID ++N +I A C G+I++AL +L +H + P+ YD ++ L
Sbjct: 136 -VIDAN------SYNVLINAYCKSGEIEEALRVL----DHTSVAPNAATYDAVLCSL 181
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 25/162 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKND------ 45
C ++ EA ++ M G P+V TY L A ++ + ND
Sbjct: 150 CMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEI 209
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
KP+V TY ++DG CKVGR +E +L E +G+ PN ++D G P +
Sbjct: 210 NCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPN--------EMLDQGLQPDMV 261
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TFN +I LC GK+ +A LL +M E G +P Y++LI+
Sbjct: 262 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIE 303
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 28/145 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G P++ T+ +L EA ++L + G+ PD+ TY ++++GFC VG
Sbjct: 251 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD 310
Query: 67 SNEVMELLNEAIERGVTPNVVT----------------LIHLHN-VIDIGHIPRTITFNN 109
N EL +G P+V++ + L+N ++ +G P IT+++
Sbjct: 311 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 370
Query: 110 VIQALCGVGKIDKALLLLFLMYEHG 134
+++ + GK+D A L +M HG
Sbjct: 371 LLKGIFLAGKVDDAKKLFSVMKAHG 395
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A+K+ M +G N TY I EA ++ +K+ K ++ ++
Sbjct: 383 DAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLI 442
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG CK G+ EL + G PNVVT + +I C G
Sbjct: 443 DGLCKAGKLETAWELFEKLSNEGHEPNVVT------------------YTIMIHGFCREG 484
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++DKA +L+ M +G P Y+TL++
Sbjct: 485 QVDKANVLIQKMEANGCTPDIITYNTLMR 513
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ + + + G+ PNV TYTI+ +A ++ ++ +G PD+
Sbjct: 446 CKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDI 505
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY +M GF + + EV++LL+ ++ V+P+ +T
Sbjct: 506 ITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAIT 542
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + FEA K+ + + + + L A+E+ + N+G +P+V
Sbjct: 411 CKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNV 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYT ++ GFC+ G+ ++ L+ + G TP+++T
Sbjct: 471 VTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIIT 507
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 26 NVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
NVT L + ++M P + ++ ++ G K+ ++V L N+ G++ +
Sbjct: 47 NVTATHALHFFHLMMRSTP---TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSD 103
Query: 86 VVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
TL L N ++ G+ P +T+N +I+ LC +I +A L
Sbjct: 104 RCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFL 163
Query: 129 LMYEHGKIPSRTLYDTLIKKL 149
M + G P Y TLIK L
Sbjct: 164 RMQKLGCTPDVVTYGTLIKGL 184
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKND----------GLKPD 50
+C D AR++ M G P+V +Y +L Y + V+ G +P+
Sbjct: 305 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPN 364
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
V TY +++ G G+ ++ +L + G+ N T + L
Sbjct: 365 VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFT 424
Query: 95 VIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + I N +I LC GK++ A L + G P+ Y +I
Sbjct: 425 ELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMI 477
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + + + D + + G P TY L EA E+ + G++P+
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPN 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VIDIGHI-- 101
VYTYT ++DG C VG++ E ++ LN IE+ PN VT + N V D I
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVE 376
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLIKKL 149
P IT+N ++ LC G +D+A LL+LM + P Y+ LI L
Sbjct: 377 LMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ + M +G ++ T+ IL EA L +K GL+ D
Sbjct: 187 FCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEAD 246
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ YT+++ GFC G + L +E +ERG +P +T L
Sbjct: 247 LVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFE 306
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G P T+ +I LCGVGK +AL L LM E + P+ Y+ +I KL
Sbjct: 307 FMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKL 362
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY A V+ M G+ NV + IL +A +L ++ + L P
Sbjct: 116 CYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMP 175
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
DV++Y V+ GFC+ + +EL NE G + ++VT + L
Sbjct: 176 DVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFL 235
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +G + + ++I+ C G++D+ L + E G P Y+TLI+
Sbjct: 236 KEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ + M + P+V ++ I+ A +L+ + GL PD+
Sbjct: 540 CKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDL 599
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+TY+ +++ F K+G +E + ++ ++ G P+
Sbjct: 600 FTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633
Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKP 49
C +A ++++ M P+ TY IL EA ++L + D P
Sbjct: 363 CKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDP 422
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTI--- 105
DV +Y A++ G CK R ++ +++ + +E+ G V T I L++ + G + + +
Sbjct: 423 DVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELW 482
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ +I C G ++ A LL M PS Y+ L+ L
Sbjct: 483 KQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSL 539
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDV 51
C +N +A + D + + G VTT +L +A E+ + + + +
Sbjct: 435 CKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNS 494
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYTA++DGFCK G N LL + + P+V +N ++
Sbjct: 495 DTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSV------------------FDYNCLL 536
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+LC G +D+A L M P ++ +I
Sbjct: 537 SSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMI 571
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A+ + M G N TYT+L + +EM ++ G+ P++
Sbjct: 209 CKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNL 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI 98
YTY VM+ CK GR+ + ++ +E ERGV+ N+VT L + V+D
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328
Query: 99 GHI----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+N +I C VGK+ KAL L + G PS Y+ L+
Sbjct: 329 MKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLV 380
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA KV+D M +PN+ TY L +A + ++K+ GL P +
Sbjct: 314 CREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSL 373
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP----------------NVVTLIHLHNV 95
TY ++ GFC+ G ++ +++ E ERG+ P N+ T I L +
Sbjct: 374 VTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSS 433
Query: 96 I-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++G +P T++ +I C G++++A L M E P+ +Y+T+I
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMI 485
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 36/184 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D A K++ M + G P+ TYTIL A ++ +++ GL PD
Sbjct: 383 FCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPD 442
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V+TY+ ++ GFC G+ NE L +E+ + PN V ++N + +G+
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEV----IYNTMILGYCKEGSSYRAL 498
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +++ +I+ LC K+ +A L+ M + G PS T+ + + +
Sbjct: 499 RLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRAK 558
Query: 150 DQQP 153
P
Sbjct: 559 TDSP 562
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I +++++L+ ++ G P+V YT ++DG CK G + +L E + G+ N T
Sbjct: 179 IEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTV 238
Query: 89 LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LIH + + G P T+N V+ LC G+ A + M E G
Sbjct: 239 LIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERG 298
Query: 135 KIPSRTLYDTLIKKL 149
+ Y+TLI L
Sbjct: 299 VSCNIVTYNTLIGGL 313
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVY++ V+ G C+ G + +LL E E G +PNVV +
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVV------------------IYTT 203
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I C G+I+KA L F M + G + + Y LI L
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGL 243
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L + + + + G+ PD
Sbjct: 146 FCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYT T +++G CK + +E EL NE +++G+ PN VT L
Sbjct: 206 VYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G+ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLI 318
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M GY P++ TY L +A ++++ + GLKPD
Sbjct: 251 HCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G EL IE + + V LI L
Sbjct: 311 KITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ +I C G + A LL M G +P
Sbjct: 371 EMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A ++ M + + YT L +A +ML + + GLKP+
Sbjct: 322 CKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPEN 381
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYT +++GFCK G +LL E G P VVT
Sbjct: 382 GTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D +A ++ + M G +P+ TY ++ +A ++ M + +DGL+PD TYT
Sbjct: 504 DTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYT 563
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDI 98
++ C+ G +E +LLN + G+ P+VVT LIH ++D+
Sbjct: 564 CLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDV 623
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I ALC G+ A M E G P++ Y LI
Sbjct: 624 GIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLI 671
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EARK+++ M +G P+V TYTIL AY + + G++P+
Sbjct: 569 HCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPN 628
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ C+ GR+ +E +ERG+ PN T+ +
Sbjct: 629 EITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPN------------------KYTYTLL 670
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I C G A+ L F M+++G P ++ L K D+
Sbjct: 671 IDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDK 711
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P++ TY + EA +L +++ GL P V TY ++DG+C++G E
Sbjct: 379 GLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEA 438
Query: 71 MELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQA 113
L E +E+G P+V T L N ++ G P +N I A
Sbjct: 439 RRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICA 498
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G KA L +M G P Y+ +I L
Sbjct: 499 ELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGL 534
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + A M D G PN TY +L AY + GL P+
Sbjct: 605 CRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNK 664
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
YTYT ++DG C+ G + + L E + G+ P+ T L D GH+ I +
Sbjct: 665 YTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDKGHMYHAIEY 720
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 29/140 (20%)
Query: 18 MFDNGYHPNVTTYTIL----------EAYEM-LMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G P + TY + EA ++ ++ GL PD+ TY ++++G+CK G
Sbjct: 340 MENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGN 399
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
E + LL + G+ P V +T+N +I C +G +++A L
Sbjct: 400 LKEALWLLGDLRRAGLAPTV------------------LTYNTLIDGYCRLGGLEEARRL 441
Query: 127 LFLMYEHGKIPSRTLYDTLI 146
M E G P Y L+
Sbjct: 442 KEEMVEQGCFPDVCTYTILM 461
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-------VTPNVVTLI-----HLHN 94
++P + TY ++D F K GR +E LL E +G VT NVV HL N
Sbjct: 239 IEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLEN 298
Query: 95 ---VIDIGHIPR---TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++D + + + T+N +I AL G + K L M G +P+ Y+ +I
Sbjct: 299 AAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHG 358
Query: 149 L 149
L
Sbjct: 359 L 359
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D AR+++ M ++G P+V TY+ + + + +L + + G KPD
Sbjct: 238 YCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPD 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT ++ G CK G+ E L+ +E G TPN V T++ V
Sbjct: 298 VVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAV------------------TYSLV 339
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC + K+D A LL + + G+I ++ L+
Sbjct: 340 FDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 18 MFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
M++ H + + EA E++ N+K+ KPDV T+ ++ G CK GR +E ++L+E
Sbjct: 56 MYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEM 115
Query: 78 IERGVTPNVVTLIHLHNVID--------------IGHIPRTITFNNVIQALCGVGKIDKA 123
G N+VT L N + + P T T+N +I C G+ID+A
Sbjct: 116 ERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRA 175
Query: 124 LLLLFLMYEH-GKIPSRTLYDTLIKKL 149
L M + G P Y LI L
Sbjct: 176 YGFLEEMKQRAGCSPDTFTYSILINGL 202
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYTY 54
C EA++V+D M +G+ N+ TY L + E ++ ++ PD TY
Sbjct: 100 CKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTY 159
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVID---------------I 98
A++ GFCK G + L E +R G +P+ T L N + I
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219
Query: 99 GH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + FN ++ C +D+A LL M EHG P Y T+I L
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGL 273
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
A E+L ++ G PDV TY+ ++DG C+ G ++ LL + + RG P+VVT
Sbjct: 246 RARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVT----- 300
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++ LC GK+ +A L+ M E G P+ Y + L
Sbjct: 301 -------------YTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGL 343
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER---GVTPNVVTLIHLHNVIDIGHIPRT-- 104
D YTY ++ C G M+LL E ++ TP++ +H + G +P
Sbjct: 17 DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFF-VHALCKSGKVPEAME 75
Query: 105 --------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+TFN +I LC G++D+A +L M G + Y+TLI L
Sbjct: 76 VVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135
Query: 151 Q 151
Sbjct: 136 S 136
>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA +V + M +G PNV T TIL EA+ L V+ G+ P+
Sbjct: 433 YCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPN 492
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
+ TY +++G CKV + N+V + + I+RG P+ V +
Sbjct: 493 LCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYY 552
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P T+ ++I LC K+ + + L M G P R LY +LI
Sbjct: 553 KMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLI 605
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 79/217 (36%), Gaps = 67/217 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLK--- 48
C + D ++ M NG PN+ +Y+ L A+E+ +K+ G K
Sbjct: 329 CKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDH 388
Query: 49 --------------------------------PDVYTYTAVMDGFCKVGRSNEVMELLNE 76
PD Y Y++++ +C+ + E +E+
Sbjct: 389 IVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFEL 448
Query: 77 AIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
I G+ PNVVT L+H L V G +P T+ +I LC V K
Sbjct: 449 MICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNK 508
Query: 120 IDKALLLLFLMYEHGKIPSRTLY----DTLIKKLDQQ 152
+ + M + G +P LY D +K LD Q
Sbjct: 509 PNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQ 545
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
+C+ +A +V D M G+ P+V +Y+I L Y ML+ + +G+ P+
Sbjct: 293 FCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPN 352
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT-PNVVTLIHLHNVI------------- 96
+ +Y++++ G C+ GR EL ++G ++V I LH
Sbjct: 353 LVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWN 412
Query: 97 DIGH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
D+ H +P ++++I A C ++ +AL + LM G P+
Sbjct: 413 DMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPN 457
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 31/160 (19%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVY 52
N R + D M +G PN+ +Y++L EA E+L ++ +G++P+
Sbjct: 190 NQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAA 249
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
TY + G C+ + L +RG N + FN VI
Sbjct: 250 TYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCN------------------SYCFNAVIH 291
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C G++ KA+ + M + G +P Y L+ L +Q
Sbjct: 292 GFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQ 331
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
Y F+ H + +A E+ +K G PDV++Y+ ++DG CK G +L
Sbjct: 283 SYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLV 342
Query: 76 EAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
E G+TPN+V ++++++ LC G+++ A L + + G
Sbjct: 343 EMARNGITPNLV------------------SYSSLLHGLCRAGRVELAFELFKRLKDQG 383
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + E + +M G P+ YT L A E+ ++ +GL D
Sbjct: 574 CHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADS 633
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT-ITFNN 109
+ YT ++ GF KV + + E + +G+TP VVT L IG + + +N+
Sbjct: 634 FVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNS 693
Query: 110 VIQA 113
++QA
Sbjct: 694 MLQA 697
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D EA ++ M D G PN+ TYT L E + ++ +GL PD YT
Sbjct: 543 DLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYT 602
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDI 98
+++ +CK +E+ E G++ + + + +++
Sbjct: 603 SLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNK 662
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
G P +T+ ++I +G KA+++ M + G P L
Sbjct: 663 GLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPDAKL 705
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKP 49
CYC +++ A ++ M G + YT L + ++ M + N GL P
Sbjct: 607 CYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTP 666
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
V TYT ++ G+ K+G + M + N ++ G+ P+
Sbjct: 667 TVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPDA 703
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E +D M NG PN + I+ EA + ++ GL PD
Sbjct: 311 YATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPD 370
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V ++ A++D CK+GR ++ + N+ I GVTPN+ L
Sbjct: 371 VVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFF 430
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+D G + FN ++ LC G++ +A L+ LM G P+ Y+TL+
Sbjct: 431 EVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLV 483
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ EA+++ID M G PNV +Y L EA ++L + ++GLKP+
Sbjct: 452 CNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNE 511
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
+TYT ++ G+CK R ++ L E + +GVTP V T LH + G
Sbjct: 512 FTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLN 571
Query: 105 ----------ITFNNVIQALCGVGKIDKAL 124
T+N ++ LC +D+A
Sbjct: 572 MINSRTKCDIYTYNIILNGLCKNNFVDEAF 601
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA + + M G P+V ++ L +A + N+G+ P+
Sbjct: 346 YAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPN 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----TLIHLHN------------ 94
++ +++++ G C VG+ + EL E +++G+ + V + +L N
Sbjct: 406 IFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLID 465
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I +G P I++N ++ C G+ID+A LL +M +G P+ Y L++
Sbjct: 466 LMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLR 519
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A+ V M D G P+ TY L E +ML + GL+PD
Sbjct: 207 CKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDC 266
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIH----------LHNVIDI 98
TY ++D CK GR E + +G+ P+V L+H +H+ +D+
Sbjct: 267 ITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDL 326
Query: 99 ---------------------------------------GHIPRTITFNNVIQALCGVGK 119
G P ++F +I ALC +G+
Sbjct: 327 MVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGR 386
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D A+L M G P+ ++ +L+ L
Sbjct: 387 VDDAVLQFNQMINEGVTPNIFVFSSLVYGL 416
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G P+V Y + +AY + + + + G+ P+V TYT V+DG CK
Sbjct: 152 MSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQV 211
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNN 109
+ + + I+RGV P+ T LIH L + G P IT+
Sbjct: 212 VDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYAL 271
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC G+ +A L M+ G P +Y L+
Sbjct: 272 LLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILL 308
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYE-MLMNVKNDGLK 48
C+C + G+ NV + L EA + +L+ + G
Sbjct: 99 CFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCP 158
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------------- 92
PDV Y V++GF + G+ + L E +++G+ PNVVT +
Sbjct: 159 PDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGV 218
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ID G P T+N +I GK + + +L M HG P Y L+ L
Sbjct: 219 FQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYL 276
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 28/162 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G PN+ ++ L +A E+ V + G+ D + +M C GR
Sbjct: 397 MINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGR 456
Query: 67 SNEVMELLNEAIERGVTPNVV---TLIHLH----------NVIDI----GHIPRTITFNN 109
E L++ I GV PNV+ TL+ H ++D+ G P T+
Sbjct: 457 VMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTI 516
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+++ C ++D A L M G P Y+T++ L Q
Sbjct: 517 LLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQ 558
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPD 50
YC +A + M G P V TY TIL EA E+ +N+ N K D
Sbjct: 521 YCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCD 580
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY +++G CK +E ++ + P + ++TFN +
Sbjct: 581 IYTYNIILNGLCKNNFVDEAFKMFRRLCSK--DPQL----------------DSVTFNIM 622
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I AL G+ + A+ L + +G +P Y + + L ++
Sbjct: 623 IGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEE 664
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------- 89
+ P+ TY+ ++ FC++GR ++ G NV+ +
Sbjct: 86 VAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEAT 145
Query: 90 -IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
I L + + G P + +N VI G+++KA L M + G P+ Y T+I
Sbjct: 146 DILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDG 205
Query: 149 L 149
L
Sbjct: 206 L 206
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C K A KV + + DN P + TYTIL EA ++L + + GL+P
Sbjct: 89 FCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEP 148
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------- 101
D +TY + G CK G+ + E + RG P+V+T I L +++ G
Sbjct: 149 DTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWM 208
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I +LC GKI++++ L+ +M E G P YD LI
Sbjct: 209 SEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLI 262
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 34/165 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI--------------LEAYEMLMNVKNDGL 47
+C N A+ V+D M G+ P+V T+ I L+ +E L+ K++
Sbjct: 54 FCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELL--KDNNC 111
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
KP + TYT +++ + G +E ++LL+E + RG+ P+ T T+
Sbjct: 112 KPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPD------------------TFTY 153
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N + + LC GK+D+A + + G P Y+ L++ L Q
Sbjct: 154 NVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQ 198
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 28/174 (16%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ + E K + +F G PNV TY+IL E+ ++ +K GL PD Y
Sbjct: 197 NQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAY 256
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVI 96
Y ++ FC+ G+ + +E L+ I G P++V + + +
Sbjct: 257 CYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKL 316
Query: 97 D-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D +G P ++N ++ AL G +AL ++ M G P Y++LI L
Sbjct: 317 DEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCL 370
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A ++ + + G PNV++Y + A M+ + + G+ PDV
Sbjct: 301 CKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDV 360
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ C+ G +E + LL + + PN+V+ + V+
Sbjct: 361 ITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVS------------------YKTVL 402
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC +ID A+ +L M E+G P+ T Y LI+ +
Sbjct: 403 LGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGI 440
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 26/127 (20%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------- 96
KPDV+ Y AV+ GFCK R +L+ +G +P+VVT HN++
Sbjct: 41 KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVT----HNIMIGTFCGKGKID 96
Query: 97 -----------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
D P IT+ +I+A G ID+AL LL M G P Y+ +
Sbjct: 97 LALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVI 156
Query: 146 IKKLDQQ 152
+ L ++
Sbjct: 157 TRGLCKE 163
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKP 49
C C EA ++ M + PN+ +Y T+L +A E+L + +G +P
Sbjct: 369 CLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQP 428
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE 76
+ TYT +++G G + MEL N
Sbjct: 429 NETTYTLLIEGIGFSGSRTQAMELANS 455
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F A K++D M D G PN+ TY+ + +A +L N+K+ G++PD+
Sbjct: 387 CKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDM 446
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++ G C+ GR + + + + +G +V + +I
Sbjct: 447 YTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVY------------------AYTVMI 488
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
Q C G DKAL LL M ++G IP+ Y+ +I L
Sbjct: 489 QGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSL 526
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ N +A+ + D M G NV YT + EA + ++ + P+
Sbjct: 316 YCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPN 375
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY++++DG CK+GR ++L++E +RG PN+V T++++
Sbjct: 376 VVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIV------------------TYSSI 417
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ ALC +DKA+ LL + + G P Y LIK L Q
Sbjct: 418 LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQS 459
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 29/133 (21%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TY L A ++ +K + + P+VYT+ ++DGFCK G+ N+ +
Sbjct: 234 PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVV 293
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L ++ + P+VV T+N+++ C + K++KA + M
Sbjct: 294 LAIMMKDDIKPDVV------------------TYNSLMDGYCSINKVNKAKDIFDSMASG 335
Query: 134 GKIPSRTLYDTLI 146
G I + +Y T++
Sbjct: 336 GVIANVQIYTTMV 348
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDV 51
C K +A D + G+H + +Y I A ++L V ++P+
Sbjct: 142 CLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNA 201
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
Y ++D CK N+ +L ++ + + + P+V T I L N
Sbjct: 202 VMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNK 261
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I P TFN ++ C GK++ A ++L +M + P Y++L+
Sbjct: 262 MKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLM 313
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN+ +A +++ M G +P+ TY +L A+ +L ++ DGL D
Sbjct: 191 FCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIAD 250
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY A+++ CK GR+++ L + RG+ PN V TFN++
Sbjct: 251 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAV------------------TFNSL 292
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC GK D A L M G P Y + I+ L
Sbjct: 293 INGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHL 331
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 30/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C + EA +++ MF+ G P V T T ++ AY +L +K G KP+V
Sbjct: 122 CRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 181
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--LIHLHNVIDIGHIPRTI---- 105
+TY A++ GFC G+ ++ M LLN+ GV P+ VT L+ ID GHI
Sbjct: 182 WTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCID-GHIESAFRLLR 240
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I ALC G+ D+A L + G P+ +++LI L
Sbjct: 241 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 296
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E ML +K G +P Y AV+D C+ ++ E E+L E E+G+ P VVT +
Sbjct: 94 EGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVI 153
Query: 94 N-------------VIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N V+++ G P T+N ++Q C GK+ KA+ LL M G
Sbjct: 154 NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN 213
Query: 137 PSRTLYDTLIK 147
P Y+ LI+
Sbjct: 214 PDAVTYNLLIR 224
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C +A + D + G PN T+ L A++ L + + G PD
Sbjct: 262 CKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDT 321
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVI---DIGHIPRT--- 104
YTY++ ++ CK+ S E + + E +++ V P+ V I +H ++ + G + RT
Sbjct: 322 YTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGE 381
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+ ++A C G++++A +L M ++G Y+TL+
Sbjct: 382 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 433
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +PD YT+ +++ G+C+ + + +L ++ RG +VV
Sbjct: 5 GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVV------------------ 46
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +I+ LC G+ID+A+ L M + P +Y L+K L
Sbjct: 47 SYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGL 86
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 45/174 (25%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G +P+V TYT + EA +LM + +G+ D Y +MDG +G+
Sbjct: 382 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 441
Query: 67 SNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI--------------------- 98
++ + +L + PN T L+ + V D+
Sbjct: 442 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLF 501
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P + T++++++ G+ ++A L+ LM E + +Y L+
Sbjct: 502 DVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALV 555
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + +A ++ M +G+ P + +Y L +A E+ MN + P
Sbjct: 557 CFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSP 616
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELL 74
D + ++DG K G S+ E++
Sbjct: 617 DEIVWKVIIDGLIKKGHSDISREMI 641
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTL------ 89
+K + P+ TY+++++GF + GR+ E L++ E ++ N +VT
Sbjct: 504 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKR 563
Query: 90 -----IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL----FLMYEHGKIPSRT 140
+ + ++I G IP+ +++ +++ L G+ DKA + + Y +I +
Sbjct: 564 YLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKV 623
Query: 141 LYDTLIKK 148
+ D LIKK
Sbjct: 624 IIDGLIKK 631
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+ D M N + PN TY+ + EA ++ +K D + + YTA++ FC
Sbjct: 500 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 559
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
K R + L+ I+ G P +++ HL
Sbjct: 560 KSKRYLDAWVLVCSMIQHGFIPQLMSYQHL 589
>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 28/154 (18%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
+PN+ TYTIL EA ++ ++ +G KPD + Y +M G+C + R +E +E
Sbjct: 234 YPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIE 293
Query: 73 LLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALC 115
+ N E+GV P+++ TLI L + + GH P +T+ +++ +C
Sbjct: 294 VYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMC 353
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ AL LL M G P+ Y+TL+ L
Sbjct: 354 RKGETLAALALLEEMEMKGCSPNTCTYNTLLHGL 387
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMN----------VKNDGLKPDV 51
CN + EA +++D + + G+ P+ Y TI++ Y ML +K G++PD+
Sbjct: 248 CNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDL 307
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY ++ G K GR +E +LL E+G P+ VT L N +
Sbjct: 308 ITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEE 367
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T T+N ++ LC DKA+ L M G Y T ++ L
Sbjct: 368 MEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRAL 422
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + A +++ M G PN TY L +A E+ +K+DGLK D+
Sbjct: 353 CRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDM 412
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE 79
+Y + C VGR + E+ + A+E
Sbjct: 413 ASYATFVRALCSVGRVADAYEVFDYAVE 440
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 28 TTYTILEAYEMLMNVK-NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
+ Y+ L +N+ +DG+ PD T + C R ++ +EL+ E + +P++
Sbjct: 155 SKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDI 214
Query: 87 VTLIHL-HNVIDIGHI----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+ L N+ + P +T+ +I +C + +A L+ ++ E G P L
Sbjct: 215 YSYNFLVKNLCKSRTLSLVYPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFL 274
Query: 142 YDTLIK 147
Y+T++K
Sbjct: 275 YNTIMK 280
>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Brachypodium distachyon]
Length = 721
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C EA++++ M HP+V TY+ I +A +M+ ++ +G KP+
Sbjct: 347 FCLNGRMAEAKEIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPN 406
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+ T+TA+++G CKVG+S+E ELLN++ E TP+ +T ++H +
Sbjct: 407 IVTHTALLNGLCKVGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVA 466
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
++ G P T+ N +I ALC GK +A
Sbjct: 467 QMLQKGFFPTTVEINLLIHALCKEGKPAEA 496
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 63/210 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +ARK++ +M+ NG PN+ T+T L EA+E+L D P
Sbjct: 382 FCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGLCKVGKSSEAWELLNKSGEDWWTPS 441
Query: 51 VYTYTAVMDGF-----------------------------------CKVGRSNEVMELLN 75
TY+ VM GF CK G+ E E +
Sbjct: 442 DITYSVVMHGFRREGKLKESCDVVAQMLQKGFFPTTVEINLLIHALCKEGKPAEAKEFME 501
Query: 76 EAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVG 118
+ +G T NVV T+IH L ++ P +T+ V+ AL G
Sbjct: 502 QCQSKGCTINVVNFTTVIHGFSRQGDLESALSLLDDLYLSNRHPDVVTYTVVVNALGRKG 561
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +A L+ M G +P+ Y T+I +
Sbjct: 562 RLKEATGLVEKMLNRGLVPTLVTYRTVIHR 591
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA E++ + + PDV TY+AV+DGFC++G ++ +++ + G PN+VT L
Sbjct: 355 EAKEIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALL 414
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N LC VGK +A LL E PS Y ++
Sbjct: 415 N------------------GLCKVGKSSEAWELLNKSGEDWWTPSDITYSVVM 449
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E R ++ M D G + TY +L EA E L + + D
Sbjct: 277 CKEKRVSEVRSLLATMRNDAGLLTDQVTYNMLIHVLAKHGHADEALEFLRESEGKRFRVD 336
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+AV+ FC GR E E++ E I + P+VV T++ V
Sbjct: 337 EVGYSAVVHSFCLNGRMAEAKEIVGEMISKECHPDVV------------------TYSAV 378
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C +G+ID+A ++ MY++G P+ + L+ L
Sbjct: 379 VDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGL 417
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 31/115 (26%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
HP+V TYT++ EA ++ + N GL P + TY V+ +C+ G E+++
Sbjct: 544 HPDVVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVPTLVTYRTVIHRYCEKGTVEELVD 603
Query: 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
LL++ + R +V +N VI+ LC GK+++A LL
Sbjct: 604 LLDKMLARQELKSV--------------------YNQVIEKLCAFGKLNEAYGLL 638
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G++PDV TY ++ G C V R E +E++ ++ G P+ ++ + + +
Sbjct: 226 GVEPDVVTYNCLIKGLCSVRRVVEALEMIGVMLKNGCPPDKISYYTVMSFLCKEKRVSEV 285
Query: 97 ---------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
D G + +T+N +I L G D+A L FL GK
Sbjct: 286 RSLLATMRNDAGLLTDQVTYNMLIHVLAKHGHADEA--LEFLRESEGK 331
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYH--PNVTTYTILE---------AYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+V+ M G P + +L A +L ++ DG PD+ ++
Sbjct: 145 ARRVVRLMIRRGVRRGPRQFAHLMLSYSRAGKLRSAMRVLQLMQTDGCAPDISICNVAVN 204
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GR ++ + + GV P+VVT +N +I+ LC V +
Sbjct: 205 VLVVAGRVDKALGFADRMRRVGVEPDVVT------------------YNCLIKGLCSVRR 246
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +AL ++ +M ++G P + Y T++ L
Sbjct: 247 VVEALEMIGVMLKNGCPPDKISYYTVMSFL 276
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH-PNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C K D A ++ M + + PNV Y+ + +A + ++ G+ PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
++TY +++ GFC GR ++ +LL E +ER ++P+VVT L N
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYD 349
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G IP TIT+N++I C ++D A + +LM G P + TLI
Sbjct: 350 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 402
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + FFEA ++ D M G PN TY + A +M + G PD
Sbjct: 335 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 394
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI-- 98
V+T+T ++DG+C R ++ MELL+E RG+ N V TLIH L+ +D+
Sbjct: 395 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 454
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
G P +T N ++ LC GK+ AL + M
Sbjct: 455 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAM 491
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 34/175 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + M + G P++ TY + +A ++L + + PDV
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-------------- 97
TY A+++ F K G+ E EL +E + RG+ PN +T +++ID
Sbjct: 326 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITY---NSMIDGFCKQDRLDAAEDM 382
Query: 98 ------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P TF +I CG +ID + LL M G + + Y+TLI
Sbjct: 383 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 437
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 505 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + +PNVV TFN +I C G++D L L
Sbjct: 565 ATQMFVSMGSKSFSPNVV------------------TFNTLINGYCKAGRVDDGLELFCE 606
Query: 130 MYEHGKIPSRTLYDTLI 146
M G + +Y TLI
Sbjct: 607 MGRRGIVADAIIYITLI 623
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C+ + A + G HP+V T+T L EA + + +P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+V T+T +M+G C+ GR E + LL+ +E G+ P +T L L
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242
Query: 93 HNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ H IP + ++ +I +LC G+ A L M E G P Y+++I
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + +A +++ M + P+V TY L EA E+ + G+ P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TY +++DGFCK R + ++ +G +P+V T LH
Sbjct: 360 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 419
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + T+T+N +I C VG ++ AL L M G P +TL+ L
Sbjct: 420 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 475
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 41/185 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +++ M G N TY L A ++ + + G+ PD
Sbjct: 405 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 464
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER------------GVTPNVVT-------LIH 91
+ T ++DG C G+ + +E+ +A+++ GV P+V+T LI+
Sbjct: 465 IVTCNTLLDGLCDNGKLKDALEMF-KAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 523
Query: 92 LHNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
++ G +P TIT++++I LC ++D+A + M P+
Sbjct: 524 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 583
Query: 142 YDTLI 146
++TLI
Sbjct: 584 FNTLI 588
>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 578
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N EARK+ M + G P+ TYTIL EA + + GL PD
Sbjct: 293 YCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPD 352
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID 97
V++Y ++ G+CK R E M LL + + + PN++T ++ ++D
Sbjct: 353 VWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVD 412
Query: 98 IGHI-----PRTITFNNVIQALCGVGKIDKALLLL-FLMYEHGKIPSRTLYDTLIK 147
H P T+N ++++LC + ++KA+ L++E P+ Y+ LI
Sbjct: 413 EMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILIS 468
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 37/181 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N EAR++ + M + G ++ Y IL EA ++ + G +PD
Sbjct: 258 FCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPD 317
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
TYT +M G+C + + +E L + IERG+ P+V + +N++ G+
Sbjct: 318 TITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWS----YNILIKGYCKFERVGEAM 373
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKK 148
+P IT+N+V+ LC G I A L+ M Y P T Y+ L++
Sbjct: 374 NLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLES 433
Query: 149 L 149
L
Sbjct: 434 L 434
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
C + EAR + M G P++ TY+ ++ + G + +V T++++GFC
Sbjct: 208 CKDGNINEARVLCSKMIVQGIFPDIFTYS-----SLIYGLCRAGQRKEV---TSLLNGFC 259
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTI 105
+ +E EL N IERG +++ L H +++ G P TI
Sbjct: 260 LNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTI 319
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
T+ ++ C + K+D+A L M E G +P Y+ LIK
Sbjct: 320 TYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIK 361
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 31/162 (19%)
Query: 3 CNKNDFFEARKVIDYM-FDNGYHPNVTTYTIL-------EAYEMLMN-----VKNDGLKP 49
C +A K++D M + P+VTTY IL E E + + P
Sbjct: 399 CKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAP 458
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V++Y ++ G CK R +E + L N + + P++VT +N
Sbjct: 459 NVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVT------------------YNI 500
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ AL ++DKA+ LL + + G P+ Y+ LI L +
Sbjct: 501 LLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHK 542
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 30/162 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C+C+ A V+ + G PNV T+T +L+A + + ++
Sbjct: 98 CFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRF 157
Query: 50 DVYTYTAVMDGFC--KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
D Y +++G C K+G+ ++LL + ER + P I +
Sbjct: 158 DDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVK-----------------PNLIMY 200
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N V+ LC G I++A +L M G P Y +LI L
Sbjct: 201 NTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGL 242
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
+F+ + PNV +Y IL EA + ++ L PD+ TY ++D +
Sbjct: 451 IFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQ 510
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
++ + LL + +++G++PN+ T L N + G P+T
Sbjct: 511 LDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKT 548
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 35 AYEMLMNVKNDGL-KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
A ++L ++ L KP++ Y V+ G CK G NE L ++ I +G+ P++ T L
Sbjct: 180 AVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSL- 238
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ + + +++ C K+D+A L +M E G+
Sbjct: 239 -IYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGE 279
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + ++M P++ TY IL +A +L+ + + G+ P++
Sbjct: 471 CKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNL 530
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
TY +++G K GR ++ RG P+V T I
Sbjct: 531 RTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTYI 569
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 29/147 (19%)
Query: 23 YHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
Y + YT++E G+ P T+ +++ FC +G+ + ++ + ++ G
Sbjct: 70 YATAIDLYTLMEY---------KGVVPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGC 120
Query: 83 TPNVVTLIHL-------HNVIDIGHI-----PRTITFNNV-----IQALC--GVGKIDKA 123
PNVVT L ++D +I R I F++V I LC +GK A
Sbjct: 121 RPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAA 180
Query: 124 LLLLFLMYEHGKI-PSRTLYDTLIKKL 149
+ LL M E + P+ +Y+T++ L
Sbjct: 181 VQLLQKMEERQLVKPNLIMYNTVVHGL 207
>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 737
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 30/161 (18%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C E R +++ M DN P+ TY L EA E L + G + D
Sbjct: 287 CQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVD 346
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+A+++ FC GR + E++NE I +G +P+VV T+ V
Sbjct: 347 KVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVV------------------TYTAV 388
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ LC VGK+++A +L MY+HG P+ Y L+ L Q
Sbjct: 389 VNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQ 429
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A+++++ M G P+V TYT + EA +ML + G KP+
Sbjct: 357 FCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPN 416
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-- 98
+YTA+++G C+ G S E E++N + E TPN +T ++H L D+
Sbjct: 417 TVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVR 476
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKA 123
G P + N +I++LC K+++A
Sbjct: 477 EMLTKGFFPTPVEINLLIKSLCLEQKMNEA 506
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 22 GYHPNVTTYTIL----EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
GY V ++ + A E++ + G PDV TYTAV++G CKVG+ E ++L +
Sbjct: 349 GYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQM 408
Query: 78 IERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQALCGVGKI 120
+ G PN V+ L N + + P IT++ V+ L GK+
Sbjct: 409 YKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKL 468
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A ++ M G P+ + LIK L
Sbjct: 469 SEACDVVREMLTKGFFPTPVEINLLIKSL 497
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 63/207 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+K++ M+ +G PN +YT L EA EM+ + D P+
Sbjct: 393 CKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNA 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP--------------------------- 84
TY+ VM G + G+ +E +++ E + +G P
Sbjct: 453 ITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEE 512
Query: 85 -----------NVVTLIH----------LHNVIDIGHI----PRTITFNNVIQALCGVGK 119
N T+IH +++D ++ P +TF +I AL G+
Sbjct: 513 CLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGR 572
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
I++A + M + G P+ Y +I
Sbjct: 573 IEEATVYTMKMLKKGLDPTPVTYRAVI 599
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 31/133 (23%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C ++ A ++D M+ N HP+ T+T I EA M + GL P
Sbjct: 532 FCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPT 591
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY AV+ +CK+GR E+++LL + + R RT +N V
Sbjct: 592 PVTYRAVIHQYCKMGRVEELIKLLGKMLSRSKC-------------------RT-AYNQV 631
Query: 111 IQALCGVGKIDKA 123
I+ LC G + A
Sbjct: 632 IEKLCNFGNPEAA 644
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 30/168 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA V+ M G+ P +L EA + + N G + +T V+
Sbjct: 470 EACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVI 529
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHI 101
GFC+ + + LL++ P+ VT ++ ++ G
Sbjct: 530 HGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLD 589
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ VI C +G++++ + LL M K RT Y+ +I+KL
Sbjct: 590 PTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSK--CRTAYNQVIEKL 635
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 29/180 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-----------VTTYTILEAYEMLMNVKNDGLKPD 50
Y A +V+ M G PN V + +A L ++ G+ P+
Sbjct: 181 YSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPN 240
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVI- 96
V TY ++ G+C + + MEL+ E +G P+ V+ + + N++
Sbjct: 241 VVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLME 300
Query: 97 ----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D P +T+N ++ L G D+AL L E G + Y ++ Q
Sbjct: 301 KMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQ 360
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D AR V D + G P V ++ L E + + ++++G+ PD
Sbjct: 258 FCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPD 317
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V+T++A+++G CK GR +E L +E RG+ PN VT L +
Sbjct: 318 VFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQ 377
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P +T+N +I LC VG + +A L+ M G P + + TLI
Sbjct: 378 MMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLI 430
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D EAR++++ M +G P+ T+T L A E+ + +G++ D
Sbjct: 399 CKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDD 458
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
+TA++ G C+ GR ++ +L + + G P+ T L
Sbjct: 459 VAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKE 518
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ GH+P +T+N ++ LC G++ A +LL M G P+ Y+ L+
Sbjct: 519 MQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILL 570
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 28/170 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K M G P++ TY L EA ++ + GLKPD T+T ++D
Sbjct: 372 ALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLID 431
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IH-----LHNVIDIGHIP 102
G CK G +E+ +E G+ + V +H L +++ G P
Sbjct: 432 GCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKP 491
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ VI C G + LL M G +P Y+ L+ L +Q
Sbjct: 492 DDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 541
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---T 88
I ++ + + V + G P +Y + +M GFCK G + +E +RG+ P VV T
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288
Query: 89 LI-------------HLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LI L V++ G P TF+ +I LC G++D+ LL M G
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348
Query: 135 KIPSRTLYDTLI 146
+P+ + TLI
Sbjct: 349 LVPNGVTFTTLI 360
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A +++ M G+ P+ TYT++ +++L +++DG P V
Sbjct: 469 CREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGV 528
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
TY A+M+G CK G+ LL+ + GV PN +T +N++ GH
Sbjct: 529 VTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDIT----YNILLDGH 573
>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D A ++ M +G+ P + YT+L EA L + +G P
Sbjct: 496 CLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLP 555
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------LHNVI 96
D+ Y+A +DGF K+ ++ +E+ + RG P+VV TLI+ H+++
Sbjct: 556 DIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDIL 615
Query: 97 D----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G +P +T+N +I C G ID+A L M + P+ Y TLI L
Sbjct: 616 DEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGL 672
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + EA + M G+ P++ Y+ + +A E+ ++ G PDV
Sbjct: 533 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDV 592
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y +++GFCKV R +E ++L+E + +G+ P+VVT LI L
Sbjct: 593 VAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSR 652
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ P IT+ +I LC G+ D A+ L M G P+R + LI L
Sbjct: 653 MVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGL 707
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 30/156 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++D M G P+V TY +L +A+ L + +P+
Sbjct: 602 FCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPN 661
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT ++DG C GR ++ + L NE +G +PN ++ I L
Sbjct: 662 VITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIAL------------------ 703
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G D ALL M E + P +Y LI
Sbjct: 704 IHGLCKCGWPDAALLYFREMGER-ETPDTIVYVALI 738
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVY 52
N N E ++ M +G+ P T+ + A +M+ ++ G +P +
Sbjct: 464 NSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIK 523
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNV 95
YT ++ CK RS E L E + G P++V L ++
Sbjct: 524 HYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDI 583
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+ P + +N +I C V ++ +A +L M G +PS Y+ LI
Sbjct: 584 CARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 634
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++I+ M D G N T+ +L +A ++ ++ G PDV Y A++
Sbjct: 246 KAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALI 305
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVI-----DIGHIPR 103
G C + + LL+E E G+ P++ L + ++ +I D+
Sbjct: 306 GGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTEAM 365
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLM 130
+ +N+V+ L +DKA LL M
Sbjct: 366 LLLYNSVLNGLVNGKSVDKAYYLLXAM 392
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTLIHL---------- 92
+ G +PD YT T+V+ +C + ++ + + NE RG V +V++++ L
Sbjct: 187 DSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGEVDK 246
Query: 93 -----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ D+G TF +I ++DKAL L M + G P ++YD LI
Sbjct: 247 AFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIG 306
Query: 148 KL 149
L
Sbjct: 307 GL 308
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN------VTTYT----ILEAYEMLMNVKNDGLKPDV 51
YCN F +A V + ++ G+ V T++ + +A+E++ +++ G++ +
Sbjct: 204 YCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNE 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+ ++ GF + R ++ ++L + + G P+V ++ +I
Sbjct: 264 KTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSV------------------YDALI 305
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC +I+KAL LL M E G P + LI
Sbjct: 306 GGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 340
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 23/123 (18%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID--------- 97
++P +++ V+DG C G+ + + L + + G NV+ +N+ID
Sbjct: 413 VRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLL---YNNLIDKLSNSNRLE 469
Query: 98 -----------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P T N++ LC + AL ++ M HG P Y L+
Sbjct: 470 ECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLV 529
Query: 147 KKL 149
K+L
Sbjct: 530 KQL 532
>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
Length = 438
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C +A +V++ M NG P+ TY +IL EA L +++DG++P+V
Sbjct: 250 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNV 309
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++M+ CK GR E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 310 VTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDL 369
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN +I A K+D+A+L+ M +HG P+ Y T+I L
Sbjct: 370 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 424
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE M+ + + G PDV +YT V++GF K G S++ +E ++R ++PNVV
Sbjct: 186 LELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVV----- 240
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I ALC +DKA+ +L M ++G +P Y++++
Sbjct: 241 -------------TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 281
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 34/168 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D PNV TY+ + +A E+L + +G+ PD TY +++ G+C G+
Sbjct: 230 MLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 289
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNN 109
E + L + GV PNVVT L N + G P T+
Sbjct: 290 PKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRT 349
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI------KKLDQ 151
++Q G + + LL LM +G P +++ LI +K+DQ
Sbjct: 350 LLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQ 397
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 29/134 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYE----------MLMNVKNDGLKPDV 51
C EARK+ D M G P++ TY T+L+ Y +L + +G++PD
Sbjct: 320 CKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDH 379
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ + ++ + K + ++ M + ++ + G+ PNVV + VI
Sbjct: 380 HVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVV------------------CYGTVI 421
Query: 112 QALCGVGKIDKALL 125
LC G +D A+L
Sbjct: 422 DVLCKSGSVDDAML 435
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 28/164 (17%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+++ M G PN+ TYTI EAY ++ + +DG PDV TYT ++D C
Sbjct: 251 LLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALC 310
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNVIDI-------GHIPRTI 105
+ ++ M L + P+ VT + HL V I G+ P +
Sbjct: 311 TARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVV 370
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF ++ ALC G+I++A LL M + G +P+ Y+TLI L
Sbjct: 371 TFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGL 414
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++D M G PN+ TY L +A ++ N+++ G++P
Sbjct: 380 CKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTA 439
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YTY ++D K G + +E + RG+ PN+V L+++ ++G +
Sbjct: 440 YTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNE 499
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++T+N +++ VG++D+A+ LL M + P + ++LI L
Sbjct: 500 LKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTL 554
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------ 88
A+ + +K+ G PD +TY +++D K G+ NE+ +L +E + RG PN +T
Sbjct: 809 AWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVIS 868
Query: 89 -----------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ +N++ P TF +I L G++D A + M +G P
Sbjct: 869 NLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRP 928
Query: 138 SRTLYDTLI 146
+ +Y+ L+
Sbjct: 929 NSAIYNILV 937
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNV-----TTYTILE------AYEMLMNVKNDGLKPDVYTYTAVM 58
+A + + M G PN+ + Y++ E A M +K+ GL PD TY +M
Sbjct: 457 KALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMM 516
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHI 101
+ KVG+ +E ++LL+E + P+V+ + L + + ++
Sbjct: 517 KCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLA 576
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N ++ L G+I KA+ L M HG P+ ++TL+
Sbjct: 577 PTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLL 621
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C +A + M + + P+ TY T+L+ + ++ ++ DG PDV
Sbjct: 310 CTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDV 369
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+T +++ CK GR NE +LL+ ++GV PN LH T+N +I
Sbjct: 370 VTFTILVNALCKAGRINEAFDLLDTMRKQGVLPN------LH------------TYNTLI 411
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L ++D AL L M G P+ Y LI
Sbjct: 412 SGLLRANRLDDALDLFSNMESLGVEPTAYTYILLI 446
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 28/169 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ M + G+ N +Y L EA E+ + ++GLKP + T++A+M
Sbjct: 177 QAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALM 236
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHI 101
K VM LL E G+ PN+ T V+ D G
Sbjct: 237 VASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCG 296
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
P +T+ +I ALC K+D A+ L M P + Y TL+ K
Sbjct: 297 PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFS 345
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+ + + + +G P+ TY ++ EA ++L + +PDV +++
Sbjct: 492 EAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLI 551
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI---------------- 101
D K GR E ++ E + P VVT I L + G I
Sbjct: 552 DTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCS 611
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P TITFN ++ LC ++D AL + + M P ++T+I +Q
Sbjct: 612 PNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQ 662
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ D M G PN Y IL A E + +G++PD+ +YT ++
Sbjct: 913 DAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILV 972
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDIGHI 101
D C GR ++ + + + G+ P++V L H + + G +
Sbjct: 973 DILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIV 1032
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T+N++I L VG I++A + + G P+ Y+ LI+
Sbjct: 1033 PDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIR 1078
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 31/175 (17%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
N+ F+ + D M G PN TY ++ +A ++ N+ + P T+
Sbjct: 842 NELFD---LYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTF 898
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPN-VVTLIHLHNVIDIGHI------------ 101
++DG K GR ++ E+ + + G PN + I ++ +GH+
Sbjct: 899 GPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVK 958
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P ++ ++ LC G++D AL + + G P Y+ +I L +
Sbjct: 959 EGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRS 1013
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M + G P++ TY L EA ++ ++ GLKP+V+TY A++
Sbjct: 1018 EALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALI 1077
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
G+ G S + + + G PN T L N
Sbjct: 1078 RGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQLPN 1113
>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
Length = 854
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D A ++ M +G+ P + YT+L EA L + +G P
Sbjct: 536 CLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLP 595
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------LHNVI 96
D+ Y+A +DGF K+ ++ +E+ + RG P+VV TLI+ H+++
Sbjct: 596 DIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDIL 655
Query: 97 D----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G +P +T+N +I C G ID+A L M + P+ Y TLI L
Sbjct: 656 DEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGL 712
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + EA + M G+ P++ Y+ + +A E+ ++ G PDV
Sbjct: 573 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDV 632
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y +++GFCKV R +E ++L+E + +G+ P+VVT LI L
Sbjct: 633 VAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSR 692
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ P IT+ +I LC G+ D A+ L M G P+R + LI L
Sbjct: 693 MVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGL 747
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 30/156 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++D M G P+V TY +L +A+ L + +P+
Sbjct: 642 FCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPN 701
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT ++DG C GR ++ + L NE +G +PN ++ I L
Sbjct: 702 VITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIAL------------------ 743
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G D ALL M E + P +Y LI
Sbjct: 744 IHGLCKCGWPDAALLYFREMGER-ETPDTIVYVALI 778
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVY 52
N N E ++ M +G+ P T+ + A +M+ ++ G +P +
Sbjct: 504 NSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIK 563
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNV 95
YT ++ CK RS E L E + G P++V L ++
Sbjct: 564 HYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDI 623
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+ P + +N +I C V ++ +A +L M G +PS Y+ LI
Sbjct: 624 CARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 674
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTI-----LEAYEM-LMNVKNDGLKPDVYTYTAVMD 59
N F+ K++ N Y N I ++ EM L + + G +PD YT T+V+
Sbjct: 183 NLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQ 242
Query: 60 GFCKVGRSNEVMELLNEAIERG-VTPNVVTLIHL---------------HNVIDIGHIPR 103
+C + ++ + + NE RG V +V++++ L + D+G
Sbjct: 243 AYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLN 302
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +I ++DKAL L M + G P ++YD LI L
Sbjct: 303 EKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGL 348
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++I+ M D G N T+ +L +A ++ ++ G PDV Y A++
Sbjct: 286 KAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALI 345
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVI-----DIGHIPR 103
G C + + LL+E E G+ P++ L + ++ +I D+
Sbjct: 346 GGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAM 405
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLM 130
+ +N+V+ L +DKA LL M
Sbjct: 406 LLLYNSVLNGLVNGKSVDKAYYLLRAM 432
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN------VTTYT----ILEAYEMLMNVKNDGLKPDV 51
YCN F +A V + ++ G+ V T++ + +A+E++ +++ G++ +
Sbjct: 244 YCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNE 303
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+ ++ GF + R ++ ++L + + G P+V ++ +I
Sbjct: 304 KTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSV------------------YDALI 345
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC +I+KAL LL M E G P + LI
Sbjct: 346 GGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 380
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 23/123 (18%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID--------- 97
++PD +++ V+DG C G+ + + L + + G NV+ +N+ID
Sbjct: 453 VRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLY---NNLIDKLSNSNRLE 509
Query: 98 -----------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P T N++ LC + AL ++ M HG P Y L+
Sbjct: 510 ECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLV 569
Query: 147 KKL 149
K+L
Sbjct: 570 KQL 572
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY------------EMLMNVKNDGLKPD 50
C K + +A ++ M + G P++ + L AY E L ++ + +
Sbjct: 349 CAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAM--- 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN--VVTLIHLHNVIDIGHIPRTITFN 108
+ Y +V++G ++ LL T N V + ++ P T +F+
Sbjct: 406 LLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVR----PDTTSFS 461
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
VI LC GK+D AL L M G + LY+ LI KL
Sbjct: 462 IVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKL 502
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ D M +G+ P + TY L EA +L ++ GL PDV +Y+ ++
Sbjct: 396 EAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTII 455
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
GFC+ + ++ E +E+GV+P+ +T L +++ +
Sbjct: 456 AGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLL 515
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+ ++I C G +++AL L M + G +P Y+ LI L++Q
Sbjct: 516 PDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQ 566
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +F +A + M NG P+V TYT L A E + GL+P+
Sbjct: 318 YCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPN 377
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNVI----------- 96
TYT++++GF + G +E + +E I G P +VT L++ H V
Sbjct: 378 GVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLR 437
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P ++++ +I C ++D+A + M E G P Y +LI+ L +Q
Sbjct: 438 GMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQ 496
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + + + M N PNV TY I EA+++L ++ +GL+P+
Sbjct: 213 FCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPN 272
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ TY V++G C+VGR E +L E +G P+ VT L+
Sbjct: 273 LLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHS 332
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G P +T+ ++I +C G +++A+ M+ G P+ Y +LI Q+
Sbjct: 333 EMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQK 391
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A ++ M + G P+ TY+ L EA ++ + N L PD
Sbjct: 458 FCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPD 517
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYT++++G+CK G NE + L +E I++G +P T+T+N +
Sbjct: 518 EFTYTSLINGYCKEGDLNEALNLHDEMIKKGF------------------LPDTVTYNVL 559
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
I L + +A LL ++ IP+ YDTLI+
Sbjct: 560 INGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIES 597
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 43/189 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + D EA + D M G+ P+ TY +L EA +L+ + D P+
Sbjct: 528 YCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPN 587
Query: 51 VYTY---------------TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHL 92
TY A++ GFC G NE ++ I+R PN +IH
Sbjct: 588 GITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHG 647
Query: 93 H--------------NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
H ++D G IP T+T +++AL G ++ L++ + K+
Sbjct: 648 HCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRSCKLSD 707
Query: 139 RTLYDTLIK 147
L L++
Sbjct: 708 AELSKALVQ 716
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFE-ARKVIDYMFDNGYHPNVTTYT------------ILEAYEMLMNVKNDGLKP 49
C+ +F E A ++D NG+ P V +Y ++ A ++ + G+
Sbjct: 142 CSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSL 201
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI- 98
+V++Y ++ GFC G + E PNVVT L + +
Sbjct: 202 NVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLL 261
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N VI LC VG+I++ +L M G P Y+TL+
Sbjct: 262 RSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLV 315
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR + D M P+V T++ L +A +L + PD
Sbjct: 367 FCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPD 426
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
VYTYT+++DGFCKVGR E +L +RG PNVVT L
Sbjct: 427 VYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLE 486
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ G P IT+ ++I CG G +++A +L
Sbjct: 487 EMVGNGVQPNVITYRSLIGGFCGTGDLEEARKML 520
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A KV + + P+V Y+ L EA ++ ++ + +PDV
Sbjct: 158 CKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDV 217
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
T+TA+MDG CK R E ++L +R TPNV+T L
Sbjct: 218 VTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKR 277
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+N++I C +D ALLL+ M G +P Y+TLI L
Sbjct: 278 MIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 332
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EA M G PN TY +L AY +L +K GL P+V
Sbjct: 18 CKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNV 77
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ V+ GFC+ + + +L + +E G PN+V T+N ++
Sbjct: 78 VTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV------------------TYNTLL 119
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G +D+A LL M E G P + YDTL+ L
Sbjct: 120 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 157
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A K+ M +NG PN+ TY L EAYE+L ++ GL+PD
Sbjct: 87 FCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPD 146
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++Y +M G CK G+ + +++ + P+VV ++ +
Sbjct: 147 KFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV------------------AYSTL 188
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G++D+A L M E+ P + L+ L
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGL 227
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 63/208 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K+ + M +N P+V T+T L EA ++L +++ P+V
Sbjct: 193 CKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 252
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVID-------- 97
TY++++DG CK G+ + E+ I RG+ PNVVT LIH + N +D
Sbjct: 253 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEE 312
Query: 98 ---IGHIPRTITFNNV-----------------------------------IQALCGVGK 119
G +P IT+N + I C + +
Sbjct: 313 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 372
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
ID A L M + +P + TL++
Sbjct: 373 IDMARTLFDDMLKQAVLPDVVTFSTLVE 400
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 31/164 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLKP 49
+C A K+++ M NG PNV TY L EA +ML ++ D K
Sbjct: 472 FCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKA 531
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++ Y +MDG C+ GR + +ELL EAI++ TP PR +
Sbjct: 532 DMFAYRVMMDGLCRTGRMSAALELL-EAIKQSGTP-----------------PRHDIYVA 573
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKLDQQ 152
+I+ LC ++ KA+ +L M K P+ Y+ +I++L ++
Sbjct: 574 LIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELARE 617
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N A +++ M G P++ TY L EA + ++K PD
Sbjct: 297 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPD 356
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
V TY+ ++ GFCK+ R + L ++ +++ V P+VVT L
Sbjct: 357 VITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLE 416
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P T+ +++ C VG++ +A +L M + G P+ Y LI
Sbjct: 417 EMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 469
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH------------- 91
+ +V T+T ++DG CK R E + ++G PN T LI+
Sbjct: 4 EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 63
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L + + G P +T++ VI C K+D A L M E+G +P+ Y+TL+ L
Sbjct: 64 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 29/157 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + A +++ M G N++TY IL+A +++ +K GL PD
Sbjct: 331 CKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDT 390
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT +MD + K G + ELL E ++RG+ P VV TFN ++
Sbjct: 391 ITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVV------------------TFNVLM 432
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
LC GK++ LL M E G +P+ Y++++K+
Sbjct: 433 NGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQ 469
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
++EA ++ + G +PD TYTA++DG+CK+G + L N+ ++ G+TPNVVT
Sbjct: 266 VVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTA 325
Query: 92 -----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LH + G T+N ++ LC G I +A+ L+ M E G
Sbjct: 326 LADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG 385
Query: 135 KIPSRTLYDTLI 146
P Y TL+
Sbjct: 386 LHPDTITYTTLM 397
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A K+++ M + G HP+ TYT L +A E+L + + GL+P V
Sbjct: 366 CKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTV 425
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
T+ +M+G C G+ + LL +E+G+ PN T +
Sbjct: 426 VTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRG 485
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G +P + T+N +I+ C + +A L M E + + Y+ LIK
Sbjct: 486 MCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIK 538
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I EA+ +LM ++ G PDV +YT ++DG+C VG +V++L+ E +G+ PN+
Sbjct: 126 IREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLY---- 181
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I LC GK+ + +L M + G P +Y TLI
Sbjct: 182 --------------TYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLI 222
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC+ + + +++ M G PN+ TY+ ++E ++L + G+ PD
Sbjct: 155 YCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPD 214
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
YT ++DGFCK+G + +L +E R + P+ + L +
Sbjct: 215 HVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFN 274
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+ +I C +G++ KA L M + G P+ Y L L
Sbjct: 275 EMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGL 330
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E KV+ M G P+ YT L AY++ ++ + PD
Sbjct: 191 CKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDS 250
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN- 94
++A++ G G+ E +L NE I++G P+ VT LHN
Sbjct: 251 IAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQ 310
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ IG P +T+ + LC G++D A LL M G + + Y+T++ L
Sbjct: 311 MVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGL 365
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + EA+ V M + G P+V TY+ I+EA ++ + G KPD
Sbjct: 316 CKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDA 375
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
++Y ++ G+CK R +E +L NE I +G+TP+ V TLIH N
Sbjct: 376 FSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKN 435
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G++P T++ ++ C G + KA L +M P +Y+ LI +
Sbjct: 436 MHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAM 490
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + YM P++ TY L EA +L + + + P+++T+ ++
Sbjct: 253 EALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLV 312
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
D CK G+ +E + E GV P+VVT L +I G
Sbjct: 313 DAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCK 372
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P ++N +I+ C +ID+A L M G P Y+TLI L Q
Sbjct: 373 PDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ 422
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V M G P+ T+ L +A E + + G +P VYTYT +++
Sbjct: 149 AFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIIN 208
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDIGHI-------P 102
G CK+G + L + E G PNVVT LI ++ +DI P
Sbjct: 209 GLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISP 268
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N++IQ LC + +A LL M +P+ ++ L+
Sbjct: 269 DIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLV 312
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+ + M NG P++ TY++L +A+ + +++ LKPD+
Sbjct: 421 CQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDI 480
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++D CK G + +L +E +G+ PNV + +I
Sbjct: 481 AMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQ------------------IYTTII 522
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G +D+AL M G P Y+ +I+ Q
Sbjct: 523 NNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQ 562
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +ARK+ +F G PNV YT + EA E N++ DG PD
Sbjct: 491 CKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDE 550
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
++Y ++ GF + + +L+ E +RG T
Sbjct: 551 FSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--- 101
GL PD+YT + ++D F + R + + ++ I+ G+ P+ VT L N + +G
Sbjct: 125 GLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQA 184
Query: 102 -------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
P T+ +I LC +G+ A L M E G P+ Y+ LI
Sbjct: 185 VEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDS 244
Query: 149 L 149
L
Sbjct: 245 L 245
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/211 (26%), Positives = 81/211 (38%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ A + M + G PNV TYT L AYE++ + ++G P+
Sbjct: 368 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 427
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
+YTY A +D CK R+ E ELLN+A G+ + VT
Sbjct: 428 IYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFC 487
Query: 90 ----------IHLHN---------------------VIDIGHIPRTITFNNVIQALCGVG 118
+ L+N V+ +G IP T+ ++I C G
Sbjct: 488 RMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEG 547
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
ID AL M HG +P Y +LI L
Sbjct: 548 DIDLALKYFHNMKRHGCVPDSFTYGSLISGL 578
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C K +A ++++ M NG+ PNV T+T L +A+ + + V++D KP+
Sbjct: 298 CKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPN 357
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH-------------N 94
V+TYT+++ G+CK + N L + E+G+ PNV TLI+ H N
Sbjct: 358 VHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMN 417
Query: 95 VI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ D G +P T+N I +LC + +A LL + G Y LI++ +Q
Sbjct: 418 LMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQ 476
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + + M G+ P+ T T++ A + + G KP++ +T+++
Sbjct: 235 EADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLI 294
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHLHNVIDIGH 100
DG CK G + E+L E + G PNV T + L V +
Sbjct: 295 DGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTY 354
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ ++I C K+++A +L M E G P+ Y TLI
Sbjct: 355 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 400
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + E+ ++ + G P TYT I A + N+K G PD
Sbjct: 508 FCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPD 567
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+TY +++ G CK +E +L I+RG++P VT + L
Sbjct: 568 SFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTL 609
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 63/207 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C F A ++++ M D G+ PN+ TY EAYE+L + GL+ D
Sbjct: 403 HCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEAD 462
Query: 51 VYTYTAVMD-----------------------------------GFCKVGRSNEVMELLN 75
TYT ++ FC+ + E L
Sbjct: 463 GVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQ 522
Query: 76 EAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ G+ P T L + HN+ G +P + T+ ++I LC
Sbjct: 523 LVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKS 582
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTL 145
+D+A L M + G P TL
Sbjct: 583 MVDEACKLYEAMIDRGLSPPEVTRVTL 609
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V D M G P+ ++Y ++ EA L + G PD T T ++
Sbjct: 201 AENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILT 260
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
C+ G L+N AI + +ID+G P I F ++I LC G
Sbjct: 261 ALCENG-------LVNRAI-----------WYFRKMIDLGFKPNLINFTSLIDGLCKKGS 302
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +A +L M +G P+ + LI L
Sbjct: 303 IKQAFEMLEEMVRNGWKPNVYTHTALIDGL 332
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------V 86
EA M+M+++N GL P T V++ ++G + +E RGV P+ V
Sbjct: 165 EAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMV 224
Query: 87 VTLIH----------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ L +I G IP T ++ ALC G +++A+ M + G
Sbjct: 225 IGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFK 284
Query: 137 PSRTLYDTLIKKL 149
P+ + +LI L
Sbjct: 285 PNLINFTSLIDGL 297
>gi|302755512|ref|XP_002961180.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
gi|300172119|gb|EFJ38719.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
Length = 497
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 29/144 (20%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V+D M NG P+VTTY+ + +A +L+ ++ D +KPDV + + G+
Sbjct: 311 VLDLMAANGVRPDVTTYSTIMNWWSSAGVADKAQTILLEMQQDRVKPDVRAFAILAKGYV 370
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
+ GR++E LL + GV PNVV + +I C +G++D
Sbjct: 371 RSGRTHEAESLLQDMSLHGVAPNVVV------------------YTTIISGWCSMGRMDD 412
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLI 146
AL +L LM E G+ P+ TL+
Sbjct: 413 ALRVLELMLERGEAPNLNTVQTLV 436
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A+ ++ M + P+V + IL EA +L ++ G+ P+V YT ++
Sbjct: 342 KAQTILLEMQQDRVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTII 401
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
G+C +GR ++ + +L +ERG PN+ T+
Sbjct: 402 SGWCSMGRMDDALRVLELMLERGEAPNLNTV 432
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 42/168 (25%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNE 69
G+ P+V YT+ EA ++L ++ DGL PD + V++G+C G+ E
Sbjct: 46 GHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEE 105
Query: 70 VMELLNEAIERGVTPNVVT--------------------LIHLHNV----------IDIG 99
M ++ E ++ P T ++HL N ++
Sbjct: 106 AMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTRNSPSSEDGLEPV 165
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T N ++ A C G++++A ++ ++ G P Y+TL K
Sbjct: 166 ARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAK 213
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C + EA +V+ + G P+ TY T+ +AY +++ ++KN LKP+
Sbjct: 180 WCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPN 239
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++ +C+ G ++LL+ G+ P+VV N + G++ + +
Sbjct: 240 LRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAF----NTLLKGYVEQQSSQQQQ 295
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ K ++L LM +G P T Y T++
Sbjct: 296 DFQSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIM 331
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 41/187 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKN------ 44
+CN+ EA +V+ M P +TY L +A ++++++ N
Sbjct: 97 WCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTRNSP 156
Query: 45 ---DGL----KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------- 88
DGL +P++ T +++ +C+ GR E ++ G+ P+ VT
Sbjct: 157 SSEDGLEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYA 216
Query: 89 ----LIHLHNVI-DIGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
+ L ++I D+ + P T+ +I C G ++ L LL + G P
Sbjct: 217 AAGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVV 276
Query: 141 LYDTLIK 147
++TL+K
Sbjct: 277 AFNTLLK 283
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A + M + G P TT+T L +A+++ + ++G+ P+V
Sbjct: 446 CKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNV 505
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+TA++ G C + E EL +E +ER + P +T+N +I
Sbjct: 506 YTFTALISGLCSTNKMAEASELFDELVERKIKPT------------------EVTYNVLI 547
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C GKIDKA LL M++ G +P Y LI L
Sbjct: 548 EGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGL 585
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C DF A++ I +M NG+ ++ TY +L EA E+ ++ GL DV
Sbjct: 236 CELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADV 295
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP------NVVTLIHLHNVID-------- 97
TY ++ GFC++ + ++L++E +E G +P +V + ID
Sbjct: 296 VTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVK 355
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P +N +I +LC G +DKA LL M P+ Y LI
Sbjct: 356 VGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILI 407
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
++ FF+ ++ M D G P+ YT + +A+E + + P+V
Sbjct: 660 DRKTFFD---LLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVV 716
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVI 96
TYTA+M+G CK G + L V PN +T I LH+ +
Sbjct: 717 TYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAM 776
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + T+T N +I+ C +G+ +A +L M E+G P Y TLI
Sbjct: 777 LKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLI 826
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A + M PN TY+IL A + DG+ V
Sbjct: 376 CKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETV 435
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
Y Y ++++G CK G + L E +GV P T L +
Sbjct: 436 YAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNK 495
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ID G P TF +I LC K+ +A L + E P+ Y+ LI+
Sbjct: 496 MIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIE 548
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ N EA ++ D + + P TY +L +A+E+L ++ GL PD
Sbjct: 516 CSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDT 575
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHIPRTITFN-N 109
YTY ++ G C GR ++ + +++ ++ V N + LH G + ++ +
Sbjct: 576 YTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCE 635
Query: 110 VIQA------LCGVGKIDKALL---------LLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+IQ +C ID AL LL M++ G P +Y ++I ++
Sbjct: 636 MIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKE 693
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C F EA KV+ M +NG P+ TY+ L + ++ + N GL+PD
Sbjct: 794 FCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPD 853
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+ Y ++ G C G ++ EL ++ + RG+ P+
Sbjct: 854 LVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
GL + T+ ++ GFCK+GR +E ++L+E E G+ P+ VT L
Sbjct: 779 GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGAS 838
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+++ G P + +N +I C G++DKA L M G IP
Sbjct: 839 VKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIP 887
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA M G + ++ + +L +++L ++ + GL+PD
Sbjct: 620 YCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPD 679
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YT+++D + K G + E + + PNVVT L N
Sbjct: 680 NVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMN---------------- 723
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G++D+A LL M P+ Y + L ++
Sbjct: 724 --GLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKE 763
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F+A ++ MF N P V T + L +E+ N G++PD
Sbjct: 165 YVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPD 224
Query: 51 VYTYTAV-----------------------------------MDGFCKVGRSNEVMELLN 75
YT +AV + G CK R +E +E+
Sbjct: 225 PYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKR 284
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
+G+ +VVT L ++++G P + ++ L G
Sbjct: 285 SLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQG 344
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
KID A L+ + G +P+ +Y+ LI L
Sbjct: 345 KIDDAYELVVKVGRFGFVPNLFVYNALINSL 375
>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A+ +I M G P V YT ++EA M +K+ G+ P++
Sbjct: 197 CRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNL 256
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
YTY +MDG+CK + + L ++ G+ PNVVT L + +
Sbjct: 257 YTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQ 316
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G +P + FN++I G +A LL M + P Y LIK
Sbjct: 317 MAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIK 369
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 28/151 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
YC + +A + M D+G PNV T+ I L A + + G+ P+
Sbjct: 266 YCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPN 325
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPR------ 103
V + +++DG+ K G +E +LL E + ++P+V T I + N +G +
Sbjct: 326 VVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILK 385
Query: 104 ----------TITFNNVIQALCGVGKIDKAL 124
++ +N++I C G ++KAL
Sbjct: 386 RMEKEGVPANSVVYNSLIDGYCKEGNMEKAL 416
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH- 91
+E+ N+ + L P V TY ++D C+ G L++E +++G+ P VV TLIH
Sbjct: 171 WELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHG 230
Query: 92 -------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
+ D G P T+N ++ C + +AL L M + G P+
Sbjct: 231 LCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPN 290
Query: 139 RTLYDTLIKKL 149
+ LI L
Sbjct: 291 VVTFGILIDAL 301
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
I +A + +++ +GL+PD Y ++ G +VM L + I+ G+ PN VT
Sbjct: 418 IFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVT 474
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG---- 46
+C D A ++ M ++G P TTY I+ A++ + +K G
Sbjct: 220 WCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDE 279
Query: 47 -LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHL---------- 92
KPDV +YT V+ G G+ ++ ++ +E G TP++ T LI +
Sbjct: 280 NCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDA 339
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++I G+IP +T+ +I+ LC GKID+A+ LL M G P+ Y+ LI
Sbjct: 340 VAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGY 399
Query: 149 LDQQ 152
L ++
Sbjct: 400 LFEE 403
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A V D M GY PNV TYT+L A ++L +K +G +P+V
Sbjct: 331 CKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNV 390
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPN------VVTLIHLHN--------- 94
TY ++ + G + + L E + +G PN +++ + +
Sbjct: 391 QTYNVLIGYLFEEGDIEKALHLF-ETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAA 449
Query: 95 -----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++D G++PR FN V+ L G + + LL + ++ ++
Sbjct: 450 RMVVEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRELLRMQEKYTRL 496
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 22/121 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
PD TY + DG+C+V ++ +++L + +E G+ P T I L G +
Sbjct: 208 PDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDF 267
Query: 102 ---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +++ V+ L G++DKA + M G PS Y+ LI
Sbjct: 268 FLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALI 327
Query: 147 K 147
+
Sbjct: 328 Q 328
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + M HP+V TY+ L A E+L GL PD
Sbjct: 596 YCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPD 655
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIPR------ 103
V+TY +++ GFCK G + +L ++G++PN++T L N + G I R
Sbjct: 656 VFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFD 715
Query: 104 ----------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+ +I C G + KA L M G P +Y LI
Sbjct: 716 GIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALI 768
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 66/175 (37%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V + M G PN YT L EA +L + G++PDV
Sbjct: 457 CRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDV 516
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y +V+ G CK + E + L E IERG+ PNV T LIH
Sbjct: 517 LCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKE 576
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P + +I C G +A + M P Y LI L
Sbjct: 577 MLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGL 631
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 32/153 (20%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
++ FE +K++D G +V TY+IL EA ML + + GLKP Y
Sbjct: 288 DEAFELKKLMD---KKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAY 344
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
TA++DGF + G S E + E + RGV N+ T+N +++ +
Sbjct: 345 TALIDGFMRQGDSGEAFRVKEEMLARGVKLNL------------------FTYNALVKGV 386
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
C G ++KA LL M G P Y+ +I+
Sbjct: 387 CKFGDMEKADALLNEMIMVGIKPDTQTYNNMIE 419
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++++ M D P+ TYTIL EA + ++++ L P+
Sbjct: 805 FCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPN 864
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYTA++ G+ GR +E+ L +E I + + P+ VT
Sbjct: 865 ALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVT 902
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYTYT +++ + G + E LL E E+G +P++VT +N
Sbjct: 235 DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVT------------------YNV 276
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
VI LC G++D+A L LM + G + Y LI +Q
Sbjct: 277 VIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQ 319
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + D EA +V + M G N+ TY L +A +L + G+KPD
Sbjct: 351 FMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPD 410
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +++G+ K ++ V +LL+E + + +P T +
Sbjct: 411 TQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNL------------------VPTAYTCGMI 452
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I LC G I+ A + +M G P+ +Y TLIK
Sbjct: 453 INGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIK 489
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A ++ D M G P+ Y+ L +A + + G
Sbjct: 736 YCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF-AS 794
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ A+MDGFCK G+ E +LL + +++ V P+ VT
Sbjct: 795 TSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVT 832
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 18/119 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E +L ++ G P + TY V+ G C+ G +E EL ++G+ +V
Sbjct: 254 EGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADV------- 306
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T++ +I + +A L+L M+ G P Y LI +Q
Sbjct: 307 -----------FTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQ 354
>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TYTIL EA ++ ++ +G KPD + Y +M G+C + R +E +E+
Sbjct: 232 PNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEV 291
Query: 74 LNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
N E+GV P+++ TLI L + + GH P +T+ +++ +C
Sbjct: 292 YNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCR 351
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ AL LL M G P+ Y+TL+ L
Sbjct: 352 KGETLAALALLEEMEMKGCSPNTCTYNTLLHGL 384
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMN----------VKNDGLKPDV 51
CN + EA +++D + + G+ P+ Y TI++ Y ML +K G++PD+
Sbjct: 245 CNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDL 304
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY ++ G K GR +E +LL E+G P+ VT L N +
Sbjct: 305 ITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEE 364
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T T+N ++ LC DKA+ L M G Y T ++ L
Sbjct: 365 MEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRAL 419
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + A +++ M G PN TY L +A E+ +K+DGLK D+
Sbjct: 350 CRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDM 409
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE 79
+Y + C VGR + E+ + A+E
Sbjct: 410 ASYATFVRALCSVGRVADAYEVFDYAVE 437
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 28 TTYTILEAYEMLMNVK-NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
+ Y+ L +N+ +DG+ PD T + C R ++ +EL+ E + +P++
Sbjct: 139 SKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDI 198
Query: 87 V-------------TLIHLHNVIDIGHI-----PRTITFNNVIQALCGVGKIDKALLLLF 128
TL ++ ID P +T+ +I +C + +A L+
Sbjct: 199 YSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATRLVD 258
Query: 129 LMYEHGKIPSRTLYDTLIK 147
++ E G P LY+T++K
Sbjct: 259 ILEEEGFKPDCFLYNTIMK 277
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C D AR V D + G P+V ++ T++ Y NV+ ++ + PD
Sbjct: 236 FCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPD 295
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI------ 98
V+TY+A+++G CK R E L +E E G+ PN VT L H ID+
Sbjct: 296 VFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFE 355
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I LC G + +A LL M +G P + + TL+
Sbjct: 356 IMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + + M D G P++ TY L EA ++L + +G KPD T+T +MD
Sbjct: 350 ALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMD 409
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIP 102
G CK G + +E+ + +E G+ + V L +++ GH P
Sbjct: 410 GCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKP 469
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ VI C G + LL M G++P Y+ L+ +Q
Sbjct: 470 DDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQ 519
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D EARK+++ M NG+ P+ T+T L A E+ + +G++ D
Sbjct: 377 CRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDD 436
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
+TA++ G C+ GR + +L + + G P+ T L
Sbjct: 437 VAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKE 496
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +P +T+N ++ C G++ A +LL M +P+ ++ L+
Sbjct: 497 MQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILL 548
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH 91
+E + V + G P+VY + +M GFCK+G + +E RG+ P+VV TLI
Sbjct: 210 CWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLIS 269
Query: 92 -------------LHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L +V++ I P T++ +I LC ++++A L M E G +P
Sbjct: 270 GYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVP 329
Query: 138 SRTLYDTLI 146
+ + TLI
Sbjct: 330 NGVTFTTLI 338
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 28/160 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
+ D GY PNV + IL A + + GL+P V ++ ++ G+C+
Sbjct: 217 VLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKN 276
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNN 109
E L + ++P+V T L N + ++G +P +TF
Sbjct: 277 VEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTT 336
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I C GKID AL +M + G P Y+ LI L
Sbjct: 337 LIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGL 376
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +++ M G+ P+ TYT++ ++L ++ DG P V
Sbjct: 447 CRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGV 506
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
TY A+M+GFCK G+ LL+ + V PN +T N++ GH
Sbjct: 507 VTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITF----NILLDGH 551
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C D A + + G P++ Y +L+A +++ ++ +G+ PD+
Sbjct: 339 CQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDI 398
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVIDI--- 98
+TY V++G CK+G ++ LLN AI +G P++ T + + N I I
Sbjct: 399 WTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDS 458
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P IT+N+++ LC K + + ++ E G +P+ Y+ LI+ L
Sbjct: 459 MWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESL 513
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI------------------LEAYEMLMNVKN 44
C K E K+++ + NG PN+ T+ I +EA L + N
Sbjct: 227 CKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVN 286
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
GL+PD +TY ++ G+ KVG+ + +L +A +G P+
Sbjct: 287 KGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPD------------------E 328
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ ++I +C G ID AL L G PS LY+TLIK L QQ
Sbjct: 329 FTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQ 376
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 28/166 (16%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
+A ++++ M G P++ TY ++ +A +L G PD++T+ +
Sbjct: 380 LKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTL 439
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGH 100
+DG+CK + + + +L+ GVTP+V+T + N +++ G
Sbjct: 440 IDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGC 499
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P IT+N +I++LC K+ +AL LL + G IP + T+I
Sbjct: 500 LPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVI 545
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 34/158 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----EAYEMLMNVK------NDGLK 48
+CN D EA ++ M + Y V TY I+ E +M M K + G
Sbjct: 548 FCNNGDLDEAYQLFRRM-EQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCD 606
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD YTY ++DGFCKVG N + L + IE IG +P TF
Sbjct: 607 PDSYTYRVMIDGFCKVGNVNSGYDFLLKEIE------------------IGFVPSLTTFG 648
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSR--TLYDT 144
VI LC ++ +A+ ++ LM G +P T++D
Sbjct: 649 RVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVVTIFDA 686
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 35/149 (23%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT--------------ILEAYEMLMNVKNDGL 47
YC + A ++D M+ +G P+V TY ++E ++M+M G
Sbjct: 443 YCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIME---KGC 499
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
P++ TY +++ CK + E ++LL E RG+ IP ++F
Sbjct: 500 LPNIITYNILIESLCKARKVTEALDLLEEIRNRGL------------------IPDPVSF 541
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI 136
VI C G +D+A L M + +I
Sbjct: 542 GTVISGFCNNGDLDEAYQLFRRMEQQYRI 570
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 35/180 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++++ M G N Y + EAYE+ + G+ P
Sbjct: 156 FCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPH 215
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
+ T+ +M CK G E +LLN+ ++ GV PN+ T
Sbjct: 216 IATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVV 275
Query: 90 ---IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+LH +++ G P T+N +I VGKI A +L G +P Y +LI
Sbjct: 276 EAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLI 335
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 32/175 (18%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D E K+I + G PN+ TY IL EA ++L ++N GL PD ++
Sbjct: 486 DVMETFKMI---MEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFG 542
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------HNVID 97
V+ GFC G +E +L ++ + V ++ H + D
Sbjct: 543 TVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGD 602
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P + T+ +I C VG ++ L E G +PS T + +I L Q
Sbjct: 603 KGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQ 657
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA V + M P++ +Y + +A+++ + +K++G+ PD
Sbjct: 86 YGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPD 145
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V T+T + FC+ R + LLN +G N V T+I +
Sbjct: 146 VCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFN 205
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P TFN ++ LC G + + LL + ++G P+ ++ I+ L
Sbjct: 206 KMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGL 261
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EAR++ D G +V Y +L EA+E+ ++ DGL PDVYT+ A+M
Sbjct: 282 EARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALM 341
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
DG CK GR ++ LL + G TP+V TLI L + +G+
Sbjct: 342 DGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYE 401
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I C G+I+ AL L + G + Y+T++ L
Sbjct: 402 PDVVTYNTLIDESCKGGRIEDALRLFEEISAKG-FANTVTYNTILNGL 448
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID GY T L Y ++ GL+PD YT+ +M+ F K R + V +L
Sbjct: 95 LIDAFVKAGY-----TQKALAVYRVM---GQSGLRPDTYTFNVLMNAFKKAKRVDSVWKL 146
Query: 74 LNEAIERGVTPNVVTL-IHLHNVIDIGHI----------------PRTITFNNVIQALCG 116
E + +PNV+T I + V G + P T+ ++I L
Sbjct: 147 FEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGK 206
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +DKA L M G + +R +Y++LI L
Sbjct: 207 SGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGL 239
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 98/235 (41%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
K+ + M + PNV TY+IL +A ++ +++K+ G +P+++TYT+++DG
Sbjct: 145 KLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGL 204
Query: 62 CKVG-----------------------------------RSNEVMELLNEAIERGVTPNV 86
K G R++ +L E + +G+ P+
Sbjct: 205 GKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDH 264
Query: 87 VTL-------------------------------IHLHNVI------------------- 96
VT ++L+NV+
Sbjct: 265 VTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGE 324
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P TFN ++ LC G+I A +LL M G P T+Y+TLI L
Sbjct: 325 LEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGL 379
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 34/164 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ M G P+VT Y L EA ++L+ +++ G +PDV
Sbjct: 345 CKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDV 404
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++D CK GR + + L E +G T+T+N ++
Sbjct: 405 VTYNTLIDESCKGGRIEDALRLFEEISAKGFA-------------------NTVTYNTIL 445
Query: 112 QALCGVGKIDKALLLLFLMYEH---GKI-PSRTLYDTLIKKLDQ 151
LC G++D+A L M + G I P Y TL+ Q
Sbjct: 446 NGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQ 489
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH------------- 100
Y +++D F K G + + + + + G+ P+ T L N
Sbjct: 92 YNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQ 151
Query: 101 ----IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT++ +I A+C G ++KAL + M G P+ Y ++I L
Sbjct: 152 NQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGL 204
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K D + ++ M G PNV Y + +A +ML + PDV T
Sbjct: 164 KGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVT 223
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
+ ++ GFC+ G E ++LL EAI RG+ PN ++ LIH L ++
Sbjct: 224 FNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMM 283
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GH P IT +I L G+++ AL++ M E +P +Y+ LI L
Sbjct: 284 GRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGL 336
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 30/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + +ARK+ ++M + P++ Y ++ EA + +++ G PD
Sbjct: 371 FVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYT ++DG+ K G + + LL + ++R PN+ T+ ++
Sbjct: 430 EFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNI------------------FTYASL 471
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C +G A L M G P+ Y LI L
Sbjct: 472 ICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSL 510
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D EA K++ G PN +YT L A ++L+ + G PD
Sbjct: 231 FCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPD 290
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ T A++ G G+ N+ + + + ER V P+ N+ +N +
Sbjct: 291 MITLGALIHGLVVSGQVNDALIVREKMAERQVMPDA-------NI-----------YNVL 332
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC + A LL M E P + +Y TLI
Sbjct: 333 ISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLI 368
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-----------KPD 50
+C + + A ++ M G+ P++ T L ++ ND L PD
Sbjct: 266 FCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPD 325
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLI-------------HLHN 94
Y ++ G CK + LL E +E+ V P+ TLI +
Sbjct: 326 ANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFE 385
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P + +N +I+ C G + +A+ + M + G IP Y TL+
Sbjct: 386 FMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLV 437
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------- 91
+G P Y ++DG+C+ G + LL E +G+ P VVT +IH
Sbjct: 110 EGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTK 169
Query: 92 ----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + G P +N VI ALC +A +L M + P ++T+I
Sbjct: 170 VESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMI 228
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 26/162 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAY--EMLMNVKNDG 46
YCN D + A + M G PNV YT+L AY ML+N
Sbjct: 475 YCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLN----H 530
Query: 47 LKPDVYTYTAVMDGF--CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
P+ T +++G C+ G N +A E+ +V +I G PR
Sbjct: 531 CPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDV-----FRGLISDGLDPRI 585
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N +I +LC + KA+ L M G +P + +L+
Sbjct: 586 SAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLL 627
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + + G++PD
Sbjct: 146 FCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH---NVIDI------ 98
VYTY+ +++G CK + N+ EL E I G+ PN V TLI H ID+
Sbjct: 206 VYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYK 265
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 EMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A + M G+ P++ TY L +A +++ + GLKPD
Sbjct: 251 HCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + I+ + + V LI L
Sbjct: 311 KITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ +I C G + LL M G +P
Sbjct: 371 EMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVP 414
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A+ +ID M G P+ TYT L
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G +LL E
Sbjct: 347 VAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G P VVT
Sbjct: 407 MQRDGHVPCVVT 418
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--- 101
G +Y + +M FCK G + +E + G+ P+VV+ L N I +G +
Sbjct: 131 GYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEG 190
Query: 102 -------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T++ +I LC K++ A L M +G +P+ + TLI
Sbjct: 191 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLI 248
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K+ A +++ M + GY P+ +YT L EAY++L +K G PD+
Sbjct: 252 CRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI 311
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HLHN 94
Y V+ GFC+ GR+ + ++L + G PN+V TL+ HL
Sbjct: 312 IHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEE 371
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P N +I+ C VGKI++A ++ + +HG+ P + ++ ++
Sbjct: 372 MMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSRI 426
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A KV++ M NG PN+ +Y L EA L + G P
Sbjct: 321 FCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPH 380
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
A++ GFC VG+ E ++ E ++ G P+ T +
Sbjct: 381 FAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWV 420
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 28/156 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN +Y IL AY + + + PDV +Y +M C+ + N ++L
Sbjct: 204 PNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDL 263
Query: 74 LNEAIERGVTPNVVTLIHLHNVID-----------------IGHIPRTITFNNVIQALCG 116
L + + +G P+ ++ L N + G P I +N VI C
Sbjct: 264 LEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCR 323
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G+ A +L M +G +P+ Y TL+ L Q
Sbjct: 324 EGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQ 359
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I A+++ + + P+ +Y ++ FC G+ + L N+ +R V P+V +
Sbjct: 187 IKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRI 246
Query: 89 LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L+ L ++++ G++P +++ ++ +LC K+ +A LL M G
Sbjct: 247 LMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKG 306
Query: 135 KIPSRTLYDTLI 146
P Y+T+I
Sbjct: 307 CNPDIIHYNTVI 318
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V D + G P+V +Y L E + + + G+ PD
Sbjct: 152 FCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH---- 100
VYTY+ +++G CK + ++ +L +E +E+G+ PN VT L + +D+
Sbjct: 212 VYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYK 271
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P +T+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLI 324
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 5 KNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
KN + + A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 259 KNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKI 318
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNV 95
TYT ++DG CK G + E I+ + + V LI L +
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +G P T T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 379 LSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 293 CKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDD 352
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G + +LL E
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKE 412
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 413 MQRDGHVPSVVT 424
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKEGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 159 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M E G +P+ + TLI
Sbjct: 219 INGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLI 254
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + AR++ D M +G PNV T L A E ++ GLK +
Sbjct: 426 YCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGN 485
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYTA++ FC V + MEL +E +E G +P+ + TLI L
Sbjct: 486 AVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLS 545
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + G P ++FN +I C K+D+A +L M G P Y+TLI +
Sbjct: 546 KMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSK 603
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 29/171 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V+ M + G+ P++ ++ +L EAYEML ++N G+KPD TY ++
Sbjct: 540 ASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLIS 599
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----NVIDIGHI----------- 101
F K G + L+ + ++ G+ P VVT LIH + N+ + I
Sbjct: 600 HFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVP 659
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+ +N +I +LC ++D AL L+ M G P+ ++ + K L ++
Sbjct: 660 PNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEK 710
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN TY L A E+ + DG+ P+V T ++DG CK GR N +E
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
NE +G+ N V T+ +I+A C V I+KA+ L M E
Sbjct: 474 FNEMQGKGLKGNAV------------------TYTALIRAFCNVNNIEKAMELFDEMLEA 515
Query: 134 GKIPSRTLYDTLIKKLDQ 151
G P +Y TLI L Q
Sbjct: 516 GCSPDAIVYYTLISGLSQ 533
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 2 YCNKNDFFEARKVI-DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
YC + EA K+ D + PN Y IL A ++ ++K G+KP
Sbjct: 636 YCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKP 695
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ T+ A+ G + ++ EL++ E P+ +T+
Sbjct: 696 NTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITM 735
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR + D M P+V T++ L +A +L + PD
Sbjct: 486 FCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPD 545
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
VYTYT+++DGFCKVGR E +L +RG PNVVT L
Sbjct: 546 VYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLE 605
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ G P IT+ ++I CG G +++A +L
Sbjct: 606 EMVGNGVQPNVITYRSLIGGFCGTGDLEEARKIL 639
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A KV + + P+V Y+ L EA ++ ++ + +PDV
Sbjct: 277 CKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDV 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
T+TA+MDG CK R E ++L +R TPNV+T L
Sbjct: 337 VTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKR 396
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+N++I C +D ALLL+ M G +P Y+TLI L
Sbjct: 397 MIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 451
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EA M G PN TY +L AY +L +K GL P+V
Sbjct: 137 CKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNV 196
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ V+ GFC+ + + +L + +E G PN+V T+N ++
Sbjct: 197 VTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV------------------TYNTLL 238
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G +D+A LL M E G P + YDTL+ L
Sbjct: 239 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 276
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A K+ M +NG PN+ TY L EAYE+L ++ GL+PD
Sbjct: 206 FCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPD 265
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++Y +M G CK G+ + +++ + P+VV ++ +
Sbjct: 266 KFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV------------------AYSTL 307
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G++D+A L M E+ P + L+ L
Sbjct: 308 IAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGL 346
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 63/208 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K+ + M +N P+V T+T L EA ++L +++ P+V
Sbjct: 312 CKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 371
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVID-------- 97
TY++++DG CK G+ + E+ I RG+ PNVVT LIH + N +D
Sbjct: 372 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEE 431
Query: 98 ---IGHIPRTITFNNV-----------------------------------IQALCGVGK 119
G +P IT+N + I C + +
Sbjct: 432 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 491
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
ID A L M + +P + TL++
Sbjct: 492 IDMARTLFDDMLKQAVLPDVVTFSTLVE 519
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 31/164 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLKP 49
+C A ++++ M NG PNV TY L EA ++L ++ D K
Sbjct: 591 FCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKA 650
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++ Y +MDG C+ GR + +ELL EAI++ TP PR +
Sbjct: 651 DMFAYRVMMDGLCRTGRMSAALELL-EAIKQSGTP-----------------PRHDIYVA 692
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKLDQQ 152
+I+ LC ++ KA+ +L M K P+ Y+ +I++L ++
Sbjct: 693 LIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELARE 736
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N A +++ M G P++ TY L EA + ++K PD
Sbjct: 416 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPD 475
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
V TY+ ++ GFCK+ R + L ++ +++ V P+VVT L
Sbjct: 476 VITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLE 535
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P T+ +++ C VG++ +A +L M + G P+ Y LI
Sbjct: 536 EMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 588
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 68/185 (36%), Gaps = 49/185 (26%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y ++ + + I E +L N G+ P+V+TY V+ G CK G ++ ELL E
Sbjct: 25 YTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEE 84
Query: 77 AIERGVTPNVVT---LIHL--------------------HNVIDI--------------- 98
E G P+ +IH NVI
Sbjct: 85 MRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPE 144
Query: 99 -----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G +P T+N +I C V K+ +A LLL M E G P+ Y T+I
Sbjct: 145 ATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIH 204
Query: 148 KLDQQ 152
+Q
Sbjct: 205 GFCRQ 209
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP 102
K G +VYTY + + + R +E +L G+TPNV
Sbjct: 16 KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNV---------------- 59
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ VIQ LC G +DKA LL M E G +P +Y+ +I L
Sbjct: 60 --FTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHAL 104
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 36/179 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDG-- 46
C + EA ++ M GY PNV TY L + +E ++N N G
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLN-GNGGFG 231
Query: 47 --LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---------- 91
+KP++ Y ++D CK G ++ EL E RG++P+VV ++IH
Sbjct: 232 VTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEG 291
Query: 92 ----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++D G P +TFN +I ALC GK+++A LL LM + G+ P Y+TLI
Sbjct: 292 AKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLI 350
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M G P+ TY L +A ++ +++++ G++ D
Sbjct: 319 CKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDA 378
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI--- 101
+Y +++G+CK GR E +L E + + + P V+T L V D ++
Sbjct: 379 VSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGE 438
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + T+N ++ LC + +A+ L + H PS +++ LI L
Sbjct: 439 MKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGL 493
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA+K+ M P V TY L +A+ + +K L P+
Sbjct: 388 YCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPE 447
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI------ 98
TY ++DG CK +E MEL + P++ L I+I
Sbjct: 448 SCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFN 507
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G P IT+ +I LC G+++ A L M E G P+ ++TL++ Q
Sbjct: 508 RLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQ 565
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C N EA ++ Y+ ++ + P++ + L A E+ + ++GL+P+V
Sbjct: 459 CKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNV 518
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G CK G+ +L E+G PN+V TFN ++
Sbjct: 519 ITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLV------------------TFNTLM 560
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ C ++ K + LL M E P + ++ L +
Sbjct: 561 RGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSK 600
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA V +++ D P ++++ L + + + GL PD T ++
Sbjct: 75 EAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILI 134
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ +C + + + + +L E + RG H P T+TF ++++ LC
Sbjct: 135 NCYCNLNKVDFGLAVLGEMLRRG------------------HSPNTVTFTSLVKGLCLGS 176
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I +A LL M G P+ Y TL+ L
Sbjct: 177 RISEATGLLRKMVRMGYRPNVVTYGTLLNGL 207
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A V++ MF G P+V TYTIL +A ++L + + G PD+
Sbjct: 177 CGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDI 236
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY V++G C+ GR + ME L G PN V+ +N++
Sbjct: 237 VTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVS----YNIVLKGLFTAERWEDAEK 292
Query: 97 ---DIGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
++ H P +TFN +I LC G ++ A+ +L M ++G P+ Y+ L+
Sbjct: 293 LMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFC 352
Query: 151 QQ 152
+Q
Sbjct: 353 KQ 354
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A + ++ M G +P++ +Y L A E+L +K+ G P
Sbjct: 351 FCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPV 410
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+ +Y V+DG K G++ E +ELL+E +G+ P+++T + +
Sbjct: 411 LISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFC 470
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D+G P +N ++ LC + A+ L M G +P+ + Y L++ L
Sbjct: 471 KVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGL 526
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A K+++ M G PNV T+ +L A E+L + G P+ +Y ++
Sbjct: 289 DAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLL 348
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
FCK + ++ ME + + RG P++V TL+ LH + D G
Sbjct: 349 HAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCS 408
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P I++N VI L GK +AL LL M G P Y T+ L
Sbjct: 409 PVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGL 456
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------L 89
++PD YTY ++ G C GR++ + +L + RG P+VVT +
Sbjct: 162 VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAM 221
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L + D G P +T+N V+ +C G+++ A+ L + +G P+ Y+ ++K L
Sbjct: 222 KLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGL 281
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 21/99 (21%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDV Y A++ G+C G+ + L V D+ P T+N
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRL---------------------VADMPVEPDAYTYN 170
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ LCG G+ AL +L M+ G +P Y L++
Sbjct: 171 TLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLE 209
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + E V D M NG N T++I EA + ++ G PD
Sbjct: 271 YATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPD 330
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+ TYT V+DG CK+GR ++ M + I+ G++PN++ TLIH +
Sbjct: 331 IVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFY 390
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P F +I L GK+ +A L LM G P+ Y+T+I
Sbjct: 391 EMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMI 443
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V+ M D PN TTY L EA +L + DG +P+V
Sbjct: 167 CKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNV 226
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++D CK G E E+ N I+ G P+ T L+ ++NV D+
Sbjct: 227 VTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDL 286
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G TF+ I A C G++D+A L M + G +P Y T+I L
Sbjct: 287 MVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGL 341
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 34/176 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + EA +++ M +G PNV TY +L EA E+ ++ G KPD
Sbjct: 201 YLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPD 260
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN--------------------VVTLI 90
TY +++ G+ G E+ + + ++ G+ N +T I
Sbjct: 261 ATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFI 320
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +G +P +T+ VI LC +G++D A+ M + G P+ + TLI
Sbjct: 321 KMQQ---LGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLI 373
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + EA ++I M ++G + P+V +Y+ + +AY + + + G+ P
Sbjct: 95 CAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPP 154
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
+V T +V+DG CKV ++ +L + I+ + PN T LIH L
Sbjct: 155 NVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRIL 214
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+N +I LC G +A + M + G P T Y +L+
Sbjct: 215 KEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLL 268
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 19/120 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVV---TLIH--------- 91
G PDV++Y+ ++ G C + E EL++ E G P+VV T+IH
Sbjct: 79 GCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVG 138
Query: 92 -----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P +T N+VI LC V +DKA +L M + +P+ T Y++LI
Sbjct: 139 KAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLI 198
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ M D G P+VT +T + EA ++ + G KP+V +Y ++
Sbjct: 384 KAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMI 443
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNNVIQALCGV 117
G+ G EVM+LL++ + G+ P VT L ++ +G P T +I + C
Sbjct: 444 HGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCED 503
Query: 118 GKIDKALLLL 127
G+I+ L L
Sbjct: 504 GRIEDILTLF 513
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
E K++D M G P T+ L L + + GLKPDV T ++D C+ GR +
Sbjct: 454 EVMKLLDDMLLIGLKPTAVTFNTL-----LDGMVSMGLKPDVDTCKTLIDSCCEDGRIED 508
Query: 70 VMELLNEAIERGVTPNVVT 88
++ L E + + + +T
Sbjct: 509 ILTLFREMLGKADKTDTIT 527
>gi|222631493|gb|EEE63625.1| hypothetical protein OsJ_18442 [Oryza sativa Japonica Group]
Length = 390
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ EA V+D M + G PN TYT I EA +L + G P
Sbjct: 21 CSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPST 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ CKVG EV LL E+ +G TP+V IT+++ +
Sbjct: 81 ATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDV------------------ITYSSYM 122
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G+IDK+ L+ M +G PS + L+
Sbjct: 123 DGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILL 157
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 66/212 (31%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA+++++ M +G+ P+ TY +L E +L G PD
Sbjct: 55 YCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPD 114
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------ 92
V TY++ MDG CK GR ++ L+++ + G+ P+ VTL L
Sbjct: 115 VITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLE 174
Query: 93 --------HNVIDIGHIPRTI--------------------------TFNNVIQALCGVG 118
NV++ + R + TFN V+ +LC +G
Sbjct: 175 CSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLG 234
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
++ KA LFL+ + + Y+TLI+ L
Sbjct: 235 RLHKA---LFLLRSKEFVATVITYNTLIRHLS 263
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------- 91
+G+ PDV TY+ ++ G C G+ E + +L+ +E G PN T ++H
Sbjct: 4 NGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHE 63
Query: 92 ----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L+ +I G P T T+N +++ALC VG ++ LL G P Y + +
Sbjct: 64 AKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMD 123
Query: 148 KL 149
L
Sbjct: 124 GL 125
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ ++D M NG P+ T IL A +L G +V
Sbjct: 126 CKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANV 185
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
Y VM C R V++L + ++G+ PN T I +H++ +G + +
Sbjct: 186 VNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLRS 245
Query: 105 -------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
IT+N +I+ L G+ ++ LLL+ M E G P+ Y +I L ++
Sbjct: 246 KEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCRE 300
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 61/182 (33%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
C + + A+++++ + G+ NV Y L ++ ++ G+ P+
Sbjct: 161 CRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNS 220
Query: 52 YTYTAVMDGFCKVGR--------------------------------SNEVMELLNEAIE 79
+T+ V+ CK+GR NEV LL + IE
Sbjct: 221 WTFNIVVHSLCKLGRLHKALFLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIE 280
Query: 80 RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
G+ PN IT++ VI LC K AL + E PS
Sbjct: 281 GGIAPN------------------DITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSA 322
Query: 140 TL 141
L
Sbjct: 323 FL 324
>gi|356551785|ref|XP_003544254.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 603
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 44/179 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN+ + ++ M G +P++ TY IL +A E+L + GLKPD
Sbjct: 410 FCNEKSXY-----LEIMVSRGCYPDIVTYNILLAALCKDRKVDDAVEILKQLSFKGLKPD 464
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH----------LHNVIDIGH 100
V TY+ ++DG KVG+++ +ELL EA +G+ PN++T +H I I H
Sbjct: 465 VITYSIIIDGLLKVGKTDLALELLEEACTKGLKPNLITFTSVVGGISRKGKVHEAIKIFH 524
Query: 101 I-------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +N +I LC + + G P+ Y+ L+K + +
Sbjct: 525 FLEGLGIRPNAFAYNLIIMGLCKTQQTSR-----------GCKPTEATYNILVKGITSE 572
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ + +V+D +P+V TYT L +A ++L+ + + KP+V
Sbjct: 236 CDRCKLKQGMEVLDRQLQIKCYPDVVTYTELIDAACKDSRVGQAMKLLIEMVSKECKPNV 295
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIP-------- 102
TY A++ G C GR +EV+ L G P+V++ I LH++ G
Sbjct: 296 VTYNALIKGICNEGRLDEVIRFLKNLPSYGYQPDVISYTIVLHSLSSGGRWTDAMKLLAS 355
Query: 103 --------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+TFN +I LC G + KA +L ++ +H P+ Y+ I
Sbjct: 356 MLCKGCSLNVVTFNTLINFLCQKGLLGKAFNVLEMIXKHVCTPNSISYNPSI 407
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY------EMLMNVKNDGLK----PD 50
YC + EA +V+D M PN Y TIL + + M V + L+ PD
Sbjct: 203 YCXSGEVEEALRVLDCM---SVSPNGINYDTILRSLCDRCKLKQGMEVLDRQLQIKCYPD 259
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V TYT ++D CK R + M+LL E + + PNVVT + L
Sbjct: 260 VVTYTELIDAACKDSRVGQAMKLLIEMVSKECKPNVVTYNALIKGICNEGRLDEVIRFLK 319
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N+ G+ P I++ V+ +L G+ A+ LL M G + ++TLI L Q+
Sbjct: 320 NLPSYGYQPDVISYTIVLHSLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLINFLCQK 378
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 34 EAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
EA L + N G + P V TA++ FCK+GR+ ++ E G ++
Sbjct: 131 EASRFLEYMTNKGNIMPCVIACTALISEFCKIGRTKNATRIMGILEESGAVIDIT----- 185
Query: 93 HNVIDIGHIPRTITFNNV-IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + +P+ NNV I C G++++AL +L M P+ YDT+++ L
Sbjct: 186 --IYNFFCLPKK---NNVLIGGYCXSGEVEEALRVLDCMSVS---PNGINYDTILRSL 235
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA++++ M G P+V TYT + EA +L ++K+ ++P+V
Sbjct: 231 CRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNV 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDGFCK G S+ ++L I++ + PN+ I+++ ++
Sbjct: 291 FTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNM------------------ISYSTLL 332
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GKI++AL + M G P LY ++ L
Sbjct: 333 NGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCL 370
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 22 GYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
G P VT+ +L +A + + N G +PD YTY +++G C+ E
Sbjct: 179 GIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVE 238
Query: 70 VMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI----------PRTITFNNVIQ 112
ELL E +G +P+VVT L L+NV + + P T+++++
Sbjct: 239 AKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMD 298
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G +A +L LM + P+ Y TL+ L
Sbjct: 299 GFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGL 335
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 24/158 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR +++ M PN+ +Y+ L EA E+ +K G KPD
Sbjct: 300 FCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPD 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNN 109
Y +++ C V R E L+E + G+ PN +T +H+ T N
Sbjct: 360 AGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVR------------THNR 407
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI LC + ++A L + G + +++L+K
Sbjct: 408 VIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLK 445
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A ++++ M D+ N+ Y I+ EA+ +L + G++PD
Sbjct: 359 YCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPD 418
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+Y +++DG+CK G N+ E N + G T+T+N +
Sbjct: 419 TYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAAT------------------TLTYNAL 460
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ C +G ID AL L FLM + G P+ TL+
Sbjct: 461 LKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLL 496
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 29/175 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNV-KNDGLKP 49
YC +AR+++D + G+ PN+ TYT+L EA ++ + KN L
Sbjct: 288 YCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVV 347
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVI 96
D + AV++G+C++GR + LLNE ++ + N+ ++ HN++
Sbjct: 348 DEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNIL 407
Query: 97 D----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+G P T ++N+++ C G ++KA M +G + Y+ L+K
Sbjct: 408 HEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLK 462
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ ++ + D G+ + TY+ L A+++ + + GL P++
Sbjct: 736 CKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNI 795
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------N 94
TY +++ G CK G + + L + +G++PN + TLI H
Sbjct: 796 VTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQR 855
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ G P T++ +I LC G +++A+ LL M E+ P+ Y TLI+
Sbjct: 856 MIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQ 908
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +A +L ++K+ G D +TY++++ G G + +L + + G+TPN+VT
Sbjct: 741 IEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVT--- 797
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+N++I LC G++ +A+ L ++ G P+ Y+TLI K
Sbjct: 798 ---------------YNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDK 839
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K +A + + M NG+ TY L +A + + G+ P+
Sbjct: 429 YCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPN 488
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIPRT----- 104
+ + ++DGF K G++ + + L E + RG+ N T + N + I +P
Sbjct: 489 EISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVD 548
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+ + C +G +D+A +L + G P+ +++LI
Sbjct: 549 KMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLI 601
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 54/199 (27%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D A ++++ + + G+ P + + L + ++L + N GL P+
Sbjct: 569 YCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPN 628
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
Y A++ G+CK G + L E IE+G+ PN+ +L+ L
Sbjct: 629 TVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQ 688
Query: 94 NVIDIGHIP--------------------------RTITFNNVIQALCGVGKIDKALLLL 127
N++ IP I +N VI LC +G+I+ A LL
Sbjct: 689 NLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLL 748
Query: 128 FLMYEHGKIPSRTLYDTLI 146
+ + G + Y +LI
Sbjct: 749 ADLKDKGFVADNFTYSSLI 767
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
EA E++ +K PD+ TY + G+CK+G + +LNE G P + +LI
Sbjct: 542 EAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLI 601
Query: 91 HLH-------NVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H V DI G P T+ + +I C G + A L M E G +
Sbjct: 602 TGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLV 661
Query: 137 PSRTLYDTLI 146
P+ + +L+
Sbjct: 662 PNLFICSSLV 671
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 18/114 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
++ A E + + G++ ++ Y AVM+G+C+VG++N+ +L+ RG +PN+VT
Sbjct: 259 VVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTL 318
Query: 92 L-------HNVIDIGHIPRTI-----------TFNNVIQALCGVGKIDKALLLL 127
L N+ + + + I F VI C +G+++ A LL
Sbjct: 319 LVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLL 372
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + E ID M + G+ P+ T+ L A E+L + +G PD
Sbjct: 291 YCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPD 350
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
++TY +++ G CK+G E +E+LN+ I R +PN VT L + +
Sbjct: 351 IFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELAR 410
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P TFN++IQ LC A+ L M G P Y+ LI L
Sbjct: 411 VLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N+ A ++ + M G HP+ TY +L EA +L +++ G +V
Sbjct: 432 CLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNV 491
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY ++DGFCK R E E+ +E +G++ NVV TLI +
Sbjct: 492 VTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQ 551
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G P T+N+++ C G I KA ++ M +G P Y TLI L +
Sbjct: 552 MLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSK 608
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P+VTT+ IL A M+ + + GL PD T+T +M GF + G
Sbjct: 202 MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGN 261
Query: 67 SNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHI----------------PRTITFNN 109
N + + + + G + NV + +H G I P TFN+
Sbjct: 262 MNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNS 321
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC +G + AL +L +M + G P Y++LI
Sbjct: 322 LVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLI 358
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++ D M G NV TY L EA +++ + +GLKPD
Sbjct: 501 FCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPD 560
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHIPR 103
+TY +++ FC+ G + +++ G P+ VT L V + R
Sbjct: 561 KFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLR 620
Query: 104 TI----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ T+N VI+AL + +A+ L M E G P Y + + L
Sbjct: 621 TVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGL 676
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 43/175 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D +A ++ M NG P+ TY L A +L V+ G+
Sbjct: 571 FCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLA 630
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY V+ + R++E + L E +E+G P+ V T+ V
Sbjct: 631 PQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAV------------------TYKVV 672
Query: 111 IQALC-GVGKIDKALLLLFLMYEHGKIP-------------SRTLYDTLIKKLDQ 151
+ LC G G I +A+ L M + G +P + ++ DTLIK +++
Sbjct: 673 FRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNR 727
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLN-EAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
GLK D +TY +++ G +++E++N + RG+ P+V T
Sbjct: 171 GLKLDAFTYNFLLNVLVD-GNKLKLVEIVNSRMVSRGIKPDVTT---------------- 213
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
FN +I+ALC +I A+L++ M +G P + TL++
Sbjct: 214 --FNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQ 254
>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Glycine max]
Length = 875
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-------------ILEAYEMLMNVKNDGLK 48
YC++ FEA+ V+ M NG PN TYT LEA EML + +
Sbjct: 408 YCSRGKVFEAKSVLHEMIRNGCQPN--TYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQ 465
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-----NVVTLIH-LHNVIDIGHIP 102
PD T V++G C+ G ++ E+++E G T + +LI+ +HNV + +P
Sbjct: 466 PDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNC--LP 523
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
IT+ +I LC VG++++A M P YDT I +Q
Sbjct: 524 DGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQ 573
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A +V+ M NG + TY I E Y + +K G+ PD
Sbjct: 570 FCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPD 629
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ TY ++ C+ G++ + + LL+E +++G++PNV +
Sbjct: 630 ICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSF 668
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 35/164 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDV 51
C EA+K M P+ TY I A+ +L +++ +G +
Sbjct: 536 CKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTL 595
Query: 52 YTYTAVMDGFCKVGRSNEVME---LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
TY A++ G +G +N++ E L +E E+G++P++ T +N
Sbjct: 596 QTYNALILG---LGSNNQIFEIYGLKDEMKEKGISPDICT------------------YN 634
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N+I LC GK A+ LL M + G P+ + + LIK +
Sbjct: 635 NIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKS 678
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 20/144 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
C + +A +++ M+ NG + + NV N PD TYT +++G C
Sbjct: 479 CRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSN--CLPDGITYTTLINGLC 536
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
KVGR E + E + + + P+ ++T++ I + C GKI
Sbjct: 537 KVGRLEEAKKKFIEMLAKNLRPD------------------SVTYDTFIWSFCKQGKISS 578
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLI 146
A +L M +G + Y+ LI
Sbjct: 579 AFRVLKDMERNGCSKTLQTYNALI 602
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
+C +AR +++ M G ++ Y I LEA +L + G++P+
Sbjct: 303 FCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPN 362
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
YTY +MDG C+ ++ L++ + GV P+ V TL+H LH
Sbjct: 363 AYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLH 422
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+I G P T T N ++ +L G+ +A +L M E
Sbjct: 423 EMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNE 461
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 6 NDFFEARKVID-YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
+D AR Y F+ H + A ++ + G P+ +T ++ G C+
Sbjct: 139 SDMLAARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRA 198
Query: 65 GRSNEVMELLNEAIERGVTPNVV--TLIH--------------LHNVIDIGHIPRTITFN 108
G + +EL+N + VV TL+ + + ++G +P +TFN
Sbjct: 199 GLVKQALELVNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFN 258
Query: 109 NVIQALCGVGKIDKA 123
+ I ALC GK+ +A
Sbjct: 259 SRISALCRAGKVMEA 273
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKND---GL 47
+C + EA ++++ M + G P+V T+ ++EA + +++ D GL
Sbjct: 229 FCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEASRIFRDMQMDAELGL 288
Query: 48 -KPDVYTYTAVMDGFCKVGRSNEVMELLN--------EAIE------RGVTPNVVTL--- 89
+P+V T+ ++ GFCK G + L+ +++E G+ N L
Sbjct: 289 PRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEAR 348
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ L ++ G P T+N ++ LC + A L+ LM +G P Y TL+
Sbjct: 349 LVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLL 405
>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
gi|194705268|gb|ACF86718.1| unknown [Zea mays]
gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
Length = 504
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D M NG P++ TY +L A +L + + G +P+V +T ++DG
Sbjct: 305 QLLDEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGL 364
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHNVIDIGHIPRT 104
+ G +E +++G P+VV +++ G +P
Sbjct: 365 GRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDMLMRGQLPNV 424
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++IQ LC VG+ DKA +L M HG P+ ++Y +L+++L
Sbjct: 425 YTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLVRRL 469
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V + M GY P+V TY ++ + +++L + +GL PD++TY ++
Sbjct: 271 VHEKMILEGYSPDVLTYNVVLRAKYMLGKLDQFHQLLDEMGKNGLTPDLHTYNLLLHVLG 330
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID--------------------IGHIP 102
K + + LLN + G PNV +H N+ID G P
Sbjct: 331 KGDKPLAALNLLNYMSDVGCRPNV---LHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDP 387
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + +I + G+ ++A M G++P+ Y+++I+ L
Sbjct: 388 DVVCYTVMIASYVAAGEFEEAQRFFDDMLMRGQLPNVYTYNSMIQGL 434
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 21/149 (14%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKN----DGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
F N ++ + T +E Y ++ V +G PDV TY V+ +G+ ++ +LL
Sbjct: 248 FRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVLRAKYMLGKLDQFHQLL 307
Query: 75 NEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGV 117
+E + G+TP++ T L+H L+ + D+G P + F N+I L
Sbjct: 308 DEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLGRA 367
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G ++ M + G P Y +I
Sbjct: 368 GNLEACRYFFDEMMKKGCDPDVVCYTVMI 396
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + D A K M P+V TYT ++EA ++ + GL+PD
Sbjct: 784 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPD 843
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
+ T+T +M+G+CK G + + N I+ G +PNVVT LH
Sbjct: 844 IITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 903
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ IG P T+N+++ LC G I++A+ L+ G Y TL+
Sbjct: 904 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 956
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G P+ YT L A + + + + PDV
Sbjct: 750 CRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDV 809
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TYTA++ GFC++G E +L +E + RG+ P+++T L N
Sbjct: 810 LTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNH 869
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+ +I LC G +D A LL M++ G P+ Y++++ L
Sbjct: 870 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 924
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A +++ M+ G PN+ TY I EA +++ + GL D
Sbjct: 890 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 949
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------IHLHNVIDIGH----- 100
TYT +MD +CK G ++ E+L E + +G+ P +VT LH +++ G
Sbjct: 950 VTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 1009
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P TFN +++ C + A + M G P Y+ L+K
Sbjct: 1010 MLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVK 1062
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
YC + + K+I+ M G PN TY + EA E + G+ PD
Sbjct: 714 YCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPD 773
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
YT ++DGFCK G + E R +TP+V+T + ++++ G +
Sbjct: 774 TIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFH 833
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P ITF ++ C G I A + M + G P+ Y TLI L ++
Sbjct: 834 EMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 892
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 26 NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
NV +Y I+ EA+ +L+ ++ G PDV +Y+ V++G+C+ G ++V +L+
Sbjct: 668 NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLI 727
Query: 75 NEAIERGVTPNVVT---LIHL--------------HNVIDIGHIPRTITFNNVIQALCGV 117
+ ++G+ PN T +I L +I G +P TI + ++ C
Sbjct: 728 EKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKR 787
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G I A + M+ P Y +I Q
Sbjct: 788 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 821
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTI------------LEAYEMLMNVKNDGLKPDVYTYTAV 57
EARKV + M + G +V + + A + G+ +V +Y V
Sbjct: 616 EARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIV 675
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ C++GR NE LL +G TP+V I+++ VI C
Sbjct: 676 IHFVCQLGRINEAHHLLLLMELKGYTPDV------------------ISYSTVINGYCRF 717
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++DK L+ M + G P+ Y ++I
Sbjct: 718 GELDKVWKLIEKMKQKGLKPNSYTYGSII 746
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVK----------NDGLKPD 50
+C + K++++M G PN TT+ L + Y + N+K + G++PD
Sbjct: 994 FCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPD 1053
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY ++ G C E L E +G + +V T
Sbjct: 1054 GKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVST 1091
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N EA KV+ M G PN+++Y IL EA +L + L PD
Sbjct: 351 YCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPD 410
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY+ +M G C+VGR E + L E G+ P++ + ++ +
Sbjct: 411 TVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDL------------------MAYSIL 452
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C G +D+AL LL M+E P+ LY LI+ +
Sbjct: 453 LDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGM 491
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +V M N PNV TY + EA E L + + G+ PDV
Sbjct: 212 CKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDV 271
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY ++ GFC +G+ NE L E + R V P+ VT L
Sbjct: 272 VTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSET 331
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P T+N ++ C ++D+A+ +L +M G P+ + Y+ LI
Sbjct: 332 MTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILI 383
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA++++ M + P+ TY+ L EA + + + GL PD
Sbjct: 386 YCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPD 445
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHI-------- 101
+ Y+ ++DGFCK G +E ++LL E ER + PN++ I + + G +
Sbjct: 446 LMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFS 505
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P T+N +I+ L G D+A M + G +P Y+ +I+ Q
Sbjct: 506 KLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQ 563
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 63/209 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + A V+ MF G P+ T+ L EA + + G +P
Sbjct: 140 CLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEP 199
Query: 50 DVYTYTAVMDGFCKVGRS-----------------------------------NEVMELL 74
+V +Y V++G CK G + NE +E L
Sbjct: 200 NVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFL 259
Query: 75 NEAIERGVTPNVVTL-IHLHNVIDIGHI----------------PRTITFNNVIQALCGV 117
+E ++RG+ P+VVT LH +G + P T+TFN ++ LC
Sbjct: 260 SEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKE 319
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + +A + M E G P+ Y+ L+
Sbjct: 320 GMVSEARCVSETMTEKGAEPNAYTYNALM 348
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+++ + +G P++ TY ++ EAYE +++DG PD +Y ++
Sbjct: 500 AKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQ 559
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
GF + S+ ++L++E + + + + T
Sbjct: 560 GFLQNQDSSTAIQLIDEMVGKRFSADSSTF 589
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------- 96
+P V + + K + + + L N+ GVT NV +L L N +
Sbjct: 93 RPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVS 152
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G P ITFN +I LC GKI +A+ L M G P+ Y+T+I L
Sbjct: 153 VMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGL 211
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ +VY+ +++ C++ + + ++ + + G+ P+ +T L N
Sbjct: 126 GVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEA 185
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ GH P I++N VI LC G A+ + M ++ P+ Y+T+I
Sbjct: 186 VGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDS 245
Query: 149 L 149
L
Sbjct: 246 L 246
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F EA +D M D G PN+ TY L +A E+ N+++ G+KP
Sbjct: 376 CKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTA 435
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----TLIHL-------------HN 94
YTY +D + K G S +E + +G+ PN+V +L L +
Sbjct: 436 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYG 495
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ DIG +P ++T+N +++ VG+ID+A+ LL M E+ P + ++LI L
Sbjct: 496 LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTL 550
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY + EA K++ M +N P+V L EA++M M +K LKP
Sbjct: 514 CYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 573
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K G+ E +EL +++G PN TITFN
Sbjct: 574 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPN------------------TITFNT 615
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ LC ++ AL +LF M + G +P Y+T+I
Sbjct: 616 LFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 652
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV T+TI EAYE+L + ++G PDV TYT ++D C + +
Sbjct: 255 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 314
Query: 71 MELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQA 113
E+ + P+ VT I L + GH+P +TF ++ A
Sbjct: 315 KEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDA 374
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G +A L +M + G +P+ Y+TLI
Sbjct: 375 LCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLI 407
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTIL------EAYEMLMNVKNDGLKPD 50
Y D A + + M G PN+ + Y++ EA ++ +K+ GL PD
Sbjct: 445 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 504
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
TY +M + KVG +E ++LL+E +E P+V+ + L N +
Sbjct: 505 SVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFM 564
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ P +T+N ++ L GKI +A+ L M + G P+ ++TL
Sbjct: 565 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 616
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 30/154 (19%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
+EA+++ + M D G PN Y IL A + + +G++PD+ TY+
Sbjct: 909 LYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 968
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
++D C VGR +E + E E G+ P+VV +N +I L
Sbjct: 969 LVDCLCMVGRVDEGLHYFRELKESGLNPDVV------------------CYNLIINGLGK 1010
Query: 117 VGKIDKALLLLFLMYE-HGKIPSRTLYDTLIKKL 149
++++AL+L M + G P Y++LI L
Sbjct: 1011 FHRLEEALVLFNEMKKSRGITPDLYTYNSLILNL 1044
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V M +G+ P++ TY+ L +L ++ GLKP+VYT+T +
Sbjct: 208 EAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICI 267
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ G+ NE E+L + G P+VV T+ +I ALC
Sbjct: 268 RVLGRAGKINEAYEILKRMDDEGCGPDVV------------------TYTVLIDALCTAR 309
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
K+D A + M P R Y TL+ +
Sbjct: 310 KLDCAKEVFAKMKTGRHKPDRVTYITLLDRFS 341
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 20 DNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D G P + TY +L A ++ + VKN G PDV TY ++D + K G+ +
Sbjct: 780 DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKID 839
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
E+ E+ E PN TIT N VI L G +D AL L +
Sbjct: 840 ELFEIYKEMSAHECEPN------------------TITHNIVISGLVKAGNVDDALDLYY 881
Query: 129 -LMYEHGKIPSRTLYDTLIKKLDQQ 152
LM + P+ Y LI L +
Sbjct: 882 DLMSDRDFSPTACTYGPLIDGLSKS 906
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
D M D + P TY L EA ++ + + G +P+ Y +++GF K
Sbjct: 882 DLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKA 941
Query: 65 GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
G ++ L ++ GV P++ T++ ++ LC VG++D+ L
Sbjct: 942 GEADAACALFKRMVKEGVRPDLK------------------TYSVLVDCLCMVGRVDEGL 983
Query: 125 LLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ E G P Y+ +I L +
Sbjct: 984 HYFRELKESGLNPDVVCYNLIINGLGK 1010
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + M G PN T+ L A +ML + + G PDV+TY ++
Sbjct: 593 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 652
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
G K G+ E M ++ +++ V P+ VTL L
Sbjct: 653 FGLVKNGQVKEAMCFFHQ-MKKLVYPDFVTLCTL 685
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 30/157 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMN--VKNDGLK 48
C C E + ++G +P+V Y + LE +L N K+ G+
Sbjct: 972 CLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGIT 1031
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD+YTY +++ G E ++ NE G+ PNV TFN
Sbjct: 1032 PDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV------------------FTFN 1073
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+I+ GK + A + M G P+ Y+ L
Sbjct: 1074 ALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A+ + M G N TYT+L + +EM ++ G+ P++
Sbjct: 209 CKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNL 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI 98
+TY VM+ CK GR+ + ++ +E ERGV+ N+VT L + V+D
Sbjct: 269 HTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQ 328
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I CGV K+ KAL L + G PS Y+ L+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILV 380
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D A KV+ M + G P+ TYTIL +A ++ +++ GL PD
Sbjct: 383 FCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPD 442
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+TY+ ++ GFC GR NE L +E+ PN + +N +
Sbjct: 443 VHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPN------------------EVIYNTM 484
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C G +AL L M E P+ Y +I+ L
Sbjct: 485 VLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVL 523
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A KV D M + G N+ TY L EA E++ +K+DG+ P++
Sbjct: 279 CKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNL 338
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++DGFC V + + + L + RG++P++V T+N ++
Sbjct: 339 ITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLV------------------TYNILV 380
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G A ++ M E G PS+ Y LI
Sbjct: 381 SGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILI 415
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I +++++L+ ++ G P+V YT ++DG CK G + +L E + G+ N T
Sbjct: 179 IEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTV 238
Query: 89 LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LIH + + G P T+N V+ LC G+ A + M E G
Sbjct: 239 LIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERG 298
Query: 135 KIPSRTLYDTLIKKL 149
+ Y+TLI L
Sbjct: 299 VSCNIVTYNTLIGGL 313
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVY++ V+ G C+ G + +LL E E G +PNVV +
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVV------------------IYTT 203
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I C G+I+KA L F M + G + + Y LI L
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGL 243
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G+ P++ Y ++ EA E+L + +DG+ PD TYT+++ + GR
Sbjct: 505 MLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGR 564
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIHLH--------------NVIDIGHIPRTITFNN 109
+ E+ E + +G+TP+VVT LIH H + + G +P IT+N+
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+I LC V ++D+A M E G P++ Y LI +
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINE 663
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
YC + +A + D + P + TY T+L+ A ++ + + N+G+ PD
Sbjct: 384 YCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPD 443
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-------TPNVVTLIHL----------H 93
+ TYT +++G CK+G + E +E + G+ +V + L
Sbjct: 444 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQE 503
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P I +N V+ LC +G +++A LL M G IP Y ++I
Sbjct: 504 EMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSII 556
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K +F +A+ +I M G + TY L EA + + G P V T
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----LHNVI---------- 96
Y + + G CK+GR ++ M+ L++ + + P+VV TLI+ L N++
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I P +T+N ++ LC G+++ A L M G P Y L+
Sbjct: 402 SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+ + G+KP + TY ++D +CK G+ + ++LL+E RG PN VT L
Sbjct: 217 KAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLI 276
Query: 94 NVID-----------IGHIPRT------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N + IG + +T T+N +I G + +AL L M G
Sbjct: 277 NGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGAS 336
Query: 137 PSRTLYDTLIKKL 149
P+ Y++ I L
Sbjct: 337 PTVATYNSFIYGL 349
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G PNV TY L +AY + G+ P+ Y+YT +++ C +G
Sbjct: 610 MQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGN 669
Query: 67 SNEVMELLNEAIERGVTPNVVT 88
E + L + ++RGV P+ T
Sbjct: 670 WQEALSLYKQMLDRGVQPDSCT 691
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P +T+N ++ + C GK+ + L LL M G P+ Y+ LI L ++
Sbjct: 227 EFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKK 282
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYM-FDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C + EA + I+ M G+ P+ T+ +L A E++ + +G P
Sbjct: 275 FCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDP 334
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+YTY +++ G CK+G +E +++LN+ IER +PN T+T+N
Sbjct: 335 DIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPN------------------TVTYNT 376
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC ++++A L ++ G +P Y++LI+ L
Sbjct: 377 IISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGL 416
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +N EA K+ + G P+V TY L A E+ +K G PD
Sbjct: 382 CKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDE 441
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------------HLHNV 95
+TY ++D C G+ E + LL E G NV+ TLI + +
Sbjct: 442 FTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQ 501
Query: 96 IDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ + R ++T+N +I LC ++++A L+ M G P + Y++L+
Sbjct: 502 MELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLL 553
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++ D M G N TY L EA +++ + +GL+PD
Sbjct: 486 FCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPD 545
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHIPR 103
+TY +++ FCK G + +++ G P++VT L V + R
Sbjct: 546 KFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLR 605
Query: 104 TI----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
TI +N VIQAL + +A+ L M E + P Y + + L Q
Sbjct: 606 TIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQ 663
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 64/196 (32%)
Query: 18 MFDNGYHPNVTTYTIL-----EAYE-----MLMNVKND-GLKPDVYTYTAVMD------- 59
M G P+V+T+ IL A++ +LM D GL PD T+T +M
Sbjct: 186 MVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGN 245
Query: 60 ----------------------------GFCKVGRSNEVMELLNE-AIERGVTPNVVTLI 90
GFCK GR E + + E ++ G P+ T
Sbjct: 246 LDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFN 305
Query: 91 HLHNVID-IGHI----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L N + GH+ P T+N++I LC +G++D+A+ +L M E
Sbjct: 306 MLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIER 365
Query: 134 GKIPSRTLYDTLIKKL 149
P+ Y+T+I L
Sbjct: 366 DCSPNTVTYNTIISTL 381
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 58 MDGFCKVGRSNEVMELLNE-AIERGVTPN------------------VVTLIHLHNVIDI 98
++ + G NE+++ ++ +E GV N +V + H N++
Sbjct: 131 IESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAH-SNMVSR 189
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P TFN +I+ALC +I A+LL+ M + G +P + T+++
Sbjct: 190 GIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQ 238
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN+ TYTI +AY +L ++++G PDV TYT ++D C G+ ++
Sbjct: 257 GLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKA 316
Query: 71 MELLNEAIERGVTPNVVTLIHL----HNVIDI-------------GHIPRTITFNNVIQA 113
EL + P++VT I L N D+ G+ P +T+ +++A
Sbjct: 317 KELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEA 376
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK+D+A +L +M G +P+ Y+TLI L
Sbjct: 377 LCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGL 412
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++D M G PN+ TY L EA E+ N+++ G+ P
Sbjct: 378 CKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTA 437
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
Y+Y +D + K+G + ++ + +RG+ P++ L+++ ++G I
Sbjct: 438 YSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFND 497
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++T+N +++ G+IDKA LL M G P + ++LI L
Sbjct: 498 IHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTL 552
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + +A+K+ D + G HP +Y L A ++ + +KN G P+
Sbjct: 763 CKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPN 822
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++TY ++D K R +E+ EL NE + RG PN++T HN+I
Sbjct: 823 IFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIIT----HNII-------------- 864
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I AL I+KAL L + + P+ Y LI L
Sbjct: 865 ISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGL 903
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 21 NGYHPNVTTYTIL------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
N Y N Y +L EA ++ + ++GLKP + TY+A+M + + +M+LL
Sbjct: 191 NAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLL 250
Query: 75 NEAIERGVTPNVVTLI-----------------HLHNVIDIGHIPRTITFNNVIQALCGV 117
E G+ PN+ T L + D G P +T+ +I ALC
Sbjct: 251 EEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAA 310
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GK+DKA L M P Y TL+ K
Sbjct: 311 GKLDKAKELYTKMRASSHKPDLVTYITLMSKF 342
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I EA ++ ++ N GL PD TY +M + K G+ ++ +LL E + G P+++ +
Sbjct: 488 IREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNS 547
Query: 92 LHNVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L + + D+ P +T+N +I L GK+ KAL L M E G
Sbjct: 548 LIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG 607
Query: 135 KIPSRTLYDTLI 146
P+ ++ L+
Sbjct: 608 CPPNTVTFNALL 619
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY +A K++ M G P++ L EA++M +K+ L P
Sbjct: 516 CYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAP 575
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K G+ + ++L E G PN T+TFN
Sbjct: 576 TVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPN------------------TVTFNA 617
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ LC +D AL + M P Y+T+I L ++
Sbjct: 618 LLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKE 660
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 28/159 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P++ +YTIL +A +K GL PD +Y +++G K R
Sbjct: 954 MIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRR 1013
Query: 67 SNEVMELLNEAIERGVTPNVVT----LIHLHN--VID-----------IGHIPRTITFNN 109
E + L +E RG++P + T ++H N ++D +G P T+N
Sbjct: 1014 LEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNA 1073
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+I+ G D+A + M G P+ + L K
Sbjct: 1074 LIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPNK 1112
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M + G P + TY L +A +M ++ GL+P+V+TY A++
Sbjct: 1016 EALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALI 1075
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
G K G + + + + G +PN T L N
Sbjct: 1076 RGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPN 1111
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + EA + + M + G+ PNV Y L EA + ++ +G P+
Sbjct: 329 YFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPN 388
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V TY A++DGF K G E+ N+ + G PNVV + NV+ +
Sbjct: 389 VSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIE 448
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+TFN I+ LC G+++ A+ L M ++G P+ Y+ ++ L ++
Sbjct: 449 KMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKE 507
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 24/151 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKNDG-----LKPDVYTYTA 56
C N A K++ M + G P+V +YT ++ + L V+ +P+V Y A
Sbjct: 195 CKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNA 254
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
+++GFC+ + EV LL + +E+G+ PNV IT++ VI +L G
Sbjct: 255 LINGFCREYKVKEVFLLLGQMVEKGIDPNV------------------ITYSTVISSLSG 296
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+G ++ AL + M+ G P+ + +L+K
Sbjct: 297 IGNVELALAVWAKMFVRGCSPNVYTFTSLMK 327
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C + E ++ M + G PNV TY T++ + + NV+ G P+
Sbjct: 259 FCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPN 318
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYT+T++M G+ GR E + + N E G PNVV +N +
Sbjct: 319 VYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVV------------------AYNTL 360
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC GK+ +A+ + M +G P+ + Y LI
Sbjct: 361 IHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALI 396
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C + F +A +I+ M + PN T+ T ++ A + ++ G P++
Sbjct: 435 CRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNI 494
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY V+DG K R E +EL+ E E+G+ N+V T+N +
Sbjct: 495 KTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLV------------------TYNTIF 536
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
C VGK ++AL LL M G P Y+TL
Sbjct: 537 GGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTL 570
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEA------YEML----MNVKNDGLKPDVYTYTAVM 58
+A K+ + + G P V Y +L+A ++M+ N+K DG +P+VYTY ++
Sbjct: 132 QALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILL 191
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHI-----------PRTIT 106
CK R + +LL E +G P+VV+ + ++ +G + P
Sbjct: 192 KALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSV 251
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+N +I C K+ + LLL M E G P+ Y T+I L
Sbjct: 252 YNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLS 295
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 30/143 (20%)
Query: 22 GYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN+ TY I EA E++ ++ G++ ++ TY + GFC VG+ E
Sbjct: 489 GCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEA 548
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
++LL + + GV P+ IT+N + A C GK+ A+ LL +
Sbjct: 549 LKLLGKMLVGGVKPD------------------AITYNTLTYAYCMQGKVKTAIQLLDKL 590
Query: 131 YEHGK-IPSRTLYDTLIKKLDQQ 152
GK +P Y +L+ + Q
Sbjct: 591 SAGGKWVPEVAAYTSLLWGICNQ 613
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN-----DGLK------P 49
+CN F EA K++ M G P+ TY T+ AY M VK D L P
Sbjct: 539 FCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVP 598
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+V YT+++ G C E + L++ + G+ N T
Sbjct: 599 EVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAAT 637
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 17/131 (12%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----- 92
+L +K +G+ + V++ + +VG + + +++ E G P V HL
Sbjct: 101 LLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAML 160
Query: 93 ------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
N+ G P T+N +++ALC ++D A LL M G P
Sbjct: 161 SENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVV 220
Query: 141 LYDTLIKKLDQ 151
Y T+I + +
Sbjct: 221 SYTTVISSMSK 231
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A V+ M + G P+V TY ++EA ++ + G KPD
Sbjct: 195 FCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPD 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V++Y+ +++G+CK R +E +L NE I +G TPN +++N +
Sbjct: 255 VFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPN------------------NVSYNTL 296
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I LC +G++ +A L M+ +G +P+ Y L+ +Q
Sbjct: 297 IHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQ 338
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + YM P + TYT L EA +L + + + P+V T+ ++
Sbjct: 133 EALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLV 192
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI----GHI 101
D FCK G+ +L E GV P+VVT ++ + D+ G
Sbjct: 193 DTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCK 252
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +++ +I C +ID+A L M G P+ Y+TLI L Q
Sbjct: 253 PDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQ 302
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C V+ G P + T+T L +A E+ ++ G +P
Sbjct: 19 CFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQP 78
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDIG 99
D YTYT +++G CK+G + L + E G NVV TLIH ++ +DI
Sbjct: 79 DDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIF 138
Query: 100 HI-------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ ++IQ LC + +A LL M +P+ ++ L+
Sbjct: 139 SYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLV 192
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + M + G NV TY+ L EA ++ +K + P ++TYT+++
Sbjct: 99 AAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQ 158
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C R E LLNE + PNVV TFN ++ C GK
Sbjct: 159 GLCNFSRWKEASALLNEMTSLNIMPNVV------------------TFNVLVDTFCKEGK 200
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ A +L M E G P Y++L+
Sbjct: 201 VLAAEGVLKTMTEMGVEPDVVTYNSLM 227
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+ + M NG PN+ TY IL +A+ + +++ LKP++
Sbjct: 301 CQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNL 360
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +++ CK G + EL +E G+ PNV + +I
Sbjct: 361 VMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQ------------------IYTTII 402
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G +D+AL M + G P Y+ +I+ Q
Sbjct: 403 NGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQ 442
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR++ +F G PNV YT + EA E N+++DG PD
Sbjct: 371 CKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDE 430
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
++Y ++ GF + + + L+ E +RG + T
Sbjct: 431 FSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
GL P+ T +++ FC++ R + +L + I+ G+ P +VT L N
Sbjct: 5 GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ G P T+ +I LC +G+ A L M E G + Y TLI
Sbjct: 65 VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124
Query: 149 L 149
L
Sbjct: 125 L 125
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M + G PN TYT L A+E++ +K +G P+
Sbjct: 332 YCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPN 391
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
+YTY A++ GFCK G+ E ++L A +G+ + VT
Sbjct: 392 IYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFK 451
Query: 90 ----------IHLHNVI---------------------DIGHIPRTITFNNVIQALCGVG 118
IH + I IG +P T+ ++I C +G
Sbjct: 452 QMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLG 511
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K+ AL + M +HG +P Y LI L
Sbjct: 512 KLTSALKVFERMVQHGCLPDSITYGALISSL 542
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C + +A V++ M G PNV T+T L A+ + + VK+ KP+
Sbjct: 262 CERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPN 321
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH-------------N 94
V+TYT ++ G+CK G+ LL +E+G+ PN TLIH H N
Sbjct: 322 VHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMN 381
Query: 95 VIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G +P T+N +I C GKI +A +L + G + Y LI + +Q
Sbjct: 382 KMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQ 440
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M+ G+ + T T++ ++ + G P++
Sbjct: 192 CREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNM 251
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTI----- 105
Y+A +DG C+ G + +L E + +G+ PNV T L + IG + R
Sbjct: 252 VNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLK 311
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ +I C GK+ +A +LL M E G P+ Y TLI
Sbjct: 312 LVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
+C K EA KV+ G H + TYTIL A ++ + PD
Sbjct: 402 FCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPD 461
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
++TYT ++ +C+ + + +L ++ + G+ P T +
Sbjct: 462 IHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFE 521
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ G +P +IT+ +I +LC ++++A L M + +P
Sbjct: 522 RMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVP 565
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA V+D M G PN+ TY ++ +A E+L + + G +PD+
Sbjct: 198 CKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDI 257
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+YT V+ G C R ++V L E +++ PN VT L+ L
Sbjct: 258 VSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQ 317
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T N VI A+C G++D A L M +G P Y T+++ L
Sbjct: 318 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGL 372
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 28/163 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P+V TYT+L EA +L ++ G P++ TY +++G C+ GR
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237
Query: 67 SNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNN 109
++ E+LN G P++V+ + ++D +P +TF+
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ C G +++A+ +L M +HG P+ TL + +I + +Q
Sbjct: 298 LVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQ 340
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V+ M +G PN T I+ +AY+ L N+ G PD
Sbjct: 302 FCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 361
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YT V+ G C+ GR ELL E + + PN +TFN
Sbjct: 362 TISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN------------------EVTFNTF 403
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G I++A+ L+ LM E+G Y+ L+
Sbjct: 404 ICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALV 439
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----- 88
EA E++ + G P++ T+ ++DG K S E +ELL+ + +GV+ + +T
Sbjct: 517 EAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVV 576
Query: 89 ------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ LH V D+G P+ +N ++ ALC + D+A+ M +G +
Sbjct: 577 DVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCM 636
Query: 137 PSRTLYDTLIKKLDQQ 152
P+ + Y LI+ L +
Sbjct: 637 PNESTYIILIEGLAHE 652
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A K+I+ M + G + TY L A E+ N+ +P+
Sbjct: 408 CQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNT 464
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C R + ELL E I++ N V TFN ++
Sbjct: 465 ITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAV------------------TFNVLV 506
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G +++A+ L+ M EHG P+ ++TL+
Sbjct: 507 SFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLL 541
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++++ M D G+ PNV TY L EA ++ + G PD
Sbjct: 98 CRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDG 157
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
Y ++DGF K G E L E +E+G P V T L +
Sbjct: 158 VVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKD 217
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P TFNN++ C +G + +A L M G P Y+TLI+ +
Sbjct: 218 MLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGM 272
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F EAR V M G PNV +Y+IL EA E+L + + G +P+V
Sbjct: 63 CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY +++ G CK+G+ E ++L + + RG P+ V LI
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G IP T+N+++ G+ + L M G +P+ ++ L+
Sbjct: 183 MLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLL 234
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+ K +F + + M G PN+ T+ ++EA+ + + +++ G PD
Sbjct: 202 FSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPD 261
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIH----LH 93
V +Y ++ G C G+ +E LL E I GV P++V+ L H +
Sbjct: 262 VVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFY 321
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +++ +I LC GK+ A ++ M +G P + L+
Sbjct: 322 EIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLV 374
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 29/146 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PN TY L EA + + G P+V++Y+ ++ G C+ +
Sbjct: 43 MLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+E ELLNE +ID GH P +T+ +++ LC +GK+ +A+ L
Sbjct: 103 VDEAAELLNE------------------MIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDL 144
Query: 127 LFLMYEHGKIPSRTLYDTLIKKLDQQ 152
M G P +Y+ LI ++
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKK 170
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G P+ Y +L EAY + + G P V
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVI-- 96
+TY +++ GF + G V L + + +G PN+ T ++ H +
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE 252
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+G P +++N +I+ +C GK +A LL M G P Y+ LI
Sbjct: 253 MRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILI 304
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+ K D EA ++ + M + G P V TY ++L + + ++ G P+
Sbjct: 167 FSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPN 226
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
++T+ ++DGFCK+G E L E G P+VV TLI L
Sbjct: 227 IFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLR 286
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +++N +I G +D A+ L + + + G P Y T+I L
Sbjct: 287 EMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCL 342
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C A V M NG P+ L E+ E+ + P
Sbjct: 341 CLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP 400
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
+ Y +M CK RS++V E+ +E ERG +P+V
Sbjct: 401 LIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDV 437
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +F +A K + M G PNV TYT + A+ ++ + G PD
Sbjct: 376 CKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDS 435
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIPRTI----- 105
TY ++DGFCK+GR +E +LL+E + +PN+ L N + D G + +T+
Sbjct: 436 VTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFE 495
Query: 106 -------TFN-----NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T + ++I LC G++D+A + M G P T Y+ LI L
Sbjct: 496 QSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL 551
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA KV+D M P TY IL A E+ + G +P+ YT+++
Sbjct: 278 EALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLI 337
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHI---------------- 101
GF K GR E L +E +E G P+V+T + + + G+
Sbjct: 338 HGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCK 397
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +IQ L +G++ A ++ M HG P Y L+
Sbjct: 398 PNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLL 442
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ M +G+ PN YT L EA + + G +PDV
Sbjct: 306 CKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDV 365
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
T+T ++DG CK G + + E + G PNVVT +
Sbjct: 366 ITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKG 425
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P ++T+ ++ C +G++D+A LL + + P+ LY +L+ L
Sbjct: 426 MIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGL 480
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 31/160 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKP 49
C EA ++ M G P+ TTY IL A+ +L +++ G P
Sbjct: 517 CKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLP 576
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D TYT + G CK+G + +++L EA RG +VV +
Sbjct: 577 DAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV------------------AYTA 618
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC G++D+A+ L M G P Y +I L
Sbjct: 619 LCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGL 658
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 33/178 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A K+++ G++ +V YT L A + + G PD
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDA 648
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGH---- 100
Y +++G KV + + + +E I +G P V T L H NV + H
Sbjct: 649 AAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFES 708
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP----SRTLYDTLIK 147
+ + ++ +I C K+D AL L M G +P S +L+D L++
Sbjct: 709 MLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA E+ ++ G PD Y ++DG K G + E +++L+ + +
Sbjct: 241 VKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC--------- 291
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P +T+ ++ +LC G +++A L +M G P+ +Y +LI
Sbjct: 292 ---------VPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLI 337
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 29/174 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+ ++ + + + M G PN ++ IL +A +K KPD++T
Sbjct: 132 EKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHT 191
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPN--------VVTLIHLHNVID-------- 97
+ ++D CK G + E+ +E + G P V TL+ V +
Sbjct: 192 FLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQM 251
Query: 98 --IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P I +N +I L G +AL +L M +P+ Y L+ L
Sbjct: 252 EKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSL 305
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-LKPDVYTYTAV 57
+A K D M G P V TYT L EA+ ++ G L V Y A+
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDAL 725
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ GFCK + + ++L + I RG P VT L F+ ++++
Sbjct: 726 IHGFCKALKVDAALKLFEDMISRGNVPTAVTSASL--------------FDGLVRS---- 767
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GK +KA LL M G P + ++ L
Sbjct: 768 GKTEKAQELLQEMAAGGSPPHAATFTAILDGL 799
>gi|357120336|ref|XP_003561883.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62590-like [Brachypodium distachyon]
Length = 525
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 32/181 (17%)
Query: 1 CY----CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKND 45
CY C+ EAR +D+M D G P V +YT ILEA +++ ++ +
Sbjct: 151 CYISVLCDSQRLEEARGFLDHMVDEGVRPTVRSYTTILRGYCQQGKILEAEKLVDDMVDA 210
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNV--------- 95
G +PDV +Y+ +++G C V ++V +L E+ ++G TPN +T I++ +
Sbjct: 211 GCQPDVVSYSVLIEGLCSVREFDKVERILRESEDKGWTPNAITYNIYMSGLCRTGLLDDT 270
Query: 96 ---IDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+DI G +P T N + LC + +A+LLL E G Y+TL+ +
Sbjct: 271 FRQVDIMRSRGLLPTVETVNILFDCLCRDSRFSEAVLLLEHSEELGWHADVFCYNTLMGR 330
Query: 149 L 149
L
Sbjct: 331 L 331
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 29/162 (17%)
Query: 15 IDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
+D M G P V T IL EA +L + + G DV+ Y +M C
Sbjct: 274 VDIMRSRGLLPTVETVNILFDCLCRDSRFSEAVLLLEHSEELGWHADVFCYNTLMGRLCD 333
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLI---------HLHNVID-------IGHIPRTITF 107
+G V +LL + +++G+ P++ + H V + IG+ + F
Sbjct: 334 IGDFARVFKLLVDLLKKGIGPDMFSFTIAIRGLCGAGKHRVAECLIDNESIGY--DVVAF 391
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N +I C G + L MY P+ + LI L
Sbjct: 392 NTLIHGFCIAGDLRGVKLTYMNMYSRQISPNNYTHALLIDSL 433
Score = 41.6 bits (96), Expect = 0.097, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 26/165 (15%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL---------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
AR + +G P + +T L Y++ + + PD Y +
Sbjct: 97 ARAAFSSLIVSGLTPTASAFTALLKSYDSSLDAMYQVFLAMAAARCSPDAAVYNCYISVL 156
Query: 62 CKVGRSNEVMELLNEAIERGVTPNV---VTLIH--------------LHNVIDIGHIPRT 104
C R E L+ ++ GV P V T++ + +++D G P
Sbjct: 157 CDSQRLEEARGFLDHMVDEGVRPTVRSYTTILRGYCQQGKILEAEKLVDDMVDAGCQPDV 216
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++ +I+ LC V + DK +L + G P+ Y+ + L
Sbjct: 217 VSYSVLIEGLCSVREFDKVERILRESEDKGWTPNAITYNIYMSGL 261
>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
Length = 327
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ + + K++ M G PNV TY+IL EA +L +K GL PD Y
Sbjct: 107 NQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAY 166
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
+Y ++ FCK R + +E L I G P++V +N ++
Sbjct: 167 SYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIV------------------NYNTILS 208
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK D+AL + + E G P+ + Y+TL L
Sbjct: 209 TLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSAL 245
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 26 NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
++ TYTIL + ++L + GL+PD++ + AV+ G C+ G + E +
Sbjct: 24 SLVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFI 83
Query: 75 NEAIERGVTPNVVT-------LIH----------LHNVIDIGHIPRTITFNNVIQALCGV 117
+G P+V++ L++ + +++ G P +T++ +I +LC
Sbjct: 84 RYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRD 143
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK+++A+ LL +M E G P YD LI
Sbjct: 144 GKVEEAVSLLKVMKEQGLTPDAYSYDPLI 172
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
TYT +++ G ++VM+LL+E IE G+ P++ FN V+
Sbjct: 27 TYTILIEATILKGGVDDVMKLLDEMIESGLRPDM------------------FIFNAVVG 68
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+C G +D+A + + G P Y L++ L Q
Sbjct: 69 GMCREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQ 108
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 28/167 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + D+G+ PNV TY +I EA ++ GL P+V YTA++
Sbjct: 498 EAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALI 557
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
DGFCK+G N+ M L+NE I++G++ + V L +I+ G
Sbjct: 558 DGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQ 617
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ I C + + +A +L M G P +T+Y+ LI+K
Sbjct: 618 LDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRK 664
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
N+ A +++ M + G +V+ Y L EA +L + GL+P+ Y
Sbjct: 424 NNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIY 483
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVID 97
T +MD K G+ +E + LL++ ++ G PNVVT + H + + +
Sbjct: 484 TTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRE 543
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+G P + +I C +G ++KA+ L+ M + G + +Y +LI +Q
Sbjct: 544 LGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQ 598
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + EAR + M G P+V TY L E +++ ++ G DV
Sbjct: 211 CKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADV 270
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNV 95
TY A+++ F K GR + E +GV NVVT + L
Sbjct: 271 VTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQ 330
Query: 96 IDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G +P T+ +++ C G++D A++LL M G +P+ Y ++ L
Sbjct: 331 MRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGL 385
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA ++ ++ G+ P+ +TYT+++DG CK GR ++ + LL+E + +G+ PNVV
Sbjct: 321 VQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV---- 376
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ ++ LC GK+ +A +L LM G + LY TLI
Sbjct: 377 --------------TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLI 417
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
++ +FD PNV T+ I+ EA + + +K G PDV TY +++DG+
Sbjct: 187 LVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYG 246
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI-----------------GHIPRTI 105
K G EV +L++E + G +VVT L N G + +
Sbjct: 247 KCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVV 306
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TF+ + A C G + +A+ L M G +P+ Y +L+
Sbjct: 307 TFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLV 347
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA K+ M G PN TYT L +A +L + + GL P+
Sbjct: 315 FCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPN 374
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIHLH-------NVIDI-- 98
V TYT ++DG CK G+ E +L+ GV N TLIH H +D+
Sbjct: 375 VVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLN 434
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + +I LC K+D+A LL M G P+ +Y T++ L
Sbjct: 435 QMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDAL 490
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++D M G PNV TYT++ EA +L ++ G+K +
Sbjct: 351 CKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANE 410
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
YT ++ G S ++LLN+ +G+ +V TLI LH
Sbjct: 411 LLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHK 470
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T+ + ++ AL GK +A+ LL + + G P+ Y LI L
Sbjct: 471 MAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGL 525
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E K+ D G P++ Y L A+E++ ++ + PD TY +M
Sbjct: 709 ETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLM 768
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
G C +GR +E +L++E ERG+ P++VT L + +++ G
Sbjct: 769 RGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 828
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+N +IQ LC G+ D A ++ M E+G P + Y +LI+ L +
Sbjct: 829 PTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 879
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ A D M + G V TY +L EAYE++ + GL PD
Sbjct: 596 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 655
Query: 51 VYTYTAVMDGFCKVGRSNEVME-----------------------------------LLN 75
V+TY +++G CK G + +E L +
Sbjct: 656 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 715
Query: 76 EAIERGVTPNVV---TLIHLHNV---ID-----IGHI------PRTITFNNVIQALCGVG 118
EA+ RG+ P++V LI+ H+ ID +G + P +T+N +++ LC +G
Sbjct: 716 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 775
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+A L+ M E G P Y+TLI
Sbjct: 776 RVDEARKLIDEMTERGIQPDLVTYNTLI 803
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P+ YTY V+ G+CKVGR +E +++ +E + +G P +
Sbjct: 545 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK-----------------PEAV 587
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I C GK+D ALL M E G + Y+ L+ L
Sbjct: 588 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 631
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ TY V+ GFC GR ++++ E ERG G P T+
Sbjct: 511 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERG-----------------GIAPNQYTY 553
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
VI C VG++D+A+ + M G++ P +Y+ LI
Sbjct: 554 GTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 593
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTY-TIL----------EAYEMLMNVKNDG-LK 48
+C++ A ++ M + G PN TY T++ EA ++ + G +K
Sbjct: 524 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 583
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
P+ Y A++ G+C G+ + + + +ERGV V T L+H
Sbjct: 584 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 643
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + G P T+N +I C G + KAL + M G + Y LI L +
Sbjct: 644 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 703
Query: 152 Q 152
+
Sbjct: 704 K 704
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E K+ D G P++ Y L A+E++ ++ + PD TY +M
Sbjct: 714 ETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLM 773
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
G C +GR +E +L++E ERG+ P++VT L + +++ G
Sbjct: 774 RGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 833
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+N +IQ LC G+ D A ++ M E+G P + Y +LI+ L +
Sbjct: 834 PTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 884
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ A D M + G V TY +L EAYE++ + GL PD
Sbjct: 601 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 660
Query: 51 VYTYTAVMDGFCKVGRSNEVME-----------------------------------LLN 75
V+TY +++G CK G + +E L +
Sbjct: 661 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 720
Query: 76 EAIERGVTPNVV---TLIHLHNV---ID-----IGHI------PRTITFNNVIQALCGVG 118
EA+ RG+ P++V LI+ H+ ID +G + P +T+N +++ LC +G
Sbjct: 721 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 780
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+A L+ M E G P Y+TLI
Sbjct: 781 RVDEARKLIDEMTERGIQPDLVTYNTLI 808
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P+ YTY V+ G+CKVGR +E +++ +E + +G P +
Sbjct: 550 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK-----------------PEAV 592
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I C GK+D ALL M E G + Y+ L+ L
Sbjct: 593 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 636
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ TY V+ GFC GR ++++ E ERG G P T+
Sbjct: 516 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERG-----------------GIAPNQYTY 558
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
VI C VG++D+A+ + M G++ P +Y+ LI
Sbjct: 559 GTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 598
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTY-TIL----------EAYEMLMNVKNDG-LK 48
+C++ A ++ M + G PN TY T++ EA ++ + G +K
Sbjct: 529 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 588
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
P+ Y A++ G+C G+ + + + +ERGV V T L+H
Sbjct: 589 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 648
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + G P T+N +I C G + KAL + M G + Y LI L +
Sbjct: 649 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 708
Query: 152 Q 152
+
Sbjct: 709 K 709
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A ++ D M P+ TYT ++EA ++ + L+PD
Sbjct: 268 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 327
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYTA++DG+CK G+ E L N+ ++ G+TPN+VT LH
Sbjct: 328 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 387
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G T+N+++ LC G ID+A+ L+ M G P Y TL+
Sbjct: 388 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM 440
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +V+ M G P+ YT L AY + ++ + PD
Sbjct: 234 CKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDF 293
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN- 94
TYTAV+ G C+ GR E +L +E + + + P+ VT LHN
Sbjct: 294 ITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQ 353
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +T+ + LC G++D A LL M G + Y++L+ L
Sbjct: 354 MLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGL 408
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 31/159 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D A +++ M G N+ TY L +A +++ +++ G P
Sbjct: 374 CKCGEVD--TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHP 431
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D TYT +MD +CK ELL + ++R + P VV TFN
Sbjct: 432 DAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVV------------------TFNV 473
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ C G ++ LL M E G +P+ T Y++LIK+
Sbjct: 474 LMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQ 512
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
K+I+ M G PN TY + EA +L + ++G+ PD YT ++DGF
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI----------PRT 104
CK+G + L +E +R ++P+ +T L V++ + P
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ +I C GK+ +A L M + G P+ Y L L
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGL 373
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 29/153 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
+C + K++ +M + G PN TTY ++++ Y + N++ G+ PD
Sbjct: 478 FCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPD 537
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ G CK E L + + +G V ++N +
Sbjct: 538 GNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVS------------------SYNAL 579
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
I+ K +A L M G + R +Y+
Sbjct: 580 IKGFYKRKKFLEARELFEQMRREGLVADREIYN 612
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A +++ M D P V T+ +L + ++L + G+ P+
Sbjct: 443 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPN 502
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
TY +++ +C E+ +GV P+ T +N++ GH
Sbjct: 503 ATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNT----YNILIKGH 548
>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
Length = 558
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 40/184 (21%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + +A +V D M G P + +Y L EA ++L +K+ + P
Sbjct: 222 CLCKRGRVTKAMEVFDAMRALGCEPTIRSYNSLVGGLCYVGRLEEALDLLNKLKDSPMTP 281
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI-------- 101
D+YT+T V+DGFCKVGR+ E + ++AI G++P + T +N + GH
Sbjct: 282 DIYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTIFT----YNALLNGHCKEGNPLKA 337
Query: 102 ---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-KIPSRTLYDTL 145
P I+F V+ AL G+ A M G ++ R L DTL
Sbjct: 338 FALLMEMCGNDAACPPDKISFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRAL-DTL 396
Query: 146 IKKL 149
++ L
Sbjct: 397 VRGL 400
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C + EA+ ID M G+ P+V T++ + +A E+ ++ G +P
Sbjct: 187 CLCRQGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVFDAMRALGCEP 246
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
+ +Y +++ G C VGR E ++LLN+ + +TP++ T +
Sbjct: 247 TIRSYNSLVGGLCYVGRLEEALDLLNKLKDSPMTPDIYTFTIVLDGFCKVGRTEEATAIF 306
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
H+ I +G P T+N ++ C G KA LL M
Sbjct: 307 HDAIGMGLSPTIFTYNALLNGHCKEGNPLKAFALLMEM 344
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + + G++PD
Sbjct: 146 FCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + +E EL NE ++ G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P IT+N +I LC G + +A L+ M P + Y TLI
Sbjct: 266 QLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLI 318
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ + G+ P++ TY L +A +++ + LKPD TYT ++D
Sbjct: 260 AMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLID 319
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
G CK G E I+ + + V LI L ++ +G P
Sbjct: 320 GSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKP 379
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
T+ +I C G + LL M G +P
Sbjct: 380 DNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVP 414
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 47/132 (35%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +AR +ID M P+ TYT L
Sbjct: 287 CKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G +LL E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G P VVT
Sbjct: 407 MXRDGHVPCVVT 418
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
F RKV++++ Y V + ILE G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYKEILEC----------GYPASLYFFNILMHRFCKEG 150
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI----------------PRTITFN 108
+ + + G+ P+VV+ L I +G + P T++
Sbjct: 151 EMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 210
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC K+D+A L M ++G +P+ + TLI
Sbjct: 211 VLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLI 248
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D AR D M + G N T+T+L + +++ +K +GL P++
Sbjct: 208 CKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNL 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVID- 97
YTY +M+ +C G+ +L +E ERGV NVVT L ++D
Sbjct: 268 YTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQ 327
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P IT+N +I C VG +DKA LL + +G PS Y+ LI+
Sbjct: 328 MKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIE 380
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +EA K++D M PN+ TY L +A +L +K++GL P +
Sbjct: 313 CREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSL 372
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI--- 98
TY +++G+ K G V +L E RG++P+ VT L + I
Sbjct: 373 VTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSS 432
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P + +I LC G + ++ L M E PS +Y+T+I
Sbjct: 433 MEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMI 484
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A + D M + G NV TY L EA +++ +K + P+
Sbjct: 277 YCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPN 336
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHN-------VIDI-- 98
+ TY ++ GFC VG ++ LL++ G++P++VT LI ++ V D+
Sbjct: 337 LITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAR 396
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T +I A + +++KA + M + G +P +Y LI L
Sbjct: 397 EMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGL 452
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C+ + +A ++D + NG P++ TY IL
Sbjct: 347 FCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPS 406
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+A+++ +++ GL PDVY Y ++ G C G E +L
Sbjct: 407 KVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFR 466
Query: 76 EAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVG 118
E V P+ V T+IH L + G +P +++++I LC G
Sbjct: 467 SMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDG 526
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
K ++A +LL M E PS ++ + + K
Sbjct: 527 KWEEAEVLLDKMIELQLKPSASILNMISK 555
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+++++L +++ GL P+V YT ++DG CK G ++ E G+ N T L
Sbjct: 180 KSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLI 239
Query: 94 NVI----------DI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N + D+ G P T+N ++ CG GKI +A L M E G
Sbjct: 240 NGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVE 299
Query: 137 PSRTLYDTLI 146
+ Y+TLI
Sbjct: 300 ANVVTYNTLI 309
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 28/142 (19%)
Query: 18 MFDNG--YHPNVTTYTI--------LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
M D G + PN+ + E + N + +K DVY++ ++ G C+ G
Sbjct: 119 MVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNL 178
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ +LL + G++PNVV + +I C G I++A L
Sbjct: 179 DKSFQLLGLLQDMGLSPNVV------------------IYTTLIDGCCKNGDIERARLFF 220
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
M E G + ++ + LI L
Sbjct: 221 DKMGEMGLVANQYTFTVLINGL 242
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 29/175 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC K A +V+ M G P + TY I EA+E + +K + D
Sbjct: 215 YCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEID 274
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDIGH 100
V +YT V+ GF + G + + +E ++ GV PNV T LI + N + +
Sbjct: 275 VVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFE 334
Query: 101 --------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +TFN VI+ LC VG +++AL + M EHG S Y+ +I+
Sbjct: 335 EMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIR 389
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 37/162 (22%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M ++G H ++ ++ L A+++L +K+ +PD +Y + +G+C R
Sbjct: 162 MHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSR-FRPDTVSYNILANGYCLKKR 220
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR---------------------TI 105
+ + +L E ++RG+ P +VT +N + G+ +
Sbjct: 221 TPMALRVLKEMVQRGIEPTMVT----YNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVV 276
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ VI G++ KA + M + G P+ Y+ LI+
Sbjct: 277 SYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQ 318
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 32/170 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGY-HPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C K+ A V + M G PNV T+ ++ A + + GL+
Sbjct: 320 FCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRA 379
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------- 91
V TY V+ FC G + +E+ + + PN+ T LI
Sbjct: 380 SVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAG 439
Query: 92 --LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
L +++ G +PR TFN V+ L G D A +L + G++ R
Sbjct: 440 KLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILRMQSRCGRVVRR 489
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A ++ M G N T+ L +A E+L + +G PD+
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 507
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G+++E +ELLN + +G++PN + + N
Sbjct: 508 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN 567
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC G+ ++A+ L M G +P+ + Y LI+ L
Sbjct: 568 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 622
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M + G P+V TYT I EA +L ++ G KP+ +YT V+ G
Sbjct: 388 ELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 447
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C R + +L+++ I++G N +T L N I++ G P
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 507
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK D+AL LL +M G P+ +Y ++ L ++
Sbjct: 508 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSRE 555
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C+ + E +++ MFD + T+ IL + E+L + G PDV
Sbjct: 343 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDV 402
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
TYT V++GFCK G +E + LL G PN ++ +
Sbjct: 403 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQ 462
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G ITFN +I LC G +++A+ LL M +G P Y T+I L
Sbjct: 463 MIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 517
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
++ EA +L ++ + G +PDV +Y AV+ G C R V EL+ E + PN+V
Sbjct: 207 SVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV--- 263
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC G ++ +L M EHG P +Y T+I
Sbjct: 264 ---------------TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 304
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ T+ L +Y E+L + G PD+ Y ++DG CK G E+
Sbjct: 260 PNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEI 319
Query: 74 LNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
LN G+ PNVV TL+ L + D +TFN ++ C
Sbjct: 320 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 379
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +D+ + LL M E G +P Y T+I
Sbjct: 380 NGLVDRVIELLEQMLERGCMPDVITYTTVI 409
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 29/124 (23%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP--------------------NVVT 88
P+ YTY V+ C GR + + +L+E RG P V
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179
Query: 89 LIHLHN---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
L LH +D+G+ N V+ A+C G +D+AL LL + G P Y+ +
Sbjct: 180 LEDLHARGCALDVGNC------NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAV 233
Query: 146 IKKL 149
+K L
Sbjct: 234 LKGL 237
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 15 IDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
+D++ P + TY L +A +L + GL PDV T+ +V+DG CK
Sbjct: 461 VDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCK 520
Query: 64 VGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTIT 106
R + + A+ERG PNVVT L L ++++G T+T
Sbjct: 521 EQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVT 580
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ V+ L VG+++ A+++L M + G +P Y+TLI
Sbjct: 581 YSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLI 620
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+ M D G P+ TY L EA +L + G P V TYT +
Sbjct: 596 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC 655
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-----------IGHI------ 101
G C+ GR +E +E+L+ RG PN +T +++D +G+
Sbjct: 656 HGLCRSGRFDEAVEILDYMAARGCAPNAIT---YSSIVDGLCKAGRVTEALGYFEKMARD 712
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P I ++ +I LC G+ID+A L M G+IP + LI L
Sbjct: 713 EVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGL 764
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDG-LKPD 50
C F EA +++DYM G PN TY+ + EA + D + P
Sbjct: 659 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPH 718
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI---- 105
V Y+A++DG CK GR +E E L I G P+VVT I ++ + D G I +
Sbjct: 719 VIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFC 778
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I A C G+ A LL M HG + + +IK L
Sbjct: 779 GMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKAL 834
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V + G PNV TY+ L EA ++L + G + +
Sbjct: 519 CKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANT 578
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY+ V+DG KVGR + + +L + + G P+ V TLI L
Sbjct: 579 VTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLRE 638
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G P +T+ + LC G+ D+A+ +L M G P+ Y +++ L
Sbjct: 639 MLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 693
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 28/164 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N+ + K+++ M G PN TY L EA+ +L + +G P++
Sbjct: 47 CRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPEL 106
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIH--------------LHN 94
T+ ++ G CK G +++E ++RG P+V L+H
Sbjct: 107 ITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQ 166
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
V+ IG P +T+N ++ L G+++ A ++L L+ E P+
Sbjct: 167 VLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPT 210
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 34/156 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + A +V+D M D G+ P+V +T+L EA+ V G PD
Sbjct: 117 CKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDA 176
Query: 52 YTYTAVMDGFCKVGR---SNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
TY ++DG K GR + V++LL E+ +P V T I + + G++
Sbjct: 177 VTYNTMVDGLYKAGRLEAAGMVLQLLAESFS---SPTVFTFTIAVDGLSKAGNLTGAYEF 233
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLL 127
P T+T++ +I LC GK+D AL LL
Sbjct: 234 FDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLL 269
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ +A+ G +P V TY+ V+DG C+ ++ +LL E RG PN VT
Sbjct: 17 VCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNT 76
Query: 92 LHNVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L N + G P ITF +I+ LC G+I+ A ++ M + G
Sbjct: 77 LVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRG 136
Query: 135 KIPSRTLYDTLIKKL 149
+P ++ L+ L
Sbjct: 137 FVPDVEIHTVLLHAL 151
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V+ + ++ P V T+TI AYE ++ G+ P+ TY A++D
Sbjct: 195 AGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALID 254
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-------LHNVIDIGH----IPRTITFN 108
G CK G+ + + LL + + +L+H L I + +P + FN
Sbjct: 255 GLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFN 314
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ LC ++D+A L +M E G Y+ L+K L
Sbjct: 315 SLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGL 355
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 22 GYHPNVTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
G PNV T++ L E YE ++ V +G+ P+ +TY +++G CK G S
Sbjct: 376 GCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAV--EGISPNRFTYAFLLEGLCKAGDS 433
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI----PRTITFNNVIQALCGVGKIDKA 123
+ + + +ER + IH V D + P +T+N ++ L G + A
Sbjct: 434 RRLEQCFEQMLEREWRSSSSWPIHSPEV-DFLMVQVCRPTLVTYNTLVTGLSKSGMVRDA 492
Query: 124 LLLLFLMYEHGKIPSRTLYDTLIKKL 149
L LL M E G P +++++ L
Sbjct: 493 LGLLEFMIESGLSPDVITFNSVLDGL 518
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI--- 90
+A E+L + DG PD Y VMDG K G +LL E RG +P++ T
Sbjct: 875 QALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMI 934
Query: 91 --------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ ++ P I ++++I A C K+D A LL G
Sbjct: 935 SGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL---RSSGIE 991
Query: 137 PSRTLYDTLIKKL 149
P+ T+Y T++ L
Sbjct: 992 PTITMYSTMVDSL 1004
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 35/140 (25%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV--- 70
PNV + L EA+E+ +K G DV TY ++ G CK+ R E
Sbjct: 308 PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRH 367
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+EL+ G +PNVV TF+ +IQ LC G++++A + M
Sbjct: 368 VELMRRT--EGCSPNVV------------------TFSTLIQGLCNAGRVNQAWEVYERM 407
Query: 131 YE-HGKIPSRTLYDTLIKKL 149
G P+R Y L++ L
Sbjct: 408 VAVEGISPNRFTYAFLLEGL 427
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNV 95
TY +++G CK GR + +AI+ G P VVT L +
Sbjct: 3 TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+N ++ AL G G+ +A LL M +G P + +IK L
Sbjct: 63 AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGL 116
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M NG P + T+ ++ A+ ++ + + G PDV +T ++
Sbjct: 89 EAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLL 148
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHI 101
C++GR +E + + G TP+ VT + L + +
Sbjct: 149 HALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSS 208
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P TF + L G + A M + G P+ YD LI L
Sbjct: 209 PTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGL 256
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 32/146 (21%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K++ M G+ P++ TYTI+ A + + LKPD Y++++D
Sbjct: 911 AAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLID 970
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
FCK + ++ +LL + G+ P + ++ ++ +LC
Sbjct: 971 AFCKADKVDDAWKLLRSS---GIEPTIT------------------MYSTMVDSLCKNRG 1009
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTL 145
DKAL ++ M P ++ +L
Sbjct: 1010 TDKALEVIREMKSKNCEPGIHIWTSL 1035
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A ++ M G N T+ L +A E+L + +G PD+
Sbjct: 485 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 544
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G+++E +ELLN + +G++PN + + N
Sbjct: 545 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN 604
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC G+ ++A+ L M G +P+ + Y LI+ L
Sbjct: 605 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 659
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M ++G P+V TYT I EA +L ++ G KP+ +YT V+ G
Sbjct: 425 ELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 484
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C R + +L+++ I++G N +T L N I++ G P
Sbjct: 485 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 544
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK D+AL LL +M G P+ +Y ++ L ++
Sbjct: 545 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSRE 592
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C+ + E +++ MFD + T+ IL + E+L + G PDV
Sbjct: 380 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDV 439
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
TYT V++GFCK G +E + LL G PN ++ +
Sbjct: 440 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQ 499
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G ITFN +I LC G +++A+ LL M +G P Y T+I L
Sbjct: 500 MIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 554
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ T+ L +Y E+L + G PD+ Y ++DG CK G E+
Sbjct: 297 PNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEI 356
Query: 74 LNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
LN G+ PNVV TL+ L + D +TFN ++ C
Sbjct: 357 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 416
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +D+ + LL M EHG +P Y T+I
Sbjct: 417 NGLVDRVIELLEQMLEHGCMPDVITYTTVI 446
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
++ EA +L ++ + G +PDV +Y AV+ G C R V EL+ E + PN+V
Sbjct: 244 SVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV--- 300
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC G ++ +L M EHG P +Y T+I
Sbjct: 301 ---------------TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 341
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 29/124 (23%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP--------------------NVVT 88
P+ YTY V+ C GR + + +L+E RG P V
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 216
Query: 89 LIHLHN---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
L LH +D+G+ N V+ A+C G +D+AL LL + G P Y+ +
Sbjct: 217 LEDLHARGCALDVGNC------NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAV 270
Query: 146 IKKL 149
+K L
Sbjct: 271 LKGL 274
>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
Length = 553
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ EA V+D M + G PN TYT I EA +L + G P
Sbjct: 184 CSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPST 243
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ CKVG EV LL E+ +G TP+V IT+++ +
Sbjct: 244 ATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDV------------------ITYSSYM 285
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G+IDK+ L+ M +G PS + L+
Sbjct: 286 DGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILL 320
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 66/211 (31%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA+++++ M +G+ P+ TY +L E +L G PD
Sbjct: 218 YCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPD 277
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------ 92
V TY++ MDG CK GR ++ L+++ + G+ P+ VTL L
Sbjct: 278 VITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLE 337
Query: 93 --------HNVIDIGHIPRTI--------------------------TFNNVIQALCGVG 118
NV++ + R + TFN V+ +LC +G
Sbjct: 338 CSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLG 397
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ KA LFL+ + + Y+TLI+ L
Sbjct: 398 RLHKA---LFLLRSKEFVATVITYNTLIRHL 425
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVM 58
A V+D M +G P+ T+L AYE++ + +G+ PDV TY+ ++
Sbjct: 121 ALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLI 180
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
G C G+ E + +L+ +E G PN T ++H L+ +I G
Sbjct: 181 SGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFA 240
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T T+N +++ALC VG ++ LL G P Y + + L
Sbjct: 241 PSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGL 288
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ ++D M NG P+ T IL A +L G +V
Sbjct: 289 CKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANV 348
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
Y VM C R V++L + ++G+ PN T I +H++ +G + +
Sbjct: 349 VNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLRS 408
Query: 105 -------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IT+N +I+ L G+ ++ LLL+ M E G P+ Y +I L
Sbjct: 409 KEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCL 460
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV------------ 95
+PD +T V R + +L+ GV P+ L V
Sbjct: 99 RPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAY 158
Query: 96 ------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T++ +I LC G++ +AL +L LM E G P+ Y ++
Sbjct: 159 EVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIV 215
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 26/147 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYTY 54
C+++ + K+ M G PN T+ I+ ++ L +++ V TY
Sbjct: 359 CDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLRSKEFVATVITY 418
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
++ G NEV LL + IE G+ PN IT++ VI L
Sbjct: 419 NTLIRHLSISGEGNEVCLLLYQMIEGGIAPN------------------DITYSLVIDCL 460
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTL 141
C K AL + E PS L
Sbjct: 461 CREEKFLVALCCFYQSLEDDFFPSAFL 487
>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
Length = 633
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ EA V+D M + G PN TYT I EA +L + G P
Sbjct: 264 CSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPST 323
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ CKVG EV LL E+ +G TP+V IT+++ +
Sbjct: 324 ATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDV------------------ITYSSYM 365
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G+IDK+ L+ M +G PS + L+
Sbjct: 366 DGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILL 400
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 66/211 (31%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA+++++ M +G+ P+ TY +L E +L G PD
Sbjct: 298 YCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPD 357
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------ 92
V TY++ MDG CK GR ++ L+++ + G+ P+ VTL L
Sbjct: 358 VITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLE 417
Query: 93 --------HNVIDIGHIPRTI--------------------------TFNNVIQALCGVG 118
NV++ + R + TFN V+ +LC +G
Sbjct: 418 CSAELGWDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLG 477
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ KAL LL + + Y+TLI+ L
Sbjct: 478 RLHKALCLL---RSKEFVATVITYNTLIRHL 505
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVM 58
A V+D M +G P+ T+L AYE++ + +G+ PDV TY+ ++
Sbjct: 201 ALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLI 260
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
G C G+ E + +L+ +E G PN T ++H L+ +I G
Sbjct: 261 SGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFA 320
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T T+N +++ALC VG ++ LL G P Y + + L
Sbjct: 321 PSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGL 368
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ ++D M NG P+ T IL A +L G +V
Sbjct: 369 CKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANV 428
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
Y VM C R V++L + ++G+ PN T I +H++ +G + +
Sbjct: 429 VNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALCLLRS 488
Query: 105 -------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IT+N +I+ L G+ ++ LLL+ M E G P+ Y +I L
Sbjct: 489 KEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCL 540
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV------------ 95
+PD +T V R + +L+ GV P+ L V
Sbjct: 179 RPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAY 238
Query: 96 ------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T++ +I LC G++ +AL +L LM E G P+ Y ++
Sbjct: 239 EVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIV 295
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 61/182 (33%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
C + + A+++++ + G+ NV Y L ++ ++ G+ P+
Sbjct: 404 CRSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAPNS 463
Query: 52 YTYTAVMDGFCKVGR--------------------------------SNEVMELLNEAIE 79
+T+ V+ CK+GR NEV LL + IE
Sbjct: 464 WTFNIVVHSLCKLGRLHKALCLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIE 523
Query: 80 RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
G+ PN IT++ VI LC K AL + E PS
Sbjct: 524 GGIAPN------------------DITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSA 565
Query: 140 TL 141
L
Sbjct: 566 FL 567
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A ++ D M P+ TYT ++EA ++ + L+PD
Sbjct: 368 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 427
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYTA++DG+CK G+ E L N+ ++ G+TPN+VT LH
Sbjct: 428 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 487
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G T+N+++ LC G ID+A+ L+ M G P Y TL+
Sbjct: 488 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM 540
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +V+ M G P+ YT L AY + ++ + PD
Sbjct: 334 CKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDF 393
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN- 94
TYTAV+ G C+ GR E +L +E + + + P+ VT LHN
Sbjct: 394 ITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQ 453
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +T+ + LC G++D A LL M G + Y++L+ L
Sbjct: 454 MLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGL 508
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
++EA+++L+ ++ G PDV +Y+ V++G+C+VG V++L+ E +G+ PN
Sbjct: 269 VVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPN------ 322
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N VI LC GK+ +A +L M G P +Y TLI
Sbjct: 323 ------------PYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLI 365
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 31/159 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D A +++ M G N+ TY L +A +++ +++ G P
Sbjct: 474 CKCGEVD--TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHP 531
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D TYT +MD +CK ELL + ++R + P VV TFN
Sbjct: 532 DAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVV------------------TFNV 573
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ C G ++ LL M E G +P+ T Y++LIK+
Sbjct: 574 LMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQ 612
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC + K+I+ M G PN TY + EA +L + ++G+ PD
Sbjct: 298 YCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPD 357
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
YT ++DGFCK+G + L +E +R ++P+ +T L V++ +
Sbjct: 358 GVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFH 417
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ +I C GK+ +A L M + G P+ Y L L
Sbjct: 418 EMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGL 473
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 29/153 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
+C + K++ +M + G PN TTY ++++ Y + N++ G+ PD
Sbjct: 578 FCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPD 637
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ G CK E L + + +G V ++N +
Sbjct: 638 GNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVS------------------SYNAL 679
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
I+ K +A L M G + R +Y+
Sbjct: 680 IKGFYKRKKFLEARELFEQMRREGLVADREIYN 712
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A +++ M D P V T+ +L + ++L + G+ P+
Sbjct: 543 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPN 602
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
TY +++ +C E+ +GV P+ T +N++ GH
Sbjct: 603 ATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNT----YNILIKGH 648
>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
Length = 647
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EAR + M NG P V TYT L +A ++ + G+ P+V
Sbjct: 316 CRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNV 375
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY++++DG CK GR+ +ELL+ ++ PN TIT+++VI
Sbjct: 376 VTYSSLIDGLCKGGRAASAVELLDRMVKERKLPN------------------TITYSSVI 417
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G + +A+ +L M G+ P L+ LI L
Sbjct: 418 DGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGL 455
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 34/169 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
AR ++ M G+ P TY +L +A + N+ KPD +Y V
Sbjct: 256 ARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACSYNTV 311
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGH 100
+DG C+ GR E +L E I G P VV TLIH + G
Sbjct: 312 IDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGI 371
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P +T++++I LC G+ A+ LL M + K+P+ Y ++I L
Sbjct: 372 MPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGL 420
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 22/161 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++D M PN TY+ + +A E+L ++ G KPD
Sbjct: 386 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDA 445
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ ++ G C GR+ E L+E G+ PN +T LH I+ + V+
Sbjct: 446 GLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTW-SLHGRIN----------DAVV 494
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
ALC G++ +A + M G T + L++ L ++
Sbjct: 495 TALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKK 535
>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
Length = 571
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EAR + M NG P V TYT L +A ++ + G+ P+V
Sbjct: 217 CRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNV 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY++++DG CK GR+ +ELL+ ++ PN TIT+++VI
Sbjct: 277 VTYSSLIDGLCKGGRAASAVELLDRMVKERKLPN------------------TITYSSVI 318
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G + +A+ +L M G+ P L+ LI L
Sbjct: 319 DGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGL 356
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 34/169 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
AR ++ M G+ P TY +L +A + N+ KPD +Y V
Sbjct: 157 ARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACSYNTV 212
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGH 100
+DG C+ GR E +L E I G P VV TLIH + G
Sbjct: 213 IDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGI 272
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P +T++++I LC G+ A+ LL M + K+P+ Y ++I L
Sbjct: 273 MPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGL 321
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 22/161 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++D M PN TY+ + +A E+L ++ G KPD
Sbjct: 287 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDA 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ ++ G C GR+ E L+E G+ PN +T LH I+ + V+
Sbjct: 347 GLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTW-SLHGRIN----------DAVV 395
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
ALC G++ +A + M G T + L++ L ++
Sbjct: 396 TALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKK 436
>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
alba]
Length = 413
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 134 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 193
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 194 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 253
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G +++A L+ M G P + Y TLI
Sbjct: 254 QMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 306
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 239 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPD 298
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
+TYT ++DG CK G + E I+ + + V L
Sbjct: 299 KFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLR 358
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T T+ +I C G + K LL M +G +PS Y+ L+
Sbjct: 359 EMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLM 411
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 89 FDTCRKVLEHLMKLRYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 140
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 141 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 200
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 201 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 236
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E K+ D G P++ Y L A+E++ ++ + PD TY +M
Sbjct: 340 ETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLM 399
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
G C +GR +E +L++E ERG+ P++VT L + +++ G
Sbjct: 400 RGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 459
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+N +IQ LC G+ D A ++ M E+G P + Y +LI+ L +
Sbjct: 460 PTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 510
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ A D M + G V TY +L EAYE++ + GL PD
Sbjct: 227 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 286
Query: 51 VYTYTAVMDGFCKVGRSNEVME-----------------------------------LLN 75
V+TY +++G CK G + +E L +
Sbjct: 287 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 346
Query: 76 EAIERGVTPNVV---TLIHLHNV---ID-----IGHI------PRTITFNNVIQALCGVG 118
EA+ RG+ P++V LI+ H+ ID +G + P +T+N +++ LC +G
Sbjct: 347 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 406
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+A L+ M E G P Y+TLI
Sbjct: 407 RVDEARKLIDEMTERGIQPDLVTYNTLI 434
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P+ YTY V+ G+CKVGR +E +++ +E + +G P +
Sbjct: 176 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK-----------------PEAV 218
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I C GK+D ALL M E G + Y+ L+ L
Sbjct: 219 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 262
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ TY V+ GFC GR ++++ E ERG G P T+
Sbjct: 142 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERG-----------------GIAPNQYTY 184
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
VI C VG++D+A+ + M G++ P +Y+ LI
Sbjct: 185 GTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 224
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTY-TIL----------EAYEMLMNVKNDG-LK 48
+C++ A ++ M + G PN TY T++ EA ++ + G +K
Sbjct: 155 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 214
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
P+ Y A++ G+C G+ + + + +ERGV V T L+H
Sbjct: 215 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 274
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + G P T+N +I C G + KAL + M G + Y LI L +
Sbjct: 275 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 334
Query: 152 Q 152
+
Sbjct: 335 K 335
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A + M + P+V Y +L EA E++ ++ G+KPD
Sbjct: 340 FCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPD 399
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY+ ++ G+CK+G ++ EL + +++GV P+ +T L
Sbjct: 400 VVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFE 459
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +G P T+ +I C G + KAL L M + G +P Y LI L +
Sbjct: 460 KMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSK 517
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A +++ M + G P++ T+ + +A +M + +GL PD
Sbjct: 200 FCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPD 259
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTI---- 105
+Y ++ G+CK G +E + + E ++GV P+VVT L H + G++ R +
Sbjct: 260 GVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVG 319
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TF +I C G +D ALL + M E PS Y+ LI
Sbjct: 320 QMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLI 372
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
YC EAR++I M G P+V TY TIL A+E+ + G+ PD
Sbjct: 375 YCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPD 434
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP----------------NVVTLIHLHN 94
TY++++ G C+ R + EL + ++ G+ P NV + LH+
Sbjct: 435 AITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHD 494
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G +P +T++ +I L + +A LLF +Y +P Y+ L+
Sbjct: 495 EMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALM 547
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKND----GLKPDVYTYTAVM 58
AR+++ M +G PNV TY IL + E L V +D G P+V TY ++
Sbjct: 138 ARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLV 197
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
FC+ G + L+ E GV P++V TFN V+ LC G
Sbjct: 198 AAFCRAGEVDAAERLVGVMREGGVRPSLV------------------TFNTVVNGLCKAG 239
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ A + M G P Y+TL+
Sbjct: 240 RMEDARKMFDEMAREGLTPDGVSYNTLV 267
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 29/139 (20%)
Query: 22 GYHPNVTTY----------TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
GY P++ Y ++ A +L ++ DG+ P+VYTY ++ C G+ E +
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174
Query: 72 ELLNEAIE-RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
++ + + G PNVVT +N ++ A C G++D A L+ +M
Sbjct: 175 GVVGDDMRGAGCAPNVVT------------------YNTLVAAFCRAGEVDAAERLVGVM 216
Query: 131 YEHGKIPSRTLYDTLIKKL 149
E G PS ++T++ L
Sbjct: 217 REGGVRPSLVTFNTVVNGL 235
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ + M G P+ TYT L +A + + G+ PDV
Sbjct: 446 CEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDV 505
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ ++DG K R+ E LL + P+ + L H RT F +V+
Sbjct: 506 VTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALM------HCCRTAEFKSVV 559
Query: 112 QALCG 116
L G
Sbjct: 560 ALLKG 564
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V D + G P+V +Y L E +++ + G+ PD
Sbjct: 152 FCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + + EL +E + +G+ PN VT L
Sbjct: 212 VYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G +++A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLI 324
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M P++ TY L +A++++ + GLKPD TYT ++D
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLID 325
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIP 102
G CK G + E I+ + + V L ++ +G P
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKP 385
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T T+ +I +C G + K LL M G PS Y+ L+
Sbjct: 386 DTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLM 429
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 293 CKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 352
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +M+ + + GLKPD TYT +++ CK G + +LL E
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKE 412
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 413 MQXDGHAPSVVT 424
>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
Length = 735
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 28/142 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA+++I M G P+V TY+ + +A +M+ ++ +G KP+
Sbjct: 346 FCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPN 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
T+TA+++G CKVG+S+E ELLN++ E TP+ +T ++H +
Sbjct: 406 TVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVM 465
Query: 94 NVIDIGHIPRTITFNNVIQALC 115
++ G P T+ N +I ALC
Sbjct: 466 QMLQKGFFPTTVEINLLIHALC 487
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + +++ M D G P+ TY +L EA L + + D
Sbjct: 277 CKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDE 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y+A + FC GR E E++ E I +G P+VV T++ V+
Sbjct: 337 VGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVV------------------TYSAVV 378
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C +G++D+A ++ MY++G P+ + L+ L
Sbjct: 379 DGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGL 416
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 22 GYHPNVTTYTI----LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
GY V ++ + EA E++ + + G +PDV TY+AV+DGFC++G ++ +++
Sbjct: 338 GYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHM 397
Query: 78 IERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ G PN T+T ++ LC VGK +A LL E P
Sbjct: 398 YKNGCKPN------------------TVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTP 439
Query: 138 SRTLYDTLI 146
S Y ++
Sbjct: 440 SAITYSVVM 448
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 30/162 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-----------VTTYTILEAYEMLMNVKNDGLKPD 50
Y A +V+ M +G P+ V I +A E ++ G+ PD
Sbjct: 171 YSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPD 230
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
V TY ++ G C R + +E+++ ++ G P+ ++ L
Sbjct: 231 VVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLE 290
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ D G P +T+N +I L G D+A L FL GK
Sbjct: 291 RMSDAGIFPDQVTYNMLIHGLAKHGHADEA--LSFLRESEGK 330
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A +L ++ DG PD+ ++ GR ++ +E GV P+VVT
Sbjct: 180 AMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVT------ 233
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I+ LCG +I AL ++ M ++G +P + Y T++ L
Sbjct: 234 ------------YNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFL 276
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 33/138 (23%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+ + D A ++D M+ HP+V TYT + EA ++ + N GL P
Sbjct: 521 FSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPT 580
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY V+ +C+ G +++ LL++ + + G + +N
Sbjct: 581 PVTYRTVIHRYCEKGAVEDLLNLLDKMLAKEGFSS---------------------AYNQ 619
Query: 110 VIQALCGVGKIDKALLLL 127
VI+ LC GK+ +A LL
Sbjct: 620 VIEKLCAFGKLSEANNLL 637
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCNK D +A D M G ++ TY + +A M+ ++ G+ PD
Sbjct: 331 YCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPD 390
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
T+ +++G+C+ G + LL+E + +G+ P +VT L
Sbjct: 391 AVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFS 450
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G +P I FN +I C G ID+A LL M +P Y+TL++
Sbjct: 451 KIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQ 504
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A++ I +M G PNV TY + A + +K+ GL+PD
Sbjct: 227 CKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDC 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY + + G CK GR E L+ + +E G+ PN VT L
Sbjct: 287 YTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDE 346
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G + +T+N I AL G++ A ++ M E G +P ++ LI
Sbjct: 347 MISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILI 398
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+N EA + + G P++ + L A+++L + N + PD T
Sbjct: 439 RNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEIT 498
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN--------------VI 96
Y +M G+C+ G+ E +LL+E RG+ P+ + TLI ++ ++
Sbjct: 499 YNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMM 558
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
G P +T+N +IQ LC + + A LL M G P + Y ++I+ ++
Sbjct: 559 TTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAME 612
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTT----------------YTILEAYEMLMNVKND 45
YC EA + + + G+ PN+ T +L A MN+++
Sbjct: 156 YCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSS 215
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------- 93
+YT+ +++ CK G+ + E + GV PNVV T+IH H
Sbjct: 216 -----LYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRA 270
Query: 94 -----NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D G P T+N+ I LC G++++A L+ M E G +P+ Y+ LI
Sbjct: 271 RVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALI 328
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
YC + EAR+++D M G P+ +Y T++ Y ++K+ G P
Sbjct: 506 YCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPT 565
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+ TY A++ G CK ELL E + +G+TP+ T + +
Sbjct: 566 ILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSI 607
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 29/153 (18%)
Query: 11 ARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTAVMD 59
A +++D M D G N+ TY +IL+A +L +K G++PD++TYT +++
Sbjct: 392 ALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLIN 451
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CKVGR ++ ++ + + +G +PN+ T+ ++I C G
Sbjct: 452 GLCKVGRLDDAQKVFEDLLVKGYSPNIY------------------TYTSLINGFCNKGF 493
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+ L +L M ++G IP+ Y+ LI L ++
Sbjct: 494 FDEGLAMLSKMKDNGCIPNAITYEILIHSLFEK 526
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + + M + +PNV T++IL EA +L + +K DV TY ++MD
Sbjct: 252 AVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMD 311
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI----------------P 102
G+C V + N+ L N +RGVTP+V + I ++ I + P
Sbjct: 312 GYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFP 371
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+N+++ LC G+ AL L+ M++ G+ + Y++++
Sbjct: 372 NVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSIL 415
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 28/151 (18%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PNV Y+ + +A+++ + + + PDV TY++++ GFC VG+ ++
Sbjct: 195 RPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVD 254
Query: 73 LLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT----------------ITFNNVIQALC 115
L N I + PNV T I + G + +T+N+++ C
Sbjct: 255 LFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYC 314
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V +++KA L +M + G P Y +I
Sbjct: 315 LVKQVNKAKSLFNVMAQRGVTPDVWSYSIMI 345
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A ++ + + G P++ TYT+L +A ++ ++ G P++
Sbjct: 419 CKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNI 478
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH 91
YTYT++++GFC G +E + +L++ + G PN +T LIH
Sbjct: 479 YTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIH 521
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 14 VIDYMFDNGYHPNVTTYTIL--------EAYEMLM---NVKNDGLKPDVYTYTAVMDGFC 62
V + GYHP+ T+TIL E ++ L V G + D +Y +++G C
Sbjct: 115 VFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLC 174
Query: 63 KVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI-------GHIPRTI 105
+VG + ++LL + V PNVV T+I +++ D+ P +
Sbjct: 175 RVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVV 234
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I C VGK+ A+ L M P+ + LI
Sbjct: 235 TYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILI 275
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+KV + + GY PN+ TYT L E ML +K++G P+
Sbjct: 454 CKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNA 513
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TY ++ + +++ +LL E I RG+
Sbjct: 514 ITYEILIHSLFEKDENDKAEKLLREMIARGL 544
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A D + G+ + +Y L A ++L V ++P+V
Sbjct: 139 CLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNV 198
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
Y+ ++D CK N+ +L E + + ++P+VVT + L N
Sbjct: 199 VMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNR 258
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I P TF+ +I C GK+ +A +L +M + Y++L+
Sbjct: 259 MISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLM 310
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----- 89
A + ++ +G+KPD T +M+ F ++G + + +++G P+ VT
Sbjct: 77 ALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIK 136
Query: 90 -----------IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI- 136
++ H+ V+ G +++ +I LC VG+ A+ LL + GK+
Sbjct: 137 GLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRV--DGKLV 194
Query: 137 -PSRTLYDTLIKKL 149
P+ +Y T+I +
Sbjct: 195 RPNVVMYSTIIDSM 208
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A ++ M G N T+ L +A E+L + +G PD+
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 507
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
+Y+ V+DG K G+++E +ELLN + +G++PN + + N
Sbjct: 508 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN 567
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D + +N VI +LC G+ ++A+ L M G +P+ + Y LI+ L
Sbjct: 568 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 622
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M +G P+V TYT I EA +L ++ G KP+ +YT V+ G
Sbjct: 388 ELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 447
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDI-------GHIPRT 104
C R + +L+++ I++G N +T L N I++ G P
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 507
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+++ VI L GK D+AL LL +M G P+ +Y ++ L ++
Sbjct: 508 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSRE 555
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C+ + E +++ MFD + T+ IL + E+L + G PDV
Sbjct: 343 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDV 402
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
TYT V++GFCK G +E + LL G PN ++ +
Sbjct: 403 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQ 462
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G ITFN +I LC G +++A+ LL M +G P Y T+I L
Sbjct: 463 MIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 517
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ T+ L +Y E+L + G PD+ Y ++DG CK G E+
Sbjct: 260 PNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEI 319
Query: 74 LNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
LN G+ PNVV TL+ L + D +TFN ++ C
Sbjct: 320 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 379
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +D+ + LL M HG +P Y T+I
Sbjct: 380 NGLVDRVIELLEQMLVHGCMPDVITYTTVI 409
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
++ +A +L ++ + G +PDV +Y AV+ G C R V EL+ E + PN+V
Sbjct: 207 SVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV--- 263
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC G ++ +L M EHG P +Y T+I
Sbjct: 264 ---------------TFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATII 304
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 29/124 (23%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP--------------------NVVT 88
P+ YTY V+ C GR + + +L+E RG P V
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179
Query: 89 LIHLHN---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
L LH +D+G+ N V+ A+C G +DKAL LL + G P Y+ +
Sbjct: 180 LEDLHARGCALDVGNC------NLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAV 233
Query: 146 IKKL 149
+K L
Sbjct: 234 LKGL 237
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 148 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 207
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 208 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 267
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 268 RMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 320
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 253 HCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPD 312
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + E I+ + + V LI L
Sbjct: 313 KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLR 372
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 373 EMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 425
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + Y+ ++ G +Y + +M FCK G
Sbjct: 103 FDTCRKVLEHLMKLKYFKLVWGF-----YKXILEC---GYPASLYFFNILMHRFCKDGDI 154
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 155 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 214
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 215 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 250
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 25/172 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA++++D M G P++ YT L A +L + + G PDV
Sbjct: 198 CKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDV 257
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDIGHI--- 101
TYT V+D CKVGR ++ E+ E + +PNVVT L V + G +
Sbjct: 258 VTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMRE 317
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I L V + ++A + M E G +P Y L + L
Sbjct: 318 MACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 369
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ AR VI + P+V TY L EA + +G P +
Sbjct: 93 CKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTL 152
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHN 94
++ A++ G C+ R + +E+ NE I+R PN+VT L
Sbjct: 153 VSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDR 212
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P + + ++ G++D AL LL M G IP Y +I KL
Sbjct: 213 MVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKL 267
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 30/138 (21%)
Query: 24 HPNVTTYTIL-----------EAYEMLMN-VKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
P+V +YT L A+++ V G +P+ +TY A++DG CK R +
Sbjct: 43 QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAAR 102
Query: 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
++ EA +R P+VV T+N ++ AL +G++D+AL M
Sbjct: 103 AVIAEARKRDFAPDVV------------------TYNTLMAALFQLGRVDEALATFTQMT 144
Query: 132 EHGKIPSRTLYDTLIKKL 149
E G +P+ ++ +I L
Sbjct: 145 EEGYVPTLVSFNAIITGL 162
>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
inaguensis]
Length = 431
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH---- 100
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L + +D+
Sbjct: 212 VYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYK 271
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 XMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLI 324
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 257 HCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPD 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TYT ++DG CK G + + I+ + + V LI L
Sbjct: 317 KFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLR 376
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T+ +I C G + K LL M +G +PS Y+ L+
Sbjct: 377 EMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLM 429
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLRYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 159 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G IP+ + TLI
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 254
>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
micromera]
Length = 431
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 212 VYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLI 324
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M P++ TY L +A +++ + GLKPD TYT ++D
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLID 325
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
G CK G B E IE + + V LI L ++ +G P
Sbjct: 326 GCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKP 385
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 386 DAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA +V + M +G PNV T TIL EA+ L V+ G+ P
Sbjct: 433 YCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPS 492
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
+ TY ++ G CKV + N++ + + I+RG P+ V +
Sbjct: 493 LCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYY 552
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P T+ ++I LC K+ + + L M G P R LY +LI
Sbjct: 553 KMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLI 605
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 67/217 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLK--- 48
C + D ++ M NG PN+ +Y+ L A+E+ +K+ G K
Sbjct: 329 CKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDH 388
Query: 49 --------------------------------PDVYTYTAVMDGFCKVGRSNEVMELLNE 76
PD Y Y++++ +C+ + E +E+
Sbjct: 389 IVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFEL 448
Query: 77 AIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
+ G+ PNVVT L+H L V G +P T+ +I LC V K
Sbjct: 449 MVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNK 508
Query: 120 IDKALLLLFLMYEHGKIPSRTLY----DTLIKKLDQQ 152
+ + M + G +P LY D +K LD Q
Sbjct: 509 PNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQ 545
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
+C+ +A +V D M G+ P+V +Y+I L Y ML+ + +G+ P+
Sbjct: 293 FCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPN 352
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT-PNVVTLIHLHNVI------------- 96
+ +Y++++ G C+ GR EL ++G ++V I LH
Sbjct: 353 LVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWN 412
Query: 97 DIGH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
D+ H +P ++++I A C ++ +AL + LM G P
Sbjct: 413 DMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICP 456
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+Y F+ H + +A E+ +K G PDV++Y+ ++DG CK G +L
Sbjct: 283 NYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLV 342
Query: 76 EAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
E G+TPN+V ++++++ LC G+++ A L + + G
Sbjct: 343 EMARNGITPNLV------------------SYSSLLHGLCRAGRVELAFELFKRLKDQG 383
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + E + +M G P+ YT L A E+ ++ +GL D
Sbjct: 574 CHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADS 633
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTIT-FNN 109
+ YT ++ GF KV + + E + +G+TP VVT L IG + + +N+
Sbjct: 634 FVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNS 693
Query: 110 VIQA 113
++QA
Sbjct: 694 MLQA 697
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKP 49
CYC +++ A ++ M G + YT L + ++ M + N GL P
Sbjct: 607 CYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTP 666
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
V TYT ++ G+ K+G + M + N ++ G+ P+
Sbjct: 667 TVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAPDA 703
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D EA ++ M D G PN+ TYT L E + ++ +GL PD YT
Sbjct: 543 DLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYT 602
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDI 98
+++ +CK +E+ E G++ + + + +++
Sbjct: 603 SLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNK 662
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
G P +T+ ++I +G KA+ + M + G P L
Sbjct: 663 GLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAPDAKL 705
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTILEA-------------YEMLMNVKNDGLKPDVY 52
N AR + D M +G PNV +Y++L + E+L ++ +G++P+
Sbjct: 190 NQIMYARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAA 249
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH-------LHNVIDI---- 98
TY + G C + L +RG N +IH +H I++
Sbjct: 250 TYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGM 309
Query: 99 ---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P +++ ++ LC G + +L M +G P+ Y +L+ L
Sbjct: 310 KKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGL 363
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + F EA + + + G P+ TY T++ Y +L+N +G PD
Sbjct: 297 CKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDE 356
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+TY +++DG C G +N + L NEA+ +G+ PNV+ TLI
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASE 416
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G IP TFN ++ LC +G + A L+ +M G P ++ LI Q
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQ 474
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ M GY P++ T+ IL A E+L + ++G+ PDV
Sbjct: 437 CKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDV 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY ++++G CK + +VME +E+G PN+ TFN ++
Sbjct: 497 YTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNL------------------FTFNILL 538
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++LC K+DKAL LL M P + TLI
Sbjct: 539 ESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLI 573
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D E K++D + G PN+ TY A M+ + + G KPDV
Sbjct: 227 CKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDV 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------LIHLH-----N 94
TY ++ G CK + E L + + G+ P+ T ++ L N
Sbjct: 287 VTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVN 346
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G +P T+ ++I LC G+ ++AL L G P+ LY+TLIK L Q
Sbjct: 347 AVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQ 404
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F +A KV M D G P+V ++TI A +L N+ + G + +V Y
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCT 186
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIG 99
V+ GF + +E EL + + GV+ + T L+H L VI G
Sbjct: 187 VVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRG 246
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P T+N IQ LC G++D A+ ++ + + G P Y+ LI L
Sbjct: 247 VLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGL 296
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C++ + A + + G PNV Y ILEA ++ + GL P+V
Sbjct: 367 CHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEV 426
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI--- 98
T+ +++G CK+G ++ L+ I +G P++ T LIH + N ++I
Sbjct: 427 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 486
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+N+++ LC K + + M E G P+ ++ L++ L
Sbjct: 487 MMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + + M + G PN+ T+ IL +A +L +KN + PD
Sbjct: 507 CKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDA 566
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE----RGVTPNVVTLIH--------------LH 93
T+ ++DGFCK G + L + E TP +IH
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQ 626
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D P T+ ++ C G +D L M E+G IPS T +I
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVI 679
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 20/122 (16%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + A ++ + + L PD YTY ++DGFCK G + + L E +E G
Sbjct: 610 HAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFI 669
Query: 84 PNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS--RTL 141
P++ TL VI LC ++ +A ++ M + G +P T+
Sbjct: 670 PSLTTL------------------GRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTI 711
Query: 142 YD 143
+D
Sbjct: 712 FD 713
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 28/171 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
EA+ V+ M D G PNV +Y I+ +A ++ + + G+ PD TYT
Sbjct: 251 LLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTT 310
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIG 99
++ G+C G+ +E +L E + G +PN T L++ L + + G
Sbjct: 311 LLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKG 370
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
++ T+T N VI LC GK+DKA+ ++ M+ HG L ++ I +D
Sbjct: 371 YVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVD 421
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 29/132 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +AR++ D M + G PN ++ IL + E+L ++ G P+
Sbjct: 67 CDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNK 126
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++ FCK G++++ +L++E + G++P+VV TFN I
Sbjct: 127 VVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVV------------------TFNARI 168
Query: 112 QALCGVGKIDKA 123
ALC GK+ +A
Sbjct: 169 SALCSSGKVLEA 180
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A +V+ M G + + TY I E Y ++ ++ G+ PD
Sbjct: 478 FCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPD 537
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
V Y V+ C+ GR + +L+E +++G++PN+ +
Sbjct: 538 VSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSF 576
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+K M P+ Y + A+ +L +++ G +
Sbjct: 444 CKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTL 503
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ G + E+ L++E ERGV+P+V +NNV+
Sbjct: 504 QTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSI------------------YNNVL 545
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+LC G++ A +L M + G P+ + + LIK
Sbjct: 546 SSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIK 581
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------- 88
G+ P+ YT+ ++ C G ++ EL ++ E+G PN +
Sbjct: 51 GVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKG 110
Query: 89 LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
L L + +G P + +N +I + C GK D A L+ M + G P ++ I
Sbjct: 111 LELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISA 170
Query: 149 L 149
L
Sbjct: 171 L 171
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 25/153 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +++ M G+ PN Y L +A +++ ++ DGL PD
Sbjct: 101 YCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPD 160
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ A + C G+ E + + + + V+ + P IT+N +
Sbjct: 161 VVTFNARISALCSSGKVLEASRIFRD-------------MQIDEVLGLPQ-PNIITYNLM 206
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
+ C G +++A L M + +R Y+
Sbjct: 207 LGGFCKEGMLEEARALFEKMKVSENLMNRESYN 239
Score = 38.9 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK--PDVYTYTAVMDG 60
CN +A ++++ M+ +G + + +Y L++ + K PD+ +Y+ ++ G
Sbjct: 386 CNNGKLDKAIEIVNGMWTHG---SAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISG 442
Query: 61 FCKVGRSNEVMELLNEAIERGVTPN-VVTLIHLHNVIDIGHIPRTI-------------- 105
CK GR E + E + + + P+ + + +H+ G I
Sbjct: 443 LCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKT 502
Query: 106 --TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I L +I + L+ M E G P ++Y+ ++ L
Sbjct: 503 LQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSL 548
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVY 52
+KN FE +ID M + G P+V+ Y + +A +L + G+ P++
Sbjct: 515 SKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNIS 574
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAI 78
+++ ++ FCK + V E+ A+
Sbjct: 575 SFSILIKAFCKACDFSAVDEIFEIAL 600
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P +Y Y ++ K GR + V L + + GV+P T TFN
Sbjct: 19 PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSP------------------ETYTFN 60
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I LC G +D A L M E G P+ + L++
Sbjct: 61 VLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVR 99
>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 805
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A K++D M D G PNV TY L +A ++ N K+ G++PD
Sbjct: 440 FCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPD 499
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++TY ++DG CK GR + + + + +G ++P T T+N +
Sbjct: 500 MHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGY-----------------NLP-TWTYNIM 541
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G +D+A LL M ++G IP Y T+I L
Sbjct: 542 INGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQTIIHAL 580
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 37/163 (22%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL--------KP 49
F+A + M +PNV T+ IL EA +++ + ++ L KP
Sbjct: 369 FKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKP 428
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ +Y ++DGFCK GR + +LL++ +RG PNV IT+N+
Sbjct: 429 NTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNV------------------ITYNS 470
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ ALC +DKA+ L+ + G P Y+TL+ L +Q
Sbjct: 471 LLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCKQ 513
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
D++ G+H N TY IL A ++L ++ + +V Y+ V+DG CK
Sbjct: 285 DHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKD 344
Query: 65 GRSNEVMELLNEAIERGVTPNVVTLIH---LHNVIDIGHIPRTITFNNVIQALCGVGKID 121
+ L +E I + + P VVT H ++ P TFN ++ ALC GKI
Sbjct: 345 KLVIDAYGLYSEMIVKRIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIK 404
Query: 122 KALLLLFLMYE---------HGKIPSRTLYDTLI 146
+A ++ M + H K P+ Y+TLI
Sbjct: 405 EAKNVIIKMVDEALNLFTEMHCK-PNTVSYNTLI 437
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNV--IDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
V+ L + +GV P++ TL L N +G+ P TIT +I+ LC GK+++ALL
Sbjct: 225 VLSLSTQMESKGVKPDLFTLSILINCYYFKMGYEPNTITLTTLIKGLCLNGKVNEALLF 283
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN A +++ M PNV T+ +L EA E++ + G P++
Sbjct: 468 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 527
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY ++DG S E +ELL+ + GV+P++VT + H
Sbjct: 528 ITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHI 587
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V D+G P+ + +N ++ ALC D A+ M +G +P+ Y TLI+ L +
Sbjct: 588 VQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 645
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F +A +V+D M G PN+ TY ++ +A E L + + G +PD
Sbjct: 191 CKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDT 250
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI--- 98
+YT V+ G C R +V EL E +E+ PN VT L I +
Sbjct: 251 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 310
Query: 99 --GH--IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GH T N VI +C G++D A L M +G P Y T++K L
Sbjct: 311 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ EA ++D M G P+V TYT+L +A E+L ++ G P++
Sbjct: 156 CDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNI 215
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY +++G C+ GR ++ E LN G P+ V+ +
Sbjct: 216 VTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAE 275
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ +P +TF+ +++ C G +++A+ +L M HG + TL + +I + +Q
Sbjct: 276 MMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ 333
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 32/155 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A +I+ M ++G N+ TY L A E+ ++ KP+
Sbjct: 401 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNT 457
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C R + ELL E +++ PNVV TFN ++
Sbjct: 458 ITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVV------------------TFNVLV 499
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G +D+A+ L+ M EHG P+ Y+TL+
Sbjct: 500 SFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 534
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC AR++I M P+ TYT + EA +L ++ + G +P
Sbjct: 123 YCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPS 179
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TYT +++ CK + ME+L+E +G TPN+VT +I+ L+
Sbjct: 180 VVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN 239
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P T+++ V++ LC + + L M E +P+ +D L++
Sbjct: 240 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 293
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V++ M +G N T I+ +A++ L N+ + G PD
Sbjct: 295 FCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPD 354
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YT V+ G C+ R + ELL E + + PN +TFN
Sbjct: 355 TISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN------------------EVTFNTF 396
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G I++A +L+ M EHG + Y+ L+
Sbjct: 397 ICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALV 432
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA ++ + G PDVY T ++ C+ GR+++ +L A G +V
Sbjct: 59 LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFA--- 115
Query: 92 LHNVIDIGHI------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+N + G+ P T+ +I+ LC G++ +AL LL M
Sbjct: 116 -YNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174
Query: 134 GKIPSRTLYDTLIKKL 149
G PS Y L++ +
Sbjct: 175 GCQPSVVTYTVLLEAV 190
>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 1430
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ EA + +D M G+ P++ +Y+ + A ++ ++ + G PDV
Sbjct: 542 CDHGRVIEACEFLDNMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFKDLWSHGHCPDV 601
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ ++ G CKV R E +L +E ++RG++P+VV T+N I
Sbjct: 602 VCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSVV------------------TYNLFI 643
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G +DKA+ LF M + K+PS Y TL+
Sbjct: 644 DCWCKNGNVDKAMAHLFRMTKEDKVPSVVTYTTLV 678
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N F EA + + G P+V TY + +A L + + P V
Sbjct: 612 CKVNRFTEAEDLFHELVKRGLSPSVVTYNLFIDCWCKNGNVDKAMAHLFRMTKEDKVPSV 671
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DGFCK R ++ + L E + G PN ITF +I
Sbjct: 672 VTYTTLVDGFCKEERPDDAILLFKEMEKNGCPPN------------------QITFMALI 713
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC + +AL L M + P +Y L+
Sbjct: 714 YGLCKCCRPTEALCYLREMQQKEMKPDSFIYVALL 748
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 30/167 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + +A + M P+V TYT L +A + ++ +G P
Sbjct: 645 CWCKNGNVDKAMAHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEMEKNGCPP 704
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
+ T+ A++ G CK R E + L E ++ + P+ + L
Sbjct: 705 NQITFMALIYGLCKCCRPTEALCYLREMQQKEMKPDSFIYVALLSAYLSDLNLTSAFEIF 764
Query: 93 HNVIDIGHIPRTITFN--NVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++D+G P+ + N V+ A+ K D+ + ++ E GK+P
Sbjct: 765 REMVDLGFFPKPLDKNYPTVVDAILKFCKDDRTSSGIQVLIEEGKLP 811
Score = 42.0 bits (97), Expect = 0.073, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-------EAYEMLMNVKNDGL----KPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+T+++I+ + ++ +++ ND KP + Y ++D CK R + EL
Sbjct: 424 PNITSFSIVIDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYEL 483
Query: 74 LNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCG 116
L E E G+ P T + L + GH P +++ LC
Sbjct: 484 LREMKELGIEPTHFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPWIKHTTLLVKELCD 543
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G++ +A L M + G +P Y I L
Sbjct: 544 HGRVIEACEFLDNMTQQGFLPDIVSYSAAIGGL 576
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 134 FCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 193
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 194 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYK 253
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y LI
Sbjct: 254 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALI 306
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 239 HCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 298
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYTA++DG CK G + E I+ + + V LI L
Sbjct: 299 KITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 358
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ +G P T+ +I C G + K LL
Sbjct: 359 EMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 392
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 46/120 (38%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 275 CKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDD 334
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G + +LL E
Sbjct: 335 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 394
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + + G +PD
Sbjct: 146 FCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + +E EL +E +E+G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P IT+N +I C G + + L+ M G P + Y TLI
Sbjct: 266 QILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLI 318
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 29/148 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D + R +ID M G P+ TYT L A+E + + ++ D
Sbjct: 286 FCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLD 345
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTA++ G CK GRS + ++L E + G+ P+ + T+ V
Sbjct: 346 DVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPD------------------SGTYTIV 387
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPS 138
+ C G ++ LL M G +PS
Sbjct: 388 MNEFCKNGDVNTGSKLLKEMQRDGHVPS 415
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
F RKV+D++ Y V + ILE G +Y + +M FCK G
Sbjct: 101 FDTCRKVLDHLMKLKYFKLVWGFYKEILEC----------GYPASLYFFNILMHRFCKEG 150
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHN------VID-----------IGHIPRTITFN 108
+ + + G+ P+VV+ L N ++D G P T++
Sbjct: 151 EIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYS 210
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC K+D+A L M E G +P+ + TLI
Sbjct: 211 VLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLI 248
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D +A ++ D M NG +PN+ Y L +A E+ ++ L PD
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPD 730
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------------------VVTLIH 91
V TY+ ++DG+CK G E +L +E I +G++P+ ++L H
Sbjct: 731 VVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFH 790
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+G + FN++I + C GK+ +A L M + P+ Y LI
Sbjct: 791 EAQQKSVGSLS---AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILI 842
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C+ +D +A +V+D M NG PNV Y T+++AY E+L + +G+ PD+
Sbjct: 462 CHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDL 521
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
+ Y ++ G C+ + E LL + E+G+ PN T I+L+ +
Sbjct: 522 FCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKD 581
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G +P + + +I+ C VG +AL M E G IP Y +I L +
Sbjct: 582 MLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +V M + G P+ TYT+L EA + ++ + GL P+
Sbjct: 287 CQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNR 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYTA++DGF K G E + + +E I RG+ NVV T+N +I
Sbjct: 347 FTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV------------------TYNAMI 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G++ KA+ L M G P Y+ LI
Sbjct: 389 GGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLI 423
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + EA M + G P++ Y+ + EA + + G+ PD
Sbjct: 601 HCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPD 660
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ Y +++ GFCK G + +L +E + G+ PN+V +N +
Sbjct: 661 VFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIV------------------VYNTL 702
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC +G++ KA L + E +P Y T+I
Sbjct: 703 INGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 36/184 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+ + + M +G +PN TYT L EA + + GLK +
Sbjct: 321 FCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLN 380
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V TY A++ G K G + M L NE + G+ P+ T +N++ G++
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWT----YNLLIDGYLKSHDMAKAC 436
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T++ +I LC + KA +L M +G P+ +Y TLIK
Sbjct: 437 ELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAY 496
Query: 150 DQQP 153
Q+
Sbjct: 497 VQES 500
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + + M G P+ TY +L +A E+L +K L P +TY+ ++
Sbjct: 399 KAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
G C + E+L++ I GV PNV TLI L +I G +
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVL 518
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +N +I LC K+++A +LL M E G P+ Y I
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFI 563
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDV 51
C EA+ ++ M + G PN TY I A ++ + G+ P+
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIH--------------LHN 94
YT ++ G C VG + E + +E+G+ P++ +IH
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLK 651
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P +N++I C G I+KA L M +G P+ +Y+TLI L
Sbjct: 652 FLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGL 706
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 28/144 (19%)
Query: 13 KVIDYMFDNGYHPNVTTYT-ILEAY---------EMLMNVKNDGLKPDVYTYTAVMDGFC 62
KV M + P+V TYT +++A+ +M+++ KP+++TY A + G C
Sbjct: 228 KVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLC 287
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
+ G +E +E+ +E+G+ P+ GH T+ ++ C + +
Sbjct: 288 QTGAVDEALEVKKLMMEKGLGPD-------------GH-----TYTLLVDGFCKQKRSKE 329
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLI 146
A L+ M G P+R Y LI
Sbjct: 330 AKLIFESMPSSGLNPNRFTYTALI 353
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 55/171 (32%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EAR++ D M D PN+ TYTIL EA ++ ++++ + P+
Sbjct: 810 FCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 869
Query: 51 VYTYTAVM-----------------------------------DGFCKVGRSNEVMELLN 75
TYT+++ +CK G+S E ++LLN
Sbjct: 870 TLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLN 929
Query: 76 EAIERGVTPNVVTLIHLHNVID--IGHIPRTITFNNVIQALCGVGKIDKAL 124
+++ G+ +V D I H+ + + V++ L +GK + +L
Sbjct: 930 KSLVEGIKLE-------DDVFDALIFHLCKEKQISTVLELLSEMGKEELSL 973
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA K++D + +G P TYT L ++ML ++ +KP
Sbjct: 552 FCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPT 611
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT V+ G CK GR +E ++LL RG+ P+ IT+N V
Sbjct: 612 QITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPD------------------QITYNTV 653
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IQ+ C + KA L M +H PS Y+ LI L
Sbjct: 654 IQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGL 692
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M NG +P++ TYTIL E++++ + + GLK + TYT ++
Sbjct: 359 AWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLS 418
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
CK GR +E + LL+E G+ P+++T
Sbjct: 419 SLCKSGRIDEAVILLHEMEVIGLKPDLLT 447
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 3 CNKNDF---FEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
C+K + F +I +F+ G I EA +V + ++ Y ++D
Sbjct: 464 CSKRIYPNSFVCSAIISGLFEKG--------AISEAQMYFDSVTKSDVAEEIILYNIMID 515
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G+ K+G E + + IE+G++P +VT FN++I C GK
Sbjct: 516 GYAKLGNIGEAVRSYKQIIEKGISPTIVT------------------FNSLIYGFCKKGK 557
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +A+ LL + HG +P+ Y TL+
Sbjct: 558 LAEAVKLLDTIKVHGLVPTSVTYTTLM 584
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A+ M G P+V +Y IL EA E +++N G++PD
Sbjct: 280 FCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD 339
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRT----- 104
+ TY + +GF +G + +++ + G+ P++VT I + +G+I +
Sbjct: 340 IVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKE 399
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
+T+ ++ +LC G+ID+A++LL M G P Y
Sbjct: 400 KMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS 449
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------- 98
GL PDVY+Y ++ G C G E +E N+ GV P++VT L N I
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGA 359
Query: 99 ----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G P +T+ +I C +G I+++ L M G S Y L+
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419
Query: 149 L 149
L
Sbjct: 420 L 420
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN- 94
+++ +K G+ + YT ++DG C+ R + + L E P+VV+ L +
Sbjct: 220 WDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSG 279
Query: 95 ----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
+I G +P ++N ++ LC G +++AL M HG P
Sbjct: 280 FCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD 339
Query: 139 RTLYDTL 145
Y+ L
Sbjct: 340 IVTYNIL 346
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 29/149 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +D +A ++ + M + P+ TY +L +A +L+ +++ ++
Sbjct: 657 FCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLT 716
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YT ++ C G + ++ +ERG ++ ++ V
Sbjct: 717 KVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIR------------------DYSAV 758
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSR 139
I LC I A +M HG P +
Sbjct: 759 INRLCKRNLITDAKFFFCMMLTHGIPPDQ 787
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA K++D + +G P TYT L ++ML ++ +KP
Sbjct: 560 FCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPT 619
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT V+ G CK GR +E ++LL RG+ P+ IT+N V
Sbjct: 620 QITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPD------------------QITYNTV 661
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IQ+ C + KA L M +H PS Y+ LI L
Sbjct: 662 IQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGL 700
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ + M G ++ TYT+L EA +L ++ GLKPD
Sbjct: 385 HCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPD 444
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------------------------- 85
+ TY+ ++ G CK G E +EL E + + PN
Sbjct: 445 LLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFD 504
Query: 86 ------VVTLIHLHNV---------------------IDIGHIPRTITFNNVIQALCGVG 118
V I L+N+ I+ G P +TFN++I C G
Sbjct: 505 SVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKG 564
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K+ +A+ LL + HG +P+ Y TL+
Sbjct: 565 KLAEAVKLLDTIKVHGLVPTSVTYTTLM 592
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C EA + + M ++G P++ TY IL A++++ + +GL PD+
Sbjct: 316 CVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDL 375
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C++G E +L + + +G+ ++V T+ ++
Sbjct: 376 VTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIV------------------TYTVLL 417
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+LC G+ID+A++LL M G P Y LI L
Sbjct: 418 SSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGL 455
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------- 98
GL PDVY+Y ++ G C G E +E N+ GV P++VT L N I
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGA 359
Query: 99 ----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G P +T+ +I C +G I+++ L M G S Y L+
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419
Query: 149 L 149
L
Sbjct: 420 L 420
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN- 94
+++ +K G+ + YT ++DG C+ R + + L E P+VV+ L +
Sbjct: 220 WDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSG 279
Query: 95 ----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
+I G +P ++N ++ LC G +++AL M HG P
Sbjct: 280 FCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD 339
Query: 139 RTLYDTL 145
Y+ L
Sbjct: 340 IVTYNIL 346
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 29/149 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +D +A ++ + M + P+ TY +L +A +L+ +++ ++
Sbjct: 665 FCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLT 724
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YT ++ C G + ++ +ERG ++ ++ V
Sbjct: 725 KVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIR------------------DYSAV 766
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSR 139
I LC I A +M HG P +
Sbjct: 767 INRLCKRNLITDAKFFFCMMLTHGIPPDQ 795
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K E ++ + G P+V Y L AYE++ ++ + PD
Sbjct: 334 FSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPD 393
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN------------- 94
TY +M GFC +GR +E L++E +RG+ P++V TLI ++
Sbjct: 394 DMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRD 453
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++D G P +T+N +IQ LC + + D A L+ M G P + Y +LI+ L +
Sbjct: 454 EMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTE 512
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ A + + M G V TY +L +AY +L ++ +G PD
Sbjct: 229 YCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPD 288
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------LHN 94
V+TY +++G+CK G + +E+ E ++GV VT LI+ L N
Sbjct: 289 VFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFN 348
Query: 95 V-IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
V + G P + +N +I + C G +++A ++ M + P Y+TL++
Sbjct: 349 VAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMR 402
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 29/137 (21%)
Query: 25 PNVTTYT-----------ILEAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PN TY + A E++ ++ G+ PD YTY ++ G+CK+GR + ++
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204
Query: 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+ +E + +G P + +N +I C VGK+D AL M +
Sbjct: 205 VFDEMLTKGEVA-----------------PSAVMYNALIGGYCDVGKLDVALQYREDMVQ 247
Query: 133 HGKIPSRTLYDTLIKKL 149
G + Y+ L+ L
Sbjct: 248 RGIAMTVATYNLLMHAL 264
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ TY V+ GFC GR +E++ E ERG G P T+
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERG-----------------GIAPDKYTY 186
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
+I C +G+++ A+ + M G++ PS +Y+ LI
Sbjct: 187 ATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALI 226
>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 37/183 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C +F +A ++++ M + G P+ T+ IL +++L ++ DG+ P+
Sbjct: 229 CRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPN 288
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
V TYT+V+ G+CK GR + + + N+ +E G PN VT +NV+ G+
Sbjct: 289 VVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVT----YNVLINGYGKALDMESAV 344
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF+++I C G++D A+ + M +H P+ + +I L
Sbjct: 345 RMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSL 404
Query: 150 DQQ 152
+Q
Sbjct: 405 CKQ 407
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 33/176 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A V + M ++G PN TY +L A M + PD
Sbjct: 299 YCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPD 358
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------------- 91
V T+++++DG+C+ G+ ++ M + E + + PNV T +IH
Sbjct: 359 VVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLR 418
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L+ DI P+T +N VI LC G++++A L++ M E G P + Y LI
Sbjct: 419 ELNMRADIA--PQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILI 472
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-KPDVYTYTAVMDGFCKVGRSNE 69
R++ Y ++N + + +A + + DGL PD +++ V+ G C+VG +
Sbjct: 177 GRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQK 236
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNV----------IDIGH------------IPRTITF 107
+EL+ E G +P+ +T HN+ ++ GH +P +T+
Sbjct: 237 ALELVERMTEFGCSPDTIT----HNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTY 292
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI----KKLDQQ 152
+VI C G+++ AL + M E G P+ Y+ LI K LD +
Sbjct: 293 TSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDME 341
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA ++ +++ G PD YTYT ++ G C GR E + L ++ +E G P+ +T+
Sbjct: 448 EANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITV 503
Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M + G HP+ TYTIL EA + + G +PD
Sbjct: 441 CKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDK 500
Query: 52 YTYTAVMDGFCKVGRSNEVMELL 74
T + + K G NEV +++
Sbjct: 501 ITVNSFISCVLKAGMPNEVDQIM 523
>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia seriphioides]
Length = 414
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 135 FCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPD 194
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + +E EL +E + G+ P VT L
Sbjct: 195 VYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYK 254
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A +L+ M G P + Y TLI
Sbjct: 255 QMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLI 307
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K B +A +I M G P+ TYT L A+E + + ++ D
Sbjct: 276 CKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 335
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E ++ +G P T T+ +I
Sbjct: 336 VAYTALISGLCQEGRSVDAEKMLRE------------------MLSVGXKPDTRTYTMII 377
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + LL M G +PS Y+ L+
Sbjct: 378 NEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ M G +P++ +Y L A ++L +K G P
Sbjct: 131 FCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPV 190
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+ +Y V+DG K G++ E +ELL+E I +G+ P+++T + +
Sbjct: 191 LISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFC 250
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V D+G P + +N ++ LC + A+ L M +G +P+ + Y L++ L
Sbjct: 251 KVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGL 306
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
K++D M D G P++ TY ++ +A E L N+ + G +P+ +Y V+ G
Sbjct: 2 KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRT 104
R + +L+ E +G PNVVT LI L + G P +
Sbjct: 62 FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNS 121
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++N ++ A C K+DKA+ + LM G P Y+TL+ L
Sbjct: 122 LSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTAL 166
>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
Length = 561
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N+F +AR +++ M G P+ +Y+ L A E+ + + + +
Sbjct: 131 YCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGN 190
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYT+TA++ GFCK G +E L ++ +E + PN +TFN +
Sbjct: 191 VYTFTALISGFCKDGNMDEATRLFHKMMESSLVPN------------------EVTFNVM 232
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I+ C VG I KA L M + G P Y +LI
Sbjct: 233 IEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLIS 269
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
+ EA K+ M D G PN TY IL +A M ++ G++ VY Y +
Sbjct: 67 YREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNS 126
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTP----------------NVVTLIHLHNVIDIGH 100
+++G+CK ++ LLNE + +G+TP ++ + + LH +
Sbjct: 127 LINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNA 186
Query: 101 IPRTI-TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ + TF +I C G +D+A L M E +P+ ++ +I+
Sbjct: 187 VSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIE 234
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A ++ D M D G P+ TY L +A E + +++N+ +
Sbjct: 236 YCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEFVADLENNCAVLN 295
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
++ TA+M GFCK G S E+ L E + PN T LH
Sbjct: 296 SFSLTALMHGFCKEG-SAEI--LCKEMLAGHFLPNSYTYNCFLDYLANEGELEKAKVLHA 352
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + T+TFN +I+ C G+I A+ L+ E G P Y T+I +L
Sbjct: 353 AMLEGCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYSTIINEL 407
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D A ++ M N NV T+T L EA + + L P+
Sbjct: 167 CRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNE 226
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
T+ +++G+C+VG + +L ++ ++RG+TP+ T L +V+
Sbjct: 227 VTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLISVV 271
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
I A +++ G PD +Y+ +++ CKVG +N+ EL NE + +G+ P++V
Sbjct: 378 IQGAIDLMQKNTESGFFPDCISYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVA 434
>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
Length = 381
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++ID M G PNV TY ++ +A E+L ++ + G KP+ Y V+ G
Sbjct: 2 ELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGL 61
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRT 104
C + R + ELL+E + PN T+ +L + G
Sbjct: 62 CSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANV 121
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+N VI +C G +D AL LL M G P Y+TL+K L
Sbjct: 122 VTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGL 166
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ + + +A +++ M N P+ T+ IL+A+E+ + G P+
Sbjct: 167 CSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNS 226
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------------------VVTLIHLH 93
TY+ ++ G K G+ + +ELLNE +G + VV ++ H
Sbjct: 227 TTYSTIIGGLAKAGKMEQALELLNEMASKGYNTDKMYQLLTESLNKEDKIEEVVQVV--H 284
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G P+T+ FN V+ LC GK D A+ +L M +G +P Y LI+ L
Sbjct: 285 KLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGL 340
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+ ++ M +G NV TY + A E+L N+++ G KPD+ TY ++ G
Sbjct: 107 RYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGL 166
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
C + + EL+ + + +P +TFN +I LC G I
Sbjct: 167 CSADQWEDAEELMIKMSQNDC------------------LPDNVTFNTIISFLCQKGLIL 208
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A + M E G P+ T Y T+I L
Sbjct: 209 QAFEVFKQMPEKGCNPNSTTYSTIIGGL 236
>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
Length = 499
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D AR V + M + G P+ +YT L EA +++ +K G + D
Sbjct: 304 HCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLEMKQKGCRAD 363
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
V TY V++G C+ GR+ E M+LL GV NV + L N +
Sbjct: 364 VVTYNLVIEGLCRDGRTVEAMDLLESVPLEGVKLNVASYRILMNCLCSRGEMDKAVGLLG 423
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P NN++ LC G+I A + L+ + + G +P ++ L++ +
Sbjct: 424 LMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLADAGFMPEARCWERLVETM 479
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 32/171 (18%)
Query: 11 ARKVIDYMFD---NGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPDVYTYT 55
A KV+D M + PN+ TY+ L EA+E+ ++ D + PD Y
Sbjct: 204 AFKVLDEMREYTCADVKPNLVTYSTLIAGLCRGGKMMEAFELFEEMIEKDRIVPDQLLYN 263
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH--------------NVIDI 98
++DGFC++G+ ++ + + PN TLI+ H + +
Sbjct: 264 VIIDGFCRLGQVDKARAIFGFMKKNDCEPNAFNYATLINGHCKKADIEAARSVFEEMRNA 323
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +++ +I LC G +D+A+ L+ M + G Y+ +I+ L
Sbjct: 324 GVEPDAVSYTALIGCLCRHGSVDEAINLVLEMKQKGCRADVVTYNLVIEGL 374
>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
rugosa]
Length = 414
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 135 FCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 194
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
VYTY+ +++G CK + ++ EL +E + +G+ PN V TLI H
Sbjct: 195 VYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYK 254
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 255 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 307
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 240 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPD 299
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + E I+ + V LI L
Sbjct: 300 KITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLR 359
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 360 EMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++++ M D G+ PNV TY L EA ++ + G PD
Sbjct: 98 CRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDG 157
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
Y ++DGF K G E L E +E+G P V T L +
Sbjct: 158 VVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKD 217
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P TFNN++ C +G + +A L M G P Y+TL++ +
Sbjct: 218 MLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGM 272
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F EAR V M G PNV +Y+IL EA E+L + + G +P+V
Sbjct: 63 CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY +++ G CK+G+ E ++L + + RG P+ V LI
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G IP T+N+++ G+ + L M G +P+ ++ L+
Sbjct: 183 MLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLL 234
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+ K +F + + M G PN+ T+ ++EA+ + + +++ G PD
Sbjct: 202 FSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPD 261
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIH----LH 93
V +Y +M G C G+ +E LL E I GV P++V+ L H +
Sbjct: 262 VVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFY 321
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +++ +I LC GK+ A ++ M +G P + L+
Sbjct: 322 EIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLV 374
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 29/146 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PN TY L EA + + G P+V++Y+ ++ G C+ +
Sbjct: 43 MLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+E ELLNE +ID GH P +T+ +++ LC +GK+ +A+ L
Sbjct: 103 VDEAAELLNE------------------MIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDL 144
Query: 127 LFLMYEHGKIPSRTLYDTLIKKLDQQ 152
M G P +Y+ LI ++
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKK 170
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G P+ Y +L EAY + + G P V
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVI-- 96
+TY +++ GF + G V L + + +G PN+ T ++ H +
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE 252
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+G P +++N +++ +C GK +A LL M G P Y+ LI
Sbjct: 253 MRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILI 304
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C A V M NG P+ L E+ E+ + P
Sbjct: 341 CLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP 400
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
+ Y +M CK RS++V E+ +E ERG +P+V
Sbjct: 401 LIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDV 437
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + D A K M P+V TYT ++EA ++ + GL+PD
Sbjct: 804 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 863
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
T+T +++G+CK G + + N I+ G +PNVV TLI LH
Sbjct: 864 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 923
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ IG P T+N+++ LC G I++A+ L+ G Y TL+
Sbjct: 924 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 976
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G P+ YT L A + + + + PDV
Sbjct: 770 CRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 829
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HN- 94
TYTA++ GFC++G E +L +E +G+ P+ VT L HN
Sbjct: 830 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 889
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+ +I LC G +D A LL M++ G P+ Y++++ L
Sbjct: 890 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 944
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A +++ M+ G PN+ TY I EA +++ + GL D
Sbjct: 910 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 969
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------IHLHNVIDIGH----- 100
TYT +MD +CK G ++ E+L E + +G+ P +VT LH +++ G
Sbjct: 970 VTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 1029
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P TFN++++ C + A + M G P Y+ L+K
Sbjct: 1030 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVK 1082
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
YC + + K+I+ M G PN Y + EA E + G+ PD
Sbjct: 734 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPD 793
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
YT ++DGFCK G + E R +TP+V+T + ++++ G +
Sbjct: 794 TVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFH 853
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++TF +I C G + A + M + G P+ Y TLI L
Sbjct: 854 EMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 909
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 26 NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
NV +Y I+ EA+ +L+ ++ G PDV +Y+ V++G+C+ G ++V +L+
Sbjct: 688 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 747
Query: 75 NEAIERGVTPN------VVTLI-----------HLHNVIDIGHIPRTITFNNVIQALCGV 117
+G+ PN ++ L+ +I G +P T+ + +I C
Sbjct: 748 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 807
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G I A + M+ P Y +I Q
Sbjct: 808 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 841
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTT------------YTILEAYEMLMNVKNDGLKPDVYTYTAV 57
EAR+V + M + G +V + Y A + G+ +V +Y V
Sbjct: 636 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 695
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ C++GR E LL +G TP+V I+++ V+ C
Sbjct: 696 IHFVCQLGRIKEAHHLLLLMELKGYTPDV------------------ISYSTVVNGYCRF 737
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++DK L+ +M G P+ +Y ++I
Sbjct: 738 GELDKVWKLIEVMKRKGLKPNSYIYGSII 766
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C + K++++M G PN TT+ ++++ Y + N+K + G+ PD
Sbjct: 1014 FCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPD 1073
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY ++ G CK E L E +G + +V T
Sbjct: 1074 GKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST 1111
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 36/177 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC + + EA + + M + G HPN + ++++ Y E L ++ G+KPD
Sbjct: 281 YCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPD 340
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI----PR--- 103
V T++ +M+ + G + E+ N+ ++ G+ P+ IH ++++ G++ PR
Sbjct: 341 VVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPD----IHAYSILAKGYVRAGQPRKAE 396
Query: 104 --------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ F +I C GK+D+A L M+E G P+ Y+TLI
Sbjct: 397 SLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLI 453
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C K EA V+ M +G P+V TY T+ AY +++ ++ + +KP+
Sbjct: 211 WCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPN 270
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------HNVID---- 97
T ++ G+CK G E + L E GV PN V L N +D
Sbjct: 271 ERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALT 330
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P +TF+ ++ A G +D + M + G P Y L K
Sbjct: 331 LMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAK 384
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA + N+ +G KP + TYT ++ + R + LL++ + G+ P+
Sbjct: 78 EAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPD-------- 129
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I N +I A GK+D+A+ + M E+G P+ + Y+TLIK
Sbjct: 130 ----------SILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIK 173
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA ++ +K G KP TY ++ GF VGR E M+LL G NV
Sbjct: 148 EAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMM---GQDENVK------ 198
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P T+N +IQA C K+++A +L M G P Y+T+ + Q
Sbjct: 199 --------PNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQ 248
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+++ M P V TYT L A +L + + G+KP+V
Sbjct: 202 CRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNV 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDG CK G S+ +ELL+ + R H+P IT++ ++
Sbjct: 262 FTYSSLMDGHCKSGCSSRALELLDMMVSR------------------RHLPNMITYSTLV 303
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC GK+ +A+ +L M G P LY +I
Sbjct: 304 HGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKII 338
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 29/174 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVY 52
+N A + YM + G P+V + +L A + + N G PD Y
Sbjct: 133 ENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSY 192
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNV 95
TY +++G C++G+ E EL E + +P VVT LIH L +
Sbjct: 193 TYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEM 252
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+++++ C G +AL LL +M +P+ Y TL+ L
Sbjct: 253 ASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGL 306
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 34/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +++D M + PN+ TY+ L EA E+L +K GL+PD
Sbjct: 271 HCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPD 330
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---IHLHNVIDIG----HIPR 103
Y ++ GFC + + +E L+E + G++PN +T + +HN++ G H R
Sbjct: 331 AGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNR 390
Query: 104 TI----------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TF++++ C G + KA L+ M G IP ++ ++
Sbjct: 391 AFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVV 449
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A++V+ M + G PN+ TY ++ EA E+ ++ + GL PD
Sbjct: 225 HCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPD 284
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+YTY +++GFC RS E +L E I+ G+ P +T L
Sbjct: 285 LYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKD 344
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G I +N ++ +C GK++KAL ++ M E G P Y LI+
Sbjct: 345 EMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 398
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + +A ++++ M G +P++ TY IL A + +++ GL P+
Sbjct: 646 CKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNC 705
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-----NVV------------TLIHLHN 94
TY A++DG+CK +LL E + RGV P NV+ L
Sbjct: 706 VTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQE 765
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G T++FN +I+ C GK+ +A LL M E IP+ Y +LI
Sbjct: 766 MLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 816
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +++ M + G P+ TY++L A+E+L +K L P V
Sbjct: 366 CKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTV 425
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------N 94
TY+ +++G C+ G +L E + G+ PN V TL+ H
Sbjct: 426 LTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILER 485
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G +P +N++I C ++++A L M E P+ Y I
Sbjct: 486 MREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 537
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + EA V ++ +V TY++L EA+ + ++ GL P+
Sbjct: 575 HCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPN 634
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TY +++ G CK G ++ +LL E +G+ P++V T+N +
Sbjct: 635 AFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIV------------------TYNIL 676
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G+I++A L + G P+ Y ++
Sbjct: 677 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 712
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----EAYEMLMNVK------NDGLKPD 50
+C EAR + M + PN TY +A EM + + + G+ P+
Sbjct: 505 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 564
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-- 98
V YTA+++G CK G E + + R V +V T LIH +H I
Sbjct: 565 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFS 624
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P T+N++I C G +DKA LL M G P Y+ LI L
Sbjct: 625 ELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL 680
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A+ + D + G PN TY + A+++L + G+ PD
Sbjct: 681 CKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDA 740
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV--TLIH--------------LHNV 95
+ Y +++ CK + + ++L E +E+G V TLI L +
Sbjct: 741 FIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEM 800
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I+ IP +T+ ++I C G + +A L M E +P+ Y +L+
Sbjct: 801 IEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLL 851
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHL 92
PDVYTYT ++ CKVG + +L E E+G +PN+VT I L
Sbjct: 213 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIEL 272
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+++D G +P T++ +I C + +A L+L M + G P Y+ LI +
Sbjct: 273 KRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMR 332
Query: 152 Q 152
Q
Sbjct: 333 Q 333
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVY 52
NK + F KV D M + P+V TYT + +A +L+ + G P++
Sbjct: 194 NKVELF--WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLV 251
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNV 95
TY ++ G C+ +E +EL +++G+ P++ T + L +
Sbjct: 252 TYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEM 311
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
ID+G P IT+N +I G I++A + M G + +++TL+
Sbjct: 312 IDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLL 362
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + ++ M NG PN YT L E+ +L ++ G+ PDV
Sbjct: 436 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 495
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
+ Y +++ GFCK R E L E +ER + PN T + +
Sbjct: 496 FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNE 555
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G +P + +I+ C G + +A + + + Y LI L +
Sbjct: 556 MLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 612
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA +++ M + + PN TYT L EA + + ++ + P
Sbjct: 784 YCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 843
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT+++ G+ +G +EV L E + +G+ P+ +T+ +
Sbjct: 844 AKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD------------------KMTYYVM 885
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I A C G + +A L + G S YD LI+ L
Sbjct: 886 IDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQAL 924
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A +++D M + G PN+ T+ + +A ++ + +GL PD
Sbjct: 202 FCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPD 261
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT----- 104
+Y ++ G+CKVG S+E + + E +G+ P+VVT L H + G++ R
Sbjct: 262 GVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVR 321
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
ITF +I C G +D ALL + M + PS Y+ LI
Sbjct: 322 EMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALI 374
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D A ++ M +NG P+ TY+ L +A+ + N+ + GL+PD
Sbjct: 412 YCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPD 471
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT+++DG CK G + L +E ++ GV P+VVT ++ +
Sbjct: 472 EVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVT------------------YSVL 513
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I L + +A LLF +Y +P+ YD L++
Sbjct: 514 INGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMR 550
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A + M P+V Y L EA E++ ++ G+KPD
Sbjct: 342 FCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPD 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY+ ++ +CK G ++ +L + +E GV P+ +T L
Sbjct: 402 VVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFK 461
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
N+I +G P +T+ ++I C G +++AL L M + G +P Y LI L +
Sbjct: 462 NMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSK 519
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+ D M +G PNV TY IL EA +L +++ G P+ TY ++
Sbjct: 141 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVA 200
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
FC+ G + L++ E G+ PN+V TFN+V+ +C G+
Sbjct: 201 AFCRAGEVDRAERLVDMMREGGLKPNLV------------------TFNSVVNGICKAGR 242
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ A + M + G P Y+TL+
Sbjct: 243 MEDARKVFDEMVKEGLAPDGVSYNTLV 269
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 32/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V+ M G PN TY L A ++ ++ GLKP++
Sbjct: 168 CGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNL 227
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI--- 98
T+ +V++G CK GR + ++ +E ++ G+ P+ V+ L H + +
Sbjct: 228 VTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAE 287
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG----KIPSRTLYDTLIKK 148
G +P +TF ++I +C G +++A+ L+ M E G +I L D KK
Sbjct: 288 MTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKK 345
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A ++ M + G N T+T L +A + ++ ++P V
Sbjct: 308 CKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSV 367
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y A+++G+C VGR +E EL+ E +GV P+VVT ++ ++
Sbjct: 368 VCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVT------------------YSTIL 409
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
A C G A L M E+G +P Y +LI+ L ++
Sbjct: 410 SAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEE 450
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N+ +A + + M G NV +Y I+ EA ++ + + + PD
Sbjct: 448 YCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPD 507
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY++++DG CK GR + +EL++E RG P++ IT+N++
Sbjct: 508 VITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDI------------------ITYNSI 549
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ ALC +DKA+ LL + G P Y L+K L Q
Sbjct: 550 LDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQS 591
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A + + M P+V T++IL EA +L + +KPD
Sbjct: 378 FCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPD 437
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
V TY+++MDG+C V N+ + N RGVT NV + I ++ I +
Sbjct: 438 VVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFK 497
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT++++I LC G+I AL L+ M+ G+ P Y++++ L
Sbjct: 498 EMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDAL 553
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C A +++D M G P++ TY +IL+A +L +K G++PD+
Sbjct: 519 CKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDM 578
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C+ G+ + ++ + + +G +V + +I
Sbjct: 579 NTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVY------------------AYTVMI 620
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
Q C G D+AL LL M E+G IP Y+ +I L ++
Sbjct: 621 QGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEK 661
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 32/175 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LK 48
+C K +A D + G+H + +Y L A E+L +NDG ++
Sbjct: 273 FCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLR--RNDGKLVQ 330
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI 98
PDV Y ++DG CK N+ +L +E + + + P+V T LI L + ID+
Sbjct: 331 PDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDL 390
Query: 99 GH-------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ IP TF+ ++ C G I +A +L +M + P Y +L+
Sbjct: 391 FNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLM 445
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +ARKV + + GY+ +V YT++ EA +L ++ +G PD
Sbjct: 589 CQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDA 648
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TY ++ + ++ +LL E I RG+
Sbjct: 649 KTYEIIILSLFEKDENDMAEKLLREMIMRGL 679
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 30/133 (22%)
Query: 23 YHPN-VTTYTILEAYEMLM-----NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
YH + +L+++E+ + + +G +PD T T + GFC G+ ++ +
Sbjct: 229 YHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQAL----- 283
Query: 77 AIERGVTPNVVTLIHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
H H+ VI +G +++ +I LC VG+ AL L L GK
Sbjct: 284 --------------HFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALEL--LRRNDGK 327
Query: 136 I--PSRTLYDTLI 146
+ P +Y+T+I
Sbjct: 328 LVQPDVVMYNTII 340
>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 412
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 28/174 (16%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPDVY 52
N+ + EA+ V+ M G +PN TY ++++ Y ++ V N G+ +V+
Sbjct: 147 NEGNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVW 206
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI---------------- 96
+Y +++GFCK+ ++E M L E R + P+VVT L N +
Sbjct: 207 SYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEM 266
Query: 97 -DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G P IT+++++ ALC ++DKA+ LL + + G P+ Y LI L
Sbjct: 267 HDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGL 320
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 33/160 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K++D M D G P++ TY+ L +A +L N+K+ G++P++
Sbjct: 251 CKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNM 310
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIHLHNVIDIGHIPRTITFNN 109
YTYT ++DG CK GR + + + + +G +T N T++
Sbjct: 311 YTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVM------------------- 351
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C G D+AL LL M ++ P+ Y+ +I+ L
Sbjct: 352 -IHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRSL 390
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + FFEA ++ D M G PN TY + A +M + G PD
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V+T+T ++DG+C R ++ MELL+E RG+ N V TLIH
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+I G P +T N ++ LC GK+ AL + M
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAM 489
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 25/150 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID + +G H + ++ + + +++ G+ P++ TY ++ GFC GR + L
Sbjct: 259 IIDGLCKDGRHSD--------SHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRL 310
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L E +ER ++PNVVT L N ++ G IP TIT+N++I C
Sbjct: 311 LQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 370
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D A + +LM G P + TLI
Sbjct: 371 QDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + +PNVV TFN +I C G++D L L
Sbjct: 563 ATQMFVSMGSKSFSPNVV------------------TFNTLINGYCKAGRVDDGLELFCE 604
Query: 130 MYEHGKIPSRTLYDTLI 146
M G + +Y TLI
Sbjct: 605 MGRRGIVADAIIYITLI 621
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A++++ M + PNV TY L EA E+ + G+ P+
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TY +++DGFCK R + ++ +G +P+V T LH
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + T+T+N +I C VG ++ AL L M G P +TL+ L
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G PN+ TY + A +L + + P+V TY A+++ F K G+
Sbjct: 279 MQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGK 338
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI-----------GHIPRTITFNN 109
E EL +E + RG+ PN +T + + +D G P TF
Sbjct: 339 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I CG +ID + LL M G + + Y+TLI
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C+ + A + G HP+V T+T L EA ++ + +P
Sbjct: 125 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRP 180
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
DV T+T +M+G C+ GR E + LL+ +E G+ P+ +T L L
Sbjct: 181 DVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLL 240
Query: 93 HNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I HI P + ++ +I LC G+ + L M + G P+ Y+ +I
Sbjct: 241 RKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 41/185 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +++ M G N TY L A ++ + + G+ PD
Sbjct: 403 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER------------GVTPNVVT-------LIH 91
+ T ++DG C G+ + +E+ +A+++ GV P+V+T LI+
Sbjct: 463 IVTCNTLLDGLCDNGKLKDALEMF-KAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521
Query: 92 LHNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
++ G +P TIT++++I LC ++D+A + M P+
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 581
Query: 142 YDTLI 146
++TLI
Sbjct: 582 FNTLI 586
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVI 96
++ D+Y++T ++ FC + + + + G+ P+VV TL+H + +
Sbjct: 112 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL 171
Query: 97 DIGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D+ H P +TF ++ LC G++ +A+ LL M E+G P + Y T + +
Sbjct: 172 DLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGM 227
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + FFEA ++ D M G PN TY + A +M + G PD
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V+T+T ++DG+C R ++ MELL+E RG+ N V TLIH
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+I G P +T N ++ LC GK+ AL + M
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAM 489
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 25/150 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID + +G H + ++ + + +++ G+ P++ TY ++ GFC GR + L
Sbjct: 259 IIDGLCKDGRHSD--------SHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRL 310
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L E +ER ++PNVVT L N ++ G IP TIT+N++I C
Sbjct: 311 LQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 370
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D A + +LM G P + TLI
Sbjct: 371 QDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + +PNVV TFN +I C G++D L L
Sbjct: 563 ATQMFVSMGSKSFSPNVV------------------TFNTLINGYCKAGRVDDGLELFCE 604
Query: 130 MYEHGKIPSRTLYDTLI 146
M G + +Y TLI
Sbjct: 605 MGRRGIVADAIIYITLI 621
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A++++ M + PNV TY L EA E+ + G+ P+
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TY +++DGFCK R + ++ +G +P+V T LH
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + T+T+N +I C VG ++ AL L M G P +TL+ L
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G PN+ TY + A +L + + P+V TY A+++ F K G+
Sbjct: 279 MQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGK 338
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI-----------GHIPRTITFNN 109
E EL +E + RG+ PN +T + + +D G P TF
Sbjct: 339 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I CG +ID + LL M G + + Y+TLI
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 435
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C+ + A + G HP+V T+T L EA ++ + +P
Sbjct: 125 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRP 180
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
DV T+T +M+G C+ GR E + LL+ +E G+ P+ +T L L
Sbjct: 181 DVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLL 240
Query: 93 HNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I HI P + ++ +I LC G+ + L M + G P+ Y+ +I
Sbjct: 241 RKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 41/185 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +++ M G N TY L A ++ + + G+ PD
Sbjct: 403 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER------------GVTPNVVT-------LIH 91
+ T ++DG C G+ + +E+ +A+++ GV P+V+T LI+
Sbjct: 463 IVTCNTLLDGLCDNGKLKDALEMF-KAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521
Query: 92 LHNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
++ G +P TIT++++I LC ++D+A + M P+
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 581
Query: 142 YDTLI 146
++TLI
Sbjct: 582 FNTLI 586
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVI 96
++ D+Y++T ++ FC + + + + G+ P+VV TL+H + +
Sbjct: 112 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL 171
Query: 97 DIGHI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D+ H P +TF ++ LC G++ +A+ LL M E+G P + Y T + +
Sbjct: 172 DLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGM 227
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFD---NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C++ EAR+++ M D + P+V +Y I+ +AY + + + G+
Sbjct: 166 CDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVS 222
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------------- 92
PDV TY ++DG CK + ++ + +E+GV PN VT +
Sbjct: 223 PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P +T+N +I LC +D+A + M + G P Y+T+I L
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGL 340
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A V M D G PN TY L E + + + L+PDV
Sbjct: 376 CKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDV 435
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------------TLIHLHNVIDI 98
+TY ++D CK G+ NE L + I +G+ P+V L +H+++++
Sbjct: 436 FTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNL 495
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN VI A ID+ + + M + G P+ Y TLI L
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDAL 550
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYE----------MLMNVKNDGLKPD 50
Y K E +++ M NG PN + T++ AY + + +K GL P+
Sbjct: 480 YGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPN 539
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY ++D CK+GR ++ + N+ I GVTPN V L
Sbjct: 540 VVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFL 599
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P + FN V+ LC G++ +A L+ M G P Y+TLI
Sbjct: 600 EMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLI 652
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EAR++ID M G P+V +Y L EA ++L + + GLKP++
Sbjct: 621 CKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNI 680
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y ++ G+CK GR + L E + +GVTP V T+N ++
Sbjct: 681 VSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVE------------------TYNTIL 722
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L G+ +A L M + K+ S Y ++
Sbjct: 723 NGLFRSGRFSEARELYVNMIKSRKLWSICTYSIIL 757
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + + + ++ M + G P++ + ++EA ++ ++ GLKPDV
Sbjct: 586 CTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDV 645
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y ++DG C R +E ++LL+ + G+ PN+V+ +N ++
Sbjct: 646 ISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVS------------------YNTLL 687
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G+ID A L M G P Y+T++ L
Sbjct: 688 HGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGL 725
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 67/172 (38%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDV 51
C A V M D G P+ TY I +A + + + G+KPD
Sbjct: 306 CKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDN 365
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TYT ++DG CK + + + I++GV PN T +H + G
Sbjct: 366 LTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKE 425
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ ++ LC GK ++A L M G PS T+Y ++
Sbjct: 426 MSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIML 477
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 31/175 (17%)
Query: 6 NDFF---EARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
N FF + K + G P+V TY TI++ A ++ + G+KP+
Sbjct: 201 NGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNN 260
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY ++DG CK + + + +++GV P+ VT +
Sbjct: 261 VTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQ 320
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ID G P +T+N +I LC IDKA + M + G P Y +I L
Sbjct: 321 MIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGL 375
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLN---EAIERGVTPNVVTLIHLHN-------- 94
G + V +Y ++ G C R+ E ELL+ + + +P+VV+ + N
Sbjct: 150 GCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQV 209
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+++G P +T+N +I LC ++D+A + M E G P+ Y+T+I
Sbjct: 210 DKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDG 269
Query: 149 L 149
L
Sbjct: 270 L 270
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 42/186 (22%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ ++ D EA K++D M G PN+ +Y L AY + + G+ P
Sbjct: 656 CFASRMD--EAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTP 713
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------------------- 88
V TY +++G + GR +E EL I+ ++ T
Sbjct: 714 GVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIF 773
Query: 89 --LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + +DI ITFN +I L G+ + A+ L + +G +PS Y +
Sbjct: 774 QSLCSMDLQLDI------ITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIA 827
Query: 147 KKLDQQ 152
+ L ++
Sbjct: 828 ENLIEE 833
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EAR++ M + ++ TY+I+ EA+++ ++ + L+ D+ T+
Sbjct: 731 FSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNI 790
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
++DG K GR + M+L G+ P+VV T+ + + L
Sbjct: 791 MIDGLFKGGRKEDAMDLFAAIPANGLVPSVV------------------TYRLIAENLIE 832
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +++ L +M + G P+ + + LI+KL
Sbjct: 833 EGSLEELDCLFSVMEKSGTAPNSHMLNALIRKL 865
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + + E + ++ + GL+P+V TYT ++D FCK +L + G T
Sbjct: 177 HALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCT 236
Query: 84 PNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
PNV+T L H ++D G P TI++N +I+ LC +G + AL
Sbjct: 237 PNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDF 296
Query: 127 LFLMYEHGKIPSRTLYDTLI 146
M + +P+ T Y TL+
Sbjct: 297 FNSMKRNALLPNATTYSTLV 316
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 34/179 (18%)
Query: 8 FFEARKVID------YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
FFE KV D +M D G+ P+ +Y +L A + ++K + L P+
Sbjct: 249 FFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPN 308
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
TY+ ++DGF G + M + NE G PNVV ++ +V+ +
Sbjct: 309 ATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLID 368
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+TFN +I LC G++ +AL + M +G P+ Y+ L+ L ++
Sbjct: 369 KMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFRE 427
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAYEMLMNVKNDG-----LKPDVYTYTA 56
C + ARK++D M G HP+ V+ TI+ L V+ P +Y A
Sbjct: 115 CQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNA 174
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIG 99
V+ C R EV ++NE ++RG+ PNVVT L ++ +G
Sbjct: 175 VVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMG 234
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF +++ GK+ AL + M + G PS Y+ LI+ L
Sbjct: 235 CTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGL 284
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A V M NG HPN TY L +A+ M++ + N+G + +
Sbjct: 390 CDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSL 449
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------LHNV 95
TY V++ C++ M LL + +G+ P+ T +IH L
Sbjct: 450 VTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQ 509
Query: 96 IDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ + PR + + +I LC GK+ A++ L M G P+ ++ L++ +
Sbjct: 510 MNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 564
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
N++ G+ P+VYTY ++ C+ R + ++L+E +G P+ V+ H I G
Sbjct: 94 NMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVS----HGTIVSGM 149
Query: 101 ----------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
+P ++N V+ ALCG ++ + ++ M + G P+ Y T
Sbjct: 150 CKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTT 209
Query: 145 LI 146
++
Sbjct: 210 IV 211
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E + D M G+ PNV TY L A +L +++ +PDV
Sbjct: 149 CVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDV 208
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI------ 101
YT+++D CK + + L +E I +G++P++ T LIH L N+ + H+
Sbjct: 209 VVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNE 268
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + F+ V+ ALC GK+ +A ++ +M + G P+ Y+ L+
Sbjct: 269 MVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALM 320
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G P++ TY L +L + N + P+V
Sbjct: 219 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 278
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----------NVIDI 98
++ V+D CK G+ E ++++ I+RGV PNVVT L+ H V D
Sbjct: 279 VIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 338
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P ++++ +I C + +I+KA+ L M IP+ Y TL+ L
Sbjct: 339 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 393
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +++ EA KV D M G+ P+V +Y+ L +A + + L P+
Sbjct: 323 HCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPN 382
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
TY+ +M G C VGR + + L +E + RG P+ V+ I L
Sbjct: 383 TVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLK 442
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ ++ P + VI +C G+++ A L + G P+ Y +I L QQ
Sbjct: 443 AIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQ 501
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN+ T IL A+ +L + G +P++ T+ ++ G C G+ EV
Sbjct: 98 GIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEV 157
Query: 71 MELLNEAIERGVTPNVVT----------------LIHLHNVIDIGHI-PRTITFNNVIQA 113
+ L ++ I G PNVVT I L ++ G+ P + + ++I +
Sbjct: 158 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDS 217
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC ++ +A L M G PS Y++LI L
Sbjct: 218 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHAL 253
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + G HPNV TYTI+ EA ++ +K G P+
Sbjct: 464 CRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNG 523
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + GF + + ++LL E + RG + +V T
Sbjct: 524 CTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 560
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M G P+ +Y IL EA +L ++ + PD+
Sbjct: 394 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDI 453
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT V+DG C+ G +L + +G+ PNV T+ +I
Sbjct: 454 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNV------------------WTYTIMI 495
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G + +A L M G P+ Y+ + +
Sbjct: 496 NGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITR 531
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------IHLHN------- 94
P + +T ++ K+ + V+ L ++ G+ PN+ TL HL
Sbjct: 66 PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +GH P TFN +I+ LC GKI + L L M G P+ Y TLI L
Sbjct: 126 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGL 183
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 31/166 (18%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
F+ R+V M G +P+ TY ++ +A + + +DGL+PD TYT +
Sbjct: 503 FQLREV---MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCL 559
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGH 100
+ C+ G E +LLN + G+ P+VVT L+H ++D+G
Sbjct: 560 IHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGI 619
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+N +I ALC G+ A M E G P++ Y LI
Sbjct: 620 EPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLI 665
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + A M D G PN TY +L A+ + GL P+
Sbjct: 599 CRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNK 658
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
YTYT ++DG C+ G + + L E + G+ P+ T L D GH+ I +
Sbjct: 659 YTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDEGHMYHAIEY 714
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V TY L EA +L +++ GL P V TY ++DG+C++G E
Sbjct: 373 GLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEA 432
Query: 71 MELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQA 113
L E +E+G P+V T L N ++ G P +N I A
Sbjct: 433 RRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICA 492
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A L +M G P Y+ +I L
Sbjct: 493 ELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGL 528
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 22/128 (17%)
Query: 23 YHPNVTTYT----ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78
Y+P +T + +A + M ++N+G+ P V TY A++ G K ++ E
Sbjct: 311 YNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMR 370
Query: 79 ERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
G+ P+V IT+N+++ C G + +AL LL + G P+
Sbjct: 371 AMGLLPDV------------------ITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPT 412
Query: 139 RTLYDTLI 146
Y+TLI
Sbjct: 413 VLTYNTLI 420
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-------VTPNVVTLI-----HLHN 94
++P + TY ++D F K GR +E LL E +G VT NVV HL N
Sbjct: 233 VEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLEN 292
Query: 95 VIDIGHIPR------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ + R + T+N +I AL G + KA L M G +P+ Y+ +I
Sbjct: 293 AVKLVDSMRLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHG 352
Query: 149 L 149
L
Sbjct: 353 L 353
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 28/151 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C F +A ++I M G+ P+ +TY+ + +A+ + +K +G+ P
Sbjct: 427 CLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVP 486
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----NVIDI---- 98
VYTYT ++D FCK G + +E + TPNVVT LIH + V D
Sbjct: 487 SVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLF 546
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKA 123
G P +T+ +I C G+IDKA
Sbjct: 547 EMMLLEGSKPNVVTYTALIDGHCKAGQIDKA 577
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY L EA+E+L + +G +P+ Y A++DGFCK G+ E+
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEV 666
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
+ ERG PN+ T L N +++ P + + ++I LC
Sbjct: 667 FVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCK 726
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VGK ++A L+ M E G P+ Y +I
Sbjct: 727 VGKTEEAYRLMLKMEEVGCYPNVITYTAMI 756
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 67/175 (38%), Gaps = 45/175 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------------------EAYE 37
Y F+A K+ + M G PNV TYT L E+ +
Sbjct: 533 YLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSD 592
Query: 38 MLMNVK---NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
+ M K ND P++ TY A++DG CK R E ELL+ G PN
Sbjct: 593 IDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPN--------- 643
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I ++ +I C GK++ A + M E G P+ Y +LI L
Sbjct: 644 ---------QIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSL 689
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
KV+ M +N PNV YT + EAY +++ ++ G P+V TYTA++DGF
Sbjct: 700 KVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGF 759
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K+G+ + +EL + +G PN IT+ +I C G +D
Sbjct: 760 GKIGKIEQCLELYRDMCSKGCAPNF------------------ITYRVLINHCCSTGLLD 801
Query: 122 KALLLL 127
+A LL
Sbjct: 802 EAHRLL 807
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EA +++D M NG PN Y L A E+ + + G P++
Sbjct: 620 CKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNL 679
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
YTY+++++ K R + V+++L++ +E TPNVV + + +
Sbjct: 680 YTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLK 739
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++G P IT+ +I +GKI++ L L M G P+ Y LI
Sbjct: 740 MEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLI 791
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++D M PNV TY IL +L + +G P+
Sbjct: 283 CEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNR 342
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV------------------TLIHL- 92
+ +++ +CK + +L + I+ G P + L+ L
Sbjct: 343 EMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELA 402
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+G + + +N + LCG GK DKA ++ M G +P + Y +I
Sbjct: 403 EKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVI 460
Score = 41.6 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------EAYEMLMN 41
YC D+ A K+ M G P Y I +AY +++
Sbjct: 352 YCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLD 411
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
+ K +V + + C G+ ++ E++ E + +G P+
Sbjct: 412 LGVVLNKVNVSNFARCL---CGAGKFDKAFEIICEMMSKGFVPD---------------- 452
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++ VI LC K++KA LL M ++G +PS Y LI
Sbjct: 453 --DSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILI 495
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 31/155 (20%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D GY + TTY L A+ + + N G + D T CK GR
Sbjct: 198 DFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCG 257
Query: 69 EVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDIGHIPRTITFNNVI 111
+ + LL + P+ V + L + I IP +T+ ++
Sbjct: 258 DALSLLE---KEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILL 314
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G G++ + +L +M G P+R ++++L+
Sbjct: 315 SGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLV 349
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+ V M PN+ TY L +A + + G+ PD
Sbjct: 289 FCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPD 348
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V++Y+ ++ GFCK+ +E M+L E + + P+VVT L +
Sbjct: 349 VHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIG 408
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G P IT+N+++ ALC +DKA+ LL + +H PS Y+ LI L
Sbjct: 409 EMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGL 464
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P V TY L +A +L + + + P VYT++ ++D FCK G+ E +
Sbjct: 242 PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNV 301
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
+++ V PN+VT L N + IG P +++ +I C
Sbjct: 302 FVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCK 361
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +D+A+ L M+ P Y++LI L
Sbjct: 362 IKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGL 394
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A D + G+ N +Y L A EML + ++ DV
Sbjct: 150 CLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDV 209
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDIGHI 101
Y ++DG CK N+ + +E + + + P VVT + L + I + H
Sbjct: 210 VMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHK 269
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TF+ ++ A C GK+ +A + +M + P+ Y++L+
Sbjct: 270 MILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLM 321
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K+I M D G PN+ TY L +A E+L +K+ ++P V
Sbjct: 395 CKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSV 454
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY +++G CK GR + ++ + + G +V T
Sbjct: 455 CTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYT 491
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ ++ ++ L++ KN P + + ++ K + V+ L + G+ N+VTL
Sbjct: 50 HNLVSSFNHLLHQKNP--TPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTL 107
Query: 90 IHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKAL----LLLF 128
L N++ G+ P IT +I+ LC G I KAL +L
Sbjct: 108 SILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLA 167
Query: 129 LMYEHGKIPSRTLYDTLIK 147
L ++ ++ RTL + L K
Sbjct: 168 LGFQLNQVSYRTLINGLCK 186
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A +++ + D+ P+V TY IL +A ++ +V +G DV
Sbjct: 430 CKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDV 489
Query: 52 YTYTAVMDGFCKVG 65
YTY ++ GFCK G
Sbjct: 490 YTYNTMIKGFCKKG 503
>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 27/173 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY------EMLMNVKNDGLKPDVYTY 54
YC K F +A KV+D M +N PN TY I+EAY ++N+ +D L+
Sbjct: 321 YCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPS 380
Query: 55 TA----VMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH-------------LHN 94
+A V+D C+ G+ EL + +++ TP+ TLIH L +
Sbjct: 381 SALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFD 440
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G IP T+T+N +I +C G++ +A L M E G +P+ Y+ LIK
Sbjct: 441 EFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIK 493
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C KND A +V++ M G+ PNV TYT IL Y + + + G PD
Sbjct: 252 CKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDP 311
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TYT +MDG+CK GR + +++++E E V PN VT L L +
Sbjct: 312 TTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDD 371
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ +IP + VI LC GK++ A L + + P + TLI L
Sbjct: 372 MLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWL 426
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +EARK+ D F+ G P+ TY L EA + N+ G P+
Sbjct: 427 CKEGKVWEARKLFD-EFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNA 485
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+TY ++ GFCKVG + E + ++ E ++ G PN T
Sbjct: 486 FTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKAT 522
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------- 92
K G+ P+V+T ++ CK + + +L E G PNVVT +
Sbjct: 233 KKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDM 292
Query: 93 -------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++D G +P T+ ++ C G+ A+ ++ M E+ P+ Y +
Sbjct: 293 VGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVI 352
Query: 146 IK 147
I+
Sbjct: 353 IE 354
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N F EA ++D M + G PNV Y + A E+ ++ G+ D
Sbjct: 695 FCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVAD 754
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHNVIDIGHI-- 101
TY ++ G C GR + LL + ++R + PNV+ T + N+++ ++
Sbjct: 755 AVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYK 814
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N++I C G++ A + LM G P Y+TLI
Sbjct: 815 EMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLI 867
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C C D A ++++ M G ++ TY L +A +L ++ +
Sbjct: 179 CLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRIN 238
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNV 95
PDV+T+TA++D F K G +E EL + ++ + PN VT L H
Sbjct: 239 PDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKT 298
Query: 96 IDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
D+ G P +T+N +I C +++ + L MY G + Y+TLI
Sbjct: 299 FDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLI 353
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A+K D M G PNV TY L + ++ + +GL D
Sbjct: 287 CMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDT 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRT------ 104
+TY ++ G+C+VG+ ++ + + GVTP+++T I LH + G I
Sbjct: 347 FTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFND 406
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +N +I LC K+++A L + G P Y +I L
Sbjct: 407 MRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGL 461
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + D M G P+V TY L + ++ + + GL D
Sbjct: 835 FCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGD 894
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT----- 104
+TY ++ G+C+ G+ N ++ N ++ GV P++VT I L + + G I +
Sbjct: 895 AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVE 954
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IT+N +IQ +C K+ +A L + G Y T+I L
Sbjct: 955 DLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGL 1010
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------- 94
++N G+ D+Y++T ++ FC+ R + + LL + ++ G P++VTL L N
Sbjct: 641 MENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNR 700
Query: 95 ----------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
+ ++G P + +N VI LC ++ AL + + M + G + Y+T
Sbjct: 701 FQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNT 760
Query: 145 LIKKL 149
LI L
Sbjct: 761 LISGL 765
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 64/210 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + A ++ M GY P++ T+ L +A+ ++ ++ G +P
Sbjct: 109 CFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEP 168
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERG---------------------------- 81
+V Y ++D CK G N +ELLNE ++G
Sbjct: 169 NVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARI 228
Query: 82 --------VTPNVVTLIHLHNV-IDIGHI----------------PRTITFNNVIQALCG 116
+ P+V T L + + G++ P T+T+N++I LC
Sbjct: 229 LRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCM 288
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++ A LM G P+ Y+TLI
Sbjct: 289 HGRLYHAKKTFDLMASKGCFPNVVTYNTLI 318
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH 91
A +L + G +P + T ++++GFC+ R E + L++ E G+ PNVV T+I+
Sbjct: 669 ALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVIN 728
Query: 92 -------LHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L+N ++I G + +T+N +I LC G+ A LL M + P
Sbjct: 729 GLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDP 788
Query: 138 SRTLYDTLI 146
+ + LI
Sbjct: 789 NVIFFTALI 797
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + + EA+ + M HPN+ TY L +A M + + G PD
Sbjct: 800 FVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPD 859
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++ GFCK R + M+L E +G+ + T+N +
Sbjct: 860 VVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGD------------------AFTYNTL 901
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C GK++ A + M + G P Y+ L+
Sbjct: 902 IHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILL 937
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A+KV + M D G P++ TY IL +A M+ +++ + + D
Sbjct: 905 YCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVD 964
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++ G C+ + E L +GV + + I +
Sbjct: 965 IITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYI------------------TM 1006
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I LC G +A L M E G +PS +YD ++
Sbjct: 1007 ISGLCRNGLRREADKLCTRMKEDGFMPSERIYDETLR 1043
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 18/122 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNV 95
G+ D+Y++T ++ FC+ R + + +L + ++ G P++VT L+H +H+
Sbjct: 95 GISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDA 154
Query: 96 IDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL-YDTLIK 147
+ G+ P + +N +I LC G ++ AL LL M + G++ + + Y+TL+
Sbjct: 155 FSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLT 214
Query: 148 KL 149
L
Sbjct: 215 GL 216
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
EA+E+ + +G+KPD TYT ++ G CK G E EL E G+
Sbjct: 434 EAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN +A +++ + N ++ TY I+ EA+ + ++ G+K
Sbjct: 939 CLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKL 998
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
D Y ++ G C+ G E +L E G P+
Sbjct: 999 DAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPS 1034
>gi|242045394|ref|XP_002460568.1| hypothetical protein SORBIDRAFT_02g030880 [Sorghum bicolor]
gi|241923945|gb|EER97089.1| hypothetical protein SORBIDRAFT_02g030880 [Sorghum bicolor]
Length = 389
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K A ++D M G + YT + EAY +L ++ G+ PD+
Sbjct: 198 CRKAQVRTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCLMRGRGVSPDI 257
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
Y V+ G C+ GR + +++ + +E G TPN VT +L +
Sbjct: 258 VHYNTVIVGMCREGRPLDACKVVGDMMESGCTPNAVTYATVVNGLCVSGLYDKAETYLVD 317
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G +P F++VI+ C VGK+++A ++ M + G +P + ++I+
Sbjct: 318 MVGKGLVPHFSVFHSVIKGCCTVGKVEEAAQIMSWMLDLGVVPHVESWSSVIR 370
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
+ + +++ + PD TY + C+ + LL+E + RG+ +
Sbjct: 171 SLSLFHRLRSLHVSPDADTYRILTQSLCRKAQVRTAATLLDEMLHRGIPAD--------- 221
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + V+ ALC ++ +A LL LM G P Y+T+I
Sbjct: 222 ---------PLAYTTVLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVI 264
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E + D M G+ PNV TY L A +L +++ +PDV
Sbjct: 140 CVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDV 199
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI------ 101
YT+++D CK + + L +E I +G++P++ T LIH L N+ + H+
Sbjct: 200 VVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNE 259
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + F+ V+ ALC GK+ +A ++ +M + G P+ Y+ L+
Sbjct: 260 MVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALM 311
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G P++ TY L +L + N + P+V
Sbjct: 210 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 269
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----------NVIDI 98
++ V+D CK G+ E ++++ I+RGV PNVVT L+ H V D
Sbjct: 270 VIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 329
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P ++++ +I C + +I+KA+ L M IP+ Y TL+ L
Sbjct: 330 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 384
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +++ EA KV D M G+ P+V +Y+ L +A + + L P+
Sbjct: 314 HCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPN 373
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
TY+ +M G C VGR + + L +E + RG P+ V+ I L
Sbjct: 374 TVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLK 433
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ ++ P + VI +C G+++ A L + G P+ Y +I L QQ
Sbjct: 434 AIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQ 492
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN+ T IL A+ +L + G +P++ T+ ++ G C G+ EV
Sbjct: 89 GIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEV 148
Query: 71 MELLNEAIERGVTPNVVT----------------LIHLHNVIDIGHI-PRTITFNNVIQA 113
+ L ++ I G PNVVT I L ++ G+ P + + ++I +
Sbjct: 149 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDS 208
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC ++ +A L M G PS Y++LI L
Sbjct: 209 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHAL 244
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + G HPNV TYTI+ EA ++ +K G P+
Sbjct: 455 CRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNG 514
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + GF + + ++LL E + RG + +V T
Sbjct: 515 CTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 551
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M G P+ +Y IL EA +L ++ + PD+
Sbjct: 385 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDI 444
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT V+DG C+ G +L + +G+ PNV T+ +I
Sbjct: 445 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNV------------------WTYTIMI 486
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G + +A L M G P+ Y+ + +
Sbjct: 487 NGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITR 522
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------IHLHN------- 94
P + +T ++ K+ + V+ L ++ G+ PN+ TL HL
Sbjct: 57 PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 116
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +GH P TFN +I+ LC GKI + L L M G P+ Y TLI L
Sbjct: 117 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGL 174
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 75/179 (41%), Gaps = 30/179 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C D A ++ M G PN+ YT + EA ++L +K+ GL P
Sbjct: 453 CHCG--DLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSP 510
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH------------- 93
DV+ Y V+ GFCK G+ E L E I +G+ PNV T IH +
Sbjct: 511 DVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSF 570
Query: 94 -NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++D G P + ++I C G KA M + G +P + LI L +
Sbjct: 571 IEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSK 629
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC E + V+ M + G PN+ TY+++ EA E+ ++ N GL PD
Sbjct: 242 YCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPD 301
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----DIGHIPR--- 103
Y Y ++DGFC+ RS E +L+E G+ P+ V L N DIG +
Sbjct: 302 NYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKE 361
Query: 104 ----------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
T T+ +I LC +G ++KA L M G P Y+ LI+
Sbjct: 362 EMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIE 415
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A M D G P+V T+++L EA + + + GL PD
Sbjct: 592 YCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPD 651
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+TYT+++ CK G EL ++ ++G+ PN+V T+N +
Sbjct: 652 VFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIV------------------TYNAL 693
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC +G+I KA L + E G + Y T+I
Sbjct: 694 INGLCKLGEIAKARELFDGIPEKGLARNSVTYSTII 729
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
EA ++++ M DN PN TYTIL EA ++ M ++ + P+V TYT+
Sbjct: 807 LIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTS 866
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
++ G+ ++GR +E+ L +E + RG+ P+ + ++ ++ A
Sbjct: 867 LLHGYNRIGRRSEMFSLFDEMVARGIKPD------------------DLAWSVMVDAHLK 908
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G KAL L+ M G + LY LI L
Sbjct: 909 EGNWIKALKLVDDMLSEGVNVCKNLYTILIDAL 941
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR++ D + + G N TY+ + EA+++ +K G+ PD
Sbjct: 698 CKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDS 757
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV--TPNVVTLIH--------------LHNV 95
+ Y A++DG CK G + + + L +E G+ TP LI + ++
Sbjct: 758 FVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDM 817
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D P +T+ +I+ C VG I +A L M + +P+ Y +L+
Sbjct: 818 VDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLL 868
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A + M G P++ TY L +AYE+L+ +K + L +
Sbjct: 383 CKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANA 442
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
Y A+++G C G EL E I G+ PN+V T++ L
Sbjct: 443 YMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGV 502
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D G P +N VI C GK+++ L M G P+ Y I
Sbjct: 503 MKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFI 554
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 18/104 (17%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDVYTYT +++ +C+VG+ E +L + E+G PN+V T++
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLV------------------TYS 271
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
VI LC G +D+AL L M G +P +Y TLI +Q
Sbjct: 272 VVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQ 315
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----EAYEM------LMNVKNDGLKPD 50
+C E + + M G PNV TY A EM + + + G+ P+
Sbjct: 522 FCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPN 581
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
T ++DG+CK G + + +++GV P+V T LIH
Sbjct: 582 DVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFS 641
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G +P T+ ++I LC G + A L M + G P+ Y+ LI L
Sbjct: 642 ELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGL 697
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E + ++D M+ G P+ YT L A+++ + +K +
Sbjct: 312 FCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLN 371
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----LHNVIDIGHIPR 103
+TY A++ G CK+G + +L +E G+ P++ T LI + N+ +
Sbjct: 372 TFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLI 431
Query: 104 TITFNN----------VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I N ++ LC G + +A L M G P+ +Y T++K L ++
Sbjct: 432 EIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKE 490
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 29/140 (20%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TYT L E +L +++ G P++ TY+ V+ G C+ G +E +EL
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+G+ +P + +I C + + +L MY
Sbjct: 290 KRSMANKGL------------------LPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTM 331
Query: 134 GKIPSRTLYDTLIKKLDQQP 153
G P Y LI +Q
Sbjct: 332 GLKPDHVAYTALINGFVKQS 351
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P T+ N+I A C VGK+++ +LF M E G IP+ Y +I L
Sbjct: 229 VPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGL 277
>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
viburnoides]
Length = 431
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
VYTY+ +++G CK + ++ EL +E + +G+ PN V TLI H
Sbjct: 212 VYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 324
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M P++ TY L +A+ ++ + GLKPD TYT ++D
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLID 325
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
G CK G + E I+ + V LI L ++ +G P
Sbjct: 326 GCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKP 385
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 386 DARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 293 CKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDX 352
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G + +LL E
Sbjct: 353 VXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 412
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 413 MQRDGHVPSVVT 424
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++D M + G PNV TY++L + + +L + G +PDV
Sbjct: 147 CKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDV 206
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
Y +++G CK R +E +EL+ I G P VVT L +
Sbjct: 207 IMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQV 266
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P I +N VI LC ++D A LL M +P Y T+I L
Sbjct: 267 MSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TYT + A E+L + G P+V TY+ +++G CK GR+++ L
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTL 193
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L E RG P+V+ L N +I G P +T+N++++ C
Sbjct: 194 LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D+A L+ +M E G P Y+T+I L
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGL 286
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHL 92
+AYE+L +++ G+ P V + V+ G CK GR + + TP+++T I +
Sbjct: 48 QAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILV 107
Query: 93 HNVIDIGHI-----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
++ G + P +T+ VI LC GK+D+A+ LL LM E G
Sbjct: 108 DALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGC 167
Query: 136 IPSRTLYDTLIKKL 149
P+ Y L++ L
Sbjct: 168 CPNVITYSVLVEGL 181
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 69/184 (37%), Gaps = 40/184 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +++ M +G +P V TY L A+ ++ + G PDV
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDV 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-------------- 97
Y V+ G C+ R ++ LL + + P+V+T +ID
Sbjct: 277 INYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT---YSTIIDGLCKDWRVDADWKL 333
Query: 98 ------------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
G P T+ VI+ LC K +AL LL M + +P + + +
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393
Query: 146 IKKL 149
I L
Sbjct: 394 IGSL 397
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 40/187 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++I M + G P+V Y + +A +L + PD
Sbjct: 251 FCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPD 310
Query: 51 VYTYTAVMDGFCKVGRSN---------EVMELLNEAIERGVTPNVVT------------- 88
V TY+ ++DG CK R + E++E++ + G PN T
Sbjct: 311 VITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQT---GCPPNAGTYAVVIEGLCRARK 367
Query: 89 ----LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
L L +ID +P +F+ VI +LC +D A + +M E P+ Y
Sbjct: 368 SQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAA 427
Query: 145 LIKKLDQ 151
LI L +
Sbjct: 428 LIDGLSK 434
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++++ M G PN TY ++ +A +L + + + PD+ +++ V+
Sbjct: 336 ACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIG 395
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG----------------HIPR 103
CK + ++ ER PN V L + + G P
Sbjct: 396 SLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPG 455
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N+V+ LCGVG+I++A+ ++ M P Y LI+ L
Sbjct: 456 VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGL 501
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++D M + G PNV TY++L + + +L + G +PDV
Sbjct: 147 CKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDV 206
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
Y +++G CK R +E +EL+ I G P VVT L +
Sbjct: 207 IMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQV 266
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P I +N VI LC ++D A LL M +P Y T+I L
Sbjct: 267 MSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TYT + A E+L + G P+V TY+ +++G CK GR+++ L
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTL 193
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L E RG P+V+ L N +I G P +T+N++++ C
Sbjct: 194 LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D+A L+ +M E G P Y+T+I L
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGL 286
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHL 92
+AYE+L +++ G+ P V + V+ G CK GR + + TP+++T I +
Sbjct: 48 QAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILV 107
Query: 93 HNVIDIGHI-----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
++ G + P +T+ VI LC GK+D+A+ LL LM E G
Sbjct: 108 DALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGC 167
Query: 136 IPSRTLYDTLIKKL 149
P+ Y L++ L
Sbjct: 168 CPNVITYSVLVEGL 181
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 69/184 (37%), Gaps = 40/184 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +++ M +G +P V TY L A+ ++ + G PDV
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDV 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-------------- 97
Y V+ G C+ R ++ LL + + P+V+T +ID
Sbjct: 277 INYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT---YSTIIDGLCKDWRVDADWKL 333
Query: 98 ------------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
G P T+ VI+ LC K +AL LL M + +P + + +
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393
Query: 146 IKKL 149
I L
Sbjct: 394 IGSL 397
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 40/187 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++I M + G P+V Y + +A +L + PD
Sbjct: 251 FCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPD 310
Query: 51 VYTYTAVMDGFCKVGRSN---------EVMELLNEAIERGVTPNVVT------------- 88
V TY+ ++DG CK R + E++E++ + G PN T
Sbjct: 311 VITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQT---GCPPNAGTYAVVIEGLCRARK 367
Query: 89 ----LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
L L +ID +P +F+ VI +LC +D A + +M E P+ Y
Sbjct: 368 SQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAA 427
Query: 145 LIKKLDQ 151
LI L +
Sbjct: 428 LIDGLSK 434
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++++ M G PN TY ++ +A +L + + + PD+ +++ V+
Sbjct: 336 ACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIG 395
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG----------------HIPR 103
CK + ++ ER PN V L + + G P
Sbjct: 396 SLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPG 455
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N+V+ LCGVG+I++A+ ++ M P Y LI+ L
Sbjct: 456 VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGL 501
>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
Length = 653
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ + E + ++ ++ GL+P+V TYT +++ FCK G +L + G TPNV T
Sbjct: 248 FRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATF 307
Query: 90 IHL----------HNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
L H+ +D+ G P T+++N +I+ LC VG + A +L M +
Sbjct: 308 TALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQ 367
Query: 133 HGKIPSRTLYDTLI 146
HG P+ Y TLI
Sbjct: 368 HGCFPNARTYSTLI 381
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G+ P+ +Y +L A +L +++ G P+ TY+ ++DGF K G
Sbjct: 330 MVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGD 389
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDIGHI----PRTITFNN 109
+ + + N+ G PNVV ++ ++ID + P T+TFN
Sbjct: 390 LDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNT 449
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I++LC ++ +AL + M HG P+ Y+ L+ L
Sbjct: 450 LIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGL 489
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 23/170 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN-----DGLKPDVYTYTA 56
C + ARK++D M G P+ TY TI+ A L V P +Y A
Sbjct: 180 CQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNA 239
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIG 99
V+ C+ R EV ++ + + RG+ PNV+T + N ++ G
Sbjct: 240 VILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITG 299
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P TF ++ L G++ AL + M G PS Y+ LI+ L
Sbjct: 300 CTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGL 349
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 23/155 (14%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G PNV TY +L A +ML + G PD TY ++ C +GR
Sbjct: 160 MRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGR 219
Query: 67 SNEVMELLNEAIERGVTPNVVTL-----IHLHNVIDI-------GHIPRTITFNNVIQAL 114
+E E+L+ A + N V L + V + G P IT+ ++ A
Sbjct: 220 VDEATEVLSAAPPVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAF 279
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G++ A +L M G P+ + L+ L
Sbjct: 280 CKAGELRMACAILARMVITGCTPNVATFTALVGGL 314
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 34/176 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN A V M +G PN TY L +A +M++ ++N G++ +
Sbjct: 455 CNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSL 514
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------- 93
TY V+ G C++ E M + I RG+ P+ T +IH +
Sbjct: 515 VTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGA 574
Query: 94 -NVIDIGHIPRTITFNNVIQA-LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
NV++ G R I ++ A LC K++ A++ L M G P+ ++ L++
Sbjct: 575 MNVVNCG---RNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVR 627
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A V++ M +G PN TY+ L A + ++ G KP+V
Sbjct: 350 CSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNV 409
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YT ++ FCK N+ L+++ + PN VT L H
Sbjct: 410 VVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHE 469
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G P T+N ++ L G AL ++ M HG S Y+T++ L Q
Sbjct: 470 MRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQ 526
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 18/87 (20%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
N++ DG++P+V+TY ++ C+ R ++L+E +G P+
Sbjct: 159 NMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPD--------------- 203
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLL 127
+T+ ++ ALC +G++D+A +L
Sbjct: 204 ---DVTYGTIVSALCTLGRVDEATEVL 227
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K EA D M G PNV Y L +A + ++ +G P+V T
Sbjct: 329 KGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRT 388
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI------------ 101
Y+A++DG+ K G + E+ N I G PNVV + +V+ +
Sbjct: 389 YSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQ 448
Query: 102 -----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+TFN I+ LCG G++D A+ + M G P+ T Y+ L+ L
Sbjct: 449 VENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSL 501
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A KV D M ++G PN TTY L EA+ ++ ++++ G++ ++
Sbjct: 467 CGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNL 526
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNV 95
TY ++ G+C G E +ELL + + RG P+ +T+ I L +
Sbjct: 527 VTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDR 586
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P I + ++I +C +++A++ L M G P+ ++ L++ L
Sbjct: 587 LSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPDV 51
C + F EA +++D M + G PNV +Y TI+ A NV+ G P++
Sbjct: 257 CKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNL 316
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------LHNV 95
+T+T+++ GF G S+E ++ + I GV PNVV L+H + N
Sbjct: 317 HTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQ 376
Query: 96 IDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++I G P T++ +I G +D A + M HG P+ Y ++ L
Sbjct: 377 MEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVL 431
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
++N F + M +G PNV TY IL A+++L+ + + G PD
Sbjct: 158 DENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEV 217
Query: 53 TYTAVMDGFCKVGRSNEVMEL---------LNEAIERGVTPNVV---TLIHLHNVIDIGH 100
+YT ++ CK+G+ E EL + A+ GV L +++ G
Sbjct: 218 SYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P I++ +I AL G ++ +L +L M+ G P+ + +LIK
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIK 324
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y D A +V ++M +G HPNV YT + +AY ++ N++ + P+
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------VI 96
T+ + G C GR + +++ ++ G PN T L + V
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515
Query: 97 DIGHIP---RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+ H +T+N +I C G + +AL LL M G P + +I +Q
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQ 574
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEA------YEML----MNVKNDGLKPDVYTYTAVM 58
+A K M D P V Y IL+A ++M+ N+K DG++P+V+TY ++
Sbjct: 129 QALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILL 188
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-----------PRTIT 106
CK R + +LL E +G P+ V+ L ++ +G + P
Sbjct: 189 KALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPV 248
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+N +I +C ++A LL M G P+ Y T+I L
Sbjct: 249 YNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALS 292
>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hermannioides]
Length = 417
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 138 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 197
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 198 VYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYK 257
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 258 RMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 310
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M P++ TY L +A++++ + GLKPD +TYT ++D
Sbjct: 252 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 311
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
G CK G + E I+ + + V LI L ++ + P
Sbjct: 312 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKP 371
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T T+ +I C G + K LL M G PS Y+ L+
Sbjct: 372 DTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 415
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 279 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 338
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + LKPD TYT +++ FCK G + +LL E
Sbjct: 339 VAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 398
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 399 MQRDGHAPSVVT 410
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 93 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 144
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 145 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 204
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G IP+ + TLI
Sbjct: 205 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 240
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 30/174 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ N+ DF A V+ + G+ P+ T+T L EA ++ + +G +P
Sbjct: 102 CHLNRVDF--ALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQP 159
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI---- 101
+V TY +M+G CK + E + L +E I +G++P++ T LIH L N+ + H+
Sbjct: 160 NVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLL 219
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P ++ N V+ ALC GK+ +A ++ +M + G P Y L+
Sbjct: 220 NEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALM 273
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN ++ +++ M + PNV + I+ EA++++ + G++PDV
Sbjct: 207 CNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDV 266
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDIGH----- 100
TY A+MDG C +E +++ + + G NVV+ L N ID
Sbjct: 267 VTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEE 326
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IP T+T++ +I LC VG++ A+ L M G+IP+ Y L+ L
Sbjct: 327 MCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYL 381
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + + M G PN+ TY+IL EA +L ++ L PDV
Sbjct: 347 CHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDV 406
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +DG C+ G +L + RG+ P+V T HN++ I
Sbjct: 407 QVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWT----HNIM--------------I 448
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ LC G +D+A L M E+G + + Y+T+ + L Q
Sbjct: 449 RGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQ 488
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 20/109 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ PDVYT T V++ FC + R + + +L + ++ +GH P T
Sbjct: 86 GIPPDVYTLTIVINSFCHLNRVDFALSVLAK------------------ILKLGHQPDTA 127
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL--DQQ 152
TF +++ LC VGKI +AL + M G P+ Y TL+ L D+Q
Sbjct: 128 TFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQ 176
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F AR M NG TYT + EA ML + DG+ PD+
Sbjct: 379 CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDI 438
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI--- 98
TY+A+++GFC+VGR E++ G++PN + TLI+ L I I
Sbjct: 439 VTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEA 498
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+ P TFN ++ +LC GK+ +A + M G +P+ +D LI
Sbjct: 499 MILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLI 550
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K F A +++D+M G + +V TY +L + Y +L +++ + P+
Sbjct: 238 YCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPN 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +++GF G+ +LLNE + G++PN VT N + GHI
Sbjct: 298 EVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTF----NALIDGHISE------- 346
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +AL + +M G I + Y L+ L
Sbjct: 347 -------GNFKEALKMFHMMEAKGLIGTEVSYGVLLDGL 378
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V T+ IL ++ ++ ++ G P + TY V+ +CK GR +EL
Sbjct: 191 PDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250
Query: 74 LNEAIERGVTPNVVT---LIH---LHNVIDIGHI-----------PRTITFNNVIQALCG 116
L+ +GV +V T LIH N G++ P +T+N ++
Sbjct: 251 LDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSN 310
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK+ A LL M G P+ ++ LI
Sbjct: 311 EGKVLIARQLLNEMLTFGLSPNHVTFNALI 340
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E ++ + M G P+ T+ +L EA E + + +DG+ P+
Sbjct: 484 CRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNA 543
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGH---------- 100
++ +++G+ G + + +E + G P T L + GH
Sbjct: 544 VSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKS 603
Query: 101 ---IPR---TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+P T+ N +I A+C G +DKA+ L M + +P Y +LI L ++
Sbjct: 604 LQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRK 661
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G P VYT A++ K V L E ++R + P+V T L NV+
Sbjct: 153 GFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKS 212
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G+ P +T+N V+ C G+ A+ LL M G Y+ LI
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHD 272
Query: 149 L 149
L
Sbjct: 273 L 273
Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTL----------------IH 91
PD +TYT+++ G C+ G++ + EA RG + PN V +
Sbjct: 646 PDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFY 705
Query: 92 LHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D +G +T N +I +GKI+K LLF M + P+ T Y+ L+
Sbjct: 706 FRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILL 761
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D EA ++ M P + ++T L EA E+ + + N GLK D+
Sbjct: 942 CGKAD--EASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDL 999
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+Y ++ G C G EL E G NV T
Sbjct: 1000 VSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTT 1036
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C N + ++ M HPN TY +L A ++L + GL P+
Sbjct: 274 CRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNH 333
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------- 92
T+ A++DG G E +++ + +G+ V+ L
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMR 393
Query: 93 --HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N + +G IT+ +I LC G +D+A+++L M + G P Y LI
Sbjct: 394 MKRNGVCVGR----ITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALI 445
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E+ +L + G+ P+ Y +++G C+VG + E I + P
Sbjct: 877 ESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICP--------P 928
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
NV + + +++AL GK D+A LLL M + +P+ + TL+
Sbjct: 929 NVAE----------SAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLM 971
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A ++ M P+V TYTI+ +A ++ G+K +V
Sbjct: 241 CKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANV 300
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+TY +++ FC GR ++ +LL + I R +TPNVVT L +
Sbjct: 301 FTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNE 360
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G P TIT+N++I LC ++D+A ++ LM G P Y+ LI
Sbjct: 361 MITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILI 412
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A M G NV TY L + ++L ++ + P+V
Sbjct: 276 CKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNV 335
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T++A++D K G+ E +L NE I RG+ PN +T L + ++D+
Sbjct: 336 VTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDL 395
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G P T+N +I C ++D + L M G I Y TLI+ Q
Sbjct: 396 MVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQ 452
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 28/151 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+ + + M G PN TY L EA +M+ + + G PD++TY ++
Sbjct: 353 EAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILI 412
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
+GFCK + ++ M L + RG+ + VT L ++ G
Sbjct: 413 NGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVH 472
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
P +T+ ++ LC G++++AL +L M++
Sbjct: 473 PGIMTYAILLDGLCDNGELEEALGILDQMHK 503
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + FEA +++D M + + P++ T + EA +++ + +G +P+
Sbjct: 171 CLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQ 230
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
+TY +++ CK G + ++LL + R + P+VVT I + N+ G +
Sbjct: 231 FTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSE 290
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I + C G+ D LL M P+ + LI L
Sbjct: 291 METKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSL 345
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + A + +F GY PN T+ L EA E++ + P
Sbjct: 134 CFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVP 193
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------VIDIG 99
D+ T +++G C R +E ++L+ + G PN T + N +D+
Sbjct: 194 DLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLL 253
Query: 100 H-------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I LC G++D AL M G + Y++LI
Sbjct: 254 RKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLI 307
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A+KV M G HP + TY IL EA +L + ++ D
Sbjct: 450 FCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELD 509
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ Y ++ G C + ++ L +GV ++ ++N +
Sbjct: 510 IGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQ------------------SYNIM 551
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ LC + +A L M E G P Y+TLI+
Sbjct: 552 LSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIR 588
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
VID+ G Y ++ A M +K G+ D+YT +++ FC+ +
Sbjct: 90 VIDFNRLFGLLARTKQYDLVLALCKQMELK--GIAYDLYTLNIMINCFCRRRKLGFAFSA 147
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ + + +G+ P T+TFN ++ LC G++ +A+ L+ M
Sbjct: 148 MGK------------------IFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLS 189
Query: 134 GKIPSRTLYDTLIKKL 149
+P +T++ L
Sbjct: 190 QHVPDLITLNTIVNGL 205
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K EA D M G PNV Y L +A + ++ +G P+V T
Sbjct: 329 KGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRT 388
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI------------ 101
Y+A++DG+ K G + E+ N I G PNVV + +V+ +
Sbjct: 389 YSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQ 448
Query: 102 -----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+TFN I+ LCG G++D A+ + M G P+ T Y+ L+ L
Sbjct: 449 VENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSL 501
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A KV D M ++G PN TTY L EA+ ++ ++++ G++ ++
Sbjct: 467 CGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNL 526
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNV 95
TY ++ G+C G E +ELL + + RG P+ +T+ I L +
Sbjct: 527 VTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDR 586
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P I + ++I +C +++A++ L M G P+ ++ L++ L
Sbjct: 587 LSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPDV 51
C + F EA +++D M + G PNV +Y TI+ A NV+ G P++
Sbjct: 257 CKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNL 316
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------LHNV 95
+T+T+++ GF G S+E ++ + I GV PNVV L+H + N
Sbjct: 317 HTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQ 376
Query: 96 IDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++I G P T++ +I G +D A + M HG P+ Y ++ L
Sbjct: 377 MEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVL 431
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
++N F + M +G PNV TY IL A+++L+ + + G PD
Sbjct: 158 DENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEV 217
Query: 53 TYTAVMDGFCKVGRSNEVMEL---------LNEAIERGVTPNVV---TLIHLHNVIDIGH 100
+YT ++ CK+G+ E EL + A+ GV L +++ G
Sbjct: 218 SYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P I++ +I AL G ++ +L +L M+ G P+ + +LIK
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIK 324
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y D A +V ++M +G HPNV YT + +AY ++ N++ + P+
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------VI 96
T+ + G C GR + +++ ++ G PN T L + V
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515
Query: 97 DIGHIP---RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+ H +T+N +I C G + +AL LL M G P + +I +Q
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQ 574
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEA------YEML----MNVKNDGLKPDVYTYTAVM 58
+A K M D P V Y IL+A ++M+ N+K DG++P+V+TY ++
Sbjct: 129 QALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILL 188
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-----------PRTIT 106
CK R + +LL E +G P+ V+ L ++ +G + P
Sbjct: 189 KALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPV 248
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+N +I +C ++A LL M G P+ Y T+I L
Sbjct: 249 YNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALS 292
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C KND A KV+D + G PN+ TYT + A +L + + G PD
Sbjct: 200 CKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDA 259
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYT +MDG+CK+GR +E ++++ + + PN VT +I
Sbjct: 260 ITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDE 319
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D +P + VI ALC K+D+A L M ++ +P L TLI L
Sbjct: 320 MLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWL 374
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 29/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D A++V++ M D G++P+ TYT+L EA ++ +++ + ++P+
Sbjct: 234 YVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN 293
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVIDIGHIPR 103
TY ++ CK +S E + +E ++R P+ + L H V + + R
Sbjct: 294 EVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWR 353
Query: 104 TITFNN----------VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ NN +I LC G++ +A LF ++ G IPS Y+TLI
Sbjct: 354 KMLKNNCMPDNALLSTLIHWLCKEGRVSEA-RKLFDEFDKGSIPSLLTYNTLI 405
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EARK+ D FD G P++ TY L EA + ++ KP+
Sbjct: 375 CKEGRVSEARKLFD-EFDKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNA 433
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRTITFNNV 110
+TY +++G K G E + +L E +E G PN T LI + +G I +
Sbjct: 434 FTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAI---KI 490
Query: 111 IQALCGVGKIDKALLLLFL 129
+ GK+DK LFL
Sbjct: 491 VSMAVMNGKVDKESWELFL 509
Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 36 YEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH--- 91
+ M N K G+ P+++T ++ CK ++L+E G+ PN+VT
Sbjct: 173 HAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILG 232
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L ++D G P IT+ ++ C +G+ +A ++ M ++ P
Sbjct: 233 GYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEP 292
Query: 138 SRTLYDTLIKKL 149
+ Y +I+ L
Sbjct: 293 NEVTYGVMIRAL 304
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+ +Y L E + + + G++PD
Sbjct: 127 FCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPD 186
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 187 VYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 246
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 247 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLI 299
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A +ID M G P+ TYT L A+E + + ++ D
Sbjct: 268 CKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDD 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P+ T T+ +I
Sbjct: 328 VVYTALISGLCQEGRSVDAEKMLREMLSVGLNPD------------------TGTYTMII 369
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + K LL M G +PS Y+ L+
Sbjct: 370 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 404
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
+C A + M D G PNV TYT L AY +L +++N GL P+
Sbjct: 257 FCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPN 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+T + ++D CK R E LL I++G+ N + L
Sbjct: 317 EWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQ 376
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P T++++I LC ++ +A+L+L M E G PS Y +I +L
Sbjct: 377 TLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDEL 432
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA + ++ DG PD + Y ++ G C GR+ E LL++A+ G PNVV
Sbjct: 158 VREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNA 217
Query: 92 L----HNVIDI-------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L NV D+ G P T+ +I C K+D+A++L M + G
Sbjct: 218 LIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAG 277
Query: 135 KIPSRTLYDTLIK 147
+P+ Y LI+
Sbjct: 278 LVPNVVTYTALIQ 290
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+ ++ + G N YT L A ++ + + G PD
Sbjct: 328 CKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDA 387
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIH----------LHN 94
+TY++++DG C+ +E M +L++ +E+GV P+ VT L+ L
Sbjct: 388 HTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDK 447
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G P T+ +++ C G+++ A ++ M +HG P+ Y+ LI
Sbjct: 448 MIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALI 499
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 44/180 (24%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
++K++D M G P+V TYTI +A M++++ + G+ P++ TY A++
Sbjct: 441 SKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALIC 500
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPN-----------------------------VVTLI 90
G+ +G +++ + G PN + +
Sbjct: 501 GYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMK 560
Query: 91 HLHNVIDIG---HIPRTI-TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+LH +++ +P I +N + +LC V ++D+A +LL M PS +Y ++I
Sbjct: 561 YLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSII 620
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 83/230 (36%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ +A ++ +M D+G PN+ TY L +A+ ++ +G KP+
Sbjct: 467 YCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPN 526
Query: 51 VYTYTAVM---------------------------------------------------D 59
+YT ++
Sbjct: 527 EESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLT 586
Query: 60 GFCKVGRSNEVMELLNEAIERGVTP--NVVT---------------LIHLHNVIDIGHIP 102
C+V R +E LL E +TP +V T L + +++ G+IP
Sbjct: 587 SLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIP 646
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLM----YEHGKIPSRTLYDTLIKK 148
+ ++ ++I +LC G I A + M Y + +I R L D L++K
Sbjct: 647 QLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQK 696
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 29/135 (21%)
Query: 26 NVTTYTIL-EAYEM----------LMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
N+ TYT L AY + L ++ G PD + YT+ + G+C+ G LL
Sbjct: 71 NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAG-------LL 123
Query: 75 NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
A + L+ L G + T+ ++ LCG G + +A+ + M G
Sbjct: 124 AHACR------LFVLMPLR-----GCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADG 172
Query: 135 KIPSRTLYDTLIKKL 149
P +Y T++ L
Sbjct: 173 CAPDPHVYATMVHGL 187
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EA V+ M D G P++ +Y IL +A ++ +K +G+ PD TY
Sbjct: 342 FIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGC 401
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPR------------ 103
++ G+C VG+ + LL E + PN T I LH++ +G I
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKG 461
Query: 104 ----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
T+T N ++ LCG G++DKA+ ++ M HG L ++ I +D
Sbjct: 462 YGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD 512
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + AR++ D M + G PN T+ IL + E+L +++ G+ P+
Sbjct: 158 CDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNK 217
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI--- 101
Y ++ FC+ GR+++ +++ + E G+ P++VT L V+D I
Sbjct: 218 VIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSD 277
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +IT+N +++ C VG ++ A L + E+ + S Y+ ++ L
Sbjct: 278 MELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGL 336
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P YT+ ++ C + EL +E E+G PN
Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPN------------------EF 183
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TF +++ C G DK L LL M G +P++ +Y+T++
Sbjct: 184 TFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIV 224
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V D + +N P++ TY+ L EA + + + L+PD Y + FC
Sbjct: 511 VDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFC 570
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID----IGHIPRTI 105
K G+ + +L + ++G ++ T + +H ++D G P
Sbjct: 571 KQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNIC 630
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
T+N IQ LC K++ A LL M + P+ + LI+ + P
Sbjct: 631 TYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVP 678
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A +V+ M G H ++ TY I E + ++ +K G+ P+
Sbjct: 569 FCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPN 628
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY + C+ + + LL+E +++ + PNV +F +
Sbjct: 629 ICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNV------------------FSFKYL 670
Query: 111 IQALCGVGKIDKA 123
I+A C V D A
Sbjct: 671 IEAFCKVPDFDMA 683
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 31/159 (19%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYT 53
KN FE ++D M + G PN+ TY + +A +L + + P+V++
Sbjct: 607 KNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFS 666
Query: 54 YTAVMDGFCKV---GRSNEVME---------------LLNEAIERGVTPNVVTLIHLHNV 95
+ +++ FCKV + EV E + NE + G L L V
Sbjct: 667 FKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATEL--LEAV 724
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+D G T + +++++LC +++ A +L M + G
Sbjct: 725 LDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRG 763
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 16/167 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ A+ ++ M N PN T IL EA E+L + G D
Sbjct: 406 YCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLD 465
Query: 51 VYTYTAVMDGFCKVGRSNEVMEL-----LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
T ++DG C G ++ +E+ ++ + G N + ++I+ +P I
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLI 525
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T++ ++ LC G+ +A L M P Y+ I +Q
Sbjct: 526 TYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQ 572
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 29/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++D G P++ TY L A EM+ + + G+ PDV
Sbjct: 411 CKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDV 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++G CK G+S EVME+ E+G TPN+ IT+N ++
Sbjct: 471 ITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNI------------------ITYNIIV 512
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+LC K+++A+ LL M G P + TL
Sbjct: 513 DSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTL 546
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 38/170 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI--------------------LEAYEMLMNV 42
C K FE+ +++ + G PN+ T+ I +EA E L +
Sbjct: 227 CKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKM 286
Query: 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP 102
N G +PD TY +++DG+CK G + +L +A+ +G P+
Sbjct: 287 VNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPD----------------- 329
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ ++I C G D+A+ + G PS LY+TLIK L QQ
Sbjct: 330 -EFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQ 378
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C D A V G P++ Y IL A +++ + +G P+
Sbjct: 340 FCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPN 399
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVIDI-- 98
++TY V++G CK+G ++ L+++AI +G P++ T + L + ++
Sbjct: 400 IWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVN 459
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P IT+N ++ LC GK ++ + + M E G P+ Y+ ++ L
Sbjct: 460 RMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSL 515
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K +A +V+ G+ P+ TY L A + + GL+P
Sbjct: 305 YCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPS 364
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
+ Y ++ G + G ++L+NE E G PN+ T L + V D H+
Sbjct: 365 IVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVD 424
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N +I C K+D A ++ M+ G P Y+TL+ L
Sbjct: 425 DAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGL 480
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A ++ +KN G PD YTY V+DGFCK+G + + L E +E+
Sbjct: 595 AMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRF------------ 642
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
IP TF V+ LC K+ +A+ ++ LM + G +P
Sbjct: 643 ------IPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVP 679
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E ++ M + G PN+ TY I+ EA ++L +K+ GLKPDV
Sbjct: 481 CKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDV 540
Query: 52 YTYTAVMDGFCKVGRSNEVMELLN------EAIERGVTPNVVT-----------LIHLHN 94
++ + GFCK+G + +L + T N++ + L +
Sbjct: 541 VSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFS 600
Query: 95 VI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+ + G P T+ VI C +G I + L E IPS T + ++
Sbjct: 601 VMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVL 653
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 28/143 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDVYTYTAVM 58
+A KV M D G +V TYTI A +L N+ G + Y V+
Sbjct: 129 QAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVV 188
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
G G + EL +E + R + P+VV L+H L V+ G
Sbjct: 189 AGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVC 248
Query: 102 PRTITFNNVIQALCGVGKIDKAL 124
P TFN +Q LC G +D+A+
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAV 271
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 25/156 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+++ + + GYH +A+++ M +++ G++ DVYTYT + FCK R + L
Sbjct: 117 IMNILVEFGYHN--------QAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRL 168
Query: 74 LNEAIERGVTPNVVT----LIHLHNVIDIGHI-------------PRTITFNNVIQALCG 116
L E G N V + L++ + H P + FN ++ LC
Sbjct: 169 LRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCK 228
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G + ++ LL + + G P+ ++ ++ L ++
Sbjct: 229 KGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCRE 264
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +D M G P+ TY+IL EA + + K +G+ PDV
Sbjct: 543 CGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDV 602
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY+ ++DG CK R+ E +L +E + + PN T+ +N++I
Sbjct: 603 YTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPN------------------TVVYNHLI 644
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
A C G++ AL L M G P+ Y +LIK +
Sbjct: 645 GAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS 683
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y+F + + EA E+ ++ G+ P+V TY V+DG GR +E +
Sbjct: 253 YLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEK 312
Query: 77 AIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
+ERGV P ++T L+ L + + G P I +NN+I +L G
Sbjct: 313 MVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGS 372
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA+ + LM G + + Y+TLIK
Sbjct: 373 LNKAIEIKDLMVSKGLSLTSSTYNTLIK 400
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 2 YC---NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----EAYEM-----LMNVKNDGLK 48
YC ++ + A V + + G P+ TT IL A E +V G+
Sbjct: 190 YCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVCKGVS 249
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDVY +T ++ FCK G+ E +EL ++ E GV PNVV T+N
Sbjct: 250 PDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVV------------------TYN 291
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
VI L G+ D+A + M E G P+ Y L+K L +
Sbjct: 292 TVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTK 334
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++ + M G PN TYT L EA +L ++ +GL+P+
Sbjct: 647 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPN 706
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ YTA++DG+ K+G+ +V LL E + V PN IT+ +
Sbjct: 707 VFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN------------------KITYTVM 748
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G + +A LL M E G +P Y I
Sbjct: 749 IGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFI 784
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+ + N G D T A++ G C+ G+ E + E + RG
Sbjct: 480 KAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGF----------- 528
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+D +++N +I CG K+D+A + + M + G P Y LI+ L
Sbjct: 529 -VMD------RVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGL 577
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M + G P + TY+IL +AY +L + G P+V Y ++
Sbjct: 305 EAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLI 364
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
D + G N+ +E+ + + +G++ T LI L ++ IG
Sbjct: 365 DSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFN 424
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+F +VI LC D AL + M P L TLI L
Sbjct: 425 VNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGL 472
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 14 VIDYMFDNGYHPNVTTY-----TILEAYEMLMNVK------NDGLKPDVYTYTAVMDGFC 62
V+ M + G+ PNV Y +++EA + ++ + GL TY ++ G+C
Sbjct: 344 VLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC 403
Query: 63 KVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVID-----IGHI------PRTI 105
K G+++ LL E + G N V+ L+ H++ D +G + P
Sbjct: 404 KSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGG 463
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+I LC GK KA+ L G
Sbjct: 464 LLTTLISGLCKHGKHSKAVELWLKFLNKG 492
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A V D + G P+V ++ L E + + + G++PD
Sbjct: 150 FCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 209
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E +++G+ PN VT L
Sbjct: 210 VYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYK 269
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 270 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLI 322
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A+ +ID M G P+ +YT L A+E + + ++ D
Sbjct: 291 CKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD 350
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P+ T T+ +I
Sbjct: 351 VAYTALISGLCQEGRSIDAEKMLREMLSVGLRPD------------------TGTYTMII 392
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + LL M G +PS Y+ L+
Sbjct: 393 NEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 427
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
F RKV++++ Y V + ILE G +Y + +M FCK G
Sbjct: 105 FDTCRKVLEHLMKLKYFKLVWXFYKEILEC----------GYPASLYFFNILMHRFCKEG 154
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFN 108
+ + + + G+ P+VV+ L N I +G + P T++
Sbjct: 155 DIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 214
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC K+D A L M + G +P+ + TLI
Sbjct: 215 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 252
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
YC + + EA ++ M G PN+ TY T+++AY VK N GL PD
Sbjct: 472 YCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPD 531
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY++++ G C VGR +E ++L NE +G+T NV T+ ++
Sbjct: 532 LYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVA------------------TYTSM 573
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L G+ D+A L M + G IP ++ +L+
Sbjct: 574 ISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA ++ M G + +V TY IL EA +L ++ G+KP+
Sbjct: 402 YCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPN 461
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNV-- 95
V T+T ++ +CK G E L + ++G PN++T + H +
Sbjct: 462 VVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKS 521
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ G +P T++++I C VG++D+AL L M G + Y ++I L ++
Sbjct: 522 EMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKE 580
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL----------EAYE-MLMNVKNDGLKPDVYTYTAVM 58
A + D M PN TY L EA E +L+ +++ G+ ++ + M
Sbjct: 340 RAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTM 399
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLH----------NVIDIGHI 101
DG+C+ G+ +E + L ++G+ +V T L LH ++++ G
Sbjct: 400 DGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVK 459
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +TF I+ C G + +A L M + G++P+ Y+TLI
Sbjct: 460 PNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLI 504
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D EA K+ + M + +V Y+ + A+ + + + P+
Sbjct: 297 YSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPN 356
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TY A++ G CK G+ LL E +GV N+V FN
Sbjct: 357 AHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLV------------------IFNTT 398
Query: 111 IQALCGVGKIDKALLLLFLMYEHG 134
+ C GK+D+AL L +M + G
Sbjct: 399 MDGYCRRGKMDEALRLQAIMEKKG 422
>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 418
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 146 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 318
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 28/165 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYT ++DG CK G + E I+ + + V L
Sbjct: 311 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
++ +G P T+ +I C G + K LL M G +PS
Sbjct: 371 EMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPS 415
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 287 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G + +LL E
Sbjct: 347 VAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 407 MQRDGHVPSVVT 418
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 153 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 213 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + +A+++++ MF G P+V TYT + +A +ML + G KP+
Sbjct: 355 FCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPN 414
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+YTA+++G CK G S E E++N + E PN +T L+H +
Sbjct: 415 TVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVR 474
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+I G P + N +IQ+LC K+D+A
Sbjct: 475 EMIKKGFFPTPVEINLLIQSLCQEEKVDEA 504
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E R +++ M D+ P+ TY EA E L + + D
Sbjct: 285 CKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVD 344
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+A++ FC+ GR ++ E++NE +G P+VV T+ +V
Sbjct: 345 KVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVV------------------TYTSV 386
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC K+D+A +L MY+HG P+ Y L+ L
Sbjct: 387 INGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGL 425
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 31/137 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C K+D A ++D M+ + HP+V TYT I EA ++ M + G P
Sbjct: 530 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPT 589
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY V+ +C++GR ++++LL + + R RT +N V
Sbjct: 590 PVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQEC-------------------RT-AYNQV 629
Query: 111 IQALCGVGKIDKALLLL 127
I+ LC G +++A LL
Sbjct: 630 IEKLCSFGNLEQAYKLL 646
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA++ ++ +NG NV +T + A +L ++ PDV
Sbjct: 496 CQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDV 555
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++D K GR E +L + ++ +G IP +T+ VI
Sbjct: 556 VTYTTIIDALGKKGRIEEATKLAMK------------------MLRVGWIPTPVTYRTVI 597
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C +G+++ L LL M + RT Y+ +I+KL
Sbjct: 598 HQYCRMGRVEDLLKLLEKMLSRQE--CRTAYNQVIEKL 633
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 30/163 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL---------EAYEMLMN--VKNDGLKP 49
YC+ + +A ++I M G P+ ++ YT++ + +LM +K+ L P
Sbjct: 249 YCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLP 308
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D TY + K G +E +E L EA ER + + ++
Sbjct: 309 DQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVD------------------KVGYSA 350
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ + C G++DKA ++ M+ G IP Y ++I L Q+
Sbjct: 351 IVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQE 393
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
+ P+V TY ++ G+C + R + EL+ E +G +P+ I+
Sbjct: 235 IXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPD------------------KIS 276
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLIKKLDQQ 152
+ V+ LC +I + LL+ M + +P + Y+T + L +
Sbjct: 277 YYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 323
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C KN EA V++ M G+ N+ Y +L +A +ML + + G KPD
Sbjct: 425 FCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPD 484
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
++T+ ++ G CKV R + + L + + GV N V TLIH ++
Sbjct: 485 IFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVN 544
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G IT+N +I+A C +G +KAL L M +PS + LI L
Sbjct: 545 DMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGL 600
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
D M NG P+V T+ L A +M+ ++ +G P++ TYT ++DGFCK
Sbjct: 369 DKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKK 428
Query: 65 GRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDIGHIPRTITF 107
+ E +LNE +G N++ L L + D G P TF
Sbjct: 429 NQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTF 488
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N +I LC V + + AL L M G I + Y+TLI
Sbjct: 489 NTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLI 527
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ A E+L ++ + GL PDV TY ++++G CK+G E L N+ G+ P+
Sbjct: 606 VCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPD------ 659
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
IT+N +I C G D A LLL E+ IP+ + L+ +
Sbjct: 660 ------------AITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIK 707
Query: 152 Q 152
+
Sbjct: 708 E 708
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + F V+D + + P+V YEML + G+ P VYT+ VM
Sbjct: 167 YCCEPTFKSYNVVLDILV-SANCPSVAANVF---YEML----SKGVIPTVYTFGVVMKAL 218
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRT 104
C V + LL + + G PN V TLIH L + +G +P
Sbjct: 219 CMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDV 278
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TFN+VI LC + +I + L+ M G P+ Y L+ L
Sbjct: 279 DTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGL 323
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+++ MF G P+V T+ I E +++ + G P+ TY +M
Sbjct: 261 EALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLM 320
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------------------VIDIGH 100
+G C+VG+ +E LLN+ TPN V L N +I G
Sbjct: 321 NGLCRVGKVDEAQVLLNKV----PTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGC 376
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TFN +I LC G + A+ ++ M +G P+ Y TL+
Sbjct: 377 RPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLL 422
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 29/136 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N+ A ++ M +G PN Y L EA ++L + G PDV
Sbjct: 219 CMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDV 278
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+ V+ G C++ R +E +L++ + RG TPN IT+ ++
Sbjct: 279 DTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPN------------------DITYGVLM 320
Query: 112 QALCGVGKIDKALLLL 127
LC VGK+D+A +LL
Sbjct: 321 NGLCRVGKVDEAQVLL 336
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
N V+++L A V NV + ++ G IP TF V++ALC V ++D A LL
Sbjct: 177 NVVLDILVSANCPSVAANV-----FYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLL 231
Query: 128 FLMYEHGKIPSRTLYDTLIKKLDQQ 152
M +HG +P+ +Y TLI L ++
Sbjct: 232 RDMTKHGCVPNSVVYQTLIHALSKR 256
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + +G++PD
Sbjct: 134 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPD 193
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 194 VYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYK 253
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 254 RMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 306
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 32/175 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 239 HCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPD 298
Query: 51 VYTYTAVMDGFCKVG--------RSNEVME-----------LLNEAIERGVTPNVVTLIH 91
+TYT ++DG CK G R + E L++ + G + + +
Sbjct: 299 KFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKM-- 356
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L ++ +G P T+ +I C G + K LL M +G PS Y+ L+
Sbjct: 357 LREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 411
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RK+++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 89 FDTCRKMLEHLMKLRYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 140
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 141 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVL 200
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G IP+ + TLI
Sbjct: 201 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 236
>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
citrodora]
Length = 380
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V++ + G P+V ++ L E + + + G++PD
Sbjct: 144 FCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPD 203
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E +++G+ PN VT L
Sbjct: 204 VYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYK 263
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G++ +A L+ M G P + Y TLI
Sbjct: 264 QMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLI 316
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A +ID M G P+ TYT L A+E + + ++ D
Sbjct: 285 CKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDD 344
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
YTA++ G C+ GRS + ++L E + G+ PN
Sbjct: 345 VVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNT 379
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + +GLKPD
Sbjct: 249 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPD 308
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT ++DG CK G ME E +R + N I L +V+ + +
Sbjct: 309 KITYTTLIDGCCKEGD----METAFEHQKRMIQEN----IRLDDVV----------YTAL 350
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIP 137
I LC G+ A +L M G P
Sbjct: 351 ISGLCQEGRSVDAEKMLREMLSVGLKP 377
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 12 RKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
RKV++++ Y V + ILE G +Y + +M FCK G
Sbjct: 103 RKVLEHLMKLKYFKLVWGFYKEILEC----------GYPASLYFFNILMQRFCKEGDIRV 152
Query: 70 VMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNVIQ 112
+LN + G+ P+VV+ L N I +G + P T++ +I
Sbjct: 153 AQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 212
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC K+D A L M + G +P+ + TLI
Sbjct: 213 GLCKESKMDDANELFDEMLDKGMVPNGVTFTTLI 246
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 29/154 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A+ + + M G P++ +Y+IL EA E+L + + + P+V TY++++
Sbjct: 230 KAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLI 289
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG CK G+ + ++L++E +RG PN+V T+++++ ALC
Sbjct: 290 DGLCKSGKISYALKLVDEMHDRGQPPNIV------------------TYSSILDALCKNH 331
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++D A+ LL M G P+ Y LIK L Q
Sbjct: 332 QVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQS 365
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K++D M D G PN+ TY+ + A +L +KN G++P++
Sbjct: 293 CKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNM 352
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++ G C+ G+ + ++ + + +G HN+ T+ +I
Sbjct: 353 YTYTILIKGLCQSGKLEDARKVFEDLLVKG-----------HNL-------NVYTYTVMI 394
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
Q C G D+AL LL M ++G IP+ Y+ +I L
Sbjct: 395 QGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSL 432
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 38/186 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------EAYEMLM 40
+C A V+ + GY PN T L +A ++
Sbjct: 107 FCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFN 166
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------- 92
+ + + PDVYT+T ++DGFCK GR E +L + +G+ P VVT L
Sbjct: 167 KMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVK 226
Query: 93 ---------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
+ + +G P +++ +I C + +D+A+ LL M+ IP+ Y
Sbjct: 227 QVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYS 286
Query: 144 TLIKKL 149
+LI L
Sbjct: 287 SLIDGL 292
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 27/128 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IH-- 91
G+KP++ +++ FC++G +L + ++ G PN +TL IH
Sbjct: 92 GIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDK 151
Query: 92 ------LHNVIDIGHI-------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
L + +D+ + P TF ++ C G++ +A +L +M G P
Sbjct: 152 HCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPG 211
Query: 139 RTLYDTLI 146
Y++L+
Sbjct: 212 VVTYNSLM 219
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
YC + A ++ M + G PN TYT L A+E++ ++ +G +P+
Sbjct: 336 YCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPN 395
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY A++DG CK G+ E ++L A +G+ + +T+ +
Sbjct: 396 IYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLD------------------KVTYTVM 437
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I C G I AL L M E+G P Y TLI + QQ
Sbjct: 438 ITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQ 479
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 28/156 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C K F + ++ M + G PNV YT + +A+ +L + GLKP+
Sbjct: 230 FCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPN 289
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYT+T++++G CK+G + L + I+ + P T+ +
Sbjct: 290 VYTHTSLINGLCKIGWTERAFRLFLKLIKSS-----------------SYKPNVHTYTVM 332
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C GK+ +A +LL M E G P+ Y TLI
Sbjct: 333 IGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 368
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C + +A V++ M G PNV T+T L A+ + + +K+ KP+
Sbjct: 266 CKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPN 325
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH-------------- 93
V+TYT ++ G+CK G+ LL +E+G+ PN TLI H
Sbjct: 326 VHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMN 385
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P T+N +I LC GKI +A +L + G + Y +I + +Q
Sbjct: 386 KMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQ 444
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + + M +NG HP++ TYT L E+ ++ L P
Sbjct: 441 HCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPT 500
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT+++ G+CKVG+S + + ++ G + +IT+ +
Sbjct: 501 KQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQAD------------------SITYGAL 542
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
I LC ++++A L M + +P TL
Sbjct: 543 ISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTL 577
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 65/169 (38%), Gaps = 30/169 (17%)
Query: 8 FFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
F ARKV D M G P+ ++ L E +L ++ G D T T
Sbjct: 165 FAYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCT 224
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDI 98
++ FC+ GR +V EL +E G PNVV L ++
Sbjct: 225 VIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAK 284
Query: 99 GHIPRTITFNNVIQALCGVGKIDKAL-LLLFLMYEHGKIPSRTLYDTLI 146
G P T ++I LC +G ++A L L L+ P+ Y +I
Sbjct: 285 GLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMI 333
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------ND------ 45
C ++ EA K+ M G PNV TY T+++ L N+ ND
Sbjct: 172 CVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVF 231
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------- 91
+P+V +Y+ ++DG CKVG E + L NE +++GV PNVVT LI
Sbjct: 232 NCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKA 291
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L +I IG +P T+ ++I+ C VG ++ A L M G P Y+ LI
Sbjct: 292 KKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLI 349
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 63/207 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+K+++ M G PN+ TYT L A E+ +++ + G +PDV
Sbjct: 283 CKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDV 342
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
+Y +++G+CK + E M+L NE + G+ P+V T L V
Sbjct: 343 ISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRV 402
Query: 96 IDIGHIPRTI------------------------------------TFNNVIQALCGVGK 119
I +P+ + TF +I LC GK
Sbjct: 403 IKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGK 462
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ A L +YE G P Y ++I
Sbjct: 463 LETAWELFEKLYEEGIQPDAMAYSSMI 489
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA + + M D G PNV T+++L +A ++L + G+ P++
Sbjct: 248 CKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNL 307
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT+++ GFC VG N EL +G P+V I++N +I
Sbjct: 308 FTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDV------------------ISYNMLI 349
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C K+++A+ L M G P L+K L
Sbjct: 350 NGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKAL 387
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 15 IDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
+D + NGY I EA ++ +++ +K D+ T+ ++DG CK G+ EL
Sbjct: 419 LDGLCKNGY--------IFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELF 470
Query: 75 NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ E G+ P+ + ++++I C G++DKA +L M E+G
Sbjct: 471 EKLYEEGIQPD------------------AMAYSSMIHGFCKKGQVDKANILFQKMEENG 512
Query: 135 KIPSRTLYDTLIK 147
P Y L++
Sbjct: 513 CSPDLITYSILMR 525
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 34/165 (20%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P++ T IL E + + G PDV T+T ++ G C R E
Sbjct: 121 GLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEA 180
Query: 71 MELLNEAIERGVTPNVVTLIHL-HNVIDIGHI----------------------PRTITF 107
+L + G TPNVVT L + +G+I P I++
Sbjct: 181 TKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISY 240
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ +I LC VG ++A+ L M + G P+ + LI L ++
Sbjct: 241 SIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKE 285
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C FEA K+ + + ++ T+ L A+E+ + +G++PD
Sbjct: 423 CKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDA 482
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
Y++++ GFCK G+ ++ L + E G +P+++T
Sbjct: 483 MAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLIT 519
>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 408
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 63/105 (60%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+G+KPD+ TY ++MDG+C V ++ + N ++RGVT NV T+ + IP T
Sbjct: 253 EGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDT 312
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I ++++I C G+I +AL L+ M++ G+ P+ Y++++ L
Sbjct: 313 IAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYAL 357
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + +A+ + + M G NV T + + M+ K + PD Y++++DGF
Sbjct: 269 YCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQE----MHCKE--IIPDTIAYSSLIDGF 322
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
CK GR + +EL++E +RG PN+ IT+N+++ ALC + ++
Sbjct: 323 CKSGRIPQALELVDEMHDRGQPPNI------------------ITYNSILYALCKIHHVE 364
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K + LL + G P Y L L
Sbjct: 365 KTIALLRKIKVKGIQPDAYTYTILTNGL 392
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +A +++D M D G PN+ TY +IL A +L +K G++PD
Sbjct: 322 FCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPD 381
Query: 51 VYTYTAVMDGFCKVGRSNEVMELL 74
YTYT + +G K GR E E+
Sbjct: 382 AYTYTILTNGLFKDGRLEEAREIF 405
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A+++ + + PDV+TY A++ GFC VGR + + L N+ + L
Sbjct: 172 DAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFND-------------MKLE 218
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
NV + TFN ++ A C G + + ++ +M + G P Y++L+
Sbjct: 219 NVEADEY-----TFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLM 266
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 40/136 (29%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYT---------------------AVMDGFCKVGRSN 68
Y+I ++ ++ K G+KPD++TY +++G CKVG +
Sbjct: 79 YSIALSFHQKLHFK--GIKPDLFTYNVLINCFSQLGHTHFLDRVSYETLINGLCKVGETR 136
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHN------VIDIGH-----------IPRTITFNNVI 111
+ LL E E+ V +VV + N ++D P T+N +I
Sbjct: 137 AALRLLKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMI 196
Query: 112 QALCGVGKIDKALLLL 127
C VG++ A+ L
Sbjct: 197 YGFCVVGRLKDAIGLF 212
>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rehmannii]
Length = 420
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A V D + G P+V +Y L E + + ++ G++PD
Sbjct: 141 FCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPD 200
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH---- 100
VYTY+ +++G CK ++ EL +E + +G+ PN VT L + +D+
Sbjct: 201 VYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYK 260
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P IT+N ++ LC G +++A L+ M G P + Y TLI
Sbjct: 261 QMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLI 313
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 246 HCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPD 305
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TYT ++DG CK G + E I+ + + V LI L
Sbjct: 306 KFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLR 365
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T T+ +I C G + K LL M +G +P Y+ L+
Sbjct: 366 EMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLM 418
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA + D M + PNV T+ +L EA + +++ G+ P+
Sbjct: 274 CSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNA 333
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYT ++D +CK GR + L N I+RG+ P V T LI ++
Sbjct: 334 MTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNE 393
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +T+N +I +LC G+ KA+ LL M+E G PS Y+TL+
Sbjct: 394 MVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLM 445
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPD 50
YC +A + + M D G P V+TY L +A LMN + + L D
Sbjct: 343 YCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSAD 402
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V TY ++D CK G S + ++LL+E E+G+ P+ VT LI
Sbjct: 403 VVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRT 462
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G +T N +I+ C G+++ A LL M E G +P+RT Y+ + +++ ++
Sbjct: 463 RMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEK 521
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A +V M G PNV TY IL EA + + + L+P+
Sbjct: 238 FCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPN 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ +++GFCK NE + L N+ ++GV PN +T+ +
Sbjct: 298 VVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPN------------------AMTYTTL 339
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I A C G+++ A L +M + G P + Y+ LI L
Sbjct: 340 IDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGL 378
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPDV 51
C K + +A K++D MF+ G +P+ TY T+++ Y N++ G + +V
Sbjct: 414 CKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANV 473
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIP 102
T+ ++ GFC GR + LLNE +ERG+ PN T I +++ G +P
Sbjct: 474 VTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVP 525
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME---LLNEAIERGVTPNVVTLI 90
A +++ ++K G+ P+V TY ++DG+CK+GR ++ + +L E + +G+ PN VT
Sbjct: 173 RAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYN 232
Query: 91 HL-------HNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L NV G P +T+N +I LC GK+D+A+ L M
Sbjct: 233 ILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSS 292
Query: 134 GKIPSRTLYDTLI 146
P+ ++ LI
Sbjct: 293 DLEPNVVTHNVLI 305
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------- 91
+V ++ V++G CKVG+ N +++ + GV+PNV+ TLI
Sbjct: 154 NVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKAD 213
Query: 92 --LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L ++ G P +T+N +I C + A+ + M G P+ Y+ LI L
Sbjct: 214 AILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGL 273
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 20/140 (14%)
Query: 27 VTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
V IL +E + G K + + ++ G K + ++ + E I+R + NV
Sbjct: 96 VRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNV 155
Query: 87 VTL-IHLHNVIDIGHI----------------PRTITFNNVIQALCGVGKID---KALLL 126
++ I ++ + +G + P IT+N +I C +G+I KA +
Sbjct: 156 ISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAI 215
Query: 127 LFLMYEHGKIPSRTLYDTLI 146
L M G P+ Y+ LI
Sbjct: 216 LKEMVAKGICPNEVTYNILI 235
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 33/170 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA V++ M + G P + TYT++ EA + +++ +G +PD + YTA++
Sbjct: 95 EAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALI 154
Query: 59 DGFCKVGRSNEVMELLNEAIERG----VTPNVVTLIHL------------------HNVI 96
G CK G+ E L EA R P+VVT L +
Sbjct: 155 KGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAV 214
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G IP +T+ ++I LC +G++++ M G P Y LI
Sbjct: 215 ERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 264
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 25 PNVTTYT-----------ILEAYEMLMN-VKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
P+V TYT ILEA ++ + G PD TYT+++DG CK+GR E E
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243
Query: 73 LLNEAIERGVTPNVVTLIHL-------------HNV----IDIGHIPRTITFNNVIQALC 115
+E RG P+ VT L H V + G + T+T+N ++ LC
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++ +A M E G + + Y L+
Sbjct: 304 KAGRVAEAYATFLAMEERGCVATVVTYSALM 334
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C++ + A ++ M D G PN+ +Y I+ +AY + L PD
Sbjct: 337 FCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPD 396
Query: 51 VYTYTAVMDGFC-KVGRSNEVMELLNEAIERGVTPNV-----------------VTLIHL 92
VYT+ A + G C ++ ++ +EL + +G +PN+ V L
Sbjct: 397 VYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIF 456
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G P + FN +I+ LC G++D+A L +F E P Y +L+ L +
Sbjct: 457 REMVSRGVAPDVVVFNTLIRWLCIAGRVDEA-LEVFRELERRSAPDAWSYWSLLDGLSR 514
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V++ G P+ TY + +A+++L + P
Sbjct: 18 CREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTT 77
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYTA++DG K GR +E M +L + +E+G +P + T+ VI
Sbjct: 78 VTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLK------------------TYTVVI 119
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L G++++A + M +G P +Y LIK L
Sbjct: 120 DGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGL 157
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 29/154 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +V M +G + TY I+ EAY + ++ G V TY+A+M
Sbjct: 275 KAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALM 334
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DGFC G + +EL ++RG PN+V ++N +I+ LC G
Sbjct: 335 DGFCSEGNVSAAVELFRRMLDRGCEPNLV------------------SYNIIIRGLCRAG 376
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
K+ KA + + P ++ + L Q+
Sbjct: 377 KLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQR 410
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGH- 100
PD+ +T V++G C+ R +E +L A+ G P+ VT L V D
Sbjct: 5 PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64
Query: 101 ---------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+P T+T+ ++ L G++D+A+ +L M E G P+ Y +I L +
Sbjct: 65 LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C D A V + + G PN+ IL+A +++ + +G PD+
Sbjct: 366 CQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDI 425
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVIDI--- 98
+TY V++G CK+G ++ L+ +AI +G P+V T + L N I+I
Sbjct: 426 WTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDR 485
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P IT+N+++ LC GK + + LM E G +P+ Y+ L +
Sbjct: 486 MWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESF 540
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 30/162 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + EA +++D + G P+V TY ++EA L + N+G +PD
Sbjct: 261 FCQRAMLNEAIRLLDGV-GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPD 319
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TY +++DG+CK+G ++L + +G P+ T+ ++
Sbjct: 320 GFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPD------------------ESTYCSL 361
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I LC G ID+A+ + E G P+ L +TL+K L QQ
Sbjct: 362 INGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQ 403
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 29/137 (21%)
Query: 22 GYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G+ P+V T+ T+++ Y E++ + N G+ PDV TY ++++G CK G+ +V
Sbjct: 455 GHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDV 514
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
M +E+G PN+ IT+N + ++ C K+++AL L+ M
Sbjct: 515 MGTFKLMMEKGCVPNI------------------ITYNILTESFCKARKVEEALNLIEEM 556
Query: 131 YEHGKIPSRTLYDTLIK 147
G P + TL+K
Sbjct: 557 QNKGLTPDVVNFGTLMK 573
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + AR++++ M G + Y + EA+E+ + G+ PD
Sbjct: 156 FCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPD 215
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHN 94
+ + ++ C+ G E LLN+ ++RGV+PN+ T+ I L +
Sbjct: 216 IMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLD 275
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P IT+N +I LC K+ +A L M G P Y+++I
Sbjct: 276 GVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSII 327
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA V + M P+V +Y + +A+++ M +++ G+ PD
Sbjct: 86 YGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPD 145
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------------IHLHNVID 97
VYT+T M FC+ R + LLN +G + V + H + +
Sbjct: 146 VYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFE 205
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+G P + FN +I LC G + ++ LL + + G P+ + I+ Q+
Sbjct: 206 EMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQR 264
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + M + G PN+ TY IL EA ++ ++N GL PDV
Sbjct: 506 CKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDV 565
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------H 93
+ +M GFC G + +L E+ + + ++ +
Sbjct: 566 VNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFN 625
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P + T+ +I C G I+ L + E G IPS T + ++ L
Sbjct: 626 KMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCL 681
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+G PD YTY ++DGFCK G N L IE+G+ IP
Sbjct: 630 NGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGL------------------IPSL 671
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
TF V+ LC ++ +A+ ++ LM G +P
Sbjct: 672 TTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPE 705
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K+ + M +NG+ P+ TY ++ Y L+ GL P + T+ V++
Sbjct: 620 AEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLN 679
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
C R +E + +++ + +G+ P VV I
Sbjct: 680 CLCLKRRVHEAVGIIHLMVHKGIVPEVVNTI 710
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C D +A V G P++ Y IL A +++ + G KPD
Sbjct: 445 FCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPD 504
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVIDI-- 98
++TY +++G CK+G ++ L+ +AI +G P++ T + L + I++
Sbjct: 505 IWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVN 564
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P IT+N ++ LC K ++ + + M E G P+ Y+T+I+ L
Sbjct: 565 RMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESL 620
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +I G P++ TY L A E++ + + G+ PDV
Sbjct: 516 CKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDV 575
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++G CK +S EVME+ E+G PN+ IT+N +I
Sbjct: 576 ITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNI------------------ITYNTII 617
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++LC K+++A+ LL M G P + TLI
Sbjct: 618 ESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLI 652
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K E+ ++ D + G PN+ T+ I A +L V +GL+PDV
Sbjct: 306 CKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDV 365
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
TY V+ G C+ R E E L++ + G PN T L +
Sbjct: 366 VTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKD 425
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P T+ +++ C G D+A+ + G PS +Y+TLIK L QQ
Sbjct: 426 AVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQ 483
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + A +++ + G P+V TY ++EA E L + N G +P+
Sbjct: 341 CKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPND 400
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
+TY +++DG+CK G + +L +A+ +G P+ T L N
Sbjct: 401 FTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKD 460
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P I +N +I+ LC G I AL L+ M E G P Y+ +I L
Sbjct: 461 GLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGL 515
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K +A +++ G+ P+ TY L +A + + GL+P
Sbjct: 410 YCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPS 469
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--LI--------------HL-H 93
+ Y ++ G C+ G ++L+NE E+G P++ T LI HL
Sbjct: 470 IIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIG 529
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ I G IP T+N ++ C K+D A+ L+ M+ G P Y+TL+ L
Sbjct: 530 DAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGL 585
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A + +K +G PD YTY ++DGFCK G N+ + L E IE+G
Sbjct: 700 ALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGF------------ 747
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
IP TF V+ LC K+ +A+ ++ LM + +P
Sbjct: 748 ------IPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP 784
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 52/165 (31%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR-----------------SNEVM----- 71
+A+++ M +K+ ++ DVYTYT + FC+ GR SN V
Sbjct: 208 QAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVV 267
Query: 72 -------------ELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
EL +E +E + P+V T L+H V+ G
Sbjct: 268 TGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVC 327
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TFN IQ LC G +D+A+ LL + G P Y+T+I
Sbjct: 328 PNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVI 372
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
AR++ D M + P+VTT+ +LE+ + V G+ P+++T+ +
Sbjct: 278 RARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFI 337
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHI 101
G CK G + + LL G+ P+VVT LH +++ G
Sbjct: 338 QGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFE 397
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P T+N++I C G + A +L G P Y +L+ Q
Sbjct: 398 PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQ 447
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E ++ M + G PN+ TY + EA ++L +K+ GL PDV ++ ++
Sbjct: 593 EVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLI 652
Query: 59 DGFCKVGRSNEV------MELLNEAIERGVTPNVV------------TLIHLHNVIDIGH 100
GFCKVG + ME + T N++ L + G
Sbjct: 653 TGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGC 712
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ +I C G +++ L E G IPS T + ++
Sbjct: 713 DPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVL 758
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + ++ G+ PD
Sbjct: 146 FCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E ++ G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYR 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 318
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H I A + ++ GL+P V ++ +M+G+ K+G +E L +
Sbjct: 137 YFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSV 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++B G +P +TF +I C G+
Sbjct: 197 MQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M +P Y+TLI
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLI 283
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 63/198 (31%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C ++ +A ++ D M BNG PN T+T L
Sbjct: 217 CKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDL 276
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A++++ + GLKPD TYT ++DG CK G E
Sbjct: 277 ITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKR 336
Query: 77 AIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
I+ + + V LI L ++ +G P T+ +I C G
Sbjct: 337 MIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGD 396
Query: 120 IDKALLLLFLMYEHGKIP 137
+ LL M G +P
Sbjct: 397 VWTGSKLLKEMQRXGYVP 414
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKP++ TYT +++ CK G +LL E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G PNVVT
Sbjct: 407 MQRXGYVPNVVT 418
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKVI+++ Y V + YE + G +Y + +M FCK G
Sbjct: 101 FDTCRKVIEHLMKLKYFKLVWGF-----YEESLEC---GYPASLYFFNILMHXFCKEGEI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I IG + P T++ +
Sbjct: 153 RLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M ++G +P+ + TLI
Sbjct: 213 INGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLI 248
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 28/161 (17%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V D M +NGY P+V T++ L A E++ ++ G KP++ TYT ++DGFC
Sbjct: 369 VYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFC 428
Query: 63 KVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI-------GHIPRTI 105
K G+ E +L E + +G + N V LI +H +D+ G P
Sbjct: 429 KKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIF 488
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN++I LC V +++ AL L M G I + ++TLI
Sbjct: 489 TFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLI 529
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+ + M G P++ T IL A E + ++ + G PD+ TY ++++G C
Sbjct: 579 LFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLC 638
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
K GR E + L + G+ P+ +IT+N +I LC G D
Sbjct: 639 KRGRIQEALNLFEKLQAEGIQPD------------------SITYNTLICWLCREGAFDD 680
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
A LL+ E+G +P+ ++ L+ +Q
Sbjct: 681 ACFLLYRGVENGFVPNDVTWNILVYNFGKQ 710
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K F A ++++ M G PN+ TYTIL EA +L + G +
Sbjct: 393 CKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNT 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
Y A++ CK G+ +E +++ E +G P++ T L +
Sbjct: 453 VGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRD 512
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G I ++TFN +I A G+I +AL L+ M G Y+ LIK L
Sbjct: 513 MVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKAL 567
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78
F+ H + I EA +++ ++ G D TY ++ CK G + + L E I
Sbjct: 525 FNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMI 584
Query: 79 ERGVTPNVVT---LIH-------LHNVIDI-------GHIPRTITFNNVIQALCGVGKID 121
+G+TP+++T LI+ +HN ++ G P +T+N++I LC G+I
Sbjct: 585 RKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQ 644
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+AL L + G P Y+TLI L ++
Sbjct: 645 EALNLFEKLQAEGIQPDSITYNTLICWLCRE 675
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 33/166 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+++ MF G P+V T+ +LE +++ + G P+ TY +M
Sbjct: 263 EALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLM 322
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------------------VIDIGH 100
G CK R +E LL++ PNVV L N +I+ G+
Sbjct: 323 HGLCKTCRIDEAQALLSKV----PGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGY 378
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P TF+ ++ LC G AL L+ M G P+ Y LI
Sbjct: 379 VPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILI 424
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N+ A ++ M +G PN Y L EA ++L + G PDV
Sbjct: 221 CMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDV 280
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
T+ V+ GFC++ R E +L++ I +G TPN +T +L H + I
Sbjct: 281 NTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSK 340
Query: 102 ---PRTITFNNVIQALCGVGKIDKALLLLF-LMYEHGKIPSRTLYDTLIKKLDQQ 152
P + FN ++ G++++A ++ M +G +P + TL+ L ++
Sbjct: 341 VPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKK 395
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 81 GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
G P+V + + ++++ G P TF V++ALC V ++D A LLL M +HG +P+
Sbjct: 188 GNCPSVASNV-FYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSM 246
Query: 141 LYDTLIKKLDQQ 152
+Y TLI L ++
Sbjct: 247 IYQTLIDALSKR 258
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C A + + M G+ P++ TY I EA + ++ +G++PD
Sbjct: 602 FCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPD 661
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY ++ C+ G ++ LL +E G PN VT
Sbjct: 662 SITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVT 699
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 25/165 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + F V+D + G P+V + Y+ML + G+ P+ YT+ VM
Sbjct: 169 YCCEPSFRSYNVVLDVLV-VGNCPSVASNVF---YDML----SKGVSPNDYTFGLVMKAL 220
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRT 104
C V + LL + + G PN + TLI L + +G P
Sbjct: 221 CMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDV 280
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TFN VI C + ++ + L+ M G P+ Y L+ L
Sbjct: 281 NTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGL 325
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + + + G P ++ L E + + ++ + + PD
Sbjct: 233 FCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPD 292
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+TY+ ++ G CK GR + +L +E +RG+ PN +T L H
Sbjct: 293 VFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYH 352
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P + +N ++ LC VG ++KA L+ M G P + Y TLI
Sbjct: 353 QMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLI 405
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + D A ++ M + G + +T L +A L + G+KPD
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD 467
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT V+DG+CK G +LL E + ++ GH P IT+N +
Sbjct: 468 DATYTMVIDGYCKKGNVKMGFKLLKE-------------MQIN-----GHKPGVITYNVL 509
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ LC G++ A +LL M G P Y+ L++
Sbjct: 510 MNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLE 546
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A M G P++ Y L +A +++ ++ G+KPD
Sbjct: 339 CRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDK 398
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
TYT ++DG+CK G ME+ E GV + V L
Sbjct: 399 ITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLRE 458
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ G P T+ VI C G + LL M +G P Y+ L+ L +Q
Sbjct: 459 MVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQ 516
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G P V Y +++ FCK G + + NE +RG+ P V+
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277
Query: 90 IHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L ++ I P T++ +I LC G++D A L M + G P+ + LI
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALI 335
>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + +A+++++ MF G P+V TYT + +A +ML + G KP+
Sbjct: 418 FCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPN 477
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+YTA+++G CK G S E E++N + E PN +T L+H +
Sbjct: 478 TVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVR 537
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+I G P + N +IQ+LC K+D+A
Sbjct: 538 EMIKKGFFPTPVEINLLIQSLCQEEKVDEA 567
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E R +++ M D+ P+ TY EA E L + + D
Sbjct: 348 CKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVD 407
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+A++ FC+ GR ++ E++NE +G P+VV T+ +V
Sbjct: 408 KVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVV------------------TYTSV 449
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC K+D+A +L MY+HG P+ Y L+ L
Sbjct: 450 INGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGL 488
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 63/209 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+K++ M+ +G PN +YT L EA EM+ + D P+
Sbjct: 454 CQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNA 513
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP--------------------------- 84
TY+ +M GF + G+S+E +L+ E I++G P
Sbjct: 514 ITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQ 573
Query: 85 -----------NVVTLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
N T+IH L ++ P +T+ +I AL G+
Sbjct: 574 CLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGR 633
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
I++A L M G IP+ Y T+I +
Sbjct: 634 IEEATKLAMKMLRVGLIPTPVTYRTVIHQ 662
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 31/137 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C K+D A ++D M+ + HP+V TYT I EA ++ M + GL P
Sbjct: 593 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPT 652
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY V+ +C++GR ++++LL + + R RT +N V
Sbjct: 653 PVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQEC-------------------RT-AYNQV 692
Query: 111 IQALCGVGKIDKALLLL 127
I+ LC G +++A LL
Sbjct: 693 IEKLCSFGNLEQAYKLL 709
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L +A E++ + G PD +Y VM CK R EV L
Sbjct: 300 PNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLL 359
Query: 74 LNEAI-ERGVTPNVVTL-IHLHNVIDIGHIPRTITF----------------NNVIQALC 115
+ + + + + P+ VT +H + GH + F + ++ + C
Sbjct: 360 MEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFC 419
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G++DKA ++ M+ G IP Y ++I L Q+
Sbjct: 420 REGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQE 456
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
++P+V TY ++ G+C + R + MEL+ E +G +P+ I+
Sbjct: 298 IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPD------------------KIS 339
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLIKKLDQQ 152
+ V+ LC +I + LL+ M + +P + Y+T + L +
Sbjct: 340 YYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 386
>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
Length = 532
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHP-----NVTTYTIL------EAYEMLMNVKNDGLKPD 50
Y K D E +ID M NG P N+ Y + EA ++ GL PD
Sbjct: 271 YATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPD 330
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ +Y ++DG CK+GR + M + I+ G++P++V F N+
Sbjct: 331 IISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIV------------------VFTNL 372
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I GK +KA L + M + G P+ ++ T+I KL
Sbjct: 373 IHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKL 411
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ MFD P+ TTY L EA +L + G P+
Sbjct: 167 CKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNG 226
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY+ ++D CK G E E+LN I+ PNV T L+ ++N+ID+
Sbjct: 227 VTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDL 286
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN I A G++D+A+L M + G +P Y T+I L
Sbjct: 287 MVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGL 341
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 31/160 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C++ EA +I M ++G H PNV +YT + +AY + + + G+ P
Sbjct: 95 CDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPP 154
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV T +++DG CKV ++ E+L + ++ + P+ T+N+
Sbjct: 155 DVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCT------------------TYNS 196
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G++ +A+ +L M HG+ P+ Y LI L
Sbjct: 197 LVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCL 236
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ M D G P V +T + EA + + +KP+V +Y A++
Sbjct: 384 KAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAII 443
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNNVIQALCGV 117
G+ G+ +EV++LL++ + G+ PN VT L +++ +G P T N +I + C
Sbjct: 444 HGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLSMGLKPDVATCNTLIDSCCED 503
Query: 118 GKIDKALLLL 127
G+I+ L L
Sbjct: 504 GRIEDVLTLF 513
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVV---TLIH--------- 91
G PDV++YT ++ G C + E ++L++ E G PNVV T+IH
Sbjct: 79 GCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVG 138
Query: 92 -----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G P +T N++I LC V +DKA +L M++ +P T Y++L+
Sbjct: 139 KAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLV 198
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + EA +++ M +G PN TY++L EA E+L ++ P+
Sbjct: 201 YLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPN 260
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-----------------VVTLIHLH 93
V TY ++ G+ G E+ L++ ++ GV P+ ++ +
Sbjct: 261 VATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFN 320
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +P I++ +I LC +G++D A+ M + G P ++ LI
Sbjct: 321 KMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLI 373
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
E K++D M G PN T+ L L ++ + GLKPDV T ++D C+ GR +
Sbjct: 454 EVLKLLDDMLSVGLKPNAVTFNTL-----LDDMLSMGLKPDVATCNTLIDSCCEDGRIED 508
Query: 70 VMELLNEAIERGVTPNVVT 88
V+ L E + + + VT
Sbjct: 509 VLTLFREMLSKAAKTDTVT 527
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A +++ M +G P+ TYT L A EM + ++G+ D
Sbjct: 392 FCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 451
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLH 93
TYTA++ G K GRS + +L E +E G+ P+ T HL
Sbjct: 452 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 511
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P +T+N V+ C +G++ A +LL M G P+ Y+ L+
Sbjct: 512 EMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILL 564
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 67/166 (40%), Gaps = 32/166 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
AR V D M G P V T+ L A LM G+ PDVYTY A
Sbjct: 261 ARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLM--AKAGIAPDVYTYGAF 318
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------NVIDIGH 100
+ G CK GR + ME+ E ERG+ PN V TLI H + G
Sbjct: 319 IQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGV 378
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +N ++ C V + A ++ M + G P + Y TLI
Sbjct: 379 KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLI 424
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++ M + G P+ TTYT++ ++ L ++N G P + TY VM
Sbjct: 470 DAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVM 529
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
+GFC +G+ LLN + GV PN +T +N++ GH
Sbjct: 530 NGFCSLGQMKNADMLLNAMLNIGVCPNDIT----YNILLDGH 567
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
++ EAY +++ + G+ P+ + +M + G+ + +E + RGV P VVT
Sbjct: 222 SVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFN 281
Query: 91 HLHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L + + G P T+ IQ LC G+I A+ + M E
Sbjct: 282 TLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCER 341
Query: 134 GKIPSRTLYDTLI 146
G P+ + TLI
Sbjct: 342 GLNPNTVVLTTLI 354
Score = 39.3 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMNVK-NDGLKPD 50
+C D K + M + G +P + TY + ++ +ML+N N G+ P+
Sbjct: 497 FCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPN 556
Query: 51 VYTYTAVMDGFCKVGRSNEVMEL 73
TY ++DG CK G+ + EL
Sbjct: 557 DITYNILLDGHCKHGKVRDTEEL 579
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C+ ++ A +++D M +G PNV Y+ +L Y ++ ++ G+KPDV
Sbjct: 169 CDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDV 228
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+T ++D CK G++ + ++ + ++RG+ PNVV T+N +I
Sbjct: 229 IMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVV------------------TYNVLI 270
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+LC G + +AL L M + G P Y+TLI L
Sbjct: 271 NSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGL 308
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 30/175 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + KV + M G P+V +T L +A ++ + GL+P+
Sbjct: 203 YCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPN 262
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNVIDIGHI----- 101
V TY +++ CK G E + L E ++GV P+VVT + L V+++
Sbjct: 263 VVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLE 322
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +TFN+VI LC +G++ +A+ + +M E G + + Y+ LI
Sbjct: 323 EMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLI 377
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN +YT + EA +L +++ G++ DV TY ++ G C + +EL
Sbjct: 121 PNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALEL 180
Query: 74 LNEAIERGVTPNVVTLIHLHNVI-------DIGHI----------PRTITFNNVIQALCG 116
L+E GV PNVV L D+G + P I F +I LC
Sbjct: 181 LDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCK 240
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GK KA + +M + G P+ Y+ LI L
Sbjct: 241 EGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSL 273
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML--MNVKNDGLKP 49
C + EA + M D G P+V TY L EA L M + ++P
Sbjct: 274 CKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEP 333
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLH------NVI 96
DV T+ +V+ G CK+GR + +++ ERG N+VT + +H N++
Sbjct: 334 DVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLM 393
Query: 97 D----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D G P + T++ +I + ++D+A L M + G Y L+ + QQ
Sbjct: 394 DELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQ 453
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 29/165 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++D + +G P+ TY+IL A + L ++ G+K +++ Y ++
Sbjct: 389 AMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLA 448
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
C+ G M L NE +++ + + T+IH + +++D G P
Sbjct: 449 AMCQQGMMERAMGLFNE-MDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAP 507
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+T++ +I +G +++A +L M G +P ++D+LIK
Sbjct: 508 DAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIK 552
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +++I M D G P+ TY++L EA +L + G PDV
Sbjct: 485 CKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDV 544
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVT--PNVVTLI 90
+ +++ G+ G++++V++L++E + V P +++ I
Sbjct: 545 AVFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTI 585
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ +YT VM G C R+ E + LL GV +VV T+
Sbjct: 120 RPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVV------------------TY 161
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ LC ++D AL LL M G P+ +Y L++
Sbjct: 162 GTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLR 201
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
+++ ++ ++GL PD TY+ +++ + K+G E +L + G P+V
Sbjct: 495 QLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVA--------- 545
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
F+++I+ G+ DK L L+ M + T+I+ Q P
Sbjct: 546 ---------VFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTIIRLPQQTP 593
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 212 VYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 324
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M P++ TY L +A+ ++ + GLKPD TYT ++D
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 325
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
G CK G + E I+ + V LI L ++ +G P
Sbjct: 326 GCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKP 385
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 386 DARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 293 CKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDD 352
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G + +LL E
Sbjct: 353 VVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 412
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 413 MQRDGHVPSVVT 424
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 159 RIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC KID A L M G +P+ + TLI
Sbjct: 219 INGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLI 254
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 135 FCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 194
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 195 VYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYK 254
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 255 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 307
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 240 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPD 299
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + E I+ + V LI L
Sbjct: 300 KITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLR 359
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 360 EMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 90 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 141
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 142 RIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 201
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC KID A L M G +P+ + TLI
Sbjct: 202 INGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLI 237
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + + + G P ++ L E + + ++ + + PD
Sbjct: 233 FCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPD 292
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+TY+ ++ G CK GR + +L +E +RG+ PN +T L H
Sbjct: 293 VFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYH 352
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P + +N ++ LC VG ++KA L+ M G P + Y TLI
Sbjct: 353 QMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLI 405
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + D A ++ M + G + +T L +A L + G+KPD
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD 467
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT V+DG+CK G +LL E + ++ GH P IT+N +
Sbjct: 468 DATYTMVIDGYCKKGNVKMGFKLLKE-------------MQIN-----GHKPGVITYNVL 509
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ LC G++ A +LL M G P Y+ L++
Sbjct: 510 MNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLE 546
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P++ Y L +A +++ +K G+KPD TYT ++DG+CK G
Sbjct: 354 MLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGD 413
Query: 67 SNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNN 109
ME+ E GV + V L +++ G P T+
Sbjct: 414 LESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTM 473
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
VI C G + LL M +G P Y+ L+ L +Q
Sbjct: 474 VIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQ 516
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G P V Y +++ FCK G + + NE +RG+ P V+
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277
Query: 90 IHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L ++ I P T++ +I LC G++D A L M + G P+ + LI
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALI 335
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA+ +I+ M + G PNV TY L EA ++ + N G PD
Sbjct: 394 FCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPD 453
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V +Y ++ G+CK R +E +L +E +G+TPN +IT +
Sbjct: 454 VLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPN------------------SITHTTL 495
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G+ A L M HG P Y TL+
Sbjct: 496 ISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLL 531
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V M P++ TY+ L E+ +L + + ++PDV
Sbjct: 325 CKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDV 384
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VIDI 98
T++ +D FCK G +E ++N IERG+ PNVVT L + V DI
Sbjct: 385 VTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDI 444
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G P +++N +I+ C +ID+A L M G P+ + TLI L Q
Sbjct: 445 MVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQ 501
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C+ + V+ +F G+ P++ T+ I+EA E L + + G +P
Sbjct: 148 CLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQP 207
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------LIH-----L 92
VYT+T +++G CK+G+++ + + + +E P VV+ L++
Sbjct: 208 TVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLF 267
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ IG P +T+N++I +C G+ +A +L M E P + L+ L
Sbjct: 268 YHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDAL 324
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EARKV D M + G P+V +Y IL EA ++ + + GL P+
Sbjct: 429 YCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPN 488
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
T+T ++ G C+ GR EL + G P++ IT++ +
Sbjct: 489 SITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDL------------------ITYSTL 530
Query: 111 IQALCGVGKIDKALLLL 127
+ C G +D+AL L
Sbjct: 531 LSGFCKHGHLDEALALF 547
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + +M G P V TY L +A + + +KPDV
Sbjct: 255 CKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDV 314
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
T++ ++D CK G E + + + I+ + P++VT LIH L+
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNE 374
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P +TF+ + C G + +A ++ LM E G P+ Y++L+
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLM 426
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCNK + A D M G P V+TY +L EA ++ + GL PD
Sbjct: 306 YCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPD 365
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
TY +++G+C+ G + L +E I +G+ P VT L
Sbjct: 366 SVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFE 425
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G P I FN +I C G +D+A +L M + +P ++TL++
Sbjct: 426 KIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQ 479
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
YC++ AR + D M G P+ TY + EA ML +K GL+P
Sbjct: 236 YCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPT 295
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY ++DG+C G + ++ + G+ P V T LIH +
Sbjct: 296 AVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIK 355
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G +P ++T+N +I C G + KA L M G P+R Y +LI L ++
Sbjct: 356 EMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKR 414
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY---------EMLMNV-KNDGLKPDV 51
C + +A++ I M G PNV TY TI+ Y M+ ++ K G+KPD
Sbjct: 202 CKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDS 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY + + G CK G+ E +L + E G+ P VT L
Sbjct: 262 YTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDK 321
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G +P T+N +I AL K+D+A ++ M E G +P Y+ LI
Sbjct: 322 MVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILI 373
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
A+ ML + + PD T+ +M G C+ G+ EL+ E RG+ P+ + TLI
Sbjct: 454 RAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLI 513
Query: 91 HLHN--------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++ ++ IG P +T+N +IQ LC + D A LL M G
Sbjct: 514 SGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGIT 573
Query: 137 PSRTLYDTLIK 147
P+ Y +LI+
Sbjct: 574 PNDNTYLSLIE 584
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKPDV 51
C + AR++I+ M G P+ +Y T++ Y ++K+ G P +
Sbjct: 482 CREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTL 541
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
TY A++ G CK + +LL E I +G+TPN T + L
Sbjct: 542 LTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSL 582
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A+E +K G+ P V+ ++ F K R+ + L E + +VVT
Sbjct: 139 DAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVT----- 193
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
FN +I LC GK+ KA + LM G P+ Y+T+I
Sbjct: 194 -------------FNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTII 233
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 212 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPD 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + E I+ + + V LI L
Sbjct: 317 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLR 376
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 377 EMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 25/152 (16%)
Query: 12 RKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 111 RKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDIRLAQ 162
Query: 72 ELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQAL 114
+ + + G+ P+VV+ L N ++ G P T++ +I L
Sbjct: 163 SVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL 222
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C K+D A L M G +P+ + TLI
Sbjct: 223 CKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254
>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Cucumis sativus]
Length = 830
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
Y + EA ++ M + G P+V T+ ++EA +ML ++ GL P
Sbjct: 526 YVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPS 585
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNVIDI-- 98
V TYT +M+ +C+VG E+ L+E V P VT +H + +
Sbjct: 586 VVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLE 645
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P ++T+N +IQ C +I KAL L +M H P++ Y LI L
Sbjct: 646 YMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINAL 701
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
F R V+ +F NG I EA L DV Y ++DG+ ++
Sbjct: 482 FAQRAVLLGLFKNG--------NISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIA 533
Query: 69 EVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI----GHIPRTITFNNVI 111
E M+L + IERG+TP+VVT L+ ++++ G +P +T+ ++
Sbjct: 534 EAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLM 593
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
A C VG + + L M + +P+ Y LIK L +Q
Sbjct: 594 NAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQ 634
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKN-----------DGLKPDV 51
C EA D M +G P+V TY L +L+ + + GL PD+
Sbjct: 317 CVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDL 376
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C++G E ++L E + RG NV I +N ++
Sbjct: 377 VTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNV------------------IFYNMLL 418
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC VG+I++AL L M P +Y LI L ++
Sbjct: 419 SCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKE 459
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 76/211 (36%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C + D EARK+++ + G P+V TYT L
Sbjct: 561 FCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPT 620
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
E+ ++L + GL PD TY ++ FCK + ++L N
Sbjct: 621 HVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYN 680
Query: 76 EAIERGVTPNVVTLIHLHNVI----DIGHIPR-------------TITFNNVIQALCGVG 118
+ P VT L N + D+ + R +T+ +I+A C G
Sbjct: 681 MMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKG 740
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ KAL M G + S Y +I +L
Sbjct: 741 QVSKALGYFNQMLAKGFVISIRDYSAVINRL 771
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + +A ++ + M + P TY +L + M++++++ +
Sbjct: 665 CFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITL 724
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY ++ C G+ ++ + N+ + +G VI I ++
Sbjct: 725 KKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGF------------VISIR------DYSA 766
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
VI LC G I +A +M G P + T++ QQ
Sbjct: 767 VINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQ 809
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 36/168 (21%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVY-------------TYTA 56
+A VI M D + +V TY +L N+++ + DVY T +
Sbjct: 188 DALFVIAKMKDLNFQASVPTYN-----SLLHNMRHTDIMWDVYNEIKVSGAPQSECTTSI 242
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDI-----------G 99
++ G C+ + + + L+++ + V P++V++ + + +ID+ G
Sbjct: 243 LIHGLCEQSKLEDAISFLHDS-NKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNG 301
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ + ++N ++ LC G +D+AL M +HG P Y+TL K
Sbjct: 302 LLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAK 349
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---------LIHL 92
VKN GL D ++Y ++ G C G +E + ++ + GV P+VVT L+ L
Sbjct: 298 VKN-GLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGL 356
Query: 93 --------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
++ G P +T+ +I C +G I++AL L
Sbjct: 357 MSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKL 398
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA K+ G+ NV Y +L EA + ++ L+PD
Sbjct: 386 HCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPD 445
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEA-IERGVTPNVVTLIHLHNVIDIGHIPRT----- 104
Y+ ++ G CK G +L + ++R + L + G+I
Sbjct: 446 FIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFD 505
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +N +I + I +A+ L + M E G PS ++TLI
Sbjct: 506 TWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLI 558
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E K+ D G P++ Y L A+E++ ++ + PD TY +M
Sbjct: 380 ETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLM 439
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
G C +GR +E +L++E +RG+ P++VT L + +++ G
Sbjct: 440 RGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN 499
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+N +IQ LC G+ D A ++ M E+G P + Y +LI+ L +
Sbjct: 500 PTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 550
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ A D M + G V TY +L EAYE++ + GL D
Sbjct: 267 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALD 326
Query: 51 VYTYTAVMDGFCKVGRSNEVME-----------------------------------LLN 75
V+TY +++G CK G + +E L +
Sbjct: 327 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFD 386
Query: 76 EAIERGVTPNVV---TLIHLHNV---ID-----IGHI------PRTITFNNVIQALCGVG 118
EA+ RG+ P++V LI+ H+ ID +G + P +T+N +++ LC +G
Sbjct: 387 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 446
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+A L+ M + G P Y+TLI
Sbjct: 447 RVDEARKLIDEMTKRGIQPDLVTYNTLI 474
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P+ YTY V+ G+CKVGR +E +++ +E + +G P +
Sbjct: 216 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK-----------------PEAV 258
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I C GK+D ALL M E G + Y+ L+ L
Sbjct: 259 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 302
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ TY V+ GFC GR ++++ E ERG G P T+
Sbjct: 182 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERG-----------------GIAPNQYTY 224
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
VI C VG++D+A+ + M G++ P +Y+ LI
Sbjct: 225 GTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 264
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTY-TIL----------EAYEMLMNVKNDG-LK 48
+C++ A ++ M + G PN TY T++ EA ++ + G +K
Sbjct: 195 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 254
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
P+ Y A++ G+C G+ + + + +ERGV V T L+H
Sbjct: 255 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 314
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + G T+N +I C G + KAL + M G + Y +LI L +
Sbjct: 315 VEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSK 374
Query: 152 Q 152
+
Sbjct: 375 K 375
>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
Length = 458
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C +A +V++ M NG P+ TY+ IL Y L +++DG++P+V
Sbjct: 250 CKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNV 309
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++M+ CK GR + ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 310 VTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDL 369
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN +I A K+D+A+L+ M +HG P+ Y T+I L
Sbjct: 370 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 424
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE M+ + + G PDV +YT V++GF K G S++ +E + R ++PNVV
Sbjct: 186 LELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVV----- 240
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I ALC +DKA+ +L M ++G +P Y +++
Sbjct: 241 -------------TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSIL 281
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M PNV TY+ + +A E+L + +G+ PD TY++++ G+C G+
Sbjct: 230 MLGRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQ 289
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNN 109
E + LN+ GV PNVVT L N + G P T+
Sbjct: 290 PKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRT 349
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI------KKLDQ 151
++Q G + + LL LM +G P +++ LI +K+DQ
Sbjct: 350 LLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQ 397
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG P+ + IL +A + ++ GL P+
Sbjct: 354 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 413
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
V Y V+D CK G ++ M + I+ G+TPN++
Sbjct: 414 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNII 450
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + ++ G++PD
Sbjct: 146 FCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E ++ G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE + G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGF-----YEESLEC---GYPASLYFFNILMHSFCKEGEI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 153 RLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M ++G +P+ + TLI
Sbjct: 213 INGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A+ +ID M G P+ TYT L
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLK ++ TYT +++ FCK G +L+ E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKE 406
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 407 MQRDGYVPSVVT 418
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 28/165 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A +++ + GLKPD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-------TPNVVTLIHLHNVIDIGHIPR 103
TYT ++DG CK G E I+ + T + L +D + R
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 104 TI----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
+ T+ +I C G + L+ M G +PS
Sbjct: 371 EMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPS 415
>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKP 49
YC K +EA + D M G P++ TY L EA + ++ +GL P
Sbjct: 267 YCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHP 326
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
V TY +++ C+ G+ + LLNE ER V P+ VT L N
Sbjct: 327 GVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVK 386
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P TF +I C + ++D A LF M + G PS + Y L+
Sbjct: 387 KKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLV 440
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 29/163 (17%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPDVYTYTAVMDGF 61
KV M G PN+ + +L E E L+N +++ + PD++TY ++ +
Sbjct: 208 KVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLY 267
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDI-GHIPR 103
CK G E + + + GV+P++VT + L V+++ G P
Sbjct: 268 CKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPG 327
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+N++++ LC GKI A LL M E P +TLI
Sbjct: 328 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLI 370
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHP-NVTTYTILEAYEML------MNVKND----GLKPDV 51
C + +A ++++ M + P NVT T++ AY + M VK GLKPD
Sbjct: 339 CEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 398
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDIGHIPRT 104
+T+ A++ GFCK+ + E L E ++ G +P+ T L N + +P
Sbjct: 399 FTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDE 458
Query: 105 IT----------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ + +I+ LC + KI+ A + LM G +Y +L
Sbjct: 459 LSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSL 509
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 87/183 (47%), Gaps = 35/183 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
Y N +A +V ++M +G+ P++ T+L + Y+ ++ V G+
Sbjct: 162 YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRV---GV 218
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH----------- 93
P+++ + ++ CK G + +LLNE R + P++ TLI L+
Sbjct: 219 VPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALG 278
Query: 94 --NVIDIGHI-PRTITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++ G + P +T+N++I C V +++AL L +M G P Y+++++KL
Sbjct: 279 IQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 338
Query: 150 DQQ 152
++
Sbjct: 339 CEE 341
>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Cucumis sativus]
Length = 481
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDG 46
C CN N E + + GY P++ TY L EA E+ +K G
Sbjct: 134 CLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQG 193
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----DIGHIP 102
+ P+V +Y++++ GFC G+ E L NE +++GV PN+V L +++ IG +
Sbjct: 194 MIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLS 253
Query: 103 RT----------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I++ +I C + K+++A+ L M + GK P+ Y TL+
Sbjct: 254 SARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLL 313
Query: 147 KKLDQ 151
L Q
Sbjct: 314 TGLLQ 318
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA E+ +K+ K D +Y+ ++DG CK G+ E + + G+ PNVVT
Sbjct: 357 LFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTC-- 414
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL---LFLMYEHGKIPSRTLYDTLIK 147
N +I C V ++DKA +L + M E+G P Y+TL++
Sbjct: 415 ----------------NIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLR 457
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKP 49
C D +A D M + P ++++ L Y L ++ N GL P
Sbjct: 64 CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNVIDIGH----- 100
D++T + + C + R +E + + + RG P++VT + L+ + +GH
Sbjct: 124 DLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAK 183
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IP I++++++ C GK++++ L M + G P+ ++ LI L
Sbjct: 184 EIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDIL 243
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 22 GYHPNVTTYTILE--------------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
G PNV T I+ +E + ++ +G PD+ TY ++ GFC+ +
Sbjct: 406 GLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKL 465
Query: 68 NEVMELLNEAIER 80
EV+ LL++ +R
Sbjct: 466 EEVVNLLHKMFKR 478
>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
Length = 838
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C EA + +D M + G+ P++ TY+ I A + +++ + PDV
Sbjct: 553 CLSGRITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISSKCYLPDV 612
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+ +++GF K G+ +E E++ E + +G+ P+VVT + ++
Sbjct: 613 VAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYK 672
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ID P +T+ +++ LC G+ D+A++L M E G P+ Y L+ L
Sbjct: 673 MIDEEKPPTVVTYTSLLDGLCNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGL 727
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT------------------------------- 31
CN EA ++ + M D G P+ TY
Sbjct: 483 CNSGKLDEAYEIFNQMKDLGLKPSEFTYNSLLYGICRRKDTSAAADLLREMRANAHKPWI 542
Query: 32 ---------------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
I EA + L + G PD+ TY+A M+G CKVG + L +
Sbjct: 543 KNCTDMVQQLCLSGRITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLD 602
Query: 77 AIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
+ P+VV LI+ + ++ G +P +T+N +I C G
Sbjct: 603 ISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIWCKSGS 662
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IDKA+ ++ M + K P+ Y +L+ L
Sbjct: 663 IDKAITCVYKMIDEEKPPTVVTYTSLLDGL 692
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A + M D P V TYT L EA + ++ G P+
Sbjct: 657 WCKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDEAIVLWCKMREKGCSPN 716
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
YTA+++G CK GR + E +G ++ +L++L N++
Sbjct: 717 GIAYTALVNGLCKCGRMETAVNYYEEMKTKGFDLDIFSLLNLTNLL 762
Score = 38.5 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
V + +KP+ ++ V+ G CKV + + + L + ++ +G
Sbjct: 428 VITEDVKPNSDSFNIVVCGLCKVKKLDLALALTKD------------------MVGLGCK 469
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + FN++I LC GK+D+A + M + G PS Y++L+
Sbjct: 470 GKLLMFNDLILELCNSGKLDEAYEIFNQMKDLGLKPSEFTYNSLL 514
Score = 35.4 bits (80), Expect = 8.5, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY---------EMLMNVKNDGLKPD-- 50
C+ N+ +A K+ + M + P+V I+EA+ +N LKP
Sbjct: 323 CHGNEMGKAVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFINENAVHLKPGSA 382
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI--ERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
V Y ++DG G +LL+ + ++ V+ + +H+ VI P + +FN
Sbjct: 383 VLLYNVILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHIF-VITEDVKPNSDSFN 441
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+ LC V K+D AL L M G +++ LI +L
Sbjct: 442 IVVCGLCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILEL 482
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 28/156 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV ++ ++ A E+ + +PDV+TY +MDG CK R +E + L
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245
Query: 74 LNEAIERGVTPNVVT-------------LIHLHNVID----IGHIPRTITFNNVIQALCG 116
L+E G P+ VT ++ + ++D G +P +T+N +I LC
Sbjct: 246 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCL 305
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
GK+DKA+ LL M +P+ Y TLI L +Q
Sbjct: 306 KGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQ 341
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
+ G+H N Y+ L EA + + G +P++ Y+A++DG C+ G+ +
Sbjct: 356 ERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLD 415
Query: 69 EVMELLNEAIERGVTPNVVTLIHL-HNVIDIGH----------------IPRTITFNNVI 111
E E+L E + +G TPN T L G+ +P I ++ +I
Sbjct: 416 EAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLI 475
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK+ +A+++ M G P Y ++I L
Sbjct: 476 HGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 513
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D K++D MF G PN TY + +A +L + P+
Sbjct: 269 CKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPND 328
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LHN 94
TY +++G K GRS + + LL+ ERG N TLI
Sbjct: 329 VTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKK 388
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G P + ++ +I LC GK+D+A +L M G P+ Y +LIK
Sbjct: 389 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIK 441
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA++++ M + G PN TY+ L +A + + + P+
Sbjct: 409 CREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNE 468
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
Y+ ++ G C+ G+ E M + + RG+ P+VV + H + + G +
Sbjct: 469 ICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNE 528
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+N +++ALC I A+ LL M + G P + + L ++
Sbjct: 529 MLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREK 588
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE YE + K + + P+V ++ V+ CK+G + +E+ E + P+V T L
Sbjct: 171 LEFYECGVGGKTN-ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTL 229
Query: 93 ------HNVID-----------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ ID G P ++TFN +I LC G + + L+ M+ G
Sbjct: 230 MDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGC 289
Query: 136 IPSRTLYDTLIKKL 149
+P+ Y+T+I L
Sbjct: 290 VPNEVTYNTIINGL 303
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TY L EA +L ++ +G P T+ +++G CK G V +L
Sbjct: 221 PDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKL 280
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
++ +G PN VT +I+ L ++ +P +T+ +I L
Sbjct: 281 VDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVK 340
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ + LL + E G + Y TLI L
Sbjct: 341 QGRSVDGVHLLSSLEERGHHANEYAYSTLISGL 373
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 212 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A+ ++ + GLKPD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPD 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + E I+ + + V LI L
Sbjct: 317 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLR 376
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 377 EMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLM 429
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 159 RJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254
>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C KND A KV D M G PN+ TYT ++ A ++ + + G PD
Sbjct: 169 CKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDA 228
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYT +M G+CK GR ++ +++++ GV PN VT +I + +
Sbjct: 229 TTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDD 288
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++D +P + VI LC GK++ A L M E +P + TLI L ++
Sbjct: 289 MLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKE 346
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 29/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ ++ D A KV + D G+ P+ TTYT+L +A +++ N++ +G++P+
Sbjct: 203 FVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPN 262
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN----------------VVTLIHL-H 93
TY ++D +CK +S E L+++ +++ P+ V HL
Sbjct: 263 EVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWK 322
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ +P + +I LC GK+ +A LF +E G IPS Y+TLI
Sbjct: 323 RMLEKNCLPDNAIMSTLIHWLCKEGKVWEA-RKLFDEFEQGTIPSLMTYNTLI 374
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +EARK+ D F+ G P++ TY L EA + ++ +P+
Sbjct: 344 CKEGKVWEARKLFDE-FEQGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNA 402
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+TY ++ GF K G E + +L E ++ G PN T
Sbjct: 403 FTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKST 439
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 39 LMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------- 88
L N K+ G+ P+V+++ ++ CK +++ +E G+ PN+VT
Sbjct: 145 LKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFV 204
Query: 89 ----LIHLHNVI----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
L++ V D G +P T+ ++ C G++ A+ ++ M +G P+
Sbjct: 205 SRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEV 264
Query: 141 LYDTLI 146
Y +I
Sbjct: 265 TYGVMI 270
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K EA M D G + TYT+L +A E+ ++ G+ PD
Sbjct: 567 YCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
V++Y +++GF K+G + + +E +E G+TPNV+ + L G I
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I C G + +A L M G +P +Y TL+
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A ++ M +G PNV YT L +A +L +K G+ PD+
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI 487
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ Y +++ G K R +E L E +E G+ PN T
Sbjct: 488 FCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 31/181 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A++++D M G HPN TY + EA+ + +K GL PD
Sbjct: 672 FCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
Query: 51 VYTYTAVMDGFCKVGRSNEVM------------------ELLNEAIERGVTPNVVTLIH- 91
+ YT ++DG C++ + L+N + G T +++
Sbjct: 732 SFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNR 791
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D P +T+N +I LC G ++ A L M +P+ Y +L+ D
Sbjct: 792 LMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD 851
Query: 151 Q 151
+
Sbjct: 852 K 852
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D FD PN TY I+ Y E+ ++N L P V TYT++++G+
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K+GR E+ + +EAI G+ P+ I ++ +I A G
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPD------------------HIMYSVIINAFLKEGMTT 892
Query: 122 KALLLLFLMY 131
KAL+L+ M+
Sbjct: 893 KALVLVDQMF 902
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C +K E A+ + D M +G P Y L + YE+L+ +K +
Sbjct: 355 CVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV 414
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------- 91
YTY V+ G C G + ++ E I G PNVV TLI
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + + G P +N++I L ++D+A L M E+G P+ Y I
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL P Y ++++G+C+ + ELL E +R + +
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNI------------------VISPY 418
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T+ V++ +C G +D A ++ M G P+ +Y TLIK Q
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
D +F T + A ++ ++ GL P YTY ++DG CK+ R + LL
Sbjct: 242 DVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLV 301
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
E GV+ + T L H ++ G + ++ I + G
Sbjct: 302 EMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEG 361
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA L M G IP Y +LI+
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIE 390
>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Cucumis
sativus]
Length = 830
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
Y + EA ++ M + G P+V T+ ++EA +ML ++ GL P
Sbjct: 526 YVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPS 585
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNVIDI-- 98
V TYT +M+ +C+VG E+ L+E V P VT +H + +
Sbjct: 586 VVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLE 645
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P ++T+N +IQ C +I KAL L +M H P++ Y LI L
Sbjct: 646 YMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINAL 701
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
F R V+ +F NG I EA L DV Y ++DG+ ++
Sbjct: 482 FAQRAVLLGLFKNG--------NISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIA 533
Query: 69 EVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI----GHIPRTITFNNVI 111
E M+L + IERG+TP+VVT L+ ++++ G +P +T+ ++
Sbjct: 534 EAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLM 593
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
A C VG + + L M + +P+ Y LIK L +Q
Sbjct: 594 NAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQ 634
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKN-----------DGLKPDV 51
C EA D M +G P+V TY L +L+ + + GL PD+
Sbjct: 317 CVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDL 376
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C++G E ++L E + RG NV I +N ++
Sbjct: 377 VTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNV------------------IFYNMLL 418
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC VG+I++AL L M P +Y LI L ++
Sbjct: 419 SCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKE 459
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 76/211 (36%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C + D EARK+++ + G P+V TYT L
Sbjct: 561 FCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPT 620
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
E+ ++L + GL PD TY ++ FCK + ++L N
Sbjct: 621 HVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYN 680
Query: 76 EAIERGVTPNVVTLIHLHNVI----DIGHIPRTI-------------TFNNVIQALCGVG 118
+ P VT L N + D+ + R + T+ +I+A C G
Sbjct: 681 MMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKG 740
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ KAL M G + S Y +I +L
Sbjct: 741 QVSKALGYFNQMLAKGFVISIRDYSAVINRL 771
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + +A ++ + M + P TY +L + M++++++ +
Sbjct: 665 CFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITL 724
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY ++ C G+ ++ + N+ + +G VI I ++
Sbjct: 725 KKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGF------------VISIR------DYSA 766
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
VI LC G I +A +M G P + T++ QQ
Sbjct: 767 VINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQ 809
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 36/168 (21%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVY-------------TYTA 56
+A VI M D + +V TY +L N+++ + DVY T +
Sbjct: 188 DALFVIAKMKDLNFQASVPTYN-----SLLHNMRHTDIMWDVYNEIKVSGAPQSECTTSI 242
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDI-----------G 99
++ G C+ + + + L+++ + V P++V++ + + +ID+ G
Sbjct: 243 LIHGLCEQSKLEDAISFLHDS-NKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNG 301
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ + ++N ++ LC G +D+AL M +HG P Y+TL K
Sbjct: 302 LLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAK 349
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---------LIHL 92
VKN GL D ++Y ++ G C G +E + ++ + GV P+VVT L+ L
Sbjct: 298 VKN-GLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGL 356
Query: 93 --------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
++ G P +T+ +I C +G I++AL L
Sbjct: 357 MSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKL 398
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA K+ G+ NV Y +L EA + ++ L+PD
Sbjct: 386 HCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPD 445
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEA-IERGVTPNVVTLIHLHNVIDIGHIPRT----- 104
Y+ ++ G CK G +L + ++R + L + G+I
Sbjct: 446 FIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFD 505
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +N +I + I +A+ L + M E G PS ++TLI
Sbjct: 506 TWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLI 558
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ N+ DF A + + G+ P+ TT+T L EA + + +G +P
Sbjct: 91 CHLNRVDF--AFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQP 148
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
+V TY +++G CK + E + +E I +G++PN+VT LIH +
Sbjct: 149 NVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLM 208
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++D +P T N V+ ALC G + +A ++ +M G P+ Y+ L+
Sbjct: 209 NEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 262
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY--EMLMNVKND--------GLKPDV 51
CN ++ +++ M ++ PNV + T+++A E ++ + +D G++PDV
Sbjct: 684 CNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDV 743
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYTA+MDG C +E +++ + + +G PNV + LI+ L
Sbjct: 744 VTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ 803
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G I T+T+N +I LC VG++ A+ L M G+IP Y L+ L
Sbjct: 804 MSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDG-LKPDV 51
C EA + M G PN+ TY L + LMN D + PDV
Sbjct: 161 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 220
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR-------- 103
+T V+D CK G E ++++ I RGV PNVVT +N + GH R
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVT----YNALMDGHCLRNEVDVAVK 276
Query: 104 -------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I++N +I C + +DKA+ L M P+ Y+TLI L
Sbjct: 277 VFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 335
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK-----------PDV 51
C + EA V+D M G PNV TY L L N + +K +V
Sbjct: 231 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y +++G+CK+ ++ M L E + +TPN T+T+N +I
Sbjct: 291 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPN------------------TVTYNTLI 332
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTLIK 147
LC VG++ A+ L M G+IP RTL D L K
Sbjct: 333 HGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 372
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+C+ A V+ + G+ P+V TY L L + G+ PD++TY +++
Sbjct: 626 FCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTL--MNGLCKMITKGISPDIFTYNSLIHAL 683
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI----GHIPRT 104
C + V LLNE + + PNVV + H+V+D+ G P
Sbjct: 684 CNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDV 743
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+ ++ C ++D+A+ + M G +P+ Y+ LI
Sbjct: 744 VTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILI 785
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C+ +A + M G P++ TY L Y +L ++ PD+
Sbjct: 336 CHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDI 395
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT ++DG C+ G + +L + +G+ PNV T+N +I
Sbjct: 396 QIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV------------------WTYNIMI 437
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G + +A L M ++G P+ Y+ + +
Sbjct: 438 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITR 473
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----VIDIGHI 101
G+ PDVYT +++ FC + R +L + ++ G P+VVT L N +I G
Sbjct: 611 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGIS 670
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T+N++I ALC + + LL M +P+ ++ T++ L ++
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKE 721
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 20/109 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ PDVYT V++ C + R + L + ++ +GH P
Sbjct: 75 GIPPDVYTLAIVINSLCHLNRVDFAFSALAK------------------ILKLGHQPDAT 116
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL--DQQ 152
TF +I+ LC GKI +AL L M G P+ Y TLI L D+Q
Sbjct: 117 TFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQ 165
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR + + G PNV TY I+ EA ++ + +G P+
Sbjct: 406 CRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 465
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + GF + + +ELL E + RG + +V T
Sbjct: 466 CTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 502
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 29/132 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A + M +G P++ TY IL EA +L ++ L D+
Sbjct: 824 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADI 883
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +DG C+ G +L + +G+ P+V T+N +I
Sbjct: 884 LVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVR------------------TYNIMI 925
Query: 112 QALCGVGKIDKA 123
LC G +D+A
Sbjct: 926 HGLCKRGLLDEA 937
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
A ++ N+ + GL+PDV TY ++ G CK G +E +L + E + N +
Sbjct: 902 ARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTS 955
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K EA M D G + TYT+L +A E+ ++ G+ PD
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
V++Y +++GF K+G + + +E +E G+TPNV+ + L G I
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I C G + +A L M G +P +Y TL+
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A ++ M +G PNV YT L +A +L +K G+ PD+
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI 487
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
+ Y +++ G K R +E L E +E G+ PN T ++
Sbjct: 488 FCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE 547
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G +P + +I C GK+ +A M + G + Y L+ L
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 31/181 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A++++D M G HPN TY + EA+ + +K GL PD
Sbjct: 672 FCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
Query: 51 VYTYTAVMDGFCKVGRSNEVM------------------ELLNEAIERGVTPNVVTLIH- 91
+ YT ++DG C++ + L+N + G T +++
Sbjct: 732 SFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNR 791
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D P +T+N +I LC G ++ A L M +P+ Y +L+ D
Sbjct: 792 LMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD 851
Query: 151 Q 151
+
Sbjct: 852 K 852
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D FD PN TY I+ Y E+ ++N L P V TYT++++G+
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K+GR E+ + +EAI G+ P+ I ++ +I A G
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPD------------------HIMYSVIINAFLKEGMTT 892
Query: 122 KALLLLFLMY 131
KAL+L+ M+
Sbjct: 893 KALVLVDQMF 902
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C +K E A+ + D M +G P Y L + YE+L+ +K +
Sbjct: 355 CVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV 414
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------- 91
YTY V+ G C G + ++ E I G PNVV TLI
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + + G P +N++I L ++D+A L M E+G P+ Y I
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL P Y ++++G+C+ + ELL E +R + +
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNI------------------VISPY 418
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T+ V++ +C G +D A ++ M G P+ +Y TLIK Q
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
D +F T + A ++ ++ GL P YTY ++DG CK+ R + LL
Sbjct: 242 DVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLV 301
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
E GV+ + T L H ++ G + ++ I + G
Sbjct: 302 EMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEG 361
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA L M G IP Y +LI+
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIE 390
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 20/133 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
E YEM+ + G PDV+TY+ +M G CK+GR + +L+E E+G PN+V TL+
Sbjct: 334 ELYEMM---GSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLL 390
Query: 91 H--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H L ++ G + +N +I ALC GK+D+A L+ M G
Sbjct: 391 HSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCK 450
Query: 137 PSRTLYDTLIKKL 149
P Y+T+I L
Sbjct: 451 PDICTYNTMIYHL 463
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + +AR ++D M G+ N Y + +A ++ +K+ G KPD
Sbjct: 393 FCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPD 452
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--LHN----------- 94
+ TY ++ C E + IE GV N + TLIH L N
Sbjct: 453 ICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLAS 512
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G I++N +I+ALC G +D+++ LL M G P+ Y+ LI +L
Sbjct: 513 EMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINEL 568
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + +++ M G PN +Y +L +A E+ + N GL PD+
Sbjct: 534 CKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDI 593
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++G CKVG ++ + LL + V P++V T+N +I
Sbjct: 594 VTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIV------------------TYNILI 635
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C V +D A +LL G +P+ + +++ +Q
Sbjct: 636 SWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVRQ 676
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F A +++D M + G PN+ TY+ L +A ML + G +
Sbjct: 359 CKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNS 418
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL-------------HN 94
Y ++ CK G+ ++ L+ E +G P++ T + HL N
Sbjct: 419 QGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRN 478
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G + IT+N +I AL G+ + L L M HG Y+ LIK L
Sbjct: 479 LIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKAL 533
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---------- 91
D + P +T+ C++GR+ + + LL G P+ V T+IH
Sbjct: 171 DRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAE 230
Query: 92 ----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L ++ +G TFN+++ LCG+G++ +A L+ M G +PS Y L++
Sbjct: 231 AAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQ 290
Query: 148 KL 149
L
Sbjct: 291 GL 292
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T TF +ALC +G+ AL LL M HG +P LY T+I L Q
Sbjct: 175 PTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQ 225
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 13/145 (8%)
Query: 18 MFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
++ H V + EA +L + G DV T+ ++ G C +GR E L++
Sbjct: 214 LYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRM 273
Query: 78 IERGVTPNVVTLIHL-----------HNVIDIGHIPR--TITFNNVIQALCGVGKIDKAL 124
+ +G P+VVT L +G +P + N VI+ GK+ +A
Sbjct: 274 MTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARAT 333
Query: 125 LLLFLMYEHGKIPSRTLYDTLIKKL 149
L +M G P Y L+ L
Sbjct: 334 ELYEMMGSKGCPPDVHTYSILMHGL 358
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 80/210 (38%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A+ V +M D G PN TYT L E +ML + GL+PD
Sbjct: 213 CKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDC 272
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------------TLIHLHNVIDI 98
Y Y ++D CK GR E + + I +G+ PNV +L +H+ +D+
Sbjct: 273 YIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDL 332
Query: 99 ---------GHI------------------------------PRTITFNNVIQALCGVGK 119
HI P +T+ +I ALC +G+
Sbjct: 333 MVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGR 392
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D A+L M + G P ++ +L+ L
Sbjct: 393 VDDAVLKFNQMIDEGMTPDIFVFSSLVYGL 422
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 28/150 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+++ID M G P+V +Y L EA ++L + + GLKPD
Sbjct: 458 CREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDK 517
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
TY ++ G+CK R ++ L E + +G+TP+VVT LH + G
Sbjct: 518 VTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLS 577
Query: 105 ----------ITFNNVIQALCGVGKIDKAL 124
T+N +I LC +D+A
Sbjct: 578 MINSRTQMNIYTYNIIINGLCKNNFVDEAF 607
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + E +D M NG P+ + I+ EA + ++ L P+
Sbjct: 317 YATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPN 376
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY A++D CK+GR ++ + N+ I+ G+TP++ L
Sbjct: 377 IVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFF 436
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+D G T+ FN ++ LC G++ +A L+ LM G P Y+TL+
Sbjct: 437 EVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLV 489
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA + D M PN+ TY L +A + ++G+ PD
Sbjct: 352 YAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPD 411
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------------TLIHLHNVID 97
++ +++++ G C V + + EL E +++G+ + V ++ +ID
Sbjct: 412 IFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLID 471
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+G P I++N ++ C G+ID+A LL ++ G P + Y+TL+
Sbjct: 472 LMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLL 524
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 28/162 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G P++ ++ L +A E+ V + G++ D + +M C+ GR
Sbjct: 403 MIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGR 462
Query: 67 SNEVMELLNEAIERGVTPNVV---TLIHLHN--------------VIDIGHIPRTITFNN 109
E L++ + GV P+V+ TL+ H ++ IG P +T+N
Sbjct: 463 VMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNT 522
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ C +ID A L M G P Y+T++ L Q
Sbjct: 523 LLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQ 564
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G PDV++Y+ ++ GFC R+ E +ELL+ + G D H P +
Sbjct: 159 GCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDG---------------DGSHTPNVV 203
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+ VI LC +D+A + M + G P+ Y LI
Sbjct: 204 TYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLI 244
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPD 50
YC +A + M G P+V TY TIL EA E+ +++ N + +
Sbjct: 527 YCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMN 586
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-----TPNVVTLIHL-----HNVIDI-- 98
+YTY +++G CK +E ++ + + + T N++ L + +D+
Sbjct: 587 IYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFA 646
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P T+ + + L G +++ L M E+G P+ + + L++ L
Sbjct: 647 TISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWL 702
>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + +A+++++ MF G P+V TYT + +A +ML + G KP+
Sbjct: 355 FCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPN 414
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+YTA+++G CK G S E E++N + E PN +T L+H +
Sbjct: 415 TVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVR 474
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+I G P + N +IQ+LC K+D+A
Sbjct: 475 EMIKKGFFPTPVEINLLIQSLCQEEKVDEA 504
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E R +++ M D+ P+ TY EA E L + + D
Sbjct: 285 CKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVD 344
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+A++ FC+ GR ++ E++NE +G P+VV T+ +V
Sbjct: 345 KVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVV------------------TYTSV 386
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC K+D+A +L MY+HG P+ Y L+ L
Sbjct: 387 INGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGL 425
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 63/209 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+K++ M+ +G PN +YT L EA EM+ + D P+
Sbjct: 391 CQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNA 450
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP--------------------------- 84
TY+ +M GF + G+S+E +L+ E I++G P
Sbjct: 451 ITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQ 510
Query: 85 -----------NVVTLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
N T+IH L ++ P +T+ +I AL G+
Sbjct: 511 CLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGR 570
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
I++A L M G IP+ Y T+I +
Sbjct: 571 IEEATKLAMKMLRVGLIPTPVTYRTVIHQ 599
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 31/137 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C K+D A ++D M+ + HP+V TYT I EA ++ M + GL P
Sbjct: 530 FCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPT 589
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY V+ +C++GR ++++LL + + R RT +N V
Sbjct: 590 PVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQEC-------------------RT-AYNQV 629
Query: 111 IQALCGVGKIDKALLLL 127
I+ LC G +++A LL
Sbjct: 630 IEKLCSFGNLEQAYKLL 646
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY L +A E++ + G PD +Y VM CK R EV L
Sbjct: 237 PNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLL 296
Query: 74 LNEAI-ERGVTPNVVTL-IHLHNVIDIGHIPRTITF----------------NNVIQALC 115
+ + + + + P+ VT +H + GH + F + ++ + C
Sbjct: 297 MEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFC 356
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G++DKA ++ M+ G IP Y ++I L Q+
Sbjct: 357 REGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQE 393
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
++P+V TY ++ G+C + R + MEL+ E +G +P+ I+
Sbjct: 235 IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPD------------------KIS 276
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLIKKLDQQ 152
+ V+ LC +I + LL+ M + +P + Y+T + L +
Sbjct: 277 YYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 323
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++D M DNG N+ TY L +A ++ +K+ G++PD+
Sbjct: 394 CKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDM 453
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+ ++ G CKVGR ++ + + +G + N T+N ++
Sbjct: 454 YTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVN------------------AWTYNIMV 495
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G D+A LL M ++G IP Y+TLI+ L
Sbjct: 496 NGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQAL 533
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA + M +P+ T+ IL A ML+ + +G+ P+
Sbjct: 253 FCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPN 312
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLHNVIDI--------- 98
V TY+++MDG+C V + N+ +LN + G PN T+I+ I +
Sbjct: 313 VVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFN 372
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+N++I LC G+I A L+ M+++G+ + Y+ LI L
Sbjct: 373 DMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDAL 428
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+++AYE+ + + PDV T++A++ GFC VG+ E L E + + + P+
Sbjct: 224 VIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYY---- 279
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN ++ ALC G + A +L +M + G +P+ Y +L+
Sbjct: 280 --------------TFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLM 320
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC+ + A ++ + GY P+ T+ L EA +V G
Sbjct: 112 CYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHL 171
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHNVIDIGHI- 101
D ++Y +++G CK+G + +++L + + V NVV +L VID +
Sbjct: 172 DQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELY 231
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+ +I C VG++++A L M P ++ L+ L ++
Sbjct: 232 SQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKE 291
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ PD++T+ +++ +C + N ++ + ++ +G+ P TI
Sbjct: 98 GITPDIFTFNILINCYCHMAEMNFAFSMMAK------------------ILKMGYEPDTI 139
Query: 106 TFNNVIQALCGVGKIDKAL 124
TFN +I+ LC GK+ +AL
Sbjct: 140 TFNTLIKGLCLNGKVKEAL 158
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 31/119 (26%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G P++ T+ IL A+ M+ + G +PD T+ ++ G C G+ E
Sbjct: 97 HGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKE 156
Query: 70 VMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ H H+ V+ +G ++ +I LC +G+ AL +L
Sbjct: 157 AL-------------------HFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQML 196
>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 27/173 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY------EMLMNVKNDGLK----PD 50
YC K F +A KV+D M +N PN TY I+EAY ++N+ +D L+ P
Sbjct: 321 YCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPS 380
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH-------------LHN 94
V+D C+ G+ EL + +++ TP+ TLIH L +
Sbjct: 381 SALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFD 440
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G IP T+T+N +I +C G++ +A L M E G +P+ Y+ LIK
Sbjct: 441 EFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIK 493
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C KND A +V++ M G+ PNV TYT ++ A + + + G PD
Sbjct: 252 CKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDP 311
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TYT +MDG+CK GR + +++++E E V PN VT L L +
Sbjct: 312 TTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDD 371
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ +IP + VI LC GK++ A L + + P + TLI L ++
Sbjct: 372 MLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKE 429
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +EARK+ D F+ G P+ TY L EA + N+ G P+
Sbjct: 427 CKEGKVWEARKLFDE-FEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNA 485
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+TY ++ GFCKVG + E + ++ E ++ G PN T
Sbjct: 486 FTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKAT 522
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------- 92
K G+ P+V+T ++ CK + + +L E G PNVVT +
Sbjct: 233 KKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDM 292
Query: 93 -------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++D G +P T+ ++ C G+ A+ ++ M E+ P+ Y +
Sbjct: 293 VGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVI 352
Query: 146 IK 147
I+
Sbjct: 353 IE 354
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C EA + M + ++PNV Y+ + EA + + + G+KP++
Sbjct: 192 CKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNL 251
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV---------------- 95
TYT ++ G C GR E LL+E ++ GV P++ +L L +V
Sbjct: 252 VTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGF 311
Query: 96 -IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +G +P T+N++I C ++D+A + LM G +P Y +LI
Sbjct: 312 MILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLI 363
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 28/174 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D A +++D++ GY +V TY +L EA L ++ P+V
Sbjct: 157 CVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNV 216
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y+ VMDG CK G +E + L E +G+ PN+VT LI L
Sbjct: 217 VVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDE 276
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +G +P + N ++ LC GKI +A ++ M G++P Y++LI +
Sbjct: 277 MMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDR 330
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+ VI +M G P+V TY L EA + + + G PD+
Sbjct: 297 CKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDI 356
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+++ G+CK+ N+ M LL+E I+ G TP+VV T+ +I
Sbjct: 357 VAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVV------------------TWTTLI 398
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C VG+ A L M+++G++P+
Sbjct: 399 GGFCQVGRPLAAKELFLNMHKYGQVPN 425
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
V+ M G P+V T+TIL A E++ +V+ G + DV TY +++G
Sbjct: 132 SVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGL 191
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
CK+G+++E + L + ER PNVV ++ V+ LC G +
Sbjct: 192 CKMGKTSEAVGWLRKMEERNWNPNVV------------------VYSTVMDGLCKDGLVS 233
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+AL L M G P+ Y LI+ L
Sbjct: 234 EALGLCLEMSGKGIKPNLVTYTCLIQGL 261
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +N EA +V + M G P++ YT L +A +L + G PD
Sbjct: 331 YCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPD 390
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHN 94
V T+T ++ GFC+VGR EL + G PN+ T + L +
Sbjct: 391 VVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFH 450
Query: 95 VIDIGHIPRTITFNNVI-QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ ++ I ++I +C GK++ AL L + G + Y +I +Q
Sbjct: 451 AMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQ 509
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 20/155 (12%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVM 71
VID+ G+ + YT A ++ + + G+KPD + V++ C +
Sbjct: 74 SVIDFTLLLGFIVKMKHYT--TAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGF 131
Query: 72 ELLNEAIERGVTPNVVTLIHLHNVI----DIG-------HIPRT------ITFNNVIQAL 114
+L ++ G+ P+VVT L N + D+G H+ +T T+ +I L
Sbjct: 132 SVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGL 191
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C +GK +A+ L M E P+ +Y T++ L
Sbjct: 192 CKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGL 226
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M + N+ Y+I+ A E+ + GL+ +V
Sbjct: 437 CKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINV 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITF 107
Y YT +++GF K G ++ +LL+ E G P+ T + + ++ I R+I +
Sbjct: 497 YAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKY 553
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V+D M ++G N T I+ +A+E L N+ + G PD
Sbjct: 287 FCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPD 346
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YT V+ G C+ GR + ELLNE + + PN +TFN
Sbjct: 347 TISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPN------------------EVTFNTF 388
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G ID+A+LL+ M E+G Y+ L+
Sbjct: 389 ICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALV 424
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F +A KV+D M G PN+ TY ++ +A ++L + + G +PD
Sbjct: 183 CKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDT 242
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YT V+ G C R +V L E +E PN +TF+ ++
Sbjct: 243 VSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPN------------------EVTFDMLV 284
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ C G +++A+ +L M EHG + TL + +I + +Q
Sbjct: 285 RFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQ 325
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A +++ M N NV T+ +L EA E++ + G P++
Sbjct: 460 CHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNL 519
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
T+ ++DG + S E +ELL+ + +G++ + +T + H
Sbjct: 520 ITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHA 579
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V D+G P+ + +N ++ ALC + D+A+ M + +P+ + Y LI+ L ++
Sbjct: 580 VQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLARE 637
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC AR++I M P+ TYT L +A +L ++ +P
Sbjct: 115 YCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPS 171
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TYT +++ CK + M++L+E +G TPN+VT +I+ L+
Sbjct: 172 VVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILN 231
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P T+++ V++ LC + + +L M E+ +P+ +D L++
Sbjct: 232 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVR 285
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNV 95
PD YTYT ++ G C GR + + LL++ + R P+VVT L V
Sbjct: 135 PDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKV 194
Query: 96 ID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D G P +T+N +I +C ++D A +L + +G P Y T++K L
Sbjct: 195 LDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGL 252
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 32/160 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A +I+ M + G + TY L A E+ ++ +P+
Sbjct: 393 CQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLP---CEPNT 449
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++ G C R + ELL E ++ NVV TFN ++
Sbjct: 450 ITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVV------------------TFNVLV 491
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C G +++A+ L+ M EHG P+ ++TL+ + +
Sbjct: 492 SFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITE 531
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 22/136 (16%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA ++ + G PDVY T ++ C+ GR+++ +L A G +V
Sbjct: 51 LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFA--- 107
Query: 92 LHNVIDIGHI------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+N + G+ P T+ +I+ LC G++ AL LL M
Sbjct: 108 -YNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRR 166
Query: 134 GKIPSRTLYDTLIKKL 149
PS Y L++ +
Sbjct: 167 ECQPSVVTYTVLLEAV 182
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K EA M D G + TYT+L +A E+ ++ G+ PD
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
V++Y +++GF K+G + + +E +E G+TPNV+ + L G I
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I C G + +A L M G +P +Y TL+
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A ++ M +G PNV YT L +A +L +K G+ PD+
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI 487
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
+ Y +++ G K R +E L E +E G+ PN T ++
Sbjct: 488 FCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE 547
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G +P + +I C GK+ +A M + G + Y L+ L
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 31/181 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A++++D M G HPN TY + EA+ + +K GL PD
Sbjct: 672 FCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
Query: 51 VYTYTAVMDGFCKVGRSNEVM------------------ELLNEAIERGVTPNVVTLIH- 91
+ YT ++DG C++ + L+N + G T +++
Sbjct: 732 SFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNR 791
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D P +T+N +I LC G ++ A L M +P+ Y +L+ D
Sbjct: 792 LMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD 851
Query: 151 Q 151
+
Sbjct: 852 K 852
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D FD PN TY I+ Y E+ ++N L P V TYT++++G+
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K+GR E+ + +EAI G+ P+ I ++ +I A G
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPD------------------HIMYSVIINAFLKEGMTT 892
Query: 122 KALLLLFLMY 131
KAL+L+ M+
Sbjct: 893 KALVLVDQMF 902
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C +K E A+ + D M +G P Y L + YE+L+ +K +
Sbjct: 355 CVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV 414
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------- 91
YTY V+ G C G + ++ E I G PNVV TLI
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + + G P +N++I L ++D+A L M E+G P+ Y I
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL P Y ++++G+C+ + ELL E +R + +
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNI------------------VISPY 418
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T+ V++ +C G +D A ++ M G P+ +Y TLIK Q
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
D +F T + A ++ ++ GL P YTY ++DG CK+ R + LL
Sbjct: 242 DVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLV 301
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
E GV+ + T L H ++ G + ++ I + G
Sbjct: 302 EMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEG 361
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA L M G IP Y +LI+
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIE 390
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++D M +P V Y IL EA +L + +G+KP
Sbjct: 195 FCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPG 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY+ +MDG+C VG ++ + ++ GV PNV + +I+ L
Sbjct: 255 VVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLR 314
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +P T+T+N++I LC G+I AL L+ M+ G+ Y +L+ L
Sbjct: 315 EMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDAL 370
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++ M G +V TYT L +A + M +K G++P +
Sbjct: 336 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTM 395
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYTA++DG CK GR EL + +G +V T+ +I
Sbjct: 396 YTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDV------------------WTYTVMI 437
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G D+AL + M ++G IP+ ++ +I+ L
Sbjct: 438 SGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSL 475
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K++ + D PNV Y + EAY++ + G+ PD TYT ++
Sbjct: 134 AVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIY 193
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GFC +G+ LL+E I + + P V +N +I ALC G
Sbjct: 194 GFCLLGQLMGAFSLLDEMILKNINPGVY------------------IYNILINALCKEGN 235
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +A LL +M + G P Y TL+
Sbjct: 236 VKEAKNLLAVMTKEGIKPGVVTYSTLM 262
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAYEMLMNVKND----------GLKP 49
C+C+ + V+ + GY P+ +T T+++ + VK G +
Sbjct: 54 CFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQM 113
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------------HLH 93
D +Y +++G CK+G + ++LL +R PNVV T+I L+
Sbjct: 114 DHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLY 173
Query: 94 NVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ +D G P IT+ +I C +G++ A LL M P +Y+ LI L ++
Sbjct: 174 SEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKE 233
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--- 89
L A + ++ G++ + T +++ FC +G+ +L + ++ G P+ +TL
Sbjct: 27 LTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTL 86
Query: 90 -------------IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+H H+ V+ G +++ ++ LC +G+ A+ LL ++ +
Sbjct: 87 MKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRST 146
Query: 136 IPSRTLYDTLIKKL 149
P+ +Y+T+I L
Sbjct: 147 RPNVVMYNTIIDGL 160
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+ ++ M NG+ NV+T+ + +A L NV + PDV +Y V+
Sbjct: 315 EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI 374
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+GFCK+G+S+E + LL E RG+ P V +FN V + L G
Sbjct: 375 NGFCKIGKSDEAISLLKEMRARGLKPTV------------------FSFNAVFRILVENG 416
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+A+LLL M + +P+ Y+T+I
Sbjct: 417 ELDRAILLLKQMPQMDCLPNFVSYNTII 444
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K + EA+K ++ M + G PN TY + EA ++ ++ +G K +
Sbjct: 272 YCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN 331
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ +++ G C VG+ ++ + L +E + P+V + + V
Sbjct: 332 VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKS------------------YEVV 373
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C +GK D+A+ LL M G P+ ++ + + L
Sbjct: 374 INGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRIL 412
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 33/160 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN--VKNDGLKP 49
YC A+KV D M PN+ Y + E+ ++ + + + P
Sbjct: 204 YCKMGMIENAKKVFDVM---TVKPNLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLP 260
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ TYT ++DG+CK G E + +NE + RG PN +T+N
Sbjct: 261 NHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPN------------------ELTYNA 302
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC G++D+A +L+ M +G + + + +++K L
Sbjct: 303 MIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 342
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
VK + + PDV TYT ++ G+CK+G IE V D+ +
Sbjct: 185 VKENVVPPDVSTYTTMIRGYCKMG-----------MIENA-----------KKVFDVMTV 222
Query: 102 -PRTITFNNVIQALCGVGKIDKALLLL-FLMYEHGKIPSRTLYDTLI 146
P + +N +I C G ++ A L+ +M +P+ Y TLI
Sbjct: 223 KPNLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLI 269
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C K DF +++ M G NV Y I++A E + + G KPD
Sbjct: 265 FCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPD 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+ TY ++ G C+ G+ +E +LL +A+ +G+ PN + LIH L
Sbjct: 325 IVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLI 384
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + GH P +T+ ++ L G++D AL + M E G P +Y+ L+ L
Sbjct: 385 EMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGL 440
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + E RK+I+ + G PN+ Y T+++ Y + + +K G P V
Sbjct: 196 CKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTV 255
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-----HLH---------N 94
TY A+++GFCK G + LL E RG+T NV T+I H H
Sbjct: 256 ETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEG 315
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I+ G P +T+N +I C GK+ +A LL G +P++ Y LI +Q
Sbjct: 316 MIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQ 373
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + I+ M + G P++ TY L EA ++L GL P+ ++YT ++
Sbjct: 308 KAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLI 367
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
+CK G + L E ERG P++VT L+H +++ G
Sbjct: 368 HAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVF 427
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +N ++ LC K+ A LLL M + +P +Y TL+
Sbjct: 428 PDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLV 472
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++++ G PN +YT L A L+ + G KPD+
Sbjct: 336 CRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDL 395
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-----------------VTLIHLHN 94
TY A++ G G + + + + +ERGV P+ + L
Sbjct: 396 VTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAE 455
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D +P + ++ G +D+A L L E G P Y+ +IK
Sbjct: 456 MLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIK 508
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + + M + G P+ Y IL A +L + + + PD + Y ++D
Sbjct: 414 ALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVD 473
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GF + G +E +L IE+G+ P +V +N +I+ C G
Sbjct: 474 GFIRNGNLDEARKLFELTIEKGMNPGIV------------------GYNAMIKGYCKFGM 515
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ A+ + M + P Y T+I
Sbjct: 516 MKDAMACINRMKKRHLAPDEFTYSTVI 542
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EARK+ + + G +P + Y + +A + +K L PD +TY+ V+
Sbjct: 483 EARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVI 542
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
DG+ K + ++ E ++ PNV+ L ++ I IP F N+
Sbjct: 543 DGYVKQHDLDGAQKMFREMVKMKCKPNVMD--GLQGLLLI--IPSLFAFANM 590
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E +D M NG PN + I+ EA ++ ++ GL P+
Sbjct: 354 YATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPN 413
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V Y ++D CK+GR ++ N+ I GV PN+V L
Sbjct: 414 VVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFF 473
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G P + FN ++ LC G++ KA L+ LM G P Y+ LI+
Sbjct: 474 EMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIR 527
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EARK+ D M G P+V+ Y I+ E + L + +G+ P+
Sbjct: 320 CKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNH 379
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HLHN 94
Y + V F K E M++ N+ ++G++PNVV TLI +
Sbjct: 380 YIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQ 439
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G P + F +++ LC + K +KA L F M G P+ ++T++ L
Sbjct: 440 MINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNL 494
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYH---PNVTTYTIL-----------EAYEMLMNVKNDGL 47
+C++N EA +++ M D PN+ +Y + +AY + +++ + G+
Sbjct: 176 FCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGI 235
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI----- 101
P+V TYT V+DG CK + + + I++GV PN+VT L H + IG
Sbjct: 236 PPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVR 295
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ ++ LC GK +A L M G P ++Y ++
Sbjct: 296 MLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIIL 351
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+++ID M G P++ +Y L EA ++L + + GLKP+
Sbjct: 495 CTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNE 554
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ G+C+ GR ++ + E + G+TP VV T+N ++
Sbjct: 555 CTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVV------------------TYNTIL 596
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
L + +A L M GK S Y+ ++ L +
Sbjct: 597 HGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSK 636
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPD 50
YC +A V M NG P V TY TIL EA E+ +N+ G +
Sbjct: 564 YCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWS 623
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY +++G K +E +++ + + ++ ITFN +
Sbjct: 624 IYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDI------------------ITFNIM 665
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I AL G+ + A+ L + +G +P T Y + + L ++
Sbjct: 666 IGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEE 707
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE---RGVTPNVV---TLIH 91
+L + G P+V +Y ++ GFC R+ E +ELL+ + R PN+V T+I+
Sbjct: 153 LLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVIN 212
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ D G P +T+ VI LC +D+A + M + G P
Sbjct: 213 GFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRP 272
Query: 138 SRTLYDTLI 146
+ Y LI
Sbjct: 273 NIVTYTCLI 281
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 21/160 (13%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EA+++ M +G ++ TY I+ EA +M ++ + L+ D+ T+
Sbjct: 605 FSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNI 664
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNNVIQALC 115
++ K GR + M L G+ P+V T + N+I+ G + F+ + +
Sbjct: 665 MIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEE---FDGMFSEME 721
Query: 116 GVGKIDKALLLLFLMYE---HGKIPSRTLYDTLIKKLDQQ 152
G +L+L FL+ G I Y + K+D++
Sbjct: 722 KSGCAPNSLMLNFLVRRLLLRGDISRAGAY---LSKIDEK 758
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 24/123 (19%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------- 89
+ PDV+TY+ ++ FC++GR ++ G N V +
Sbjct: 90 VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149
Query: 90 --IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI----PSRTLYD 143
+ L + ++G P +++N +++ C + ++AL LL +M + G++ P+ Y+
Sbjct: 150 MGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMAD-GQVRSCPPNLVSYN 208
Query: 144 TLI 146
T+I
Sbjct: 209 TVI 211
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 79/219 (36%), Gaps = 69/219 (31%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL---------------------------- 33
C A +V++ M D+ + PNV TY TIL
Sbjct: 233 CKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLN 292
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
EA ++ + G +PDV TY+++++G CK G+ E +E +
Sbjct: 293 VVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVR 352
Query: 76 EAIERGVTPNVVTLIHL-HNVIDIGHI---------------------PRTITFNNVIQA 113
E G PN VT L H + G + P T+N +I
Sbjct: 353 EMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGG 412
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G+ID AL M G P Y T+++ L +
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARS 451
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 30/170 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK--PDVYTYTA 56
+ ++++ M G PNV +Y L EA E++ ++ + G + PD+ TY+
Sbjct: 28 DCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYST 87
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIG 99
++ G+CK G+ E ELL E I RG+ P+ + + +I G
Sbjct: 88 LLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAG 147
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ITFN +I C ++ A LL M G Y+TL+ L
Sbjct: 148 CCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGL 197
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + EA +++ M G P++ TY+ L E+ E+L V + GL+P
Sbjct: 56 CKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRP 115
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------L 92
D YT VM CK R E +ELL E I G P ++ TLI L
Sbjct: 116 DALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLL 175
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +T+N ++ LC G++ +A LL M G P Y + +
Sbjct: 176 QTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFV 229
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 37/143 (25%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + A ++ M +G +V TY L EA ++L +K G PDV
Sbjct: 163 CREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDV 222
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----DIGHIPRTITF 107
Y++ + G CK G+ +++ H V+ D H P +T+
Sbjct: 223 VAYSSFVYGLCKSGK----------------------VLNAHQVLEQMRDSDHDPNVVTY 260
Query: 108 NNVIQALCGVGKIDKALLLLFLM 130
N ++ LC GKID AL ++ M
Sbjct: 261 NTILDGLCKSGKIDTALEMMEQM 283
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 29/143 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P + T+ L A +L + G+K DV TY +MDG CK GR
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGR 202
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
E +LL G P+VV +++ + LC GK+ A +
Sbjct: 203 LQEAEQLLERMKASGCAPDVVA------------------YSSFVYGLCKSGKVLNAHQV 244
Query: 127 LFLMYEHGKIPSRTLYDTLIKKL 149
L M + P+ Y+T++ L
Sbjct: 245 LEQMRDSDHDPNVVTYNTILDGL 267
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLH-- 93
G P+ T+ A+++GF K GR + LL RG+ PNVV+ L H
Sbjct: 5 GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEA 64
Query: 94 -----NVIDIG--HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++I G P +T++ ++ C GK++++ LL + G P +Y ++
Sbjct: 65 EELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVM 124
Query: 147 KKL 149
L
Sbjct: 125 ASL 127
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+ V+ M G P+V TY L +A + + G+ P+
Sbjct: 292 FCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPN 351
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID 97
+++Y+ ++ GFCK+ + +E M L E + P+VVT + + ++D
Sbjct: 352 IHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVD 411
Query: 98 IGH---IPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
H +P IT+N+++ ALC ++DKA+ LL M + G P Y TL+ L
Sbjct: 412 EMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGL 467
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGY-HPNVTTYTILEAY----------EMLMNVKNDGLKPDVYTYTAVMD 59
A K++D M D G H +T +IL+A +L +K++G++PD+ TYT ++D
Sbjct: 406 ALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVD 465
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK GR + + + + +G ++D+ + +IQ C G
Sbjct: 466 GLCKNGRLEDARIVFEDLLVKGY------------ILDVN------IYTAMIQGFCSHGL 507
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D++L LL M E+G IP+ Y+ +I L
Sbjct: 508 FDESLDLLSKMEENGCIPNAVTYEIIICSL 537
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A + D + G+H N +Y L A ++L V ++P+V
Sbjct: 153 CLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNV 212
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------LHNV 95
Y ++D CKV NE +L +E + +G++P+VVT LI L N
Sbjct: 213 VMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNK 272
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ +I P TFN ++ C ++ +A +L +M + G P Y++L+ +
Sbjct: 273 MIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDR 326
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
GY PNV T T L +A + V G + +Y +++G CKVG+++
Sbjct: 137 GYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAA 196
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
++LL + V PNVV +N +I ++C V +++A L M
Sbjct: 197 LQLLRRVDGKLVQPNVV------------------MYNTIIDSMCKVKLVNEAFDLYSEM 238
Query: 131 YEHGKIPSRTLYDTLI 146
G P Y+ LI
Sbjct: 239 VSKGISPDVVTYNALI 254
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ ++ ++ L++ KN KP ++ + ++ K + V+ L + G+T ++V L
Sbjct: 53 HNLVSSFNRLLHQKNP--KPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVIL 110
Query: 90 IHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
L N ++ +G+ P IT +I+ LC G+I +AL +
Sbjct: 111 SILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVA 170
Query: 133 HGKIPSRTLYDTLIKKL 149
G ++ Y TLI L
Sbjct: 171 LGFHLNKVSYGTLINGL 187
>gi|125586172|gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group]
Length = 523
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 38/186 (20%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK- 48
C C + A +V D M G P + TY L EA ++L +K +
Sbjct: 207 CLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQT 266
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI------- 101
PD+YT+T V+DGFCKVGR++E + ++A+ G++P + T +N + GH
Sbjct: 267 PDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTIFT----YNALLNGHCKEGNPLK 322
Query: 102 ---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P I+F+ V+QAL G+ A M G DTL
Sbjct: 323 AYSLLMEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLA 382
Query: 147 KKLDQQ 152
+ L +Q
Sbjct: 383 RGLCRQ 388
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 28/157 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C K EA++ +D M G+ P V T++ + A E+ ++ G +P
Sbjct: 172 CLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEP 231
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ TY +++ G C VGR E ++LLN+ E +P P TF
Sbjct: 232 TIRTYNSLIGGLCYVGRLEEALDLLNKLKE---SPK--------------QTPDIYTFTI 274
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+ C VG+ D+A + +G P+ Y+ L+
Sbjct: 275 VLDGFCKVGRTDEATPIFHDAVRNGLSPTIFTYNALL 311
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------ 88
A + ++ +G+ PD +Y + C+ G +E E L+E + RG P V T
Sbjct: 147 AVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVG 206
Query: 89 -------LIHLHNVID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ V D +G P T+N++I LC VG++++AL LL + E K
Sbjct: 207 CLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPK 264
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 49/199 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNV-KNDGLKP 49
+C EA + NG P + TY L +AY +LM + N P
Sbjct: 279 FCKVGRTDEATPIFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPP 338
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLN---------------------------------- 75
D +++ V+ + G ++ +
Sbjct: 339 DRISFSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQCAANVAALAD 398
Query: 76 --EAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
EA+ RG + + L + G+ R + +V++ALC G+ AL +L L+
Sbjct: 399 AREALARGGEVDAAVSL-LGEMARRGYALRKRAYTDVVRALCERGRARDALRVLALVIAR 457
Query: 134 GKIPSRTLYDTLIKKLDQQ 152
+P R +D L+ +L +Q
Sbjct: 458 DFVPGRNAFDALLGELARQ 476
>gi|115452873|ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|108708021|gb|ABF95816.1| expressed protein [Oryza sativa Japonica Group]
gi|113548508|dbj|BAF11951.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|125543773|gb|EAY89912.1| hypothetical protein OsI_11461 [Oryza sativa Indica Group]
gi|215712300|dbj|BAG94427.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 545
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 38/186 (20%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK- 48
C C + A +V D M G P + TY L EA ++L +K +
Sbjct: 207 CLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQT 266
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI------- 101
PD+YT+T V+DGFCKVGR++E + ++A+ G++P + T +N + GH
Sbjct: 267 PDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTIFT----YNALLNGHCKEGNPLK 322
Query: 102 ---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P I+F+ V+QAL G+ A M G DTL
Sbjct: 323 AYSLLMEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLA 382
Query: 147 KKLDQQ 152
+ L +Q
Sbjct: 383 RGLCRQ 388
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 28/157 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C K EA++ +D M G+ P V T++ + A E+ ++ G +P
Sbjct: 172 CLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEP 231
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ TY +++ G C VGR E ++LLN+ E +P P TF
Sbjct: 232 TIRTYNSLIGGLCYVGRLEEALDLLNKLKE---SPK--------------QTPDIYTFTI 274
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+ C VG+ D+A + +G P+ Y+ L+
Sbjct: 275 VLDGFCKVGRTDEATPIFHDAVRNGLSPTIFTYNALL 311
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------ 88
A + ++ +G+ PD +Y + C+ G +E E L+E + RG P V T
Sbjct: 147 AVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVG 206
Query: 89 -------LIHLHNVID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ V D +G P T+N++I LC VG++++AL LL + E K
Sbjct: 207 CLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPK 264
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +P YTY + + G + + LL E RG + R
Sbjct: 410 GHEPVSYTYCLMAQALARGGEVDAAVSLLGEMARRG------------------YALRKR 451
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ +V++ALC G+ AL +L L+ +P R +D L+ +L +Q
Sbjct: 452 AYTDVVRALCERGRARDALRVLALVIARDFVPGRNAFDALLGELARQ 498
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V + + G P+V ++ L E + + + G++PD
Sbjct: 135 FCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 194
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E +++G+ PN VT L
Sbjct: 195 VYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYK 254
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 255 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 240 HCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 299
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G E I+ + + V LI L
Sbjct: 300 KITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLR 359
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P T T+ +I C G + LL M G +PS Y+ L+
Sbjct: 360 EMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV+++M Y V + YE ++ G +Y + +M FCK G
Sbjct: 90 FDTCRKVLEHMMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKEGDI 141
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ N + G+ P+VV+ L N I +G + P T++ +
Sbjct: 142 RVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVL 201
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M + G +P+ + TLI
Sbjct: 202 INGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 237
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + + +A KV+ M G P+ TYT + ++L ++ DG P V
Sbjct: 346 CQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSV 405
Query: 52 YTYTAVMDG 60
TY +M+G
Sbjct: 406 VTYNVLMNG 414
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ M DNG PN TYT + EA +M + GL PD+
Sbjct: 162 CKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDI 221
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITFNN- 109
++ + MD CK GRS E E+ +G PN+VT I LH G ++F N
Sbjct: 222 VSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNT 281
Query: 110 ---------------VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I A G +D+A+L+L M G P Y TLI L
Sbjct: 282 MKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISAL 336
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 19/120 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNE-AIERGV-TPNVVT---LIH--------- 91
G PD ++Y V+ C RS + ++LL A E GV +P+VVT +IH
Sbjct: 74 GCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIG 133
Query: 92 -----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H ++ G +P +T N++I ALC +D A LLL M ++G P++ Y ++I
Sbjct: 134 KACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMI 193
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F + + M +G N +TIL EA +L ++ GL PD
Sbjct: 266 YATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPD 325
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V+TY+ ++ C++GR + ++ N+ I GV PN V +LI ++
Sbjct: 326 VFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVY 385
Query: 94 NVIDIGHIPR--TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G IPR FN+++ ++C G++ A + L+ + G+ +++TLI
Sbjct: 386 EMMNNG-IPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLI 439
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGY-HPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
+C D +A++++ M +NG PN+ + +++A+ + VK+ G +
Sbjct: 371 FCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERS 430
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI------- 101
D+ + ++DG+C VG + +L+ I G+ P+ T L N G I
Sbjct: 431 DIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLF 490
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+T+N ++ L G+ A +L M G S Y+ ++K L
Sbjct: 491 REMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGL 547
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 25 PNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TY I +A + + G PDV T+ ++++ CK + L
Sbjct: 114 PDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELL 173
Query: 74 LNEAIERGVTPNVVT---LIHLHNVI--------------DIGHIPRTITFNNVIQALCG 116
L + ++ GV PN VT +IH ++ + G IP +++N+ + +LC
Sbjct: 174 LRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCK 233
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+ +A + + M G P+ Y L+
Sbjct: 234 HGRSKEAAEIFYSMAAKGHRPNIVTYGILL 263
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 35/181 (19%)
Query: 6 NDFFEARKVID------YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
N +F++ ++ D M D P TY I+ A +ML + G
Sbjct: 475 NGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTT 534
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
+ TY ++ G C+ ++E + + + V N+ TL + N
Sbjct: 535 VSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDL 594
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLD 150
+ D G +P T+ +I+ L G +++A + M + G P SR L DT+ L+
Sbjct: 595 FSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLE 654
Query: 151 Q 151
+
Sbjct: 655 K 655
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C E + + M D G PNV+TY L A ++L ++N LK
Sbjct: 387 AFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKA 446
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVIDI- 98
DV TY ++ G+CK G ++ +LL E + GV PN VT +L + +
Sbjct: 447 DVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVR 506
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
G +T+N +I+ C GK++ A LL M E G P+RT YD +
Sbjct: 507 TQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 31/179 (17%)
Query: 2 YCNKND---FFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGL 47
+C K + A ++ M N PN T+ +L A ++ GL
Sbjct: 245 HCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGL 304
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------- 96
KP++ TY ++++G G+ +E + L ++ + G+ PN+VT L N
Sbjct: 305 KPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARK 364
Query: 97 ---DIGH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
DI +P ITFN +I A C G +++ L M + G P+ + Y+ LI L
Sbjct: 365 LFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGL 423
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 14/114 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C + +A K++ M + G PN TY T+++ Y M N+K +G + +
Sbjct: 458 WCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRAN 517
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--LIHLHNVIDIGHIP 102
V TY ++ GFCK G+ + LLNE +E+G+ PN T ++ L +++ G IP
Sbjct: 518 VVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLE-MLEKGFIP 570
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 31/172 (18%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
N+ E + V M PN+TT+ I +A +++ ++K G P++ TY
Sbjct: 179 NETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTY 238
Query: 55 TAVMDGFCKVGRSNEVME---LLNEAIERGVTPNVVTLIHL-------HNVIDI------ 98
++DG CK G + ++ +L E + + PN +T L NV+
Sbjct: 239 NTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEE 298
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N++I L GK+D+A+ L M G P+ ++ LI
Sbjct: 299 MQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALI 350
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N EA + D M G PN+ T+ L EA ++ ++ L P+
Sbjct: 320 NNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAI 379
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI---- 101
T+ ++D FCK G E L N ++ G+ PNV T L NV +
Sbjct: 380 TFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEM 439
Query: 102 ------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+N +I C G+ KA LL M G P+ Y+TL+
Sbjct: 440 ENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLM 490
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 28/128 (21%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH------ 100
++P++ T+ ++G CK G+ N+ +++ + G +PN+VT +N + GH
Sbjct: 196 IQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVT----YNTLIDGHCKKGSA 251
Query: 101 ------------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P ITFN +I C + A M G P+ Y
Sbjct: 252 GKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTY 311
Query: 143 DTLIKKLD 150
++LI L
Sbjct: 312 NSLINGLS 319
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 27 VTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
VT I A E+ V++ G K + + ++ K + E+ + E I+R + PN+
Sbjct: 141 VTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNL 200
Query: 87 VTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN I LC GK++KA ++ + G P+ Y+TLI
Sbjct: 201 T------------------TFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLI 242
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V + + G P+V ++ L E + + + G++PD
Sbjct: 146 FCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E +++G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLI 318
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 28/165 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A +++ + GLKPD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-------GVTPNVVTLIH----------LH 93
TYT ++DG CK G E I+ G T + L L
Sbjct: 311 KITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
++ +G P TIT+ +I C G + LL M G++PS
Sbjct: 371 EMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPS 415
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H I A + + GL+P V ++ +M+G+ ++G +E L
Sbjct: 137 YFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTA 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C G+
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M P Y+TLI
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLI 283
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +AR +ID M G P+ TYT L
Sbjct: 287 CRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A ++L + + GLKPD TYT +++ FCK G +LL E
Sbjct: 347 VGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 407 MQRDGQMPSVVT 418
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHKFCKDGDI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ N + G+ P+VV+ L N I +G + P T++ +
Sbjct: 153 RVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M + G +P+ + TLI
Sbjct: 213 INGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 248
>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K+ A +++ M + GY P+ +YT L EAY++L +K G PD+
Sbjct: 199 CRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDI 258
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HLHN 94
Y V+ GFC+ GR + ++L + G +PN++ TL+ ++
Sbjct: 259 VHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEE 318
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P F+ +I C VGK+++A +L M HG+ + +I ++
Sbjct: 319 MLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWVAIIPRI 373
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A KV++ M NG PN+ +Y L EA + + + G P
Sbjct: 268 FCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKGFSPH 327
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ A+++GFC VG+ E E+L E + G + T + + IPR + +
Sbjct: 328 FSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWVAI--------IPRICEVDKL 379
Query: 111 IQ 112
++
Sbjct: 380 VR 381
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I A+++ + G+ PD +Y +M FC G + L N+ +R V P+V +
Sbjct: 134 IRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRI 193
Query: 89 LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L+ L ++++ G++P +++ ++ +LC K+ +A LL M G
Sbjct: 194 LMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKG 253
Query: 135 KIPSRTLYDTLI 146
P Y+T+I
Sbjct: 254 CNPDIVHYNTVI 265
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ + EA+ ++ M G+ P+ + + L EA E+L + G
Sbjct: 304 CDQGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHT 363
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
T+ A++ C+V + + + +E ++ +TPN
Sbjct: 364 ETWVAIIPRICEVDKLVRMENIFDEXLKLEITPN 397
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 29/168 (17%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKND-GLKPDVYTYT 55
+ ARKV D M P V T+ L +A + L +D G+KPDVYTY
Sbjct: 201 ELVSARKVFDEM-RRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYG 259
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH----NV---IDI------- 98
A++ GFC+ GR +++ NE + GV PN V TLI H NV +D+
Sbjct: 260 ALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVR 319
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P + +N ++ LC + A ++ M G P + Y TLI
Sbjct: 320 GVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLI 367
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 32/154 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +V+ M + P+ TTYT++ +++L ++N G KP V TY +M
Sbjct: 413 DAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIM 472
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G CK+G+ L LH +++IG P IT+N ++ C G
Sbjct: 473 NGLCKLGQMKNADML------------------LHAMLNIGVSPDDITYNILLDGQCKHG 514
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
K+ + L G +P +Y +LI +L ++
Sbjct: 515 KVANSEE---LESSKGMVPDFAVYTSLISELAKK 545
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + + M G P++ Y L A ++ +KN GLKPD
Sbjct: 300 HCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPD 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TYT ++DG CK G+ + M++ + E+ V+ + VT LI L
Sbjct: 360 KVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLR 419
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ P T+ VI A C G + LL M GK P Y+ ++ L
Sbjct: 420 EMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGL 475
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C K DF +++ M G NV Y I++A E + + G KPD
Sbjct: 284 FCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPD 343
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+ TY ++ G C+ G+ +E +LL +A+ +G+ PN + LIH L
Sbjct: 344 IVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLI 403
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + GH P +T+ ++ L G++D AL + M E G P +Y+ L+ L
Sbjct: 404 EMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGL 459
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + E RK+I+ + G PN+ Y T+++ Y + + +K G P V
Sbjct: 215 CKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTV 274
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-----HLH---------N 94
TY A+++GFCK G + LL E RG+T NV T+I H H
Sbjct: 275 ETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEG 334
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I+ G P +T+N +I C GK+ +A LL G +P++ Y LI +Q
Sbjct: 335 MIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQ 392
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + I+ M + G P++ TY L EA ++L GL P+ ++YT ++
Sbjct: 327 KAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLI 386
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
+CK G + L E ERG P++VT L+H +++ G
Sbjct: 387 HAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVF 446
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +N ++ LC K+ A LLL M + +P +Y TL+
Sbjct: 447 PDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLV 491
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 42/187 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++D A+K+ M PNV TYT L + ++ ++ GL P+
Sbjct: 564 YVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPN 623
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
V TY+ ++ FCK + + E + PN VT +L N
Sbjct: 624 VVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNE 683
Query: 95 ---------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+I G PR+ +N+++ LC G AL L M G IP
Sbjct: 684 FQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDS 743
Query: 140 TLYDTLI 146
+ L+
Sbjct: 744 VSFVALL 750
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++++ G PN +YT L A L+ + G KPD+
Sbjct: 355 CRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDL 414
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-----------------VTLIHLHN 94
TY A++ G G + + + + +ERGV P+ + L
Sbjct: 415 VTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAE 474
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D +P + ++ G +D+A L L E G P Y+ +IK
Sbjct: 475 MLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIK 527
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EARK+ + + G +P + Y + +A + +K L PD +TY+ V+
Sbjct: 502 EARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVI 561
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-------GHI 101
DG+ K + ++ E ++ PNVVT LI+ LH + I G +
Sbjct: 562 DGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLV 621
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I + C K+ A M + +P+ ++ L+
Sbjct: 622 PNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLV 666
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + + M + G P+ Y IL A +L + + + PD + Y ++D
Sbjct: 433 ALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVD 492
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GF + G +E +L IE+G+ P +V +N +I+ C G
Sbjct: 493 GFIRNGNLDEARKLFELTIEKGMNPGIV------------------GYNAMIKGYCKFGM 534
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ A+ + M + P Y T+I
Sbjct: 535 MKDAMACINRMKKRHLAPDEFTYSTVI 561
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC +A I+ M P+ TY T+++ Y +M + KP+
Sbjct: 529 YCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPN 588
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V TYT++++GFC+ G + +++ E G+ PNVVT
Sbjct: 589 VVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVT 626
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + D A K M P+V TYT ++EA ++ + GL+PD
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
T+T +++G+CK G + + N I+ G +PNVVT LH
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ IG P T+N+++ LC G I++A+ L+ G Y TL+
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G P+ YT L A + + + + PDV
Sbjct: 327 CRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 386
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HN- 94
TYTA++ GFC++G E +L +E +G+ P+ VT L HN
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+ +I LC G +D A LL M++ G P+ Y++++ L
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 501
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A +++ M+ G PN+ TY I EA +++ + GL D
Sbjct: 467 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 526
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------IHLHNVIDIGH----- 100
TYT +MD +CK G ++ E+L E + +G+ P +VT LH +++ G
Sbjct: 527 VTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 586
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P TFN++++ C + A + M G P Y+ L+K
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVK 639
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
YC + + K+I+ M G PN Y + EA E + G+ PD
Sbjct: 291 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPD 350
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
YT ++DGFCK G + E R +TP+V+T + ++++ G +
Sbjct: 351 TVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFH 410
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P ++TF +I C G + A + M + G P+ Y TLI L ++
Sbjct: 411 EMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 469
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------ 85
I EA+ +L+ ++ G PDV +Y+ V++G+C+ G ++V +L+ +G+ PN
Sbjct: 262 IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 321
Query: 86 VVTLI-----------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
++ L+ +I G +P T+ + +I C G I A + M+
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381
Query: 135 KIPSRTLYDTLIKKLDQ 151
P Y +I Q
Sbjct: 382 ITPDVLTYTAIISGFCQ 398
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTT------------YTILEAYEMLMNVKNDGLKPDVYTYTAV 57
EAR+V + M + G +V + Y A + G+ +V +Y V
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ C++GR E LL +G TP+V I+++ V+ C
Sbjct: 253 IHFVCQLGRIKEAHHLLLLMELKGYTPDV------------------ISYSTVVNGYCRF 294
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++DK L+ +M G P+ +Y ++I
Sbjct: 295 GELDKVWKLIEVMKRKGLKPNSYIYGSII 323
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C + K++++M G PN TT+ ++++ Y + N+K + G+ PD
Sbjct: 571 FCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPD 630
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
TY ++ G CK E L E +G + +V T ++V+ G + R
Sbjct: 631 GKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST----YSVLIKGFLKR 679
>gi|326497659|dbj|BAK05919.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 523
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D A+ V + M G P+ +YT L E +++M ++ G K D
Sbjct: 328 HCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKAD 387
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
V TY +++G CK GR EVM+LL E GV NV + I ++ + G +
Sbjct: 388 VVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSSGDMEKAVGLLG 447
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P N ++ LC VG++ A L+ + + G +P + + LI+ +
Sbjct: 448 LMLGRGFLPHYAASNKLLIGLCDVGRVADATAALYGLAKFGFMPEASCWAKLIEAV 503
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 32/180 (17%)
Query: 2 YCNKNDFFEARKVIDYMFD---NGYHPNVTTYTIL-----------EAYEMLMN-VKNDG 46
Y D A +V+D M + PN+ TY+ L EA+E+ ++ D
Sbjct: 219 YVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDH 278
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH---------- 93
+ PD TY ++DGFC++G+ + + + PN TLI+ H
Sbjct: 279 IVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNECEPNAFNYATLINGHCKKGDVENAK 338
Query: 94 ----NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +++ +I LC G +D+ + L+ M E G Y+ L++ L
Sbjct: 339 LVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGL 398
>gi|224088774|ref|XP_002308534.1| predicted protein [Populus trichocarpa]
gi|222854510|gb|EEE92057.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K + EARK +D M G +PN+ TY + EA +L ++ +G+K +
Sbjct: 278 YCKKGELNEARKWMDGMLIRGCNPNLWTYNAIIYGLCLRGNVDEARRLLTKMRLNGVKEN 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTL----------IHLHN 94
V T+ +++ G G+S E + +E I +G+ + V+T I L
Sbjct: 338 VATHLSILKGLSVAGKSEEAIGYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLK 397
Query: 95 VIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ I R++ +FN V++ L +G++DKA+LLL + G +P+ Y T+I
Sbjct: 398 EMQAKGISRSVGSFNAVLRILVEIGELDKAVLLLKQVKNMGCLPNLVSYSTVI 450
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 33/161 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAYEMLMNVKNDGL-----------KP 49
+C ARKV D M PN +T T++ Y +++N + P
Sbjct: 210 FCKVGMIDNARKVFDEMI---CEPNLITCNTLINGYCKKGDMENARIFLCRMMESKDCLP 266
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D TY+ ++DG+CK G NE + ++ + RG PN+ T+N
Sbjct: 267 DTVTYSTLIDGYCKKGELNEARKWMDGMLIRGCNPNL------------------WTYNA 308
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+I LC G +D+A LL M +G + + +++K L
Sbjct: 309 IIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKGLS 349
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 44 NDGL-KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP 102
ND + KPD TYT ++ GFCKVG + ++ +E I PN+
Sbjct: 192 NDAVVKPDASTYTTMIRGFCKVGMIDNARKVFDEMI---CEPNL---------------- 232
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLI 146
IT N +I C G ++ A + L M E +P Y TLI
Sbjct: 233 --ITCNTLINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLI 275
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 146 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 318
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TYT ++DG CK G + E I+ + + V LI L
Sbjct: 311 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T+ +I C G + K LL M +G PS Y+ L+
Sbjct: 371 EMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 423
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGF-----YEDILEC---GYPASLYFFNILMHRFCKDGDI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 153 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 213 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A + + M + G PN TYT L +AYE++ + N+G P+
Sbjct: 982 YCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPN 1041
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +++DG CK GR+ E +LLN + + + +T+ +
Sbjct: 1042 TCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD------------------GVTYTIL 1083
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I C +++AL+ L M++ G P LY TLI +Q
Sbjct: 1084 ISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQ 1125
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 29/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C + +A ++++ M NG+ PNV T+T L A+ + + +++D KP+
Sbjct: 912 CKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPN 971
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH----------NVID 97
V+TYTA++ G+CK + + L E+G+ PN TLI H +++
Sbjct: 972 VHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELME 1031
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ G P T T+N+++ LC G+ ++A LL
Sbjct: 1032 LMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 1065
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + I M + G+ + T T++ A V GL P+
Sbjct: 841 YCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPN 900
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------------L 92
+ Y++++ G CK G + ELL E ++ G PNV T LIH L
Sbjct: 901 LINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFL 960
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + P T+ +I C K+ +A +L M E G +P+ Y TLI
Sbjct: 961 KLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLI 1014
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 43/174 (24%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA K+++ F N + TYTIL +A L + G +PD+
Sbjct: 1053 CKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDI 1112
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+ YT ++ FC+ + +L +E I+ G+ P T +
Sbjct: 1113 HLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQK 1172
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ D G P +I++ +I LC ++D+A R LYDT+I K
Sbjct: 1173 MSDHGCAPDSISYGALISGLCKESRLDEA---------------RQLYDTMIDK 1211
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +N ++ K+ D + G P TYT + A + + + G PD
Sbjct: 1122 FCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPD 1181
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+Y A++ G CK R +E +L + I++G++P VT + L
Sbjct: 1182 SISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTL 1223
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI--------------- 90
G+ PD TY ++ G+C+ G E + E +ERG + TL
Sbjct: 826 GVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRA 885
Query: 91 --HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
H V +G P I ++++I LC G + +A LL M ++G P+ + +LI
Sbjct: 886 VWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHG 945
Query: 149 L 149
L
Sbjct: 946 L 946
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A + + M + G PN TYT L +AYE++ + N+G P+
Sbjct: 395 YCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPN 454
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +++DG CK GR+ E +LLN + + + +T+ +
Sbjct: 455 TCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD------------------GVTYTIL 496
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I C +++AL+ L M++ G P LY TLI +Q
Sbjct: 497 ISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQ 538
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 29/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C + +A ++++ M NG+ PNV T+T L A+ + + +++D KP+
Sbjct: 325 CKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPN 384
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH----------NVID 97
V+TYTA++ G+CK + + L E+G+ PN TLI H +++
Sbjct: 385 VHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELME 444
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ G P T T+N+++ LC G+ ++A LL
Sbjct: 445 LMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 478
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + I M + G+ + T T++ A V GL P+
Sbjct: 254 YCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPN 313
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------------L 92
+ Y++++ G CK G + ELL E ++ G PNV T LIH L
Sbjct: 314 LINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFL 373
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + P T+ +I C K+ +A +L M E G +P+ Y TLI
Sbjct: 374 KLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLI 427
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 43/174 (24%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA K+++ F N + TYTIL +A L + G +PD+
Sbjct: 466 CKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDI 525
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+ YT ++ FC+ + +L +E I+ G+ P T +
Sbjct: 526 HLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQK 585
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ D G P +I++ +I LC ++D+A R LYDT+I K
Sbjct: 586 MSDHGCAPDSISYGALISGLCKESRLDEA---------------RQLYDTMIDK 624
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +N ++ K+ D + G P TYT + A + + + G PD
Sbjct: 535 FCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPD 594
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+Y A++ G CK R +E +L + I++G++P VT + L
Sbjct: 595 SISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTL 636
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI--------------- 90
G+ PD TY ++ G+C+ G E + E +ERG + TL
Sbjct: 239 GVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRA 298
Query: 91 --HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
H V +G P I ++++I LC G + +A LL M ++G P+ + +LI
Sbjct: 299 VWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHG 358
Query: 149 L 149
L
Sbjct: 359 L 359
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA K+ D M G P TY+ L +A ++ ++ +GL P+
Sbjct: 641 YCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPN 700
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLH 93
V YTA++ G+CK+G+ ++V+ +L E + PN +T LH
Sbjct: 701 VVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLH 760
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
++ G +P T+T+N + C GKI++ + M + G Y TL+ QQP
Sbjct: 761 EMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGW-QQP 819
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + + M +G + + TY++L EA +L G P+
Sbjct: 292 CKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNE 351
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++DG+CK+G + + + + + +G+ PN VTL N++I
Sbjct: 352 VVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTL------------------NSII 393
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
Q C +G++++A +L M G + + T+I L
Sbjct: 394 QGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWL 431
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAV 57
F A V ++ + G P V T T L E + G+ PDVY ++
Sbjct: 193 FRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTA 252
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
++ FCK G+ + ++L + + GV+PNVV T+NN+I LC
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVV------------------TYNNLIHGLCKH 294
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +D+A M + G + Y LI L
Sbjct: 295 GNLDEAFRFKEKMVKDGVNATLITYSVLINGL 326
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 82/207 (39%), Gaps = 63/207 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +++ M + G+ + TY L E +++ + G++PD
Sbjct: 502 CKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDT 561
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------------- 89
+TY ++ G C++G+ +E + L NE R + PNV T
Sbjct: 562 FTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 621
Query: 90 -----IHLHNVI-------------------------DIGHIPRTITFNNVIQALCGVGK 119
+ L++V+ G P T T++++I +C +G+
Sbjct: 622 LLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGR 681
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ A L+ M + G +P+ Y LI
Sbjct: 682 MEDAKCLIDEMRKEGLLPNVVCYTALI 708
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A +++ M G+ N +T + A L + ++P+
Sbjct: 396 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 455
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
T ++ G CK G+ ++ +EL +E+G N+VT LIH L
Sbjct: 456 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 515
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G + IT+N +I C GK+++ L M + G P Y+ LI
Sbjct: 516 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 568
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ + + G+ N+ T L EA +L + G D
Sbjct: 467 CKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK 526
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ G CK G+ E +L E +++G+ P+ T T+N +I
Sbjct: 527 ITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD------------------TFTYNLLI 568
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+C +GK+D+A+ L +P+ Y +I
Sbjct: 569 HGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 603
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAY----------EMLMNVKNDGLKPD 50
YC + +A ++ M G +PN VT +I++ + +L + + G +
Sbjct: 361 YCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSIN 420
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LH 93
+T ++ C R + L E + R + PN + TL+
Sbjct: 421 PGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWF 480
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G +T N +I LC G + +A+ LL M E G + + Y+TLI
Sbjct: 481 RLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLIS 534
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C FEA+++ M G P+V TY+ L EA + +K ++P+V
Sbjct: 202 CKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNV 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDG CK G S E MELL + + PN+V T++ +I
Sbjct: 262 FTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMV------------------TYSTLI 303
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC GK+ +A+ L M G P LY +I
Sbjct: 304 NGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKII 338
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
TI A+E+ + G PD YTY +++G CK+G++ E EL E +G +P+VVT
Sbjct: 171 TIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYS 230
Query: 91 HL-HNVIDIGHI----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L H + G++ P T+++++ LC G +A+ LL +M
Sbjct: 231 CLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRK 290
Query: 134 GKIPSRTLYDTLIKKL 149
P+ Y TLI L
Sbjct: 291 RHKPNMVTYSTLINGL 306
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 24/157 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++++ M + PN+ TY+ L EA E L +K GLKPD
Sbjct: 272 CKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDA 331
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN-V 110
Y +++GFC + + E L+E + ++PN VT LH + NN V
Sbjct: 332 GLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTW-SLH-----------VKLNNMV 379
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+Q LC G ++++ L M G +D+L+K
Sbjct: 380 VQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVK 416
>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
duartei]
Length = 412
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 133 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPD 192
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 193 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 253 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 305
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A +ID M G P+ TYT L A+E + + ++ D
Sbjct: 274 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDE 333
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P+ T+ +I
Sbjct: 334 VAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDAR------------------TYTMII 375
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + LL M G +PS Y+ L+
Sbjct: 376 NEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLM 410
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 29/133 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A ++ D M G PN T+T L A E+ + + L PD+
Sbjct: 204 CKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ G CK G + L++E +G+ P+ IT+ +I
Sbjct: 264 ITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPD------------------KITYTTLI 305
Query: 112 QALCGVGKIDKAL 124
C G +D A
Sbjct: 306 NGCCKEGDLDSAF 318
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 88 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 139
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 140 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVL 199
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 200 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 235
>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
lycioides]
Length = 397
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V + + G P+V ++ L E + + + G++PD
Sbjct: 135 FCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPD 194
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ E+ +E +++G+ PN VT L
Sbjct: 195 VYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 254
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 255 QMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H I+ A + + GL+P V ++ +M+G+ ++G +E L N
Sbjct: 126 YFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNA 185
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C G+
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGR 245
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M P Y+TLI
Sbjct: 246 VDLAMEIYKQMLSQSLXPDLITYNTLI 272
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 28/147 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 240 HCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 299
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G E I+ + + V LI L
Sbjct: 300 KITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLR 359
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKI 120
++ +G P T T+ +I C G +
Sbjct: 360 EMLSVGLKPDTGTYTMIINEFCKKGDV 386
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 90 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKEGDI 141
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ N + G+ P+VV+ L N I +G + P T++ +
Sbjct: 142 MVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVL 201
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A + M + G +P+ + TLI
Sbjct: 202 INGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLI 237
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 21/161 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ N EA K+ M + PN TY +L A+E+L + GL PD
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY ++ G C GR +E E +N+ N + G +P +T+ +I
Sbjct: 566 YTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIE----------GCLPNVVTYTALI 615
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC +G +DKA LL M +P++ Y + L +
Sbjct: 616 NGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSE 656
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A+ + D M NG PNV YT L A+ + + G+ P+
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH-------------- 93
YT+TA++ G C R E +L E +E V PN VT LI H
Sbjct: 495 TYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLD 554
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+++ G +P T T+ +I LC G++ +A
Sbjct: 555 EMVEKGLVPDTYTYRPLISGLCSTGRVSEA 584
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + M G PN TY+IL A L + G+K V
Sbjct: 366 CKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATV 425
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDIGH- 100
Y Y++++ G CK+G+ L +E I G+ PNVV +LI LHN + H
Sbjct: 426 YPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHE 485
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T TF +I LC ++ +A L M E IP+ Y+ LI+
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 35/180 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND----- 45
+C + + A +++D M + G P+ TY L EA E + +++ +
Sbjct: 540 HCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLN 599
Query: 46 ---GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN----------------V 86
G P+V TYTA+++G CK+G ++ L E + PN +
Sbjct: 600 EIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNI 659
Query: 87 VTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LH+V+ G + T+T+N +I+ C +G+I +A +L M + G P Y T+I
Sbjct: 660 EKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTII 719
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C DF AR+VI M +G +V TY + EA E+ + GL+ DV
Sbjct: 226 CELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADV 285
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY ++ G CKV E++NE IE G P+ + +L +
Sbjct: 286 GTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNK 345
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V G P +N +I ++C GK+D+A L M G P+ Y LI
Sbjct: 346 VKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILI 397
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 29/136 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G+ N TY IL EA E+L+N+ + G+ PD +Y+ ++ +C+ G E
Sbjct: 672 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 731
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
++L + RGV P+ T+ +N +I C G++ KA L M
Sbjct: 732 IKLWESMLNRGVNPD------------------TVAYNFLIYGCCVTGELTKAFELRDDM 773
Query: 131 YEHGKIPSRTLYDTLI 146
G P+R Y++LI
Sbjct: 774 MRRGVKPNRATYNSLI 789
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +F ++++ M + G+ P+ + I A++++ VK G+ P +
Sbjct: 296 CKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSL 355
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+ Y A+++ CK G+ +E L N +G+ PN VT L L
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ ++G ++++I C +GK+ A L M +G P+ +Y +LI
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLIS 468
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 14 VIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V+ M D G P + T + A + + + GL+PDVY YTAV+ C
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLC 226
Query: 63 KVG---RSNEVMELLNEA-----------IERGVTPN--VVTLIHLHNVIDIGHIPRTI- 105
++ R+ EV+ + + RG+ N V + + N++ + +
Sbjct: 227 ELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVG 286
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ ++ LC V + + ++ M E G +PS L+ L ++
Sbjct: 287 TYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKK 333
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + D EA K+ + M + G +P+ Y L +A+E+ ++ G+KP+
Sbjct: 722 YCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPN 781
Query: 51 VYTYTAVMDGFC 62
TY +++ G C
Sbjct: 782 RATYNSLIHGTC 793
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + +++ D M G PNV T L A + + G+K D
Sbjct: 429 FCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGD 488
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYTA+++ FC V + MEL NE ++ G +P+ + TLI L
Sbjct: 489 AVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLA 548
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +G P T+ +N +I C K + +L M E G P Y+TLI
Sbjct: 549 ELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 27/128 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT- 104
G PD TY ++DGFCK G + EL +E + GV PNVVT+ L +G + RT
Sbjct: 414 GCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTL-----VGGMCRTG 468
Query: 105 ---------------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
+T+ +I A C V +KA+ L M + G P +Y
Sbjct: 469 RVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYY 528
Query: 144 TLIKKLDQ 151
TLI Q
Sbjct: 529 TLISGFSQ 536
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 28/159 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPD 50
+C N F +++ M + G P+ TY L AY +++ + G+ P
Sbjct: 569 FCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPT 628
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY AV++ +C G NE ME+ + P P T+ +N +
Sbjct: 629 VATYGAVINAYCLNGNGNEAMEIFKDMKAASKVP-----------------PNTVIYNIL 671
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +LC K+ A+ L+ M G P+ T Y+ + K L
Sbjct: 672 INSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGL 710
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 36/161 (22%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDG---- 46
+ +F ++++ M + PNV T+ IL E E + K G
Sbjct: 318 EGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISV 377
Query: 47 -LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
++PDV Y ++DG CKVGR E + L+ + G P TI
Sbjct: 378 SVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQK-----------------GCAPDTI 420
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N +I C G+I+K L M + G P+ +TL+
Sbjct: 421 TYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLV 461
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F AR M NG TYT + EA +L + DG+ PD+
Sbjct: 379 CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI--- 98
TY+A+++GFCKVGR E++ G++PN + TLI+ L I I
Sbjct: 439 VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 498
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GH TFN ++ +LC GK+ +A + M G +P+ +D LI
Sbjct: 499 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + F ++ ++ M +GY P + TY T+L Y E+L ++K+ G+ DV
Sbjct: 204 CAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADV 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY ++ C+ R + LL + +R + PN V TLI+ L+
Sbjct: 264 CTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNE 323
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +TFN +I G +AL + ++M G PS Y L+ L
Sbjct: 324 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V T+ IL ++ ++ ++ G P + TY V+ +CK GR +EL
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250
Query: 74 LNEAIERGVTPNVVT---LIH---LHNVIDIGHI-----------PRTITFNNVIQALCG 116
L+ +GV +V T LIH N I G++ P +T+N +I
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK+ A LL M G P+ ++ LI
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G P VYT A++ K G V L E ++R + P+V T L NV+
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G+ P +T+N V+ C G+ A+ LL M G Y+ LI
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272
Query: 149 L 149
L
Sbjct: 273 L 273
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTL----------------IH 91
PD YTYT+++ G C+ G++ + EA RG V PN V I+
Sbjct: 646 PDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIY 705
Query: 92 LHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D +GH P +T N +I +GKI+K LL M P+ T Y+ L+
Sbjct: 706 FREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILL 761
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C F A++++ ++ G PN Y+ L EA + + +G D
Sbjct: 448 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+T+ ++ CK G+ E E + G+ PN V+ L N
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +GH P T+ ++++ LC G + +A L ++ +Y+TL+ +
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 623
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N+ A ++++ M G PN T+ L EA +M ++ GL P
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+Y ++DG CK + GV +T ++ L+
Sbjct: 368 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLN 427
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T++ +I C VG+ A ++ +Y G P+ +Y TLI
Sbjct: 428 EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E+ +L + G+ P+ Y +++G C+VG + E I + P
Sbjct: 877 ESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICP--------P 928
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
NV + + +++AL GK D+A LLL M + +P+ + TL+
Sbjct: 929 NVAE----------SAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 971
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K D EA ++ +M P + ++T ++EA E+ + + N GLK D+
Sbjct: 942 CGKAD--EATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 999
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y ++ G C G EL E G N T + + G + R F+
Sbjct: 1000 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATT----YKALIRGLLARETAFSGA 1054
>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
micrantha]
Length = 431
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + + EL +E + +G+ PN VT L
Sbjct: 212 VYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TYT ++DG CK G + E I+ + + V LI L
Sbjct: 317 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T T+ +I C G + K LL M+ G PS Y+ L+
Sbjct: 377 EMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLM 429
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 159 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 219 INGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLI 254
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ +MFD G PN TY I+ EA +L + GL+PDV
Sbjct: 249 CKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDV 308
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------------TLIHLHNVIDI 98
TY ++ +CK+GR E + + + +G PN LI + +++D+
Sbjct: 309 VTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDL 368
Query: 99 ---GHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IP FN +I A G +DKA+ M ++G P Y T+I
Sbjct: 369 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVI 420
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG---LKPDVYTYTAVMD 59
V M + GY P+V +Y L EA E+L+++ DG P+V +Y+ ++D
Sbjct: 152 VFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIID 211
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIP 102
GF K G ++ L +E I +G P+VVT LI L ++ D G +P
Sbjct: 212 GFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMP 271
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
T T+N +I+ C +G++++A+ LL M G P Y LI+
Sbjct: 272 NTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQ 316
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + R ++D M +G + IL +A ++ +GL+PD
Sbjct: 353 YATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPD 412
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-------- 101
V +Y+ V+ CK+GR + + N+ + G++PN+++ L H + IG
Sbjct: 413 VVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAF 472
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P I N ++ LC G++ +A ++ G P+ Y+TLI
Sbjct: 473 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLI 525
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 31/175 (17%)
Query: 3 CNKNDFFEARKVIDYM-FDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C + EA +++ +M D GY+ PNV +Y+ + +AY + + G
Sbjct: 176 CVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFP 235
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
PDV TY++++DG CK N+ +L ++GV PN T I + +G +
Sbjct: 236 PDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRL 295
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +IQ C +G+ +A + M G+ P+ T+Y L+
Sbjct: 296 LKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 350
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 75/209 (35%), Gaps = 63/209 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+ D + G PNV +Y L E+ + + + GL+PD
Sbjct: 494 CKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDS 553
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNV--------------- 95
+TY A+++G+ K GR + + L E + V +T I LH +
Sbjct: 554 WTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMK 613
Query: 96 -IDIGHIPR-----------------------------------TITFNNVIQALCGVGK 119
+D G R TFN VI AL VG+
Sbjct: 614 MVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGR 673
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
ID+A L M G +P Y +IK
Sbjct: 674 IDEAKSLFSAMVLRGPVPHVITYSLMIKS 702
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA +++ M +G P+V TY +L EA + ++ G KP+
Sbjct: 283 YCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPN 342
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-----TPNVVTLIHL-HNVIDI------ 98
Y ++ G+ G +V +LL+ I G+ N++ + H +D
Sbjct: 343 STIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFT 402
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P ++++ VI LC +G+++ A+ M G P+ + +LI L
Sbjct: 403 EMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGL 458
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNV-----------TTYTILEAYEMLMNVKNDGLKPDV 51
C+ ++ + ++ M + G HP+ ++EA + V + G+KP+V
Sbjct: 459 CSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNV 518
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VIDIGHIPR- 103
+Y ++DG+C VG+ +E ++ + + G+ P+ T L N V D + R
Sbjct: 519 VSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYRE 578
Query: 104 ---------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IT N ++ L G+I A L M + G Y+T++ L
Sbjct: 579 MFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGL 633
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 28/153 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV TY+ L EAY +LM +K + + P Y AV++GF + G+ +E
Sbjct: 138 GCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSEC 197
Query: 71 MELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQA 113
+ELL E+G N++ ++H ++ G P +T+N +
Sbjct: 198 LELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHG 257
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC GK+D+A +L M E P Y ++I
Sbjct: 258 LCKAGKVDEAYRILLEMVESKVTPDVITYSSII 290
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 5 KNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
KND E A + + + +G PNV TY + EAY +L+ + + PDV
Sbjct: 225 KNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVI 284
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNV 95
TY++++DGFCK GR ++ ++ + P+ VT + L ++
Sbjct: 285 TYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDM 344
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G IP T+N ++ +CG ++ AL + M + P Y LI+ L
Sbjct: 345 VNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCL 398
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 21/117 (17%)
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-----------LHNVIDIG 99
YT V++GFCK G+ ++ ELL+E ERGV +V+ TLI L +G
Sbjct: 2 YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61
Query: 100 H--IPRTITFNNVIQALCGVGKIDKALLLLFLM---YE--HGKIPSRTLYDTLIKKL 149
P IT+N V+ LC +ID+ L L M YE HG P Y T+I L
Sbjct: 62 EECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDAL 118
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 40/187 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A +++D M + G +V ++ L EA E ++ + P+
Sbjct: 9 FCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPN 67
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHNVID-------- 97
V TY V++G CK R +E +EL ++ +R G P+V++ VID
Sbjct: 68 VITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISY---STVIDALCKAQRV 124
Query: 98 ------------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+G P +T++++I LC V ++D+A LL + +P Y+ +
Sbjct: 125 DKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAV 184
Query: 146 IKKLDQQ 152
+ +Q
Sbjct: 185 VNGFKRQ 191
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 47/184 (25%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V + M + G+ P + TY +L A E+ +K +PD TY ++
Sbjct: 336 EAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLI 395
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIH----------LHNVIDI--- 98
C+ R +E E L+ V PN V L L NV++I
Sbjct: 396 QCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKA 455
Query: 99 ----------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
G P T+ V+++LCG+ ++D A+ M G P Y
Sbjct: 456 GEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTY 515
Query: 143 DTLI 146
LI
Sbjct: 516 TLLI 519
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EAR V D M G PNV TYT L EA ++L GL PD
Sbjct: 212 YCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPD 271
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
+ T+T ++ G C+ GR +L G TPN++T + L + G++
Sbjct: 272 IVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQ 331
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P + + +I +LC GKI L + + G P+ Y L+ L ++
Sbjct: 332 EMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKE 390
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M G PNV Y+ L EA + + + G P+VYTYT++M
Sbjct: 185 EALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLM 244
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHI 101
+G+CK+ R E ++LL+E + +G+ P++VT + + + GH
Sbjct: 245 NGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHT 304
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ ++ LC G +++A L M P+ +Y LI L
Sbjct: 305 PNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSL 352
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + D M G PNV TY ++ EA L ++ G P+V
Sbjct: 143 CMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNV 202
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
Y+ ++DG+C G+ +E + + + +G TPNV T L N
Sbjct: 203 VNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDE 262
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P +TF +I LC G+ A L + HG P+ Y L+ L
Sbjct: 263 TLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGL 317
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A+++ Y+ +G+ PN+ TY +L EA+ + ++ +KP++
Sbjct: 283 CRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNL 342
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT ++D CK G+ + EL + I+ G+ PNV T+ ++
Sbjct: 343 VIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVY------------------TYTALV 384
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
ALC G I +A L M E G P + Y+ +I+ Q
Sbjct: 385 GALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQH 425
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKP 49
C+C+ + V+ + G P++ T+T L + +M + +D GL+P
Sbjct: 106 CFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQP 165
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI----------HLHNVI 96
+VYTY +++ K G++NE + L + + G PNVV TLI +V
Sbjct: 166 NVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVF 225
Query: 97 DI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D+ G P T+ +++ C + +I++A+ LL G +P + T+I L
Sbjct: 226 DLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGL 282
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C K + +++ + D G PNV TYT I+EA+++ ++ DG P
Sbjct: 353 CKCGK--IKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTP 410
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
D Y ++ GF + + +L+ E + RG + + T
Sbjct: 411 DKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT 449
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++ D+++ + +++ FC + R + + +L++ ++ G+ P++VT
Sbjct: 92 GIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVT----------------- 134
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
F ++ LC GK+D+ ++L M G P+ Y+ +I L +
Sbjct: 135 -FTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKS 180
>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
cujabensis]
Length = 409
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G PD
Sbjct: 148 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPD 207
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + + EL +E + +G+ PN VT L
Sbjct: 208 VYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYK 267
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 268 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLI 320
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 32/156 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 253 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPD 312
Query: 51 VYTYTAVMDGFCKVG--------RSNEVME-----------LLNEAIERGVTPNVVTLIH 91
+TYT ++DG CK G R + E L++ + G + + +
Sbjct: 313 KFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM-- 370
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
L ++ +G P T+ +I C G + K LL
Sbjct: 371 LREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLL 406
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 103 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 154
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 155 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVL 214
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 215 INGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLI 250
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 28/156 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV ++ ++ A E+ + +PDV+TY +MDG CK R +E + L
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229
Query: 74 LNEAIERGVTPNVVT-------------LIHLHNVID----IGHIPRTITFNNVIQALCG 116
L+E G P+ VT ++ + ++D G +P +T+N +I LC
Sbjct: 230 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCL 289
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
GK+DKA+ LL M +P+ Y TLI L +Q
Sbjct: 290 KGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQ 325
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
+ G+H N Y+ L EA + + G +P++ Y+A++DG C+ G+ +
Sbjct: 340 ERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLD 399
Query: 69 EVMELLNEAIERGVTPNVVTLIHL-HNVIDIGH----------------IPRTITFNNVI 111
E E+L E + +G TPN T L G+ +P I ++ +I
Sbjct: 400 EAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLI 459
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK+ +A+++ M G P Y ++I L
Sbjct: 460 HGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 497
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D K++D MF G PN TY + +A +L + P+
Sbjct: 253 CKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPND 312
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LHN 94
TY +++G K GRS + + LL+ ERG N TLI
Sbjct: 313 VTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKK 372
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G P + ++ +I LC GK+D+A +L M G P+ Y +LIK
Sbjct: 373 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIK 425
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA++++ M + G PN TY+ L +A + + + P+
Sbjct: 393 CREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNE 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
Y+ ++ G C+ G+ E M + + RG+ P+VV + H + + G +
Sbjct: 453 ICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNE 512
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+N +++ALC I A+ LL M + G P + + L ++
Sbjct: 513 MLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREK 572
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE YE + K + + P+V ++ V+ CK+G + +E+ E + P+V T L
Sbjct: 155 LEFYECGVGGKTN-ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTL 213
Query: 93 ------HNVID-----------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ ID G P ++TFN +I LC G + + L+ M+ G
Sbjct: 214 MDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGC 273
Query: 136 IPSRTLYDTLIKKL 149
+P+ Y+T+I L
Sbjct: 274 VPNEVTYNTIINGL 287
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TY L EA +L ++ +G P T+ +++G CK G V +L
Sbjct: 205 PDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKL 264
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
++ +G PN VT +I+ L ++ +P +T+ +I L
Sbjct: 265 VDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVK 324
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ + LL + E G + Y TLI L
Sbjct: 325 QGRSVDGVHLLSSLEERGHHANEYAYSTLISGL 357
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 28/156 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV T+ ++ +A +M ++ +PDVYTY +MDG CK R +E + L
Sbjct: 167 PNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSL 226
Query: 74 LNEAIERGVTPNVVT-------------LIHLHNVID----IGHIPRTITFNNVIQALCG 116
L+E G P+ VT L + ++D G P +T+N +I LC
Sbjct: 227 LDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCL 286
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
GK++KA+ LL M +P+ Y T+I L +Q
Sbjct: 287 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQ 322
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
+ +V+ M + GYH N Y+ L EA ++ + + + Y+AV
Sbjct: 326 LDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAV 385
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDIGH------- 100
+DG C+ G+ +E +E+L+E PN T L H I++
Sbjct: 386 IDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNF 445
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ ++ +I LC GK+ +A+++ M G P Y ++I L
Sbjct: 446 TQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLS 495
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D K++D MF G PN TY L +A +L + + P+V
Sbjct: 250 CKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNV 309
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN----------------VVTLIHLHNV 95
TY +++G K GR+ + +L ERG N + L
Sbjct: 310 VTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKE 369
Query: 96 IDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ + TI ++ VI LC GK D+AL +L M + P+ Y +L+K
Sbjct: 370 MTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMK 422
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 34/182 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +V+ M +N PN TY+ L +A EM ++ +
Sbjct: 390 CRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNE 449
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
Y+ ++ G CK G+ E M + + + +G P+VV + L+N
Sbjct: 450 VCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNE 509
Query: 96 I---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT----LYDTLIKK 148
+ + P +T+N ++ ALC I +A+ LL M + G P TL +K
Sbjct: 510 MLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREK 569
Query: 149 LD 150
LD
Sbjct: 570 LD 571
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 28/154 (18%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
P+V TY L EA +L ++ DG P T+ +++G CK G V +
Sbjct: 201 QPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAK 260
Query: 73 LLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALC 115
L++ +G PN VT LIH L ++ +P +T+ +I L
Sbjct: 261 LVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLV 320
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ +L LM E G + +Y LI L
Sbjct: 321 KQGRALDGARVLALMEERGYHVNEYVYSALISGL 354
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT- 88
Y LE Y ++ K + P+V T+ V+ CKVG ++ +++ + P+V T
Sbjct: 148 YRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTY 207
Query: 89 ---------------LIHLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+ L + + I G P +TFN +I LC G + + L+ M+
Sbjct: 208 CTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFL 267
Query: 133 HGKIPSRTLYDTLIKKL 149
G P+ Y+TLI L
Sbjct: 268 KGCAPNEVTYNTLIHGL 284
>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
diamantinensis]
Length = 284
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 97 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPD 156
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VY+Y+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 157 VYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYK 216
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 217 RMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLI 269
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K A ++ M P++ TY L +A +++ + GLKPD
Sbjct: 202 HCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPD 261
Query: 51 VYTYTAVMDGFCKVGRSNEVME 72
TYT ++DG CK G + E
Sbjct: 262 KITYTTLIDGCCKEGNLDTAFE 283
>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Brachypodium distachyon]
Length = 476
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A+++ M NG P V TYT + +A +M + G+ P+V
Sbjct: 205 CRRSRRADAQEIFSEMVANGVAPTVVTYTTVINWLARDGCLDDALKMFDEMGRIGIAPNV 264
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY++++DG CK GR+ +ELL+ + PN TIT+++VI
Sbjct: 265 VTYSSLIDGLCKGGRAASALELLDRMAKEAKLPN------------------TITYSSVI 306
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC ++++A+ +L M G+ P L+ LI L
Sbjct: 307 NGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGL 344
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
A ++ M G+ P TY +L +A + N+ KPD +Y V
Sbjct: 145 AHSLLADMRAGGFAPTTATYNVLLKAHCSDASAPIEDAVRLFRNIP----KPDACSYNTV 200
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGH 100
+DG C+ R + E+ +E + GV P VVT + N + IG
Sbjct: 201 IDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTVINWLARDGCLDDALKMFDEMGRIGI 260
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T++++I LC G+ AL LL M + K+P+ Y ++I L
Sbjct: 261 APNVVTYSSLIDGLCKGGRAASALELLDRMAKEAKLPNTITYSSVINGL 309
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++D M PN TY+ + EA E+L ++ G KPD
Sbjct: 275 CKGGRAASALELLDRMAKEAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDA 334
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ ++ G C GR+ E L+E + GV PN VT LH I+ + V+
Sbjct: 335 GLFGKLIVGLCGAGRAVEAANYLDEMVLSGVEPNRVTW-SLHVRIN----------DAVV 383
Query: 112 QALCGVGK 119
ALC G+
Sbjct: 384 TALCAKGE 391
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A +++ M +G P+ TYT L A EM + ++G+ D
Sbjct: 264 FCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 323
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLH 93
TYTA++ G K GRS + +L E +E G+ P+ T HL
Sbjct: 324 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 383
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P +T+N V+ C +G++ A +LL M G P+ Y+ L+
Sbjct: 384 EMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILL 436
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR V D M G P V T+ L A + + G+ PDVYTY A +
Sbjct: 133 ARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQ 192
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------NVIDIGHIP 102
G CK GR + ME+ E ERG+ PN V TLI H + G
Sbjct: 193 GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKA 252
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +N ++ C V + A ++ M + G P + Y TLI
Sbjct: 253 DLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLI 296
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++ M + G P+ TTYT++ ++ L ++N G P + TY VM
Sbjct: 342 DAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVM 401
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
+GFC +G+ LLN + GV PN +T +N++ GH
Sbjct: 402 NGFCSLGQMKNADMLLNAMLNIGVCPNDIT----YNILLDGH 439
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
++ EAY +++ + G+ P+ + +M + G+ + +E + RGV P VVT
Sbjct: 94 SVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFN 153
Query: 91 HLHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L + + G P T+ IQ LC G+I A+ + M E
Sbjct: 154 TLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCER 213
Query: 134 GKIPSRTLYDTLI 146
G P+ + TLI
Sbjct: 214 GLNPNTVVLTTLI 226
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMNVK-NDGLKPD 50
+C D K + M + G +P + TY + ++ +ML+N N G+ P+
Sbjct: 369 FCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPN 428
Query: 51 VYTYTAVMDGFCKVGRSNEVMEL 73
TY ++DG CK G+ + EL
Sbjct: 429 DITYNILLDGHCKHGKVRDTEEL 451
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A ++ M G P+V Y L A E++ ++ +KPD
Sbjct: 338 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY+ ++ G+CKVG + +L + +++GV P+ +T L
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFE 457
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
N++ +G P T+ +I C G ++KAL L M G +P Y LI L +
Sbjct: 458 NMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 515
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C + A +V+ M + G PN+ T+ + A ++ + +GL P
Sbjct: 197 FCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP 256
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT---- 104
DV +Y ++ G+CKVG +E + + +E +RG+ P+VVT L H G++ +
Sbjct: 257 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 316
Query: 105 ------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+TF +I C G +D ALL + M + G PS Y+ LI
Sbjct: 317 AQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALI 370
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M G P+ TY+ L +A E+ N+ G++PD
Sbjct: 408 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYT ++DG CK G + + L +E I +GV P+VV T++ +
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV------------------TYSVL 509
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L + +A LLF +Y +P YD L+
Sbjct: 510 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC E+ V M G P+V T+T L +A ++ ++ GL+ +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI-------- 101
T+TA++DGFCK G ++ + + E + G+ P+VV L N +G +
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T++ +I C VG +D A L M + G +P Y +LI+ L ++
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE 446
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 31/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKP 49
C + EA V+ M G PN TY L E LM + + KP
Sbjct: 163 CARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNA-KP 221
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI- 98
++ T+ ++++G CK GR ++ +E + G+ P+VV TL+ LH + +
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVF 281
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P +TF ++I A C G +++A+ L+ M E G + + LI
Sbjct: 282 SEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+ + M +G PNV TY IL EA ++ +++ G P+ TY ++
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVA 195
Query: 60 GFCKVGR---SNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIG 99
FC+ G + V+ L+ E E PN+VT + N ++ G
Sbjct: 196 AFCRAGELDGAERVVSLMRE--EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREG 253
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +++N ++ C VG + ++L + M + G +P + +LI
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 300
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 28/153 (18%)
Query: 22 GYHPNVTTY----------TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
GY P+V Y ++ A L ++ G+ P+VYTY ++ C GR E +
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172
Query: 72 ELLNEAIERGVTPNVVTLIHL-------------HNVIDI-----GHIPRTITFNNVIQA 113
++ + G PN VT L V+ + P +TFN+++
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNG 232
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G+++ A + M G P Y+TL+
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 265
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + F EA + M + G P+ TY T++ Y ++ + +G PD
Sbjct: 297 CKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQ 356
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+TY +++DG C G +N + L NEA+ +G+ PNV+ TLI +
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANE 416
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G IP TFN ++ LC +G + A L+ +M G P ++ LI Q
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQ 474
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ M GY P++ T+ IL A E+L + ++G+ PDV
Sbjct: 437 CKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDV 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY ++++G CK + +VME +E+G PN+ TFN ++
Sbjct: 497 YTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNL------------------FTFNILL 538
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++LC K+D+AL LL M P + TLI
Sbjct: 539 ESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLI 573
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D E K++D + G PN+ TY + A M+ + G KPDV
Sbjct: 227 CKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDV 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------LIHLH-----N 94
TY ++ G CK + E L + + G+ P+ T ++ L +
Sbjct: 287 ITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGD 346
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G +P T+ ++I LC G+ ++AL L G P+ LY+TLIK L Q
Sbjct: 347 AVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQ 404
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C++ + A + + G PNV Y ILEA ++ + GL P+V
Sbjct: 367 CHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEV 426
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI--- 98
T+ +++G CK+G ++ L+ I +G P++ T LIH + N ++I
Sbjct: 427 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 486
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+N+++ LC K + + M E G P+ ++ L++ L
Sbjct: 487 MLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
F ++ + D+GY +A+++ M +++ G+ PDVY++T M FCK R +
Sbjct: 112 FSYNAIMSVLVDSGYFD--------QAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPH 163
Query: 69 EVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVI 111
+ LLN +G NVV + ++ G TFN ++
Sbjct: 164 AALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLL 223
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ LC G + + LL + + G +P+ Y+ I+ L Q+
Sbjct: 224 RVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQR 264
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F +A KV M D G P+V ++TI A +L N+ + G + +V Y
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCT 186
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIG 99
V+ GF + E EL + + GV+ + T L VI G
Sbjct: 187 VVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG 246
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P T+N IQ LC G++D A+ ++ + E G P Y+ LI L
Sbjct: 247 VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGL 296
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F + + M + G PN+ T+ IL EA +L +KN + PD
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE----RGVTPNVVTLIH--------------LH 93
T+ ++DGFCK G + L + E TP +IH
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQ 626
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D P T+ ++ C G ++ L M E+G IPS T +I
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVI 679
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + A ++ + + L PD YTY ++DGFCK G N + L E +E G
Sbjct: 610 HAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFI 669
Query: 84 PNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
P++ TL VI LC ++ +A ++ M + G +P
Sbjct: 670 PSLTTL------------------GRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + EA+ +++ M D G P+ TT+ L EA ++ + GL P
Sbjct: 344 CLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSP 403
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI- 98
DVYT+ +++ CKVG + + L E G P+ VT + L N +D+
Sbjct: 404 DVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLL 463
Query: 99 -----GHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
PR T+T+N +I ALC +I++A + M HG S ++TLI L
Sbjct: 464 KEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGL 520
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C A KV+D M G+ P+V TY + EA ++ + + G P
Sbjct: 309 CLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLP 368
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI------------- 96
D T+ ++ C R E ++L E +G++P+V T L N +
Sbjct: 369 DTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLF 428
Query: 97 ----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P +T+N +I LC +GK+ AL LL M +G S Y+T+I L +Q
Sbjct: 429 EEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQ 488
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKPDV 51
C + A +++ M + P+ TT+T L + E + VK G P
Sbjct: 206 CRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTR 265
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T +++G+CK+GR + + + + I G P+ VT + H V+D+
Sbjct: 266 VTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDL 325
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
GH P T+N VI L G++D+A ++ M + G +P T ++TLI L Q
Sbjct: 326 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQ 383
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ A ++ M NG + TY I EA E+ + G+
Sbjct: 451 CSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSA 510
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIH------LHNVIDI--- 98
T+ ++DG CK R ++ EL+ + ++ G+ P+ +T L H L DI
Sbjct: 511 VTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILET 570
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +T+ +I LC G+ AL LL M G P+ Y+ +I+ L
Sbjct: 571 MTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 625
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 42/166 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + D +A +++ M NG+ DV TY +++G
Sbjct: 555 YCKQGDLKKAADILETMTANGFEI------------------------DVVTYGTLINGL 590
Query: 62 CKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVID----------IGHIPRT 104
CK GR+ ++LL +G+ P + +L +N+ D +G P
Sbjct: 591 CKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDA 650
Query: 105 ITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ V + LC G G I +A L M G +P + + L + L
Sbjct: 651 LTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 696
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++ D Y +++ + R + + NE +RG+ P+VVTL
Sbjct: 155 GVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTL---------------- 198
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
N +I+ALC ++ A+L+L M H P T + TL++
Sbjct: 199 --NTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQ 238
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C +A ++++ M + G P+ T+ IL +E+L ++ DG+ P+
Sbjct: 262 CRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 321
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----VIDIGHI----- 101
V T+T+V+ G+CK G+ + M + N+ + G+ PN VT L N V D+G
Sbjct: 322 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 381
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+++I C G++D AL + M +H P+ + +I L +Q
Sbjct: 382 QMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQ 440
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
YC +A V + M +G PN TY +L E Y+ + ++
Sbjct: 332 YCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLR---C 388
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVID-------IG 99
PDV T+++++DG+C+ G+ ++ + + ++ + + PNV T I +H++ IG
Sbjct: 389 PPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIG 448
Query: 100 HI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ P+ +N VI LC GK+D+A L+ M E G P + Y LI
Sbjct: 449 LLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILI 505
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 26/120 (21%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV----------IDI 98
PDV+++ V+ G C+VG+ + +EL+ E G +P+ VT HN+ +
Sbjct: 249 PDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT----HNILVDGLCRTNEVSR 304
Query: 99 GH------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GH +P +TF +VI C GK++ A+ + M G +P+ Y+ LI
Sbjct: 305 GHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLI 364
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNV----------TTYTILEAYEMLMNVKND-GLKPD 50
C +A ++ D M + GY P+ T +L+A L++ ++ G + +
Sbjct: 155 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVE 214
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y Y +M GR ++V+ L I+ V + P +FN V
Sbjct: 215 AYAYNKLMSSLIGRGRVHDVVALFERWIQDRV-----------------YSPDVWSFNVV 257
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ +C VG++ KAL L+ M E G P ++ L+ L
Sbjct: 258 IKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGL 296
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA + ++ G +PD YTYT ++ G+C R +E + +E +E G +P+ +T+
Sbjct: 481 EANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITV 536
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + ++ G++PD
Sbjct: 146 FCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
VYTY+ +++G CK + ++ EL +E ++ G+ PN V TLI H
Sbjct: 206 VYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLI 318
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A+ +I+ M G P+ TYT L A+E + + ++ D
Sbjct: 287 CKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P +IG T+ +I
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------------EIG------TYTMII 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C G + L+ M G +PS
Sbjct: 389 NEFCKKGDVWTGSKLMKEMQRDGYVPS 415
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
++A +ML + + GLKP++ TYT +++ FCK G +L+ E G P+VVT
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE + G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGF-----YEESLEC---GYPASLYFFNILMHSFCKEGEI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 153 RLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M ++G +P+ + TLI
Sbjct: 213 INGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLI 248
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + ++D M NG PN + I+ EA + + GL PD
Sbjct: 419 YAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPD 478
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++D CK+GR ++ + N+ I GVTPN ++ FN++
Sbjct: 479 VVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPN------------------SVVFNSL 520
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC V + +KA L F M++ G P+ ++T++ L
Sbjct: 521 VYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNL 559
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ A+++ID M G PNV +Y L EA ++L + + GLKPD+
Sbjct: 560 CNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDL 619
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLH----------N 94
+Y ++ G+CK GR + L E + +GVTP VT L H N
Sbjct: 620 ISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLN 679
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
+I G T+N ++ LC +D+A
Sbjct: 680 MIKSGQQWDIYTYNIILNGLCKTNCVDEAF 709
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA + M +G P+V TY IL +A + NDG+ P+
Sbjct: 454 YAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPN 513
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------------TLIHLHNVID 97
+ +++ G C V R + EL E ++GV PNVV ++ +ID
Sbjct: 514 SVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLID 573
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+G P I++N +I C G+ D+A LL +M G P YDTL++
Sbjct: 574 SMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLR 627
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + + +A ++ M+D G PNV + ++ A ++ +++ G++P+V
Sbjct: 525 CTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNV 584
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y ++ G C GR++E +LL+ + G+ P++ I+++ ++
Sbjct: 585 ISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDL------------------ISYDTLL 626
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C G+ID A L M G P Y T+++ L
Sbjct: 627 RGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGL 664
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 32/161 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNG---YHPNVTTY-TILE----------AYEMLMNVKNDGLK 48
CN+ EA +++ M ++G PNV TY TI++ A +L ++ + G+K
Sbjct: 172 CNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVK 231
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
DV TY+ ++DG CK + +L I++GV P+VVT +N
Sbjct: 232 LDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVT------------------YN 273
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC +D+A +L M + G P Y+T+I L
Sbjct: 274 TIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGL 314
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A V+ +M D G +V TY+ + A +L ++ + G+KPDV
Sbjct: 210 CKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDV 269
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++DG CK + +L I++GV P+VV T+N +I
Sbjct: 270 VTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVV------------------TYNTII 311
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC +D+A +L M + P Y+ LI
Sbjct: 312 DGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLI 346
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + ++ E + ++ M+ G P+V TY++L EA ++ + G+KP+
Sbjct: 349 YLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPN 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN----------------VVTLIHLHN 94
V Y ++ G+ G ++ +LL+ + G++PN + +H+ +
Sbjct: 409 VTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFS 468
Query: 95 VIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+ +I ALC +G++D A+L M G P+ ++++L+ L
Sbjct: 469 RMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGL 524
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C A V+ +M D G P+V TY TI++ A +L ++ + +KPD+
Sbjct: 280 CKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDI 339
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ G+ G EV+ L E RG+ P+VV T++ ++
Sbjct: 340 QTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVV------------------TYSLLL 381
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC GK +A + + M G P+ T+Y L+
Sbjct: 382 DYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILL 416
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A + M G P TY+ + EA E+ +N+ G + D
Sbjct: 629 YCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWD 688
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------DI-- 98
+YTY +++G CK +E ++ + + PN++T + +V+ D+
Sbjct: 689 IYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFA 748
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P +T+ +++ + G +D+ L M + G P + + +I+ L
Sbjct: 749 SIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSL 804
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 34 EAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG---VTPNVV-- 87
EA ++L+ + G P+V + ++ G C R E +ELL+ E G TPNVV
Sbjct: 143 EAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTY 202
Query: 88 -TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
T+I L ++ID G +T++ +I LC +D+A +L M +
Sbjct: 203 NTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMID 262
Query: 133 HGKIPSRTLYDTLIKKL 149
G P Y+T+I L
Sbjct: 263 KGVKPDVVTYNTIIDGL 279
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 28 TTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
T+ + + + ++ ++PD+ TY+ + FC++GR ++ G N V
Sbjct: 67 TSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEV 126
Query: 88 TL------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
+ I L + + G +P ++ N +++ LC ++++AL LL
Sbjct: 127 VINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHT 186
Query: 130 MYEHGK---IPSRTLYDTLIKKL 149
M E G P+ Y+T+I L
Sbjct: 187 MAEDGGGNCTPNVVTYNTIIDGL 209
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C +A ++++ M + G P+ T+ IL +E+L ++ DG+ P+
Sbjct: 93 CRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 152
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----VIDIGHI----- 101
V T+T+V+ G+CK G+ + M + N+ + G+ PN VT L N V D+G
Sbjct: 153 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 212
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+++I C G++D AL + M +H P+ + +I L +Q
Sbjct: 213 QMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQ 271
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A V + M +G PN TY +L A E+ + PD
Sbjct: 163 YCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPD 222
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVID-------IGHI- 101
V T+++++DG+C+ G+ ++ + + ++ + + PNV T I +H++ IG +
Sbjct: 223 VVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLN 282
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P+ +N VI LC GK+D+A L+ M E G P + Y LI
Sbjct: 283 ELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILI 336
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 26/121 (21%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV----------ID 97
PDV+++ V+ G C+VG+ + +EL+ E G +P+ VT HN+ +
Sbjct: 79 SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT----HNILVDGLCRTNEVS 134
Query: 98 IGH------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
GH +P +TF +VI C GK++ A+ + M G +P+ Y+ L
Sbjct: 135 RGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVL 194
Query: 146 I 146
I
Sbjct: 195 I 195
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 28/139 (20%)
Query: 22 GYHPNV----------TTYTILEAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEV 70
GY P+ T +L+A L++ ++ G + + Y Y +M GR ++V
Sbjct: 6 GYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDV 65
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+ L I+ D + P +FN VI+ +C VG++ KAL L+ M
Sbjct: 66 VALFERWIQ-----------------DRVYSPDVWSFNVVIKGVCRVGQVQKALELVERM 108
Query: 131 YEHGKIPSRTLYDTLIKKL 149
E G P ++ L+ L
Sbjct: 109 NEFGCSPDTVTHNILVDGL 127
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA + ++ G +PD YTYT ++ G+C R +E + +E +E G +P+ +T+
Sbjct: 312 EANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITV 367
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 28/153 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V+D MF +G P+V TYT L EA ++ + + G P+V
Sbjct: 295 CKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNV 354
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
++Y +++G+CK+ R ++ M L E + + PN VT LIH
Sbjct: 355 FSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFRE 414
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ G IP +T+ ++ LC +DKA+ LL
Sbjct: 415 MVACGQIPDLVTYRILLDYLCKNCHLDKAMALL 447
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN ++ +++ M D+ PN + T + +A++++ + G++PDV
Sbjct: 260 CNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDV 319
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNVIDIGH-------- 100
TYTA++DG C +E +++ + + +G PNV TLI+ + I+
Sbjct: 320 VTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEE 379
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IP T+T+N +I LC VG++ A+ L M G+IP Y L+ L
Sbjct: 380 MCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYL 434
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + D M G+ P+V Y L A +L +++ +PDV
Sbjct: 155 CLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDV 214
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y ++ CK + + L +E I +G++PN+VT L++ L+
Sbjct: 215 VVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNE 274
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D +P I+ V+ ALC G + +A ++ +M++ G P Y LI
Sbjct: 275 MVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALI 326
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M G P++ TY IL +A +L ++ L PD+
Sbjct: 400 CHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDI 459
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT V+DG C+ G + +L + +G+ PNV T+N +
Sbjct: 460 QIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNV------------------WTYNIMT 501
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G +D+A L M E+ Y+T+ +
Sbjct: 502 HGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQ 537
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+ +L + G +PD ++T ++ G C G+ E + L ++ I G P+VV
Sbjct: 128 AFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVV------- 180
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL--DQQ 152
+ +I LC G A+ LL M + P +Y TLI L D+Q
Sbjct: 181 -----------IYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQ 229
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR + + G PNV TY I+ EA ++ M + + D
Sbjct: 470 CRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADG 529
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + GF + ++ ++LL E + RG + +V T
Sbjct: 530 CTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVST 566
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 27 VTTYTILEAYEMLMNVKND----GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+T+ T ++ Y ++++ G+ +VYT +++ FC + R N +L + ++ G
Sbjct: 81 LTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGC 140
Query: 83 TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P+ T +F +I+ LC G+I +AL L M G P +Y
Sbjct: 141 QPD------------------TASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIY 182
Query: 143 DTLIKKL 149
TLI L
Sbjct: 183 ATLINGL 189
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F AR M NG TYT + EA +L + DG+ PD+
Sbjct: 379 CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI--- 98
TY+A+++GFCKVGR E++ G++PN + TLI+ L I I
Sbjct: 439 VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 498
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GH TFN ++ +LC GK+ +A + M G +P+ +D LI
Sbjct: 499 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + F ++ ++ M +GY P + TY T+L Y E+L ++K+ G+ DV
Sbjct: 204 CAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADV 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY ++ C+ R + LL + +R + PN V TLI+ L+
Sbjct: 264 CTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNE 323
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +TFN +I G +AL + ++M G PS Y L+ L
Sbjct: 324 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V T+ IL ++ ++ ++ G P + TY V+ +CK GR +EL
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250
Query: 74 LNEAIERGVTPNVVT---LIH---LHNVIDIGHI-----------PRTITFNNVIQALCG 116
L+ +GV +V T LIH N I G++ P +T+N +I
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK+ A LL M G P+ ++ LI
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G P VYT A++ K G V L E ++R + P+V T L NV+
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G+ P +T+N V+ C G+ A+ LL M G Y+ LI
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272
Query: 149 L 149
L
Sbjct: 273 L 273
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTL----------------IH 91
PD YTYT+++ G C+ G++ + EA RG V PN V I+
Sbjct: 646 PDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIY 705
Query: 92 LHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D +GH P +T N +I +GKI+K LL M P+ T Y+ L+
Sbjct: 706 FREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILL 761
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C F A++++ ++ G PN Y+ L EA + + +G D
Sbjct: 448 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+T+ ++ CK G+ E E + G+ PN V+ L N
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +GH P T+ ++++ LC G + +A L ++ +Y+TL+ +
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 623
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N+ A ++++ M G PN T+ L EA +M ++ GL P
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+Y ++DG CK + GV +T ++ L+
Sbjct: 368 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLN 427
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T++ +I C VG+ A ++ +Y G P+ +Y TLI
Sbjct: 428 EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E+ +L + G+ P+ Y +++G C+VG + E I + P
Sbjct: 877 ESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICP--------P 928
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
NV + + +++AL GK D+A LLL M + +P+ + TL+
Sbjct: 929 NVAE----------SAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 971
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K D EA ++ +M P + ++T ++EA E+ + + N GLK D+
Sbjct: 942 CGKAD--EATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 999
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y ++ G C G EL E G N T + + G + R F+
Sbjct: 1000 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATT----YKALIRGLLARETAFSGA 1054
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 28/156 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV ++ ++ A E+ + PD YTY +MDG CKV R +E + L
Sbjct: 179 PNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
L+E G P+ T LI+ + N+ G +P +T+N +I LC
Sbjct: 239 LDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 298
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
GK+DKAL LL M +P+ Y T+I L +Q
Sbjct: 299 KGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQ 334
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
+ +V+ M + GY N Y++L EA + + G K + Y+A+
Sbjct: 338 LDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSAL 397
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVID-------IGH 100
+DG C+ + +E M++L+E ++G PN T L H I+ I
Sbjct: 398 VDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINC 457
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++ +I LC GK+ +A+++ M G P Y ++I+ L
Sbjct: 458 AENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGL 506
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
I EA +L ++ +G P T+ +++G CK G V +L++ +G PN VT
Sbjct: 232 IDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNT 291
Query: 89 LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LIH L ++ +P +T+ +I L G+ +L LM E G
Sbjct: 292 LIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERG 351
Query: 135 KIPSRTLYDTLIKKL 149
I + +Y L+ L
Sbjct: 352 YIVNEYVYSVLVSGL 366
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K DF K++D MF G PN TY L +A +L + + P+
Sbjct: 262 CKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNE 321
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIH----------LHN 94
TY +++G K GR+ + +L ERG N V L
Sbjct: 322 VTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKE 381
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+D G T+ ++ ++ LC K D+A+ +L M + G P+ + +L+K
Sbjct: 382 SMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMK 434
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K++ M D G PN T++ L +A E+ ++ + Y+ ++
Sbjct: 409 EAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLI 468
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI---------------- 101
G CK G+ E M + + + G P+VV + + D G +
Sbjct: 469 HGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPD 528
Query: 102 --PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P IT+N + ALC I +A+ LL M + G P + ++ L ++
Sbjct: 529 SQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREK 581
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT--------------ILEAYEMLMNVKNDGLK 48
C EA V M G P+V Y+ L+ Y ++ ++ D +
Sbjct: 472 CKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDS-Q 530
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
PDV TY + + CK + ++LLN ++RG P++VT
Sbjct: 531 PDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVT 570
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
KP V ++ +V++ + G + +E N H+ D+ +P ++F
Sbjct: 140 KPTVKSFNSVLNVIIQAGFHDRALEFYN---------------HVVGAKDMNILPNVLSF 184
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N +I+++C +G +D A+ L M +P Y TL+ L
Sbjct: 185 NLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGL 226
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A + ++ M P V TY + EAY + K+ G++ +
Sbjct: 104 FCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELN 163
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V Y++++DGF KVGR +E +L E +++G+ PNV T LI
Sbjct: 164 VIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQ 223
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ ++ P T T++ +I LC V K +KA + M + G +P+ Y T+I L +
Sbjct: 224 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAK 281
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C D + R + + + G+ P+V +Y+IL E + +K G
Sbjct: 33 CVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFAL 92
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR----- 103
D Y AV+DGFCK G+ ++ E L E + V P V T ++ID + I R
Sbjct: 93 DARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVAT---YGSIIDGLAKIDRLDEAY 149
Query: 104 --------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I ++++I VG+ID+A L+L M + G P+ +++L+ L
Sbjct: 150 MLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDAL 209
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M G PNV T+ L EA ++K P+ YTY+ ++
Sbjct: 182 EAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILI 241
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G C+V + N+ E ++G+ PNVVT + +I L VG
Sbjct: 242 NGLCRVQKYNKAFVFWQEMQKQGLVPNVVT------------------YTTMISGLAKVG 283
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I A L +G IP ++ LI+ +
Sbjct: 284 NITDACSLFERFKANGGIPDAASFNALIEGMSH 316
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN TY+IL +A+ ++ GL P+V TYT ++ G KVG + L
Sbjct: 232 PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSL 291
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
G P+ + L + + H R I +V +
Sbjct: 292 FERFKANGGIPDAASFNAL--IEGMSHANRAIEAYHVFE 328
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EAR + D M +G P+ TYT+ AY + +G++P+
Sbjct: 557 HCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPN 616
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ C++GR+N + +E +ERG++PN T+ +
Sbjct: 617 EVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPN------------------KYTYTLL 658
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I C G ++A+ L M++HG P ++ L K D+
Sbjct: 659 IDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDE 699
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + M G + TY I +AY + M + +DGL+PD TYT ++
Sbjct: 495 EAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLI 554
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
C+ GR E ++ + + G+ P+ VT IH +++ G
Sbjct: 555 HAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVR 614
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N +I ALC +G+ + A M E G P++ Y LI
Sbjct: 615 PNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLI 659
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D EAR+ M + G P+V+TYTIL E + + GL+PD
Sbjct: 417 YCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPD 476
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ Y + +G ++E +L I RG++ + T+T+N
Sbjct: 477 CFAYNTRISAELILGSTSEAFQLTEVMISRGISSD------------------TVTYNIF 518
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ LC G + A +L M G P Y LI
Sbjct: 519 LDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLI 554
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + + A M + G PN TY +L AY+ + GL P+
Sbjct: 592 YCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPN 651
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF-NN 109
YTYT ++DG CK G E + L +E + G+ P+ T L D G I + N
Sbjct: 652 KYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQYMEN 711
Query: 110 VI 111
V+
Sbjct: 712 VV 713
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P++ TY L EA + ++K GL P V TY ++DG+C++G E
Sbjct: 367 GLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEA 426
Query: 71 MELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQA 113
E +E+G P+V T L N ++ G P +N I A
Sbjct: 427 RRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISA 486
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G +A L +M G Y+ + L
Sbjct: 487 ELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGL 522
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER--GVTPNVVTL-IHLHNVIDIGHIP 102
G++P + TY ++D F + GR ++ +LL E R G P+ VT + ++ + G +
Sbjct: 226 GIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELE 285
Query: 103 R---------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ TFN +I G ++KA L M G +P+ Y+T+I
Sbjct: 286 KAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTII 344
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 23 YHPNVTTY----TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78
++P +T Y ++ +A + + ++N+G+ P V TY ++ G + G E
Sbjct: 305 FNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMR 364
Query: 79 ERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
G+ P++ IT+N++I C G + +AL L + G PS
Sbjct: 365 AMGLLPDL------------------ITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPS 406
Query: 139 RTLYDTLI 146
Y+ L+
Sbjct: 407 VLTYNILL 414
>gi|413944087|gb|AFW76736.1| hypothetical protein ZEAMMB73_938811 [Zea mays]
Length = 496
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D AR V + M ++G P+ +YT L E +++ +K G + D
Sbjct: 301 HCKKADIEAARSVFEEMRNSGVEPDAVSYTALIGCLCRHGSVDEGIGLVLEMKEKGCRAD 360
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIPRTITF-- 107
V TY V++G CK GR+ E M LL GV NV + L N + G + R +
Sbjct: 361 VVTYNLVIEGLCKDGRTVEAMGLLESVPLEGVKLNVASYRILMNCLCSRGEMDRAVGLLG 420
Query: 108 --------------NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
NN++ LC G+I A + L+ + + G +P ++ L++ +
Sbjct: 421 LMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLADAGFMPEPRCWERLVESV 476
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 32/180 (17%)
Query: 2 YCNKNDFFEARKVIDYMFD---NGYHPNVTTYTIL-----------EAYEMLMN-VKNDG 46
Y + A KV+D M + PN+ TY+ L EA+E+ ++ D
Sbjct: 192 YVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKEAFELFEEMIEKDR 251
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH---------- 93
+ PD Y ++DGFC+ G+ ++ + + PN TLI+ H
Sbjct: 252 IVPDQLLYNVIIDGFCRQGQVDKARAIFGFMRKNECEPNTFNYATLINGHCKKADIEAAR 311
Query: 94 ----NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P +++ +I LC G +D+ + L+ M E G Y+ +I+ L
Sbjct: 312 SVFEEMRNSGVEPDAVSYTALIGCLCRHGSVDEGIGLVLEMKEKGCRADVVTYNLVIEGL 371
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F AR M NG TYT + EA +L + DG+ PD+
Sbjct: 419 CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 478
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI--- 98
TY+A+++GFCKVGR E++ G++PN + TLI+ L I I
Sbjct: 479 VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 538
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GH TFN ++ +LC GK+ +A + M G +P+ +D LI
Sbjct: 539 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 590
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + F ++ ++ M +GY P + TY T+L Y E+L ++K+ G+ DV
Sbjct: 244 CAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADV 303
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY ++ C+ R + LL + +R + PN V TLI+ L+
Sbjct: 304 CTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNE 363
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +TFN +I G +AL + ++M G PS Y L+ L
Sbjct: 364 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 418
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V T+ IL ++ ++ ++ G P + TY V+ +CK GR +EL
Sbjct: 231 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 290
Query: 74 LNEAIERGVTPNVVT---LIH---LHNVIDIGHI-----------PRTITFNNVIQALCG 116
L+ +GV +V T LIH N I G++ P +T+N +I
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 350
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK+ A LL M G P+ ++ LI
Sbjct: 351 EGKVLIASQLLNEMLSFGLSPNHVTFNALI 380
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G P VYT A++ K G V L E ++R + P+V T L NV+
Sbjct: 193 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 252
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G+ P +T+N V+ C G+ A+ LL M G Y+ LI
Sbjct: 253 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 312
Query: 149 L 149
L
Sbjct: 313 L 313
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTL----------------IH 91
PD YTYT+++ G C+ G++ + EA RG V PN V I+
Sbjct: 686 PDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIY 745
Query: 92 LHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D +GH P +T N +I +GKI+K LL M P+ T Y+ L+
Sbjct: 746 FREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILL 801
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C F A++++ ++ G PN Y+ L EA + + +G D
Sbjct: 488 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 547
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+T+ ++ CK G+ E E + G+ PN V+ L N
Sbjct: 548 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 607
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +GH P T+ ++++ LC G + +A L ++ +Y+TL+ +
Sbjct: 608 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 663
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N+ A ++++ M G PN T+ L EA +M ++ GL P
Sbjct: 348 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 407
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+Y ++DG CK + GV +T ++ L+
Sbjct: 408 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLN 467
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T++ +I C VG+ A ++ +Y G P+ +Y TLI
Sbjct: 468 EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 520
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E+ +L + G+ P+ Y +++G C+VG + E I + P
Sbjct: 917 ESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICP--------P 968
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
NV + + +++AL GK D+A LLL M + +P+ + TL+
Sbjct: 969 NVAE----------SAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 1011
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K D EA ++ +M P + ++T ++EA E+ + + N GLK D+
Sbjct: 982 CGKAD--EATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 1039
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y ++ G C G EL E G N T + + G + R F+
Sbjct: 1040 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATT----YKALIRGLLARETAFSGA 1094
>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 500
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA+++ M +NG P V TYT + +A EM + G+ P+V
Sbjct: 229 CRRSRRVEAQELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNV 288
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY++++DG CK GR+ ++LL E + + V +P TI +++VI
Sbjct: 289 VTYSSLIDGLCKGGRAASALDLL-ERLAKEVK-----------------LPNTIIYSSVI 330
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G + +A+ +L M G+ P L+ LI L
Sbjct: 331 NGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKLIVGL 368
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 34/169 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
A ++ M +G+ P TY +L +A + N+ KPD +Y +
Sbjct: 169 AHSLLADMRASGFGPTTATYNVLLKAHCSDAAAHIDDAVRLFRNIP----KPDACSYNTL 224
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------DIGH--- 100
+DG C+ R E EL +E +E G+ P VVT + N + ++G
Sbjct: 225 IDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGI 284
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T++++I LC G+ AL LL + + K+P+ +Y ++I L
Sbjct: 285 APNVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLPNTIIYSSVINGL 333
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA E+L ++ G KPD + ++ G C GR+ E L+E + GV PN VT LH
Sbjct: 341 EAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGVQPNRVTW-SLH 399
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
I++ V+ ALC G++ +A + M G
Sbjct: 400 VRINVA----------VVTALCVKGEVGRAFQVYQSMRTRG 430
>gi|242047058|ref|XP_002461275.1| hypothetical protein SORBIDRAFT_02g043930 [Sorghum bicolor]
gi|241924652|gb|EER97796.1| hypothetical protein SORBIDRAFT_02g043930 [Sorghum bicolor]
Length = 334
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 30/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILE------------AYEMLMNVKNDGLKPDVYTYTAV 57
EAR+V D M G PN +++ IL AY+ + ++ GL PDV T++ +
Sbjct: 114 EARRVFDGMLAAGVAPNASSFNILVKLYAWRTAEFHLAYDEIHAMRRHGLVPDVGTFSTL 173
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ G C+ G+ +E +L+ ++ G P ++H T+ ++Q C
Sbjct: 174 VTGLCRAGKLDEAWGVLDWMLQEGCRP----MVH--------------TYTPIVQGYCCQ 215
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+I++A L+ M E G P+ Y+ LI+ L
Sbjct: 216 GRIEEATNLIGFMEEAGCPPNAVTYNVLIRAL 247
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
+F A I M +G P+V T++ L EA+ +L + +G +P V+TYT
Sbjct: 147 EFHLAYDEIHAMRRHGLVPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYT 206
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC 115
++ G+C GR E L+ E G PN V T+N +I+ALC
Sbjct: 207 PIVQGYCCQGRIEEATNLIGFMEEAGCPPNAV------------------TYNVLIRALC 248
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ D+ +L + G PS Y+ + L ++
Sbjct: 249 DDARFDEVKQVLAEIESKGHKPSTVTYNIYMDALSKK 285
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 29/133 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C EA V+D+M G P V TYT I EA ++ ++ G P+
Sbjct: 178 CRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQGYCCQGRIEEATNLIGFMEEAGCPPNA 237
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ C R +EV ++L E + GH P T+T+N +
Sbjct: 238 VTYNVLIRALCDDARFDEVKQVLAE------------------IESKGHKPSTVTYNIYM 279
Query: 112 QALCGVGKIDKAL 124
AL G +AL
Sbjct: 280 DALSKKGMAKEAL 292
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------- 89
+++++ + G+ P V Y +++ + GR+ E + + + GV PN +
Sbjct: 82 DLMLSATSAGVPPSVLCYNTLLNALAEDGRAVEARRVFDGMLAAGVAPNASSFNILVKLY 141
Query: 90 ------IHL-----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
HL H + G +P TF+ ++ LC GK+D+A +L M + G P
Sbjct: 142 AWRTAEFHLAYDEIHAMRRHGLVPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPM 201
Query: 139 RTLYDTLIK 147
Y +++
Sbjct: 202 VHTYTPIVQ 210
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA +I +M + G PN TY +L E ++L +++ G KP
Sbjct: 212 YCCQGRIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARFDEVKQVLAEIESKGHKPS 271
Query: 51 VYTYTAVMDGFCKVGRSNEVM---ELLNEAIE---RGVTPNVVTLIHLHNVIDIG 99
TY MD K G + E + E+L + ++ G + N+ H++ ++G
Sbjct: 272 TVTYNIYMDALSKKGMAKEALKQFEVLQDEVQFTLNGTSRNIQLHYMCHSLQNVG 326
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A K+ D M + G P+ T+T L +A + + +KPD+
Sbjct: 187 CKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDI 246
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
Y ++DGFCKVG + EL + I R + PN +T I ++ +GH+
Sbjct: 247 VAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDV 306
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T N VI+ C G KA L M G P Y+TLI
Sbjct: 307 MIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +++F EA+++ M G P++ +++ L +A ++K GL PD
Sbjct: 82 CRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDN 141
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
YT +M G+C+ G E +++ +E +E+G +V+ + N
Sbjct: 142 VIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDE 201
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G +P TF +I C G + KAL L M + P Y+TLI
Sbjct: 202 MVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 253
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA ++++ M D G P++ TY + A +L+ + N GL PD
Sbjct: 11 YCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPD 70
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
TY ++ C+ +E E+ E + +GV P++V+ L++
Sbjct: 71 TTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFR 130
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G +P + + ++ C G + +AL + M E G + Y+T++ L ++
Sbjct: 131 DMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKE 189
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ D M PN TY IL EA+ + + G+KP
Sbjct: 256 FCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPT 315
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ T V+ G+C+ G S++ E L I +GV P+ ++
Sbjct: 316 LVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHIS 353
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
TY ++ +C+ G E E++N ++G+ P++ T+N +I
Sbjct: 3 TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSL------------------FTYNAIIN 44
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G+ +A +L M G P T Y+TL+
Sbjct: 45 GLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLL 78
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 12 RKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDG 60
RK + M G P+V TY ++ Y + + ++ GL PDV TY +++DG
Sbjct: 215 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 274
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPR 103
+ KVG EV L NE + G P+++T L N + + G P
Sbjct: 275 YGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPN 334
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T++ +I A C G + A+ LL M G +P+ Y +LI
Sbjct: 335 VVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLI 377
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKP 49
CYC A + M +NG PNV TY T+++A+ ++L +++ GL P
Sbjct: 309 CYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLP 368
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ +TYT+++D CK G E +LLN+ ++ GV N+V T+
Sbjct: 369 NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIV------------------TYTA 410
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC G++ +A + M + G P++ +Y L+
Sbjct: 411 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALV 447
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + EA K+++ M G N+ TYT ++EA E+ ++ DG+ P+
Sbjct: 381 CKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQ 440
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G+ K R + M++L + E + P++ I + ++I
Sbjct: 441 QVYTALVHGYIKAERMEDAMKILKQMTECNIKPDL------------------ILYGSII 482
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C K+++ L+L M G + + T+I
Sbjct: 483 WGHCSQRKLEETKLILEEMKSRGISANPVISTTII 517
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +V M +G PN YT L +A ++L + +KPD+
Sbjct: 416 CKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDL 475
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
Y +++ G C + E +L E RG++ N V L
Sbjct: 476 ILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQE 535
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D+G +T+ +I LC G ++ A+ M G P+ +Y +LI L
Sbjct: 536 MQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL 590
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N A+K+ D M G P++T +T L EA ++ + ++ D+
Sbjct: 591 CXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDL 650
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+ YT+++ GF + G ++ + NE IE+G+ P V I L
Sbjct: 651 HVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICL 691
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 8 FFEARKVIDY------MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+F+A K D M D G + TY +L A + + + GL+P+
Sbjct: 520 YFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPN 579
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
V YT+++DG C +L +E RG+TP++ L
Sbjct: 580 VAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTAL 621
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH-------------- 93
VYTY+ +++G CK + ++ EL +E + +G+ PN V TLI H
Sbjct: 212 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + + L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLI 324
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D + +ID M G P+ TYT L A+E + + ++ D
Sbjct: 293 CKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDE 352
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P+ T+ +I
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDAR------------------TYTMII 394
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + K LL M G +PS Y+ L+
Sbjct: 395 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 29/158 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
F RKV++++ Y V + ILE G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYKEILEC----------GYPASLYFFNILMHRFCKDG 156
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFN 108
+ + + G+ P+VV+ L N ++ G P T++
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC K+D A L M G +P+ ++ TLI
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLI 254
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A ++ M G P+V Y L A E++ ++ +KPD
Sbjct: 338 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY+ ++ G+CKVG + +L + +++GV P+ +T L
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFE 457
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
N++ +G P T+ +I C G ++KAL L M G +P Y LI L +
Sbjct: 458 NMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 515
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C + A +V+ M + G PN+ T+ + A ++ + +GL P
Sbjct: 197 FCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP 256
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT---- 104
DV +Y ++ G+CKVG +E + + +E +RG+ P+VVT L H G++ +
Sbjct: 257 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 316
Query: 105 ------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+TF +I C G +D ALL + M + G PS Y+ LI
Sbjct: 317 AQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALI 370
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M G P+ TY+ L +A E+ N+ G++PD
Sbjct: 408 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYT ++DG CK G + + L +E I +GV P+VV T++ +
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV------------------TYSVL 509
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L + +A LLF +Y +P YD L+
Sbjct: 510 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC E+ V M G P+V T+T L +A ++ ++ GL+ +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI-------- 101
T+TA++DGFCK G ++ + + E + G+ P+VV L N +G +
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T++ +I C VG +D A L M + G +P Y +LI+ L ++
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE 446
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 31/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKP 49
C + EA V+ M G PN TY L E LM + + KP
Sbjct: 163 CARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNA-KP 221
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI- 98
++ T+ ++++G CK GR ++ +E + G+ P+VV TL+ LH + +
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVF 281
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P +TF ++I A C G +++A+ L+ M E G + + LI
Sbjct: 282 SEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+ + M +G PNV TY IL EA ++ +++ G P+ TY ++
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVA 195
Query: 60 GFCKVGR---SNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIG 99
FC+ G + V+ L+ E E PN+VT + N ++ G
Sbjct: 196 AFCRAGELDGAERVVSLMRE--EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREG 253
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +++N ++ C VG + ++L + M + G +P + +LI
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 300
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 28/153 (18%)
Query: 22 GYHPNVTTY----------TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
GY P+V Y ++ A L ++ G+ P+VYTY ++ C GR E +
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172
Query: 72 ELLNEAIERGVTPNVVTLIHL-------------HNVIDI-----GHIPRTITFNNVIQA 113
++ + G PN VT L V+ + P +TFN+++
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNG 232
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G+++ A + M G P Y+TL+
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 265
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A+ + D M NG PNV YT L A+ + + G+ P+
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH-------------- 93
YT+TA++ G C R E +L E +E V PN VT LI H
Sbjct: 495 TYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLD 554
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+++ G +P T T+ +I LC G++ +A
Sbjct: 555 EMVEKGLVPDTYTYRPLISGLCSTGRVSEA 584
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + M G PN TY+IL A L + G+K V
Sbjct: 366 CKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATV 425
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDIGH- 100
Y Y++++ G CK+G+ L +E I G+ PNVV +LI LHN + H
Sbjct: 426 YPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHE 485
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T TF +I LC ++ +A L M E IP+ Y+ LI+
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C DF AR+VI M +G +V TY + EA E+ + GL+ DV
Sbjct: 226 CELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADV 285
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY ++ G CKV E++NE IE G P+ + +L +
Sbjct: 286 GTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNK 345
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V G P +N +I ++C GK+D+A L M G P+ Y LI
Sbjct: 346 VKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILI 397
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 30/167 (17%)
Query: 10 EARKVIDY---MFDNGYHP-NVTTYTILEAYEMLMNVK----------NDGLKPDVYTYT 55
+ R +ID M D G P NV T+++A N+K ++G P+V TYT
Sbjct: 650 DRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYT 709
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPN----------------VVTLIHLHNVIDIG 99
A+++G CK+G ++ L E + PN + I LH+V+ G
Sbjct: 710 ALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG 769
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ T+T+N +I+ C +G+I +A +L M + G P Y T+I
Sbjct: 770 FLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTII 816
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 29/136 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G+ N TY IL EA E+L+N+ + G+ PD +Y+ ++ +C+ G E
Sbjct: 769 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 828
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
++L + RGV P+ T+ +N +I C G++ KA L M
Sbjct: 829 IKLWESMLNRGVNPD------------------TVAYNFLIYGCCVTGELTKAFELRDDM 870
Query: 131 YEHGKIPSRTLYDTLI 146
G P+R Y++LI
Sbjct: 871 MRRGVKPNRATYNSLI 886
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +F ++++ M + G+ P+ + I A++++ VK G+ P +
Sbjct: 296 CKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSL 355
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+ Y A+++ CK G+ +E L N +G+ PN VT L L
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ ++G ++++I C +GK+ A L M +G P+ +Y +LI
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLIS 468
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A +++D M + G P+ TY L EA E + +++ + K +
Sbjct: 540 HCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLN 599
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
++A++ G+CK GR ++ ++ E + RGV ++V LI+ L
Sbjct: 600 EMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLK 659
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G P + + +I A G + A L +M G +P+ Y LI L
Sbjct: 660 QMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGL 715
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ N EA K+ M + PN TY +L A+E+L + GL PD
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY ++ G C GR +E E +N+ N + F+ ++
Sbjct: 566 YTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLN------------------EMCFSALL 607
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C G++D AL M G Y LI + +Q
Sbjct: 608 HGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +V+ M D+G P+ +Y+ + EA ++ ++ N G+ PD
Sbjct: 784 FCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPD 843
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH 91
Y ++ G C G + EL ++ + RGV PN T LIH
Sbjct: 844 TVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIH 887
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 14 VIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V+ M D G P + T + A + + + GL+PDVY YTAV+ C
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLC 226
Query: 63 KVG---RSNEVMELLNEA-----------IERGVTPN--VVTLIHLHNVIDIGHIPRTI- 105
++ R+ EV+ + + RG+ N V + + N++ + +
Sbjct: 227 ELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVG 286
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ ++ LC V + + ++ M E G +PS L+ L ++
Sbjct: 287 TYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKK 333
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + D EA K+ + M + G +P+ Y L +A+E+ ++ G+KP+
Sbjct: 819 YCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPN 878
Query: 51 VYTYTAVMDGFC 62
TY +++ G C
Sbjct: 879 RATYNSLIHGTC 890
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 32/182 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V++ GY P+V T+ L A +++ + G+ PDV
Sbjct: 431 CKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDV 490
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDI------------ 98
TY +V++G CK G++ EV E E I +G PN +T I + N I
Sbjct: 491 ITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVR 550
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI----KKLD 150
G +P ++FN +I C G +D A LL + E G + ++ LI KL+
Sbjct: 551 MCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLN 610
Query: 151 QQ 152
Q
Sbjct: 611 MQ 612
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +V++ M + G HP++ TY I+ +A ++ + G PDV
Sbjct: 396 CRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDV 455
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
+T+ ++DG+CK + + ++L+ G+ P+V+T + N
Sbjct: 456 FTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEE 515
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G P IT+N +I+ C + ++++A ++ M + G +P ++TLI
Sbjct: 516 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLI 567
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGY-HPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C EA +++ M Y P+V TY L EA + L + N G PD
Sbjct: 257 CEDGRLEEAVALVERM--GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPD 314
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----DIGHI----- 101
+TY ++DG+CK G E ELL +A+ +G P+ VT L N + DI
Sbjct: 315 DFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFN 374
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + +N++++ LC G I AL ++ M E G P Y+ +I L
Sbjct: 375 EAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGL 430
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A ++ + P++ Y IL A +++ + +G PD+
Sbjct: 361 CAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDI 420
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY +++G CK+G ++ ++N+AI +G P+V TFN +I
Sbjct: 421 WTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDV------------------FTFNTLI 462
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C K+D AL L+ M+ +G P Y++++ L
Sbjct: 463 DGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGL 500
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVK----------NDGLKPD 50
+C D A + + + GY T+ IL AY +N++ + G KPD
Sbjct: 570 FCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 629
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY ++DG CK + L E I +G P++ T + N++ + H
Sbjct: 630 LYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNH---------- 679
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ +A+ ++ +M G +P + DT++
Sbjct: 680 --------RVSEAVAIIHIMVRMGVVPE--VVDTILS 706
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E + + M G PN TY IL EA +++ + DGL PD
Sbjct: 501 CKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDA 560
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHN-------------- 94
++ ++ GFC+ G + L + E+G + T LI ++
Sbjct: 561 VSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGE 620
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G+ P T+ ++ LC +D+A L M G +PS + ++ L
Sbjct: 621 MISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLL 675
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
PDV T+ V+ C+ G E LL + ++RG++ N T I + + + G +
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N +++ LC K+ +A L M G IP Y+T+I
Sbjct: 269 VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTII 322
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 25/153 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
++D + + YH +A+++ + + G+ PD T+T + FC GR + + L
Sbjct: 112 IMDALVNAAYHD--------QAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRL 163
Query: 74 LNEAIERGVTPN------VVTLIHLHN-----------VIDIGHIPRTITFNNVIQALCG 116
L ERG VV ++ H ++ P TFNNV+ ALC
Sbjct: 164 LRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQ 223
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + ++ LL + + G ++ + I+ L
Sbjct: 224 KGDVMESGALLAKVLKRGMSANKFTCNIWIRGL 256
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 29/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D A++V++ M D G++P+ TTYT+L EA ++ +++ + ++P+
Sbjct: 236 YVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN 295
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVIDIGHIPR 103
TY ++ CK +S E + +E +ER P+ + L H V + + R
Sbjct: 296 EVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWR 355
Query: 104 TITFNN----------VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ NN +I LC G++ +A LF +E G IPS Y+TLI
Sbjct: 356 KMLKNNCMPDNALLSTLIHWLCKEGRVTEA-RKLFDEFEKGSIPSLLTYNTLI 407
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C KND A KV+D + G PN+ TYT + A +L + + G PD
Sbjct: 202 CKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDA 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYT +MDG+CK+GR +E ++++ + + PN VT +I
Sbjct: 262 TTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDE 321
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ +P + VI ALC K+D+A L M ++ +P L TLI L
Sbjct: 322 MLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWL 376
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EARK+ D F+ G P++ TY L EA + ++ KP+
Sbjct: 377 CKEGRVTEARKLFD-EFEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNA 435
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRTITFNNV 110
+TY +++G K G E + +L E +E G PN T LI + +G + +
Sbjct: 436 FTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAM---KI 492
Query: 111 IQALCGVGKIDKALLLLFL 129
+ GK+DK LFL
Sbjct: 493 VSMAVMNGKVDKESWELFL 511
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 18/132 (13%)
Query: 36 YEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH--- 91
+ M N K G+ P+++T ++ CK ++L+E G+ PN+VT
Sbjct: 175 HAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILG 234
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L ++D G P T+ ++ C +G+ +A ++ M ++ P
Sbjct: 235 GYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEP 294
Query: 138 SRTLYDTLIKKL 149
+ Y +I+ L
Sbjct: 295 NEVTYGVMIRAL 306
>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC K +A ++++ PN+ Y+ +LEA + + GL PD
Sbjct: 334 YCKKGRSDKAINLLNFF---NVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPD 390
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+ YT ++ G+CKVG N+ + L E ++ G+TP+V T LI+ L
Sbjct: 391 CFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQ 450
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G IP +TFN +I G + KA LL +M G P Y+ LI L
Sbjct: 451 RMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSL 506
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 28/161 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++D M G P+ TY L EA ++L + GL PDV T+T V+
Sbjct: 479 KAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVI 538
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHI 101
DGF K G E + + ER V P+VVT L N ++D G
Sbjct: 539 DGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLK 598
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P + +NN+I C G ++ A L+ +M + G +P+ T +
Sbjct: 599 PDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTH 639
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A ++ M G P+V T+ L +A+E+L +++ G+ PD
Sbjct: 437 CKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDT 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-------------- 97
TY A++ G NE ++L+E I RG++P+V+T +VID
Sbjct: 497 VTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFT---DVIDGFSKKGNFEEAFLV 553
Query: 98 -----IGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H+ P +T + ++ C ++D+A L M + G P LY+ LI
Sbjct: 554 WSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLI 608
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K +F EA V YM + P+V T + L EA + + + + GLKPD
Sbjct: 541 FSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPD 600
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ Y ++ GFC G N L+ I+ G PN+ T
Sbjct: 601 LVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITT 638
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 60/167 (35%), Gaps = 55/167 (32%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMD-------------------------------- 59
I +++LM +KN G+K DV YT V+D
Sbjct: 270 IQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSS 329
Query: 60 ---GFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIG 99
G+CK GRS++ + LLN V PN+ + + G
Sbjct: 330 VIDGYCKKGRSDKAINLLNFF---NVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFG 386
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + +I C VG I+KA L M + G PS T Y LI
Sbjct: 387 LYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLI 433
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C+ D A ++++ M ++G PNV Y+ +L Y ++ + G++PDV
Sbjct: 140 CDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDV 199
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++D C+ G+ + +++ ERG+ PNVVT +N +I
Sbjct: 200 VMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVT------------------YNVLI 241
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++C G + +AL L M E G P Y+TLI L
Sbjct: 242 NSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGL 279
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN +YT L +A +L ++++ G++PDV TY ++ G C + +EL
Sbjct: 92 PNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVEL 151
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
LNE E G+ PNVV L+H + G P + + +I +LC
Sbjct: 152 LNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCR 211
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GK+ KA ++ +M E G P+ Y+ LI +
Sbjct: 212 HGKVKKAARVMDMMTERGLEPNVVTYNVLINSM 244
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 30/163 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + KV + M G P+V YT L +A ++ + GL+P+
Sbjct: 174 YCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPN 233
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNVIDIGHI----- 101
V TY +++ CK G E ++L E+GV P+VVT + L +V+++
Sbjct: 234 VVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLE 293
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
P +TFN+VI LC +G + +AL + +M E+G
Sbjct: 294 EMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENG 336
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++D M +G P+ TY+IL A L +++ G++P+ Y ++
Sbjct: 359 KAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLL 418
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
C G + +L NE ++R + T+IH L ++ID G I
Sbjct: 419 KAMCDQGMMGQARDLFNE-MDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLI 477
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +T++ I G + A +L M G +P ++D+LI+
Sbjct: 478 PDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQ 523
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 65/215 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+D M + G PNV TY +L EA ++ N+ G++PDV
Sbjct: 210 CRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDV 269
Query: 52 YTYT-------------------------------------AVMDGFCKVGRSNEVMELL 74
TY +V+ G CK+G + +++
Sbjct: 270 VTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVR 329
Query: 75 NEAIERGVTPNVVT-------LIHLHNV----------IDIGHIPRTITFNNVIQALCGV 117
E G N+V L+ +H V G P + T++ +I C +
Sbjct: 330 AMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKM 389
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++++A L M G P Y L+K + Q
Sbjct: 390 RQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQ 424
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ +YT +M C R+ + + LL + GV P+VV T+
Sbjct: 91 RPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVV------------------TY 132
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I+ LC +D A+ LL M E G P+ +Y L+
Sbjct: 133 GTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLL 171
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 33/161 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E R+++D M + G P+V TY L A E+L + ++ P+
Sbjct: 120 CKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNE 179
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ GFC+ + M LL++ +E +TP+VVT +N++I
Sbjct: 180 RTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVT------------------YNSLI 221
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLY----DTLIKK 148
C +G +D A LL LM E+G +P + Y DTL KK
Sbjct: 222 HGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKK 262
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +++ M G V TYTIL A+ +L + + G +PDV
Sbjct: 330 CKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDV 389
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y YTA + FC G E ++++ ERGV P+ +T+ VI
Sbjct: 390 YIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPD------------------ALTYTLVI 431
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
A G+G ++ A +L M++ G PS Y LIK L
Sbjct: 432 DAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHL 469
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K + A ++ M ++ P+V TY L AY +L + +G+ PD
Sbjct: 189 FCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPD 248
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TY+ +D CK GR E L N E+G+ N V LI L
Sbjct: 249 QWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLD 308
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P + T+N +I LC K+ +ALLL+ M + G + Y LI
Sbjct: 309 RMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILI 361
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
C E + M ++ +P V TYT+ +EA + ++ G +P++
Sbjct: 50 CEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNI 109
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVIDI 98
+TYT +++ CK + E +L+E +E+G+ P+V T L ++D+
Sbjct: 110 HTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDL 169
Query: 99 GHI----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H P T+N +I C + +A+ LL M E PS Y++LI
Sbjct: 170 MHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLI 221
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A++++D M N +PN TY L A +L + L P
Sbjct: 154 YCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPS 213
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IHLHNVI-- 96
V TY +++ G CK+G + LLN E GV P+ T I NV+
Sbjct: 214 VVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFN 273
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G + + +I C GK+D A LL M +P+ + Y+ LI L ++
Sbjct: 274 SLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKE 332
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 57/199 (28%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYT 53
+ DF A +++D M +GY P+V YT I EA +M+ + G+ PD T
Sbjct: 367 EGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALT 426
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTP----------------------NVVTLIH 91
YT V+D + +G N ++L + G P NV
Sbjct: 427 YTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDS 486
Query: 92 LHNV------------------------IDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ NV ++ G P T+ +I LC VG++ A L
Sbjct: 487 IPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLF 546
Query: 128 FLMYEHGKIPSRTLYDTLI 146
M E G PS +Y++L+
Sbjct: 547 DHMNERGVSPSEAIYNSLL 565
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
T LE +E ++ G P++ TY ++ G CKVGR +L + ERGV+P+
Sbjct: 506 TALELFEKMLE---HGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPS----- 557
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+N+++ C +G A+ L+ M EHG +P
Sbjct: 558 -------------EAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLP 591
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH 91
A+ + + G + + +YT ++ G C+VGR +E + + + E P V T ++H
Sbjct: 23 AFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVH 82
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ + G P T+ +I A+C K+++ +L M E G +P
Sbjct: 83 ALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVP 142
Query: 138 SRTLYDTLI 146
S Y+ LI
Sbjct: 143 SVPTYNALI 151
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 28/171 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F A ++ + M ++G PN+ TY L A ++ ++ G+ P Y +
Sbjct: 504 FETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNS 563
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIG 99
+++ C++G + + L+ +E G P + +L + N++ G
Sbjct: 564 LLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCG 623
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ + + +I L G D LL +M G Y LI+ LD
Sbjct: 624 YNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGLD 674
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
YTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 212 XYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 RMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLI 324
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A +ID M G P+ TYT L A+E + + ++ D
Sbjct: 293 CKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 352
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P+ T T+ +I
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD------------------TGTYTMII 394
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + K LL M +G +PS Y+ L+
Sbjct: 395 NEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLM 429
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 159 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254
>gi|255561341|ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539072|gb|EEF40668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 458
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C C ID M + PN+ TYTIL EA +L ++ G K
Sbjct: 198 CLCKCRALSNVYSFIDEMRSSFDLEPNLVTYTILIDNVCNSKNLREAMRLLGILRECGFK 257
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------H 91
PD + Y +M G+C + + ++ +++ + E G+ P+++ TLI +
Sbjct: 258 PDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRY 317
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L +++ GH P +T+ +++ LC G AL LL M G P+ Y+TL+
Sbjct: 318 LKIMVESGHFPDAVTYTSLMNGLCRKGDALGALALLEDMEMKGCSPNSCTYNTLL 372
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMN----------VKNDGLKPDV 51
CN + EA +++ + + G+ P+ Y TI++ Y ML +K +G++PD+
Sbjct: 236 CNSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEGIEPDL 295
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------D 97
TY ++ G K GR +E L +E G P+ VT L N + D
Sbjct: 296 ITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMNGLCRKGDALGALALLED 355
Query: 98 I---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P + T+N ++ LC ++K + L ++ E G + Y T ++ L ++
Sbjct: 356 MEMKGCSPNSCTYNTLLYGLCKERLLEKGIELYNVIKEGGMLLDTASYATFVRALCRE 413
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A +V M + G P++ TY L EA L + G PD
Sbjct: 270 YCMLSKGSDAIQVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPD 329
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHN 94
TYT++M+G C+ G + + LL + +G +PN T I L+N
Sbjct: 330 AVTYTSLMNGLCRKGDALGALALLEDMEMKGCSPNSCTYNTLLYGLCKERLLEKGIELYN 389
Query: 95 VI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
VI + G + T ++ ++ALC GK+ +A + E + + Y TL
Sbjct: 390 VIKEGGMLLDTASYATFVRALCREGKVAEAYEVFDYAVESKSLTNAAAYTTL 441
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 29/168 (17%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++++ M +NG+ P T I +A +++ + KPD +TY ++
Sbjct: 140 QILNLMVNNGFMPTQVTVDIAVRALCSAGKEDDAVKLVKELSLKHSKPDSFTYNFLVKCL 199
Query: 62 CKVGRSNEVMELLNEAIER-GVTPNVVT-LIHLHNVI----------------DIGHIPR 103
CK + V ++E + PN+VT I + NV + G P
Sbjct: 200 CKCRALSNVYSFIDEMRSSFDLEPNLVTYTILIDNVCNSKNLREAMRLLGILRECGFKPD 259
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+N +++ C + K A+ + M E G P Y+TLI L +
Sbjct: 260 CFVYNTIMKGYCMLSKGSDAIQVFKKMKEEGIEPDLITYNTLIFGLSK 307
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D A +++ M G PN TY L + E+ +K G+ D
Sbjct: 341 CRKGDALGALALLEDMEMKGCSPNSCTYNTLLYGLCKERLLEKGIELYNVIKEGGMLLDT 400
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
+Y + C+ G+ E E+ + A+E N L + +
Sbjct: 401 ASYATFVRALCREGKVAEAYEVFDYAVESKSLTNAAAYTTLESTL 445
>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
+C+ N F+EA ++D + GY PNV Y TI++ A ++L ++K G++PD
Sbjct: 159 FCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPD 218
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV--------------- 95
V TY +++ G +L++ + G++P+V+T L +V
Sbjct: 219 VVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYN 278
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I P +T+N++I LC G +D+A +L ++ G P+ Y+TLI
Sbjct: 279 EMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLI 331
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K A V+ +M G P+V TY L + +L ++ G+ PDV
Sbjct: 195 CEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDV 254
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------LIH---------LHN 94
T++A++D + K G+ E + NE I+R V PN+VT IH L+
Sbjct: 255 ITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNV 314
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ G P +T+N +I C ++D + +L +M G Y+TL
Sbjct: 315 LVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTL 365
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+KV++ + G+ PN TY L + ++L + DG+ D +TY +
Sbjct: 307 EAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLY 366
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------------- 104
G+C+ G+ + ++L + GV P++ T I L + D G I +
Sbjct: 367 QGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTV 426
Query: 105 ---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
IT+N +I+ LC K++ A L + G P Y T++ L ++
Sbjct: 427 VGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRK 477
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ D+Y++T ++D FC+ R + + L + ++ G P++VT L N
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +G+ P + +N +I +LC G+++ AL +L M + G P Y++LI +
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITR 228
Query: 149 L 149
L
Sbjct: 229 L 229
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC F A KV+ M G HP++ T+ IL +A L +++
Sbjct: 369 YCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVG 428
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
+ TY ++ G CK + + L +GV+P+V+T I
Sbjct: 429 IITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYI 468
>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 463
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C D + +D M D+ P++ ++TIL EA ++ + N G KPD
Sbjct: 205 CKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPD 264
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
+ Y +M GFC + + +E + + + E GV P+ +T ++L
Sbjct: 265 CFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLK 324
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G+ P T T+ +++ +C G+ AL LL M G P+ Y+TL+ L
Sbjct: 325 TMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGL 380
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA V M + G P+ TY L EA L + + G +PD
Sbjct: 275 FCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPD 334
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT++M+G C+ G S + LL E RG PN T+N +
Sbjct: 335 TATYTSLMNGMCRKGESLGALSLLEEMEARGCAPN------------------DCTYNTL 376
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC +DK + L +M G Y TL++ L
Sbjct: 377 LHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSL 415
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-- 88
+I + +L + N+GL+PD T + C+ GR +E +L+ E E+ P+ T
Sbjct: 139 SISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYN 198
Query: 89 --LIHLHNVIDIGHI---------------PRTITFNNVIQALCGVGKIDKALLLLFLMY 131
L HL D+ H+ P ++F +I +C + +A+ L+ +
Sbjct: 199 FLLKHLCKCKDL-HVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLG 257
Query: 132 EHGKIPSRTLYDTLIK 147
G P LY+T++K
Sbjct: 258 NAGFKPDCFLYNTIMK 273
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C D + +D M D+ P++ ++TIL EA ++ + N G KPD
Sbjct: 205 CKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPD 264
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
+ Y +M GFC + + +E + + + E GV P+ +T ++L
Sbjct: 265 CFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLK 324
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G+ P T T+ +++ +C G+ AL LL M G P+ Y+TL+ L
Sbjct: 325 TMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGL 380
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA V M + G P+ TY L EA L + + G +PD
Sbjct: 275 FCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPD 334
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT++M+G C+ G S + LL E RG PN T+N +
Sbjct: 335 TATYTSLMNGMCRKGESLGALSLLEEMEARGCAPN------------------DCTYNTL 376
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC +DK + L +M G Y TL++ L
Sbjct: 377 LHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSL 415
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-- 88
+I + +L + N+GL+PD T + C+ GR +E +L+ E E+ P+ T
Sbjct: 139 SISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYN 198
Query: 89 --LIHLHNVIDIGHI---------------PRTITFNNVIQALCGVGKIDKALLLLFLMY 131
L HL D+ H+ P ++F +I +C + +A+ L+ +
Sbjct: 199 FLLKHLCKCKDL-HVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLG 257
Query: 132 EHGKIPSRTLYDTLIK 147
G P LY+T++K
Sbjct: 258 NAGFKPDCFLYNTIMK 273
>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
herrerae]
Length = 395
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V D + G P+V ++ L E + + + G++PD
Sbjct: 133 FCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPD 192
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E +++G+ PN VT L
Sbjct: 193 VYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N + LC G + +A L+ M G P + Y TLI
Sbjct: 253 QMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 305
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 238 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPD 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT ++DG CK G ME E +R + N I L +V+ + +
Sbjct: 298 KITYTTLIDGCCKEGD----METAFEHQKRMIQEN----IRLDDVV----------YTAL 339
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G+ A +L M G P+ Y +I
Sbjct: 340 ISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMII 375
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 29/154 (18%)
Query: 12 RKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
RKV++++ Y V + ILE G +Y + +M FCK G
Sbjct: 92 RKVLEHLMKLKYFKLVWGFYKEILEC----------GYPASLYFFNILMHRFCKEGDIRL 141
Query: 70 VMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNVIQ 112
+ + + G+ P+VV+ L N I +G + P T++ +I
Sbjct: 142 AQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLIN 201
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC K+D A L M + G +P+ + TLI
Sbjct: 202 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 235
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 28/167 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + D+G+ PNV TY +I EA +++ GL P+V YTA++
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALV 545
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHN-------VIDIGHI 101
DG CK G NE ++L NE + +G++ + V +LH+ +ID G
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQ 605
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ I C + + +A + M HG P R +Y+ LI K
Sbjct: 606 LDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISK 652
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V+ M G N YT L +A +L +KN GL+ D+
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
Y A++ G C V + +E LL + E G+ PN + + L
Sbjct: 434 SLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQK 493
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P IT+ +I LC G ID+A+ M + G P+ Y L+ L
Sbjct: 494 ILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGL 548
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + EA+ ++ M ++G PN YT + EA ML + + G +P+V
Sbjct: 444 CNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNV 503
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY A++DG CK G +E + N+ + G+ PNV + ++
Sbjct: 504 ITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ------------------AYTALV 545
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G +++A+ L M G + +Y L+
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C+C A M G NV T++ + EA ++ ++ G+
Sbjct: 267 CFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMAL 326
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ +TYT ++DG CK GR ++ + LL+E + +GV NVV T+
Sbjct: 327 NEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV------------------TYTV 368
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC K+ +A +L +M + G + LY TLI
Sbjct: 369 LVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLI 405
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + EAR + M + G P+V T+ L E +++ ++ G K DV
Sbjct: 199 CKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADV 258
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNV 95
TY A+++ FCK GR GV NVVT + L
Sbjct: 259 VTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQ 318
Query: 96 IDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G T+ +I C G++D A++LL M G + Y L+ L
Sbjct: 319 MRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ + M G + YT L +A+ + + + GL+ D+
Sbjct: 549 CKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL 608
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+ YT + GFC + E E+ +E I G+ P+
Sbjct: 609 FCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642
>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A K +D M D G PNV TYT L +A +L +K+ G++ ++
Sbjct: 375 CKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANM 434
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY ++DG CK GR + ++ + + +G HNV +T++ +I
Sbjct: 435 YTYNILVDGLCKDGRLTDAQKVFQDLLMKG-----------HNV-------DVVTYSIMI 476
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC D+AL LL M + G +P Y+T+I
Sbjct: 477 NGLCKESLFDEALTLLSKMEDKGCVPDAIAYETII 511
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A+ V + M G +V +Y+++ EA ++ ++N+ + PDV Y++++
Sbjct: 312 KAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLI 371
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG CK GR N ++ ++E +RG PNV IT+ ++I ALC
Sbjct: 372 DGLCKSGRINSALKYVDEMHDRGQPPNV------------------ITYTSLIDALCKSH 413
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++DKA+ LL + + G + Y+ L+ L
Sbjct: 414 QVDKAIALLKKIKDQGIQANMYTYNILVDGL 444
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A +++ M +PNV T+ L EA ++ + +G+ PD
Sbjct: 234 FCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPD 293
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDIGH 100
V+TY A+MDG+ V + + + N + GVT +V + + L +D+
Sbjct: 294 VFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFE 353
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IP + ++++I LC G+I+ AL + M++ G+ P+ Y +LI L
Sbjct: 354 GMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDAL 409
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ +A+++ + + P+V TYT+++ GFC VG+ ++ LLNE + + V PNV
Sbjct: 205 VRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVC---- 260
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN ++ LC GK+ +A L+ +M + G P Y+ L+
Sbjct: 261 --------------TFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALM 301
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
A+ + + G +PD+ TYT ++ G C G+ E + + + +G+ + V+ L
Sbjct: 102 SAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLI 161
Query: 94 N-VIDIGHI----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N + IG P + +N +I LC + A L M+E
Sbjct: 162 NGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVF 221
Query: 137 PSRTLYDTLI 146
P+ Y +LI
Sbjct: 222 PNVVTYTSLI 231
>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
Length = 332
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M +G P+ TY + EA L +++DG++PDV
Sbjct: 58 CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDV 117
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 118 VTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDL 177
Query: 99 ---------------------------------------GHIPRTITFNNVIQALCGVGK 119
G P +T+ VI LC G+
Sbjct: 178 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 237
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ A+L M + G P +Y++LI L
Sbjct: 238 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSL 267
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL EA + ++ GL P+
Sbjct: 162 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 221
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TY V+D CK GR + M + I+ G+ P+ + +LIH
Sbjct: 222 AVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFL 281
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++D G TI FN++I + C G++ +++ L LM G P
Sbjct: 282 EMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKP 325
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYE----------MLMNVKNDGLKPDV 51
C EARK+ D M G P++TTY T+L+ Y +L + +G+ P+
Sbjct: 128 CKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 187
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
Y ++ ++ + K + E M + ++ ++G+ PN VT +++
Sbjct: 188 YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ 247
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ID G P +I +N++I +LC K +KA L M + G S ++++I
Sbjct: 248 MIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 299
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDV +Y+ V++GF K G ++ NE +++ ++PNVV T+N
Sbjct: 10 PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVV------------------TYN 51
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++I ALC +DKA+ +L M + G +P Y++++
Sbjct: 52 SIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 89
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------L 89
+ P+V TY +++ CK ++ ME+L ++ GV P+ +T +
Sbjct: 43 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 102
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ L + G P +T+N+++ LC G+ +A + M + G P T Y TL++
Sbjct: 103 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 160
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M D G P+ Y L +A E+ + + + G+
Sbjct: 233 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 292
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ +++D CK GR E ++L + + GV P+++TL
Sbjct: 293 IFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDIITL 330
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A K+ D M + G P+ T+T L +A + + +KPD+
Sbjct: 339 CKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDI 398
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
Y ++DGFCKVG + EL + I R + PN +T I ++ +GH+
Sbjct: 399 VAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDV 458
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T N VI+ C G KA L M G P Y+TLI
Sbjct: 459 MIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 510
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ D M PN TY IL EA+ + + G+KP
Sbjct: 408 FCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPT 467
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ T V+ G+C+ G S++ E L I +GV P+ ++ + ++
Sbjct: 468 LVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWIN 527
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G +P IT+N V+ C G++ +A L+L M E G P R+ Y LI
Sbjct: 528 KMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALI 580
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F + + + M NG + ++ TY L EA+E++ ++ + GLKP +
Sbjct: 129 CKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSL 188
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+TY A+++G CK GR +L E + G++P+ T L
Sbjct: 189 FTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGE 248
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G +P ++F+++I +D+AL+ M + G +P +Y L+
Sbjct: 249 MLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 300
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +++F EA+++ M G P++ +++ L +A ++K GL PD
Sbjct: 234 CRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDN 293
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
YT +M G+C+ G E +++ +E +E+G +V+ + N
Sbjct: 294 VIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDE 353
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G +P TF +I C G + KAL L M + P Y+TLI
Sbjct: 354 MVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 405
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D +A + + M G P+ +Y L +A+ + ++ +GL PD
Sbjct: 478 YCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPD 537
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
+ TY VM+GFC+ GR E +L + IE+G+ P+ T L N GH+ +
Sbjct: 538 IITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALIN----GHVTQ 586
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA ++++ M D G P++ TY + A +L+ + N GL PD
Sbjct: 163 YCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPD 222
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
TY ++ C+ +E E+ E + +GV P++V+ L++
Sbjct: 223 TTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFR 282
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G +P + + ++ C G + +AL + M E G + Y+T++ L ++
Sbjct: 283 DMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKE 341
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH 91
A+E+ V G++ +VYT +++ CK G+ ++V L+E G+ ++V TLI
Sbjct: 102 AWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIG 161
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++++ D G P T+N +I LC G+ +A +L M G P
Sbjct: 162 AYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSP 221
Query: 138 SRTLYDTLI 146
T Y+TL+
Sbjct: 222 DTTTYNTLL 230
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 15 IDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
I+ M G P++ TY ++ EA +L + G+ PD TYTA+++G
Sbjct: 526 INKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVT 585
Query: 64 VGRSNEVMELLNEAIERGVTPNVV 87
NE +E ++RG P+ V
Sbjct: 586 QDNLNEAFRFHDEMLQRGFAPDDV 609
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVK---NDGLKPDV 51
C +++ EA+++ D M G P++ +++ L Y+ LM+ + G+ PD
Sbjct: 373 CRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN 432
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
YT ++DGFC+ G ++ +++ +E + RG +VVT + +
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G +P TF +I+ C G +DKAL L M P + Y+TLI
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLI 544
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K F +A + + M + G P+ T+T L +A + + LKPD
Sbjct: 478 CKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDK 537
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TY ++DGFCK G EL ++ I + + P+ ++ + N
Sbjct: 538 VTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQ 597
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P +T N +I+ C G + KA L M +G IP Y+TLI
Sbjct: 598 MLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLI 649
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F + M G ++ TY L EA+++L + + G++P +
Sbjct: 268 CKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGL 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID- 97
TY A++ G CK+G+ + ++L E ++ G+TPN T ++ + D
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P ++F+++I L G + +AL+ M G +P +Y LI
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILI 439
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ EA + D M + G PN+ T L +AYE L + ++G+ PD
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++Y ++DG+ K + L+NE +RG+ N+ IT+N +
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI------------------ITYNLI 683
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ C GK+ +A +L M E G P Y +LI
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D +A + + M NG P+ +Y L +A+ ++ ++ GL+ +
Sbjct: 617 YCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFN 676
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
+ TY +++GFC G+ E ++L + IE G+ P+ T L N GH+ +
Sbjct: 677 IITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN----GHVSQ 725
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
YC + EA ++++ G P + TY + A ++L+ + GL P
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTP 360
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+ TY ++ C+ E E+ +E RGV P++V+ L+H
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P + + +I C G + AL + M G Y+T + L
Sbjct: 421 REMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGL 477
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + +A +I+ M G N+ TY ++ EA ++L + G+ PD
Sbjct: 652 YLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPD 711
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
TY+++++G E +E ++RG+ P+
Sbjct: 712 GATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746
>gi|388490582|gb|AFK33357.1| unknown [Medicago truncatula]
Length = 389
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
++ +++D + G PNV TY+IL EA ++L ++ G KP++ +Y ++
Sbjct: 7 QSMQILDRLIKKGLVPNVVTYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSYNVLL 66
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G CK GR+ + ++L E E+G P VV+ HN++ +++LC G
Sbjct: 67 TGLCKEGRTEDAIKLFKELPEKGFKPCVVS----HNIL--------------LRSLCYEG 108
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D+A L+ M G+ PS Y+ LI L
Sbjct: 109 RWDEAYELMAGMDRDGQAPSVVTYNVLITSLS 140
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY + D EA +++ M +G P+V TY +L +A+++L + G K
Sbjct: 105 CYEGRWD--EAYELMAGMDRDGQAPSVVTYNVLITSLSIDGRIEQAFKVLDEMTKSGFKV 162
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHNVIDIGHI--- 101
+Y ++ CK GR + V++ L++ I R G T N + L+ ++ +
Sbjct: 163 SANSYNPIIARLCKEGRVDLVVQCLDQMINRRFHLNGGTYNAIALLCERGMVKEAFLILE 222
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + + NVI LC G A +L+ M HG P Y +LI+ +
Sbjct: 223 RLGKKQNYPISDFYKNVITLLCRKGSTYPAFQILYEMTVHGFTPDSYTYSSLIRGM 278
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 18/115 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+++L + G PD YTY++++ G C+ G +L+EA++ + ++ H
Sbjct: 252 AFQILYEMTVHGFTPDSYTYSSLIRGMCREG-------MLDEALQ------IFGILEEH- 297
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G++P +N +I LC +ID ++ + +M G +P+ Y+ ++ L
Sbjct: 298 ----GYVPHVDNYNALILGLCKSQRIDMSIEIFQMMVNKGCMPNEMTYNIFVEAL 348
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 65 GRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITF 107
G+ N+ M++L+ I++G+ PNVVT LI L ++I G P +++
Sbjct: 3 GKLNQSMQILDRLIKKGLVPNVVTYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSY 62
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ LC G+ + A+ L + E G P ++ L++ L
Sbjct: 63 NVLLTGLCKEGRTEDAIKLFKELPEKGFKPCVVSHNILLRSL 104
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 29/150 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + A +++ M +G+ P+ TY+ L EA ++ ++ G P V
Sbjct: 244 CRKGSTYPAFQILYEMTVHGFTPDSYTYSSLIRGMCREGMLDEALQIFGILEEHGYVPHV 303
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y A++ G CK R + +E+ + +G PN +T+N +
Sbjct: 304 DNYNALILGLCKSQRIDMSIEIFQMMVNKGCMPN------------------EMTYNIFV 345
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+AL +++ A LL +Y G + T+
Sbjct: 346 EALAFEEEMELAATLLNELYLKGVLSQSTV 375
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVK---NDGLKPDV 51
C +++ EA+++ D M G P++ +++ L Y+ LM+ + G+ PD
Sbjct: 373 CRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN 432
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
YT ++DGFC+ G ++ +++ +E + RG +VVT + +
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G +P TF +I+ C G +DKAL L M P + Y+TLI
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLI 544
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K F +A + + M + G P+ T+T L +A + + LKPD
Sbjct: 478 CKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDK 537
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TY ++DGFCK G EL ++ I + + P+ ++ + N
Sbjct: 538 VTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQ 597
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P +T N +I+ C G + KA L M +G IP Y+TLI
Sbjct: 598 MLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLI 649
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F + M G ++ TY L EA+++L + + G++P +
Sbjct: 268 CKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGL 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID- 97
TY A++ G CK+G+ + ++L E ++ G+TPN T ++ + D
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P ++F+++I L G + +AL+ M G +P +Y LI
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILI 439
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ EA + D M + G PN+ T L +AYE L + ++G+ PD
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++Y ++DG+ K + L+NE +RG+ N+ IT+N +
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI------------------ITYNLI 683
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ C GK+ +A +L M E G P Y +LI
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D +A + + M NG P+ +Y L +A+ ++ ++ GL+ +
Sbjct: 617 YCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFN 676
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
+ TY +++GFC G+ E ++L + IE G+ P+ T L N GH+ +
Sbjct: 677 IITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN----GHVSQ 725
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
YC + EA ++++ G P + TY + A ++L+ + GL P
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTP 360
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+ TY ++ C+ E E+ +E RGV P++V+ L+H
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P + + +I C G + AL + M G Y+T + L
Sbjct: 421 REMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGL 477
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + +A +I+ M G N+ TY ++ EA ++L + G+ PD
Sbjct: 652 YLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPD 711
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
TY+++++G E +E ++RG+ P+
Sbjct: 712 GATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K ++D M NG HP+ Y IL EA + ++ GL PD
Sbjct: 316 YATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPD 375
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY AV+ CK GR + M + I+ G++P N+V +LIH +
Sbjct: 376 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 435
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P Y TLI
Sbjct: 436 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 488
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 31/162 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C CNK + A ++I M D G N + ++E+ ++ + G+KP
Sbjct: 422 CTCNKWE--RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 479
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+ TY+ ++DG+C G+ +E M+LL+ + G+ PN T+T+
Sbjct: 480 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPN------------------TVTYRT 521
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I C + ++ AL+L M G P Y+ +++ L Q
Sbjct: 522 LINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQ 563
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 33/162 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D P+V TY+ + +A E+L ++ +G+ P+ TYT++M G+C G+
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQ 281
Query: 67 SNEVMELLNEAIERGVTPNVV------------------TLIHLHNVIDI----GHIPRT 104
E + L + GV P+ + L+ +H ++D+ G P
Sbjct: 282 PKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDH 341
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N +I A GK+D+A+L+ M + G P Y +I
Sbjct: 342 YVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVI 383
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 33/180 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG----- 46
C +A +V+ M NG PN TYT + EA L V++DG
Sbjct: 242 CKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDG 301
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-----NVV------------TL 89
L+PD+ TY ++ G+ G + LL+ + G+ P N++ +
Sbjct: 302 LEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAM 361
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P +T+ VI LC G+++ A+L M + G P +Y++LI L
Sbjct: 362 LVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 421
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LE M+ + + G PDV +YT V++GF K G S + +E ++R ++P+VV
Sbjct: 178 LELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVV----- 232
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++++I ALC +DKA+ +L M ++G +P+ Y +++
Sbjct: 233 -------------TYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIM 273
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 41/189 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA K++ M G PN TY L +A + +++ G+ PD
Sbjct: 491 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPD 550
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN--------------- 94
+ TY ++ G + R+ EL E G + T I LH
Sbjct: 551 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQ 610
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY--------- 142
++D+ R TFN +I AL VG+ +A L +G +P+ Y
Sbjct: 611 NLCLMDLKLEAR--TFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 668
Query: 143 DTLIKKLDQ 151
L+++LDQ
Sbjct: 669 QGLLEELDQ 677
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C D + +D M D+ P++ ++TIL EA ++ + N G KPD
Sbjct: 204 CKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPD 263
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
+ Y +M GFC + + +E + + + E GV P+ +T ++L
Sbjct: 264 CFLYNTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEARMYLK 323
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G+ P T T+ +++ +C G+ AL LL M G P+ Y+TL+ L
Sbjct: 324 TMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGL 379
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA V M + G P+ TY L EA L + + G +PD
Sbjct: 274 FCTLSKGSEAIGVYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEARMYLKTMVDAGYEPD 333
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT++M+G C+ G S + LL E RG PN T+N +
Sbjct: 334 TATYTSLMNGMCRKGESLGALSLLEEMEARGCAPN------------------DCTYNTL 375
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC +DK + L LM G Y TL++ L
Sbjct: 376 LHGLCKARLMDKGMELYELMKSSGVKLETNGYATLVRSL 414
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 29/180 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + +V++ M +NG P+ T I EA +++ + P
Sbjct: 132 CRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPP 191
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTL-IHLHNVID---------- 97
D YTY ++ CK + V E ++E + V P++V+ I + NV +
Sbjct: 192 DTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYL 251
Query: 98 ------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G P +N +++ C + K +A+ + M E G P + Y+TLI L +
Sbjct: 252 VSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQITYNTLIYGLSK 311
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + EA+ +++ M D G P+ TT+ L EA ++ + GL P
Sbjct: 346 CLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSP 405
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI- 98
DVYT+ +++ CKVG + + L E G TP+ VT + L N +D+
Sbjct: 406 DVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLL 465
Query: 99 -----GHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
PR T+T+N +I ALC +I++A + M G S ++TLI L
Sbjct: 466 NEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGL 522
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVK----NDGLKPDV 51
C + A +++ M +G P+ TT+T L + E + VK G P
Sbjct: 208 CRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTG 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T +++G+CK+GR + + + + I G P+ VT + H V+D+
Sbjct: 268 VTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDL 327
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
GH P T+N VI L G++D+A ++ M + G +P T ++TLI L Q
Sbjct: 328 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQ 385
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ A +++ M NG + TY I EA E+ + G+
Sbjct: 453 CSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSA 512
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIH------LHNVIDI--- 98
T+ ++DG CK R ++ EL+ + ++ G+ PN +T L H + DI
Sbjct: 513 VTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILET 572
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +T+ +I LC G+ AL LL M G P+ Y+ +I+ L
Sbjct: 573 MTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 627
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 42/166 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + + +A +++ M NG+ DV TY +++G
Sbjct: 557 YCKQGNIKKAADILETMTANGFEI------------------------DVVTYGTLINGL 592
Query: 62 CKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVID----------IGHIPRT 104
CK GR+ ++LL +G+ P + +L +N+ D +G P
Sbjct: 593 CKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDA 652
Query: 105 ITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+ V ++LC G G I +A L M G +P + + L + L
Sbjct: 653 LTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 698
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 21/117 (17%)
Query: 34 EAYEMLMN-VKND--GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
+A ++++N + ND G++ D + +++ + + + + NE RG+ P+VVTL
Sbjct: 142 DAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTL- 200
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
N +I+ALC ++ A+L+L M HG P T + TL++
Sbjct: 201 -----------------NTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQ 240
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 28/167 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + D+G+ PNV TY +I EA +++ GL P+V YTA++
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALV 545
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHN-------VIDIGHI 101
DG CK G NE ++L NE + +G++ + V +LH+ +ID G
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQ 605
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ I C + + +A + M HG P R +Y+ LI K
Sbjct: 606 LDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISK 652
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V+ M G N YT L +A +L +KN GL+ D+
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
Y A++ G C V + +E LL + E G+ PN + + L
Sbjct: 434 SLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQK 493
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P IT+ +I LC G ID+A+ M + G P+ Y L+ L
Sbjct: 494 ILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGL 548
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + EA+ ++ M ++G PN YT + EA ML + + G +P+V
Sbjct: 444 CNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNV 503
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY A++DG CK G +E + N+ + G+ PNV + ++
Sbjct: 504 ITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ------------------AYTALV 545
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC G +++A+ L M G + +Y L+
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C+C A M G NV T++ + EA ++ ++ G+
Sbjct: 267 CFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMAL 326
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ +TYT ++DG CK GR ++ + LL+E + +GV NVV T+
Sbjct: 327 NEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV------------------TYTV 368
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC K+ +A +L +M + G + LY TLI
Sbjct: 369 LVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLI 405
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + EAR + M + G P+V T+ L E +++ ++ G K DV
Sbjct: 199 CKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADV 258
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNV 95
TY A+++ FCK GR GV NVVT + L
Sbjct: 259 VTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQ 318
Query: 96 IDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G T+ +I C G++D A++LL M G + Y L+ L
Sbjct: 319 MRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ + M G + YT L +A+ + + + GL+ D+
Sbjct: 549 CKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL 608
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+ YT + GFC + E E+ +E I G+ P+
Sbjct: 609 FCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ + NG P + TY L EA ++L + ++G PDV TYT+++
Sbjct: 52 EAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 111
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT------------- 104
DG K RS E +L E RG+ + V L ++ G IP+
Sbjct: 112 DGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV 171
Query: 105 ---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T + +I LC G+I A+ + M G P+ +Y LI L
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 219
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTA 56
+A + NG ++ TYT I EA ++ + +G P + TY A
Sbjct: 15 LIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNA 74
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIG 99
+++G CK+GR E ++LL + ++ G TP+VVT L + G
Sbjct: 75 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRG 134
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ + +I+ L GKI +A + M G +P T+I L
Sbjct: 135 LALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGL 184
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 65/172 (37%), Gaps = 28/172 (16%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
K FEA K+ M G + YT L +A + + + G PDV
Sbjct: 116 KKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVV 175
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNV 95
T + ++DG CK GR + + RG+ PN V LIH L +
Sbjct: 176 TLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM 235
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P TIT+N +I LC G + A M E G P Y+ LI
Sbjct: 236 KKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILIS 287
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ M G PN Y+ L A EML +K PD
Sbjct: 185 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 244
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TY ++DG CK G +E +E G P+V T I + G+
Sbjct: 245 ITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 304
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ +I LC ++ KA L M E G P +Y +L+ L
Sbjct: 305 MSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGL 359
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G KPDVYTY ++ GFCK G ++ + ++ +PNVVT
Sbjct: 274 GCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKA 333
Query: 90 -IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
++ ++ + G P + +++++ LC GK++ +L M G S+T
Sbjct: 334 SLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQT 385
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+++A+ + +G D++TYT ++D K + E + L+ + G TP +
Sbjct: 15 LIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIA---- 70
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T+N ++ LC +G++++A+ LL + ++G P Y +LI L +
Sbjct: 71 --------------TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 116
Query: 152 Q 152
+
Sbjct: 117 K 117
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 26/148 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A V D M + PNV TY L +A ++K G PD
Sbjct: 289 FCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPD 348
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---------------VVTLIHLHNV 95
+ Y++++DG CK G+ L +E GV + V + L N
Sbjct: 349 SFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNA 408
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKA 123
I +P +N++I AL GK+++
Sbjct: 409 IRKEGMPHPYAYNSIISALIKSGKVNEG 436
>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 401
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M +G P+ TY + EA L +++DG++PDV
Sbjct: 127 CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDV 186
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 187 VTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDL 246
Query: 99 ---------------------------------------GHIPRTITFNNVIQALCGVGK 119
G P +T+ VI LC G+
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 306
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ A+L M + G P +Y++LI L
Sbjct: 307 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSL 336
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYE----------MLMNVKNDGLKPDV 51
C EARK+ D M G P++TTY T+L+ Y +L + +G+ P+
Sbjct: 197 CKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 256
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
Y ++ ++ + K + E M + ++ ++G+ PN VT +++
Sbjct: 257 YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ 316
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ID G P +I +N++I +LC K +KA L M + G S ++++I
Sbjct: 317 MIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 368
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVV---TLIH-------LHNVI 96
PDV++Y +++G C RS E +ELL+ + G P+VV T+I+ L ++
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKML 108
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
D P +T+N++I ALC +DKA+ +L M + G +P Y++++
Sbjct: 109 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 158
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTY-TILEAYEM---LMNVKNDGLKPDVYTYTA 56
C++N EA +++ M D+G P+V +Y T++ + L + + + P+V TY +
Sbjct: 62 CDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNS 121
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIG 99
++ CK ++ ME+L ++ GV P+ +T ++ L + G
Sbjct: 122 IIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG 181
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +T+N+++ LC G+ +A + M + G P T Y TL++
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M D G P+ Y L +A E+ + + + G+
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 361
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ +++D CK GR E +L + + GV P+++TL
Sbjct: 362 IFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITL 399
>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
Length = 374
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
+C D EAR++ M + G P+V TY +I EA ++ G PD
Sbjct: 223 HCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPD 282
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYTY +++ G C G+ + ++L E +RG PNVV + +
Sbjct: 283 VYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVV------------------AYTAL 324
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ + A L M + G IP +LY L+ L
Sbjct: 325 ISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 363
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDG 60
CY + D +++++ M + G V T ++L +G++P+ TY +++G
Sbjct: 58 CYVRQKDDGRVQEILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLING 117
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH---NVID-----------IGHIPR 103
FCK+G+ LL + +GV N + T+I + ++D +G
Sbjct: 118 FCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELD 177
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
T+N + LC V ++D+A LL +M E G +P+ Y TLI
Sbjct: 178 IYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLIS 221
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 74/197 (37%), Gaps = 63/197 (31%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN--------------------- 41
KV+D NG PN TY +L EA EML+
Sbjct: 94 KVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGY 153
Query: 42 ---------------VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
++ G++ D+YTY + G C+V R +E LL+ IE GV PN
Sbjct: 154 CRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNY 213
Query: 87 V---TLIHLH--------------NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
V TLI +H + + G P +T+N +I G I +A
Sbjct: 214 VTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKE 273
Query: 130 MYEHGKIPSRTLYDTLI 146
M + G +P Y +L+
Sbjct: 274 MEKKGFVPDVYTYASLV 290
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +F +A K + M G PNV TYT + A+ ++ + G PD
Sbjct: 376 CKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDS 435
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTIT--FN 108
TY ++DGFCK+GR +E +LL+E + +PN+ L + D G + T+ F
Sbjct: 436 VTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFE 495
Query: 109 ---------------NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++I LC G++D+A + M G P T Y+ LI L
Sbjct: 496 QSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL 551
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ M +G+ PN YT L EA + + G +PDV
Sbjct: 306 CKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDV 365
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
T+T ++DG CK G + + E + G PNVVT +
Sbjct: 366 ITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKG 425
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P ++T+ ++ C +G++D+A LL + + P+ LY +L+K L
Sbjct: 426 MIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGL 480
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA KV+D M P TY IL A E+ + G +P+ YT+++
Sbjct: 278 EALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLI 337
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHI---------------- 101
GF K GR E L +E +E G P+V+T + + + G+
Sbjct: 338 HGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCK 397
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +IQ L +G++ A ++ M HG P Y L+
Sbjct: 398 PNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLL 442
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 31/160 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKP 49
C EA ++ M G P+ TTY IL A+ +L +++ G P
Sbjct: 517 CKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLP 576
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D TYT + G CK+G + +++L EA RG +VV +
Sbjct: 577 DAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV------------------AYTA 618
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC G++D+A+ L M G P Y +I L
Sbjct: 619 LCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGL 658
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ EA E+ ++ G PD Y ++DG K G + E +++L+ + +
Sbjct: 241 VKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC--------- 291
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P +T+ ++ +LC G +++A L +M G P+ +Y +LI
Sbjct: 292 ---------VPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLI 337
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 33/178 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A K+++ G++ +V YT L A + + G PD
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDA 648
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGH---- 100
Y +++G K + + + +E I +G P V T L H NV + H
Sbjct: 649 AAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEG 708
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP----SRTLYDTLIK 147
+ + ++ +I C K+D AL L M G +P S +L+D L++
Sbjct: 709 MLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 29/174 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+ ++ + + + M G PN ++ IL +A +K KPD++T
Sbjct: 132 EKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHT 191
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPN--------VVTLIHLHNVID-------- 97
+ ++D CK G + E+ +E + G P V TL+ V +
Sbjct: 192 FLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQM 251
Query: 98 --IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P I +N +I L G +AL +L M +P+ Y L+ L
Sbjct: 252 EKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSL 305
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 30/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-LKPDVYTYTAV 57
+A K D M G P V TYT L EA+ + G L V Y A+
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDAL 725
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ GFCK + + ++L + I RG P VT L F+ ++++
Sbjct: 726 IHGFCKALKVDAALKLFEDMISRGNVPTAVTSASL--------------FDGLVRS---- 767
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GK +KA LL M G P + ++ L
Sbjct: 768 GKTEKAQELLQEMAAGGSPPHAATFTAILDGL 799
>gi|226493958|ref|NP_001147934.1| fertility restorer [Zea mays]
gi|195614680|gb|ACG29170.1| fertility restorer [Zea mays]
Length = 563
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 30/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILE------------AYEMLMNVKNDGLKPDVYTYTAV 57
EAR V D M G PN +++ IL AY+ + ++ GL PDV T++ +
Sbjct: 113 EARSVFDGMLAAGVAPNASSFNILVKLYAWRTADFHLAYDQIHAMRRHGLLPDVGTFSTL 172
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ G C+ G+ +E +L+ ++ G P ++H T+ ++Q C
Sbjct: 173 VTGLCRAGKLDEAWGVLDWMLQEGCRP----MVH--------------TYTPIVQGYCRQ 214
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+I++A L+ M E G P+ Y+ LI+ L
Sbjct: 215 GQIEEATNLIGFMEEAGCPPNAVTYNVLIRAL 246
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 29/169 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA +I +M + G PN TY +L E ++L ++ G +
Sbjct: 211 YCRQGQIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETKGHELS 270
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
TY MD K G + E ++ +G+ P TL + N +
Sbjct: 271 TVTYNIYMDALGKKGMAKEALKQFEALQCKGLHPTAFTLSIILNCLCCTSRFSQAISILE 330
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-SRTL 141
D+ + +N V+ LC +G+ L LL M + +P +RTL
Sbjct: 331 RSTDLNFCAAVVAYNTVMSRLCDMGRWPAVLELLADMIKKCIVPNTRTL 379
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 28/146 (19%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
DF A I M +G P+V T++ L EA+ +L + +G +P V+TYT
Sbjct: 146 DFHLAYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYT 205
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDI 98
++ G+C+ G+ E L+ E G PN VT LI L +
Sbjct: 206 PIVQGYCRQGQIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETK 265
Query: 99 GHIPRTITFNNVIQALCGVGKIDKAL 124
GH T+T+N + AL G +AL
Sbjct: 266 GHELSTVTYNIYMDALGKKGMAKEAL 291
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------- 89
+++++ + G+ P V Y +++ + GR+ E + + + GV PN +
Sbjct: 81 DLMLSTSSAGVPPSVLCYNTLLNALVEAGRAVEARSVFDGMLAAGVAPNASSFNILVKLY 140
Query: 90 ------IHL-----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
HL H + G +P TF+ ++ LC GK+D+A +L M + G P
Sbjct: 141 AWRTADFHLAYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPM 200
Query: 139 RTLYDTLIKKLDQQ 152
Y +++ +Q
Sbjct: 201 VHTYTPIVQGYCRQ 214
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C EA V+D+M G P V TYT I EA ++ ++ G P+
Sbjct: 177 CRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQGYCRQGQIEEATNLIGFMEEAGCPPNA 236
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY ++ C R EV ++L E +G + VT L
Sbjct: 237 VTYNVLIRALCDDARFAEVEQVLAEIETKGHELSTVTYNIYMDALGKKGMAKEALKQFEA 296
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T + ++ LC + +A+ +L + + Y+T++ +L
Sbjct: 297 LQCKGLHPTAFTLSIILNCLCCTSRFSQAISILERSTDLNFCAAVVAYNTVMSRL 351
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 26/169 (15%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K + + G HP T +I+ +A +L + V Y VM
Sbjct: 289 EALKQFEALQCKGLHPTAFTLSIILNCLCCTSRFSQAISILERSTDLNFCAAVVAYNTVM 348
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN-------------VIDIGHIPRT 104
C +GR V+ELL + I++ + PN TL I +H+ V + G
Sbjct: 349 SRLCDMGRWPAVLELLADMIKKCIVPNTRTLNIFIHSLCIADKLSVAKKLVYNQGFPANA 408
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKLDQQ 152
+T+N +I + G+ +A + M E I P Y ++ L +Q
Sbjct: 409 VTYNTLIHSFYLRGEAYEADNMFAYMTEVANIAPDEVTYTIMVDGLCRQ 457
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEM------LMNVKNDGLK 48
C + A+K++ ++ G+ N TY L EAYE + V N +
Sbjct: 387 CIADKLSVAKKLV---YNQGFPANAVTYNTLIHSFYLRGEAYEADNMFAYMTEVAN--IA 441
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79
PD TYT ++DG C+ G+ ++ + E++
Sbjct: 442 PDEVTYTIMVDGLCRQGKFDKATDFFKESLR 472
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+++ M G+ +V TYT L EA +L +K + ++P+V
Sbjct: 202 CRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNV 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDG CK G S++ M+LL E +++ H+P +T++ +I
Sbjct: 262 FTYSSLMDGLCKGGHSSQAMQLL-EVMDKK-----------------HHLPNMVTYSTLI 303
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC K+ +A+ +L M G P+ LY +I L
Sbjct: 304 NGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGL 341
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-- 88
T+ A + + N G +PD YTY +++G C++G +E EL E ++G + +VVT
Sbjct: 171 TVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYT 230
Query: 89 -LIH---LHNVID--IGHI---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
LIH N +D IG + P T+++++ LC G +A+ LL +M +
Sbjct: 231 SLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKK 290
Query: 134 GKIPSRTLYDTLIKKL 149
+P+ Y TLI L
Sbjct: 291 HHLPNMVTYSTLINGL 306
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++++ M + PN+ TY+ L EA E+L ++ GLKP+
Sbjct: 272 CKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNA 331
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---IHLHNVIDIG-----HIPR 103
Y ++ G C G E ++E + G++PN + + +HN++ G PR
Sbjct: 332 GLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPR 391
Query: 104 TI----------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TF+ +++ C G + KA +L M G IP +++ +I
Sbjct: 392 AFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVIG 451
Query: 148 KL 149
L
Sbjct: 452 GL 453
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N +A +++D M G PN+ T+ IL + E+ + G+ D
Sbjct: 476 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 535
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI---- 105
TY ++ GFC++G+ N EL E + R V PN+VT I L + D G + +
Sbjct: 536 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE 595
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C K+D A L + G P Y+ +I L
Sbjct: 596 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 651
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN + + K++ M +PNV T+++L EA E+ + + G+ PD
Sbjct: 406 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 465
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH---NVIDIGH---- 100
TYT+++DGFCK ++ ++++ + +G PN+ T LI+ + N ID G
Sbjct: 466 TITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 525
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ T+T+N +IQ C +GK++ A L M P+ Y L+ L
Sbjct: 526 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 581
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI---- 90
A+ + ++ G+ ++ TY ++ GFC GR ++ +LL + I+R + PNVVT
Sbjct: 380 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 439
Query: 91 ------------HLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
LH +I G P TIT+ ++I C +DKA ++ LM G P
Sbjct: 440 SFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 499
Query: 138 SRTLYDTLI 146
+ ++ LI
Sbjct: 500 NIRTFNILI 508
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C A + + GY PN T++ L EA E++ + G KP
Sbjct: 230 CFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 289
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIP------ 102
D+ T +++G C G+ E M L+++ +E G PN VT + NV+ G
Sbjct: 290 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 349
Query: 103 ----------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ +I LC G +D A L M G + Y+ LI
Sbjct: 350 RKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI 403
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P V ++ + K + + V+ L + +G+ N+ TL + N
Sbjct: 184 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 243
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I +G+ P TITF+ +I LC G++ +AL L+ M E G P +TL+ L
Sbjct: 244 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 301
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A+++ ++ G+KP V TY ++ G CK G +E ELL +E
Sbjct: 624 DAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA-ELLFRKMEED------------ 670
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
GH P T+N +I+A G G K++ L+
Sbjct: 671 -----GHAPDGWTYNILIRAHLGDGDATKSVKLI 699
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNV----------KNDGLKPD 50
+C E + V M G P+V TY ++++ Y ++ V G+ PD
Sbjct: 157 FCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPD 216
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y +++GFCK+ + ++ M L NE + + PNVVT L +
Sbjct: 217 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVD 276
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G P +T+N++I AL ++DKA+ L+ + G PS Y LI L
Sbjct: 277 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGL 332
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G PNV TY+ L +A ++ + + +KPD
Sbjct: 88 CKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDG 147
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HNV 95
YT+ ++DGFCK + E + +++G+ P+VVT L N
Sbjct: 148 YTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNT 207
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G + P ++N +I C + K+DKA+ L M+ IP+ Y++LI L +
Sbjct: 208 MAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKS 265
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A D + G+H + +Y L A ++L V ++ +
Sbjct: 18 CLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNA 77
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
Y V+ G CK N+ +L +E + +G++PNVVT I L N
Sbjct: 78 VMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNK 137
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I + +I P TFN ++ C K+ + + +M + G IP Y++L+
Sbjct: 138 IILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLV 189
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++D M D G PN+ TY + +A ++ K+ G++P +YTYT ++D
Sbjct: 271 ALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILID 330
Query: 60 GFCKVGRSNEVMELLNE 76
G CK GR + + +
Sbjct: 331 GLCKGGRLKDARNIFED 347
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+++ M P V TY L A +L + + G+KP+V
Sbjct: 202 CRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNV 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDG CK G S+ +ELL+ + R H+P IT++ ++
Sbjct: 262 FTYSSLMDGHCKSGCSSRALELLDMMVSR------------------RHLPNMITYSTLV 303
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC GK+ +A+ +L M G P LY +I
Sbjct: 304 HGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKII 338
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 34/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +++D M + PN+ TY+ L EA E+L +K GL+PD
Sbjct: 271 HCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPD 330
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---IHLHNVIDIG----HIPR 103
Y ++ GFC + + +E L+E + G++PN +T + +HN++ G H R
Sbjct: 331 AGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNR 390
Query: 104 TI----------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TF++++ C G + KA L+ M G IP ++ ++
Sbjct: 391 AFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVV 449
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 29/174 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVY 52
+N A + YM + G P+V + +L A + + N G P Y
Sbjct: 133 ENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSY 192
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNV 95
TY ++ G C++G+ E EL E + +P VVT LIH L +
Sbjct: 193 TYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEM 252
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+++++ C G +AL LL +M +P+ Y TL+ L
Sbjct: 253 ASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGL 306
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A + M P+V Y L EA E+L ++ GLKPD
Sbjct: 335 FCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 394
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY+ ++ +CK ++ EL + +E+GV P+ +T L
Sbjct: 395 VVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFK 454
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
N+I +G P T+ ++I C G +++AL L M + G +P Y LI L +
Sbjct: 455 NMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSK 512
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D A ++ M + G P+ TY+ L +A+ + N+ GL+PD
Sbjct: 405 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPD 464
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYT+++DG CK G + L ++ ++ GV P+VVT ++ +
Sbjct: 465 EFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVT------------------YSVL 506
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L + +A LLF +Y IP+ T YD L+
Sbjct: 507 INGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALM 542
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M D G PN+ T+ + +A ++ + +GL PD +Y ++
Sbjct: 204 AERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVG 263
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIP---------------- 102
G+CK G S+E + + E ++G+ P+VVT L H + G++
Sbjct: 264 GYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQM 323
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+TF +I C G +D ALL + M + PS Y+ LI
Sbjct: 324 NEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALI 367
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+ D M +G PNV TY IL EA +L +++ G P+V TY ++
Sbjct: 134 ARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 193
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F + G + L+ ++ G+ PN+V TFN+++ +C GK
Sbjct: 194 AFFRAGEVDGAERLVGMMLDGGLKPNLV------------------TFNSMVNGMCKAGK 235
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ A + M G P Y+TL+
Sbjct: 236 MEDARKVFDEMMREGLAPDGVSYNTLV 262
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKND-GLKPDV 51
C + EA ++ M G PNV TY L + E L+ + D GLKP++
Sbjct: 161 CGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNL 220
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI--- 98
T+ ++++G CK G+ + ++ +E + G+ P+ V+ L H + +
Sbjct: 221 VTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAE 280
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P +TF ++I +C G ++ A+ L+ M E G + + LI
Sbjct: 281 MTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALI 332
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A ++ M + G N T+T L +A + ++ +KP V
Sbjct: 301 CKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSV 360
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y A+++G+C VGR +E ELL+E +G+ P+VVT ++ +I
Sbjct: 361 VCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT------------------YSTII 402
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
A C A L M E G +P Y +LI+ L ++
Sbjct: 403 SAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEE 443
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 44/174 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLM---------- 40
+C + + A + D M G P+V TY++L EA ++L
Sbjct: 475 HCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPA 534
Query: 41 NVKNDGL-----KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV 95
N K D L K ++ + A++ GFC G NE ++ ++R + +++V
Sbjct: 535 NTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDG----SVYSV 590
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ GH C G + KAL M + G P+ T +LI+ L
Sbjct: 591 LIHGH--------------CRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGL 630
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + ++ G++PD
Sbjct: 150 FCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPD 209
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E ++ G+ PN VT L
Sbjct: 210 VYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 269
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P +T+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 270 QMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 322
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A+ +ID M G P+ TYT L A+E + + ++ D
Sbjct: 291 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDD 350
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P +IG T+ +I
Sbjct: 351 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------------EIG------TYTMII 392
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + L+ M G +PS Y+ L+
Sbjct: 393 NEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLM 427
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE + G +Y + +M FCK G
Sbjct: 105 FDTCRKVLEHLMKLKYFKLVWGF-----YEESLEC---GYPASLYFFNILMHSFCKEGEI 156
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I +G + P T++ +
Sbjct: 157 RLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVL 216
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D L M + G +P+ + TLI
Sbjct: 217 INGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLI 252
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A ++ M G P+V Y L A E++ ++ +KPD
Sbjct: 196 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 255
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY+ ++ G+CKVG + +L + +++GV P+ +T L
Sbjct: 256 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFE 315
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
N++ +G P T+ +I C G ++KAL L M G +P Y LI L +
Sbjct: 316 NMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 373
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C + A +V+ M + G PN+ T+ + A ++ + +GL P
Sbjct: 55 FCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP 114
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT---- 104
DV +Y ++ G+CKVG +E + + +E +RG+ P+VVT L H G++ +
Sbjct: 115 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 174
Query: 105 ------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+TF +I C G +D ALL + M + G PS Y+ LI
Sbjct: 175 AQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALI 228
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M G P+ TY+ L +A E+ N+ G++PD
Sbjct: 266 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 325
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYT ++DG CK G + + L +E I +GV P+VV T++ +
Sbjct: 326 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV------------------TYSVL 367
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L + +A LLF +Y +P YD L+
Sbjct: 368 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC E+ V M G P+V T+T L +A ++ ++ GL+ +
Sbjct: 126 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 185
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI-------- 101
T+TA++DGFCK G ++ + + E + G+ P+VV L N +G +
Sbjct: 186 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 245
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T++ +I C VG +D A L M + G +P Y +LI+ L ++
Sbjct: 246 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE 304
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 31/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKP 49
C + EA V+ M G PN TY L E LM + + KP
Sbjct: 21 CARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNA-KP 79
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI- 98
++ T+ ++++G CK GR ++ +E + G+ P+VV TL+ LH + +
Sbjct: 80 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVF 139
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P +TF ++I A C G +++A+ L+ M E G + + LI
Sbjct: 140 SEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 193
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G PNV TY IL EA ++ +++ G P+ TY ++ FC+ G
Sbjct: 1 MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60
Query: 67 ---SNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTIT 106
+ V+ L+ E E PN+VT + N ++ G P ++
Sbjct: 61 LDGAERVVSLMRE--EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVS 118
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N ++ C VG + ++L + M + G +P + +LI
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 158
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A+ V D + G P+V ++ L E + + ++ G++PD
Sbjct: 146 FCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ L +E ++ G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYR 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H I A + ++ GL+P V ++ +M+G+ K+G +E L +
Sbjct: 137 YFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSV 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M +P Y+TLI
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLI 283
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A+ +ID M G P+ TYT L
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKP++ TYT +++ FCK G +LL E
Sbjct: 347 VAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G PNVVT
Sbjct: 407 MQRDGYLPNVVT 418
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKVI+++ Y V + YE + G +Y + +M FCK G
Sbjct: 101 FDTCRKVIEHLMKLKYFKLVWGF-----YEESLEC---GYPASLYFFNILMHNFCKGGEI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ + + G+ P+VV+ L N I IG + P T++ +
Sbjct: 153 XLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M ++G +P+ + TLI
Sbjct: 213 INGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLI 248
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A +++ + GLKPD
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G E I+ + + V LI L
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ +G P T+ +I C G + LL M G +P
Sbjct: 371 EMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLP 414
>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
Length = 526
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M +G P+ TY + EA L +++DG++PDV
Sbjct: 127 CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDV 186
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 187 VTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDL 246
Query: 99 ---------------------------------------GHIPRTITFNNVIQALCGVGK 119
G P +T+ VI LC G+
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 306
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ A+L M + G P +Y++LI L
Sbjct: 307 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSL 336
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL EA + ++ GL P+
Sbjct: 231 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 290
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY V+D CK GR + M ++ +ID G P +I +N++
Sbjct: 291 AVTYGTVIDVLCKSGRVEDAM------------------LYFEQMIDEGLRPDSIVYNSL 332
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +LC K +KA L M + G S ++++I
Sbjct: 333 IHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 368
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVV---TLIH-------LHNVI 96
PDV++Y +++G C RS E +ELL+ + G P+VV T+I+ L ++
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKML 108
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
D P +T+N++I ALC +DKA+ +L M + G +P Y++++
Sbjct: 109 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 158
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTY-TILEAYEM---LMNVKNDGLKPDVYTYTA 56
C++N EA +++ M D+G P+V +Y T++ + L + + + P+V TY +
Sbjct: 62 CDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNS 121
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIG 99
++ CK ++ ME+L ++ GV P+ +T ++ L + G
Sbjct: 122 IIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG 181
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +T+N+++ LC G+ +A + M + G P T Y TL++
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M D G P+ Y L +A E+ + + + G+
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 361
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI-------GHIPRT 104
+ +++D CK GR E +L + + GV P+++TL D+ G +P
Sbjct: 362 IFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRNDEAKDLFVAFSSNGLVPNY 421
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ + + + G G +++ L M ++G + + ++++L Q+
Sbjct: 422 WTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQR 469
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 30/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYE-----------MLMNVKNDGLKPD 50
C EARK+ D M G+ PN TY T+L Y + M V+N G++PD
Sbjct: 319 CKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRN-GIQPD 377
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
Y + ++ + K G+ ++ M L ++ +G+ P+ VT +
Sbjct: 378 HYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFG 437
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P + F N+I LC K DKA L M G P+ ++TL+ L
Sbjct: 438 RLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHL 493
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+ M NG PN T+ L +A + + DG++PDV+TY +M
Sbjct: 256 KAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLM 315
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI----GHI 101
CK GRS E ++ + ++RG PN T L+ +H+++D+ G
Sbjct: 316 GYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQ 375
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P FN +I GK+D A+LL M G P Y ++ L
Sbjct: 376 PDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 36/162 (22%)
Query: 3 CNKNDFFEARKV-IDYMFDNGYHPNVTTYTIL-----------EAYEML--MNVKND--- 45
C+K EA + + M G PNV +YTIL +A +L M V +D
Sbjct: 137 CDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRG 196
Query: 46 GLKPDVYTYTAVMDGFCKVGRS-NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
G PDV +Y V++G + GR + L ++ +++G++P+VVT
Sbjct: 197 GYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVT---------------- 240
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N++I AL +DKA ++L M ++G +P+R +++L+
Sbjct: 241 --YNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLL 280
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-------VTTYT----ILEAYEMLMNVKNDGLKPD 50
Y + + ++D M NG P+ + TYT + +A + ++ GL PD
Sbjct: 353 YATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPD 412
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------------- 91
TY VMD C VG+ ++ M I G+TP+ V LIH
Sbjct: 413 TVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAV 472
Query: 92 -----------------LHNVIDIGHIPRT----------------ITFNNVIQALCGVG 118
L+++ G + R IT+N +I C G
Sbjct: 473 EMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHG 532
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K+D+A LL M G P+ Y+T+I
Sbjct: 533 KVDEAAKLLEGMVLDGVKPNEVTYNTMI 560
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ +A V M +G P+V TY L EA ++ ++ G KP+
Sbjct: 283 YCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPN 342
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVID------- 97
TY ++ G+ G ++ LL+ + G+ P+ ++ H +D
Sbjct: 343 SATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFS 402
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+T+ V+ ALC VGK+D A+ + G P ++ LI L
Sbjct: 403 KMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGL 458
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A+ + D M +V TY L EA ++L + DG+KP+
Sbjct: 494 CKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNE 553
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY +++G+CK GR + L + +GV P +VT
Sbjct: 554 VTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVT 590
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 38/184 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA K+++ M +G PN TY + +A+ + + + G+ P
Sbjct: 528 YCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPG 587
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG----------- 99
+ TY+ ++ G + R+ EL I+ G+ ++ T +N+I +G
Sbjct: 588 IVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGT----YNIILLGLCQNNCTDDAL 643
Query: 100 -----------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
H+ TFN +I AL G+ D+A L + G +P+ Y ++K
Sbjct: 644 RIFQNLYLIDFHLENR-TFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKS 702
Query: 149 LDQQ 152
L +Q
Sbjct: 703 LIEQ 706
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY----EMLMNVKN-------DGLKPDV 51
C ++ + +A ++ M G PN + L + M+ KN ++ DV
Sbjct: 459 CARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDV 518
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++DG+C G+ +E +LL + GV PN +T+N +I
Sbjct: 519 ITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPN------------------EVTYNTMI 560
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C G+I+ A L M G P Y T+++ L Q
Sbjct: 561 NGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQ 600
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMF-----DNGYHPNVTTYTIL------------EAYEMLMNVKND 45
C++N +A ++ M GY P+V +Y + AY + + +
Sbjct: 173 CDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQ 232
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------- 91
GL PDV TY +++ K ++ +L ++ G PN +T L+H
Sbjct: 233 GLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDA 292
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P T+N ++ LC G+ +A + M + G P+ Y TL+
Sbjct: 293 IGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLL 350
>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
Length = 709
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA+++I M G P+V TY+ + +A +M+ ++ +G KP+
Sbjct: 349 FCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPN 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
T+TA+++G CKVG+S+E ELLN++ E TP+ +T ++H +
Sbjct: 409 TVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVM 468
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
++ G P + N +I ALC K +A
Sbjct: 469 QMLQKGFFPTAVEINLLIHALCKEQKPARA 498
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA E++ + + G +PDV TY+AV+DGFC++G ++ +++ + G PN
Sbjct: 357 EAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPN-------- 408
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+T ++ LC VGK +A LL E PS Y ++
Sbjct: 409 ----------TVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIM 451
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D G P+ TY +L EA L + + D Y+A++ FC GR +
Sbjct: 297 DAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMS 356
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
E E++ E I +G P+VV T++ V+ C +G++D+A ++
Sbjct: 357 EAKEIIGEMISKGCRPDVV------------------TYSAVVDGFCRIGELDQARKMMK 398
Query: 129 LMYEHGKIPSRTLYDTLIKKL 149
MY++G P+ + L+ L
Sbjct: 399 HMYKNGCKPNTVTHTALLNGL 419
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E ++ G+ PDV TY ++ G C R E +E++ ++ G P+ ++ +
Sbjct: 216 KALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVM 275
Query: 94 NVI------------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ + D G P IT+N +I L G D+A L FL GK
Sbjct: 276 SFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEA--LTFLRESEGK 333
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A +L ++ DG PD+ ++ GR ++ +E GV P+VVT
Sbjct: 182 AMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVT------ 235
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I+ LCG +I +AL ++ M ++G P + Y T++ L
Sbjct: 236 ------------YNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFL 278
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 33/138 (23%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+ + D A ++D M+ HP+V TYT + EA ++ + N GL P
Sbjct: 524 FSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNRGLLPT 583
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAI-ERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY V+ +C+ G +++ LL++ + ++G + +N
Sbjct: 584 PVTYRTVIHRYCEKGAVEDLLNLLDKMLTKQGFSS---------------------AYNQ 622
Query: 110 VIQALCGVGKIDKALLLL 127
VI+ LC GK+ +A LL
Sbjct: 623 VIEKLCAFGKLSEAYNLL 640
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G+ PD
Sbjct: 149 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPD 208
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 209 VYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYK 268
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 269 RMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 321
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + DF A ++ M P++ TY L +A++++ + GLKP
Sbjct: 255 CKNGRVDF--AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 312
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------L 92
D +TYT ++DG CK G + E I+ + + V LI L
Sbjct: 313 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKML 372
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T T+ +I C G + K LL M +G PS Y+ L+
Sbjct: 373 REMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 426
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 104 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 155
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGH----------------IPRTITFNNV 110
+ + + G+ P+VV+ L N I +GH +P T++ +
Sbjct: 156 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVL 215
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G IP+ + TLI
Sbjct: 216 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 251
>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61400-like [Glycine max]
Length = 498
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKNDG-LKPDVYTYTAVM 58
C C + DF A+KV D M + G PNV Y + EA + ++ G + P++YTY +M
Sbjct: 48 CCCAQGDFSNAQKVFDEMLERGIEPNVVIYGQMGEAEGVFGRMRESGVVTPNLYTYKTLM 107
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGH----------------I 101
DG+ +G V L + ++ G+ P+VVT L +V+ +G +
Sbjct: 108 DGYSMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVV 167
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +N++I C G + +A+ L M G Y+ LIK L
Sbjct: 168 PNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGL 215
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 38/183 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A +V M + PNV T++IL A + + G+ PDV
Sbjct: 251 CKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDV 310
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TYTA++DG CKVG + E L E ++ G++PN+ T+ + ++ G
Sbjct: 311 VTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLE 370
Query: 102 -----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
P ++ + +IQ LC G I KA M +G P +Y T
Sbjct: 371 KTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVT 430
Query: 145 LIK 147
+++
Sbjct: 431 MLQ 433
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D EA + M G +V TY IL EA ++ + + +
Sbjct: 180 YCKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFAN 239
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ V+DG CK+G + +E+ ++ E + PNV ITF+ +
Sbjct: 240 SVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNV------------------ITFSIL 281
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C G + A+ L M G +P Y LI
Sbjct: 282 IDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALI 317
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H V T +E+ +++ + P V TY +M+ C G + ++ +E +ERG+
Sbjct: 12 HGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKVFDEMLERGIE 71
Query: 84 PNVVTLIHLHNVIDI-GHI-------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
PNVV + + G + P T+ ++ +G + + L M + G
Sbjct: 72 PNVVIYGQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGL 131
Query: 136 IPSRTLYDTLIKKLDQ 151
P + TLI L +
Sbjct: 132 YPDVVTFATLIDVLRK 147
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A + D M G+ PNV TY L A +L +++ +PDV
Sbjct: 150 CVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDV 209
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-LHNVIDIGHI------ 101
YT+++D CK + E L ++ + +G++P++ T LIH L N+ + H+
Sbjct: 210 VVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQ 269
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + F+ V+ ALC GKI +A ++ +M G P+ Y+ L+
Sbjct: 270 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALM 321
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V+D M G PNV TY L EA ++ + ++G P+V
Sbjct: 290 CKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNV 349
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y +++G+CK+ R ++ L E ++ + PN T+T+N ++
Sbjct: 350 ISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN------------------TVTYNTLM 391
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTLIKK 148
C VG++ A+ L M HG+IP R L D L KK
Sbjct: 392 HX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKK 431
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G P++ TYT L +L + N + PDV
Sbjct: 220 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 279
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
++ V+D CK G+ E ++++ I RGV PNVVT L+ H
Sbjct: 280 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 339
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G+ P I++N +I C + ++DKA L M + IP+ Y+TL+
Sbjct: 340 MVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLM 391
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M +G P++ TY IL EA +L ++ + PD+
Sbjct: 394 CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDI 453
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT V+DG C+ G ++ + +G+ PNV RT T +I
Sbjct: 454 QIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNV----------------RTYTI--MI 495
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G +D+A L M +G P Y+T+ + L Q
Sbjct: 496 NGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 535
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ PDVYT +++ FC + R +L + ++ +GH P T
Sbjct: 99 GIPPDVYTLNILINSFCHLNRLGFAFSVLAK------------------ILKLGHQPDTA 140
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +I+ LC GKI AL L M G P+ Y TLI L
Sbjct: 141 TFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGL 184
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + G PNV TYTI+ EA ++ M + +G PD
Sbjct: 464 CRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDG 523
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + G + + ++LL E + RG + +V T
Sbjct: 524 CTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVST 560
>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 521
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D EAR++ M + G P+V TY+++ EA ++ G PD
Sbjct: 370 HCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPD 429
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYTY +++ G C G+ + ++L E +RG PNVV + +
Sbjct: 430 VYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVV------------------AYTAL 471
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ + A L M + G IP +LY L+ L
Sbjct: 472 ISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 510
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKP 49
CY + D +++++ M + G V TYTIL E L N +K + +
Sbjct: 175 CYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVG 234
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVY YTAV++ +C+ G ++L+E + GV PN T+
Sbjct: 235 DVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPN------------------ERTYGV 276
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I+ C +G+++ A +LL M G ++ +++T+I
Sbjct: 277 LIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMI 313
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLM-NVKNDGLKPD 50
YC + A KV+D NG PN TY +L EA EML+ +++ G+ +
Sbjct: 246 YCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLN 305
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLH-NVIDIGHIPRTITFN 108
+ ++DG+C+ G ++ ++ + A+E+ GV N+ T L + +G +P +T+
Sbjct: 306 QIIFNTMIDGYCRKGMVDDALK-IKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYT 364
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I C G + +A L M E G PS Y +I
Sbjct: 365 TLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMI 402
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC K +A K+ M G N+ TY L M G+ P+ TYT ++
Sbjct: 316 YCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRM-----GVVPNYVTYTTLISIH 370
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------NVIDIGHIPRT 104
CK G E L E E+G TP+V+T +IH + + G +P
Sbjct: 371 CKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDV 430
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ +++ C GK+D AL L M + G P+ Y LI L ++
Sbjct: 431 YTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKE 478
Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C +AR+++D M +G N Y ++L+ Y E+L ++N+G++ V
Sbjct: 142 CKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATV 201
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++D ++V L NE NVV ++L+ VI
Sbjct: 202 GTYTILVDSLSTARDISKVEALFNEMKAN----NVVGDVYLYTA--------------VI 243
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
A C G + +A +L +G P+ Y LIK
Sbjct: 244 NAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIK 279
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K E K+ D G P++ Y L A+E++ ++ + PD T
Sbjct: 262 KGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVT 321
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN-VI 96
Y +M G C +GR +E +L++E +RG+ P++VT + + N ++
Sbjct: 322 YNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 381
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P +T+N +IQ LC G+ D A ++ M E+G P + Y +LI+ L +
Sbjct: 382 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 437
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ A D M + G V TY +L EAYE++ + GL PD
Sbjct: 154 YCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 213
Query: 51 VYTYTAVMDGFCKVGRSNEVME-----------------------------------LLN 75
V+TY +++G CK G + +E L +
Sbjct: 214 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFD 273
Query: 76 EAIERGVTPNVV---TLIHLHNV---ID-----IGHI------PRTITFNNVIQALCGVG 118
EA+ RG+ P++V LI+ H+ ID +G + P +T+N +++ LC +G
Sbjct: 274 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 333
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D+A L+ M + G P Y+TLI
Sbjct: 334 RVDEARKLIDEMTKRGIQPDLVTYNTLIS 362
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P+ YTY V+ G+CKVGR +E +++ +E + +G P +
Sbjct: 103 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK-----------------PEAV 145
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I C GK+D ALL M E G + Y+ L+ L
Sbjct: 146 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 189
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ TY V+ GFC GR ++++ E ERG G P T+
Sbjct: 69 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERG-----------------GIAPNQYTY 111
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
VI C VG++D+A+ + M G++ P +Y+ LI
Sbjct: 112 GTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 151
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 36/184 (19%)
Query: 2 YCNKNDFFEARKVIDYMFD-NGYHPNVTTY-TILEAY--------------EMLMNVKND 45
+C++ A ++ M + G PN TY T++ + EML +
Sbjct: 82 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE-- 139
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------- 91
+KP+ Y A++ G+C G+ + + + +ERGV V T L+H
Sbjct: 140 -VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEA 198
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ + G P T+N +I C G + KAL + M G + Y +LI
Sbjct: 199 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 258
Query: 149 LDQQ 152
L ++
Sbjct: 259 LSKK 262
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR V D + G P V ++ L E + + ++++ + PD
Sbjct: 152 FCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V+T++A+++G CK GR +E L +E +G+ PN VT L +
Sbjct: 212 VFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQ 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P +T+N +I LC VG + +A L+ M G P R + TLI
Sbjct: 272 MMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLI 324
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D EAR++++ M +G P+ T+T L A E+ + +G++ D
Sbjct: 293 CKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDD 352
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
+T ++ G C+ GR ++ +L + + G P+ T L
Sbjct: 353 VAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKE 412
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ GH+P +T+N ++ LC G++ A +LL M G P+ Y+ L++
Sbjct: 413 MQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLE 465
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 28/170 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K M G P++ TY L EA ++ + GL+PD T+T ++D
Sbjct: 266 ALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLID 325
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IH-----LHNVIDIGHIP 102
G CK G +E+ +E G+ + V +H L +++ G P
Sbjct: 326 GCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKP 385
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+ V+ C G + LL M G +P Y+ L+ L +Q
Sbjct: 386 DDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 435
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 29/143 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----EAYEMLMNVKN------DGLKPDV 51
C + E + D M G PN T+T+L + ++ + +KN G++PD+
Sbjct: 223 CKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDL 282
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY A+++G CKVG E L+NE G+ P+ ITF +I
Sbjct: 283 VTYNALINGLCKVGDLKEARRLVNEMSASGLRPD------------------RITFTTLI 324
Query: 112 QALCGVGKIDKALLLLFLMYEHG 134
C G ++ AL + M E G
Sbjct: 325 DGCCKYGDMESALEIKRRMVEEG 347
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---- 89
++ + V + G P+ + + +M GFCKVG + +E +RG+ P VV+
Sbjct: 125 RSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLI 184
Query: 90 ------------IHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L V++ + P TF+ +I LC G++D+ LL M G +
Sbjct: 185 SGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLV 244
Query: 137 PSRTLYDTLI 146
P+ + LI
Sbjct: 245 PNGVTFTVLI 254
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +++ M G+ P+ TYT++ +++L +++DG P V
Sbjct: 363 CRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGV 422
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
TY A+M+G CK G+ LL+ + GV PN +T +N++ GH
Sbjct: 423 VTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDIT----YNILLEGH 467
>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 793
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
+C EA+K++ M+ +G PN +YT LEA EM+ + P+
Sbjct: 456 FCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPN 515
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
TY AVM G + G+ +E +L E +E+G P V + +L
Sbjct: 516 AITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLE 575
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G + F VI C +G ++ AL +L MY GK P Y L L ++
Sbjct: 576 ECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKK 634
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D G+H + Y+ + EA +++++ + G PDV TYTA++DGFC++GR +
Sbjct: 404 DKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRID 463
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHN-------------VIDIGH----IPRTITFNNVI 111
E ++L + + G PN V+ L N +I++ P IT+ V+
Sbjct: 464 EAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVM 523
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
L GK+ +A L M E G P+ + LI+ L Q
Sbjct: 524 HGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQ 563
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYM-FDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E + +++ M +++ P+ TY L +A L ++ G D
Sbjct: 351 CKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHID 410
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+A++ FC+ GR +E L+ + RG P+VV T+ +
Sbjct: 411 KVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVV------------------TYTAI 452
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C +G+ID+A +L MY+HG P+ Y L+ L
Sbjct: 453 VDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGL 491
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 31/137 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A V+D M+ +G HP+ TYT L EA E+++ + + GL P
Sbjct: 596 FCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPT 655
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +V+ + + GR ++++ LL + ++R P +N V
Sbjct: 656 PVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQ--------------------PFRTVYNQV 695
Query: 111 IQALCGVGKIDKALLLL 127
I+ LC G +++A LL
Sbjct: 696 IEKLCDFGNLEEAEKLL 712
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 31/158 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY------EMLMNVKND----GLKPDV 51
C EA+K ++ + G NV +T ++ + E ++V +D G PD
Sbjct: 562 CQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDA 621
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYTA+ D K GR +E EL+ + + +G+ P +T+ +VI
Sbjct: 622 VTYTALFDALGKKGRLDEAAELIVKMLSKGLDPT------------------PVTYRSVI 663
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G++D L LL M + + P RT+Y+ +I+KL
Sbjct: 664 HRYSQWGRVDDMLNLLEKMLK--RQPFRTVYNQVIEKL 699
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 30/163 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHP-----NVTTYTILE------AYEMLMNVKNDGLKPD 50
Y A +V+ M G P N T Y +++ A + L ++ G+KPD
Sbjct: 245 YSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPD 304
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY +++ G+C + R + +EL+ +G P+ +++ V
Sbjct: 305 IVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPD------------------KVSYYTV 346
Query: 111 IQALCGVGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKKLDQQ 152
+ LC KI++ L+ M + IP + Y+TLI L +
Sbjct: 347 MGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKH 389
>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 37/183 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C D +A ++++ M + G P+ T+ IL + E+L ++ DG+ P+
Sbjct: 245 CKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPN 304
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
V TYT+V+ G+CK GR + M + N+ + G +PNVVT +NV+ G+
Sbjct: 305 VVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVT----YNVLINGYGKAGNMGSAV 360
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P +TF+++I C G++D A+ + M ++ P+ + +I
Sbjct: 361 AVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTF 420
Query: 150 DQQ 152
+Q
Sbjct: 421 CKQ 423
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A V + M G PNV TY +L A + + PD
Sbjct: 315 YCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPD 374
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-----------LHNV- 95
V T+++++DG+C+ G+ ++ M++ E + + PN T +IH LH +
Sbjct: 375 VVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLK 434
Query: 96 -----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
DI P+ +N VI LC GK+D+A ++L M E G P + Y LI
Sbjct: 435 KMNMRTDIA--PQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILI 488
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 26/120 (21%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH-------- 100
PDV+++ V+ G CKVG + +EL+ E G +P+ VT HN++ G
Sbjct: 232 PDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVT----HNILVNGLCRAKEVSK 287
Query: 101 --------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P +T+ +VI C G+++ A+ + M G P+ Y+ LI
Sbjct: 288 GREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLI 347
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFD-NGYHPNVTTYTILEA-----------YEMLMNVKNDGLKPD 50
C +A ++ D M D +GY PN + L +L G +
Sbjct: 138 CQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIE 197
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y Y +MD F GR + + L I+ GV + P +FN V
Sbjct: 198 AYAYNKLMDLFIGHGRVQDAVALFEGWIQGGV-----------------YSPDVWSFNVV 240
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ +C VG + KAL L+ M E G P ++ L+ L
Sbjct: 241 IKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGL 279
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA +L+ ++ G +PD YTYT ++ G C GR E + ++ +E G +P+ + +
Sbjct: 464 EANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVV 519
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 31/161 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLK 48
+C + EA ++ + +H PNV T+ L A+E++ +K L+
Sbjct: 220 FCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLR 279
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
D +TYT +MDG CK GR++EV + E + G P+VV T+
Sbjct: 280 ADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVV------------------TYT 321
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ A C G + A ++ M G P T Y L++ L
Sbjct: 322 TLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGL 362
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLK 48
CYC + +AR++++ + +V T + EAY++L++ V+ K
Sbjct: 115 CYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAK 172
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHL 92
PD+ + ++ GFCK GR E E+L + G PN VT + L
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232
Query: 93 HNVI---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+ D P +TFN +I LC +++ A L+ M Y TL+ L
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGL 292
Query: 150 DQQ 152
+Q
Sbjct: 293 CKQ 295
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
P+ +T++ ++ G CK GR E +E N+ +ER PN+ + + L ++ G +
Sbjct: 1 PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH-GKIPSRTLYDTLIK------ 147
P IT N +I C + +DKAL L M ++ +P T Y +IK
Sbjct: 61 FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120
Query: 148 KLDQ 151
+LDQ
Sbjct: 121 RLDQ 124
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 29/133 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E +V + M G +P+V TYT L +A +++ ++ G+ PDV
Sbjct: 293 CKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDV 352
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT +++G + G+ E E I R P P + ++ ++
Sbjct: 353 TTYTVLLEGLFENGKVRTATEFF-EKILRERCP-----------------PCAVVYSALV 394
Query: 112 QALCGVGKIDKAL 124
+ C +D+A+
Sbjct: 395 RGCCKAALVDEAV 407
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 35/157 (22%)
Query: 8 FFEARK------VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
FF+AR V M G HPN+ TY IL +A + ++ ++PD
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 502
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY +++G CK G+ + EL +GV+PNV I +N +
Sbjct: 503 IYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNV------------------IAYNTM 544
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I C G ++A LL M E G +P+ Y+TLI+
Sbjct: 545 ISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIR 581
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA M + + P+
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY+ ++ GFCK R E MEL E +RG+ N V TLIH
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 457
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +T+N ++ LC GK+ KA+++ + P Y+ +I+ +
Sbjct: 458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + + N G++PDV+TY++++ C GR ++ LL++ IER + PNVVT L
Sbjct: 276 DALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 335
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+I P T++++I C ++D+A + LM
Sbjct: 336 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 395
Query: 137 PSRTLYDTLIK 147
P+ Y TLIK
Sbjct: 396 PNVVTYSTLIK 406
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 31/161 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A V+ M GY P++ T + L +A ++ + G KP
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D +T+T ++ G +++E + L+++ ++RG P++V T+
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV------------------TYGT 228
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIKKL 149
V+ LC G ID AL LL M E GKI + +Y+T+I L
Sbjct: 229 VVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIIDGL 268
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN + +A +++ M + +PNV T++ L EA ++ + + P
Sbjct: 302 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 361
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++TY+++++GFC R +E + I + PNVV T++
Sbjct: 362 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV------------------TYST 403
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I+ C ++++ + L M + G + + Y TLI
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTY 54
N EA ++D M G P++ TY T++ A +L ++ ++ DV Y
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 261
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
++DG CK ++ + L E +G+ P+V T++++I L
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNKGIRPDV------------------FTYSSLISCL 303
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G+ A LL M E P+ + LI
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALI 335
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ D+YTY+ ++ FC+ + + + +L + ++ G P++VTL L N
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G+ P T TF +I L K +A+ L+ M + G P Y T++
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232
Query: 149 L 149
L
Sbjct: 233 L 233
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEM----------LMNVKNDGLKPD 50
+C EAR ++ M ++G+ P+V TYT ++EAY M L +++ G P+
Sbjct: 274 WCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPN 333
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHL----------HNVID 97
V TYT VM K GR+ E +++ ++ G P+ +LI++ ++V+D
Sbjct: 334 VITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVD 393
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P TFN +I A C + + AL +L M E P Y L+K
Sbjct: 394 KMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLK 447
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+D M G P V T+ L A +ML+ ++ KPD+ TYT ++
Sbjct: 387 DANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLL 446
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
CK + L+ + +TP+ T+ ++ LC G
Sbjct: 447 KLCCKRQWIKVLRFLICHMFRKDITPDFS------------------TYTLLVTWLCRNG 488
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
K ++ L L M G P + +D + +KLD+
Sbjct: 489 KPAQSCLFLEEMVLKGFAPKKETFDLVAEKLDK 521
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
PD ++ ++ G+CK NE +++ E E G P+V+T LI
Sbjct: 262 PDESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAI 321
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L+ + G P IT+ V+ AL G+ +AL + + G P + Y++LI
Sbjct: 322 LNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLI 376
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + + E + ++ + GL+P+V TYT ++D FCK +L + G T
Sbjct: 230 HALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCT 289
Query: 84 PNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
PNV+T L H ++D G P TI++N +I+ LC +G + AL
Sbjct: 290 PNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDF 349
Query: 127 LFLMYEHGKIPSRTLYDTLI 146
M + +P+ T Y TL+
Sbjct: 350 FNSMKRNALLPNATTYSTLV 369
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 34/176 (19%)
Query: 8 FFEARKVID------YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
FFE KV D +M D G+ P+ +Y +L A + ++K + L P+
Sbjct: 302 FFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPN 361
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
TY+ ++DGF G + M + NE G PNVV ++ +V+ +
Sbjct: 362 ATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLID 421
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+TFN +I LC G++ +AL + M +G P+ Y+ L+ L
Sbjct: 422 KMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGL 477
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND-----GLKPDVYTYTA 56
C + ARK++D M G HP+ ++ TI+ L V+ P +Y A
Sbjct: 168 CQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNA 227
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIG 99
V+ C R EV ++NE ++RG+ PNVVT L ++ +G
Sbjct: 228 VVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMG 287
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF +++ GK+ AL + M + G PS Y+ LI+ L
Sbjct: 288 CTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGL 337
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A V M NG HPN TY L +A+ M++ + N+G + +
Sbjct: 443 CDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSL 502
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------LHNV 95
TY V++ C++ M LL + +G+ P+ T +IH L
Sbjct: 503 VTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQ 562
Query: 96 IDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ + PR + + +I LC GK+ A++ L M G P+ ++ L++ +
Sbjct: 563 MNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 617
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
N++ G+ P+VYTY ++ C+ R + ++L+E +G P+ V+ H I G
Sbjct: 147 NMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVS----HGTIVSGM 202
Query: 101 ----------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
+P ++N V+ ALCG ++ + ++ M + G P+ Y T
Sbjct: 203 CKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTT 262
Query: 145 LI 146
++
Sbjct: 263 IV 264
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 32/182 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + +A V++ GY P+V T+ T+++ Y +++ + G+ PD
Sbjct: 335 CKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDA 394
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDI------------ 98
TY +V++G CK G++ EV E E I +G PN +T I + N I
Sbjct: 395 ITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVR 454
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI----KKLD 150
G +P TI+FN +I C G +D A LL + E G + ++ LI KL+
Sbjct: 455 MSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLN 514
Query: 151 QQ 152
Q
Sbjct: 515 MQ 516
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ EA +++ G+ P+ TY L A E+ + LKPD
Sbjct: 229 YCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPD 288
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI----- 98
+ Y +++ G C+ G ++++NE +E G P++ T L + N+ D
Sbjct: 289 LVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMN 348
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G++P TFN +I C K+D AL L+ M+ +G P Y++++ L
Sbjct: 349 DAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGL 404
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +++ M D P+V TY L EA + L + N G PD
Sbjct: 161 CEGGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDD 219
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY ++DG+CK E ELL +AI +G P+ +T+ ++I
Sbjct: 220 FTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPD------------------RVTYCSLI 261
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G +++AL L P +Y++L+K L +Q
Sbjct: 262 NGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQ 302
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E + + M G PN TY IL EA +++ + DGL PD
Sbjct: 405 CKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDT 464
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHN-------------- 94
++ ++ GFC+ G + L + E+G + T LI ++
Sbjct: 465 ISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGE 524
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G+ P T+ ++ C +D+A + L M G +PS + ++ L
Sbjct: 525 MISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSL 579
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 31/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVK----------NDGLKPD 50
+C D A + + + GY T+ IL AY +N++ + G KPD
Sbjct: 474 FCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 533
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY ++DG CK + +HL ++ G +P TF V
Sbjct: 534 LYTYRVLVDGSCKAANVDR------------------AYVHLAEMVSKGFVPSMATFGRV 575
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +L ++ +A+ ++ +M G +P + DT++
Sbjct: 576 LNSLAMNHRVSEAVAIIHIMVRMGVVPE--VVDTILS 610
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 29/169 (17%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAV 57
++AR + D M P+V T+ I+E+ +L V G+ + +T
Sbjct: 97 YDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIW 156
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGH 100
+ G C+ GR E + L+ E+++ + P+VVT +L +++ G
Sbjct: 157 IRGLCEGGRLEEAVALV-ESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGC 215
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IP T+N +I C + +A LL G +P R Y +LI L
Sbjct: 216 IPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGL 264
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
++D + + YH +A+++ + + + G+ PD T+T + FC GR + + L
Sbjct: 16 IMDALVNTAYHD--------QAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRL 67
Query: 74 LNEAIERG--VTP----NVVTLIHLH-NVIDIGHI----------PRTITFNNVIQALCG 116
L ERG V P VV ++ H + D H+ P TFNNV+ ALC
Sbjct: 68 LRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQ 127
Query: 117 VGKIDKALLLLFLMYEHG 134
G I ++ LL + + G
Sbjct: 128 KGDIMESGALLAKVLKRG 145
>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
Length = 693
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA++++ M G P+V TY+ + +A +M+ ++ + KP+
Sbjct: 315 FCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPN 374
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-- 98
T+TA+++G CKVG+++E ELLN++ E TP+ +T ++H L D+
Sbjct: 375 TVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVV 434
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKA 123
G P T+ N +I ALC GK +A
Sbjct: 435 QMLQKGFFPTTVEINLLIHALCKDGKPAEA 464
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 35/176 (19%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E R ++ M D G P+ TY +L EA E L + + D
Sbjct: 245 CKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVD 304
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID----IGHI----- 101
Y+A++ FC GR E E++ E I +G P+VVT V+D IG +
Sbjct: 305 EVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVT---YSTVVDGFCRIGELDQARK 361
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+T ++ LC VGK +A LL E PS Y ++
Sbjct: 362 MMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVM 417
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 31/163 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y A +V+ M +G P+++ + +A E ++ G++PD
Sbjct: 139 YSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPD 198
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
VYTY ++ G C R + ME++ ++ G P+ ++ + + +
Sbjct: 199 VYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQ 258
Query: 97 ----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
D G P +T+N +I L G D+A L FL GK
Sbjct: 259 RMRNDAGLFPDQVTYNVLIHGLAKHGHADEA--LEFLRESEGK 299
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 63/210 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +ARK++ +M+ N PN T+T L EA+E+L + + P
Sbjct: 350 FCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPS 409
Query: 51 VYTYTAVMDGF-----------------------------------CKVGRSNEVMELLN 75
TY+ VM GF CK G+ E + +
Sbjct: 410 DITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFME 469
Query: 76 EAIERGVTPNVV---TLIH-------LHNVIDI-------GHIPRTITFNNVIQALCGVG 118
+ +G T NVV T+IH L + + + P +T+ V+ AL G
Sbjct: 470 QCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKG 529
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +A L+ M G +P+ Y T+I +
Sbjct: 530 RLKEATGLVEKMLNRGLLPTPVTYRTVIHR 559
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A +L ++ DG PD+ ++ GR ++ +E GV P+V T
Sbjct: 148 AMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYT------ 201
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I+ LCG ++ A+ ++ +M ++G P + Y T++ L
Sbjct: 202 ------------YNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFL 244
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + ++ V D + G P+V ++ L + + + + G++PD
Sbjct: 146 FCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + +E EL E +++G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLI 318
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 28/165 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A ++ + GLKPD
Sbjct: 251 HCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G E IE + + V LI L
Sbjct: 311 KITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
++ +G P + T+ +I C G + LL M G +PS
Sbjct: 371 EMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 415
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +AR +I+ M G P+ TYT L
Sbjct: 287 CKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G +LL E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 407 MQRDGHVPSVVT 418
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 29/158 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTY--TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
F RKV++++ Y V + ILE G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYKEILEC----------GYPASLYFFNILMHRFCKEG 150
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFN 108
+ + + G+ P+VV+ L N I G + P T++
Sbjct: 151 EIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYS 210
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC K+D+A L M + G +P+ + TLI
Sbjct: 211 VLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLI 248
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + AR VI++M +NG PNV Y+ L +A +L +K+ GLKPD
Sbjct: 355 FCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPD 414
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT++++ F + G+ +E +ELL E E + T+TFN +
Sbjct: 415 AITYTSLINFFSRNGQIDEAIELLTEMKENDCQAD------------------TVTFNVI 456
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ LC G+ D+AL ++ + + G ++ Y ++ L Q
Sbjct: 457 LGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQ 497
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 30/154 (19%)
Query: 23 YHPNVTTYTIL-----------EAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEV 70
Y PNV + IL A+E++ ++N P+V TY+ +MDG C+ GR E
Sbjct: 269 YKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEA 328
Query: 71 MELLNEAIER-GVTPNVVT---LIH----------LHNVIDI----GHIPRTITFNNVIQ 112
EL E + + + P+ +T LI+ NVI+ G P ++ ++
Sbjct: 329 FELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVD 388
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC GK+ A +L M G P Y +LI
Sbjct: 389 GLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLI 422
>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Glycine max]
Length = 577
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 27/175 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDV 51
+C + + +++ M +P+V+TY + E +++ ++K+ G PD
Sbjct: 259 FCKEGQYDRVSEILHIMIAKQCNPDVSTYQEIIYGLLKMKNSEGFQVFNDLKDRGYFPDR 318
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
YT V+ G C++ R E +L E I++G PN T ++H +
Sbjct: 319 VMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHGYCKIGDLAEARKIFED 378
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G+ T+++ +I LC G+ D+A L M++ G +P Y+ LIK L
Sbjct: 379 MRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKAL 433
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 16/133 (12%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT- 88
Y +L+ YE+L + +GL PD + ++ GFCK G+ + V E+L+ I + P+V T
Sbjct: 228 YKVLKGYELLKELLENGLCPDNVVFNELIRGFCKEGQYDRVSEILHIMIAKQCNPDVSTY 287
Query: 89 ------LIHLHN---------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L+ + N + D G+ P + + VI+ LC + ++ +A L F M +
Sbjct: 288 QEIIYGLLKMKNSEGFQVFNDLKDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKK 347
Query: 134 GKIPSRTLYDTLI 146
G P+ Y+ ++
Sbjct: 348 GFQPNEYTYNVMM 360
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 42/148 (28%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC D EARK+ + M D GY +Y + + G
Sbjct: 363 YCKIGDLAEARKIFEDMRDRGYAETTVSYGTM------------------------ISGL 398
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
C GR++E L E ++G+ P++ IT+N +I+ALC KI
Sbjct: 399 CLHGRTDEAQSLFEEMFQKGIVPDL------------------ITYNCLIKALCKEVKIV 440
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
KA LL L+ G S + LIK+L
Sbjct: 441 KARKLLNLLLAQGLELSVFSFSPLIKQL 468
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 31/161 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLK 48
+C + EA ++ + +H PNV T+ L A+E++ +K L+
Sbjct: 220 FCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLR 279
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
D +TYT +MDG CK GR++EV + E + G P+VV T+
Sbjct: 280 ADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVV------------------TYT 321
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ A C G + A ++ M G P T Y L++ L
Sbjct: 322 TLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGL 362
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLK 48
CYC + +AR++++ + +V T + EAY++L++ V+ K
Sbjct: 115 CYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAK 172
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHL 92
PD+ + ++ GFCK GR E E+L + G PN VT + L
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232
Query: 93 HNVI---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+ D P +TFN +I LC +++ A L+ M Y TL+ L
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGL 292
Query: 150 DQQ 152
+Q
Sbjct: 293 CKQ 295
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
P+ +T++ ++ G CK GR E +E N+ +ER PN+ + + L ++ G +
Sbjct: 1 PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEH-GKIPSRTLYDTLIK------ 147
P IT N +I C + +DKAL L M ++ +P T Y +IK
Sbjct: 61 FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120
Query: 148 KLDQ 151
+LDQ
Sbjct: 121 RLDQ 124
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 29/133 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E +V + M G +P+V TYT L +A +++ ++ G+ PDV
Sbjct: 293 CKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDV 352
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT +++G + G+ E E I R P P + ++ ++
Sbjct: 353 TTYTVLLEGLFENGKVRTATEFF-EKILRERCP-----------------PCAVVYSALV 394
Query: 112 QALCGVGKIDKAL 124
+ C +D+A+
Sbjct: 395 RGCCKAALVDEAV 407
>gi|357495705|ref|XP_003618141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493156|gb|AES74359.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 846
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 31/177 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D + ++ M + G+ P++ TY IL +A+ + + G+ P++
Sbjct: 274 CREGDSDKVNGFLEKMEEEGFEPDLVTYNILINGYCKKRRLEDAFYLYKIMGIRGVVPNL 333
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---------------LH 93
+Y+A+M+G CK G+ E +L N+ ++RG+ P+VV TLI LH
Sbjct: 334 ISYSALMNGLCKEGKIKEAHQLFNQMVQRGIDPDVVSYNTLISGYCKEGGKMQMCRSLLH 393
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-KIPSRTLYDTLIKKL 149
+I IG P +T V Q GK+ AL ++ + G KIP LYD L+ L
Sbjct: 394 EMIGIGIRPDNVTCRIVFQGYTREGKLLSALNMVAELQRFGIKIP-ENLYDYLLVAL 449
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-- 89
I E +E+ + G+ + YT+ + C+ G S++V L + E G P++VT
Sbjct: 244 IGECWEVYEEMGRLGIHRNGYTFNIMTHVLCREGDSDKVNGFLEKMEEEGFEPDLVTYNI 303
Query: 90 --------------IHLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+L+ ++ I G +P I+++ ++ LC GKI +A L M + G
Sbjct: 304 LINGYCKKRRLEDAFYLYKIMGIRGVVPNLISYSALMNGLCKEGKIKEAHQLFNQMVQRG 363
Query: 135 KIPSRTLYDTLI 146
P Y+TLI
Sbjct: 364 IDPDVVSYNTLI 375
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 30/157 (19%)
Query: 3 CNKNDFFEARK-VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + F AR +I D Y P ++TY L EA + + +K +
Sbjct: 450 CKEGRPFAARSFLIRISQDGDYVPEMSTYIKLAESLCSFNNVEEALILKSEMAKKSMKLN 509
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY A++ C+V R++E LL E + G+ P++ I R +
Sbjct: 510 LTTYKAIISCLCRVKRTSEAENLLEEMVSLGILPDL-------------EIKRAL----- 551
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I C +DKA+ LL + ++ Y+ ++K
Sbjct: 552 INGYCEENDVDKAVSLLKFFAKEFQVYDTESYNAIVK 588
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA +++ M G P++ L +A +L +
Sbjct: 519 CLCRVKRTSEAENLLEEMVSLGILPDLEIKRALINGYCEENDVDKAVSLLKFFAKEFQVY 578
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
D +Y A++ FC+VG E+MEL ++ ++ G PN +T
Sbjct: 579 DTESYNAIVKVFCEVGNVAELMELQDKLVKIGYVPNSLT 617
>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 693
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCN +A + + +G P++TT TIL +A + N+K +GLK D
Sbjct: 418 YCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLD 477
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY +M G+ K + N+V EL++E G++P+V T LIH +
Sbjct: 478 VVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIIS 537
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+I G +P T+ F +VI G +A +L F M
Sbjct: 538 ELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYM 574
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
N FE +ID M G P+V TY IL EA E++ + G P +
Sbjct: 495 NKVFE---LIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAF 551
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
T V+ GF K G E L + + P+VVT L+H + ++D
Sbjct: 552 TDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLD 611
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
G P + +N +I C VG I+KA L+ LM + G +P+ + + L+ L+
Sbjct: 612 AGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLE 664
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 66/199 (33%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA--- 56
AR+ +++M G H N ++ + +E+LM +K+ G++PD+ +T
Sbjct: 255 AREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFID 314
Query: 57 --------------------------------VMDGFCKVGRSNEVMELLNEAIERGVTP 84
V+DGFCKVG+ E ++L++ R P
Sbjct: 315 KLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLR---P 371
Query: 85 NVVTLIH-----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
N+ + ++G +P + + +I C +G+ DKA
Sbjct: 372 NIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYF 431
Query: 128 FLMYEHGKIPSRTLYDTLI 146
+ + G PS T LI
Sbjct: 432 GALLKSGNPPSLTTSTILI 450
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + DF EA + YM D P+V T + L +A + + + GLKPD
Sbjct: 558 FSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPD 617
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V Y ++ G+C VG + EL+ ++RG+ PN T
Sbjct: 618 VVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNEST 655
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 27/144 (18%)
Query: 28 TTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
+T +L A + + GL PD YT ++DG+C +GR+++ + ++ G P++
Sbjct: 385 STGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLT 444
Query: 88 TLIHLHNVIDIGHIPR----------------------TITFNNVIQALCGVGKIDKALL 125
T + I IG R +T+NN++ +++K
Sbjct: 445 T-----STILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFE 499
Query: 126 LLFLMYEHGKIPSRTLYDTLIKKL 149
L+ M G P Y+ LI +
Sbjct: 500 LIDEMRSAGISPDVATYNILIHSM 523
>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 693
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCN +A + + +G P++TT TIL +A + N+K +GLK D
Sbjct: 418 YCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLD 477
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY +M G+ K + N+V EL++E G++P+V T LIH +
Sbjct: 478 VVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIIS 537
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+I G +P T+ F +VI G +A +L F M
Sbjct: 538 ELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYM 574
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
N FE +ID M G P+V TY IL EA E++ + G P +
Sbjct: 495 NKVFE---LIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAF 551
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
T V+ GF K G E L + + P+VVT L+H + ++D
Sbjct: 552 TDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLD 611
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
G P + +N +I C VG I+KA L+ LM + G +P+ + + L+ L+
Sbjct: 612 AGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLE 664
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 66/199 (33%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA--- 56
AR+ +++M G H N ++ + +E+LM +K+ G++PD+ +T
Sbjct: 255 AREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFID 314
Query: 57 --------------------------------VMDGFCKVGRSNEVMELLNEAIERGVTP 84
V+DGFCKVG+ E ++L++ R P
Sbjct: 315 KLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLR---P 371
Query: 85 NVVTLIH-----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
N+ + ++G +P + + +I C +G+ DKA
Sbjct: 372 NIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYF 431
Query: 128 FLMYEHGKIPSRTLYDTLI 146
+ + G PS T LI
Sbjct: 432 GALLKSGNPPSLTTSTILI 450
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + DF EA + YM D P+V T + L +A + + + GLKPD
Sbjct: 558 FSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPD 617
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V Y ++ G+C VG + EL+ ++RG+ PN T
Sbjct: 618 VVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNEST 655
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 27/144 (18%)
Query: 28 TTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
+T +L A + + GL PD YT ++DG+C +GR+++ + ++ G P++
Sbjct: 385 STGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLT 444
Query: 88 TLIHLHNVIDIGHIPR----------------------TITFNNVIQALCGVGKIDKALL 125
T + I IG R +T+NN++ +++K
Sbjct: 445 T-----STILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFE 499
Query: 126 LLFLMYEHGKIPSRTLYDTLIKKL 149
L+ M G P Y+ LI +
Sbjct: 500 LIDEMRSAGISPDVATYNILIHSM 523
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + D M + G P+ TYT+L +A+ + + G KP+V
Sbjct: 277 CEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNV 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VIDIGHI--- 101
+TYT ++DG C+ G+ E + + ++ G+ P+V+T L N V+ +
Sbjct: 337 HTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTV 396
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P TFN +++ LC VGK KA+ LL M ++G P Y+ LI L
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGL 451
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C EA V M +G P+V TY ++ A+E+L ++ KP+V
Sbjct: 347 CRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNV 406
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
T+ +M+G C+VG+ + + LL ++ G++P++V+ + + + GH+
Sbjct: 407 RTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTS 466
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
P +TF +I A C GK D A L LM G
Sbjct: 467 MNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 29/137 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V TYT L ++ ML +K G P+VY YT +++G C+ GR E
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+LL+ + GV+PN VT + V+ G++ NN GK+D+AL + M
Sbjct: 636 EKLLSAMQDSGVSPNHVT----YTVMVKGYV------NN--------GKLDRALETVRAM 677
Query: 131 YEHGKIPSRTLYDTLIK 147
E G + +Y +L++
Sbjct: 678 VERGYELNDRIYSSLLR 694
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 63/212 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++A ++ M DNG P++ +Y +L AY++L ++ + L+PD
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDC 476
Query: 52 YTYTAVM-----------------------------------DGFCKVGRSNEVMELLNE 76
T+TA++ DG C VG++ + + +L
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILET 536
Query: 77 AIERGV--TPNVVTLI---------------HLHNVIDIGHIPRTITFNNVIQALCGVGK 119
++ + TP+ + +I L + +G +P +T+ ++ L G
Sbjct: 537 LVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I + +L LM G +P+ Y +I L Q
Sbjct: 597 ISGSFRMLELMKLSGCLPNVYPYTIIINGLCQ 628
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E ML + GL P V TYT ++DG + G + +L G PNV
Sbjct: 564 EELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVY------ 617
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P TI +I LC G++++A LL M + G P+ Y ++K
Sbjct: 618 --------PYTI----IINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 27/139 (19%)
Query: 12 RKVIDYMFDNGYHPNVTTYTILEAYEMLM-NVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
R +++ + NGY EA EM M + G D + T+++ GFC+ +
Sbjct: 199 RTIVNALCKNGY---------TEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDA 249
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+++ + G P +++++ +I LC VG++++A L M
Sbjct: 250 LKVFDLMSREGTCA-----------------PNSVSYSILIHGLCEVGRLEEAFGLKDQM 292
Query: 131 YEHGKIPSRTLYDTLIKKL 149
E G PS Y LIK L
Sbjct: 293 GEKGCQPSTRTYTVLIKAL 311
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 36/177 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC + + EA +V+ M D G HPN+ + ++++ + + L ++ G+KPD
Sbjct: 278 YCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPD 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V T++ +M+G+ GR ++ E+ ++ ++ G+ P+ IH+ +++ G +
Sbjct: 338 VITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPD----IHVFSILAKGFVRAGEPVKAE 393
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + F +I C GK++KA + M + P+ ++TLI
Sbjct: 394 SLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLI 450
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA V+ M +G P+V TY L +A +++++ N + P+
Sbjct: 209 CKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNE 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
T ++ G+C+ G E + ++ + G+ PN+V L +DIG
Sbjct: 269 RTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTM 328
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P ITF+ ++ G++DK + M + G P ++ L K
Sbjct: 329 MEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAK 381
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 29/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEA-----------YEMLMNVKNDGLKPDVYTYTAVM 58
EA+ + + + + G+ P TYT L A +L ++ G+KPD A++
Sbjct: 75 EAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAII 134
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNVI---------------DIGH 100
+ F + G E ME+ + E G P TLI + +I
Sbjct: 135 NAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNL 194
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P T+N ++ ALC I +A ++ M G P Y+TL + Q
Sbjct: 195 KPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQ 245
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
E+ K+++ M PN TY IL EA+ ++ + G++PDV TY +
Sbjct: 180 ESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTL 239
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGH 100
+ + G +N+ ++ + + + V PN T L ++ + D+G
Sbjct: 240 ARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGI 299
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + FN++I+ +G D L +M E G P + T++
Sbjct: 300 HPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIM 345
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 28/166 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++ M + G PN+TTY I+ EA+ + +K DV TYT+V+
Sbjct: 214 KALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVI 273
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
G VG + N+ ++ GV P+V T ++ ++ G++
Sbjct: 274 HGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYV 333
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +IT+N VI+ LC VG++ +A+ L+ M + P+ Y+ LI+
Sbjct: 334 PNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIR 379
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLH 93
AY + +K K D +Y +++G+C + R+ + +E+L E +ERG+TPN+ T I L+
Sbjct: 181 AYNLFKALKGK-FKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLN 239
Query: 94 NVIDIGHIPRT----------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
G +T+ +VI L VG+I +A + M + G +P
Sbjct: 240 GYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLP 299
Query: 138 SRTLYDTLIKKL 149
S ++ LI+ L
Sbjct: 300 SVATFNALIQIL 311
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 31/168 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K+ A + + M GY PN TY ++ A E++ +++D +P+V
Sbjct: 312 CKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNV 371
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------------- 91
TY ++ FC G + ++L + PN+ T LI+
Sbjct: 372 QTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKL 431
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
L ++D G +PR +TFN V+ L G D A +L L G++P +
Sbjct: 432 LVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSLQGGCGRLPRK 479
>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 1 CYCNKNDFFEARKVIDYM---FDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG 46
C C F ID M FD P++ TYTIL EA ++ +K G
Sbjct: 202 CLCKSRIFNSVYSFIDEMKSSFD--IKPDLVTYTILIDNVCNAKNIREADRLVAVLKECG 259
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH------------ 91
LKPD + Y +M G+C + + E + + + E GV P++V TLI
Sbjct: 260 LKPDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKCGRVSEAK 319
Query: 92 --LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L +++ GH P +T+ +++ +C G + A LL M G P+ Y+TL+
Sbjct: 320 KLLKIMVESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNSCTYNTLL 376
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 29/147 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+K++ M ++G+ P+ TYT +L A +L ++ G P+ TY ++
Sbjct: 317 EAKKLLKIMVESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNSCTYNTLL 376
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
GFCK R N+ +EL I++G G T ++ ++ALC G
Sbjct: 377 HGFCKGRRLNKGVELYG-VIKKG-----------------GMKLETASYATFVRALCREG 418
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ +A + E + Y TL
Sbjct: 419 RVAEAYEVFDYAVESKSLTDVAAYTTL 445
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 29/170 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+KV++ M + G+ PN T + +A ++ + KPD +TY ++
Sbjct: 142 AQKVLNLMINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHSKPDTFTYNFLVK 201
Query: 60 GFCKVGRSNEVMELLNEAIER-GVTPNVVTL-IHLHNVIDIGHI---------------- 101
CK N V ++E + P++VT I + NV + +I
Sbjct: 202 CLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLVAVLKECGLK 261
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +N +++ C + K +A+ + M E G P Y+TLI L +
Sbjct: 262 PDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSK 311
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 31/154 (20%)
Query: 25 PNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
P+ +TY +L A ++L + N G KP+ +T + C GR ++ +
Sbjct: 119 PDRSTYHVLLSQSCREPDSSLSSAQKVLNLMINKGFKPNQFTVDVAIRSLCSAGRVDDAI 178
Query: 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHI------------------PRTITFNNVIQA 113
L+ E + P+ T L + I P +T+ +I
Sbjct: 179 LLVKEFSSKHSKPDTFTYNFLVKCLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDN 238
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+C I +A L+ ++ E G P LY+T++K
Sbjct: 239 VCNAKNIREADRLVAVLKECGLKPDAFLYNTIMK 272
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M G PN TY L + E+ +K G+K +
Sbjct: 345 CREGDVLGAAALLEEMELKGCSPNSCTYNTLLHGFCKGRRLNKGVELYGVIKKGGMKLET 404
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
+Y + C+ GR E E+ + A+E +V L + +
Sbjct: 405 ASYATFVRALCREGRVAEAYEVFDYAVESKSLTDVAAYTTLESTL 449
>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 627
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M +G P+ TY + EA L +++DG++PDV
Sbjct: 127 CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDV 186
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P++ T L+ +H ++D+
Sbjct: 187 VTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDL 246
Query: 99 ---------------------------------------GHIPRTITFNNVIQALCGVGK 119
G P +T+ VI LC G+
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 306
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ A+L M + G P +Y++LI L
Sbjct: 307 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSL 336
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYE----------MLMNVKNDGLKPDV 51
C EARK+ D M G P++TTY T+L+ Y +L + +G+ P+
Sbjct: 197 CKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 256
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
Y ++ ++ + K + E M + ++ ++G+ PN VT +++
Sbjct: 257 YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ 316
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ID G P +I +N++I +LC K +KA L M + G S ++++I
Sbjct: 317 MIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 368
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVV---TLIH-------LHNVI 96
PDV++Y +++G C RS E +ELL+ + G P+VV T+I+ L ++
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKML 108
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
D P +T+N++I ALC +DKA+ +L M + G +P Y++++
Sbjct: 109 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 158
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTY-TILEAYEM---LMNVKNDGLKPDVYTYTA 56
C++N EA +++ M D+G P+V +Y T++ + L + + + P+V TY +
Sbjct: 62 CDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNS 121
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIG 99
++ CK ++ ME+L ++ GV P+ +T ++ L + G
Sbjct: 122 IIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG 181
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +T+N+++ LC G+ +A + M + G P T Y TL++
Sbjct: 182 VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M D G P+ Y L +A E+ + + + G+
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 361
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
+ +++D CK GR E +L + + GV P+++TL
Sbjct: 362 IFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITL 399
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V++ M NG P+ TY + EA +L + +DG++PD
Sbjct: 252 CKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDA 311
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TYT++MD CK GR E ++L+ I+RG+ PNV+T L+ + +++D+
Sbjct: 312 VTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDL 371
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P F+ +I A +D A+ + M + P Y TLI L
Sbjct: 372 MVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGL 426
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 28/152 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA +++ M +G P+ TYT L EA ++L ++ GLKP+
Sbjct: 286 YCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPN 345
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVIDIGHI--- 101
V TY+ ++ G+ G E+ +LL+ + G+ P+ ++ H +D+
Sbjct: 346 VITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFS 405
Query: 102 --------PRTITFNNVIQALCGVGKIDKALL 125
P +T+ +I LC G++D A+L
Sbjct: 406 KMRQQRLTPDVVTYGTLIDGLCKSGRVDDAML 437
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+++ EA +++ M D+G P+V +Y+ + +AY + G+ P
Sbjct: 180 CHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILP 239
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DV TY ++ CK ++ M++LN ++ GV P+ +T ++H L
Sbjct: 240 DVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGIL 299
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+ +++ LC G+ +A +L M + G P+ Y TL+
Sbjct: 300 EKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLL 353
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIHL----------- 92
G P V++Y ++ G C RS E +ELL+ + G P+VV+ +
Sbjct: 164 GCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSD 223
Query: 93 ------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H +++ G +P +T+N ++ ALC +DKA+ +L M ++G +P Y++++
Sbjct: 224 KAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIV 283
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 20/137 (14%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-------VTPN 85
+ + + + + P ++TY ++ C+ GR + L I++G TP
Sbjct: 80 VSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPL 139
Query: 86 VVTL-----------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ +L I L + ++G P ++N +++ LC + +AL LL +M + G
Sbjct: 140 LKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDG 199
Query: 135 K--IPSRTLYDTLIKKL 149
P Y T+I L
Sbjct: 200 GDCPPDVVSYSTIIDGL 216
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D EAR++ M + G P+V TY ++ EA ++ G PD
Sbjct: 432 HCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPD 491
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYTY +++ G C G+ + ++L E +RG PNVV + +
Sbjct: 492 VYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVV------------------AYTAL 533
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ + A L M + G IP +LY L+ L
Sbjct: 534 ISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 572
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKP 49
CY + D +++++ M + G V TYTIL E L N +K + +
Sbjct: 221 CYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVG 280
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVY YTAV++ +C+ G ++L+E + GV PN T+
Sbjct: 281 DVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPN------------------ERTYGV 322
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I C +G+++ A +LL M G ++ +++T+I
Sbjct: 323 LINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMI 359
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 78/208 (37%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN---------- 41
YC + A KV+D NG PN TY +L EA EML+
Sbjct: 292 YCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLN 351
Query: 42 --------------------------VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
++ G++ D+YTY + G C+V R +E LL+
Sbjct: 352 QIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLH 411
Query: 76 EAIERGVTPNVV---TLIHLH--------------NVIDIGHIPRTITFNNVIQALCGVG 118
IE GV PN V TLI +H + + G P +T+N +I G
Sbjct: 412 IMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKG 471
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +A M + G +P Y +L+
Sbjct: 472 SIREAERFRKEMEKKGFVPDVYTYASLV 499
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 1 CYCNK--NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL 47
C+ NK N +A + M +G P++ +Y IL EA+ + +
Sbjct: 148 CWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---C 204
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------------- 94
PD+ TY +MDG+CK+G++ E L+ E ++ G PNV T + N
Sbjct: 205 SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWE 264
Query: 95 ----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ +P +TFN +I C G ++ A+ L M + G + Y+TLI L
Sbjct: 265 VFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSL 323
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 30/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ EA + D M + PNV TY+IL EA + L ++K G P
Sbjct: 359 FCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPT 417
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY +++GFCK G + + G PN T+ FN +
Sbjct: 418 VVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPN------------------TVIFNTL 459
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC + + L LL M+ G P Y+ LI L
Sbjct: 460 IDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGL 498
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKP 49
+C +A K+ M G + TY L A ++ ++ GL P
Sbjct: 288 FCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTP 347
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
+ TY +++ GFC R +E M+ +E +E PNV+T LI L
Sbjct: 348 TIVTYNSLIQGFCDARRLSEAMQYFDE-MEGKCAPNVITYSILIDGLCKVRRMKEAAKTL 406
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G+ P +T+ +I C G++ ALL M G P+ +++TLI L
Sbjct: 407 EDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGL 463
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P+ +TY ++ GFCK G+ ++ + + ++ G+ PN T+ N
Sbjct: 30 PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTM------------------N 71
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ LC +G++ AL L M +P+ ++ L++
Sbjct: 72 TLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLR 110
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 38/127 (29%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
FFE K+ G PN + L + +L ++ +G KPDV TY
Sbjct: 440 FFEKMKLA------GCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNC 493
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
++ G C R + L + PNV TFN +I+ LC
Sbjct: 494 LISGLCSANRVEDAQRLFDGM---ACAPNVT------------------TFNFLIRGLCA 532
Query: 117 VGKIDKA 123
K+++A
Sbjct: 533 QKKVEEA 539
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C +A ++++ M + G P+ T+ I+ +E+L ++ DG+ P+
Sbjct: 265 CRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----VIDIGHI----- 101
V T+T+V+ G+CK G+ + M + N+ + G+ PN VT L N V D+G
Sbjct: 325 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 384
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+++I C G++D AL + M +H P+ + +I L +Q
Sbjct: 385 QMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQ 443
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 39/179 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
YC +A V + M +G PN TY +L E Y+ + ++
Sbjct: 335 YCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLR---C 391
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVI---------- 96
PDV T+++++DG+C+ G+ ++ + + ++ + + PNV T I +H++
Sbjct: 392 PPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIC 451
Query: 97 ---------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
DI P+ +N VI LC GK+D+A L+ M E G P + Y LI
Sbjct: 452 LLNELNLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILI 508
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 26/120 (21%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------DI 98
PDV+++ V+ G C+VG+ + +EL+ E G +P+ VT HN+I
Sbjct: 252 PDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT----HNIIVDGLCRTNEVSR 307
Query: 99 GH------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GH +P +TF +VI C GK++ A+ + M G +P+ Y+ LI
Sbjct: 308 GHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLI 367
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA + ++ G +PD YTYT ++ G+C R +E + +E +E G +P+ +T+
Sbjct: 484 EANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITV 539
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNV----------TTYTILEAYEMLMNVKND-GLKPD 50
C +A ++ D M + GY P+ T +L+A L++ ++ G + +
Sbjct: 158 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVE 217
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y Y +M GR ++V+ L I+ V + P +FN V
Sbjct: 218 AYAYNKLMSSLIGRGRVHDVVALFERWIQDRV-----------------YSPDVWSFNVV 260
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ +C VG++ KAL L+ M E G P ++ ++ L
Sbjct: 261 IKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGL 299
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C +A ++++ M + G P+ T+ I+ +E+L ++ DG+ P+
Sbjct: 260 CRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 319
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----VIDIGHI----- 101
V T+T+V+ G+CK G+ + M + N+ + G+ PN VT L N V D+G
Sbjct: 320 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 379
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+++I C G++D AL + M +H P+ + +I L +Q
Sbjct: 380 QMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQ 438
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 35/177 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGL 47
YC +A V + M +G PN TY +L E Y+ + ++
Sbjct: 330 YCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLR---C 386
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IH 91
PDV T+++++DG+C+ G+ ++ + + ++ + + PNV T I
Sbjct: 387 PPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIR 446
Query: 92 LHNVIDIGH--IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L N +++ P+ +N VI LC GK+D+A L+ M E G P + Y LI
Sbjct: 447 LLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILI 503
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 26/120 (21%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------DI 98
PDV+++ V+ G C+VG+ + +EL+ E G +P+ VT HN+I
Sbjct: 247 PDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT----HNIIVDGLCRTNEVSR 302
Query: 99 GH------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GH +P +TF +VI C GK++ A+ + M G +P+ Y+ LI
Sbjct: 303 GHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLI 362
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA + ++ G +PD YTYT ++ G+C R +E + +E +E G +P+ +T+
Sbjct: 479 EANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITV 534
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNV----------TTYTILEAYEMLMNVKND-GLKPD 50
C +A ++ D M + GY P+ T +L+A L++ ++ G + +
Sbjct: 153 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVE 212
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y Y +M GR ++V+ L I+ D + P +FN V
Sbjct: 213 AYAYNKLMSSLIGRGRVHDVVALFERWIQ-----------------DRLYSPDVWSFNVV 255
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ +C VG++ KAL L+ M E G P ++ ++ L
Sbjct: 256 IKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGL 294
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 36/179 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ M G PNV T++IL +A +L + G+KP+V
Sbjct: 158 CKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNV 217
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI---------- 101
TY A+MDG+C V + N+ + + N ++ GV PNV +N+I G
Sbjct: 218 VTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNV----WCYNIIINGLCKKKRVDEAMN 273
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I LC +GKI +L L+ M GK Y++L+ L
Sbjct: 274 LFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHAL 332
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N +A + + M G PNV Y I+ EA + + + PD
Sbjct: 227 YCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPD 286
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++DG CK+G+ + +EL++E G T ++ IT+N++
Sbjct: 287 VVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDI------------------ITYNSL 328
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ALC +D+A+ L+ + + G P+ Y TLI L
Sbjct: 329 LHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGL 367
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +++D M G ++ TY L +A ++ +K+ G++P+V
Sbjct: 298 CKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNV 357
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DG CK GR + + E + G HI T+N +I
Sbjct: 358 CTYTTLIDGLCKDGRLEDAYVIFQEILTEGY-----------------HI-TVWTYNVMI 399
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G D+AL LL M ++ IP Y+T+I L ++
Sbjct: 400 NGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEK 440
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 25/171 (14%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLM---NVKNDGLKP 49
CYC+ ++ + GY PN T+T L +AYE L+ +V G K
Sbjct: 54 CYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKL 113
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH--------------LHNV 95
D +Y +M+G CK+G + M++L + T+I +
Sbjct: 114 DQVSYAILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEM 173
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G P TF+ ++ ALC K +A+ LL +M + G P+ Y ++
Sbjct: 174 IAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIM 224
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A + ++ +G+KP + T T +M+ +C G + +L + ++ G PN
Sbjct: 29 AISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPN--------- 79
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ITF +I+ +C G+ +ALL + HG
Sbjct: 80 ---------SITFTTLIKGMCLNGQAYEALLFHDHVVAHG 110
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + GYH V TY ++ EA +L ++++ PD
Sbjct: 368 CKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDA 427
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI 98
+Y ++ + G + + +LL I RG++ + +++ + D+
Sbjct: 428 VSYETIIYALSEKGETVKTNKLLCAMIVRGLSKRLKKKVNMTTIADL 474
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EAR V + M + G PN+ TY L +A ++ + G P V
Sbjct: 202 CKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSV 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI------ 98
++Y+ +++G+CK R +E LL + E+ + PN VT L H ++++
Sbjct: 262 HSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKK 321
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P T++ ++ LC G +++AL LL M E P LY+ LI+ +
Sbjct: 322 MCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGM 376
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
YC EA+ ++ M + PN TY ++LEA E+ + + G+ P+
Sbjct: 271 YCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPN 330
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY+ ++DG CK G E ++LL ER + P++V +N +
Sbjct: 331 LRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIV------------------LYNIL 372
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IQ + GK++ A L ++ +G PS Y+ +IK L
Sbjct: 373 IQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGL 411
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A V+ MF G P+ T+T L EA E+ + P+
Sbjct: 132 CRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNT 191
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
T+T ++D CK G +E + E+GV PN+ T L N
Sbjct: 192 VTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEI 251
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +++ +I C +ID+A LL M E IP+ Y+TL++ L
Sbjct: 252 MVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGL 306
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+++ +F NG P+V TY I+ EAY++ +++DG PD +Y ++
Sbjct: 385 AKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQ 444
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
GF + + ++L++E + R + + T
Sbjct: 445 GFLQNQDPSTAIQLIDEMVGRRFSADSSTF 474
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K++ M + P++ Y IL A E+ + +G++P V
Sbjct: 342 CKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSV 401
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
TY ++ G K G S+E +L + + G P+
Sbjct: 402 RTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPD 435
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 33/161 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A +V + M D G H N+ Y + E ++L +++ G++PD
Sbjct: 334 YCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPD 393
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+Y ++DG+C+ G + E+ + G+ T+T+N +
Sbjct: 394 KYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAAT------------------TLTYNTL 435
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSR----TLYDTLIK 147
++ C + ID AL L FLM + G P+ TL D L K
Sbjct: 436 LKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFK 476
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 35/160 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + + + + + P+ TY+ L EA+ + + + GL P++
Sbjct: 711 CKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNI 770
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ G CK G+ + + L N+ +G++PN IT+N +I
Sbjct: 771 ITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPN------------------GITYNTLI 812
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C GK +A L M E G + + IK LDQ
Sbjct: 813 DEYCKEGKTTEAFKLKQKMVEEGYM------EEAIKLLDQ 846
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
EA E+L +K PD TY + DG+CK+G+ L+N+ G P+V
Sbjct: 517 EAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFI 576
Query: 93 ---------HNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H V DI G P +T+ +I C G + +A L F M +G
Sbjct: 577 TGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMN 636
Query: 137 PS 138
P+
Sbjct: 637 PN 638
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAY------EMLMNVKND----GLKPD 50
+C+ + +A ++ M G PN ++ T+L+ E +N+ + GL +
Sbjct: 439 FCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKN 498
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ V++G CK+GR E ELL+ E P+ ++T+ +
Sbjct: 499 VITFNTVINGLCKIGRMAEAEELLDRMKELRCPPD------------------SLTYRTL 540
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C +G++ A L+ M G PS ++++ I
Sbjct: 541 FDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFI 576
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 23/150 (15%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PN+ TY L EA + + N+G+ P+V+ +A+M F K G+
Sbjct: 595 MSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGK 654
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT----------FNNVIQALCG 116
+E +L + + + P I + I H+ TI +N +I LC
Sbjct: 655 VDEANLVLQKLVNIDMIPGCS--ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCK 712
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+I A L + +P Y +LI
Sbjct: 713 SGRIADAKSLFESLRNKRFLPDNFTYSSLI 742
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNV-------TTYTILEAYEMLMNVKND----GLKPD 50
YC A +++ M G+ P+V T + I + + + ++ ++ GL P+
Sbjct: 544 YCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPN 603
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
+ TY A++ G+CK G +E L E + G+ PNV
Sbjct: 604 LVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNV 639
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ +A E + ++ GL+ ++ Y AVMD +C +G + + +L +G++PNVV
Sbjct: 234 VAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVV---- 289
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
T+ +++ C G++++A ++ M E G I
Sbjct: 290 --------------TYTLLVKGYCKDGRMEEAERVVKEMKETGDI 320
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + EA K+ M + GY + EA ++L + + + P+ TY ++ G+
Sbjct: 815 YCKEGKTTEAFKLKQKMVEEGY--------MEEAIKLLDQMIENNVDPNYITYCTLIHGY 866
Query: 62 CKVGRSNEVMELLNEAIERGVTP 84
K G E+ +L +E RG+ P
Sbjct: 867 IKSGNMEEISKLYDEMHIRGLLP 889
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K+ F +A +++ M + GY PN+ TY I+ EA ++ N+K+ G+ P+
Sbjct: 203 YAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPN 262
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
+ TY+A++ + + G E +L +E IE G P ++ L
Sbjct: 263 IVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQ 322
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G +P T + ++ A G+ +A LL F M + G +P Y L++
Sbjct: 323 DMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVR 376
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y N + RK+ M D G PN TY L EA E+ + G D
Sbjct: 98 YANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKD 157
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVI- 96
V+TY + + K G ++ LL+E +GV P+ VT + H ++
Sbjct: 158 VHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILR 217
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G+ P T+N ++ + + +A L + G +P+ Y ++
Sbjct: 218 EMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAML 270
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 70/174 (40%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMN-VKNDGLKPD 50
Y K F EA ++ D M G +V TY I LE E L++ + G+ PD
Sbjct: 133 YGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPD 192
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHL----------------H 93
TY ++D + K + E+L E E G PN+ T I L
Sbjct: 193 QVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFE 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
N+ G +P +T++ ++ G +A L M E G IP Y LI+
Sbjct: 253 NLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIE 306
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 29/138 (21%)
Query: 18 MFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
M +G V TYT++ A +L +K G KPD Y +++G G
Sbjct: 8 MMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSG 67
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFN 108
R ++L++ + V+ N+VT +L + D G P + T+N
Sbjct: 68 RLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYN 127
Query: 109 NVIQALCGVGKIDKALLL 126
+IQ G +AL L
Sbjct: 128 ALIQGYGRKGLFKEALEL 145
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 28/177 (15%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N A K++D M + N+ TYT L + ++ +K+ G P+ +
Sbjct: 65 NSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSW 124
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID-- 97
TY A++ G+ + G E +EL +E G +V T L + ++D
Sbjct: 125 TYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEM 184
Query: 98 --IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P +T+N ++ KA +L M E G P+ Y+ ++ ++
Sbjct: 185 DTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKE 241
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 33/161 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A +V + M D G H N+ Y + E ++L +++ G++PD
Sbjct: 334 YCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPD 393
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+Y ++DG+C+ G + E+ + G+ T+T+N +
Sbjct: 394 KYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAAT------------------TLTYNTL 435
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSR----TLYDTLIK 147
++ C + ID AL L FLM + G P+ TL D L K
Sbjct: 436 LKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFK 476
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + + + + + P+ TY+ L EA+ + + + GL P++
Sbjct: 711 CKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNI 770
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY +++ G CK G+ + + L N+ +G++PN +T L
Sbjct: 771 ITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQK 830
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P IT++ +I LC G +++A+ LL M E+ P+ Y TLI
Sbjct: 831 MVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLI 882
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A + + + G PN TY L EA+++ + +G++P V
Sbjct: 781 CKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTV 840
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI 101
TY+ ++ G C G E ++LL++ IE V PN +T L H I G++
Sbjct: 841 ITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNM 891
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
EA E+L +K PD TY + DG+CK+G+ L+N+ G P+V
Sbjct: 517 EAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFI 576
Query: 93 ---------HNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H V DI G P +T+ +I C G + +A L F M +G
Sbjct: 577 TGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMN 636
Query: 137 PS 138
P+
Sbjct: 637 PN 638
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA K+ M + G P V TY+IL EA ++L + + + P+
Sbjct: 815 YCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPN 874
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP 84
TY ++ G+ K G E+ +L +E RG+ P
Sbjct: 875 YITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 908
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAY------EMLMNVKND----GLKPD 50
+C+ + +A ++ M G PN ++ T+L+ E +N+ + GL +
Sbjct: 439 FCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKN 498
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ V++G CK+GR E ELL+ E P+ ++T+ +
Sbjct: 499 VITFNTVINGLCKIGRMAEAEELLDRMKELRCPPD------------------SLTYRTL 540
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C +G++ A L+ M G PS ++++ I
Sbjct: 541 FDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFI 576
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 23/150 (15%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G PN+ TY L EA + + N+G+ P+V+ +A+M F K G+
Sbjct: 595 MSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGK 654
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT----------FNNVIQALCG 116
+E +L + + + P I + I H+ TI +N +I LC
Sbjct: 655 VDEANLVLQKLVNIDMIPGCS--ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCK 712
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+I A L + +P Y +LI
Sbjct: 713 SGRIADAKSLFESLRNKRFLPDNFTYSSLI 742
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNV-------TTYTILEAYEMLMNVKND----GLKPD 50
YC A +++ M G+ P+V T + I + + + ++ ++ GL P+
Sbjct: 544 YCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPN 603
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
+ TY A++ G+CK G +E L E + G+ PNV
Sbjct: 604 LVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNV 639
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ +A E + ++ GL+ ++ Y AVMD +C +G + + +L +G++PNVV
Sbjct: 234 VAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVV---- 289
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
T+ +++ C G++++A ++ M E G I
Sbjct: 290 --------------TYTLLVKGYCKDGRMEEAERVVKEMKETGDI 320
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P ++ L E + + ++ G++PD
Sbjct: 146 FCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + + EL NE ++ G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLI 318
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A+ +ID M G P+ TYT L A+E + + ++ D
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P +IG T+ +I
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------------EIG------TYTMII 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C G + L+ M G +PS
Sbjct: 389 NEFCKKGDVWTGSKLMKEMQRDGYVPS 415
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 31/166 (18%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
F+ R+VI M + G + TY IL +A E++M + ++GL+PD TYT +
Sbjct: 497 FQLREVI--MLE-GISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCL 553
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------NVIDIGH 100
+ C+ G E + N+ I G+ P+ VT +IH + +++ G
Sbjct: 554 IHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGV 613
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+N +I ALC +G+ A + M E G +P++ Y LI
Sbjct: 614 EPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLI 659
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 79/211 (37%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
YC D EAR++ + M + G P+V TYTIL E + + GL+PD
Sbjct: 417 YCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPD 476
Query: 51 VY-----------------------------------TYTAVMDGFCKVGRSNEVMELLN 75
+ TY ++DG CK G + EL+
Sbjct: 477 CFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMM 536
Query: 76 EAIERGVTPNVVT---LIHLH--------------NVIDIGHIPRTITFNNVIQALCGVG 118
+ I G+ P+ +T LIH H ++I G P +T+ +I A C G
Sbjct: 537 QMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRG 596
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A M E G P+ Y+ LI L
Sbjct: 597 NLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 627
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EARK + M +G P+ TYT++ AY + +G++P+
Sbjct: 557 HCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPN 616
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY ++ C++GR+ E +ERG+ PN T
Sbjct: 617 EITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYT 654
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V TY L EA + +++ GL P V TY ++DG+C++G E
Sbjct: 367 GLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEA 426
Query: 71 MELLNEAIERGVTPNVVTLIHL----HNVIDI-------------GHIPRTITFNNVIQA 113
L E +E+G P+V T L HNV + G P +N I A
Sbjct: 427 RRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICA 486
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G I K+ L ++ G Y+ LI L
Sbjct: 487 EITLGDISKSFQLREVIMLEGISSDTVTYNILIDGL 522
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------- 88
++ + ++N+G+ P V TY A++ G + G+ E G+ P+V+T
Sbjct: 323 DLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGY 382
Query: 89 ---------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
L+ ++ G P +T+N +I C +G +++A L M E G +P
Sbjct: 383 CKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDV 442
Query: 140 TLYDTLIK 147
Y L+K
Sbjct: 443 YTYTILMK 450
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT--PNVVTLIHLHNVIDIGHIPR 103
G++P + TY ++D F K GR +++ LL E RG + PN VT +NV+ G +
Sbjct: 226 GIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVT----YNVVIAGLARK 281
Query: 104 --------------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
+ T+N +I L G + K L M G +P+ Y+
Sbjct: 282 GYLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYN 341
Query: 144 TLIKKLDQ 151
+I L Q
Sbjct: 342 AMIHGLLQ 349
Score = 39.3 bits (90), Expect = 0.61, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + + A M + G PN TY +L AY + GL P+
Sbjct: 592 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPN 651
Query: 51 VYTYTAVMDG 60
YTYT ++DG
Sbjct: 652 KYTYTLLIDG 661
>gi|356498877|ref|XP_003518274.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 395
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A K++ M G PNV TY +L EA L N+ + ++ DV
Sbjct: 42 CKESGVGQAMKLLIEMMSKGCKPNVVTYNVLIKGICNEGRLDEAIRFLKNLPSYSIQLDV 101
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YT ++ C G+ + M+LL + G +PNVV TFN +I
Sbjct: 102 ISYTIILHSLCSGGKWMDAMKLLASMLRNGFSPNVV------------------TFNTLI 143
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G + KAL +L +M +HG P+ Y+ LI+
Sbjct: 144 NFLCLKGLLGKALNVLEMMPKHGCTPNFRSYNPLIE 179
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITF 107
PDV T T ++D CK + M+LL E + +G PNVVT + + + + G + I F
Sbjct: 29 PDVVTCTELIDAACKESGVGQAMKLLIEMMSKGCKPNVVTYNVLIKGICNEGRLDEAIRF 88
Query: 108 ----------------NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +LC GK A+ LL M +G P+ ++TLI
Sbjct: 89 LKNLPSYSIQLDVISYTIILHSLCSGGKWMDAMKLLASMLRNGFSPNVVTFNTLI 143
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 89/234 (38%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A K++ M NG+ PNV T+ L +A +L + G P+
Sbjct: 112 CSGGKWMDAMKLLASMLRNGFSPNVVTFNTLINFLCLKGLLGKALNVLEMMPKHGCTPNF 171
Query: 52 YTYTAVMDGFC-----------------------------------KVGRSNEVMELLNE 76
+Y +++GFC K G+ ++ +E+LN+
Sbjct: 172 RSYNPLIEGFCNEKSADRTIEYSRIMVSRGCYLDTVTYNILLTALCKDGKVDDAIEILNQ 231
Query: 77 AIERGVTPNVVTLIHLHNVIDIG---HI-----------PRTITFNNV------------ 110
G +P ++T I + ++ +G H+ P ITF +V
Sbjct: 232 LSLNGCSPLLITYIVIDGLLKVGKTVHVVVLFEEIKALKPNLITFTSVEGGLSRKGKVHE 291
Query: 111 -----------------IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I LC + +A+ L M E+G P+ Y+ L+K
Sbjct: 292 AIQNFRFLEGLGIRXSIIMGLCKTQQTSRAIDFLAYMVENGCKPTEATYNILVK 345
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M + PNV TYT+L +A ++L + GL P V TY A++
Sbjct: 327 EALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALI 386
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IH-----LHNVIDIGHI 101
DG+CK G S +E+L+ +PN T IH LH +++
Sbjct: 387 DGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQ 446
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I C G + A LL LM E G +P Y I L
Sbjct: 447 PNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTL 494
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ M + PNV TY IL AY++L + GL PD
Sbjct: 424 FCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPD 483
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TY+ +D CK G E L E+G+ N V TLI L
Sbjct: 484 EWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLD 543
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P +IT+N++I C +A LL+ +M + P+ Y LI L
Sbjct: 544 KMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNL 599
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +F EAR ++D M P TYTIL +A++M + + G PD
Sbjct: 564 YCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPD 623
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ YTA + +C GR + L+ + +G+ P+ T+ +
Sbjct: 624 VFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPD------------------TMLYTLF 665
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
I A G ID A +L M+E G PS Y LIK L
Sbjct: 666 IDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLS 705
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A + M + G N +YT L EA ++ + D P
Sbjct: 249 YCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPT 308
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TYT ++ C++GR E + + E E+ PNV T LI L+
Sbjct: 309 VRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILN 368
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G IP +T+N +I C G AL +L LM + P+ Y+ LI
Sbjct: 369 GMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELI 421
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
E + + + +D + P+++T +++G+CK+G E +++ ++ G++ + T L
Sbjct: 187 EMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLI 246
Query: 93 -----------HNVI-----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N I + G + +++ N+I C ++D+AL L M+E
Sbjct: 247 LGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCW 306
Query: 137 PSRTLYDTLIKKLDQ 151
P+ Y +I L Q
Sbjct: 307 PTVRTYTVIIFALCQ 321
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C +F +A ++++ M + G P+ T+ IL + +E+L ++ DG+ P+
Sbjct: 226 CRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPN 285
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHN 94
TYT+V+ G+CK G+ + M + N+ +E G PN VT + ++
Sbjct: 286 AVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYR 345
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + H P +TF+++I C G++D A + M H P+ + +I L +Q
Sbjct: 346 QLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQ 404
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A V + M ++G PN TY +L A M + PD
Sbjct: 296 YCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPD 355
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------------- 91
V T+++++DG+C+ G+ ++ + E + PNV T +IH
Sbjct: 356 VVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILR 415
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L+ DI P+T +N VI LC GK+D+A L++ M E G P + Y LI
Sbjct: 416 ELNMRTDIA--PQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILI 469
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 31/135 (22%)
Query: 45 DGL-KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-------- 95
DGL PDV+++ V+ G C++G + +EL+ E G +P+ +T HN+
Sbjct: 208 DGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTIT----HNILVDGLCRA 263
Query: 96 --IDIGH------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
++ GH +P +T+ +VI C GK++ A+ + M E G P+
Sbjct: 264 KQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVT 323
Query: 142 YDTLI----KKLDQQ 152
Y+ LI K LD +
Sbjct: 324 YNVLINGYGKALDME 338
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA ++ ++K G PD YTYT ++ G C GR E + L ++ +E G P+ +T+
Sbjct: 445 EANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITV 500
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M + G HP+ TYTIL EA + + G +PD
Sbjct: 438 CKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDN 497
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T + + K G NEV +++ A G+ V+
Sbjct: 498 ITVNSFVSCVLKAGMPNEVDQIMLIASGHGLASQKVS 534
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 32/178 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
C+ D +A +++ M ++G PNV Y+ +L+ Y ++ + G++PDV
Sbjct: 159 CDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDV 218
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YT ++D C+ G+ + +++++ +ERG+ PNVVT L +N
Sbjct: 219 VMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNN 278
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI---PSRTLYDTLIKKL 149
+++ G +T+N +I L GV ++D+A+ LL M HG+ P+ ++++I L
Sbjct: 279 MLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMI-HGETMVEPNVVTFNSVIHGL 335
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 38/182 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC + KV + M G P+V YT + +A +++ + GL+P+
Sbjct: 193 YCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPN 252
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---------------------- 88
V TY +++ CK G E M L N +E+GV + VT
Sbjct: 253 VVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLE 312
Query: 89 -LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+IH +++ P +TFN+VI LC G++ +A + +M E+G + ++ LI
Sbjct: 313 EMIHGETMVE----PNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIG 368
Query: 148 KL 149
L
Sbjct: 369 GL 370
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P +YT L +A +L +++ G++PDV TY ++ G C ++ +EL
Sbjct: 111 PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVEL 170
Query: 74 LNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCG 116
L E E G+ PNVV L + G P + + +I +LC
Sbjct: 171 LREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCR 230
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GK+ KA ++ M E G P+ Y+ LI +
Sbjct: 231 EGKVKKATQVMDKMMERGLEPNVVTYNVLINSM 263
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 62/207 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V D M +NG N+ T+ +L +A E++ + + GL+PD
Sbjct: 336 CKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDS 395
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV------------------------ 87
+TY+ +++GFCK+ + + LL++ G+ P +V
Sbjct: 396 FTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDE 455
Query: 88 -------------TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKI 120
T+IH L +++D G IP ++T++ +I G +
Sbjct: 456 MHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDL 515
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIK 147
A +L M G +P ++D+LIK
Sbjct: 516 GAAERVLKQMTASGFVPDVAVFDSLIK 542
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 65/215 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL---- 47
C + +A +V+D M + G PNV TY +L EA + N+ G+
Sbjct: 229 CREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDA 288
Query: 48 ---------------------------------KPDVYTYTAVMDGFCKVGRSNEVMELL 74
+P+V T+ +V+ G CK GR + ++
Sbjct: 289 VTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVR 348
Query: 75 NEAIERGVTPNVVT-------LIHLHNV----------IDIGHIPRTITFNNVIQALCGV 117
+ E G N+VT L+ +H V G P + T++ +I C +
Sbjct: 349 DMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKM 408
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++D+A LL M G P Y L+ L +Q
Sbjct: 409 WQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQ 443
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A + + +M D G P+ TY++L A +L + G PDV
Sbjct: 475 CRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDV 534
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+ +++ G+ G + +V+EL+ E + +
Sbjct: 535 AVFDSLIKGYGAKGDTEKVLELIREMTAKDI 565
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HPN ++IL EA + ++ GL P+
Sbjct: 238 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY AV+ CK GR + M + I+ G++P N+V +LIH +
Sbjct: 298 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 357
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P Y TLI
Sbjct: 358 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 410
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M +G P+ TY + EA L +++DG++PDV
Sbjct: 134 CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDV 193
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 194 VTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 253
Query: 99 ---------------------------------------GHIPRTITFNNVIQALCGVGK 119
G P +T+ VI LC G+
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ A+L M + G P +Y++LI L
Sbjct: 314 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 343
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 32/150 (21%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTA 56
+AR V D + G P+V +Y IL EA E+L + +DG PDV +Y+
Sbjct: 35 DARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
V++GF K G ++ NE +++ ++PNVV T+N++I ALC
Sbjct: 94 VINGFFKEGDLDKTYSTYNEMLDQRISPNVV------------------TYNSIIAALCK 135
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+DKA+ +L M + G +P Y++++
Sbjct: 136 AQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 165
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ D M G P++ TY+ L EA ++L ++ + G+KPD
Sbjct: 378 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 437
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY+ +++G+CK+ R + + L E GV+P+++T
Sbjct: 438 CVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIIT 475
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C CNK + A ++I M D G N + ++E+ ++ + G+KP
Sbjct: 344 CTCNK--WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 401
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+ TY+ ++DG+C G+ +E +LL + G+ P+ V T++
Sbjct: 402 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV------------------TYST 443
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I C + ++ AL+L M G P Y+ +++ L Q
Sbjct: 444 LINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQ 485
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 41/189 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA K++ M G P+ TY+ L +A + +++ G+ PD
Sbjct: 413 YCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPD 472
Query: 51 VYTYTAVMDGFCKVGRSNEVMEL-------------------LNEAIERGVTPNVVTLIH 91
+ TY ++ G + R+ EL L+ + +T + + +
Sbjct: 473 IITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQ 532
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY--------- 142
++D+ R TFN +I AL VG+ D+A L +G +P+ Y
Sbjct: 533 NLCLMDLKLEAR--TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 590
Query: 143 DTLIKKLDQ 151
L+++LDQ
Sbjct: 591 QGLLEELDQ 599
>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
Length = 384
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K+ F +A +++ M + GY PN+ TY I+ EA ++ N+K+ G+ P+
Sbjct: 203 YAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPN 262
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
+ TY+A++ + + G E +L +E IE G P ++ L
Sbjct: 263 IVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQ 322
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G +P T + ++ A G+ +A LL F M + G +P Y L++
Sbjct: 323 DMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVR 376
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y N + RK+ M D G PN TY L EA E+ + G D
Sbjct: 98 YANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKD 157
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVI- 96
V+TY + + K G ++ LL+E +GV P+ VT + H ++
Sbjct: 158 VHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILR 217
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G+ P T+N ++ + + +A L + G +P+ Y ++
Sbjct: 218 EMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAML 270
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 70/174 (40%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMN-VKNDGLKPD 50
Y K F EA ++ D M G +V TY I LE E L++ + G+ PD
Sbjct: 133 YGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPD 192
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHL----------------H 93
TY ++D + K + E+L E E G PN+ T I L
Sbjct: 193 QVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFE 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
N+ G +P +T++ ++ G +A L M E G IP Y LI+
Sbjct: 253 NLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIE 306
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 29/138 (21%)
Query: 18 MFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
M +G V TYT++ A +L +K G KPD Y +++G G
Sbjct: 8 MMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSG 67
Query: 66 RSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFN 108
R ++L++ V+ N+VT +L + D G P + T+N
Sbjct: 68 RLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYN 127
Query: 109 NVIQALCGVGKIDKALLL 126
+IQ G +AL L
Sbjct: 128 ALIQGYGRKGLFKEALEL 145
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 28/177 (15%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N A K++D M + N+ TYT L + ++ +K+ G P+ +
Sbjct: 65 NSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSW 124
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID-- 97
TY A++ G+ + G E +EL +E G +V T L + ++D
Sbjct: 125 TYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEM 184
Query: 98 --IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P +T+N ++ KA +L M E G P+ Y+ ++ ++
Sbjct: 185 DTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKE 241
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 30/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A+K++D+M NG +PNV Y+ L EA + VK GLK D
Sbjct: 278 FCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLD 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNE--------------AIERGVTPNVVTLIHLHNVI 96
YT +M+ FC+ G ++E M+LL E I RG++ + L +
Sbjct: 338 TVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLD 397
Query: 97 DIG----HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G H+ + ++ ++ ALC G+++KA+ L +M E G P ++ L+ +L
Sbjct: 398 QWGSEGVHLNKG-SYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRL 453
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 32/150 (21%)
Query: 11 ARKVIDYMFDN-GYHPNVTTYTILE-----------AYEMLMNVKNDGLK-PDVYTYTAV 57
+RK++ Y N G PN + IL A+ ++ +K G+ P+ TY+ +
Sbjct: 179 SRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTL 238
Query: 58 MDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
MD RS E +EL + I + G++P+ +TFN +I C
Sbjct: 239 MDCLFAHSRSKEAVELFEDMISKEGISPD------------------PVTFNVMINGFCR 280
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++++A +L M ++G P+ Y L+
Sbjct: 281 AGEVERAKKILDFMKKNGCNPNVYNYSALM 310
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EAR V+D M G N Y L +A M ++ + G KPD
Sbjct: 59 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 118
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
++T+ +++ G CKV + E + L + + GV N +T LIH ++
Sbjct: 119 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 178
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G IT+N +I+ALC G I+K L L M G P+ + LI L
Sbjct: 179 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 234
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 33/165 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + + M G +PN + IL A E L ++ + GL PD+
Sbjct: 200 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 259
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++++G CK GR+ E + L ++ G+ P+ IT+N +I
Sbjct: 260 VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD------------------AITYNTLI 301
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRT----LYDTLIKKLDQQ 152
C G D A LLL + G IP+ L IK+ DQ+
Sbjct: 302 SWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
+ M G P++ TY L A E++ ++ G +P+V TYT ++D FCK
Sbjct: 3 ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62
Query: 65 GRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDIGHIPRTITF 107
GR E +L+E +G+ N V L ++ G P TF
Sbjct: 63 GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N++I LC V K ++AL L M G I + Y+TLI
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 161
>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
Length = 478
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 34/169 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
AR ++ M G+ P TY +L +A + N+ KPDV +Y +
Sbjct: 148 ARSLLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIP----KPDVCSYNTI 203
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGH 100
+DG C+ GR E +++ +E + + + P VV T+IH H + G
Sbjct: 204 IDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGV 263
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T++++I LC G+ AL LL M + K+P+ Y ++I L
Sbjct: 264 SPNLVTYSSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGL 312
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + M P V TYT + +A ++ + G+ P++
Sbjct: 208 CRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNL 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY++++DG CK GR+ +ELL+ ++ PN TIT+++VI
Sbjct: 268 VTYSSLIDGLCKGGRATSALELLDRMVKEKKLPN------------------TITYSSVI 309
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC + +A+ +L M G+ P L+ LI L
Sbjct: 310 DGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGL 347
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C A +++D M PN TY+ + EA E+L ++ G KPD
Sbjct: 278 CKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDA 337
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ ++ G C GR+ E L+E + G+ PN VT LH I+ N V+
Sbjct: 338 GLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTW-SLHARIN----------NTVL 386
Query: 112 QALCGVGKIDKAL 124
ALC G++ +A
Sbjct: 387 TALCDKGELGRAF 399
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 28/152 (18%)
Query: 23 YHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71
+ P V +Y+I+ EA ++ +K G+ P V +YT+++ GFC G+ E
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAK 297
Query: 72 ELLNEAIERGVTPNVVTLIHLHNV-----------------IDIGHIPRTITFNNVIQAL 114
L NE + +GV PNVVT L +V I G +P +T+N++I+
Sbjct: 298 RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGF 357
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C VG ++ A L M G P Y LI
Sbjct: 358 CLVGDLNSARELFVSMPSKGCEPDVICYTVLI 389
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+++ + M + G PNV T+ +L EA ++L + G+ P+
Sbjct: 287 FCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPN 346
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++++GFC VG N EL +G P+V I + +
Sbjct: 347 LLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDV------------------ICYTVL 388
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I C K+++A+ L M + GK P Y L+ L Q
Sbjct: 389 INGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 429
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 69/216 (31%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN N E V+ + GY P++ TYT L +A + ++ G P
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP 199
Query: 50 DVYTYTAVMDGFCKVG-----------------------------------------RSN 68
+ TY +M G C+ G R +
Sbjct: 200 NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRED 259
Query: 69 EVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVI 111
E +L E +G+TP V+ +LIH + +++ G P +TFN +I
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLI 319
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC GK+ +A LL +M + G +P+ Y++LI+
Sbjct: 320 DVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIE 355
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA K+ + M G P+V TY L +A ++ +K G+ D
Sbjct: 392 YCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGD 451
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
+Y Y ++G CK G E MEL N+ + ++ + + G +
Sbjct: 452 LYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFE 511
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +T+N +I C G++ KA +L M ++G P + Y TLI+
Sbjct: 512 KLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 565
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
N N ++ + N N+T + + ++M P + ++T ++ G K
Sbjct: 52 NFNTPISFQQQLSMFLHNCKTGNITATQAFQFFHLMMY---SNPTPPLSSFTHLLSGLAK 108
Query: 64 VGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTIT 106
+ ++V L N+ G++P+ TL L N ++ G+IP +T
Sbjct: 109 IKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVT 168
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I+ LC +I KA LL M + G P+ Y TL+K L
Sbjct: 169 YTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGL 211
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ + + P+V TY I+ +A + ++ +G PD
Sbjct: 498 CKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDK 557
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
TY ++ GF + + +V+ELL+ ++R V+ +V L H
Sbjct: 558 ITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNILRH 597
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 35/159 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C EAR V D M G +PNV +YTI+ + +++++ DG+
Sbjct: 335 CKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLG---DGIA 391
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD+YT+ ++ + G ++ M + NE + GV P+VVT +
Sbjct: 392 PDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT------------------YR 433
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI ALC +GK+D A+ M + G P + Y LI+
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQ 472
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M + G PN TY L EA + ++ + PDV
Sbjct: 265 CKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 324
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T + +M CK G+ E ++ + +G PNV + L+ + ++ D+
Sbjct: 325 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDL 384
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I+A G +DKA+++ M +HG P Y T+I L
Sbjct: 385 MLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGL--KPDVYTYTAVMDGFCKVGRSN 68
G P+V +Y+IL +A ++L + G PDV Y+ V+DGF K G N
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVN 236
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ +L E ++RG+ P+ V T+++V+ ALC +DKA L
Sbjct: 237 KACDLFKEMVQRGIPPDFV------------------TYSSVVHALCKARAMDKAEAFLR 278
Query: 129 LMYEHGKIPSRTLYDTLI 146
M G +P+ Y+ LI
Sbjct: 279 QMVNKGVLPNNWTYNNLI 296
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + + D M +G P++ T+ +L +A + +++ G+KPD
Sbjct: 369 YATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 428
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------------------------- 85
V TY V+ C++G+ ++ ME N+ I++GV P+
Sbjct: 429 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELIS 488
Query: 86 -----------------VVTLIHLHNVID----------IGHIPRTITFNNVIQALCGVG 118
+ L L V+D +G P + ++ ++ C VG
Sbjct: 489 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVG 548
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K++KAL + M G P+ +Y TL+
Sbjct: 549 KMEKALRVFDAMVSAGIEPNDVVYGTLV 576
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+ + D + G HP Y++L +A + + + G++P+
Sbjct: 510 CKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPND 569
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +++G+CK+GR +E + L E +++G+ P+ TI +N +I
Sbjct: 570 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPS------------------TILYNIII 611
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L G+ A + M E G ++ Y+ +++ L
Sbjct: 612 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGL 649
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL+ ++ ++ GFC+ R++E +++L LH ++G +P
Sbjct: 141 GLRVNIIIANHLLKGFCEAKRTDEALDIL-----------------LHRTPELGCVPDVF 183
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLI 146
+++ ++++LC GK +A LL +M E G + P Y T+I
Sbjct: 184 SYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVI 226
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C+ +D +A +V+D M NG PNV Y T+++AY E+L + +G+ PD+
Sbjct: 462 CHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDL 521
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
+ Y ++ G C+ + E LL + E+G+ PN T I+L+ +
Sbjct: 522 FCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKD 581
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G +P + + +I+ C VG +AL M E G IP Y +I L +
Sbjct: 582 MLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +V M + G P+ TYT+L EA + ++ + GL P+
Sbjct: 287 CQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNR 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYTA++DGF K G E + + +E I RG+ NVV T+N +I
Sbjct: 347 FTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV------------------TYNAMI 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G++ KA+ L M G P Y+ LI
Sbjct: 389 GGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLI 423
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 36/184 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+ + + M +G +PN TYT L EA + + GLK +
Sbjct: 321 FCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLN 380
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V TY A++ G K G + M L NE + G+ P+ T +N++ G++
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWT----YNLLIDGYLKSHDMAKAC 436
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T++ +I LC + KA +L M +G P+ +Y TLIK
Sbjct: 437 ELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAY 496
Query: 150 DQQP 153
Q+
Sbjct: 497 VQES 500
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + + M G P+ TY +L +A E+L +K L P +TY+ ++
Sbjct: 399 KAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
G C + E+L++ I GV PNV TLI L +I G +
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVL 518
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +N +I LC K+++A +LL M E G P+ Y I
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFI 563
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 32/158 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLK 48
+C + D +A ++ D M NG +PN+ Y L EA+++ + + G+
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGIS 730
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD Y Y ++DG K G + + L +EA ++ V G + FN
Sbjct: 731 PDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV----------------GSLS---AFN 771
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++I + C GK+ +A L M + P+ Y LI
Sbjct: 772 SLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILI 809
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 27/156 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + EA M + G P++ Y+ + EA + + G+ PD
Sbjct: 601 HCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPD 660
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ Y +++ GFCK G + +L +E + G+ PN+V L N D G+
Sbjct: 661 VFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLIN--DYGY---------- 708
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + +A L M G P +Y LI
Sbjct: 709 ----CKSGNLTEAFKLFDEMISKGISPDGYIYCILI 740
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ + A +++ M NG P++ Y L EA +L+++ G+KP+
Sbjct: 496 YVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPN 555
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVVTLIHLHNVIDIGH--------- 100
+TY A ++ + K G + + G+ P NV+ I + D+G+
Sbjct: 556 AHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFK 615
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IP ++ +I +L GK +A+ + + G +P LY++LI
Sbjct: 616 CMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 28/144 (19%)
Query: 13 KVIDYMFDNGYHPNVTTYT-ILEAY---------EMLMNVKNDGLKPDVYTYTAVMDGFC 62
KV M + P+V TYT +++A+ +M+++ KP+++TY A + G C
Sbjct: 228 KVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLC 287
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
+ G +E +E+ +E+G+ P+ GH T+ ++ C + +
Sbjct: 288 QTGAVDEALEVKKLMMEKGLGPD-------------GH-----TYTLLVDGFCKQKRSKE 329
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLI 146
A L+ M G P+R Y LI
Sbjct: 330 AKLIFESMPSSGLNPNRFTYTALI 353
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 55/171 (32%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EAR++ D M D PN+ TYTIL EA ++ ++++ + P+
Sbjct: 777 FCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 836
Query: 51 VYTYTAVM-----------------------------------DGFCKVGRSNEVMELLN 75
TYT+++ +CK G+S E ++LLN
Sbjct: 837 TLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLN 896
Query: 76 EAIERGVTPNVVTLIHLHNVID--IGHIPRTITFNNVIQALCGVGKIDKAL 124
+++ G+ +V D I H+ + + V++ L +GK + +L
Sbjct: 897 KSLVEGIKLE-------DDVFDALIFHLCKEKQISTVLELLSEMGKEELSL 940
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D A ++ M + G P+ TY+ L +A+ + N+ GL+PD
Sbjct: 445 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPD 504
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYT+++DG CK G + L ++ ++ GV P+VVT ++ +
Sbjct: 505 EFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVT------------------YSVL 546
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L + +A LLF +Y IP+ T YD L+
Sbjct: 547 INGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALM 582
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A + M P+V Y L EA E+L ++ GLKPD
Sbjct: 375 FCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 434
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TY+ ++ +CK ++ EL + +E+GV P+ +T L
Sbjct: 435 VVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFK 494
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
N+I +G P T+ ++I C G ++ AL L M + G +P Y LI L +
Sbjct: 495 NMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSK 552
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M + G PN+ T+ + +A ++ + +GL PD +Y ++
Sbjct: 244 AERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVG 303
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT-------------- 104
G+CK G S+E + + E ++G+ P+VVT L H + G++ R
Sbjct: 304 GYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQM 363
Query: 105 --ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+TF +I C G +D ALL + M + PS Y+ LI
Sbjct: 364 NEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALI 407
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ M G PNV TY L A ++ ++ GLKP++
Sbjct: 201 CGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNL 260
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI--- 98
T+ ++++G CK G+ + ++ +E + G+ P+ V+ L H + +
Sbjct: 261 VTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAE 320
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P +TF ++I +C G +++A+ L+ M E G + + LI
Sbjct: 321 MTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALI 372
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+ D M +G PNV TY IL EA +L +++ G P+V TY ++
Sbjct: 174 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 233
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
F + G + L+ E G+ PN+V TFN+++ +C GK
Sbjct: 234 AFFRAGEVDGAERLVGMMREGGLKPNLV------------------TFNSMVNGMCKAGK 275
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ A + M G P Y+TL+
Sbjct: 276 MEDARKVFDEMVREGLAPDGVSYNTLV 302
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA V M G P+V T+T L A ++ ++ GL+ +
Sbjct: 305 YCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMN 364
Query: 51 VYTYTAVMDGFCK-----------------------------------VGRSNEVMELLN 75
T+TA++DGFCK VGR +E ELL+
Sbjct: 365 EVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLH 424
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
E +G+ P+VVT + +++ G +P IT++++I+ LCG
Sbjct: 425 EMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEK 484
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ A +L M + G P Y +LI
Sbjct: 485 RLSDAHVLFKNMIKLGLQPDEFTYTSLI 512
Score = 35.4 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 44/174 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLM---------- 40
+C + + A + D M G P+V TY++L EA ++L
Sbjct: 515 HCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPA 574
Query: 41 NVKNDGL-----KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV 95
N K D L K ++ + A++ GFC G NE ++ ++R + +++V
Sbjct: 575 NTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDG----SVYSV 630
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ GH C G + KAL M + G P+ T +LI+ L
Sbjct: 631 LIHGH--------------CRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGL 670
>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial [Vitis vinifera]
gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
Length = 454
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA+ ++ M G++P V +L A EM+ + +G PD
Sbjct: 222 WCAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPD 281
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V T ++++ CK G + +++ N+ GV+PNV T LH
Sbjct: 282 VETLNSMLEAICKAGEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILH 341
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I+ GH P + +I+ALC G+ D A M G P+R +Y LI
Sbjct: 342 RSIEDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLI 394
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 52/167 (31%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-------------- 80
AY ++ + G+ P+ TY+ +++G+C G+ E + L E +
Sbjct: 196 AYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVD 255
Query: 81 ---------------------GVTPNVVTL----------------IHLHN-VIDIGHIP 102
G P+V TL I ++N V +G P
Sbjct: 256 GLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDVCRLGVSP 315
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ +I A C G+ID+A +L E G P +LY +IK L
Sbjct: 316 NVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKAL 362
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 63/207 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYE--------------MLMN------ 41
C EARK+ D M G P++TTY T+L Y M+ N
Sbjct: 123 CKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDH 182
Query: 42 -------------------------VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
++ GL P+ Y V+DG CK+GR ++ M +
Sbjct: 183 HVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQ 242
Query: 77 AIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
I++G+TPNVV +LIH + ++D G P + FN ++ +LC G+
Sbjct: 243 MIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGR 302
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ L L+ G P Y TLI
Sbjct: 303 VIESKKLFDLLGHIGVNPDVITYSTLI 329
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E++K+ D + G +P+V TY+ L A ++L + + GLKPD
Sbjct: 298 CKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDS 357
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY+ +++G+CK+ R + + L E GV P+++T
Sbjct: 358 VTYSTLINGYCKINRMEDALALFKEMESNGVNPDIIT 394
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 52/158 (32%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LI 90
+DG++PDV TY ++MD CK G+ E ++ + ++RG+ P++ T L+
Sbjct: 105 SDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALV 164
Query: 91 HLHNVIDI---------------------------------------GHIPRTITFNNVI 111
+H+++ + G P + + VI
Sbjct: 165 EMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVI 224
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC +G++D A+L M + G P+ +Y +LI L
Sbjct: 225 DGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHAL 262
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 18 MFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
M D P+ TY + +A + M V + P+ +TY ++M G+C G+S +
Sbjct: 37 MLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTVMVMPNCFTYNSIMHGYCSSGQSEKA 96
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+ + + G+ P+VV T+N+++ LC GK +A + M
Sbjct: 97 IGIFRKMCSDGIEPDVV------------------TYNSLMDYLCKNGKCTEARKIFDSM 138
Query: 131 YEHGKIPSRTLYDTLI 146
+ G P T Y TL+
Sbjct: 139 VKRGLKPDITTYGTLL 154
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNV 95
PDV +Y ++DG K G ++ +E ++R V+P+ VT + V
Sbjct: 9 PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + +P T+N+++ C G+ +KA+ + M G P Y++L+ L
Sbjct: 69 LTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYL 122
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A K++ M G P+ TY+ L +A + ++++G+ PD
Sbjct: 332 YCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPD 391
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ TY ++ G + R+ EL E G + T
Sbjct: 392 IITYNIILHGLFRTRRTAAAKELYARITESGTQLELST 429
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 30/159 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
Y N N A ++ + M + G PN YT L +A + ++ DG++
Sbjct: 213 AYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVQ 272
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P+ TY +V+D +VG N LL E + G+ P++ ITF+
Sbjct: 273 PNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDL------------------ITFS 314
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ C +DK+ LL +MYE G +P LY++L++
Sbjct: 315 TIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLE 353
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 63/207 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ D M G+ P++ T+ I E +L +K++GLKPD+
Sbjct: 503 CKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDI 562
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI--- 98
TY ++DG+CK ++ E L E ++ G+ PN V LI ++ + I I
Sbjct: 563 VTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDT 622
Query: 99 ----GHIPRTITFNN-----------------------------------VIQALCGVGK 119
G P +T+N+ +IQ C +GK
Sbjct: 623 MKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGK 682
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
ID+A++ M+ G P++ Y TL+
Sbjct: 683 IDEAVMYFKEMHSRGIPPNKMTYTTLM 709
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 68/168 (40%), Gaps = 29/168 (17%)
Query: 11 ARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
ARKV M D P+V TYT + A+ ML ++ G++P V TY +M
Sbjct: 194 ARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLM 253
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
D CK GR E L +E V P++VT LI L + G
Sbjct: 254 DALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGIT 313
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + +N +I C G +AL L M G + Y+ + K L
Sbjct: 314 PNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKAL 361
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ + G NV T L EA ++L + N G++ D
Sbjct: 433 CKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDR 492
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TY ++ G CK + +E ++L ++ I+RG P++ T I LH ++G +
Sbjct: 493 ITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQ 552
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I C + KA L + ++G P+ +Y+ LI
Sbjct: 553 MKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALI 604
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 63/184 (34%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D +A + + + NG PN Y L +A +L +K +G++P
Sbjct: 572 YCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPT 631
Query: 51 VYTYTAVM-----------------------------------DGFCKVGRSNEVMELLN 75
TY ++M GFCK+G+ +E +
Sbjct: 632 PVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFK 691
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
E RG+ PN +T L ++ +G +P ++++N +I C V
Sbjct: 692 EMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVD 751
Query: 119 KIDK 122
+DK
Sbjct: 752 SLDK 755
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 29/164 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKND------------GLKPD 50
C + + A K++D M G + + + + A+ + + D LKP+
Sbjct: 362 CKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPN 421
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TA + CK G+ E E+ + + +G+ NV T LIH L
Sbjct: 422 DALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLK 481
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+++ G IT+N +IQ C K+D+A+ L M + G P
Sbjct: 482 AMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKP 525
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA M G PN TYT L EA ++ + + G+ PD
Sbjct: 677 FCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPD 736
Query: 51 VYTYTAVMDGFCKVGRSNEVME 72
+Y ++ GFC+V ++++E
Sbjct: 737 SVSYNTLISGFCEVDSLDKMVE 758
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + EA VI M D P+ +Y L EA+ + + +G++P
Sbjct: 343 YCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPT 402
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHN--------- 94
V TY ++ G C+VG ++ +++ + ++RGV P+ V L + N
Sbjct: 403 VLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWK 462
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G ITFN +I LC +GK+ +A + M + G P Y TLI
Sbjct: 463 DILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 515
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +++D M G N+ L EA ++ + + LKPD
Sbjct: 308 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 367
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+Y ++DG+C+ G ++E L ++ ++ G+ P V +T+N +
Sbjct: 368 SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTV------------------LTYNTL 409
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ LC VG D AL + LM + G P Y TL+ L
Sbjct: 410 LKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGL 448
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-LKP 49
Y + D A+ V+ +M + G NV TYT+L EA ++L ++ + L P
Sbjct: 237 YVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVP 296
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
D Y ++DG+C+ G+ ++ + LL+E + G+ N+ L N
Sbjct: 297 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 356
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D P + ++N ++ C G +A L M + G P+ Y+TL+K L
Sbjct: 357 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGL 413
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------- 91
G PD +TY ++ G+ G +E L +E + RG+ PN+VT LI+
Sbjct: 710 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRA 769
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
H + G P +T+N +I C +G +D A L M E G PS
Sbjct: 770 QRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPS 819
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ D M G PN+ TY L A + + GL P+V TY ++
Sbjct: 733 EAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLI 792
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHIPRT 104
DG+CK+G + +L ++ IE G++P++ L+ ++ +G +P++
Sbjct: 793 DGYCKIGNMDAAFKLKDKMIEEGISPSIQCNLLESVSMWLVGILPKS 839
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC ++ +A KV M P++ Y ++E ++L + GL P+
Sbjct: 518 YCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPN 577
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY A++DG+CK G ++ E E G++ N+ I + +
Sbjct: 578 IVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANI------------------IICSTM 619
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIP 137
+ L +G+ID+A LL+ M +HG P
Sbjct: 620 VSGLYRLGRIDEANLLMQKMVDHGFFP 646
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---T 88
++EA E+ +K+ G PD TY ++DG+CK + ++ ++P++ +
Sbjct: 489 MVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNS 548
Query: 89 LI-------HLHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LI L V D+ G P +T+ +I C G +DKA F M E+G
Sbjct: 549 LISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG 608
Query: 135 KIPSRTLYDTLIKKL 149
+ + T++ L
Sbjct: 609 LSANIIICSTMVSGL 623
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 26 NVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
N T+T Y+ ++ V G+ PDV+ + +++ FCK G+ +E + + GV PN
Sbjct: 170 NGETHTAHYVYQQMIRV---GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 226
Query: 86 VVTLIHLHN-VIDIGHIPRT----------------ITFNNVIQALCGVGKIDKALLLLF 128
+VT L N + +G + +T+ +I+ C K+D+A +L
Sbjct: 227 IVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLR 286
Query: 129 LMYEHGK-IPSRTLYDTLI 146
M E +P Y LI
Sbjct: 287 GMQEEAALVPDERAYGVLI 305
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 26/148 (17%)
Query: 10 EARKVIDYMFDNGYHPN--------VTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
EA ++ M D+G+ P+ + I + + L L P+ Y + G
Sbjct: 631 EANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGL 690
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
CK G+ ++ +++ L G +P T+ +I G +D
Sbjct: 691 CKTGKVDDARRFF-------------SMLSLK-----GFVPDNFTYCTLIHGYSAAGNVD 732
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A L M G +P+ Y+ LI L
Sbjct: 733 EAFRLRDEMLRRGLVPNIVTYNALINGL 760
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ID M G PN TY +L +A E+L N+ + G KP
Sbjct: 53 CKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPST 112
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI--- 98
Y V+ G C R + EL+ E + PN T +I+ L I +
Sbjct: 113 VNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEK 172
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +T+N +I LC +D A+ LL M +G P Y+TL+K L
Sbjct: 173 MSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGL 227
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V+D M G P+V TY IL +A E++ ++ +G P+
Sbjct: 18 CERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNN 77
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI--- 101
TY +MDG C G ++ +ELL G P+ V L D +
Sbjct: 78 VTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTE 137
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P TFN VI +LC G + +A+ LL M +HG + Y+ +I L +Q
Sbjct: 138 MLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQ 195
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++D M NG P+ T+ L +A E+ + + G P+
Sbjct: 228 CSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNS 287
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----------------TLIHLHNV 95
TY+ ++ G K + ++ +EL NE +G P+ + + + +
Sbjct: 288 ITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKL 347
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G P T+ +N ++ LC GK + A+ ++ M G +P Y LI+ L
Sbjct: 348 QDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGL 401
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------------IHLH 93
++P+ YTY ++ C+ G+ + + +L++ + RG P+VVT
Sbjct: 3 VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62
Query: 94 NVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ID+ G P +T+N ++ +CG G +D AL LL + HG PS Y+T++K L
Sbjct: 63 ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A ++++ M +G N+ TY + A +L +K+ G KPD+
Sbjct: 158 CRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDI 217
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY ++ G C R + EL++ + G P+ VT L
Sbjct: 218 VTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQ 277
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D G P +IT++ +I L K+D+AL L M G P + +Y L + L+
Sbjct: 278 MPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDK-IYQLLAECLN 332
>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
Length = 478
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 34/169 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
AR ++ M G+ P TY +L +A + N+ KPDV +Y +
Sbjct: 148 ARSLLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIP----KPDVCSYNTI 203
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGH 100
+DG C+ GR E +++ +E + + + P VV T+IH H + G
Sbjct: 204 IDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGV 263
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T++++I LC G+ AL LL M + K+P+ Y ++I L
Sbjct: 264 SPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGL 312
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + M P V TYT + +A ++ + G+ P++
Sbjct: 208 CRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNL 267
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY++++DG CK GR+ +ELL+ I+ PN+ IT+++VI
Sbjct: 268 VTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNM------------------ITYSSVI 309
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC + +A+ +L M G+ P L+ LI L
Sbjct: 310 DGLCKEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGL 347
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C A +++D M PN+ TY+ + EA E+L ++ G KPD
Sbjct: 278 CKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKPDA 337
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ ++ G C GR+ E L+E + G+ PN VT LH I+ N V+
Sbjct: 338 GLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTW-SLHARIN----------NTVL 386
Query: 112 QALCGVGKIDKAL 124
ALC G++ +A
Sbjct: 387 TALCDKGELGRAF 399
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 60/207 (28%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F A V M DNG PN TY L E +ML + GLKPD
Sbjct: 218 CKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDC 277
Query: 52 YTYTAVMDGFC--------------------------------KVGRSNEVMELLNEAIE 79
YTY ++++ C K G ++ M++ N+ +
Sbjct: 278 YTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQ 337
Query: 80 RGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
G++PNVV + + +I+ G P + FN+++ LC V K ++
Sbjct: 338 HGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWER 397
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKL 149
A L++ M + G P+ ++TLI L
Sbjct: 398 AEELVYEMLDQGICPNAVFFNTLICNL 424
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + + A +++ M D G PN + ++E ++ +++ G++PD
Sbjct: 390 CTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDA 449
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
++YT ++ G+C GR++E ++ + ++ IG P +T+N ++
Sbjct: 450 FSYTPLISGYCLAGRTDEAEKVFD------------------GMVSIGLSPTEVTYNTLL 491
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C +ID A L M G P Y+T++ L Q
Sbjct: 492 HGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQ 531
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPD 50
YC+ + +A + M G P V TY TIL EA E+ +N+ N G K D
Sbjct: 494 YCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCD 553
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-- 98
+YTY +++G CK +E ++ +G+ N++T + + +D+
Sbjct: 554 IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFA 613
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P +T+ V + L G +++ L M ++G P+ + + L+++L
Sbjct: 614 AIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 669
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 81/211 (38%), Gaps = 64/211 (30%)
Query: 3 CNKNDFFEARKVI-DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND---GL 47
C+ EA V+ M + G P+ +Y+IL EA E+L + ND
Sbjct: 144 CDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSC 203
Query: 48 KPDVYTYTAVMDGFCK-----------------------------------VGRSNEVME 72
P+V TYT V+DG CK +G+ EV++
Sbjct: 204 PPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQ 263
Query: 73 LLNEAIERGVTPNVVT----------LIHLHNVIDI----GHIPRTITFNNVIQALCGVG 118
+L + RG+ P+ T L +H+ +D+ G P FN A G
Sbjct: 264 MLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCG 323
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IDKA+ + M +HG P+ Y LI L
Sbjct: 324 MIDKAMDIFNKMRQHGLSPNVVNYGALIDAL 354
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA KV D M G P TY L +AY + + G+ P
Sbjct: 459 YCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPG 518
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V TY ++ G + R +E EL I G ++ T
Sbjct: 519 VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQ 578
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G ITF +I AL G+ + A+ L + +G +P+ Y + + L ++
Sbjct: 579 SLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEE 637
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + EA VI M D P+ +Y L EA+ + + +G++P
Sbjct: 377 YCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPT 436
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHN--------- 94
V TY ++ G C+VG ++ +++ + ++RGV P+ V L + N
Sbjct: 437 VLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWK 496
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G ITFN +I LC +GK+ +A + M + G P Y TLI
Sbjct: 497 DILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +++D M G N+ L EA ++ + + LKPD
Sbjct: 342 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+Y ++DG+C+ G ++E L ++ ++ G+ P V +T+N +
Sbjct: 402 SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTV------------------LTYNTL 443
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ LC VG D AL + LM + G P Y TL+ L
Sbjct: 444 LKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGL 482
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + EA ++ D M G PN+ TY L A + + GL P+
Sbjct: 759 YSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPN 818
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++DG+CK+G + +L ++ IE G++P+VV T++ +
Sbjct: 819 VVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVV------------------TYSAL 860
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I LC G I++++ LL M + G Y TL++
Sbjct: 861 INGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQ 897
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-LKP 49
Y + D A+ V+ +M + G NV TYT+L EA ++L ++ + L P
Sbjct: 271 YVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVP 330
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
D Y ++DG+C+ G+ ++ + LL+E + G+ N+ L N
Sbjct: 331 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 390
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D P + ++N ++ C G +A L M + G P+ Y+TL+K L
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGL 447
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------- 91
G PD +TY ++ G+ G +E L +E + RG+ PN+VT LI+
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRA 803
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
H + G P +T+N +I C +G +D A L M E G PS Y LI
Sbjct: 804 QRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALING 863
Query: 149 L 149
L
Sbjct: 864 L 864
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC ++ +A KV M P++ Y ++E ++L + GL P+
Sbjct: 552 YCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPN 611
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY A++DG+CK G ++ E E G++ N+ I + +
Sbjct: 612 IVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANI------------------IICSTM 653
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIP 137
+ L +G+ID+A LL+ M +HG P
Sbjct: 654 VSGLYRLGRIDEANLLMQKMVDHGFFP 680
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 24/123 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPDV 51
C + A+++ + G PNV TY T+++ Y + N+ +G+ P V
Sbjct: 795 CKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSV 854
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------LHNVIDI 98
TY+A+++G CK G M+LLN+ I+ GV ++ TL+ +H + D+
Sbjct: 855 VTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDM 914
Query: 99 GHI 101
HI
Sbjct: 915 MHI 917
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---T 88
++EA E+ +K+ G PD TY ++DG+CK + ++ ++P++ +
Sbjct: 523 MVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNS 582
Query: 89 LI-------HLHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LI L V D+ G P +T+ +I C G +DKA F M E+G
Sbjct: 583 LISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG 642
Query: 135 KIPSRTLYDTLIKKL 149
+ + T++ L
Sbjct: 643 LSANIIICSTMVSGL 657
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 26 NVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
N T+T Y+ ++ V G+ PDV+ + +++ FCK G+ +E + + GV PN
Sbjct: 204 NGETHTAHYVYQQMIRV---GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 260
Query: 86 VVTLIHLHN-VIDIGHIPRT----------------ITFNNVIQALCGVGKIDKALLLLF 128
+VT L N + +G + +T+ +I+ C K+D+A +L
Sbjct: 261 IVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLR 320
Query: 129 LMYEHGK-IPSRTLYDTLI 146
M E +P Y LI
Sbjct: 321 GMQEEAALVPDERAYGVLI 339
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNV----------KNDGLKPD 50
+C E + V M G P+V TY ++++ Y ++ V G+ PD
Sbjct: 275 FCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPD 334
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y +++GFCK+ + ++ M L NE + + PNVVT L +
Sbjct: 335 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVD 394
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D G P +T+N++I AL ++DKA+ L+ + G PS Y LI L
Sbjct: 395 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGL 450
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G PNV TY+ L +A ++ + + +KPD
Sbjct: 206 CKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDG 265
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HNV 95
YT+ ++DGFCK + E + +++G+ P+VVT L N
Sbjct: 266 YTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNT 325
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G + P ++N +I C + K+DKA+ L M+ IP+ Y++LI L +
Sbjct: 326 MAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKS 383
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 17/157 (10%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++D M D G PN+ TY + +A ++ K+ G++P +YTYT ++D
Sbjct: 389 ALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILID 448
Query: 60 GFCKVGRSNEVMELLNEAI----ERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC 115
G CKV + + N I ++G+ ++L L + D IP +T+ I++L
Sbjct: 449 GLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSL--LSKMKDSSCIPNAVTYEITIRSLL 506
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ DKA L M G + Y K+ Q
Sbjct: 507 DNNENDKAEKLFREMITRGLLNRSASYPCSSMKIHQS 543
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 28/153 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G+H + +Y L A ++L V ++ + Y V+ G CK N+
Sbjct: 155 GFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDA 214
Query: 71 MELLNEAIERGVTPNVVT----------------LIHLHNVIDIGHI-PRTITFNNVIQA 113
+L +E + +G++PNVVT I L N I + +I P TFN ++
Sbjct: 215 FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDG 274
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C K+ + + +M + G IP Y++L+
Sbjct: 275 FCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLM 307
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 34/176 (19%)
Query: 8 FFEARKVIDY---MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
FF A + I++ M +G P++ +Y IL EA+ + + PD+ T
Sbjct: 105 FFMAGRAIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMT 161
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VI 96
Y +MDG+CK+G++ E L+ E ++ G PNV T + N +I
Sbjct: 162 YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMI 221
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ +P +TFN +I C G ++ A+ L M + G + Y+TLI L ++
Sbjct: 222 ESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKK 277
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 31/177 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +EA+ ++ + GY PNV TY+I+ EA+E+ M + P+
Sbjct: 169 YCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPN 228
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
T+ ++ GFCK G + ++L E + G +V T + L
Sbjct: 229 AVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLF 288
Query: 94 NVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ G P +T+N++IQ + + L LL M+ G P Y+ LI L
Sbjct: 289 NKLEGAGLTPTIVTYNSLIQGF--SERANDGLRLLCHMHAEGCKPDVITYNCLISGL 343
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 25/138 (18%)
Query: 22 GYHPNVTTYTIL---------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
G P + TY L + +L ++ +G KPDV TY ++ G C R +
Sbjct: 295 GLTPTIVTYNSLIQGFSERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQR 354
Query: 73 LLNEAIERGVTPNVVTLIHL-------------HNVIDIGHIPRTITFNNVIQALCGVGK 119
L N PNV T L N++D P TFN +I A C G
Sbjct: 355 LFN---GMACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFNTIILAFCKAGA 411
Query: 120 IDKALLLLFLMYEHGKIP 137
+ A ++ M +HG P
Sbjct: 412 MHDAREVMKDMLKHGFYP 429
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 36/182 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC + EA +V M ++ PN T+ L +A ++ ++ G K
Sbjct: 203 CYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKA 262
Query: 50 DVYTYTAVMDGFC-KVGRSNEVMELLNEAIERGVTPNVVT------------------LI 90
+ TY ++D C K G ++L N+ G+TP +VT L
Sbjct: 263 TIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGLRLLC 322
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
H+H G P IT+N +I LC +++ A L M P+ T ++ LI+ L
Sbjct: 323 HMHAE---GCKPDVITYNCLISGLCSANRVEDAQRLFNGM---ACAPNVTTFNFLIRGLC 376
Query: 151 QQ 152
Q
Sbjct: 377 AQ 378
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A + V P+ +TY ++ GFCK G+ ++ + + ++ G+ PN T+
Sbjct: 8 QALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTM---- 63
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
N ++ LC +G++ AL L M +P+ ++ L++
Sbjct: 64 --------------NTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLR 103
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYT 55
C+ N +A+++ + M PNVTT+ L + E N+ + PD+ T+
Sbjct: 344 CSANRVEDAQRLFNGM---ACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFN 400
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
++ FCK G ++ E++ + ++ G PN T L + I
Sbjct: 401 TIILAFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALAHGIQ 442
>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 447
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+K++ M G +V TY + +A + M +K G++P+
Sbjct: 286 CKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNK 345
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYTA++DG CK GR +L + +G +V T+N +I
Sbjct: 346 YTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVR------------------TYNVMI 387
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G DKAL + M ++G IP+ +D +I+ L
Sbjct: 388 SGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSL 425
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K++ + D P+V Y+ + +AY+ + G+ P+V TY+ ++
Sbjct: 189 AVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIW 248
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT--------------------LIHLHNVIDIG 99
GFC G+ LLNE I + + PNV T L +H+ G
Sbjct: 249 GFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHK---G 305
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+N+V+ LC +DKA L M + G P++ Y LI L
Sbjct: 306 QPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGL 355
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 71/157 (45%), Gaps = 25/157 (15%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
E K++ Y+ ++P + + M VK G++P++ T +++ FC +G+
Sbjct: 67 EFGKILGYLVKMKHYPTAISLS------RQMEVK--GIEPNLVTLNILINCFCHLGQMAF 118
Query: 70 VMELLNEAIERGVTPNVVTL----------------IHLHN-VIDIGHIPRTITFNNVIQ 112
+L + ++ G P+ +TL +H H+ V+ G +++ ++
Sbjct: 119 SFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLN 178
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC +G+ A+ LL ++ + P +Y T+I L
Sbjct: 179 GLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGL 215
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAYEMLMNVKND----------GLKP 49
C+C+ + V+ + GY P+ +T T+++ + VK G +
Sbjct: 109 CFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQM 168
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI- 98
+ +Y +++G CK+G + ++LL +R P+VV T+I ++ D
Sbjct: 169 NQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFF 228
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P IT++ +I C G++ A LL M P+ Y+ LI L ++
Sbjct: 229 SEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKE 288
>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
Length = 475
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
+CN+ D EAR++ M NG P++ TY +I EA ++ GL PD
Sbjct: 322 HCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPD 381
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y+Y A++ G C G+ + + L E +RG PN+V + +
Sbjct: 382 IYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLV------------------AYTAL 423
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ ++A L M G P LY L+ L
Sbjct: 424 ISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 462
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 28/162 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
Y + D +++ M + G P V TYTIL + + +K+ L
Sbjct: 111 AYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSG 170
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIPRT---- 104
DVY Y++V++ +C+ G E+ +E + G+ PN T L N IG +
Sbjct: 171 DVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLV 230
Query: 105 ------------ITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
I FN +I C +DKAL + +M + G
Sbjct: 231 TDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMG 272
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 74/209 (35%), Gaps = 63/209 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEML----------- 39
YC + A +V D NG PN TY L EA EML
Sbjct: 181 AYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGI 240
Query: 40 -------------------------MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
M ++ G++ DVYTY + G + R +E LL
Sbjct: 241 NQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL 300
Query: 75 NEAIERGVTPNVV---TLIHLH-NVIDI-------------GHIPRTITFNNVIQALCGV 117
IE+GV PN V TLI +H N D+ G P +T+N ++
Sbjct: 301 RIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKK 360
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G I +A M + G +P Y L+
Sbjct: 361 GSIREAERFKNEMEKKGLVPDIYSYAALV 389
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 90/179 (50%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C + +A ++++ M G+ PNV T+T L +A+ + + V+++ KP+
Sbjct: 286 CKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPN 345
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH----------NVID 97
V TYTA++ G+C+ + N LL+ E+G+ PN TLI H ++++
Sbjct: 346 VLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMN 405
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P T+N ++ LC G++ +A +L +++G P + Y+ L+ + +Q
Sbjct: 406 LMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQ 464
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA K + M + G+ + T+T++ A + + GL+P+
Sbjct: 215 YCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPN 274
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHL 92
+ +T +++G CK G + E+L E + +G PNV T + L
Sbjct: 275 LINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFL 334
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V H P +T+ +I C K+++A +LL M E G +P+ Y TLI
Sbjct: 335 KLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLI 388
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA K+++ F NG P+ TY IL +A + + G++PD+
Sbjct: 427 CKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDI 486
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-----------------VVTLIHLHN 94
++YT ++ FC+ R E EA+ G+ P + + H
Sbjct: 487 HSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHR 546
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ D G P +IT+ +I LC K D+A L M E G +P TL
Sbjct: 547 LSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITL 597
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ A ++ M + G PN TYT L AY+++ + ++G P+
Sbjct: 356 YCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPN 415
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ TY A+++G CK GR E ++L + + G+ P+ T L +
Sbjct: 416 LCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFN 475
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ IG P ++ +I C ++ ++ + G IP+ Y ++I
Sbjct: 476 KMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMI 528
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 32/170 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT----------ILEAYEML---MNVKNDGLKPDVYTYTA 56
EA +++ M + G PN T ++E E+L M V+ G++PD +Y
Sbjct: 153 EAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVR--GVQPDSISYRV 210
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIG 99
++ +CK+G E + L+ +ERG + T L + ++D+G
Sbjct: 211 MVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMG 270
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P I F +I+ LC G I +A +L M G P+ + +LI L
Sbjct: 271 LEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +N E+ + G P TYT + A + + + G PD
Sbjct: 496 FCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPD 555
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
TY A++ G CK + +E L + IE+G+ P VT I L
Sbjct: 556 SITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITL 597
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 38/169 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ A K++++M NG +PNV Y+ L EA E+ +K+ GLKPD
Sbjct: 325 FCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPD 384
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN- 109
YT +++ FC+ GR +E MELL + E + VT NVI +G + R F
Sbjct: 385 TVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTF----NVI-LGGLCREGRFEEA 439
Query: 110 ---------------------VIQALCGVGKIDKALLLLFLMYEHGKIP 137
V+ +LC G++ KA L+ LM G +P
Sbjct: 440 XGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLP 488
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 29/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C EA ++ + M + P+ TY L A +++ +K +G P+
Sbjct: 290 CGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPN 349
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V+ Y+A+M+GFCK GR E E+ +E G+ P+ V TLI+ L
Sbjct: 350 VFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLK 409
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ + T+TFN ++ LC G+ ++A +L
Sbjct: 410 DMXENKCRADTVTFNVILGGLCREGRFEEAXGML 443
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 35/142 (24%)
Query: 24 HPNVTTYTIL-----------EAYEMLMN-VKNDGLKPDVYTYTAVMDGFC---KVGRSN 68
+PN+ TY+ L EA E+ V D + PD TY A+++GFC KV R+
Sbjct: 276 YPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRAL 335
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHN-------------VID----IGHIPRTITFNNVI 111
++ME + + G PNV L N V D +G P T+ + +I
Sbjct: 336 KIMEFMK---KNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLI 392
Query: 112 QALCGVGKIDKALLLLFLMYEH 133
C G++D+A+ LL M E+
Sbjct: 393 NFFCRAGRVDEAMELLKDMXEN 414
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 35 AYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
A+E++ +K + P++ TY+ +++G C GR E +EL E + +
Sbjct: 262 AFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQI---------- 311
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P +T+N +I C K+D+AL ++ M ++G P+ Y L+
Sbjct: 312 -------LPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALM 357
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 64/192 (33%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA++V D M G P+ YT L EA E+L ++ + + D
Sbjct: 360 FCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRAD 419
Query: 51 VYTYTAVMDGFCKVGRSNEVMELL----------NEA----------------------- 77
T+ ++ G C+ GR E +L N+A
Sbjct: 420 TVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVG 479
Query: 78 --IERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ RGV P+ T N ++ LC GK+ A++ L + E G
Sbjct: 480 LMLGRGVLPHFA------------------TSNELLVHLCEAGKVGDAVMALLGLLELGF 521
Query: 136 IPSRTLYDTLIK 147
P + L++
Sbjct: 522 KPEPNSWALLVE 533
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +++ M + +P+V T++ L EA E+ ++ G+ P
Sbjct: 121 FCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPT 180
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-- 98
TY +++DGFCK R N+ +L+ + +P+VVT L N ++I
Sbjct: 181 TITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFC 240
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + T+T+ +I C VG +D A LL +M G P+ + +++ L
Sbjct: 241 EMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 25/150 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID + +G+H + A + + + G+ PDV TY+ ++D FC+ GR + +L
Sbjct: 82 IIDRLCKDGHH--------IHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQL 133
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L + IER + P+VVT L N ++ G P TIT+N++I C
Sbjct: 134 LRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCK 193
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ A +L M P + TLI
Sbjct: 194 QDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 28/146 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M G P TY + +A ML ++ + PDV T++ ++
Sbjct: 164 EAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
+G+CK R + ME+ E RG+ N VT LIH L+ +I G
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVA 283
Query: 102 PRTITFNNVIQALCGVGKIDKALLLL 127
P ITF +++ +LC ++ KA +L
Sbjct: 284 PNYITFQSMLASLCSKKELRKAFAIL 309
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 24/174 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYT 55
C + +A ++D M + G+ P T L A +L ++ +K V Y
Sbjct: 21 CCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYN 80
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDI 98
A++D CK G L E ++G+ P+V+T L ++I+
Sbjct: 81 AIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIER 140
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+ +I AL GK+ +A + M G P+ Y+++I +Q
Sbjct: 141 QINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQ 194
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 22/104 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +PDV T+T +M+G C GR + + L++ +E G P
Sbjct: 5 GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP--------------------- 43
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I LC +G + AL LL M E +Y+ +I +L
Sbjct: 44 -YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRL 86
>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
Length = 414
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C + +A ++++ M + G P+ T IL + +E+L ++ DG+ P+
Sbjct: 93 CRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPN 152
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----VIDIGHI----- 101
V TYT+V+ G+CK GR + + N+ ++ G PN VT L N +D+
Sbjct: 153 VVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYW 212
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TFN++I C G++D A+ + M +H P+ + +I L Q
Sbjct: 213 QLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQ 271
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A V + M +G PN TY +L A M + PD
Sbjct: 163 YCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPD 222
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------------- 91
V T+ +++DG+C+ G+ ++ M + E + + PNV T +IH
Sbjct: 223 VVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLR 282
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L+ DI +P+T +N +I LC GK+D+A L++ M E G P + Y LI
Sbjct: 283 ELNMRADI--VPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILI 336
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 26/172 (15%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-KPDVYTYTAVMDGFCK 63
K +F R + Y ++N + + +A + + DGL PDV+++ V+ G C+
Sbjct: 36 KGSWFGCR-IEWYAYNNLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCR 94
Query: 64 VGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGH------------IPRT 104
VG + +EL+ E G +P+ +T L + V + GH +P
Sbjct: 95 VGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQV-NKGHEVLRRLQRDGVCMPNV 153
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI----KKLDQQ 152
+T+ +VI C G++ A + M + G P+ Y+ LI K LD +
Sbjct: 154 VTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDME 205
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
EA ++ +++ G PD YTYT ++ G C GR E + L ++ +E G P+ +T+
Sbjct: 312 EANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITI 367
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M + G HP+ TYTIL EA + + G +PD
Sbjct: 305 CKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDN 364
Query: 52 YTYTAVMDGFCKVGRSNEVMELL 74
T + + K G NEV +++
Sbjct: 365 ITINSFISCVLKAGMPNEVHQIM 387
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 43/174 (24%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M + G P + TYT++ EA + +++ +G +PD + YTA++
Sbjct: 129 EAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALI 188
Query: 59 DGFCKVGRSNEVMELLNEAIE----RGVTPNVVTLIH----------------------L 92
G K+G+ +E + LN+ +E RGV P+VV IH L
Sbjct: 189 SGLAKIGKLDEALVYLNQMVENGCARGVEPDVV--IHNLVIRQLCASGNLEDALAYFDEL 246
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +D+ H TFN ++ ALC + ++A+ + M E P+ Y +L+
Sbjct: 247 DDSLDLTH----FTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLV 296
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M + P + TYT L EA L G PD
Sbjct: 265 CKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDA 324
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNV--- 95
TYT+++DG CK+GR E E +E RG P+ VT L H V
Sbjct: 325 VTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQ 384
Query: 96 -IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G + T+T+N ++ LC G++ +A M E G + + Y L+
Sbjct: 385 MLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALM 436
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C++ + A ++ M D G PN+ +Y I+ +AY + L PD
Sbjct: 439 FCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPD 498
Query: 51 VYTYTAVMDGFC-KVGRSNEVMELLNEAIERGVTPNV-----------------VTLIHL 92
VYT+ + + G C ++ + +EL + +G +PN+ VTL
Sbjct: 499 VYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIF 558
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
H ++ G P + FN +I+ LC G++D+A L +F E P Y +L+ L +
Sbjct: 559 HEMVSRGVAPDVVVFNTLIRWLCIAGRVDEA-LEVFRELERRSAPDAWSYWSLLDALSR 616
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V++ G P+ TY + +A+++L + P
Sbjct: 52 CREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTT 111
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TYTA++DG K GR +E M +L + +E+G +P + T + + + G +
Sbjct: 112 VTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVD 171
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI----PSRTLYDTLIKKL 149
P + +I L +GK+D+AL+ L M E+G P +++ +I++L
Sbjct: 172 MLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQL 230
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +V M +G + TY I+ EAY + ++ G V TY+A+M
Sbjct: 377 KAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALM 436
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DGFC G + +EL ++RG PN+V ++N +I+ LC G
Sbjct: 437 DGFCSEGNVSAAVELFRRMLDRGCEPNLV------------------SYNIIIRGLCRAG 478
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
K+ KA + + P +++ + L Q+
Sbjct: 479 KLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQR 512
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGH- 100
PD+ +T V++G C+ R +E +L A+ G P+ VT L V D
Sbjct: 39 PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 98
Query: 101 ---------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+P T+T+ ++ L G++D+A+ +L M E G P+ Y +I L +
Sbjct: 99 LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSK 158
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HL 92
D TA+++G CK G+ + M LL+E +P++V L
Sbjct: 8 DTRVCTALLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCREKRLDEAFSVL 64
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+N I LC ++D A LL M E +P+ Y L+ L
Sbjct: 65 ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGL 121
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G PNV TY+ L +A ++ + ++ +KPDV
Sbjct: 238 CKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDV 297
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT+ ++D FCK G+ + ++L++E +RG PN+V T+++++
Sbjct: 298 YTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIV------------------TYSSIL 339
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
ALC ++DKA+ LL + + G P+ Y LI L
Sbjct: 340 DALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGL 377
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A D + G+ N +Y L A ++L V ++P+V
Sbjct: 168 CLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNV 227
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
Y+ ++DG CK N+ +L +E + +G++PNVVT L +G +
Sbjct: 228 VMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNK 287
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P TFN ++ C GKI AL L+ M++ G+ P+ Y +++ L
Sbjct: 288 MISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 342
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 30/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A K++D M D G PN+ TY+ + +A +L +K+ G++P+
Sbjct: 307 FCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPN 366
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++TYT ++DG C G+ + + + + +G VVT I +
Sbjct: 367 MHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVM------------------ 408
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
C G D+A LL M E+G IP Y+ LIK
Sbjct: 409 FYGFCKKGLFDEASALLSKMEENGCIPDAKTYE-LIK 444
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P + ++ K + V+ L + RG+ PN+V L N
Sbjct: 85 PPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSV 144
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKAL----LLLFLMYEHGKIPSRTLYDTLIK 147
++ +G+ P TITF +I+ LC G+I +AL L+ L ++ +I TL D L K
Sbjct: 145 FAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCK 204
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N+ A++V M G P+V Y+I+ EA + + + PD
Sbjct: 313 YCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPD 372
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT+++D CK GR + V +L +E ++RG P+V IT+NN+
Sbjct: 373 TVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDV------------------ITYNNL 414
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I ALC G +D+A+ L M + P+ + L+ L
Sbjct: 415 IDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGL 453
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 29/158 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + D M D G P+V TY L A + +K+ ++P
Sbjct: 382 CLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRP 441
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+VYT+T ++DG CKVGR +E + + +G NV RT T
Sbjct: 442 NVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNV----------------RTYTV-- 483
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I LC G +D+AL L M ++G I ++ +I+
Sbjct: 484 MINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIR 521
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 29/134 (21%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PNV Y+++ EAY++ + G+ PDV TY+ ++ GFC VG+ N ++
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAID 254
Query: 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
LLNE + + P++ T+ ++ ALC GK+ +A +L +M +
Sbjct: 255 LLNEMVLENINPDIY------------------TYTILVDALCKEGKVKEAENVLAVMVK 296
Query: 133 HGKIPSRTLYDTLI 146
+Y TL+
Sbjct: 297 ACVNLDVVVYSTLM 310
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + D + G+ + +Y IL A +L ++ ++P+V
Sbjct: 139 CLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNV 198
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y+ ++D CK +E +L E + +G++P+VVT ++ ++
Sbjct: 199 VIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVT------------------YSILV 240
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C VG++++A+ LL M P Y L+ L ++
Sbjct: 241 SGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKE 281
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 18/78 (23%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
++PD +T +++ FC G+ V+ + ++ +G+ P TIT
Sbjct: 89 VEPDYFTLNIIINCFCHFGQV------------------VLAFSGVSKILKLGYQPNTIT 130
Query: 107 FNNVIQALCGVGKIDKAL 124
N +++ LC GK+ +AL
Sbjct: 131 LNTLMKGLCLEGKVKEAL 148
>gi|255548041|ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545557|gb|EEF47061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 262
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 28/163 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ A +++ M + G+ P+ TYT L EAY++L +K G PD+
Sbjct: 40 CRRSQVNGAVGLLEDMLNKGFVPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI 99
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HLHN 94
Y ++ GFC+ GR+ + ++L + G PN+V TL+ +L
Sbjct: 100 VHYNTIISGFCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGICDQGMFDEAKSYLEE 159
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+I G P + +++ C VGKI++A ++ ++ +HG++P
Sbjct: 160 MILKGFSPHFSVSHALVKGFCIVGKIEEACGVVEVLLKHGEVP 202
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
AY++ + + PD+ +Y +M G C+ + N + LL + + +G P+ +T L N
Sbjct: 13 AYKLFNQMFKRDVLPDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGFVPDCLTYTTLLN 72
Query: 95 VID-----------------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ G P + +N +I C G+ A +L M +G +P
Sbjct: 73 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARKVLGDMECNGCLP 132
Query: 138 SRTLYDTLIKKLDQQ 152
+ Y TL+ + Q
Sbjct: 133 NLVSYRTLVAGICDQ 147
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +ARKV+ M NG PN+ +Y L EA L + G P
Sbjct: 109 FCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGICDQGMFDEAKSYLEEMILKGFSPH 168
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
A++ GFC VG+ E ++ ++ G P+ T I
Sbjct: 169 FSVSHALVKGFCIVGKIEEACGVVEVLLKHGEVPHADTWI 208
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C D A ++ M + + PNV Y+ + +A + ++ G+ P+
Sbjct: 223 CKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPN 282
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
++TY +++GFC GR +E LL E ER ++P+VVT L N
Sbjct: 283 LFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYN 342
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G IP TIT+N++I ++D A + +LM G P + LI
Sbjct: 343 EMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILI 395
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + EA++++ MF+ P+V T+++L EA E+ + G+ P+
Sbjct: 293 FCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPN 352
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
TY +++DGF K R + + +G +P+V+T + LH
Sbjct: 353 TITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLH 412
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G + TIT+ +I C +G ++ AL LL M G P+ +TL+ L
Sbjct: 413 EMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGL 468
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A+ + M + G PN+ TY + EA +L + + PDV T++ ++
Sbjct: 266 DAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLI 325
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI-----------GHI 101
+ K G+ E EL NE + RG+ PN +T + N +D G
Sbjct: 326 NALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCS 385
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P ITF+ +I CG ++D + LL M G + + Y TLI Q
Sbjct: 386 PDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQ 435
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKN-DGLKPD 50
C + EA ++D M ++G PN TY TI++ A +L ++ +KP+
Sbjct: 188 CREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPN 247
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V Y+A++DG K GR + L +E E+G++PN+ T +I+ L
Sbjct: 248 VVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLR 307
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + P +TF+ +I AL GK +A L M G IP+ Y+++I +Q
Sbjct: 308 EMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQ 366
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 28/152 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ F EA ++ + M G P+ TY + EA +M ++ + G PDV
Sbjct: 516 NEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVV 575
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNV 95
T+T +++G+CKVGR + +E+ E RG+ N + TLIH +
Sbjct: 576 TFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEM 635
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
I G P TIT N++ L ++ +A+ L
Sbjct: 636 ISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
N P+V TY IL EA E+ + + GL PD TY +V+DG CK R +E
Sbjct: 498 NDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDE 557
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + +G +P+VVT F +I C VG++ L +
Sbjct: 558 ATQMFDSMGSKGFSPDVVT------------------FTTLINGYCKVGRVGDGLEVFCE 599
Query: 130 MYEHGKIPSRTLYDTLIKKLDQ 151
M G + + Y TLI Q
Sbjct: 600 MGRRGIVANAITYRTLIHGFCQ 621
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 39/190 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ +N A ++ M G P+V T++IL + ++L + GL +
Sbjct: 363 FSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVAN 422
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHN 94
TYT ++ GFC++G N ++LL E I GV PNVVT + +
Sbjct: 423 TITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFK 482
Query: 95 V-------IDIGHI-----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
V +D H P T+N +I L GK +A L M G +P Y
Sbjct: 483 VMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITY 542
Query: 143 DTLIKKLDQQ 152
+++I L +Q
Sbjct: 543 NSVIDGLCKQ 552
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-------KPDVYT 53
C+C+ + A + G+HP++ T++ L + + ++ L KP+V
Sbjct: 120 CFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPNVIA 179
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113
+T +M+G C+ GR E + LL+ +E G+ PN IT+ ++
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPN------------------QITYGTIVDG 221
Query: 114 LCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
+C +G AL LL M E +I P+ +Y +I L
Sbjct: 222 MCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGL 258
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 40/167 (23%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKND-- 45
+C + A ++ M +G PNV T L E ++++ K D
Sbjct: 433 FCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLD 492
Query: 46 ------GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG 99
++PDV TY ++ G G+ +E EL E RG+ P+
Sbjct: 493 ASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPD-------------- 538
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TIT+N+VI LC ++D+A + M G P + TLI
Sbjct: 539 ----TITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLI 581
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDIGHI- 101
++Y++T ++ FC + + + + G P++VT L V + H
Sbjct: 110 NIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFF 169
Query: 102 -----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P I F ++ LC G++ +A+ LL M E G P++ Y T++
Sbjct: 170 HQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 219
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A ++ M NV Y + +A+++ ++ G+KPDV
Sbjct: 232 CKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDV 291
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+TY +++ C GR ++ LL++ IER + PNVVT L
Sbjct: 292 FTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 351
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I P +T+N++I C ++D+A + LM +P Y+TLIK
Sbjct: 352 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIK 404
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M PN+ TY L EA ++ + + PD
Sbjct: 336 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 395
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY ++ GFCK R E MEL E +RG+ N V TLI
Sbjct: 396 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 455
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P IT++ ++ LC GK++KAL++ + + P+ Y+ +I+ +
Sbjct: 456 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGM 511
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++D M + GY P+ T+ L EA ++ + G +PD
Sbjct: 161 YCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPD 220
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
++TY V++G CK G + + LL + + + NVV T+I H+ + D+
Sbjct: 221 LFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFN 280
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P T+N++I LC G+ A LL M E P+ +++LI ++
Sbjct: 281 KMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKE 339
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M G P+V TY L +A +L ++ + P+V
Sbjct: 267 CKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNV 326
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVIDIGH----- 100
T+ +++D F K G+ E +L +E I+R + PN+VT LI+ +H+ +D
Sbjct: 327 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTL 386
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+P +T+N +I+ C ++++ + L M + G + + Y+TLI+ L Q
Sbjct: 387 MVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 443
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 19/122 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---LHN----- 94
G +PD+ T +++++G+C R +E + L+++ +E G P+ V TLIH LHN
Sbjct: 146 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEA 205
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIK 147
++ G P T+ V+ LC G ID AL LL M E GKI + +Y+T+I
Sbjct: 206 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEANVVIYNTIID 264
Query: 148 KL 149
L
Sbjct: 265 GL 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+K+ M +G P++ TY+IL +A + ++ ++P++YTY +++
Sbjct: 450 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIE 509
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ + +L +GV PNV I + +I C G
Sbjct: 510 GMCKAGKVEDGWDLFCSLSLKGVKPNV------------------IIYTTMISGFCRKGL 551
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++A L M E G +P Y+TLI+
Sbjct: 552 KEEADALFREMKEDGTLPDSGCYNTLIR 579
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------ 94
++N G+ + YTY+ +++ FC+ + + +L + ++ G P++VTL L N
Sbjct: 106 QMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 165
Query: 95 -----------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
++++G+ P T+TFN +I L K +A+ L+ M G P Y
Sbjct: 166 RISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 225
Query: 144 TLIKKL 149
T++ L
Sbjct: 226 TVVNGL 231
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 29/157 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + A +++D M G NV Y I +A +++ ++ G+ PD
Sbjct: 479 CKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDA 538
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT V+D +C++G ++ +LL E ++RG+ P VV TFN ++
Sbjct: 539 ITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVV------------------TFNVLM 580
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
C +G ++ LL M E G +P Y+TL+K+
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQ 617
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K D M P+ TYT ++E + + + GLKPD TYT ++D
Sbjct: 382 ANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLID 441
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI-----------GHIP 102
+CK G L NE ++ G+TPN+VT L H +D G
Sbjct: 442 VYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQL 501
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N+++ +C G I++A+ L+ M G P Y T+I
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 29/136 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G N T+Y I+ EA+ +LM + PDV +Y+ V+DG+C +G +
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKA 312
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
++L+++ +G+ PN T+N++I LC +GK +A +L M
Sbjct: 313 LKLMDDMQIKGLKPN------------------RYTYNSIILLLCKIGKSFEAEKVLREM 354
Query: 131 YEHGKIPSRTLYDTLI 146
IP +Y TLI
Sbjct: 355 MSQKIIPDNVVYTTLI 370
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 41/165 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC D +A K++ M D G P V T+ +L M+GF
Sbjct: 548 YCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVL------------------------MNGF 583
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------NVIDIGHIPRT 104
C +G + LL +E+G+ P+ + TL+ H + + G P +
Sbjct: 584 CMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDS 643
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I+ C + +A L M E G +P+ T Y+ LIK+
Sbjct: 644 NTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRF 688
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ + +A K++D M G PN TY + EA ++L + + + PD
Sbjct: 303 YCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPD 362
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
YT ++ GF K+G + +E + + ++P+ +T L H
Sbjct: 363 NVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFH 422
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+ +I C G++ A L M + G P+ Y LI L
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGL 478
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMN-----------VKNDGLKPD 50
+C + +++ +M + G P+ TY L + N ++N G+ PD
Sbjct: 583 FCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD 642
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ G CK E L E IE+G P V ++N +
Sbjct: 643 SNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVT------------------SYNAL 684
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I+ KI +A L M HG + +Y+ +
Sbjct: 685 IKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFV 720
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +V+ M + G P +TTY IL EA+E + +K ++ DV TYT ++
Sbjct: 235 KALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMV 294
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
GF VG ++ NE + G+ +P T T+N +IQ LC
Sbjct: 295 HGFGVVGEIKRARKVFNEMVGEGI------------------LPSTATYNAMIQVLCKKD 336
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ A+L+ M + G +P+ T Y+ +I+ L
Sbjct: 337 SVENAVLMFEEMVKKGYVPNLTTYNVVIRGL 367
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 32/168 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K+ A + + M GY PN+TTY ++ +A E + +K DG +P+V
Sbjct: 333 CKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNV 392
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN--------------------VVTLIH 91
TY + FC G + + + E + +G PN VV
Sbjct: 393 QTYNVAIRYFCDAGDVEKGLSMF-EKMGQGSLPNLDTYNVLISAMFVRKKSEDLVVAGKL 451
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
L ++D G IPR TFN V+ L G A +L L + G++P +
Sbjct: 452 LLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKCGRLPRQ 499
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG---- 46
+C D A ++ M ++G P TTY I+ A+ + +K G
Sbjct: 207 WCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDE 266
Query: 47 -LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
KPD+ +YT ++ G G+ ++ +L +E + G TP+V T L VI
Sbjct: 267 SCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDA 326
Query: 97 -----DI---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
D+ ++P +T+ +I+ LC VGKID+A+ L+ M G P Y+ LI+
Sbjct: 327 VTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIR 385
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
PDV TY + DG+C+ ++ ++LL + E GVTP T I L G I
Sbjct: 195 PDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNF 254
Query: 102 ---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +++ +I L G++DKA L M + G PS Y+ LI
Sbjct: 255 FLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALI 314
Query: 147 K 147
+
Sbjct: 315 Q 315
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +A+++I + +NG H ++ ++ +++A + N GL PD
Sbjct: 474 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 533
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+ +MDG+C VG+ + + + + + G+ PNVV + +
Sbjct: 534 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV------------------VYCTL 575
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ C +G+ID+ L L M + G PS LY +I L Q
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQ 616
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 35/159 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C EAR V D M G +P+V +Y I+ + +++++ DG+
Sbjct: 335 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG---DGIA 391
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD YT+ ++ + G ++ M + NE + GV P+VVT +
Sbjct: 392 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT------------------YR 433
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI ALC +GK+D A+ M + G P + Y+ LI+
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQ 472
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + + D M +G P+ T+ +L +A + +++ G+KPD
Sbjct: 369 YATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 428
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY V+ C++G+ ++ ME N+ I++GV P+ LI +
Sbjct: 429 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 488
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G + F+++I LC +G++ A + L G P +Y L+
Sbjct: 489 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLM 541
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M + PN TY L EA + ++ + PDV
Sbjct: 265 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 324
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T + +M CK G+ E ++ + +G P+V + L+ + ++ D+
Sbjct: 325 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDL 384
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I+A G +DKA+++ M +HG P Y T+I L
Sbjct: 385 MLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 31/138 (22%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGL--KPDVYTYTAVMDGFCKVGRSN 68
G P+V +Y+IL +A ++L + G P+V Y V+DGF K G N
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 236
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ +L E ++RG+ P++V T+N+V+ ALC +DKA L
Sbjct: 237 KACDLFKEMVQRGIPPDLV------------------TYNSVVHALCKARAMDKAEAFLR 278
Query: 129 LMYEHGKIPSRTLYDTLI 146
M +P+ Y+ LI
Sbjct: 279 QMVNKRVLPNNWTYNNLI 296
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 19/103 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL+ ++ +++GFC+ R++E +++L LH ++G +P
Sbjct: 141 GLRVNIIIANHLLEGFCEAKRTDEALDIL-----------------LHRTPELGCVPDVF 183
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLI 146
+++ ++++LC GK +A LL +M E G + P+ Y+T+I
Sbjct: 184 SYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 226
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +V D M G PNV Y L E + + G+KP
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPS 603
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
Y+ ++DG + GR+ +E E G+ ++ T
Sbjct: 604 TILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICT 641
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 29/157 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + A +++D M G NV Y I +A +++ ++ G+ PD
Sbjct: 479 CKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDA 538
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT V+D +C++G ++ +LL E ++RG+ P VV TFN ++
Sbjct: 539 ITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVV------------------TFNVLM 580
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
C +G ++ LL M E G +P Y+TL+K+
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQ 617
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K D M P+ TYT ++E + + + GLKPD TYT ++D
Sbjct: 382 ANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLID 441
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI-----------GHIP 102
+CK G L NE ++ G+TPN+VT L H +D G
Sbjct: 442 VYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQL 501
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N+++ +C G I++A+ L+ M G P Y T+I
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 29/136 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G N T+Y I+ EA+ +LM + PDV +Y+ V+DG+C +G +
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKA 312
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
++L+++ +G+ PN T+N++I LC +GK +A +L M
Sbjct: 313 LKLMDDMQIKGLKPN------------------RYTYNSIILLLCKIGKSFEAEKVLREM 354
Query: 131 YEHGKIPSRTLYDTLI 146
IP +Y TLI
Sbjct: 355 MSQKIIPDNVVYTTLI 370
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 41/165 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC D +A K++ M D G P V T+ +L M+GF
Sbjct: 548 YCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVL------------------------MNGF 583
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------NVIDIGHIPRT 104
C +G + LL +E+G+ P+ + TL+ H + + G P +
Sbjct: 584 CMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDS 643
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I+ C + +A L M E G +P+ T Y+ LIK+
Sbjct: 644 NTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRF 688
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ + +A K++D M G PN TY + EA ++L + + + PD
Sbjct: 303 YCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPD 362
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
YT ++ GF K+G + +E + + ++P+ +T L H
Sbjct: 363 NVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFH 422
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+ +I C G++ A L M + G P+ Y LI L
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGL 478
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C DF EA D M G PN+ TY L +A ++L +++ G++P
Sbjct: 378 CKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTA 437
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YTY +D F K G + + +E + +G+ PN+V L+++ ++G +
Sbjct: 438 YTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNG 497
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++T+N +++ VG++D+A+ LL M +G P + ++LI L
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G PNV T+TI EAYE+ + ++G PD+ TYT ++D C G+
Sbjct: 253 MEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQ 312
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL----HNVIDI-------------GHIPRTITFNN 109
EL + G P+ V I L ++ D+ G++P +TF
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC D+A +M + G +P+ Y+TLI
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA E+ + ++GLKP + TY+A+M K S VM LL E + G+ PNV T
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269
Query: 94 NVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
V+ D G P +T+ +I ALC G+++ A L M +G
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHK 329
Query: 137 PSRTLYDTLIKKLD 150
P + +Y TL+ K +
Sbjct: 330 PDQVIYITLLDKFN 343
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M D G P++ TYT+L A E+ + +K +G KPD Y ++
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------DI----GHI 101
D F G + E ++ G P+VVT L +V+ D+ G +
Sbjct: 340 DKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL 399
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+N +I L G+I+ AL LL M G P+ Y T I
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFI 444
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + M D G PN + IL A ++ + N+G++PD+ +YT ++
Sbjct: 911 EAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILV 970
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D C GR +E + NE G+ P+ I +N +I L
Sbjct: 971 DCLCLAGRVDEALYYFNELKSTGLDPDF------------------IAYNRIINGLGKSQ 1012
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++AL L M G +P Y++L+ L
Sbjct: 1013 RMEEALALYNEMRNRGIVPDLYTYNSLMLNL 1043
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA M ++ +GL PD TY +M + KVG+ +E + LL+E I G P+V+ + L
Sbjct: 490 EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLI 549
Query: 94 NVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + D+ P +T+N ++ L G++ KA+ L M
Sbjct: 550 DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCS 609
Query: 137 PSRTLYDTLI 146
P+ ++TL+
Sbjct: 610 PNTISFNTLL 619
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P + +Y L +A+++ ++KN G PD +T+ ++ K G+ E+
Sbjct: 783 GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITEL 842
Query: 71 MELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQA 113
EL E I R P+ +T L ++++ P T+ +I
Sbjct: 843 FELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDG 902
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L VG++++A+ L M ++G P+ +++ LI
Sbjct: 903 LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI 935
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY EA ++ M NG P+V L EA++M +K+ L P
Sbjct: 516 CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K GR + +EL I + +PN TI+FN
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPN------------------TISFNT 617
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ C +++ AL + M P Y+T+I L ++
Sbjct: 618 LLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKE 660
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 36/180 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A + + M +P+V T+ IL EA L + G+KPD
Sbjct: 255 FCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPD 314
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
+ TY ++MDG+C V N +LN RGVT V + +N++ G
Sbjct: 315 IVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRS----YNIVINGFCKIKMVDQAM 370
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT+N++I LC G+I AL L+ LM++ G+ P Y +++ L
Sbjct: 371 KLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDAL 430
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ID M D G P++ TY+ + +A +L+ +K+ G++P++
Sbjct: 396 CKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNM 455
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++DG CK GR + + + + +G V T+ +I
Sbjct: 456 YTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVN------------------TYTVMI 497
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
Q C G D+AL LL M ++ IP Y+ +I L
Sbjct: 498 QGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSL 535
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N+ A+ +++ M G V +Y I+ +A ++ + + + P+
Sbjct: 325 YCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPN 384
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY +++DG CK GR + +EL++ +RG P++ IT++++
Sbjct: 385 VITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDI------------------ITYSSI 426
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ALC +DKA+ LL + + G P+ Y LI L
Sbjct: 427 LDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGL 465
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A D + G+H + +Y L A E+L V ++ D
Sbjct: 150 FCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLD 209
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
V Y+ ++D CK N+ +L +E + R ++ N+VT I L N
Sbjct: 210 VVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFN 269
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I P TFN ++ A C G++ +A L +M + G P Y++L+
Sbjct: 270 KMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLM 322
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +AR + + + GY+ V TYT++ EA +L +K++ PD
Sbjct: 466 CKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDA 525
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TY ++ +++ +LL E I RG+
Sbjct: 526 ITYEIIICSLFDKDENDKAEKLLREMITRGL 556
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G+KP+ + +++ FC++G +L + ++ G P+ +TL
Sbjct: 100 GIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQA 159
Query: 90 IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ H+ ++ +G +++ +I LC VG+ AL LL
Sbjct: 160 LNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELL 198
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 28/163 (17%)
Query: 12 RKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDG 60
RK + M G P+V TY ++ Y + + ++ GL PDV TY +++DG
Sbjct: 274 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 333
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPR 103
+ KVG EV L NE + G P+++T L N + + G P
Sbjct: 334 YGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPN 393
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T++ +I A C G + A+ L M G +P+ Y +LI
Sbjct: 394 VVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLI 436
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKP 49
CYC A + M +NG PNV TY T+++A+ ++ ++++ GL P
Sbjct: 368 CYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLP 427
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ +TYT+++D CK G E +LLN+ ++ GV N+V T+
Sbjct: 428 NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIV------------------TYTA 469
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC G++ +A + M + G P++ +Y L+
Sbjct: 470 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALV 506
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A K+ M G PN TYT L EA+++L ++ G+K +
Sbjct: 404 FCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLN 463
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LH 93
+ TYTA++DG CK GR E E+ ++ G++PN L+H L
Sbjct: 464 IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILK 523
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + P I + ++I C K+++ L+L M G + + T+I
Sbjct: 524 QMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTII 576
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +V M +G PN YT L +A ++L + +KPD+
Sbjct: 475 CKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDL 534
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHN 94
Y +++ G C + E +L E RG++ N V L
Sbjct: 535 ILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQE 594
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ D+G +T+ +I LC G ++ A+ M G P+ +Y +LI L
Sbjct: 595 MQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL 649
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N A+K+ D M G P++T +T L EA ++ + ++ D+
Sbjct: 650 CKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDL 709
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+ YT+++ GF + G ++ + NE IE+G+ P V I L
Sbjct: 710 HVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICL 750
Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 8 FFEARKVIDY------MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+F+A K D M D G + TY +L A + + + GL+P+
Sbjct: 579 YFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPN 638
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
V YT+++DG CK +L +E RG+TP++ L
Sbjct: 639 VAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTAL 680
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +++ M + +P+V T++ L EA E+ ++ G+ P
Sbjct: 121 FCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPT 180
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-- 98
TY +++DGFCK R N+ +L+ + +P+VVT L N ++I
Sbjct: 181 TITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFC 240
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + T+T+ +I C VG +D A LL +M G P+ + +++ L
Sbjct: 241 EMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 25/150 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID + +G+H + A + + + G+ PDV TY+ ++D FC+ GR + +L
Sbjct: 82 IIDRLCKDGHH--------IHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQL 133
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L + IER + P+VVT L N ++ G P TIT+N++I C
Sbjct: 134 LRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCK 193
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ A +L M P + TLI
Sbjct: 194 QDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 28/146 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M G P TY + +A ML ++ + PDV T++ ++
Sbjct: 164 EAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
+G+CK R + ME+ E RG+ N VT LIH L+ +I G
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVA 283
Query: 102 PRTITFNNVIQALCGVGKIDKALLLL 127
P ITF +++ +LC ++ KA +L
Sbjct: 284 PNYITFQSMLASLCSKKELRKAFAIL 309
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 24/174 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYT 55
C + +A ++D M + G+ P T L A +L ++ +K V Y
Sbjct: 21 CCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYN 80
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDI 98
A++D CK G L E ++G+ P+V+T L ++I+
Sbjct: 81 AIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIER 140
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +TF+ +I AL GK+ +A + M G P+ Y+++I +Q
Sbjct: 141 QINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQ 194
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 22/104 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +PDV T+T +M+G C GR + + L++ +E G P
Sbjct: 5 GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP--------------------- 43
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I LC +G + AL LL M E +Y+ +I +L
Sbjct: 44 -YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRL 86
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+++ M NG P+ TYT L EA ++ N+ +DGL P
Sbjct: 1411 CKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSA 1470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
T+T ++ +C+ G + +E GV PN +T LIH H
Sbjct: 1471 VTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHE 1530
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+++ G + T+ +I C VG + A+ F M+++G P + L+K D
Sbjct: 1531 MLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGFD 1586
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 28/167 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+ D M G P+ Y I A+E+ + +G+ D TY ++
Sbjct: 1349 AREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIH 1408
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------NVIDIGHIP 102
G CK G + EL + + G+ P+ +T LIH H N+I G +P
Sbjct: 1409 GLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLP 1468
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+TF +I A C G + A M E G P+ Y+ LI L
Sbjct: 1469 SAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 1515
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 31/166 (18%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
FE R+V+ M + G + TY IL +A E+ M + ++GL+PD TYT +
Sbjct: 1385 FELREVL--MLE-GISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCL 1441
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------NVIDIGH 100
+ C+ G E ++ N I G+ P+ VT +IH + +++ G
Sbjct: 1442 IHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGV 1501
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+N +I ALC +G+ A M E G + ++ Y LI
Sbjct: 1502 EPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLI 1547
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDG 46
YC + + + A M + G PN TY +L +EML G
Sbjct: 1480 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEML----ERG 1535
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
L + YTYT ++DG CKVG + M E + G+ P+ +T L D GH+ TI
Sbjct: 1536 LVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGFD-GHVHHTIE 1594
Query: 107 F-NNVI 111
+ +NVI
Sbjct: 1595 YLDNVI 1600
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 23 YHPNVTTY----TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78
Y+P +T + + Y++ + ++N+G+ P V TY A++ G + G E
Sbjct: 1193 YNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMR 1252
Query: 79 ERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
G+ P+V+T L+ ++ G P +T+N +I C +G ++
Sbjct: 1253 AMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLE 1312
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIK 147
+A +L M E G +P+ Y L+K
Sbjct: 1313 EARILKEEMGEQGCLPNVCTYTILMK 1338
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 28/156 (17%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V TY L EA + +++ GL P V TY ++DG+C++G E
Sbjct: 1255 GLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEA 1314
Query: 71 MELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQA 113
L E E+G PNV T L ++ G P +N I A
Sbjct: 1315 RILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICA 1374
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G I +A L ++ G Y+ LI L
Sbjct: 1375 ELILGDIARAFELREVLMLEGISSDTVTYNILIHGL 1410
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA + + G P V TY IL EA + + G P+
Sbjct: 1270 YCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPN 1329
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP----------------NVVTLIHLHN 94
V TYT +M G V E +E + +G+ P ++ L
Sbjct: 1330 VCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELRE 1389
Query: 95 VIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+ + I T+T+N +I LC G + A L M +G P Y LI
Sbjct: 1390 VLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLI 1442
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 26/128 (20%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER--GVTPNVVTLIHLHNVIDIGHIPR 103
G++P + TY ++D F K GR ++V LL E R G PN VT +NV+ G +
Sbjct: 1114 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVT----YNVVITGLTRK 1169
Query: 104 --------------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
+ T+N +I L G + K L M G +P+ Y+
Sbjct: 1170 GDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYN 1229
Query: 144 TLIKKLDQ 151
+I L Q
Sbjct: 1230 AMIHGLLQ 1237
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ +MFD G P+ TY I+ EA +L + GL+PDV
Sbjct: 246 CKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDV 305
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------------TLIHLHNVIDI 98
TY+ ++ +CK+GR E + + + +G PN LI + +++D+
Sbjct: 306 VTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDL 365
Query: 99 ---GHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IP FN +I A G +DKA+ M ++G P Y T+I
Sbjct: 366 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVI 417
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 32/148 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG---LKPDVYTYTAVMD 59
V M + GY P+V +Y L EA E+L+++ DG P+V +Y V+D
Sbjct: 149 VFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVID 208
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GF K G ++ L +E + +G+ P+VVT +N++I LC
Sbjct: 209 GFFKEGEVDKAYFLFHEMMGQGLPPDVVT------------------YNSLIDGLCKAQA 250
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+DKA+ +L M++ G +P Y+ +I+
Sbjct: 251 MDKAVAILQHMFDKGVMPDTRTYNIMIR 278
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + R ++D M +G + IL +A ++ +GL+PD
Sbjct: 350 YATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPD 409
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V +Y+ V+ CK GR + + N+ + G++PN+ I+F ++
Sbjct: 410 VVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNI------------------ISFTSL 451
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC +G+ K L F M G P +T++ L
Sbjct: 452 IHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNL 490
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 31/175 (17%)
Query: 3 CNKNDFFEARKVIDYM-FDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C + EA +++ +M D GY+ PNV +Y + +AY + + GL
Sbjct: 173 CVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLP 232
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
PDV TY +++DG CK ++ + +L ++GV P+ T I + +G +
Sbjct: 233 PDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRL 292
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +IQ C +G+ +A + M G+ P+ T+Y L+
Sbjct: 293 LKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 347
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+ D + G P+V +Y L E+ + L + + GL+PD
Sbjct: 491 CKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDS 550
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIP-------- 102
+TY ++++G+ K GR + + L E + V +T I LH + G I
Sbjct: 551 WTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMK 610
Query: 103 --------RTITFNNVIQALCGVGKIDKALLLL 127
R T+N V+ LC +D+AL +
Sbjct: 611 MVDRGTQLRIETYNTVLGGLCENSCVDEALRMF 643
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA +++ M +G P+V TY++L EA + ++ G KP+
Sbjct: 280 YCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPN 339
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-----TPNVVTLIHL-HNVIDI------ 98
Y ++ G+ G +V +LL+ I G+ N++ + H +D
Sbjct: 340 STIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFT 399
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P ++++ VI LC G+++ A+ M G P+ + +LI L
Sbjct: 400 EMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGL 455
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 29/141 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNV-----------TTYTILEAYEMLMNVKNDGLKPDV 51
C+ ++ + ++ M + G HP+ ++EA + V + G+KPDV
Sbjct: 456 CSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDV 515
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y ++DG+C VG+ +E ++ L ++ IG P + T+N+++
Sbjct: 516 VSYNTLIDGYCFVGKMDE------------------SIKQLDRMVSIGLRPDSWTYNSLL 557
Query: 112 QALCGVGKIDKALLLLFLMYE 132
G+++ AL L M+
Sbjct: 558 NGYFKNGRVEDALALYREMFR 578
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR++ M D G + TY T+L EA M ++++ + DV T++ V++
Sbjct: 604 ARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVIN 663
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
KVGR +E L + + RG P+V+T
Sbjct: 664 ALLKVGRIDEAKSLFSAMVLRGPVPDVIT 692
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ N A V+ + GY P+ T+T L EA ++ + +G +PD
Sbjct: 99 FCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPD 158
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
V TY +++G CKVG ++ + L +R P VV L
Sbjct: 159 VLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFS 218
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ G P T++++I LC +G +A+ L + M +P + ++TL+ L ++
Sbjct: 219 DMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKE 277
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 21/122 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNVIDI----- 98
LKPDV TY ++MDG C + + + + + +G P+V+ TLI+ + I I
Sbjct: 295 LKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAM 354
Query: 99 ---------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTL 145
G IP T+T+N +I LC VG++ A+ L M +G+IP R L+D L
Sbjct: 355 GLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYL 414
Query: 146 IK 147
K
Sbjct: 415 CK 416
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G PN TY+ L EA + + + + PD
Sbjct: 205 CKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQ 264
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----------NVIDI 98
T+ ++D CK G + +++ I+ + P+VVT L+ H NV D
Sbjct: 265 LTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDT 324
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P I++ +I C + +DKA+ L M + G IP Y+TLI L
Sbjct: 325 MVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGL 379
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +++ + V D M G P+V +YT L +A + + GL PD
Sbjct: 309 HCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPD 368
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHIPR 103
TY ++ G C VGR + + L +E + G P++VT L H + + + +
Sbjct: 369 TVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLK 428
Query: 104 TITFNN----------VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I N V+ +C G+++ A L + G P Y +I L QQ
Sbjct: 429 VIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQ 487
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M G P++ TY IL EA +L ++ L PD+
Sbjct: 380 CHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDI 439
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ Y+ VMDG C+ G +L ++ +G+ P+V RT T +I
Sbjct: 440 HIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDV----------------RTYTI--MI 481
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G + +A L M E+G P+ Y+ + +
Sbjct: 482 NGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITR 517
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + AR + + G HP+V TYTI+ EA ++ + +G P+
Sbjct: 450 CRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNA 509
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + GF + + ++L E + RG + +V T
Sbjct: 510 CTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVST 546
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
T+L Y+ + + G+ + YT +++ FC + R +L +
Sbjct: 72 TVLSLYKQM---DSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGD-------------- 114
Query: 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G+ P T TF +I+ LC GKI +AL L M G P Y TLI L
Sbjct: 115 ----ILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGL 169
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 34/183 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE---AYEMLMNVKND--------GLKPDV 51
C +++ +++ M D+ PNV +T L E ++ + +D G++PDV
Sbjct: 260 CKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDV 319
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDIGH----- 100
TYTA+MDG C +E ++ + + +G PNV++ L N ID
Sbjct: 320 VTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEE 379
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTLIKK-- 148
+P +T+N +I LC VG++ A+ L M G+IP R L D L K
Sbjct: 380 MCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRH 439
Query: 149 LDQ 151
LDQ
Sbjct: 440 LDQ 442
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 30/177 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ N+ DF V+ +F G+ P+ T+T L EA + + +G +P
Sbjct: 120 CHLNRVDF--GFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQP 177
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+ TY ++ G CKVG S + LL +++ PNV+T L
Sbjct: 178 NGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIF 237
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P T+N++I LC + L+ M + +P+ ++ TL+ L
Sbjct: 238 SEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 63/213 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A V+D M G P+V TYT L EA ++ + G P+V
Sbjct: 295 CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNV 354
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+Y+ +++G+CK+ R ++ M L E +R + PN+VT LIH H
Sbjct: 355 ISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHE 414
Query: 95 VIDIGHIPRTITF-----------------------------------NNVIQALCGVGK 119
++ G IP +T+ N VI +C VG+
Sbjct: 415 MVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGE 474
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ A L + G P Y +I L Q
Sbjct: 475 LEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQ 507
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A + M +G P++ TY IL +A ML ++ L PD+
Sbjct: 400 CHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDI 459
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y V+DG C+VG +L + +G+ P+V T+ +I
Sbjct: 460 QSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDV------------------WTYTIMI 501
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G + +A L M G P Y+ + +
Sbjct: 502 NGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITR 537
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ DVYT V++ FC + R ++ G + L + +GH P T
Sbjct: 104 GIPSDVYTLAIVINSFCHLNR-----------VDFGFSV-------LAKIFKLGHQPDTA 145
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +I+ LC GKI +AL L M G P+ Y TLI L
Sbjct: 146 TFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGL 189
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A + + G HP+V TYTI+ EA ++ + DG PD
Sbjct: 470 CRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDD 529
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY + GF + + ++LL E + RG + + T+
Sbjct: 530 CTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTI 567
>gi|357112338|ref|XP_003557966.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 538
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLK-- 48
C C + A +V+D M G P + TY L E L+N D K
Sbjct: 202 CLCKRGRVTRAMEVLDAMRGVGCEPTIRTYNSLIGGLCYVGRLEDARDLLNKLKDSPKQT 261
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI------ 101
D+YT+T V+DGFCKVGR+++ M + +A+ G++P + T L N GH+
Sbjct: 262 ADIYTFTIVLDGFCKVGRTDDAMAIFEDAVRTGLSPTIFTYNALLNGHCKEGHLLKAYNL 321
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
P I+F+ V+ AL G+I A M G DTL + L
Sbjct: 322 LMEMCDNETCPPDKISFSIVLPALLRAGEISAAWQTFKRMEHAGLEADGRALDTLTRGLC 381
Query: 151 QQ 152
+Q
Sbjct: 382 RQ 383
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
N + PD +++ + FC+ G +E E L+E + R G++P
Sbjct: 151 NGTVAPDAHSFAIAVQCFCRKGAPDEAKETLDEMLAR------------------GYLPT 192
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
F+ V+ LC G++ +A+ +L M G P+ Y++LI L
Sbjct: 193 VSAFSAVVGCLCKRGRVTRAMEVLDAMRGVGCEPTIRTYNSLIGGL 238
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 18/119 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+ + + G +P YTY + + G + + +L++ +G
Sbjct: 393 DAKEVFGKLVSSGHEPVSYTYCLMAQALARGGEVDAAVAILDDMARKG------------ 440
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ R + +V++ALC + +A+ +L ++ +P R +D L+ +L +Q
Sbjct: 441 ------YALRKRAYTDVVRALCDRSRTSEAVRVLAVVIARDFVPGRNAFDALLGELSRQ 493
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 28/156 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV T+ ++ +A ++ ++ +PDVYTY +MDG CK R +E + L
Sbjct: 197 PNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSL 256
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
L+E G P+ VT LI+ + N+ G IP +T+N +I LC
Sbjct: 257 LDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCL 316
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
GK++KA+ LL M +P+ Y T+I L +Q
Sbjct: 317 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQ 352
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 30 YTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT- 88
+ LE Y ++ K + P+V T+ V+ CKVG ++ +++ + R P+V T
Sbjct: 178 HRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTY 237
Query: 89 ---------------LIHLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+ L + + I G P +TFN +I LC G + +A L+ M+
Sbjct: 238 CTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFL 297
Query: 133 HGKIPSRTLYDTLIKKL 149
G IP+ Y+TLI L
Sbjct: 298 KGCIPNEVTYNTLIHGL 314
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 28/165 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V+ M + GY N Y+ L EA + + G + + Y+AV+DG C
Sbjct: 361 VLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLC 420
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDIGH-------IPRTI 105
+ G+ ++ +E+L+E +G TPN T L H +++ +
Sbjct: 421 RDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEV 480
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
++ +I LC GK+ +A+++ M G P Y ++I L
Sbjct: 481 CYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLS 525
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D A K++D MF G PN TY L +A +L + + P+V
Sbjct: 280 CKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNV 339
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLI-------------HLHNV 95
TY +++G K GR+ + +L ERG N TLI HL
Sbjct: 340 VTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKE 399
Query: 96 IDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ + G+ TI ++ VI LC GK D A+ +L M G P+ +L+K
Sbjct: 400 MTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMK 452
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 28/154 (18%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
P+V TY L EA +L ++ DG P T+ +++G CK G + +
Sbjct: 231 EPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAK 290
Query: 73 LLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALC 115
L++ +G PN VT LIH L ++ +P +T+ +I L
Sbjct: 291 LVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLV 350
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ +L LM E G + +Y TLI L
Sbjct: 351 KQGRALDGACVLALMEERGYCVNEYVYSTLISGL 384
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 30/158 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +V+ M + G PN T + L A E+ ++ + Y+ ++
Sbjct: 427 DAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLI 486
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI----------------- 101
G CK G+ E M + + + +G P+VV + N + I +
Sbjct: 487 HGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPD 546
Query: 102 --PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
P +T+N ++ LC I +A+ LL M + G P
Sbjct: 547 SQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDP 584
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-------ILEAYEMLMNVKNDGL------KP 49
C EA V M G P+V Y+ I E M + N+ L +P
Sbjct: 490 CKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQP 549
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
DV TY +++ CK + ++LLN ++RG P++VT
Sbjct: 550 DVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVT 588
>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
Length = 491
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG---- 46
+C D A V+ M ++G P TTY I+ A++ + +K G
Sbjct: 209 WCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDE 268
Query: 47 -LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHL----HNVIDI 98
KPDV +YT ++ G G+ + ++ +E + G P+V T LI + NV D
Sbjct: 269 SCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDA 328
Query: 99 ----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G++P +T+ +I+ LC GKID+ L LL M G P Y+ LI+
Sbjct: 329 VTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRY 388
Query: 149 LDQQ 152
L ++
Sbjct: 389 LFEE 392
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A V D M GY PNV TYT+L ++L +KN G +P V
Sbjct: 320 CKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIV 379
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPN--------------------VVTL 89
TY ++ + G + ++L E + +G PN V+
Sbjct: 380 QTYNVLIRYLFEEGEMEKGLDLF-EKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAA 438
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ ++D G++PR FN V+ L G + + LL + ++ ++
Sbjct: 439 RMVEEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKLLRMQEKYRRL 485
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
PDV TY + DG+C+V ++ +++L +E G+ P T I L G +
Sbjct: 197 PDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDF 256
Query: 102 ---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +++ ++ L G+++KA + M + G PS Y+ LI
Sbjct: 257 FLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALI 316
Query: 147 K 147
+
Sbjct: 317 Q 317
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +A+++I + +NG H ++ ++ +++A + N GL PD
Sbjct: 487 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 546
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+ +MDG+C VG+ + + + + + G+ PNVV + +
Sbjct: 547 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV------------------VYCTL 588
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ C +G+ID+ L L M + G PS LY +I L Q
Sbjct: 589 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQ 629
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 35/159 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C EAR V D M G +P+V +Y I+ + +++++ DG+
Sbjct: 348 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG---DGIA 404
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD YT+ ++ + G ++ M + NE + GV P+VVT +
Sbjct: 405 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT------------------YR 446
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI ALC +GK+D A+ M + G P + Y+ LI+
Sbjct: 447 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQ 485
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + + D M +G P+ T+ +L +A + +++ G+KPD
Sbjct: 382 YATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 441
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY V+ C++G+ ++ ME N+ I++GV P+ LI +
Sbjct: 442 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 501
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G + F+++I LC +G++ A + L G P +Y L+
Sbjct: 502 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLM 554
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M + PN TY L EA + ++ + PDV
Sbjct: 278 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 337
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T + +M CK G+ E ++ + +G P+V + L+ + ++ D+
Sbjct: 338 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDL 397
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I+A G +DKA+++ M +HG P Y T+I L
Sbjct: 398 MLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 452
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 31/138 (22%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGL--KPDVYTYTAVMDGFCKVGRSN 68
G P+V +Y+IL +A ++L + G P+V Y V+DGF K G N
Sbjct: 190 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 249
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ +L E ++RG+ P++V T+N+V+ ALC +DKA L
Sbjct: 250 KACDLFKEMVQRGIPPDLV------------------TYNSVVHALCKARAMDKAEAFLR 291
Query: 129 LMYEHGKIPSRTLYDTLI 146
M +P+ Y+ LI
Sbjct: 292 QMVNKRVLPNNWTYNNLI 309
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 19/103 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL+ ++ +++GFC+ R++E +++L LH ++G +P
Sbjct: 154 GLRVNIIIANHLLEGFCEAKRTDEALDIL-----------------LHRTPELGCVPDVF 196
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLI 146
+++ ++++LC GK +A LL +M E G + P+ Y+T+I
Sbjct: 197 SYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 239
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +V D M G PNV Y L E + + G+KP
Sbjct: 557 YCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPS 616
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
Y+ ++DG + GR+ +E E G+ ++ T
Sbjct: 617 TILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICT 654
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG---- 46
+C D A V+ M ++G P TTY I+ A++ + +K G
Sbjct: 209 WCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDE 268
Query: 47 -LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHL----HNVIDI 98
KPDV +YT ++ G G+ + ++ +E + G P+V T LI + NV D
Sbjct: 269 SCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDA 328
Query: 99 ----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G++P +T+ +I+ LC GKID+ L LL M G P Y+ LI+
Sbjct: 329 VTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRY 388
Query: 149 LDQQ 152
L ++
Sbjct: 389 LFEE 392
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 34/158 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A V D M GY PNV TYT+L ++L +KN G +P V
Sbjct: 320 CKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIV 379
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPN--------------------VVTL 89
TY ++ + G + ++L E + +G PN V+
Sbjct: 380 QTYNVLIRYLFEEGEMEKGLDLF-EKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAA 438
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ ++D G++PR FN V+ L G + + LL
Sbjct: 439 RMVDEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKLL 476
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------ 101
PDV TY + DG+C+V ++ +++L +E G+ P T I L G +
Sbjct: 197 PDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDF 256
Query: 102 ---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +++ ++ L G+++KA + M + G PS Y+ LI
Sbjct: 257 FLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALI 316
Query: 147 K 147
+
Sbjct: 317 Q 317
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++ M + GYH N Y++L EA + + G KP++ Y+ ++
Sbjct: 345 DAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLV 404
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
DG C+ G+ NE E+LN I G PN T L + G
Sbjct: 405 DGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCS 464
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +I LCGVG++ +A+++ M G P Y ++IK L
Sbjct: 465 RNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGL 512
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNV 95
PD YTY +MDG CK R +E + LL+E G +P+ V L + +
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKL 279
Query: 96 ID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+D G +P +T+N +I LC GK+DKA+ LL M IP+ Y TLI L +
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339
Query: 152 Q 152
Q
Sbjct: 340 Q 340
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+++++ M +G PN TY+ L EA ++ + G +
Sbjct: 408 CREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNK 467
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
+ Y+ ++DG C VGR E M + ++ + G+ P+ V + + IG +
Sbjct: 468 FCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHE 527
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N ++ LC I +A+ LL M + G P +T + L +
Sbjct: 528 MLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSE 587
Query: 152 Q 152
+
Sbjct: 588 K 588
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 36/177 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D K++D MF G PN TY L +A +L + + P+
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G K R+ + + LL+ ERG N H+++V+
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ----HIYSVLISGLFKEGKAEEAMS 383
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P + ++ ++ LC GK ++A +L M G +P+ Y +L+K
Sbjct: 384 LWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMK 440
>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
Length = 556
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C K EA+ + + M G P++ T+ +LEA ++ V G+ PD
Sbjct: 304 FCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPD 363
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V++YT ++ G+CK R +E + L NE + + ++V L
Sbjct: 364 VWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFS 423
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P IT+N +I A C + ID + L LM G P+ Y+ LI
Sbjct: 424 TINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILI 476
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +++ M PN+ Y ++ +A ++ + + + G+ PD+
Sbjct: 200 CKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDI 259
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT+++ GFC+ G+ EV +L+ E + + + PNV TFN +I
Sbjct: 260 LTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVY------------------TFNVLI 301
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
A C GK+ +A + LM + G+ P ++TLI
Sbjct: 302 DAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLIS 337
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
+C + EARK+ D +F+ G P+V +YTIL
Sbjct: 339 HCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLD 398
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
A+E+ + NDG P+V TY ++D FCK+ + +EL
Sbjct: 399 IVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFK 458
Query: 76 EAIERGVTPNVVT----------------LIHLHNVIDIGHI-PRTITFNNVIQALCGVG 118
+G+TP V+T ++L +V+ ++ P +IT+N++ LC G
Sbjct: 459 LMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSG 518
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I A L +M+ G Y+ L+
Sbjct: 519 RISDAWELFKVMHVGGPPVDVATYNVLL 546
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +AR + + D G P++ TYT L E +++ + N + P+
Sbjct: 234 FCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPN 293
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH-------------- 93
VYT+ ++D FC+ G+ E + N ++RG P++VT LI H
Sbjct: 294 VYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFD 353
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V + G +P ++ +I C +ID+A+ L M + LY +LI L
Sbjct: 354 TVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGL 409
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
CYC+ + A V+ + GY PN T T + +A + NV G+
Sbjct: 128 CYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLL 187
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
D Y +++G CK+GRS + +LL E + V PN+V + +
Sbjct: 188 DEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLY 247
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+G P +T+ ++I+ C G+ + L+ M P+ ++ LI
Sbjct: 248 LKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLI 301
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------IHLHN------- 94
P V + ++ K+ + LL + + +GVTP++ TL HL
Sbjct: 82 PSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSV 141
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+ G+ P IT V++ LC G++ KA+ + G + Y TLI L
Sbjct: 142 LGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGL 199
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----- 89
A +L + G+ P ++T + ++ +C +G +L ++RG PN +TL
Sbjct: 103 AISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMK 162
Query: 90 -----------IHLH-NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ H NV G + + + +I LC +G+ A LL M P
Sbjct: 163 GLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKP 222
Query: 138 SRTLYDTLI 146
+ +Y+ +I
Sbjct: 223 NIVIYNMII 231
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C DF EA D M G PN+ TY L +A ++L +++ G++P
Sbjct: 378 CKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTA 437
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YTY +D F K G + + +E + +G+ PN+V L+++ ++G +
Sbjct: 438 YTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNG 497
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++T+N +++ VG++D+A+ LL M +G P + ++LI L
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G PNV T+TI EAYE+ + ++G PD+ TYT ++D C G+
Sbjct: 253 MEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQ 312
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL----HNVIDI-------------GHIPRTITFNN 109
EL + G P+ V I L ++ D+ G++P +TF
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC D+A +M + G +P+ Y+TLI
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA E+ + ++GLKP + TY+A+M K S VM LL E + G+ PNV T
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269
Query: 94 NVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
V+ D G P +T+ +I ALC G+++ A L M +G
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHK 329
Query: 137 PSRTLYDTLIKKLD 150
P + +Y TL+ K +
Sbjct: 330 PDQVIYITLLDKFN 343
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA M ++ +GL PD TY +M + KVG+ +E + LL+E I G P+V+ + L
Sbjct: 490 EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLI 549
Query: 94 NVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + D+ P +T+N ++ L G++ KA+ L M E
Sbjct: 550 DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCS 609
Query: 137 PSRTLYDTLI 146
P+ ++TL+
Sbjct: 610 PNTISFNTLL 619
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M D G P++ TYT+L A E+ + +K +G KPD Y ++
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------DI----GHI 101
D F G + E ++ G P+VVT L +V+ D+ G +
Sbjct: 340 DKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL 399
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+N +I L G+I+ AL LL M G P+ Y+ I
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFI 444
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + M D G PN + IL A ++ + N+G++PD+ +YT ++
Sbjct: 911 EAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILV 970
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D C GR +E + NE G+ P+ I +N +I L
Sbjct: 971 DCLCLAGRVDEALYYFNELKSTGLDPDF------------------IAYNRIINGLGKSQ 1012
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++AL L M G +P Y++L+ L
Sbjct: 1013 RMEEALALYNEMRNRGIVPDLYTYNSLMLNL 1043
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY EA ++ M NG P+V L EA++M +K+ L P
Sbjct: 516 CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K GR + +EL IE+ +PN TI+FN
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPN------------------TISFNT 617
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ C +++ AL + M P Y+T+I L ++
Sbjct: 618 LLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKE 660
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P + +Y L +A+++ ++KN G PD +T+ ++ K G+ E+
Sbjct: 783 GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITEL 842
Query: 71 MELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQA 113
EL E I R P+ +T L ++++ P T+ +I
Sbjct: 843 FELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDG 902
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L VG++++A+ L M ++G P+ +++ LI
Sbjct: 903 LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI 935
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN + + K++ M PNV T+++L EA ++L + G+ P+
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +++DGFCK R E +++++ I +G P++ +TFN +
Sbjct: 368 TITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDI------------------MTFNIL 409
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I C +ID L L M G I + Y+TL++ Q
Sbjct: 410 INGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH 91
A+ + ++ G K D+ TY ++ GFC GR ++ +LL + I+R ++PNVVT LI
Sbjct: 282 AFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLID 341
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L ++ G P TIT+N++I C ++++A+ ++ LM G P
Sbjct: 342 SFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDP 401
Query: 138 SRTLYDTLI 146
++ LI
Sbjct: 402 DIMTFNILI 410
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+ + + G +PD + +++G C R +E +EL++ +E
Sbjct: 142 AFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE--------------- 186
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
+GH P IT N ++ LC GK+ A++L+ M E G P+ Y
Sbjct: 187 ---MGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C A + + GY P+ + L EA E++ + G KP
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIP------ 102
+ T +++G C G+ ++ + L++ +E G PN VT + NV+ G
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251
Query: 103 ----------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ +I LC G +D A L M G Y+TLI
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-------------- 47
+C +N EA +++D M G P++ T+ IL N +DGL
Sbjct: 378 FCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN 437
Query: 48 --------------------------------KPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+PD+ +Y ++DG C G + +E+
Sbjct: 438 TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFG 497
Query: 76 EAIERGVTPNV-VTLIHLHNVIDIGHIPRTI----------------TFNNVIQALCGVG 118
+ + + ++ + +I +H + + + +N +I LC
Sbjct: 498 KIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKD 557
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ KA +L M E G P Y+ LI+
Sbjct: 558 SLSKADILFRKMTEEGHAPDELTYNILIR 586
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 36 YEMLM----NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
YE+++ +++ G+ +YT + +++ FC+ + + + +
Sbjct: 104 YELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGK--------------- 148
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G+ P T+ FN ++ LC ++ +AL L+ M E G P+ +TL+ L
Sbjct: 149 ---IMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGL 203
>gi|302791469|ref|XP_002977501.1| hypothetical protein SELMODRAFT_50901 [Selaginella moellendorffii]
gi|300154871|gb|EFJ21505.1| hypothetical protein SELMODRAFT_50901 [Selaginella moellendorffii]
Length = 233
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCN +A+++++ M + P+V TYT L E +L + G +P+
Sbjct: 88 YCNAGLVDDAKRLLEEMVASDCSPDVYTYTSLVDGFCKVRRLVEVRRVLKRMAKRGCQPN 147
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYTA++D FC+ G+ +LL E + GV PNV+T L ++D
Sbjct: 148 VVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIVMMD------------- 194
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G++ L LL + + G P +Y LI+ L Q
Sbjct: 195 --RLCRTGRMSAVLELLEAIKQSGTPPHHNIYVALIRGLCQ 233
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G++P+V TY +++ GFC R + + L+ E G P+++T L
Sbjct: 1 GIEPNVVTYNSLIHGFCMANRVDSTLLLMEEMTATGCLPDIITYNTLIDGLCKAGKEMKA 60
Query: 93 ----HNVIDIGH--IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+VI +P +TF+ +++ C G +D A LL M P Y +L+
Sbjct: 61 KFCNPDVITYKQAVLPDIVTFSTLVEGYCNAGLVDDAKRLLEEMVASDCSPDVYTYTSLV 120
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N++I C ++D LLL+ M G +P Y+TLI L
Sbjct: 4 PNVVTYNSLIHGFCMANRVDSTLLLMEEMTATGCLPDIITYNTLIDGL 51
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA +++ G+ P+ TY L A E+ + G+KPD
Sbjct: 300 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI----- 98
+ Y +++ G C G ++++NE E G P++ T L + N+ D
Sbjct: 360 IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN 419
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G++P TFN +I C K+D AL L+ M+E+G P Y++++ L
Sbjct: 420 DAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 475
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 30/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +++D M P+V TY L EA L + N G PD
Sbjct: 232 CEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY ++DG+CK+ E ELL +A+ +G P+ +T+ ++I
Sbjct: 291 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD------------------QVTYCSLI 332
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G +++AL L G P +Y++L+K L
Sbjct: 333 NGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 370
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E + M G HPN TY IL EA ++++ + +GL PD
Sbjct: 476 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA 535
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLH-------N 94
++ ++ GFC+ G L + E+G + T +++H
Sbjct: 536 VSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDE 595
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ GH + T+ +I C +D+A + L M + G IPS + + +I L
Sbjct: 596 MLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 650
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 29/168 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
+AR++ D M PN+ + +LEA +L V G+ +++TY +
Sbjct: 169 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 228
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
G C+ GR E + L+ + + P+VVT + +L +++ G +
Sbjct: 229 RGLCEAGRLPEAVRLV-DGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 287
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N +I C + + +A LL G +P + Y +LI L
Sbjct: 288 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 335
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
++D + D YH +A+++ + + G+ PD++T+T + FC R + + L
Sbjct: 91 IMDALVDAAYHD--------QAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRL 142
Query: 74 LNEAIERGVTPNVVTLI------HLHNVIDI------GHI-PRTITFNNVIQALCGVGKI 120
L RG + H H+ + H+ P FN V+ ALC G +
Sbjct: 143 LRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDV 202
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A LLL + + G + Y+ I+ L
Sbjct: 203 LEAGLLLGKVIQRGMSINLFTYNIWIRGL 231
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C D A + + + GY T+ T++ A+ +N+ + G + D
Sbjct: 545 FCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRAD 604
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY ++DG CK ++R +HL +I G IP TF V
Sbjct: 605 SYTYRVLIDGSCKTAN-----------VDRA-------YMHLVEMIKKGFIPSMSTFGRV 646
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIP 137
I +L ++ +A+ ++ +M + G +P
Sbjct: 647 INSLTVNHRVFQAVGIIHIMVKIGVVP 673
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E +++ M +NG P+ + I+ EA + +K GL PD
Sbjct: 353 YATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPD 412
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V Y A++D CK+GR ++ + N+ + GV PN+ L
Sbjct: 413 VVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYF 472
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P + FN ++ LC G++ KA L+ LM G P Y TLI
Sbjct: 473 EMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLI 525
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A+++ID M G P V +YT L EA + L + + GLKPD
Sbjct: 494 CTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDE 553
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+TY ++ G+C+ GR ++ + E + G+TP VVT
Sbjct: 554 WTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT 590
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A V M D G P+ TY L E ML + GLKPD
Sbjct: 249 CKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDC 308
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------LHNVIDI 98
YTY ++++ C GR E L + I +G+ PNV LIH +H+++++
Sbjct: 309 YTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNL 368
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN + A ID+A+ + M + G P Y LI L
Sbjct: 369 MVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDAL 423
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYH---PNVTTYTIL-----------EAYEMLMNVKNDGL 47
+CN+ EA +++ M D+ PNV +Y I+ +AY + + + + G+
Sbjct: 175 FCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGI 234
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH------------- 91
+P+V TYT V+DG CK + + + I++GV P+ T LIH
Sbjct: 235 QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVR 294
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + G P T+ +++ LC G+ +A L M G P+ +Y LI
Sbjct: 295 MLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILI 350
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLN---EAIERGVTPNVVTLIHLHN-------- 94
G PDV +Y ++ GFC R+ E +ELL+ ++ R PNVV+ + N
Sbjct: 160 GCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQV 219
Query: 95 ---------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++D G P +T+ VI LC +D+A + M + G P Y+ L
Sbjct: 220 DKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279
Query: 146 I 146
I
Sbjct: 280 I 280
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNV-----------TTYTILEAYEMLMNVKNDGLKPDV 51
C + + +A++ M + G P+V T +++A ++ ++ G +P V
Sbjct: 459 CTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGV 518
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YT ++ G C VGR +E + L+ + G+ P+ T+N ++
Sbjct: 519 ISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPD------------------EWTYNTLL 560
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G+ID A + M +G P Y T++ L
Sbjct: 561 HGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGL 598
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 36/175 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K +D M G P+ TY L +AY + + +G+ P V TY+ ++
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP---------------- 102
G R +E EL I G N I ++N+I G
Sbjct: 596 HGLFTTRRFSEAKELYLNMITSGKQWN----IWIYNIILNGLSKNNCVDEAFKLFQSLCS 651
Query: 103 -----RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
TFN +I AL G+ + A+ L + +G +P Y + + L ++
Sbjct: 652 KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEE 706
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+ + + +TT+ I+ +A + + + GL PDV+TY +
Sbjct: 641 EAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIA 700
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPN 85
+ + G E +L + + G TPN
Sbjct: 701 ENLIEEGYLEEFDDLFSAMEKSGTTPN 727
>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
barbata]
Length = 429
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 150 FCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPD 209
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 210 VYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYK 269
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G + Y TLI
Sbjct: 270 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLI 322
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A +ID M G + TYT L A+E + + ++ D
Sbjct: 291 CKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDD 350
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P+ T T+ +I
Sbjct: 351 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD------------------TXTYTMII 392
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + K LL M +G PS Y+ L+
Sbjct: 393 NEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLM 427
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +V M D G P + TY L +A ++ ++ G P+
Sbjct: 301 CRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGFSPNT 360
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y+ +DG CKVG+ NE E +++ERG P+ +T+N +I
Sbjct: 361 MIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPD------------------NVTYNALI 402
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+ L G ++D+A L M E G I R+L
Sbjct: 403 RGLFGANRMDEAHRLYREMGERGYIADRSL 432
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 31/178 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
+C A ++ M GY P+ +TY +L AY++ ++++ G PD
Sbjct: 194 HCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPD 253
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH------------------- 91
TY +++ G C GR E L E +E G + I+
Sbjct: 254 ENTYASLIYGCCMAGRITEAKVLFKEVLE-GEKAQLDAGIYNVLIEGLCRASKVEEALEV 312
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G IP T+N +I ++DKAL L M E G P+ +Y T I L
Sbjct: 313 TAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGFSPNTMIYSTFIDGL 370
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNV-KNDGLK 48
C CN + A + M G+ P+ TY I EA + V + + +
Sbjct: 228 CLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQ 287
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDI---- 98
D Y +++G C+ + E +E+ +++G P + T L N +D
Sbjct: 288 LDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQL 347
Query: 99 -------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+ ++ I LC VGKI++A E G +P Y+ LI+ L
Sbjct: 348 FRAMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGL 405
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A KV D M + PNV YT L AY + + + G P
Sbjct: 160 CKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSA 219
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTIT---- 106
TY ++ C GRS ++ + RG P+ T L + G I
Sbjct: 220 STYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKE 279
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N +I+ LC K+++AL + M + G IP+ Y+ LI
Sbjct: 280 VLEGEKAQLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALI 332
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 29/170 (17%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
DF K D +G P+V Y + EA E++ + + PD T
Sbjct: 93 SGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSV-PDGMT 151
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH--------------NVI 96
YTA++ CK R+++ M++ + +E+ + PNV +L+ H +I
Sbjct: 152 YTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMI 211
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+ P T+ +++ LC G+ A + M G +P Y +LI
Sbjct: 212 QRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLI 261
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 33/145 (22%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M ++G P+ +Y +L +A ML + +G PDV T ++D FC++ R
Sbjct: 1 MLEDGVVPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKR 60
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
EV EL E GV + + +N +++AL G D
Sbjct: 61 VGEVCELFQELESNGVAVGM------------------LAYNAILKALMCSGDFDGGFKF 102
Query: 127 LFLMYEHGKIPS----RTLYDTLIK 147
+ G +P +T+ D LIK
Sbjct: 103 SDIAVGDGSLPHVLAYKTMLDCLIK 127
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 62/202 (30%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK---------- 48
+AR ++ M GY P+V T +L E E+ ++++G+
Sbjct: 28 QARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAIL 87
Query: 49 -------------------------PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
P V Y ++D K G++ E E++ E I++ V
Sbjct: 88 KALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSVP 147
Query: 84 PN-----VVTLIHLHNVIDIGH-----------IPRTITFNNVIQALCGVGKIDKALLLL 127
+++++ HN D +P + +++ A C K+D A L
Sbjct: 148 DGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLF 207
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
M + G PS + Y L++ L
Sbjct: 208 VEMIQRGYGPSASTYGLLLRCL 229
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K A ++D + G P+V TY ++EA + L + N GL+PD
Sbjct: 262 CRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDG 321
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY ++DG+CK+G ++L AI +G +P T+ ++I
Sbjct: 322 FTYNTLIDGYCKMGMLQNAEKILQGAICKGF------------------VPDEFTYCSLI 363
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC +ID+AL L G P+ LY+ LIK L Q+
Sbjct: 364 NGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQE 404
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C ++ A + + G P V Y IL+A +M+ + +G D+
Sbjct: 367 CQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDI 426
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVIDI--- 98
+TY V++G CK+G ++ L+N+AI +G P+V T + + I I
Sbjct: 427 WTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNK 486
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P IT+N+V+ L K + + M E G +P++ Y+ L + L
Sbjct: 487 MWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESL 541
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA V + M P+V +Y + +A+++ + +KN G+ PD
Sbjct: 86 YGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPD 145
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYT+T + FC+ R + + LLN + +G N V + +
Sbjct: 146 VYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFN 205
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ IG P TFN ++ LC G++ ++ LL + + G + ++ I+ L
Sbjct: 206 DMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGL 261
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + M G P+V+T+ L E+ +L V G+ +++T+ +
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFI 258
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HLHNVIDIGHI 101
G C+ G + M +L+ I G+TP+VV TLI +LH +++ G
Sbjct: 259 QGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLE 318
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P T+N +I C +G + A +L G +P Y +LI L Q
Sbjct: 319 PDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQ 368
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 36/166 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT--------------ILEAYEMLMNVKNDGL 47
YC + ++++ M+ +G P+V TY ++E +E ++ G
Sbjct: 471 YCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVE---KGC 527
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
P+ TY + + CK G+ NE ++L++E + +G+TP+ T++F
Sbjct: 528 VPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPD------------------TVSF 569
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL-YDTLIKKLDQQ 152
+I G + A L M E K+ T Y+ +I ++
Sbjct: 570 ATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEK 615
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
++ + + G PD YTY ++DGFC G ++ + L E IE+G
Sbjct: 623 KLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGF-------------- 668
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
IP TF VI LC ++ +A+ ++ M +G +P
Sbjct: 669 ----IPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVP 705
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N +A +++D M G PN+ T+ IL + E+ + G+ D
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 437
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TY ++ GFC++G+ N EL E + R V PN+VT I L + D G + +
Sbjct: 438 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE 497
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C K+D A L + G P Y+ +I L
Sbjct: 498 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN + + K++ M +PNV T+++L EA E+ + + G+ PD
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 367
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVID------- 97
TYT+++DGFCK ++ ++++ + +G PN+ T L N ID
Sbjct: 368 TITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 427
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + T+T+N +IQ C +GK++ A L M P+ Y L+ L
Sbjct: 428 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 483
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI---- 90
A+ + ++ G+ ++ TY ++ GFC GR ++ +LL + I+R + PNVVT
Sbjct: 282 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 341
Query: 91 ------------HLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
LH +I G P TIT+ ++I C +DKA ++ LM G P
Sbjct: 342 SFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 138 SRTLYDTLI 146
+ ++ LI
Sbjct: 402 NIRTFNILI 410
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C A + + GY PN T++ L EA E++ + G KP
Sbjct: 132 CFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 191
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIP------ 102
D+ T +++G C G+ E M L+++ +E G PN VT + NV+ G
Sbjct: 192 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 251
Query: 103 ----------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ +I LC G +D A L M G + Y+ LI
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI 305
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P V ++ + K + + V+ L + +G+ N+ TL + N
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I +G+ P TITF+ +I LC G++ +AL L+ M E G P +TL+ L
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + +A+++ ++ G+KP V TY ++ G CK G +E ELL +E
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA-ELLFRKMEED-- 572
Query: 84 PNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
GH P T+N +I+A G G K++ L+
Sbjct: 573 ---------------GHAPDGWTYNILIRAHLGDGDATKSVKLI 601
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 30/144 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C EA +++ M + G P+V TY+ + +AY +L ++ G PD
Sbjct: 268 CKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPD 327
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYTA++D FCKVGR +E EL ERG +VV +N +
Sbjct: 328 VVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVV------------------AYNIL 369
Query: 111 IQALCGVGKIDKALLLLFLMYEHG 134
I+ C K+D+A+ ++ M G
Sbjct: 370 IRGYCRAAKVDEAIAMIEEMAGRG 393
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 20/138 (14%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T L+ + ++++K +KPD + YT V+ CK+ + + + ++ G P+ VT
Sbjct: 30 TNKALQIFHQMIDMK---VKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVT 86
Query: 89 ---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
L+H ++ GH P +T+ V+ C G+ID+AL L+ +
Sbjct: 87 YTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLK 146
Query: 132 EHGKIPSRTLYDTLIKKL 149
G+ PS +LY TLI L
Sbjct: 147 GTGRSPSGSLYSTLIDGL 164
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+ V M + G P+ +Y ++ EA E++ P V
Sbjct: 198 CKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGV 257
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTL-----------------IHLH 93
T ++DG CK R E +L +E G P+VVT I L
Sbjct: 258 PVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQ 317
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G +P +T+ +I A C VG++D+A L M+E G Y+ LI+
Sbjct: 318 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIR 371
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C NK D A + M +G P+ TYT+L + +++ + + G P
Sbjct: 60 CKINKLDL--AASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSP 117
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLI----------HLHNVI 96
++ TY V++G+CK GR ++ + L+ G +P+ TLI +
Sbjct: 118 ELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF 177
Query: 97 DI--GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G + I + + I LC GK+D+A + M E G P Y+ +I L
Sbjct: 178 EMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSL 232
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A V+ M G P+V TYT + EA E+ + G DV
Sbjct: 304 CKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDV 363
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
Y ++ G+C+ + +E + ++ E RG+
Sbjct: 364 VAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A+ V D + G P+V ++ L E + + ++ G++PD
Sbjct: 146 FCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYT++ +++G CK + ++ EL +E ++ G+ PN VT L
Sbjct: 206 VYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYR 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + + L+ M G P + Y TLI
Sbjct: 266 QMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLI 318
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H I A + ++ GL+P V ++ +M+G+ K+G +E L +
Sbjct: 137 YFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSV 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++B G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M +P Y+TLI
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLI 283
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D + +ID M G P+ TYT L A+E + + ++ D
Sbjct: 287 CKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
YTA++ G C+ GRS + ++L E + G+ P + T
Sbjct: 347 XAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
++A +ML + + GLKP++ TYT +++ FCK G +LL E G PN VT
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKVI+++ Y V + YE + G +Y + +M FCK G
Sbjct: 101 FDTCRKVIEHLMKLKYFKLVWGF-----YEESLEC---GYPASLYFFNILMHNFCKEGEI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIPRTITFNNVIQA------------- 113
+ + + G+ P+VV+ L N I IG + +V+QA
Sbjct: 153 RLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVL 212
Query: 114 ---LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC K+D A L M ++G +P+ + TLI
Sbjct: 213 INGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLI 248
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K+D + ++ M + G PNV Y + +A +L + PDV T
Sbjct: 359 KSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVT 418
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
+ ++ FC+ G E ++LL EAI R + PN ++ LIH L +I
Sbjct: 419 FNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMI 478
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
GH P +T +I L G++D+AL++ M E +P +Y+ LI L
Sbjct: 479 GRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGL 531
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C +A V++ M + + P+V T+ L EA ++L L+P
Sbjct: 392 CKCRSAS--QALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEP 449
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI------- 101
+ +YT ++ GFC G +LL E I RG TP+VVTL L H ++ G +
Sbjct: 450 NQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVR 509
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +N +I LC + A LL M E P + +Y TLI
Sbjct: 510 EKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLI 563
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+ARK+ ++M + G + ++ Y + EA + +++ G PD +TYT ++
Sbjct: 574 DARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLI 633
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG+ K G + L + ++R PN+V T+ ++I C +G
Sbjct: 634 DGYAKKGDIKAALRFLCDMMKRRCKPNIV------------------TYASLICGYCNIG 675
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D A +L M G P+ Y LI L
Sbjct: 676 NTDSAEVLFASMQSEGLFPNVVHYTVLIGSL 706
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---------- 91
+G P Y ++DG+C+ G + LL E +G+ P VVT +IH
Sbjct: 305 EGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTK 364
Query: 92 ----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + + G P +N VI ALC +AL +L M P ++TLI
Sbjct: 365 IESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLI 423
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA V + M + P+ Y +L A +L+ + ++PD + YT ++
Sbjct: 504 EALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLI 563
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DGF + + ++ ++ E+G ++V +N +I+ C G
Sbjct: 564 DGFIRSDKLSDARKIFEFMEEKGGYRDIV------------------AYNAMIKGYCKSG 605
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++A++ + M + G IP Y TLI
Sbjct: 606 MMNEAVMCMSSMRKVGCIPDEFTYTTLI 633
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 26/162 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAY--EMLMNVKNDG 46
YCN + A + M G PNV YT+L AY ML+N
Sbjct: 671 YCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLN----H 726
Query: 47 LKPDVYTYTAVMDGF--CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
P+ T +++G C+ G N ++A ++ +V +I G PR
Sbjct: 727 CSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDV-----FKGLISDGLDPRI 781
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N +I +LC + KA+ L M G +P + +L+
Sbjct: 782 SAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLL 823
>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
Length = 719
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C ++ +V+ M + P + TY LEAY + ++K+ G PD
Sbjct: 273 FCQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPD 332
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPR------ 103
YT ++ G C++G E +L E +++G+ PN T LH + G R
Sbjct: 333 RVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYN 392
Query: 104 ----------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
T+T N +I LC GK D+A + M E G Y++LI+
Sbjct: 393 EMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIR 446
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +V + + D GY P+ YT + EA ++ + + G++P+
Sbjct: 309 CKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNA 368
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
YTY ++ G K G EL NE +G VT +
Sbjct: 369 YTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKK 428
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ + G IT+N++I+ C GK+D+ + LL + PS +LY+ LI K
Sbjct: 429 MSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIK 482
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 63/212 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C DF A++++ M G HPN TY +
Sbjct: 484 CKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTT 543
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
EA EM + G+K D TY +++ GFCK G+ + M LLNE
Sbjct: 544 ATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNE 603
Query: 77 AIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGK 119
+ +G+ P+ + L +++ G P ++I LC G+
Sbjct: 604 LVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGR 663
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + L M E+ P + ++ L + L Q
Sbjct: 664 ATEGMDRLMGMLENKIKPKKAAFEDLAECLIQ 695
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E +++ + P+V+ Y +L A +L ++ + GL P+
Sbjct: 448 FCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPN 507
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
YTY ++ G K G V EL NE +G T +
Sbjct: 508 AYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFK 567
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ + G IT+N++I+ C GK+ K++ LL + G PS + Y +LI +L Q
Sbjct: 568 KMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQ 625
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 68/190 (35%), Gaps = 64/190 (33%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C F EARK+ M D G PN TY +
Sbjct: 344 CEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTT 403
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
EA+E+ + G++ D TY +++ GFCK G+ +E M LLNE
Sbjct: 404 VTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNE 463
Query: 77 AIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + P+ V+L L +I C G + A LL M G
Sbjct: 464 LVAQDPQPS-VSLYEL-----------------LIIKSCKDGDFEAAKRLLGDMSSKGLH 505
Query: 137 PSRTLYDTLI 146
P+ YDT++
Sbjct: 506 PNAYTYDTML 515
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ YE+L GL P TY ++ GFC+ + E+L+ I R P + T
Sbjct: 244 VARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQE 303
Query: 92 LHNVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ N + D G+ P + + +I LC +G +A L F M + G
Sbjct: 304 IINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKG 363
Query: 135 KIPSRTLYDTLI 146
P+ Y+T++
Sbjct: 364 MQPNAYTYNTML 375
Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 29 TYTILEAYEMLMNVKNDGLKPDVYTYTA--VMDGFCKVGRSNEVMELLNEAIERGVTP-- 84
T + E Y+ ++ G D T T ++ FC G+ ELLN+ ++ G+ P
Sbjct: 207 TELLFEFYQEMIKA---GTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGN 263
Query: 85 --------------NVVTLIH-LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
N ++ LH +I H+P T+ +I LC + +A +
Sbjct: 264 PTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFND 323
Query: 130 MYEHGKIPSRTLYDTLIKKL 149
+ + G P R +Y T+I L
Sbjct: 324 LKDRGYAPDRVMYTTMIHGL 343
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C ++ A K+ M D PNVTTY I +A + + + G PD
Sbjct: 167 FCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPD 226
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY+ ++ GF + ++ EL I RG PN VT L+H
Sbjct: 227 VITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFR 286
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G P +T+ ++ C VGKI++A+ + M G P Y+ L+K
Sbjct: 287 KMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLK 340
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 37/155 (23%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++ M + G P+ TYT L +A E+ + + G PDV
Sbjct: 273 CKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDV 332
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
Y ++ GF + G+ E +L + R P+ V+ HN++
Sbjct: 333 VAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVS----HNIMIDGLSKAKRLDDAVE 388
Query: 97 -------DIGHIPRTITFNNVIQALCGVGKIDKAL 124
D G P +T+N++I LCG ++ +A+
Sbjct: 389 VFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAM 423
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 56/150 (37%), Gaps = 52/150 (34%)
Query: 49 PDVYTYTAVMDGFCKV-----------------------------------GRSNEVMEL 73
PDV +Y+ ++DGFCK+ GR + +
Sbjct: 155 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 214
Query: 74 LNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
E I G +P+V+ TLIH +I G P +T+N ++ LC
Sbjct: 215 YEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCK 274
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K D+A L M E G P + Y TL+
Sbjct: 275 ESKPDEAHELFRKMVERGCDPDKVTYTTLL 304
Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113
+TA + G CK G+ + E E + + H+VI Q
Sbjct: 14 WTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVI---------------QE 58
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G++D AL LL M + G P + LI +L
Sbjct: 59 LCKAGRVDSALSLLETMIKRGYCPDMATHSMLINEL 94
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 23/122 (18%)
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-----------IGHI 101
T +V+ CK GR + + LL I+RG P++ T L N + + +
Sbjct: 51 TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 110
Query: 102 PRTI--------TFNNVIQALCGVGKIDKALLLLFLMY-EHGKIPSRTLYDTLIK---KL 149
RTI ++N+++ +LC K+ +A + M E +P Y LI K+
Sbjct: 111 NRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKI 170
Query: 150 DQ 151
D+
Sbjct: 171 DE 172
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++D M +NG+ PN TY + A +L + +K DV
Sbjct: 21 CREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKADV 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
YTA++D CK G ++ L E ++G+ PNV+T +I L +
Sbjct: 81 VIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRD 140
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I+ P +TFN +I A GKI +A L M P Y++LI
Sbjct: 141 MIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLI 192
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++ M ++ P+V T+ L EA E+ + + PD
Sbjct: 126 CSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDT 185
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++DGFCK R ++ + + + +G +PNV IT N +I
Sbjct: 186 ITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNV------------------ITINTLI 227
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C ++D + LL M G +P Y+TLI Q
Sbjct: 228 GGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQ 267
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G + DV + +M+G C+ GR E L++ +E GH P +
Sbjct: 5 GCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVEN------------------GHQPNEV 46
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ ++ +C +G D AL LL M E +Y +I +L
Sbjct: 47 TYGTIVNGMCKMGDTDSALNLLRKMDESHIKADVVIYTAIIDRL 90
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+ + D M G PNV T L + ++L + GL PD
Sbjct: 195 FCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPD 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER 80
+Y ++ GFC+ G N +L E I +
Sbjct: 255 SVSYNTLIHGFCQAGDLNAAQDLFQEMISQ 284
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EAR V+D M G N Y L +A M ++ + G KPD
Sbjct: 452 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 511
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
++T+ +++ G CKV + E + L + + GV N +T LIH ++
Sbjct: 512 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 571
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G IT+N +I+ALC G I+K L L M G P+ + LI L
Sbjct: 572 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 627
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVI-DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
Y ++ EA+ V+ + M G P++ TY L A E++ ++ G +P
Sbjct: 381 YVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEP 440
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHL 92
+V TYT ++D FCK GR E +L+E +G+ N V L
Sbjct: 441 NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 500
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P TFN++I LC V K ++AL L M G I + Y+TLI
Sbjct: 501 GDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 554
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 33/165 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + + M G +PN + IL A E L ++ + GL PD+
Sbjct: 593 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 652
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++++G CK GR+ E + L ++ G+ P+ IT+N +I
Sbjct: 653 VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD------------------AITYNTLI 694
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRT----LYDTLIKKLDQQ 152
C G D A LLL + G IP+ L IK+ DQ+
Sbjct: 695 SWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHL 92
YEML + G+ P VYT+ VM C V + LL + G PN + TLIH
Sbjct: 224 YEML----SKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHA 279
Query: 93 HNVID--------------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
+ + +G IP TFN+ I LC + +I +A L+ M G P+
Sbjct: 280 LSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPN 339
Query: 139 RTLYDTLIKKL 149
Y L+ L
Sbjct: 340 SFTYGVLMHGL 350
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA- 77
F++ H I EA +++ + G P+ +TY +M G C++G+ +E LLN+
Sbjct: 308 FNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP 367
Query: 78 --------------IERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+ RG ++H +++ +G P T+N +I LC G + A
Sbjct: 368 NPNVVLFNTLINGYVSRGRLDEAKAVMH-ESMLSVGCGPDIFTYNTLILGLCKKGYLVSA 426
Query: 124 LLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
L+ M G P+ Y LI + ++
Sbjct: 427 RELMNEMQIKGCEPNVITYTILIDRFCKE 455
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 36/159 (22%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P V T+ ++ A +L ++ G P+ Y ++ KVGR
Sbjct: 226 MLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGR 285
Query: 67 SNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI-------GHIPRTITFNN 109
NEV++LL E + G P+V T ++ +H + G P + T+
Sbjct: 286 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 345
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSR--TLYDTLI 146
++ LC +GK+D+A +LL K+P+ L++TLI
Sbjct: 346 LMHGLCRMGKVDEARMLL------NKVPNPNVVLFNTLI 378
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
+LM +K +G+ + +M + + G + LL + RGV T + V+D
Sbjct: 151 LLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM--RGVYSCEPTFRSYNVVLD 208
Query: 98 I---GHIPRTI-----------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ G+ P+ + TF V++ALC V ++D A LL M HG +P
Sbjct: 209 VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVP 268
Query: 138 SRTLYDTLIKKLDQ 151
+ +Y TLI L +
Sbjct: 269 NAIVYQTLIHALSK 282
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 36/177 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC + + EA + + M + G PN + ++++ Y E L ++ G+KPD
Sbjct: 243 YCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPD 302
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V T++ +M+ + G E+ N+ ++ G+ P+ IH ++++ G++
Sbjct: 303 VVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPD----IHAYSILAKGYVRAGQPRKAE 358
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + F +I C GK+D+A L M+E G P+ Y+TLI
Sbjct: 359 ALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLI 415
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA + N+ +G KP + TYT ++ + R + LL++ + G+ P+
Sbjct: 40 EAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPD-------- 91
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I N +I A GK+D+A+ + M E+G P+ + Y+TLIK
Sbjct: 92 ----------SILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIK 135
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C K EA V+ M +G P+V TY T+ AY +++ + + +KP+
Sbjct: 173 WCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPN 232
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------HNVID---- 97
T ++ G+CK G E + L E GV PN V L N +D
Sbjct: 233 ERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALT 292
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P +TF+ ++ A G ++ + M + G P Y L K
Sbjct: 293 LMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAK 346
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA ++ +K G KP TY ++ GF GR E M+LL G NV
Sbjct: 110 EAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMM---GQDENVK------ 160
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P T+N +IQA C K+++A +L M G P Y+T+ + Q
Sbjct: 161 --------PNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQ 210
>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g12700, mitochondrial-like
[Glycine max]
Length = 555
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 30/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N+ EAR++ + M G P+V Y +L EA + ++ L P+
Sbjct: 310 FCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPN 369
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY +++DG CK+GR + V EL++E +RG +P++V T+N
Sbjct: 370 LATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIV------------------TYNIF 411
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ A C +KA + LF G P +YD +++
Sbjct: 412 LDAFCKSKPYEKA-ISLFRQIVQGIWPDFYMYDVIVE 447
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + EA +++ M +P+ T+ IL EA + + G KPD+
Sbjct: 241 CSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDI 300
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNVIDI---------- 98
TY A+M+GFC +E EL N ++RG+ P+V+ LI+ + ID+
Sbjct: 301 VTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKE 360
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P T+N++I LC +G++ L+ M + G+ P Y+ +
Sbjct: 361 IRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFL 412
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC++ A ++ + G+ PN+ T+ L +A +++ G
Sbjct: 99 CYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPL 158
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
D ++Y ++++G CK G++ + ++LL + E V PN++T L
Sbjct: 159 DEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLF 218
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V G + + +N++I C VG+ +A LL +M P ++ L+ L ++
Sbjct: 219 SLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKE 278
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
+A ++L ++ D ++P++ TY+ V+DG CK + + L + RG+ +VV +LI
Sbjct: 178 DALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLI 237
Query: 91 H-------------LHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H L ++ G+I P TFN ++ ALC G+I +A + +M + G+
Sbjct: 238 HGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEK 297
Query: 137 PSRTLYDTLIK 147
P Y+ L++
Sbjct: 298 PDIVTYNALME 308
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 28/151 (18%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND---GLKPDVYTYTAVMDGF 61
++++D M D G P++ TY I + YE +++ G+ PD Y Y +++ F
Sbjct: 390 QELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIWPDFYMYDVIVENF 449
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
CK E +++ EA++ LIH G P T+ +I ALC D
Sbjct: 450 CK----GEKLKIAEEALQH-------LLIH-------GCCPNVRTYTIMINALCKDCSFD 491
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+A+ LL M ++ P ++T+I L ++
Sbjct: 492 EAMTLLSKMDDNDCPPDAVTFETIIGALQER 522
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A + + ++ +G PNV TYTI+ EA +L + ++ PD
Sbjct: 449 FCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPD 508
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
T+ ++ + +++ +L E IERG+ + L+H
Sbjct: 509 AVTFETIIGALQERNETDKAEKLRLEMIERGLVNDEARLVH 549
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P ++ + ++ ++G + L ++ +G+TP++ TL L N
Sbjct: 53 PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSL 112
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +TFN +I C G + KA+ + G Y +LI L
Sbjct: 113 LGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGL 170
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A + + + G+ P + T T +++ +C + LL ++ G PN+VT L N
Sbjct: 74 AISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLIN 133
Query: 95 VIDI-GHIPRTITFN----------------NVIQALCGVGKIDKALLLLFLMYEHGKIP 137
I G + + + F ++I LC G+ AL LL M E P
Sbjct: 134 GFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRP 193
Query: 138 SRTLYDTLIKKL 149
+ Y T+I L
Sbjct: 194 NLITYSTVIDGL 205
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ + EAR++ + M G P+V Y +L EA + + N L P
Sbjct: 310 YCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPT 369
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ +Y +++DG C GR + V +LL+E P+VV T+N +
Sbjct: 370 IASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVV------------------TYNIL 411
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I ALC G+I +AL +L +M + G P+ Y+ ++
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMM 447
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 36/176 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN +K++D M + P+V TY IL EA +L+ + G+KP++
Sbjct: 381 CNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNI 440
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH----------- 100
TY A+MDG+C N ++ N ++ G+ P+++ +NV+ G+
Sbjct: 441 VTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILN----YNVLINGYCKTEMVDEAIV 496
Query: 101 ----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IP ++N++I LC +G+I LL M + G+ P Y+ L+
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILL 552
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +N+ A+ + + M +G P++ Y +L EA + +++ L PD
Sbjct: 450 YCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPD 509
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
+ +Y +++DG C +GR V ELL+E + G +P+V+T I L
Sbjct: 510 IASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFR 569
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I G P T + ++ LC K+ A L + HG P+ Y LI L
Sbjct: 570 QIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINAL 624
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---- 87
ILEA +L + G KPD+ TY A+M+G+C +E EL N ++RG+ P+V+
Sbjct: 281 ILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNV 340
Query: 88 -------------TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
++ + + +P ++N++I LC G+I LL M+
Sbjct: 341 LIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSA 400
Query: 135 KIPSRTLYDTLIKKL 149
+ P Y+ LI L
Sbjct: 401 QPPDVVTYNILIDAL 415
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M + PN+ Y+ L +A + + G+ D TY +++D
Sbjct: 179 ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C VGR EV +LL + + V P+ TFN +I ALC G+
Sbjct: 239 GCCSVGRWQEVTQLLTKMVRENVDPD------------------DYTFNILIDALCKEGR 280
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I +A +L +M + G+ P Y+ L++
Sbjct: 281 ILEAQGVLAMMSKRGEKPDIVTYNALME 308
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
CY +++ A ++ + +GY PN+ T+ I +A + N+ G
Sbjct: 99 CYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLF 158
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
D +TY +++G K G+ + LL E + V PN+V L
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G + +T+N++I C VG+ + LL M P ++ LI L
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDAL 275
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---- 89
E ++L + + + PD YT+ ++D CK GR E +L +RG P++VT
Sbjct: 248 EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307
Query: 90 --------IH-----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+H + ++ G P + +N +I C +D+A++L + +
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLV 367
Query: 137 PSRTLYDTLIKKL 149
P+ Y++LI L
Sbjct: 368 PTIASYNSLIDGL 380
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------ 88
A + +++ G+ P + T+T +++ + + LL ++ G PN+VT
Sbjct: 74 AISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIIN 133
Query: 89 -----------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L N++ G++ T+ +I L G+I AL LL M + P
Sbjct: 134 GFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQP 193
Query: 138 SRTLYDTLIKKL 149
+ +Y LI L
Sbjct: 194 NLVMYSALIDGL 205
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A + ++ +G PNV TYTIL EA +L ++++ PD
Sbjct: 590 CKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDA 649
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+ ++ + +++ +L E I RG+ +L HNV P + F +V
Sbjct: 650 ITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEKSLNQSHNVF----FPASSGFQSVT 705
Query: 112 Q 112
+
Sbjct: 706 E 706
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P + ++ ++G + L + +G++P++ T L N
Sbjct: 53 PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G+ P +TFN +I C G I KAL + G + + Y TLI L +
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172
>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
Length = 461
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 28/158 (17%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
N + A +I M G PN TYTIL E E+ + + L P+VYTY
Sbjct: 275 NRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQRLLDRKLAPNVYTY 334
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
VM CK GR ++ L + TP P IT+ +I L
Sbjct: 335 NTVMSALCKAGRLDQAHRLFGVMLASDCTP-----------------PNAITYRALIHGL 377
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C ++++A+LLL M + G P Y T++ +Q
Sbjct: 378 CLKMELERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQ 415
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 8 FFEAR------KVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
F +AR KV M G P++ TY IL AY++L + DG+ PD
Sbjct: 201 FLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPD 260
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V T+ ++++G + R + + L+ E + RG PN +T L
Sbjct: 261 VVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQ 320
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL-YDTLIKKL 149
++D P T+N V+ ALC G++D+A L +M P + Y LI L
Sbjct: 321 RLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGL 377
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 35 AYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
A E L KN L+ V TY+ ++ R+N+ +ELL + G+ +
Sbjct: 70 ALEFLREAKNSFSLRASVSTYSILVAALTAAKRNNDALELLEQMESVGLEAD-------- 121
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T++ +I +LC G +DKA +L+ M +P +YD +I++L +
Sbjct: 122 ----------KDTYSLIIHSLCKSGMVDKAKVLVERMISRNCVPDARIYDPVIEELSK 169
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 27/154 (17%)
Query: 26 NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
+V+TY+IL +A E+L +++ GL+ D TY+ ++ CK G ++ L+
Sbjct: 86 SVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLV 145
Query: 75 NEAIERGVTPN----------------VVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
I R P+ V + + D H +T+N+++
Sbjct: 146 ERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCTSVVTYNSLVLGFLKAR 205
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ + + + M G P Y+ L + L +
Sbjct: 206 RLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRH 239
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +V + + + GY +V T + L +A ++L ++ +G PDV
Sbjct: 457 CKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDV 516
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
YT ++ GFCK + ++ + +E +++G P V+T + L
Sbjct: 517 VAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKT 576
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G P I + +VI LC D+A L LM + G P+ Y+ L+ KL
Sbjct: 577 MLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKL 631
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + ++ M D G P V TY+I+ + +L + G+ PD
Sbjct: 526 FCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPD 585
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHN 94
YT+V+DG CK +E EL + G P VVT IHL
Sbjct: 586 AIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLE 645
Query: 95 VIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V++ G +P T+T+N+V + DKA L M G P+ +Y L+ KL
Sbjct: 646 VMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKL 701
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVVTLIHL 92
EAY++ N + PD TY+ +++GFCK + LL+E +RG+ P N V +
Sbjct: 150 EAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTII 209
Query: 93 HNVIDIGHI---------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ D G + P IT+ ++ ALC +I A L+L M E G P
Sbjct: 210 KGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAP 269
Query: 138 SRTLYDTLI 146
+ Y+TLI
Sbjct: 270 NVVTYNTLI 278
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TYTIL +A +L ++ G P+V TY +++GFCK+G +E + L
Sbjct: 234 PSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVL 293
Query: 74 LNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
N+ +E +P+V T LI L ++ G P IT+N ++ +L
Sbjct: 294 FNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVK 353
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK A L +M PS ++ +I
Sbjct: 354 SGKYIDAFNLAQMMLRRDCKPSHFTFNLMI 383
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 41/162 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+C + EA + + M +N P DV+TY ++DG+
Sbjct: 281 FCKLGNMDEAVVLFNQMLENSCSP------------------------DVFTYNILIDGY 316
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI----------PRT 104
CK R + +LL E ++ G PN +T L+ ID ++ P
Sbjct: 317 CKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSH 376
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I C VG++D A L LM + G +P Y+ +I
Sbjct: 377 FTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMI 418
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + K++ M G PN TY L +A+ + + KP
Sbjct: 316 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS 375
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+T+ ++D FCKVG+ + EL +RG P++ T+N +
Sbjct: 376 HFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY------------------TYNIM 417
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C +ID A LL M E G P Y++++ L
Sbjct: 418 ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL 456
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-- 92
AYE+ + + G PD+YTY ++ G C+ R ++ +LL E G P+VVT +
Sbjct: 395 AYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVS 454
Query: 93 -----------HNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ V ++ G+ +T + +I LC ++D A LL M +G P
Sbjct: 455 GLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAP 514
Query: 138 SRTLYDTLIK---KLDQ 151
Y LI K DQ
Sbjct: 515 DVVAYTILIHGFCKADQ 531
>gi|297812073|ref|XP_002873920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319757|gb|EFH50179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 483
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 36/180 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
+C ++ +++ M + P++ TY LEAY + N+K G PD
Sbjct: 258 FCEIENYACISEILHTMIAWNHFPSIYTYQRIIKGLCMNKKELEAYCIFKNLKEKGYAPD 317
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR------- 103
YT ++ GFC+ G +L E I++G+ PN +NV+ GH R
Sbjct: 318 RVVYTTMIHGFCEKGWLGSARKLWFEMIKKGMRPNEFA----YNVMMHGHFKRGEISLGE 373
Query: 104 --------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T++ N VI+ LC GK D+A + M E G P+ Y+ LIK L
Sbjct: 374 AFYNEMLRNGYGETTLSCNTVIRGLCSHGKSDEAFEIFKKMSETGVTPNAITYNALIKGL 433
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 37/163 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAY--EMLMNVKNDG 46
+C K ARK+ M G PN Y ++ EA+ EML N G
Sbjct: 328 FCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMMHGHFKRGEISLGEAFYNEMLRN----G 383
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
+ V+ G C G+S+E E+ + E GVTPN IT
Sbjct: 384 YGETTLSCNTVIRGLCSHGKSDEAFEIFKKMSETGVTPN------------------AIT 425
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I+ LC K++K + L + G PS Y L++ L
Sbjct: 426 YNALIKGLCKENKVEKGMKLYKELKALGLKPSGAAYAALVRNL 468
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ E YE+L GL P Y ++ GFC++ + E+
Sbjct: 229 VSEGYELLKQGLKQGLDPGHDVYAKLISGFCEIENYACISEI------------------ 270
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LH +I H P T+ +I+ LC K +A + + E G P R +Y T+I
Sbjct: 271 LHTMIAWNHFPSIYTYQRIIKGLCMNKKELEAYCIFKNLKEKGYAPDRVVYTTMI 325
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ID M G PN TY +L +A E+L N+ + G KP
Sbjct: 213 CKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPST 272
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI--- 98
Y V+ G C R + EL+ E + PN T +I+ L I +
Sbjct: 273 VNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEK 332
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +T+N +I LC +D A+ LL M +G P Y+TL+K L
Sbjct: 333 MSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGL 387
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 32/159 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +AR+V+ M PN TY L +A +L ++ G PD
Sbjct: 145 YCRAGRLGDARRVVGGM---PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPD 201
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY +++ CK + MEL++ G TPN +T+N +
Sbjct: 202 VVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPN------------------NVTYNVL 243
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +CG G +D AL LL + HG PS Y+T++K L
Sbjct: 244 MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 282
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A +++D M NG P+ T+ L +A E+ + + G P+
Sbjct: 388 CSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNS 447
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----------------TLIHLHNV 95
TY+ ++ G K + ++ +EL NE +G P+ + + + +
Sbjct: 448 ITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKL 507
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G P T+ +N ++ LC GK + A+ ++ M G +P Y LI+ L
Sbjct: 508 QDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGL 561
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A ++++ M +G N+ TY + A +L +K+ G KPD+
Sbjct: 318 CRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDI 377
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY ++ G C + + EL++ + G P+ VT L
Sbjct: 378 VTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQ 437
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D G P +IT++ +I L K+D+AL L M G P + +Y L + L+
Sbjct: 438 MPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDK-IYQLLAECLN 492
>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
Length = 543
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D EAR++ M G P+V TY ++ EA ++ GL PD
Sbjct: 387 HCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPD 446
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
VYTY +++ G C G+ + ++L E RG PNVV + +
Sbjct: 447 VYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVV------------------AYTAL 488
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ ++A L M + G P +LY L+ L
Sbjct: 489 ISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSL 527
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 33/159 (20%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGL 47
CY + D +++++ M + G V TYTIL EA M KN +
Sbjct: 176 CYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKN--V 233
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
DVY YTAV++ +C+ G E+ +E + G+ PN T+
Sbjct: 234 AGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPN------------------ERTY 275
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I C +G+++ A +LL M G ++ +++T+I
Sbjct: 276 GVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMI 314
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 77/208 (37%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLM----------- 40
YC + A +V D NG PN TY +L EA EML+
Sbjct: 247 YCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHN 306
Query: 41 ----NVKNDG---------------------LKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
N DG ++ DVYTY + G C+V R E LL+
Sbjct: 307 QIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLH 366
Query: 76 EAIERGVTPNVV---TLIHLH--------------NVIDIGHIPRTITFNNVIQALCGVG 118
IE+GV PN V TLI +H + G +P +T+N ++ G
Sbjct: 367 IMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKG 426
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +A M + G +P Y +L+
Sbjct: 427 SIREAERFRKEMEKKGLVPDVYTYASLV 454
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 71/183 (38%), Gaps = 36/183 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A KV M G +V TY L EA +L + G+ P+
Sbjct: 317 YCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPN 376
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
TYT ++ CK G E L E +G P+VVT +NV+ G+I
Sbjct: 377 YVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVT----YNVMMDGYIKKGSIREAE 432
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+ +++ C GK+D AL L M G P+ Y LI L
Sbjct: 433 RFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGL 492
Query: 150 DQQ 152
++
Sbjct: 493 AKE 495
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A I G+ P+ TY L A E++ + GL PD
Sbjct: 283 FCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPD 342
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY +++ G CK+G E +++L++ + R +PN V T+N +
Sbjct: 343 IYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAV------------------TYNAI 384
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +LC ++D+A + L+ G +P +++LI+ L
Sbjct: 385 ISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGL 423
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +N EA ++ + G P+V T+ L A ++ +K G +PD
Sbjct: 389 CKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDE 448
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------------HLHNV 95
+TY ++D C + E + LL E G NVV TLI + +
Sbjct: 449 FTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDE 508
Query: 96 IDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ + R ++T+N +I LC +++ A L+ M G P + Y++L+
Sbjct: 509 MELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLL 560
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY------EMLMNVKND----GLKPDV 51
C + A +++ M G P+ TT+T I++ Y + + +K G
Sbjct: 214 CKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTD 273
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--------- 101
T +++GFCK GR ++ + + EA+ G P+ T L N + IGH
Sbjct: 274 VTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDA 333
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N++I LC +G+I++A+ +L M P+ Y+ +I L
Sbjct: 334 MLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSL 388
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++ D M G + TY L +A +++ + +GL+PD
Sbjct: 493 FCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPD 552
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TY +++ FCK G + +++ G P++V T+ +
Sbjct: 553 KFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIV------------------TYATL 594
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G++ A LL + G + + Y+ +I+ L
Sbjct: 595 ISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQAL 633
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 29/169 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D +A ++ M +G +P++ TY L A +L +++ G+
Sbjct: 563 FCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLT 622
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+ Y V+ K R++E M L E +++ P+ +T ++
Sbjct: 623 PHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFT 682
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+I+ G+IP +F + + LC + D + L+ ++ E K R +
Sbjct: 683 VEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSEREI 731
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA +++ G+ P+ TY L A E+ + G+KPD
Sbjct: 301 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 360
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI----- 98
+ Y +++ G C G ++++NE E G P++ T L + N+ D
Sbjct: 361 IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN 420
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G++P TFN +I C K+D AL L+ M+E+G P Y++++ L
Sbjct: 421 DAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 476
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 30/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +++D M P+V TY L EA L + N G PD
Sbjct: 233 CEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 291
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY ++DG+CK+ E ELL +A+ +G P+ +T+ ++I
Sbjct: 292 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD------------------QVTYCSLI 333
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G +++AL L G P +Y++L+K L
Sbjct: 334 NGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 371
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E + M G HPN TY IL EA ++++ + +GL PD
Sbjct: 477 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA 536
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLH-------N 94
++ ++ GFC+ G L + E+G + T +++H
Sbjct: 537 VSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDE 596
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ GH + T+ +I C +D+A + L M + G IPS + + +I L
Sbjct: 597 MLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 651
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 29/168 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
+AR++ D M PN+ + +LEA +L V G+ +++TY +
Sbjct: 170 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 229
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
G C+ GR E + L+ + + P+VVT + +L +++ G +
Sbjct: 230 RGLCEAGRLPEAVRLV-DGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 288
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N +I C + + +A LL G +P + Y +LI L
Sbjct: 289 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 336
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
++D + D YH +A+++ + + G+ PD++T+T + FC R + + L
Sbjct: 92 IMDALVDAAYHD--------QAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRL 143
Query: 74 LNEAIERGVTPNVVTLI------HLHNVIDI------GHI-PRTITFNNVIQALCGVGKI 120
L RG + H H+ + H+ P FN V+ ALC G +
Sbjct: 144 LRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDV 203
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A LLL + + G + Y+ I+ L
Sbjct: 204 LEAGLLLGKVIQRGMSINLFTYNIWIRGL 232
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 13/158 (8%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C D A + + + GY T+ T++ A+ +N+ + G + D
Sbjct: 546 FCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRAD 605
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY ++DG CK + L E I++G P++ T + N + + H R +
Sbjct: 606 SYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNH--RVFQAVGI 663
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
I + +G + + + + + + L + L+KK
Sbjct: 664 IHIMVKIGVVPEVVDTILNADKKEIAAPKILVEDLMKK 701
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 36/176 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + EA +D M +NG P+ TY L +A+ M+ + + GLK D
Sbjct: 399 CKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDT 458
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH----------- 100
+T ++ C + +E LL A +RG + V+ + ++ +G+
Sbjct: 459 WTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVS----YGILILGYFKDEKGDRALN 514
Query: 101 ----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P TIT+N+VI LC K+D+A+ L M E+G +P T Y+ +I
Sbjct: 515 LWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIII 570
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPD 50
YC ++ +A ++ M + G P+ +Y TIL EA ++L+++K+ GL P+
Sbjct: 223 YCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPN 282
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TY ++ G+C++G LL EA + V+ ++ +N+ +P T+N +
Sbjct: 283 KHTYNMLVCGYCRLG-------LLKEATK------VIEIMTRNNL-----LPTVWTYNML 324
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ C GKID+A + M + +P Y+TLI Q
Sbjct: 325 VNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQ 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 35/167 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN EA ++ D M P+V TY L E Y ++ + G+K +
Sbjct: 328 FCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCN 387
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ CK G E L++ E G++P+ V T+N +
Sbjct: 388 AVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCV------------------TYNTL 429
Query: 111 IQALCGVGKIDKALLLLFLMYEHG-KIPSRTLYDTL-----IKKLDQ 151
I A C GK+ KA ++ M G KI + TL L KKLD+
Sbjct: 430 IGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDE 476
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D E +I+ M G N TY I+ EA L ++ +GL PD TY
Sbjct: 368 DSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYN 427
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGV---TPNVVTLIH--------------LHNVIDI 98
++ +CK G+ + +++E +G+ T + T++H L +
Sbjct: 428 TLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKR 487
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G+I +++ +I K D+AL L M E +PS Y+++I L Q
Sbjct: 488 GYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQS 541
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 28/167 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + D M + P+ TY + +A + L + +GL PD TY ++
Sbjct: 512 ALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIH 571
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHIP 102
GFC G + + NE IE P+V T L + ++ G
Sbjct: 572 GFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDI 631
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T+N +I +LC GK + A LL M P + Y +I L
Sbjct: 632 DVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAAL 678
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 16/163 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A K+ + + G +V TY + AY++L ++ L PD
Sbjct: 609 CREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQ 668
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVID---IGHIP-RTIT 106
YTY ++ GR E E + +E G+ + + L NV+ H ++I
Sbjct: 669 YTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIA 728
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ I LC K A+ L + + G ++ Y L++ L
Sbjct: 729 YSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGL 771
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A ++ +K +P++ T +M+ + S+ ++ + R V L +
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSIL------LARQV---------LKD 203
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +G +P T +FN +I C K+ AL + M E G +P Y+T++ L
Sbjct: 204 SIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDAL 258
>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia salsoloides]
Length = 410
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + AR V D + G P+V ++ L E + + + G++PD
Sbjct: 138 FCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPD 197
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + + EL +E +++G+ PN VT L
Sbjct: 198 VYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 257
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 258 QMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLI 310
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 28/165 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M ++ TY L +A ++ ++ GLKPD
Sbjct: 243 HCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPD 302
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G E I+ + + V TLI L
Sbjct: 303 KITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLR 362
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
++ +G P T T+ +I C G + LL M G +PS
Sbjct: 363 EMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 407
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A+ +ID M G P+ TYT L
Sbjct: 279 CKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD 338
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKPD TYT +++ FCK G +LL E
Sbjct: 339 VVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKE 398
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 399 MQRDGHVPSVVT 410
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--- 101
G +Y + +M FCK G + + + G+ P+VV+ L N I +G +
Sbjct: 123 GYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 182
Query: 102 -------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T++ +I LC KID A L M + G +P+ + TLI
Sbjct: 183 FRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLI 240
>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 582
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 29/148 (19%)
Query: 13 KVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTAVMDGF 61
K++D M D G PN+ TY +IL+A +L N+K+ G++PD+YTYT ++ G
Sbjct: 406 KLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGL 465
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
C+ G+ + ++ + + +G +V T+ +IQ C G D
Sbjct: 466 CQSGKLEDAQKVFEDLLVKGYNLDVY------------------TYTVMIQGFCVKGLFD 507
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
AL LL M ++G IP+ Y+ +I L
Sbjct: 508 AALALLSKMEDNGCIPNAKTYEIVILSL 535
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A+ + D M G NV +YT + EA + ++ + P+
Sbjct: 325 YCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPN 384
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY +++DG K+G+ + V++L++E +RG PN+ IT+N++
Sbjct: 385 VVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNI------------------ITYNSI 426
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ ALC +DKA+ LL + + G P Y LIK L Q
Sbjct: 427 LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQS 468
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA ++ M +P + T++IL EA ML + D
Sbjct: 255 FCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILD 314
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDIGH---- 100
V TY ++MDG+C V N+ ++ + RGV NV + + N ++D
Sbjct: 315 VVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFE 374
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IP +T+N++I L +GKI L L+ M++ G+ P+ Y++++ L
Sbjct: 375 EMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDAL 430
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A D + G+H + +Y L A ++L V ++P+
Sbjct: 151 CLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNA 210
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
Y ++D CK N+ +L ++ + + ++P+ T LI+ LH
Sbjct: 211 VMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHK 270
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I PR TF+ ++ A C GK+ +A ++L + + I Y++L+
Sbjct: 271 MILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLM 322
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 21/121 (17%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHN 94
+G+ D +T+ +++ F ++G ++ + + +++G PN + TLI H+H
Sbjct: 99 NGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQ 158
Query: 95 VIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTL 145
++ G +++ +I LC VG+I AL LL + GK+ P+ +Y+ +
Sbjct: 159 ALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRV--DGKLVQPNAVMYNMI 216
Query: 146 I 146
I
Sbjct: 217 I 217
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+KV + + GY+ +V TYT++ A +L ++++G P+
Sbjct: 466 CQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNA 525
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TY V+ + ++ +LL E I RG+
Sbjct: 526 KTYEIVILSLFEKDENDMAEKLLREMIARGL 556
>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g31840
gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 840
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y D A V M G PNV TYTIL EA+ M + G++P
Sbjct: 366 YVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPS 425
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------IHLH----NV 95
+ TY++++DGFCK G L + I+ G P+VV + LH +V
Sbjct: 426 IVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSV 485
Query: 96 IDIGHIPR--TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+G R + FN++I C + + D+AL + LM +G P + T+++
Sbjct: 486 KMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMR 539
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C ND A ++ M + G PN TY L ++++ ++ G+ P +
Sbjct: 682 CKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSI 741
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y+ ++DG CK GR +E + ++AI+ + P+VV + +I
Sbjct: 742 VSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVV------------------AYAILI 783
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ C VG++ +A LL M +G P L L
Sbjct: 784 RGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 817
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ + D G PNV T+ L A+++ ++ G++PD+ Y+ ++D
Sbjct: 270 ASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLID 329
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI--------------------G 99
G+ K G +L ++A+ +GV +VV + ID+ G
Sbjct: 330 GYFKAGMLGMGHKLFSQALHKGVKLDVVV---FSSTIDVYVKSGDLATASVVYKRMLCQG 386
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I+ LC G+I +A + + + G PS Y +LI
Sbjct: 387 ISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 51/210 (24%), Positives = 74/210 (35%), Gaps = 67/210 (31%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N F EA KV M G P+V T+T + EA + + GL+PD
Sbjct: 506 WCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPD 565
Query: 51 VYTYTAVMDGFCK----------------------VGRSNEVMELL-------------N 75
Y ++D FCK + N V+ LL N
Sbjct: 566 ALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFN 625
Query: 76 EAIERGVTPNVVT-------------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
IE + P++VT + L V G P T+T +I LC
Sbjct: 626 NLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFG--PNTVTLTILIHVLCK 683
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + +M E G P+ Y L+
Sbjct: 684 NNDMDGAIRMFSIMAEKGSKPNAVTYGCLM 713
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++ + + + PN T TIL A M + G KP+
Sbjct: 646 YCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPN 705
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +MD F K +L E E+G++P++V+ ++ +
Sbjct: 706 AVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVS------------------YSII 747
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I LC G++D+A + + +P Y LI+
Sbjct: 748 IDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIR 784
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 46 GLKPD-VYTYTAVMDG-FCKVGRSNEVMELLNEAIERGVTPNVVT--------------- 88
G++P V + V+D FCK G + ++ +ERG +V+
Sbjct: 211 GIEPSGVSAHGFVLDALFCK-GEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQIEV 269
Query: 89 ---LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
L+ L V+D G P +TF +I C G++D+A L +M + G P Y TL
Sbjct: 270 ASRLLSL--VLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTL 327
Query: 146 I 146
I
Sbjct: 328 I 328
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + +A ++++ M G +P++ TY IL A + +++ GL P+
Sbjct: 637 CKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNC 696
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-----NVV------------TLIHLHN 94
TY A++DG+CK +LL E + RGV P NV+ L
Sbjct: 697 VTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQE 756
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G T++FN +I+ C GK+ +A LL M E IP+ Y +LI
Sbjct: 757 MLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 807
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +++ M + G P+ TY++L A+E+L +K L P V
Sbjct: 357 CKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTV 416
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------N 94
TY+ +++G C+ G +L E + G+ PN V TL+ H
Sbjct: 417 LTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILER 476
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G +P +N++I C ++++A L M E P+ Y I
Sbjct: 477 MREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 528
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
EA E+ ++ + GL PD+YTY +++GFC RS E +L E I+ G+ P +T L
Sbjct: 259 EAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALI 318
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++ G I +N ++ +C GK++KAL ++ M E G
Sbjct: 319 DGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVE 378
Query: 137 PSRTLYDTLIK 147
P Y LI+
Sbjct: 379 PDSQTYSLLIE 389
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + EA V ++ +V TY++L EA+ + ++ GL P+
Sbjct: 566 HCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPN 625
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TY +++ G CK G ++ +LL E +G+ P++V T+N +
Sbjct: 626 AFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIV------------------TYNIL 667
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G+I++A L + G P+ Y ++
Sbjct: 668 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 703
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----EAYEMLMNVK------NDGLKPD 50
+C EAR + M + PN TY +A EM + + + G+ P+
Sbjct: 496 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 555
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-- 98
V YTA+++G CK G E + + R V +V T LIH +H I
Sbjct: 556 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFS 615
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P T+N++I C G +DKA LL M G P Y+ LI L
Sbjct: 616 ELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL 671
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A+ + D + G PN TY + A+++L + G+ PD
Sbjct: 672 CKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDA 731
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV--TLIH--------------LHNV 95
+ Y +++ CK + + ++L E +E+G V TLI L +
Sbjct: 732 FIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEM 791
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I+ IP +T+ ++I C G + +A L M E +P+ Y +L+
Sbjct: 792 IEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLL 842
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + ++ M NG PN YT L E+ +L ++ G+ PDV
Sbjct: 427 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 486
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
+ Y +++ GFCK R E L E +ER + PN T + +
Sbjct: 487 FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNE 546
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G +P + +I+ C G + +A + + + Y LI L +
Sbjct: 547 MLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+ ++ M D G P TY L +A+ + + G++ +
Sbjct: 286 FCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEAN 345
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----NVIDIGHI-- 101
+ + +++G CK G+ + +E++ E +E+GV P+ T LI H N+ +
Sbjct: 346 LIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLD 405
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I LC G + +L M +G P+ +Y TL+
Sbjct: 406 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLM 458
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA +++ M + + PN TYT L EA + + ++ + P
Sbjct: 775 YCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 834
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TYT+++ G+ +G +EV L E + +G+ P+ +T
Sbjct: 835 AKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMT 872
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PDVYTYT ++ CKVG + +L E E+ + + +++D G +P T++
Sbjct: 222 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELK-RSMVDKGLVPDLYTYD 280
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I C + +A L+L M + G P Y+ LI +Q
Sbjct: 281 ILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQ 324
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 27/151 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY----------EMLMNVKNDGLKPDVY 52
C + F +A + M + G+ V+ T++E Y +L + P+
Sbjct: 742 CKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 801
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----HNVIDIGHI------- 101
TYT+++D CK G E L E ER V P T L HN+ ++ +
Sbjct: 802 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861
Query: 102 ------PRTITFNNVIQALCGVGKIDKALLL 126
P +T+ +I A C G + +A L
Sbjct: 862 VAKGIEPDKMTYYVMIDAYCREGNVMEACKL 892
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKN----------DGLKPDV 51
C EA+++ M + P TYT +L Y + N+ G++PD
Sbjct: 811 CKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDK 870
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TY ++D +C+ G E +L +E + +G+
Sbjct: 871 MTYYVMIDAYCREGNVMEACKLKDEILVKGM 901
>gi|194705728|gb|ACF86948.1| unknown [Zea mays]
gi|414591270|tpg|DAA41841.1| TPA: fertility restorer [Zea mays]
Length = 563
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 30/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILE------------AYEMLMNVKNDGLKPDVYTYTAV 57
EAR V D M G PN +++ IL AY+ + ++ GL PDV T++ +
Sbjct: 113 EARSVFDGMLAAGVAPNASSFNILVKLYAWRTADFHLAYDQIHAMRRHGLLPDVGTFSTL 172
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ G C+ G+ +E +L+ ++ G P ++H T+ ++Q C
Sbjct: 173 VTGLCRAGKLDEAWGVLDWMLQEGCRP----MVH--------------TYTPIVQGYCRQ 214
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+I++A L+ M + G P+ Y+ LI+ L
Sbjct: 215 GQIEEATNLIGFMEDAGCPPNAVTYNVLIRAL 246
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 29/169 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA +I +M D G PN TY +L E ++L ++ G +
Sbjct: 211 YCRQGQIEEATNLIGFMEDAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETKGHELS 270
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
TY MD K G + E ++ +G+ P TL + N +
Sbjct: 271 TVTYNIYMDALGKKGMAKEALKQFEALQCKGLHPTAFTLSIILNCLCCTSRFSQAISILE 330
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-SRTL 141
D+ + +N V+ LC +G+ L LL M + IP +RTL
Sbjct: 331 RSTDLNFCAAVVAYNTVMSRLCDMGRWPAVLELLADMIKKCIIPNTRTL 379
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------- 89
+++++ + G+ P V Y +++ + GR+ E + + + GV PN +
Sbjct: 81 DLMLSTSSAGVPPSVLCYNTLLNALVEAGRAVEARSVFDGMLAAGVAPNASSFNILVKLY 140
Query: 90 ------IHL-----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
HL H + G +P TF+ ++ LC GK+D+A +L M + G P
Sbjct: 141 AWRTADFHLAYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPM 200
Query: 139 RTLYDTLIKKLDQQ 152
Y +++ +Q
Sbjct: 201 VHTYTPIVQGYCRQ 214
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 28/146 (19%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
DF A I M +G P+V T++ L EA+ +L + +G +P V+TYT
Sbjct: 146 DFHLAYDQIHAMRRHGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYT 205
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDI 98
++ G+C+ G+ E L+ + G PN VT LI L +
Sbjct: 206 PIVQGYCRQGQIEEATNLIGFMEDAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETK 265
Query: 99 GHIPRTITFNNVIQALCGVGKIDKAL 124
GH T+T+N + AL G +AL
Sbjct: 266 GHELSTVTYNIYMDALGKKGMAKEAL 291
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C EA V+D+M G P V TYT I EA ++ +++ G P+
Sbjct: 177 CRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQGYCRQGQIEEATNLIGFMEDAGCPPNA 236
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY ++ C R EV ++L E +G + VT L
Sbjct: 237 VTYNVLIRALCDDARFAEVEQVLAEIETKGHELSTVTYNIYMDALGKKGMAKEALKQFEA 296
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T + ++ LC + +A+ +L + + Y+T++ +L
Sbjct: 297 LQCKGLHPTAFTLSIILNCLCCTSRFSQAISILERSTDLNFCAAVVAYNTVMSRL 351
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 26/169 (15%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K + + G HP T +I+ +A +L + V Y VM
Sbjct: 289 EALKQFEALQCKGLHPTAFTLSIILNCLCCTSRFSQAISILERSTDLNFCAAVVAYNTVM 348
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN-------------VIDIGHIPRT 104
C +GR V+ELL + I++ + PN TL I +H+ V + G
Sbjct: 349 SRLCDMGRWPAVLELLADMIKKCIIPNTRTLNIFIHSLCIADKLSVAMKLVCNQGFPANA 408
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKLDQQ 152
+T+N +I + G+ +A + M E I P Y ++ L +Q
Sbjct: 409 VTYNTLIHSFYLRGEAYEADNMFAYMTEVANIAPDEVTYTIMVDGLCRQ 457
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 39/186 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA K+ D M G P TY+ L +A ++ ++ +GL P+
Sbjct: 708 YCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPN 767
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLH 93
V YTA++ G+CK+G+ ++V+ +L E + PN +T LH
Sbjct: 768 VVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLH 827
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLL----------LFLMYEHGKIPSRTLYD 143
++ G +P T+T+N + C GKI++ LL LFL++E + +R + D
Sbjct: 828 EMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAEDGVGFNSPLFLIHEAFRACTRRV-D 886
Query: 144 TLIKKL 149
KK
Sbjct: 887 LWAKKF 892
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E K+ M G P+ TY +L EA + K+ L P+V
Sbjct: 604 CKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNV 663
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH----NVIDI------ 98
YTY ++DG+CK + E +L E + + + N V TLI + N ++
Sbjct: 664 YTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDD 723
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P T T++++I +C +G+++ A L+ M + G +P+ Y LI
Sbjct: 724 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALI 775
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + + M +G + + TY++L EA +L G P+
Sbjct: 359 CKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNE 418
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++DG+CK+G + + + + + +G+ PN VTL N++I
Sbjct: 419 VVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTL------------------NSII 460
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
Q C +G++++A +L M G + + T+I L
Sbjct: 461 QGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWL 498
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAV 57
F A V ++ + G P V T T L E + G+ PDVY ++
Sbjct: 260 FRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTA 319
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
++ FCK G+ + ++L + + GV+PNVV T+NN+I LC
Sbjct: 320 INAFCKGGKVEDAIQLFFDMEKLGVSPNVV------------------TYNNLIHGLCKH 361
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +D+A M + G + Y LI L
Sbjct: 362 GNLDEAFRFKEKMVKDGVNATLITYSVLINGL 393
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A +++ M G+ N +T + A L + ++P+
Sbjct: 463 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 522
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
T ++ G CK G+ ++ +EL +E+G N+VT LIH L
Sbjct: 523 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 582
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G + IT+N +I C GK+++ L M + G P Y+ LI
Sbjct: 583 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 635
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ + + G+ N+ T L EA +L + G D
Sbjct: 534 CKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK 593
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ G CK G+ E +L E +++G+ P+ T T+N +I
Sbjct: 594 ITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD------------------TFTYNLLI 635
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+C +GK+D+A+ L +P+ Y +I
Sbjct: 636 HGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 670
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAY----------EMLMNVKNDGLKPD 50
YC + +A ++ M G +PN VT +I++ + +L + + G +
Sbjct: 428 YCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSIN 487
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LH 93
+T ++ C R + L E + R + PN + TL+
Sbjct: 488 PGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWF 547
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G +T N +I LC G + +A+ LL M E G + + Y+TLI
Sbjct: 548 RLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLIS 601
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C +A ++++ M G+ PNV T+T L +A+ + + V++D KP+
Sbjct: 309 CKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPN 368
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVID 97
VYTYT +++G+CK + N LL E+G+ PN T L + ++D
Sbjct: 369 VYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMD 428
Query: 98 I----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P T+N +I LC G+ +A LL + G + Y LI + +Q
Sbjct: 429 LMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQ 487
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 28/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K F EA K++ +G H + TYTIL +A + + GL+PD+
Sbjct: 450 CKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDM 509
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+TY ++ FC+ + E +L EA+ G+ P T + H
Sbjct: 510 HTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHK 569
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ D G P +IT+ +I LC K+D+A L M ++G P TL
Sbjct: 570 MRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTL 620
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A ++ M + G PN TYT L AYE++ + +G P+
Sbjct: 379 YCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPN 438
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
++TY A++DG CK GR E +LL ++ G+ + VT L
Sbjct: 439 IFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFS 498
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +G P T+N +I C K++++ L G +P++ Y ++I
Sbjct: 499 RMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMI 551
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + + M + GY + T T++ A+ GL P+
Sbjct: 238 YCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPN 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHL 92
+ ++++++G CK+G + E+L E + +G PNV T + L
Sbjct: 298 LINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFL 357
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V + P T+ +I C K+++A +LL M E G +P+ Y LI
Sbjct: 358 KLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLI 411
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIH 91
PD +Y ++ G+C++GR ++V L + IERG + T +
Sbjct: 226 PDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWY 285
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ +G P I F+++I LC +G I +A +L M G P+ + LI L +
Sbjct: 286 FKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCK 345
Query: 152 Q 152
+
Sbjct: 346 K 346
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + E+ K+ + G P TYT I A + +++ G KPD
Sbjct: 519 FCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPD 578
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH-----------NVIDIG 99
TY A++ G C + +E +L I+ G++P VT + L +I +
Sbjct: 579 SITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILE 638
Query: 100 HIPRTI---TFNNVIQALCGVGKIDKALLLL 127
+ + + T N +I+ LC K+ A L
Sbjct: 639 RLEKKLWIRTVNTLIRKLCSEKKVGVAALFF 669
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKND----------GLKPD 50
YC D A ++ D M +G PN T+ +L + + + N+++ G PD
Sbjct: 295 YCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-----------IG 99
V T+T+++DG+C+ G N+ ++L E R ++PNV T L N + +
Sbjct: 355 VVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLR 414
Query: 100 H------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H +P+ +N VI C GK+D+A ++ M E P + + LI
Sbjct: 415 HLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILI 467
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------- 88
G+ PDV TYT+++ G+CK+G EL +E + G+ PN T
Sbjct: 280 GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSA 339
Query: 89 LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ ++ +G +P +TF ++I C G++++ L L M P+ Y LI
Sbjct: 340 MVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINA 399
Query: 149 L 149
L
Sbjct: 400 L 400
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + + K+ + M PNV TY +L EA L ++K+ + P
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPK 424
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ Y V+DGFCK G+ +E ++ E E+ P+ +T L +
Sbjct: 425 PFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFY 484
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+I+I +P IT N++I L G ++A
Sbjct: 485 KMIEINCVPDEITINSLISCLLKAGMPNEA 514
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTP----NVVTLIHLHNV 95
+++DG+ PD ++ + ++G+ + LNE G V+P N++ ++ N+
Sbjct: 135 MRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNL 194
Query: 96 IDIG-----------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
+D +P +FN +I+ LC +G+IDKA M G P Y+T
Sbjct: 195 VDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNT 254
Query: 145 LI 146
LI
Sbjct: 255 LI 256
Score = 42.7 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH---NVIDIGH-- 100
PDVY++ ++ G C++G ++ E G P++V TLI+ N I GH
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271
Query: 101 ----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+ ++I C +G + A L M G P+ ++ LI
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLI 327
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKND----------GLKPD 50
YC D A ++ D M +G PN T+ +L + + + N+++ G PD
Sbjct: 295 YCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-----------IG 99
V T+T+++DG+C+ G N+ ++L E R ++PNV T L N + +
Sbjct: 355 VVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLR 414
Query: 100 H------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H +P+ +N VI C GK+D+A ++ M E P + + LI
Sbjct: 415 HLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILI 467
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------- 88
G+ PDV TYT+++ G+CK+G EL +E + G+ PN T
Sbjct: 280 GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSA 339
Query: 89 LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ ++ +G +P +TF ++I C G++++ L L M P+ Y LI
Sbjct: 340 MVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINA 399
Query: 149 L 149
L
Sbjct: 400 L 400
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + + K+ + M PNV TY +L EA L ++K+ + P
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPK 424
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ Y V+DGFCK G+ +E ++ E E+ P+ +T L +
Sbjct: 425 PFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFY 484
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+I+I +P IT N++I L G ++A
Sbjct: 485 KMIEINCVPDEITINSLISCLLKAGMPNEA 514
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTP----NVVTLIHLHNV 95
+++DG+ PD ++ + ++G+ + LNE G V+P N++ ++ N+
Sbjct: 135 MRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNL 194
Query: 96 IDIG-----------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
+D +P +FN +I+ LC +G+IDKA M G P Y+T
Sbjct: 195 VDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNT 254
Query: 145 LI 146
LI
Sbjct: 255 LI 256
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH---NVIDIGH-- 100
PDVY++ ++ G C++G ++ E G P++V TLI+ N I GH
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271
Query: 101 ----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT+ ++I C +G + A L M G P+ ++ LI
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLI 327
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EAR++ D + + G NV Y++L EA + + + P+
Sbjct: 373 CKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNA 432
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IH--LHN 94
YT+ A++ G C G E + L ++ ++ G+ P V T H L
Sbjct: 433 YTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQK 492
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G P T+N I+ C GK+ +A ++ M E G P Y +LIK
Sbjct: 493 MMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIK 545
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 2 YCNKNDFFEARKVIDYM-------FDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTY 54
YC D A +V + M ++ H I EA + + +K+D P+VYTY
Sbjct: 237 YCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTY 296
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
TA++ G C+ ++ M LL+E +ER + P++ IT+N++I
Sbjct: 297 TALIKGLCR-KNVHKAMGLLDEMLERNLVPDL------------------ITYNSLIAGQ 337
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G +D A LL LM E G +P + Y I L
Sbjct: 338 CRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFL 372
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C KN +A ++D M + P++ TY L AY +L +K GL PD
Sbjct: 304 CRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQ 362
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
TY +D CK R E L + E GV+ NV+ + + +G +
Sbjct: 363 RTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEK 422
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P TFN +I LC G + +AL L M + G P+ ++ LI ++ +Q
Sbjct: 423 MLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQ 480
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHLHNVIDIGHIPRT- 104
D+YT+ +++ +CK+G E + + + I+ G++P+ T ++ D+ R
Sbjct: 191 DIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVF 250
Query: 105 --------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++N +I LC G+ID+A+ L M + P+ Y LIK L
Sbjct: 251 EEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGL 303
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 38/172 (22%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYT 53
+ DF +A K + M +G P TY + EA +M++ +K +G+ PD +T
Sbjct: 480 QGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFT 539
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------------HN 94
YT+++ + K+G + ++L + P+ T + L +
Sbjct: 540 YTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVES 599
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V + G +P + N+ + + + D + L M +HG P Y+ LI
Sbjct: 600 VSNFGDVPGS----NMWKMM----EFDIVIELFEEMEKHGCTPDSKCYEKLI 643
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA ++++ + G P+V +Y L EA L + N G++P+
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY +++GFCK G ++L +A+ +G IP T++++I
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGF------------------IPDEFTYSSLI 363
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G +++A+ + + E G S LY+TL+K L +Q
Sbjct: 364 NGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQ 404
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN D A V + G+ ++ Y +L+A +++ ++ G PD+
Sbjct: 367 CNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDI 426
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY V++G CK+G ++ +LN+AI +G P++ TFN +I
Sbjct: 427 WTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDI------------------FTFNTLI 468
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C +DKA+ +L M HG P Y+TL+ L
Sbjct: 469 DGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGL 506
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + D M G P++ T+ L E+ ++ V G+ P+++T+ +
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HLHNVIDIGHI 101
G C+ G +E LL + G+TP+V+ TLI +LH +++ G
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N +I C G + A +L G IP Y +LI L
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGL 366
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 81/208 (38%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA V + M P+V +Y + +A+++ M +K+ G+ PD
Sbjct: 86 YGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPD 145
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLN----------------------------------- 75
VYT+T M FC GR + LLN
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205
Query: 76 EAIERGVTPNVVT---LIHL--------------HNVIDIGHIPRTITFNNVIQALCGVG 118
E +++G+ P+++T LIH+ V+ G P TFN IQ LC G
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
ID+A LL + G P Y+TLI
Sbjct: 266 AIDEAARLLESIVSEGLTPDVISYNTLI 293
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 30/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + +A +++D M +G P+V TY L + + G P+
Sbjct: 471 YCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPN 530
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY +++ FCK + +E MEL E RG+TP++VTL L
Sbjct: 531 IITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL------------------ 572
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLI 146
I LC G++DKA L + + K S +++ +I
Sbjct: 573 ICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMI 609
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +++ G P++ T+ L +A E+L + + G+ PDV
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDV 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++G CK + + V++ +E+G TPN+ IT+N +I
Sbjct: 497 ITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNI------------------ITYNILI 538
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ C K+ +A+ L M G P TLI
Sbjct: 539 ESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 63/172 (36%), Gaps = 39/172 (22%)
Query: 6 NDFFEARK---VID---YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
N +ARK V+D M + G PN+ TY IL EA E+ +K GL
Sbjct: 504 NGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLT 563
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMEL--------------------LNEAIERGVTPNVVT 88
PD+ T ++ G C G ++ EL +N E+
Sbjct: 564 PDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEK 623
Query: 89 LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
L H D P T+ +I + C G ID A L G +PS T
Sbjct: 624 LFHKMGGSDCA--PDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFT 673
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD YTY ++D +CK G + L E I +G+ P+ T
Sbjct: 635 PDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTC------------------G 676
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
V+ LC ++ +A++++ LM ++G +P
Sbjct: 677 KVLNCLCVTHRLSEAVVIINLMVQNGIVPEE 707
>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 811
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y D A V M G PNV TYTIL EA+ M + G++P
Sbjct: 366 YVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPS 425
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------IHLH----NV 95
+ TY++++DGFCK G L + I+ G P+VV + LH +V
Sbjct: 426 IVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSV 485
Query: 96 IDIGHIPR--TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+G R + FN++I C + + D+AL + LM +G P + T+++
Sbjct: 486 KMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMR 539
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C ND A ++ M + G PN TY L ++++ ++ G+ P +
Sbjct: 653 CKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSI 712
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y+ ++DG CK GR +E + ++AI+ + P+VV + +I
Sbjct: 713 VSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVV------------------AYAILI 754
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ C VG++ +A LL M +G P L L
Sbjct: 755 RGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 788
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ + D G PNV T+ L A+++ ++ G++PD+ Y+ ++D
Sbjct: 270 ASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLID 329
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI--------------------G 99
G+ K G +L ++A+ +GV +VV + ID+ G
Sbjct: 330 GYFKAGMLGMGHKLFSQALHKGVKLDVVV---FSSTIDVYVKSGDLATASVVYKRMLCQG 386
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I+ LC G+I +A + + + G PS Y +LI
Sbjct: 387 ISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++ + + + PN T TIL A M + G KP+
Sbjct: 617 YCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPN 676
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +MD F K +L E E+G++P++V+ ++ +
Sbjct: 677 AVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVS------------------YSII 718
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I LC G++D+A + + +P Y LI+
Sbjct: 719 IDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIR 755
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 38/181 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKP------------ 49
+C N F EA KV M G P+V T+T + ++ + +KP
Sbjct: 506 WCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQR 565
Query: 50 -----DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---------------- 88
D+ V+ K R + + N IE + P++VT
Sbjct: 566 NKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDE 625
Query: 89 ---LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ L V G P T+T +I LC +D A+ + +M E G P+ Y L
Sbjct: 626 AERIFELLKVTPFG--PNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCL 683
Query: 146 I 146
+
Sbjct: 684 M 684
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 46 GLKPD-VYTYTAVMDG-FCKVGRSNEVMELLNEAIERGVTPNVVT--------------- 88
G++P V + V+D FCK G + ++ +ERG +V+
Sbjct: 211 GIEPSGVSAHGFVLDALFCK-GEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQIEV 269
Query: 89 ---LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
L+ L V+D G P +TF +I C G++D+A L +M + G P Y TL
Sbjct: 270 ASRLLSL--VLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTL 327
Query: 146 I 146
I
Sbjct: 328 I 328
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
CN + +A ++ M P++ T+ ++A E+ + G P+
Sbjct: 373 CNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNS 432
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---------------VTLIHL-HNV 95
TY++V++G K G+ + +ELLNE +G P + V I + H +
Sbjct: 433 VTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHKL 492
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D G P+ + +N ++ LC GK D+A+ +L M G +P + Y LI+ L +
Sbjct: 493 QDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHE 549
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 36/182 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++D M G P+V TY IL +A E++ ++ +G P
Sbjct: 163 CVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTN 222
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------DIGH 100
TY +MDG C+ G + ELLN G TPN V +N + D+
Sbjct: 223 VTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVN----YNTVLKGLRTAGRWEDVEE 278
Query: 101 I----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ P T + VI +LC G +A+ LL M +H + Y+ ++ L
Sbjct: 279 LIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLC 338
Query: 151 QQ 152
+Q
Sbjct: 339 EQ 340
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C + +A ++ID M G P TY ++ A E+L ++ + G P+
Sbjct: 198 CKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNT 257
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI----- 105
Y V+ G GR +V EL+ E P+ TL + + ++ G R I
Sbjct: 258 VNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEK 317
Query: 106 -----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N V+ LC G +D AL LL M G P+ Y+ L+K L
Sbjct: 318 MSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGL 372
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 2 YCNKNDFFEARKVID--------YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYT 53
YC EAR+V+D Y ++ H + +A +L N+ G PDV T
Sbjct: 130 YCRVGRLDEARRVVDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVT 189
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113
Y +++ CK + MEL++ G TP +T+N ++
Sbjct: 190 YNILLEAACKGRGYRQAMELIDLMRVEGCTPT------------------NVTYNVIMDG 231
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+C G +D A LL + +G P+ Y+T++K L
Sbjct: 232 MCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGL 267
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 28/163 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F A ++++ M + N+ TY + A +L N++ DG KP++
Sbjct: 303 CQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNI 362
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
+TY ++ G C R + +L+ + + P+++T +
Sbjct: 363 FTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQ 422
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ + G P ++T+++VI+ L GK++++L LL M G P
Sbjct: 423 MPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNP 465
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + D AR++++ + G PN Y T+L+ E++ + ++ P
Sbjct: 233 CREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSE 292
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
T + V+ C+ G + LL + + T N+VT L L N
Sbjct: 293 ATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSN 352
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G P T+N +++ LC + + A L+ M + +P ++T+I L Q+
Sbjct: 353 MQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQK 410
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKP 49
C ++ EA +++ + D G P Y TIL +A ++L N+ +DG P
Sbjct: 475 CLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMP 534
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
D TY+ ++ G G E ELL+ R V
Sbjct: 535 DESTYSILIQGLAHEGYMKEARELLSTLSSRDV 567
>gi|357499035|ref|XP_003619806.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355494821|gb|AES76024.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 302
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +ID M D G ++ YT L +A +L +K+ G++PD+
Sbjct: 41 CKSGKISDVWDLIDDMHDRGQQADIIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDM 100
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT ++DG CK GR + E+ + + +G N +HNV+ I
Sbjct: 101 FTYTMLVDGLCKNGRLKDAQEVYRDLMVKGYHFNAC----MHNVM--------------I 142
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G D+AL +L M ++G P Y TLI+ L
Sbjct: 143 NGLCKEGLFDEALFVLSEMEDNGCTPDVVTYKTLIRAL 180
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A++V + GYH N + ++ EA +L ++++G PDV
Sbjct: 111 CKNGRLKDAQEVYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALFVLSEMEDNGCTPDV 170
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
TY ++ K +++ ++LL E + RG+
Sbjct: 171 VTYKTLIRALFKNDMNDKAVKLLREMLSRGL 201
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 38/169 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ A K++++M NG +PNV Y+ L EA E+ +K+ GLKPD
Sbjct: 282 FCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPD 341
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN- 109
YT +++ FC+ GR +E MELL + E + VT NVI +G + R F
Sbjct: 342 TVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTF----NVI-LGGLCREGRFEEA 396
Query: 110 ---------------------VIQALCGVGKIDKALLLLFLMYEHGKIP 137
V+ +LC G++ KA L+ LM G +P
Sbjct: 397 RGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLP 445
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 36/165 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMN-VKNDGLK 48
+C D A +V++ M + +PN+ TY+ L EA E+ V D +
Sbjct: 210 HCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQIL 269
Query: 49 PDVYTYTAVMDGFC---KVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
PD TY A+++GFC KV R+ ++ME + + G PNV L N
Sbjct: 270 PDALTYNALINGFCHGEKVDRALKIMEFMK---KNGCNPNVFNYSALMNGFCKEGRLEEA 326
Query: 95 --VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
V D +G P T+ + +I C G++D+A+ LL M E+
Sbjct: 327 KEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMREN 371
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 29/135 (21%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEVM 71
PN + IL A+E++ +K + P++ TY+ +++G C GR E +
Sbjct: 197 EPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAI 256
Query: 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131
EL E + + +P +T+N +I C K+D+AL ++ M
Sbjct: 257 ELFEEMVSKDQI-----------------LPDALTYNALINGFCHGEKVDRALKIMEFMK 299
Query: 132 EHGKIPSRTLYDTLI 146
++G P+ Y L+
Sbjct: 300 KNGCNPNVFNYSALM 314
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 64/192 (33%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA++V D M G P+ YT L EA E+L +++ + + D
Sbjct: 317 FCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRAD 376
Query: 51 VYTYTAVMDGFCKVGRSNEVMELL----------NEA----------------------- 77
T+ ++ G C+ GR E +L N+A
Sbjct: 377 TVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVG 436
Query: 78 --IERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ RGV P+ T N ++ LC GK+ A++ L + E G
Sbjct: 437 LMLGRGVLPHFA------------------TSNELLVHLCEAGKVGDAVMALLGLLELGF 478
Query: 136 IPSRTLYDTLIK 147
P + L++
Sbjct: 479 KPEPNSWALLVE 490
>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
Length = 551
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN+ D EAR++ M NG P++ TY ++ EA ++ GL PD
Sbjct: 398 HCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPD 457
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y+Y A++ G C G+ + + L E +RG PN+V + +
Sbjct: 458 IYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLV------------------AYTAL 499
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ ++A L M G P LY L+ L
Sbjct: 500 ISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D +++ M + G P V TYTIL + + +K+ L D
Sbjct: 188 YTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGD 247
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIP------- 102
VY Y++V++ +C+ G E+ +E + G+ PN T L N IG +
Sbjct: 248 VYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVT 307
Query: 103 ---------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
I FN +I C +DKAL + +M + G Y+TL
Sbjct: 308 DMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTL 359
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 59/249 (23%), Positives = 81/249 (32%), Gaps = 98/249 (39%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEML------------ 39
YC + A +V D NG PN TY L EA EML
Sbjct: 258 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 317
Query: 40 ------------------------MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
M ++ G++ DVYTY + G + R +E LL
Sbjct: 318 QIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR 377
Query: 76 EAIERGVTPNVV---TLIHLH----------------------------NVIDIGHI--- 101
IE+GV PN V TLI +H NV+ G+I
Sbjct: 378 IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKG 437
Query: 102 ------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
P ++ ++ C GK+D AL L M + G P+ Y
Sbjct: 438 SIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYT 497
Query: 144 TLIKKLDQQ 152
LI L ++
Sbjct: 498 ALISGLAKE 506
>gi|125539212|gb|EAY85607.1| hypothetical protein OsI_06979 [Oryza sativa Indica Group]
Length = 538
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA+ ++ M G PNV TY +L E ++LM KP
Sbjct: 206 YCRDGRIVEAKLLMAEMERLGCLPNVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPS 265
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVID-IGHIP 102
TY M+G CK G++ E +ELL+ + G+ P T L H ++D I +
Sbjct: 266 TVTYNIYMNGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLE 325
Query: 103 RT---------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
R+ + +N V+ +LC +GK + LL M + G P+ ++ LI+ L
Sbjct: 326 RSTELKWYAGVVAYNTVMSSLCEMGKWRGIMKLLTDMIKKGIEPNTRTFNILIRSL 381
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K D M +G PN ++ IL A+E+ + G++PDV TY+ ++
Sbjct: 112 EALKAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWEL---IHKSGVEPDVGTYSTLI 168
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G C+ G+ E +L+ +E+ P V T+ ++QA C G
Sbjct: 169 AGLCRAGKVVEAWGVLDWMLEKNCRPMVQ------------------TYTPIVQAYCRDG 210
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I +A LL+ M G +P+ Y+ LI+ L
Sbjct: 211 RIVEAKLLMAEMERLGCLPNVVTYNVLIRAL 241
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 36/161 (22%)
Query: 21 NGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G P+V TY+ ++EA+ +L + +P V TYT ++ +C+ GR E
Sbjct: 155 SGVEPDVGTYSTLIAGLCRAGKVVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVE 214
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVI-----------DIGHI----------PRTITFN 108
L+ E G PNVVT +NV+ ++ + P T+T+N
Sbjct: 215 AKLLMAEMERLGCLPNVVT----YNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYN 270
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC GK +AL LL +M G P+ + L+ L
Sbjct: 271 IYMNGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCL 311
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 45/161 (27%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA +++D M G P T++IL +A +L V
Sbjct: 277 CKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGV 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y VM C++G+ +M+LL + I++G+ PN T TFN +I
Sbjct: 337 VAYNTVMSSLCEMGKWRGIMKLLTDMIKKGIEPN------------------TRTFNILI 378
Query: 112 QALCGVGK--IDKAL--------------LLLFLMYEHGKI 136
++LC GK + K+L +LL Y HGK+
Sbjct: 379 RSLCVGGKSSLAKSLIHSQGFAANVVTYNILLHWFYYHGKL 419
Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH---NVIDI- 98
G P+V Y +++ + GR E ++ +E + GV PN + LI +H + D+
Sbjct: 89 GAPPNVLCYNTLVNALAEAGREGEALKAFDEMLASGVAPNASSQNILIKMHARRSEFDLA 148
Query: 99 -------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P T++ +I LC GK+ +A +L M E P Y +++
Sbjct: 149 WELIHKSGVEPDVGTYSTLIAGLCRAGKVVEAWGVLDWMLEKNCRPMVQTYTPIVQ 204
Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G+ NV TY IL EA ++ ++ + PD TYT ++DG C+ + +
Sbjct: 398 GFAANVVTYNILLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIIIDGLCRERKFDAA 457
Query: 71 MELLNEAIERGVTPNVVT-----LIHLHNVIDIGHI-------PRTITFNNVIQALCGVG 118
+++ G++ +V+T L++ + +I I P F+ I+ C G
Sbjct: 458 TACFLKSLTSGLSMDVLTVLLNRLVYADKIWEINRIFDGKDFVPDHHVFDLTIRTFCRAG 517
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 29/143 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN EA+ +++ M + G PN YT + EA +L + + G +P++
Sbjct: 450 CNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNI 509
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY A++DG CK G +E + N+ ++ G+ PNV + ++
Sbjct: 510 VTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQ------------------AYTALV 551
Query: 112 QALCGVGKIDKALLLLFLMYEHG 134
LC G++DKA+LLL M + G
Sbjct: 552 DGLCKNGRLDKAVLLLDEMIDKG 574
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 28/167 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M D+G+ PN+ TY +I EA + + GL+P+V YTA++
Sbjct: 492 EAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALV 551
Query: 59 DGFCKVGRSNEVMELLNEAIERGVT-PNVV--TLIHLH--------------NVIDIGHI 101
DG CK GR ++ + LL+E I++G++ NVV +L+ H +I+ G
Sbjct: 552 DGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQ 611
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+ + C + I +A +L M E+G P +Y+ LI K
Sbjct: 612 LDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINK 658
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C+C A M G NV T++ + EA ++ ++ G+KP
Sbjct: 273 CFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKP 332
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ TYT ++DG CK GR ++ + L NE +++GV NVV T+
Sbjct: 333 NEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVV------------------TYTV 374
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC GK+ +A + LM G + LY TLI
Sbjct: 375 LVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLI 411
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D EAR ++ M G P+V TY L E +++ ++ G +PDV
Sbjct: 205 CKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDV 264
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNV 95
TY A+++ FCK GR E GV NVVT + L
Sbjct: 265 VTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQ 324
Query: 96 IDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P +T+ ++ C G++D AL+L M + G + Y L+ L
Sbjct: 325 MRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGL 379
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V M G N YT L A +L +K+ G++ DV
Sbjct: 380 CKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDV 439
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
Y A++ G C + + +E LLN+ E G+ PN V + L
Sbjct: 440 SLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQK 499
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P +T+ ++ LC G ID+A+ M + G P+ Y L+ L
Sbjct: 500 MMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGL 554
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH-PNVTTYTILE----------AYEMLMNVKNDGLKPDV 51
C +A ++D M D G NV ++++ A+ + + N GL+ D+
Sbjct: 555 CKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDL 614
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPRTITFNNV 110
Y YT + GFC + E E+L+E IE G+TP+ V L N +G++ N
Sbjct: 615 YGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNE 674
Query: 111 IQALCGVGKIDKA 123
+++L D A
Sbjct: 675 MESLLSCTNADAA 687
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A + D M + G P+ T+T L +A + + +KPD+
Sbjct: 406 CKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDI 465
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TY ++DGFCK + EL NE I R + PN ++ L N
Sbjct: 466 VTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDE 525
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G P +T N VI+ C G + KA L M G P Y+TLI
Sbjct: 526 MIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLI 577
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ + M PN +Y IL EA+ + + G+KP
Sbjct: 475 FCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPT 534
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
+ T V+ G+C+ G ++ E L + I GV P+ +T L N G
Sbjct: 535 LVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLIN 594
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N ++ C G++ +A L+L M E G P R+ Y TLI
Sbjct: 595 KMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLI 647
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N+F EA+ + M G P++ +++ L +A ++K GL PD
Sbjct: 301 CRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDN 360
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
YT +++G+C+ G +E +E+ ++ +E+G +VV + N
Sbjct: 361 VIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDE 420
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G +P TF +I C G + KAL L +M + P Y+ LI
Sbjct: 421 MVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILI 472
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D +A + + M G P+ TY L +A+ ++ ++ GL+PD
Sbjct: 545 YCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPD 604
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
V TY +++GFC+ GR E +L + IERG+ P+ T L N
Sbjct: 605 VVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLIN 648
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G ++ TY L EA+E++ ++ GLKP ++TY AV++G CK GR
Sbjct: 211 MEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGR 270
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNN 109
+ NE + G++P+ T L +++ G P I+F++
Sbjct: 271 YVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSS 330
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I G +D+AL+ M G +P +Y LI
Sbjct: 331 LIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILI 367
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + +A + M P++ TY IL +A E+ + + + P+
Sbjct: 440 HCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPN 499
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
+Y +++G+C +G +E L +E I +G+ P +VT L
Sbjct: 500 HISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLG 559
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P +IT+N +I +DKA L+ M G P Y+ ++ +Q
Sbjct: 560 KMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQ 618
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH 91
A+E+ + G++ +VYT +++ CK + ++V L + ++G+ ++V TLI+
Sbjct: 169 AWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLIN 228
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++++ G P T+N VI LC G+ +A + M G P
Sbjct: 229 AYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSP 288
Query: 138 SRTLYDTLI 146
T Y+TL+
Sbjct: 289 DTTTYNTLL 297
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+I+ M G P+V TY ++ EA +L + G+ PD TYT +++G+
Sbjct: 592 LINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYV 651
Query: 63 KVGRSNEVMELLNEAIERGVTPN 85
E +E ++RG P+
Sbjct: 652 SQDNLKEAFRFHDEMLQRGFVPD 674
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K++ A KV M DNG+ PN T+TIL A+ + +K+ + P
Sbjct: 412 HCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPT 471
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
T ++ G CK GRS E +L N+ + +G P + T+I
Sbjct: 472 DTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYR 531
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++G P T+T+ ++I C ID AL LL M G Y TLI
Sbjct: 532 EMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLI 584
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 62/210 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + A +++ + ++G PN TY++L +A+E +K G++
Sbjct: 273 YCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSS 332
Query: 51 VYTYTAVMDGF----------------------------------CKVGRSNEVMELLNE 76
VY+ ++++G+ CK G+ NE L +E
Sbjct: 333 VYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDE 392
Query: 77 AIERGVTPNVVT-----LIHLHN------------VIDIGHIPRTITFNNVIQALCGVGK 119
I +G++PNVV+ L H ++D G P +TF ++ G
Sbjct: 393 VIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGD 452
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ A + M + +P+ T +IK L
Sbjct: 453 IENAFSIFHRMKDANILPTDTTLGIIIKGL 482
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A ++++ + G PN Y + EA ++ + N+G+ D
Sbjct: 587 FCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCD 646
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TYT+++DG K GR ++ E + +G+ P+ D H +
Sbjct: 647 LKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPD-----------DRAHTV-------L 688
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G+ + A +L M IPS +Y+TLI
Sbjct: 689 INGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI 724
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V M + G P+ TYT L A ++L ++K GLK D+ Y ++D
Sbjct: 526 ASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLID 585
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPN 85
GFCK ELLNE G++PN
Sbjct: 586 GFCKRRDMKSAHELLNELRGAGLSPN 611
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 29/165 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKN----------DGLKPDVYTYTAVM 58
EA ++ D M + G N+ T +++ Y M N+++ GL P+ TY+ ++
Sbjct: 246 EALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLI 305
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHI 101
DG CK G + E +E +G+ +V +L ++ ++ G +
Sbjct: 306 DGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESG-L 364
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN ++ LC GK+++A L + G P+ Y+ +I
Sbjct: 365 ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNII 409
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 11 ARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M G+ P T+T + EA + ++ N G ++ T++M
Sbjct: 212 ALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMK 271
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTITF 107
G+C G + L+NE E G+ PN VT + + G+I + F
Sbjct: 272 GYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEF 320
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 29/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K EA+ D + D + P+V YT I EA + +K G P+V
Sbjct: 223 CRKRRATEAQSFFDSLKDK-FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNV 281
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
YTYT V+D C+ G+ ++ E ++ G PN +T L+ +H
Sbjct: 282 YTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQ 341
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ +G P T+T+N +I++ C G +D+AL +L M + G P+ + ++ L
Sbjct: 342 MKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGL 392
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA KV++ M G PN +T+ L A+ + +K K +
Sbjct: 361 HCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKAN 420
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +M F ++ V++L E E V PNV T L
Sbjct: 421 TVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVL------------------ 462
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
I CG+G + A M E + PS +Y+ ++++L
Sbjct: 463 IAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQL 502
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EAR V+D M G N Y L +A M ++ + G KPD
Sbjct: 434 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 493
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
++T+ +++ G CKV + E + L + + GV N +T LIH ++
Sbjct: 494 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 553
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G IT+N +I+ALC G I+K L L M G P+ + LI L
Sbjct: 554 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 609
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVI-DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
Y ++ EA+ V+ + M G P++ TY L A E++ ++ G +P
Sbjct: 363 YVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEP 422
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHL 92
+V TYT ++D FCK GR E +L+E +G+ N V L
Sbjct: 423 NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 482
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P TFN++I LC V K ++AL L M G I + Y+TLI
Sbjct: 483 GDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 536
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 33/165 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + + M G +PN + IL A E L ++ + GL PD+
Sbjct: 575 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 634
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++++G CK GR+ E + L ++ G+ P+ IT+N +I
Sbjct: 635 VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD------------------AITYNTLI 676
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRT----LYDTLIKKLDQQ 152
C G D A LLL + G IP+ L IK+ DQ+
Sbjct: 677 SWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 21/131 (16%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHL 92
YEML + G+ P VYT+ VM C V + LL + G PN + TLIH
Sbjct: 206 YEML----SKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHA 261
Query: 93 HNVID--------------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
+ +G IP TFN+ I LC + +I +A L+ M G P+
Sbjct: 262 LXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPN 321
Query: 139 RTLYDTLIKKL 149
Y L+ L
Sbjct: 322 SFTYGVLMHGL 332
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA- 77
F++ H I EA +++ + G P+ +TY +M G C++G+ +E LLN+
Sbjct: 290 FNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP 349
Query: 78 --------------IERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+ RG ++H +++ +G P T+N +I LC G + A
Sbjct: 350 NPNVVLFNTLINGYVSRGRLDEAKAVMH-ESMLSVGCGPDIFTYNTLILGLCKKGYLVSA 408
Query: 124 LLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
L+ M G P+ Y LI + ++
Sbjct: 409 RELMNEMQIKGCEPNVITYTILIDRFCKE 437
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 36/159 (22%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G P V T+ ++ A +L ++ G P+ Y ++ KVGR
Sbjct: 208 MLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGR 267
Query: 67 SNEVMELLNEAIERGVTPNVVT----------LIHLHNVIDI-------GHIPRTITFNN 109
NEV++LL E + G P+V T ++ +H + G P + T+
Sbjct: 268 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 327
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSR--TLYDTLI 146
++ LC +GK+D+A +LL K+P+ L++TLI
Sbjct: 328 LMHGLCRMGKVDEARMLL------NKVPNPNVVLFNTLI 360
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID 97
+LM +K +G+ + +M + + G + LL + RGV T + V+D
Sbjct: 133 LLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM--RGVYSCEPTFRSYNVVLD 190
Query: 98 I---GHIPRTI-----------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ G+ P+ + TF V++ALC V ++D A LL M HG +P
Sbjct: 191 VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVP 250
Query: 138 SRTLYDTLIKKLDQ 151
+ +Y TLI L +
Sbjct: 251 NAIVYQTLIHALXK 264
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EA M G P+V TY+ ++ A+ +L + + PDVYTYT ++
Sbjct: 290 EAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILI 349
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDIGHI------- 101
D CK G+ E LL + GV PNVVT L HN I H
Sbjct: 350 DALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVN 409
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++N +I LC +D+A+ LL M +P+ Y++LI L
Sbjct: 410 PSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGL 457
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +++ M +P+V TYTIL EA +L + +G+KP+
Sbjct: 317 FCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPN 376
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
V TY+ +MDG+C VG + ++ + ++ V P+V + + N + G
Sbjct: 377 VVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLR 436
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P T+T+N++I LC G+I AL L+ ++ G+ Y +L+ L
Sbjct: 437 EMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGL 492
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + A+++ M +P+V +Y I+ EA +L + + + P+
Sbjct: 387 YCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPN 446
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +++DG CK GR ++L+ E RG +V IT+ ++
Sbjct: 447 TVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADV------------------ITYTSL 488
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC +DKA+ L M E G P++ Y LI L
Sbjct: 489 LDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGL 527
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ + G +V TYT L +A + M +K G++P+
Sbjct: 458 CKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNK 517
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYTA++DG CK R +L + +G +V T+N +I
Sbjct: 518 YTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVY------------------TYNVMI 559
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G +D+AL + M ++G IP ++ +I+ L ++
Sbjct: 560 GGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEK 600
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C K + ++ D + G+ N +Y L A ++L +++ +PDV
Sbjct: 213 CLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDV 272
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
Y ++DG CK NE + E RG+ P+V+T L N
Sbjct: 273 VMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNE 332
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +I P T+ +I ALC GK+ +A LL +M + G P+ Y TL+
Sbjct: 333 MTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLM 384
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 40 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------- 89
M VK G++PD+ T + +++ FC +G+ +L + ++ G PN + L
Sbjct: 158 MEVK--GIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLK 215
Query: 90 ------IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
+H H+ V+ G +++ ++ LC +G+ A+ LL ++ + P +Y
Sbjct: 216 GEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMY 275
Query: 143 DTLIKKL 149
+T+I L
Sbjct: 276 NTIIDGL 282
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ + EAR++ + M G P+V Y +L EA + + N L P
Sbjct: 310 YCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPT 369
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ +Y +++DG C GR + V +LL+E P+VV T+N +
Sbjct: 370 IASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVV------------------TYNIL 411
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I ALC G+I +AL +L +M + G P+ Y+ ++
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMM 447
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 36/176 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN +K++D M + P+V TY IL EA +L+ + G+KP++
Sbjct: 381 CNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNI 440
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH----------- 100
TY A+MDG+C N ++ N ++ G+ P+++ +NV+ G+
Sbjct: 441 VTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILN----YNVLINGYCKTEMVDEAIV 496
Query: 101 ----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IP ++N++I LC +G+I LL M + G+ P Y+ L+
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILL 552
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +N+ A+ + + M +G P++ Y +L EA + +++ L PD
Sbjct: 450 YCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPD 509
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN 94
+ +Y +++DG C +GR V ELL+E + G +P+V+T I L
Sbjct: 510 IASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFR 569
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I G P T + ++ LC K+ A L + HG P+ Y LI L
Sbjct: 570 QIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINAL 624
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---- 87
ILEA +L + G KPD+ TY A+M+G+C +E EL N ++RG+ P+V+
Sbjct: 281 ILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNV 340
Query: 88 -------------TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
++ + + +P ++N++I LC G+I LL M+
Sbjct: 341 LIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSA 400
Query: 135 KIPSRTLYDTLIKKLDQQ 152
+ P Y+ LI L ++
Sbjct: 401 QPPDVVTYNILIDALCKE 418
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M + PN+ Y+ L +A + + G+ D TY +++D
Sbjct: 179 ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G C VGR EV +LL + + V P+ TFN +I ALC G+
Sbjct: 239 GCCSVGRWQEVTQLLTKMVRENVDPD------------------DYTFNILIDALCKEGR 280
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I +A +L +M + G+ P Y+ L++
Sbjct: 281 ILEAQGVLAMMSKRGEKPDIVTYNALME 308
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 28/180 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
CY +++ A ++ + +GY PN+ T+ I +A + N+ G
Sbjct: 99 CYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLF 158
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------- 92
D +TY +++G K G+ + LL E + V PN+V L
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G + +T+N++I C VG+ + LL M P ++ LI L ++
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---- 89
E ++L + + + PD YT+ ++D CK GR E +L +RG P++VT
Sbjct: 248 EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307
Query: 90 --------IH-----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+H + ++ G P + +N +I C +D+A++L + +
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLV 367
Query: 137 PSRTLYDTLIKKL 149
P+ Y++LI L
Sbjct: 368 PTIASYNSLIDGL 380
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------ 88
A + +++ G+ P + T+T +++ + + LL ++ G PN+VT
Sbjct: 74 AISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIIN 133
Query: 89 -----------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L N++ G++ T+ +I L G+I AL LL M + P
Sbjct: 134 GFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQP 193
Query: 138 SRTLYDTLIKKL 149
+ +Y LI L
Sbjct: 194 NLVMYSALIDGL 205
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P + ++ ++G + L + +G++P++ T L N
Sbjct: 53 PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ G+ P +TFN +I C G I KAL + G + + Y TLI L +
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 133 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 192
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L
Sbjct: 193 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M P + Y TLI
Sbjct: 253 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLI 305
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A +ID M P+ TYT L A+E + + ++ D
Sbjct: 274 CKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE 333
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P+ + T+ +I
Sbjct: 334 VAYTALISGLCQEGRSVDAEKMLREMLNVGLKPD------------------SRTYTMII 375
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + K LL M G +PS Y+ L+
Sbjct: 376 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 410
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 88 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 139
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 140 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 199
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 200 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 235
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +N +A V++ M + P+V TY L AY +L + + GL PD
Sbjct: 438 YCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
+TYT+++D CK R E +L + ++ V PNVV + L
Sbjct: 497 PWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLE 556
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +P ++TFN +I LC GK+ +A LL M + P+ + LI +L
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRL 612
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + M D+ +P V TYT+L EA ++ ++ G+KP++
Sbjct: 299 CVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNI 358
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT ++D C + + ELL + +E+G+ PNV IT+N +I
Sbjct: 359 HTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNV------------------ITYNALI 400
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
C G I+ AL ++ LM P+ Y+ LIK
Sbjct: 401 NGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIK 436
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + M P V+T TIL AY + + G KPD
Sbjct: 578 CTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDA 637
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT + +C+ GR + +++ + E GV+P++ T++++I
Sbjct: 638 HTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDL------------------FTYSSLI 679
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +G+ + A ++L M++ G PS+ + +LIK L
Sbjct: 680 KGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHL 717
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 26/168 (15%)
Query: 4 NKNDFFEAR-KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
NK++ FE + K+I ++ + + E ++ M + D + P++YTY +++G+C
Sbjct: 170 NKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYC 229
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT------------------ 104
KVG E + ++ +E G+ P+ T + + +G+ R
Sbjct: 230 KVGNVEEANQYVSMIVEAGLDPDFFT----YTSLIMGYCQRKDLDSAFKVFKEMPLKGCR 285
Query: 105 ---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + ++I LC +ID+A+ L M + P+ Y LIK L
Sbjct: 286 RNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKAL 333
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 82/225 (36%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYT 55
DF A + M +G P+ TYT + +A +M+ +K +G+ PD++TY+
Sbjct: 617 DFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYS 676
Query: 56 AVMDGFCKVGRSNE---------------------------------------------- 69
+++ G+ +GR+N
Sbjct: 677 SLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMS 736
Query: 70 -------VMELLNEAIERGVTPNVVTLIHLH-NVIDIGHI-----------------PRT 104
V+ELL + +E GVTPN + L + +IG++ P
Sbjct: 737 NMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSE 796
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ FN ++ C + K ++A ++ M G +P LI +L
Sbjct: 797 LVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRL 841
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EAR ++ M + G PN TT+ IL EA ++ + + + PD
Sbjct: 243 CKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDA 302
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+TY ++ GFCK GR E M L E ++P+VV TLI+ +
Sbjct: 303 WTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEE 362
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P ++T+N +++ GK+D+ + M E G +P Y+TLI
Sbjct: 363 MEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLI 414
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 36/179 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA VI+ M N P+ TY ++ EA + ++N L PDV
Sbjct: 278 CRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDV 337
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G + G S E +L+ E RG+ PN VT +NV+
Sbjct: 338 VTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVT----YNVMVKWFVKKGKMDEVDK 393
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P +T+N +I C VGK+D+A L+ M G +T+++ L
Sbjct: 394 TVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRAL 452
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----- 88
EA +L +++ G PD TY ++DG CK GR NE +LL + +G+ PN T
Sbjct: 215 EAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILV 274
Query: 89 --------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L NVI++ +P T+N +I C G+I +A+ L M
Sbjct: 275 VGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLS 334
Query: 137 PSRTLYDTLI 146
P Y+TLI
Sbjct: 335 PDVVTYNTLI 344
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ GY + +Y L +A + +K + P +
Sbjct: 453 CRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSI 512
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------LHN- 94
TY +++ G C++G++N+ ++ L+E +E G+ P+ + T+IH HN
Sbjct: 513 ITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNK 572
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ P +T N ++ LC G ++KAL L GK Y+T+I L ++
Sbjct: 573 MVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKE 630
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 36/177 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K E K + M ++G P++ TY L EA+ ++ + GLK D
Sbjct: 382 FVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMD 441
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH---------- 100
T ++ C+ + +E +LL A RG + V+ + + IG+
Sbjct: 442 DVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVS----YGTLIIGYFKHEKASQAL 497
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IP IT+N++I LC +GK ++A+ L + E G +P Y+T+I
Sbjct: 498 RLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTII 554
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E K+I+ M G PN TY ++ E + + ++ G PD+ TY ++
Sbjct: 355 EGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLI 414
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
CKVG+ +E L++E +G+ + VTL N +++ALC
Sbjct: 415 SWHCKVGKMDEAFRLMDEMGRKGLKMDDVTL------------------NTMLRALCRER 456
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K+D+A LL G Y TLI
Sbjct: 457 KLDEAHDLLCSARRRGYFVDEVSYGTLI 484
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA+++L ++ L PD YTY A++ G GR + E +++ E+G + N +
Sbjct: 635 EAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSENQFLELGKR 694
Query: 94 NVIDIGHIPR-----TITFNNVIQALCGVGK 119
IP+ I ++N I LC G+
Sbjct: 695 QDARTSEIPQEPHPNAIAYSNKINELCSQGR 725
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+K + ++ ++ G C R E + +L + + D G P I
Sbjct: 192 GVKINTNSFNILIHGSCMENRFGEAIRVLGK------------------MRDYGCPPDNI 233
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N ++ LC G++++A LL M G P+RT ++ L+
Sbjct: 234 TYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILV 274
>gi|222622724|gb|EEE56856.1| hypothetical protein OsJ_06476 [Oryza sativa Japonica Group]
Length = 538
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA+ ++ M G PNV TY +L E ++LM KP
Sbjct: 206 YCRDGRIVEAKLLMAEMERLGCLPNVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPS 265
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
TY M+G CK G++ E +ELL+ + G+ P T L H ++D ++
Sbjct: 266 TVTYNIYMNGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLE 325
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +N V+ +LC +GK + LL M + G P+ ++ LI+ L
Sbjct: 326 RSTELKWYAGVVAYNTVMSSLCEMGKWRGIMKLLTDMIKKGIEPNTRTFNILIRSL 381
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K D M +G PN ++ IL A+E+ + G++PDV TY+ ++
Sbjct: 112 EALKAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWEL---IHKSGVEPDVGTYSTLI 168
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G C+ G+ E +L+ +E+ P V T+ ++QA C G
Sbjct: 169 AGLCRAGKIVEAWGVLDWMLEKNCRPMVQ------------------TYTPIVQAYCRDG 210
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I +A LL+ M G +P+ Y+ LI+ L
Sbjct: 211 RIVEAKLLMAEMERLGCLPNVVTYNVLIRAL 241
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 21 NGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G P+V TY+ I+EA+ +L + +P V TYT ++ +C+ GR E
Sbjct: 155 SGVEPDVGTYSTLIAGLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVE 214
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVI-------DIGHI----------PRTITFNNVIQ 112
L+ E G PNVVT L + ++ + P T+T+N +
Sbjct: 215 AKLLMAEMERLGCLPNVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMN 274
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC GK +AL LL +M G P+ + L+
Sbjct: 275 GLCKKGKAKEALELLDVMLGEGLEPTAYTWSILL 308
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 45/161 (27%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA +++D M G P T++IL +A +L V
Sbjct: 277 CKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGV 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y VM C++G+ +M+LL + I++G+ PN T TFN +I
Sbjct: 337 VAYNTVMSSLCEMGKWRGIMKLLTDMIKKGIEPN------------------TRTFNILI 378
Query: 112 QALCGVGK--IDKAL--------------LLLFLMYEHGKI 136
++LC GK + K+L +LL Y HGK+
Sbjct: 379 RSLCVGGKSSLAKSLIHSLGFAANVVTYNILLHWFYYHGKL 419
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHN------ 94
+ G P+V Y +++ + GR E ++ +E + GV PN + LI +H
Sbjct: 87 DGGAPPNVLCYNTLVNALAEAGREGEALKAFDEMLASGVAPNASSQNILIKMHARRSEFD 146
Query: 95 -----VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P T++ +I LC GKI +A +L M E P Y +++
Sbjct: 147 LAWELIHKSGVEPDVGTYSTLIAGLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQ 204
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G+ NV TY IL EA ++ ++ + PD TYT ++DG C+ + +
Sbjct: 398 GFAANVVTYNILLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIIIDGLCRERKFDAA 457
Query: 71 MELLNEAIERGVTPNVVT-----LIHLHNVIDIGHI-------PRTITFNNVIQALCGVG 118
+++ G++ +V+T L++ + +I I P F+ I+ C VG
Sbjct: 458 TACFLKSLTSGLSMDVLTVLLNRLVYADKIWEINRIFDGKDFVPDHHVFDLTIRTFCRVG 517
>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
filifolia]
Length = 431
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ +L +E + + + PN VT L
Sbjct: 212 VYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLI 324
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A +ID M G P+ TYT L A+E + + ++ D
Sbjct: 293 CKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 352
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P+ T+ +I
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDAR------------------TYTMII 394
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + K LL M G +PS Y+ L+
Sbjct: 395 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|115445813|ref|NP_001046686.1| Os02g0321000 [Oryza sativa Japonica Group]
gi|113536217|dbj|BAF08600.1| Os02g0321000 [Oryza sativa Japonica Group]
Length = 542
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA+ ++ M G PNV TY +L E ++LM KP
Sbjct: 210 YCRDGRIVEAKLLMAEMERLGCLPNVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPS 269
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVID-IGHIP 102
TY M+G CK G++ E +ELL+ + G+ P T L H ++D I +
Sbjct: 270 TVTYNIYMNGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLE 329
Query: 103 RT---------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
R+ + +N V+ +LC +GK + LL M + G P+ ++ LI+ L
Sbjct: 330 RSTELKWYAGVVAYNTVMSSLCEMGKWRGIMKLLTDMIKKGIEPNTRTFNILIRSL 385
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K D M +G PN ++ IL A+E+ + G++PDV TY+ ++
Sbjct: 116 EALKAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWEL---IHKSGVEPDVGTYSTLI 172
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G C+ G+ E +L+ +E+ P V T+ ++QA C G
Sbjct: 173 AGLCRAGKIVEAWGVLDWMLEKNCRPMVQ------------------TYTPIVQAYCRDG 214
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I +A LL+ M G +P+ Y+ LI+ L
Sbjct: 215 RIVEAKLLMAEMERLGCLPNVVTYNVLIRAL 245
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 36/161 (22%)
Query: 21 NGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G P+V TY+ I+EA+ +L + +P V TYT ++ +C+ GR E
Sbjct: 159 SGVEPDVGTYSTLIAGLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVE 218
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVI-----------DIGHI----------PRTITFN 108
L+ E G PNVVT +NV+ ++ + P T+T+N
Sbjct: 219 AKLLMAEMERLGCLPNVVT----YNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYN 274
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC GK +AL LL +M G P+ + L+ L
Sbjct: 275 IYMNGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCL 315
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA +++D M G P T++IL +A +L V
Sbjct: 281 CKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGV 340
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------------LIHL 92
Y VM C++G+ +M+LL + I++G+ PN T LIH
Sbjct: 341 VAYNTVMSSLCEMGKWRGIMKLLTDMIKKGIEPNTRTFNILIRSLCVGGKSSLAKSLIH- 399
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G +T+N ++ GK+ +A L+ +M E P Y +I L
Sbjct: 400 ----SLGFAANVVTYNILLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIIIDGL 452
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH---NVIDI- 98
G P+V Y +++ + GR E ++ +E + GV PN + LI +H + D+
Sbjct: 93 GAPPNVLCYNTLVNALAEAGREGEALKAFDEMLASGVAPNASSQNILIKMHARRSEFDLA 152
Query: 99 -------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P T++ +I LC GKI +A +L M E P Y +++
Sbjct: 153 WELIHKSGVEPDVGTYSTLIAGLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQ 208
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G+ NV TY IL EA ++ ++ + PD TYT ++DG C+ + +
Sbjct: 402 GFAANVVTYNILLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIIIDGLCRERKFDAA 461
Query: 71 MELLNEAIERGVTPNVVT-----LIHLHNVIDIGHI-------PRTITFNNVIQALCGVG 118
+++ G++ +V+T L++ + +I I P F+ I+ C VG
Sbjct: 462 TACFLKSLTSGLSMDVLTVLLNRLVYADKIWEINRIFDGKDFVPDHHVFDLTIRTFCRVG 521
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A + + M +P+V T++IL EA +L + G+KPD
Sbjct: 241 FCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPD 300
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
V TY ++MDG+C V + N+ + N + GVT NV +
Sbjct: 301 VVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFK 360
Query: 90 -IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+H N+ IP +T+N++I LC GKI AL L+ M++ G + Y++++
Sbjct: 361 EMHCKNI-----IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDA 415
Query: 149 L 149
L
Sbjct: 416 L 416
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-----------KPDVYTYTAVM 58
EA + M G P+V TY+ L + ++ ND + PDVYT++ ++
Sbjct: 214 EAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILV 273
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HNVIDIGHIP 102
DGFCK GR E +L +++G+ P+VVT L N + G +
Sbjct: 274 DGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVT 333
Query: 103 RTI-TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++N +I C + K+D+A+ L M+ IP Y++LI L
Sbjct: 334 ANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGL 381
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGY-HPNVTTYTILEAY----------EMLMNVKNDGLKPDV 51
C A K++D M D G H +T +IL+A +L +K++G++PD+
Sbjct: 382 CKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDM 441
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYT ++DG CK GR + + + + +G V T+ +I
Sbjct: 442 YTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVY------------------TYTVMI 483
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
Q C DKAL LL M ++G IP+ Y+ +I L ++
Sbjct: 484 QGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEK 524
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A D + G+H N Y L A ++L V ++P+V
Sbjct: 137 CLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNV 196
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
Y ++D CKV NE +L +E + +G++P+VVT I L N
Sbjct: 197 VMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNK 256
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ I P TF+ ++ C G++ +A +L +M + G P Y +L+
Sbjct: 257 MISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLM 308
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 21/124 (16%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------- 89
+G+ D+ T+ +++ F ++G ++ + +++G PN +TL
Sbjct: 85 NGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQ 144
Query: 90 -IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTL 145
+H H+ V+ +G + + +I LC VG+ AL LL + GK+ P+ +Y+T+
Sbjct: 145 ALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRV--DGKLVQPNVVMYNTI 202
Query: 146 IKKL 149
I +
Sbjct: 203 IDSM 206
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C ++ A K+ M D PNVTTY I +A + + G PD
Sbjct: 492 FCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPD 551
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY+ ++ GF + ++ EL I RG PN VT L+H
Sbjct: 552 VITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFR 611
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ G P +T+ ++ C VGKI++A+ + M G P Y+ L+K
Sbjct: 612 KMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLK 665
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 37/155 (23%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++ M + G P+ TYT L +A E+ + + G PDV
Sbjct: 598 CKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDV 657
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
Y ++ GF + G+ E +L + R P+ V+ HN++
Sbjct: 658 VAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVS----HNIMIDGLSKAKRLDDAVE 713
Query: 97 -------DIGHIPRTITFNNVIQALCGVGKIDKAL 124
D G P +T+N++I LCG ++ +A+
Sbjct: 714 VFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAM 748
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP-DVYTYTAV 57
EA K+ M +G P+ T Y+ + EA+++ + + + P + +TA
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAF 311
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI---------------- 101
+ G CK G+ + E E + V + + +I+ G I
Sbjct: 312 LSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQ 371
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + T ++VIQ LC G++D AL LL M + G P + LI +L
Sbjct: 372 PSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINEL 419
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 56/150 (37%), Gaps = 52/150 (34%)
Query: 49 PDVYTYTAVMDGFCKV-----------------------------------GRSNEVMEL 73
PDV +Y+ ++DGFCK+ GR + +
Sbjct: 480 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 539
Query: 74 LNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCG 116
E + G +P+V+ TLIH +I G P +T+N ++ LC
Sbjct: 540 YEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCK 599
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K D+A L M E G P R Y TL+
Sbjct: 600 ESKPDEAHELFRKMVERGCDPDRVTYTTLL 629
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 30/172 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D +A ++ M P++ TY L EA + ++ +G+KPD+
Sbjct: 211 CKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDI 270
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVID-------- 97
TY +++ GFCK GR E M L E R TPN VT L N +D
Sbjct: 271 VTYNSLIHGFCKEGRMREAMRLFKEI--RDATPNHVTYTTLIDGYCRLNDLDQALRLREE 328
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N++++ LC +G+I A LL M E P +TLI
Sbjct: 329 MEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLI 380
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 30/173 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA ++ + D PN TYT L +A + ++ GL P
Sbjct: 280 FCKEGRMREAMRLFKEIRDAT--PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPT 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
V TY +++ C++GR + +LLNE E+ + P+ VT L N
Sbjct: 338 VVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKN 397
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G T+ +I C + ++D A LL M + G PS Y L+
Sbjct: 398 RMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLV 450
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/209 (20%), Positives = 79/209 (37%), Gaps = 61/209 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHP-----------------------------------N 26
Y N EA +V ++M NG+ P N
Sbjct: 140 YANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEAN 199
Query: 27 VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+ Y +L +A +L +++ + PD++TY ++ +CK G E + + +
Sbjct: 200 IHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQD 259
Query: 76 EAIERGVTPNVVTLIHL-HNVIDIGHI--------------PRTITFNNVIQALCGVGKI 120
G+ P++VT L H G + P +T+ +I C + +
Sbjct: 260 RMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPNHVTYTTLIDGYCRLNDL 319
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D+AL L M G P+ Y+++++KL
Sbjct: 320 DQALRLREEMEAQGLYPTVVTYNSILRKL 348
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D A KV + M + G + TY L A E+L+++ + G P
Sbjct: 383 YCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPS 442
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY+ ++DG+C V++L +E + +G+ + +++ + +
Sbjct: 443 YCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLC-----------------VDKSL-YRAL 484
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
I+ C ++D A + LM E G + +Y +L
Sbjct: 485 IRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSL 519
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + + L +E + +G+ PN VT L
Sbjct: 212 VYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TYT ++DG CK G + E I+ + + V LI L
Sbjct: 317 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T T+ ++ C G + K LL M G PS Y+ L+
Sbjct: 377 EMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 429
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 159 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 219 INGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLI 254
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC DF ARKV D M G + + IL EA M + G++ D
Sbjct: 335 YCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHD 394
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++ G CK GR +E +++ + + G+ P+V TF +
Sbjct: 395 VITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVS------------------TFTPL 436
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +C G++D A+ LL +M+ G P + D++I
Sbjct: 437 IDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSII 472
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 29/154 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAY-------EMLMNVKND----GLKPDVYTYTAVM 58
EAR++ + M D G PN Y L AY EM V ++ GLK + ++
Sbjct: 308 EARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILV 367
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
GFC GR +E + + E +++G+ +V IT+N +IQ LC G
Sbjct: 368 TGFCTHGRVDEALGMFEEMVKKGIEHDV------------------ITYNILIQGLCKAG 409
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ +A+ + + G PS + + LI + ++
Sbjct: 410 RLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEE 443
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
EA + +K G D TYT +DG CK+G +E ++ NE +++G+ PN L
Sbjct: 273 EALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLV 332
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++ G T++ N ++ C G++D+AL + M + G
Sbjct: 333 AYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIE 392
Query: 137 PSRTLYDTLIKKL 149
Y+ LI+ L
Sbjct: 393 HDVITYNILIQGL 405
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA ++++ + G P+V +Y L EA L + N G++P+
Sbjct: 262 CRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY +++GFCK G ++L +A+ +G IP T++++I
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGF------------------IPDEFTYSSLI 363
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G +++A+ + + E G S LY+TL+K L +Q
Sbjct: 364 NGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQ 404
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN D A V + G+ ++ Y +L+A +++ ++ G PD+
Sbjct: 367 CNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDI 426
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY V++G CK+G ++ +LN+AI +G P++ TFN +I
Sbjct: 427 WTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDI------------------FTFNTLI 468
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C +DKA+ +L M HG P Y+TL+ L
Sbjct: 469 DGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGL 506
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + D M G P++ T+ L E+ ++ V G+ P+++T+ +
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI--------------HLHNVIDIGHI 101
G C+ G +E LL + G+TP+V+ TLI +LH +++ G
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N +I C G + A +L G IP Y +LI L
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGL 366
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 81/208 (38%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K EA V + M P+V +Y + +A+++ M +K+ G+ PD
Sbjct: 86 YGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPD 145
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLN----------------------------------- 75
VYT+T M FC GR + LLN
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205
Query: 76 EAIERGVTPNVVT---LIHL--------------HNVIDIGHIPRTITFNNVIQALCGVG 118
E +++G+ P+++T LIH+ V+ G P TFN IQ LC G
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
ID+A LL + G P Y+TLI
Sbjct: 266 AIDEAARLLESIVSEGLTPDVISYNTLI 293
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 30/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + +A +++D M +G P+V TY L + + G P+
Sbjct: 471 YCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPN 530
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY +++ FCK + +E MEL E RG+TP++VTL L
Sbjct: 531 IITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL------------------ 572
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLI 146
I LC G++DKA L + + K S +++ +I
Sbjct: 573 ICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMI 609
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +++ G P++ T+ L +A E+L + + G+ PDV
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDV 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++G CK + + V++ +E+G TPN+ IT+N +I
Sbjct: 497 ITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNI------------------ITYNILI 538
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ C K+ +A+ L M G P TLI
Sbjct: 539 ESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD YTY ++D +CK G + L E I +G+ P+ T
Sbjct: 635 PDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTC------------------G 676
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
V+ LC ++ +A++++ LM ++G +P
Sbjct: 677 KVLNCLCVTHRLSEAVVIINLMVQNGIVPEE 707
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K++ A KV M DNG+ PN T+TIL A+ + +K+ + P
Sbjct: 294 HCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPT 353
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
T ++ G CK GRS E +L N+ + +G P + T+I
Sbjct: 354 DTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYR 413
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++G P T+T+ ++I C ID AL LL M G Y TLI
Sbjct: 414 EMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLI 466
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 62/210 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + A +++ + ++G PN TY++L +A+E +K G++
Sbjct: 155 YCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSS 214
Query: 51 VYTYTAVMDGF----------------------------------CKVGRSNEVMELLNE 76
VY+ ++++G+ CK G+ NE L +E
Sbjct: 215 VYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDE 274
Query: 77 AIERGVTPNVVT-----LIHLHN------------VIDIGHIPRTITFNNVIQALCGVGK 119
I +G++PNVV+ L H ++D G P +TF ++ G
Sbjct: 275 VIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGD 334
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ A + M + +P+ T +IK L
Sbjct: 335 IENAFSIFHRMKDANILPTDTTLGIIIKGL 364
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A ++++ + G PN Y + EA ++ + N+G+ D
Sbjct: 469 FCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCD 528
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TYT+++DG K GR ++ E + +G+ P+ D H +
Sbjct: 529 LKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPD-----------DRAHTV-------L 570
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC G+ + A +L M IPS +Y+TLI
Sbjct: 571 INGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI 606
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V M + G P+ TYT L A ++L ++K GLK D+ Y ++D
Sbjct: 408 ASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLID 467
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPN 85
GFCK ELLNE G++PN
Sbjct: 468 GFCKRRDMKSAHELLNELRGAGLSPN 493
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 29/165 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKN----------DGLKPDVYTYTAVM 58
EA ++ D M + G N+ T +++ Y M N+++ GL P+ TY+ ++
Sbjct: 128 EALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLI 187
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHI 101
DG CK G + E +E +G+ +V +L ++ ++ G +
Sbjct: 188 DGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESG-L 246
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN ++ LC GK+++A L + G P+ Y+ +I
Sbjct: 247 ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNII 291
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K + A ++ M G+ P T+T + EA + ++ N G ++
Sbjct: 86 CLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNL 145
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
T++M G+C G + L+NE E G+ PN VT
Sbjct: 146 AVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVT 182
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 133 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 192
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + + L +E + +G+ PN VT L
Sbjct: 193 VYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 252
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 253 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 305
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 238 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TYT ++DG CK G + E I+ + + V LI L
Sbjct: 298 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 357
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T T+ ++ C G + K LL M G PS Y+ L+
Sbjct: 358 EMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 410
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 88 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 139
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 140 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVL 199
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G +P+ + TLI
Sbjct: 200 INGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLI 235
>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + ++ +++D + G PN TY+ L EA ++L + G KP++
Sbjct: 178 CMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNL 237
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y ++ G CK GR+ + M+L E +G +PNVV ++N ++
Sbjct: 238 VSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVV------------------SYNILL 279
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++LC G+ ++A +LL M + PS Y+ LI L
Sbjct: 280 RSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSL 317
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A KV++ M +G P+ +YT L A +++ ++ G +
Sbjct: 108 CKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNT 167
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
TY +++ G C G + ++LL+ I++G+ PN T L
Sbjct: 168 ATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDE 227
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +++N ++ LC G+ + A+ L + G P+ Y+ L++ L
Sbjct: 228 IIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSL 282
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ + EA ++ M + P+ TY IL A E+L + KP
Sbjct: 283 CNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTA 342
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT----- 106
+Y ++ CK + + V++ L++ + R PN T + + + G + +
Sbjct: 343 SSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSL 402
Query: 107 -----------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ VI +LC G A LL+ M ++G P Y +LI+ L
Sbjct: 403 GNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGL 456
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G KPDV+ T ++ CK + + ++++ I G+ P+ + L + +
Sbjct: 92 GQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYA 151
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G+ T T+N++++ LC G + ++L LL + + G +P+ Y L++
Sbjct: 152 MQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLE 210
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+++L + G PD +TY++++ G C G +LNEAIE + +++ +
Sbjct: 430 AFQLLYEMTKYGFTPDSFTYSSLIRGLCMEG-------MLNEAIE------IFSVMEENI 476
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+D T +N++I C + D AL + +M G + + T Y L++
Sbjct: 477 KLD------TENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVE 523
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA +++ G+ P+ TY L A E+ + G+KPD
Sbjct: 303 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 362
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI----- 98
+ Y +++ G C G ++++NE E G P++ T L + N+ D
Sbjct: 363 IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN 422
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G++P TFN +I C K+D AL L+ M+E+G P Y++++ L
Sbjct: 423 DAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 478
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA +++D M P+V TY L EA L + N G PD
Sbjct: 235 CEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 293
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY ++DG+CK+ E ELL +A+ +G P+ +T+ ++I
Sbjct: 294 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD------------------QVTYCSLI 335
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G +++AL L G P +Y++L+K L Q
Sbjct: 336 NGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 376
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C E + M G HPN TY IL EA ++++ + +GL PD
Sbjct: 479 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA 538
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLH-------N 94
++ ++ GFC+ G L + E+G + T +++H
Sbjct: 539 VSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDE 598
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ GH + T+ +I C +D+A + L M + G IPS + + +I L
Sbjct: 599 MLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 653
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 29/168 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVM 58
+AR++ D M PN+ + +LEA +L V G+ +++TY +
Sbjct: 172 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 231
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
G C+ GR E + L+ + + P+VVT + +L +++ G +
Sbjct: 232 RGLCEAGRLPEAVRLV-DGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 290
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N +I C + + +A LL G +P + Y +LI L
Sbjct: 291 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 338
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
++D + D YH +A+++ + + G+ PD++T+T + FC R + + L
Sbjct: 94 IMDALVDAAYHD--------QAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRL 145
Query: 74 LNEAIERGVTPNVVTLI------HLHNVIDI------GHI-PRTITFNNVIQALCGVGKI 120
L RG + H H+ + H+ P FN V+ ALC G +
Sbjct: 146 LRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDV 205
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A LLL + + G + Y+ I+ L
Sbjct: 206 LEAGLLLGKVIQRGMSINLFTYNIWIRGL 234
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C D A + + + GY T+ T++ A+ +N+ + G + D
Sbjct: 548 FCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRAD 607
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY ++DG CK + L E I++G P++ T + N + + H R +
Sbjct: 608 SYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNH--RVFQAVGI 665
Query: 111 IQALCGVGKI 120
I + +G +
Sbjct: 666 IHIMVKIGVV 675
>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + ++ +++D + G PN TY+ L EA ++L + G KP++
Sbjct: 178 CMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNL 237
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y ++ G CK GR+ + M+L E +G +PNVV ++N ++
Sbjct: 238 VSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVV------------------SYNILL 279
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++LC G+ ++A +LL M + PS Y+ LI L
Sbjct: 280 RSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSL 317
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A KV++ M +G P+ +YT L A +++ ++ G +
Sbjct: 108 CKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNT 167
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LHN 94
TY +++ G C G + ++LL+ I++G+ PN T L
Sbjct: 168 ATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDE 227
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +++N ++ LC G+ + A+ L + G P+ Y+ L++ L
Sbjct: 228 IIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSL 282
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN+ + EA ++ M + P+ TY IL A E+L + KP
Sbjct: 283 CNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTA 342
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT----- 106
+Y ++ CK + + V++ L++ + R PN T + + + G + +
Sbjct: 343 SSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSL 402
Query: 107 -----------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ VI +LC G A LL+ M ++G P Y +LI+ L
Sbjct: 403 GNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGL 456
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G KPDV+ T ++ CK + + ++++ I G+ P+ + L + +
Sbjct: 92 GQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYA 151
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G+ T T+N++++ LC G + ++L LL + + G +P+ Y L++
Sbjct: 152 MQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLE 210
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+++L + G PD +TY++++ G C G +LNEAIE + +++ +
Sbjct: 430 AFQLLYEMTKYGFTPDSFTYSSLIRGLCMEG-------MLNEAIE------IFSVMEENI 476
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+D T +N++I C + D AL + +M G + + T Y L++
Sbjct: 477 KLD------TENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVE 523
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + + M P++ TY++L EA EM + + G PDV TY+ ++
Sbjct: 274 EAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILI 333
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
+G+CK + M+L E +RGV N VT L ++ G
Sbjct: 334 NGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVH 393
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT+N ++ LC GKI+KAL++L M ++G Y+ +I+ +
Sbjct: 394 PNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGM 441
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ +M G P+V TY+IL ++ + G+ +
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
TYT ++ G+C+ G+ N E+ + GV PN++T + LH + D G I +
Sbjct: 362 VTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILAD 421
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+N +I+ +C G++ A + + G +P Y T++
Sbjct: 422 MQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMM 473
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++ M +G P+V TY L +A M+ + + PDV
Sbjct: 197 CKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDV 256
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVID-------- 97
+T+ A++D K GR +E E E I R + P++VT LI+ +++ +D
Sbjct: 257 FTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGF 316
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P +T++ +I C K++ + L M + G + + Y LI+
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQ 369
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKP 49
C+C + A + M G+ P++ T+ + +A M + G KP
Sbjct: 125 CFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP 184
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V Y ++DG CK + + ++LLN + G+ P+VV T+N+
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVV------------------TYNS 226
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC G+ A ++ M + P ++ LI
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALI 263
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ ++ T +++ FC+ + + + L + I+ G P++VT L N
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDA 170
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +G+ P + +N +I LC ++D AL LL M + G P Y++LI
Sbjct: 171 LYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG 230
Query: 149 L 149
L
Sbjct: 231 L 231
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++ M G HPN+ TY +L +A +L +++ +G+ D
Sbjct: 371 YCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDAD 430
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ TY ++ G CK G + ++ +G+ P++ T
Sbjct: 431 IVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWT 468
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A ++ M NG ++ TY I+ +A+++ ++ GL PD+
Sbjct: 407 CDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDI 466
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+TYT +M G K G E L + E G+ PN
Sbjct: 467 WTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIH 91
P + ++ ++ K+ + + V+ L + G+ N+ T L
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L +I +GH P +TF +++ C ++ AL + M G P+ +Y+T+I L
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGL 196
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY--EMLMNVKND--------GLKPDV 51
CN ++ +++ M ++ PNV + T+++A E ++ + +D G++PDV
Sbjct: 298 CNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDV 357
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYTA+MDG C +E +++ + + +G PNV + LI+ L
Sbjct: 358 VTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ 417
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G I T+T+N +I LC VG++ A+ L M G+IP Y L+ L
Sbjct: 418 MSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 472
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ A V+ + G P+ TT+ L EA + +G +PD
Sbjct: 157 FCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPD 216
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY +M+G CKVG ++ + LL +++ PNV+ T+I
Sbjct: 217 VVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFS 276
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P T+N++I ALC + + LL M +P+ ++ T++ L ++
Sbjct: 277 EMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKE 335
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A V+D M G P+V TYT L EA ++ + + G P+V
Sbjct: 333 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNV 392
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
+Y +++G+C++ R ++ M LL + +G+ + VT LIH H
Sbjct: 393 RSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHE 452
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ G IP +T+ ++ LC + +A++LL
Sbjct: 453 MVASGQIPDLVTYRILLDYLCKNHHLAEAMVLL 485
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +++ EA KV D M G PNV +Y IL +A +L + GL D
Sbjct: 367 HCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIAD 426
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY ++ G C VGR + L +E + G P++VT
Sbjct: 427 TVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVT 464
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G+ PDVYT +++ FC + R +L + ++ G P+ T
Sbjct: 142 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEA 201
Query: 90 IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+HL + I G P +T+ ++ LC VG A+ LL M + P+ Y+T+I
Sbjct: 202 LHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDS 261
Query: 149 L--DQQ 152
L D+Q
Sbjct: 262 LCKDRQ 267
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 28/170 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
++A V+ M +N PN+TT+ IL + ++ + + +KP+V +Y +
Sbjct: 277 MYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNS 336
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-------G 99
+++G C G+ +E + + ++ + GV PN++T LI+ L +D+ G
Sbjct: 337 LINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG 396
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P T +N +I A C +GKID L M G +P Y+ LI L
Sbjct: 397 AVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGL 446
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN EA + D M G PN+ TY L EA +M +VK G P
Sbjct: 342 CNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTT 401
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI-------------HLHNV 95
Y ++D +CK+G+ ++ L E G+ P+V T LI L +
Sbjct: 402 RMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQ 461
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +P +TF+ +++ C G+ KA +LL M + G P Y+ ++K
Sbjct: 462 LTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMK 513
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 31/160 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M PNV T+ ++ +A +++ ++K G P+V +Y ++DG+CK+G
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGG 273
Query: 67 SNEVME---LLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTIT 106
+ ++ + +L E +E V+PN+ T L ++D P I+
Sbjct: 274 NGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVIS 333
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N++I LC GKI +A+ + M G P+ Y+ LI
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDV 51
YC + + + M G P+V TY L EA + L + PD+
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDL 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP--------- 102
T+ +M+G+C+ G S + LL E + G+ P +T +N++ G+
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLT----YNIVMKGYCKEGNLKAATN 526
Query: 103 -RT------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
RT ++N ++Q GK++ A +LL M E G +P+R Y+ + +++
Sbjct: 527 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEM 586
Query: 150 DQQ 152
Q
Sbjct: 587 VDQ 589
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-LEAYEMLMNVK-----------NDGLKP 49
YC K + +A ++ M G P TY I ++ Y N+K L+
Sbjct: 480 YCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRM 539
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIP 102
+V +Y ++ G+ + G+ + LLNE +E+G+ PN +T I ++D G +P
Sbjct: 540 NVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVP 593
>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 31/159 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
+ G P+V TY+ L EA ++L++ + G PD +Y+ ++ FC GR
Sbjct: 125 LLKTGITPDVITYSSLLQCFCDMKRTEEALDLLLH-RVSGDLPDAISYSVILKSFCDDGR 183
Query: 67 SNEVMELLNEAIERGV--TPNVVT---LIH--------------LHNVIDIGHIPRTITF 107
S ++LL E+G +P+VV+ +IH H +I G++P +T+
Sbjct: 184 SQCALDLLRMMAEKGAEHSPSVVSYNLVIHGFFKEGEISKACHLFHGMIQQGYVPDVVTY 243
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N+VI ALC +DKA ++L M + P Y++LI
Sbjct: 244 NSVINALCKARAMDKAEVVLRSMVHNSVQPDAVTYNSLI 282
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V+ M N P+ TY L E + +L +++ G+ P +
Sbjct: 251 CKARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSL 310
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLH---------NVIDI--- 98
T ++VMD CK G+ E E+ G P++V I LH +ID+
Sbjct: 311 VTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYSIMLHGYAIEGSLVKMIDLCEV 370
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P FN +I A G +D A+L M + G P+ Y T+I
Sbjct: 371 MARDGVVPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVI 422
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 13 KVIDY---MFDNGYHPNVTTYTIL-EAYEM--LMNVK--------NDGLKPDVYTYTAVM 58
K+ID M +G P++ + IL AY +M+V G+KP+ +TY V+
Sbjct: 363 KMIDLCEVMARDGVVPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVI 422
Query: 59 DGFCKVGRSNEVMELLNEAIERGV 82
FCK+GR ++ ME +E I+ GV
Sbjct: 423 SAFCKMGRMDDAMEKFSEMIDMGV 446
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVI 96
+ PD YTY ++D + R + ++ G+TP+V+T L +
Sbjct: 95 IAPDTYTYNILIDCCHRACRPDLGPAFFGRLLKTGITPDVITYSSLLQCFCDMKRTEEAL 154
Query: 97 DI------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG--KIPSRTLYDTLI 146
D+ G +P I+++ ++++ C G+ AL LL +M E G PS Y+ +I
Sbjct: 155 DLLLHRVSGDLPDAISYSVILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYNLVI 212
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + + M G PN Y L EA + ++ +G+ P+ TY+ ++
Sbjct: 331 EALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLI 390
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHL-HNVIDIGHI 101
DGF K G E+ N+ I G PNVV +HL N+ +
Sbjct: 391 DGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCP 450
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P TITFN I+ LC GK + A+ +L M ++G P+ T Y+ ++ L
Sbjct: 451 PNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGL 498
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
+C ++ E ++ + M G P+V TY T++ + NV+ G P+
Sbjct: 253 FCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPN 312
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+T+T++M G+ GR E ++L N I+ G PN T+ +N +
Sbjct: 313 VHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPN------------------TVAYNTL 354
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC GK+ +A+ + M +G P+ T Y TLI
Sbjct: 355 IHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLI 390
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 34/176 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ D A ++ + M NG PNV YT + A ++ N+ N P+
Sbjct: 393 FAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPN 452
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID------------- 97
T+ + G C G++ M++LN+ + G PNV T + V+D
Sbjct: 453 TITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTT---YNEVLDGLFNAKRTREALQ 509
Query: 98 -IGHIPRT------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+G I +T+N ++ C G AL + + G P Y+T+I
Sbjct: 510 IVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVI 565
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 31/178 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K ++ A KV++ M G PNVTTY + EA +++ ++ +K
Sbjct: 464 CCSGKTEW--AMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKS 521
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI------- 101
++ TY ++ GFC G +++ + + G P+ +T ++ G +
Sbjct: 522 NLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLV 581
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+ +++ +C +D+A++ L M G P+R ++ L++ L
Sbjct: 582 DRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGL 639
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F A +I+ M + PN T+ A ++L ++ G P+V
Sbjct: 429 CRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNV 488
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIH---LHNVIDI--- 98
TY V+DG R+ E ++++ E E + N+VT H + I
Sbjct: 489 TTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGK 548
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLI 146
G P +IT+N VI A C G++ A+ L+ + + G+ P Y +L+
Sbjct: 549 LLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLL 601
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLH 93
N+K DG++ +VYTY ++ CK R + +LL E +G P+ V ++ L
Sbjct: 168 NMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLG 227
Query: 94 NVIDIGHIPRTI-----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
V + + I +N +I C K+++ L M G P Y T+I
Sbjct: 228 KVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINT 287
Query: 149 LDQ 151
L +
Sbjct: 288 LSE 290
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G PNV +YTI EAY +L ++N+G KPDV T+T ++ C GR
Sbjct: 346 MEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGR 405
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-------GHIPRTITFNN 109
++ ++ + + P+ VT I L +V++I G+ + +
Sbjct: 406 ISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTA 465
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VI ALC VG++ +AL + M + G +P + Y++LI
Sbjct: 466 VIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 502
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + F EA K+ M +N P+V L EA+ + +K L+P
Sbjct: 609 CCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEP 668
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY ++ G + G+ EVM LL E PN+ IT+N
Sbjct: 669 TDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNL------------------ITYNT 710
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ LC G ++ AL +L+ M G IP + Y+T+I L
Sbjct: 711 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 750
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + + M + G N T Y IL + + ++ + G+ PD+ +YT ++
Sbjct: 1003 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 1062
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D CK G+ N+ + + +E G+ P++ IT+N +I L
Sbjct: 1063 DTLCKAGQLNDGLTYFRQLLEMGLEPDL------------------ITYNLLIDGLGKSK 1104
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++A+ L M + G +P+ Y++LI L
Sbjct: 1105 RLEEAVSLFNEMQKKGIVPNLYTYNSLILHL 1135
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E KV + M GY TY + +A ++ N+ + G P TY ++
Sbjct: 933 EMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 992
Query: 59 DGFCKVGRSNEVMELLNEAIERG----------------VTPNVVTLIHL-HNVIDIGHI 101
DG K GR + L NE +E G + N + HL +++D G
Sbjct: 993 DGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGIN 1052
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++ +I LC G+++ L + E G P Y+ LI L
Sbjct: 1053 PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 1100
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 67/202 (33%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++ + M +GY+ NV YT + EA EM +K G+ P+ Y+Y +++ GF
Sbjct: 446 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 505
Query: 62 CKVGRSNEVMELLN----------------------------EAIER-------GVTPNV 86
K R + +EL +AI+R G+ P+V
Sbjct: 506 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDV 565
Query: 87 V----TLIHL-------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
V L L H + +G P TIT+ +I+ K D+A+ + +
Sbjct: 566 VAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYD 625
Query: 130 MYEHGKIPS----RTLYDTLIK 147
M E+ +P +L DTL K
Sbjct: 626 MIENNCVPDVLAVNSLIDTLYK 647
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C+ +A+ V M + P+ TY T+L+ + E+ +K DG +V
Sbjct: 401 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 460
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTAV+D C+VGR E +E+ +E ++G+ +P ++N++I
Sbjct: 461 VAYTAVIDALCQVGRVFEALEMFDEMKQKGI------------------VPEQYSYNSLI 502
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
+ AL L M HG P+
Sbjct: 503 SGFLKADRFGDALELFKHMDIHGPKPN 529
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 18 MFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
+F N Y + + ++ YE++ K+ G+ PDV AV+ G K GR + +E
Sbjct: 535 LFINYYGKSGESIKAIQRYELM---KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL 591
Query: 78 IERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKI 120
GV+P+ +T + +++I+ +P + N++I L G+
Sbjct: 592 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRG 651
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+A + + + E P+ Y+TL+ L ++
Sbjct: 652 DEAWRIFYQLKEMNLEPTDGTYNTLLAGLGRE 683
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
+ + G P++ TY +L EA + ++ G+ P++YTY +++ K G+
Sbjct: 1081 LLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGK 1140
Query: 67 SNEVMELLNEAIERGVTPNVVT 88
+ E ++ E + +G PNV T
Sbjct: 1141 AAEAGKMYEELLTKGWKPNVFT 1162
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTYTAVM 58
E +++ M+ + Y PN+ TY TIL+ A +ML ++ G PD+ +Y V+
Sbjct: 688 EVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 747
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
G K R NE + + +++ + P+ TL
Sbjct: 748 YGLVKEERYNEAFSIFCQ-MKKVLIPDYATL 777
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------- 89
+ +K G PD +TY ++D K R E++++ E +G VT
Sbjct: 902 LFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLV 961
Query: 90 --------IHL-HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
I L +N++ G P T+ ++ L G+I+ A L M E+G + T
Sbjct: 962 KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 1021
Query: 141 LYDTLI 146
+Y+ L+
Sbjct: 1022 IYNILL 1027
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + + M G PN+ TY L EA +M + G KP+V+TY A++
Sbjct: 1108 EAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALI 1167
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPN 85
G+ G ++ I G PN
Sbjct: 1168 RGYSVSGSTDSAYAAYGRMIVGGCLPN 1194
>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D + K ++ M + G+ P++ TY L +A+ + + G+ PD+
Sbjct: 269 CKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDL 328
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+YTA+M+G CK GR E +L + + RG++P++V TLIH LH+
Sbjct: 329 VSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHD 388
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P + T +++ GK AL L+ + G S+ +Y LI L ++
Sbjct: 389 MIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRE 446
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K +A + M+ G P++ +YT L EA+++ + + GL PD
Sbjct: 303 YCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPD 362
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------------LIHLHNVI 96
+ TY ++ G+CK G+ E LL++ I G++P+ T L L+ V+
Sbjct: 363 IVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVV 422
Query: 97 DIGHIPRTIT---FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +I+ ++ +I ALC + A LL M + G P +Y+ LIK Q
Sbjct: 423 ELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQ 480
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E + M G+ P V T L +E+ ++ G+ P++YT+ +
Sbjct: 206 EGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILT 265
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
CK G + +V + L + E G P++V T+N +I + C G
Sbjct: 266 HVLCKDGDTGKVNKFLEKMEEEGFDPDIV------------------TYNTLINSYCRKG 307
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++D A L +MY G +P Y L+ L ++
Sbjct: 308 RLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKE 341
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 28/164 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +N F A+ +++ M +G+ P + Y I EA + M + + +KP++
Sbjct: 444 CRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNL 503
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIG------ 99
TY AV+ ++ RS E L+ E + G+ P++ L N ID
Sbjct: 504 ATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSF 563
Query: 100 -----HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
I T +FN +I+ G I ++L + +M + G +P+
Sbjct: 564 FAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPN 607
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+KV M +G P++ TY+IL +A E+ ++ +K D+Y YT +++
Sbjct: 454 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 513
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ ++ +L +GV PNVV T+N +I LC
Sbjct: 514 GMCKAGKVDDGWDLFCSLSLKGVKPNVV------------------TYNTMISGLCSKRL 555
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +A LL M E G +P+ Y+TLI+
Sbjct: 556 LQEAYALLKKMKEDGPLPNSGTYNTLIR 583
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A ++ M GY P++ T + L +A ++ + G +P
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G +++E + L++ ++RG PN+VT ++L
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 248
Query: 94 NVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ I + FN +I +LC +D AL L M G P+ Y +LI L
Sbjct: 249 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + ++ G++P+V TY++++ C GR ++ +LL++ IE+ + PN+VT L
Sbjct: 278 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 337
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++I P T+N+++ C ++DKA + M
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 397
Query: 137 PSRTLYDTLIK 147
P Y+TLIK
Sbjct: 398 PDVVTYNTLIK 408
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ D M P++ TY L +A +M + + PD
Sbjct: 340 FVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 399
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIH----------LH 93
V TY ++ GFCK R + EL E RG+ + VT L H
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 459
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
++ G P +T++ ++ LC GK++KAL
Sbjct: 460 QMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + M G PNV TY+ L +A ++L ++ + P++ T+ A++
Sbjct: 278 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 337
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH-----------I 101
D F K G+ E +L ++ I+R + P++ T L H+ +D
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 397
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I+ C +++ L M G + Y TLI+ L
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+++ ++M P+V TY L + E+ + + GL D
Sbjct: 375 FCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TYT ++ G G + ++ + + GV P+++T I L + + G + + +
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 494
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I+ +C GK+D L + G P+ Y+T+I L
Sbjct: 495 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 550
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+YTY +++ FC+ + + + LL + ++ G P++VTL L N
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++G+ P TITF +I L K +A+ L+ M + G P+ Y ++ L
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+KV M +G P++ TY+IL +A E+ ++ +K D+Y YT +++
Sbjct: 378 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 437
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ ++ +L +GV PNVV T+N +I LC
Sbjct: 438 GMCKAGKVDDGWDLFCSLSLKGVKPNVV------------------TYNTMISGLCSKRL 479
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +A LL M E G +P Y+TLI+
Sbjct: 480 LQEAYALLKKMKEDGPLPDSGTYNTLIR 507
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ +A ++D M + GY P+ T+T L EA ++ + G +P+
Sbjct: 89 YCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 148
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY V++G CK G + LLN+ + +VV T+I H+ + +++
Sbjct: 149 LVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFK 208
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T++++I LC G+ A LL M E P+ ++ LI
Sbjct: 209 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 261
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + ++ G++P+V TY++++ C GR ++ +LL++ IE+ + PN+VT L
Sbjct: 202 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 261
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++I P T+N++I C ++DKA + M
Sbjct: 262 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 321
Query: 137 PSRTLYDTLIK 147
P Y+TLIK
Sbjct: 322 PDLDTYNTLIK 332
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ D M P++ TY L +A +M + + PD
Sbjct: 264 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 323
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIH----------LH 93
+ TY ++ GFCK R + EL E RG+ + VT L H
Sbjct: 324 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 383
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
++ G P +T++ ++ LC GK++KAL
Sbjct: 384 QMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 414
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K D + ++ M GY P++ T + L +A ++ + G +PD T
Sbjct: 57 KFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 116
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVID 97
+T ++ G +++E + L++ ++RG PN+VT +L N ++
Sbjct: 117 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 176
Query: 98 IGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I + FN +I +LC +D AL L M G P+ Y +LI L
Sbjct: 177 AAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 229
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+++ ++M P++ TY L + E+ + + GL D
Sbjct: 299 FCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 358
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TYT ++ G G + ++ + + GV P+++T I L + + G + + +
Sbjct: 359 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 418
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I+ +C GK+D L + G P+ Y+T+I L
Sbjct: 419 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 474
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C+ + +A +++ M + +PN+ T+ L EA ++ ++ + P
Sbjct: 228 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP 287
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++TY ++++GFC R ++ ++ + + P++ T+N
Sbjct: 288 DIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDL------------------DTYNT 329
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ C +++ L M G + Y TLI+ L
Sbjct: 330 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 369
>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
Length = 690
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y D A V M G PNV TYTIL EA+ M + G++P
Sbjct: 366 YVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPS 425
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------IHLH----NV 95
+ TY++++DGFCK G L + I+ G P+VV + LH +V
Sbjct: 426 IVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSV 485
Query: 96 IDIGHIPR--TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+G R + FN++I C + + D+AL + LM +G P + T+++
Sbjct: 486 KMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMR 539
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ + D G PNV T+ L A+++ ++ G++PD+ Y+ ++D
Sbjct: 270 ASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLID 329
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI--------------------G 99
G+ K G +L ++A+ +GV +VV + ID+ G
Sbjct: 330 GYFKAGMLGMGHKLFSQALHKGVKLDVVV---FSSTIDVYVKSGDLATASVVYKRMLCQG 386
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I+ LC G+I +A + + + G PS Y +LI
Sbjct: 387 ISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N F EA KV M G P+V T+T + EA + + GL+PD
Sbjct: 506 WCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPD 565
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHL--------------H 93
Y ++D FCK + ++L + ++ ++ +IHL +
Sbjct: 566 ALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFN 625
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
N+I+ P +T+N +I C + ++D+A
Sbjct: 626 NLIEGKMEPDIVTYNTMICGYCSLRRLDEA 655
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 46 GLKPD-VYTYTAVMDG-FCKVGRSNEVMELLNEAIERGVTPNVVTLIH------------ 91
G++P V + V+D FCK G + ++ +ERG +V+
Sbjct: 211 GIEPSGVSAHGFVLDALFCK-GEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQIEV 269
Query: 92 ----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L V+D G P +TF +I C G++D+A L +M + G P Y TLI
Sbjct: 270 ASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLI 328
>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
Japonica Group]
gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
Length = 551
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN+ D EAR++ M NG P++ TY ++ EA ++ GL PD
Sbjct: 398 HCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPD 457
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y+Y A++ G C G+ + + L E +RG PN+V + +
Sbjct: 458 IYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLV------------------AYTAL 499
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I L G+ ++A L M G P LY L+ L
Sbjct: 500 ISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D +++ M + G P V TYTIL + + +K+ L D
Sbjct: 188 YTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGD 247
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIP------- 102
VY Y++V++ +C+ G E+ +E + G+ PN T L N IG +
Sbjct: 248 VYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVT 307
Query: 103 ---------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
I FN +I C +DKAL + +M + G Y+TL
Sbjct: 308 DMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTL 359
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEML------------ 39
YC + A +V D NG PN TY L EA EML
Sbjct: 258 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 317
Query: 40 ------------------------MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
M ++ G++ DVYTY + G + R +E LL
Sbjct: 318 QIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR 377
Query: 76 EAIERGVTPNVV---TLIHLH-NVIDI-------------GHIPRTITFNNVIQALCGVG 118
IE+GV PN V TLI +H N D+ G P +T+N ++ G
Sbjct: 378 IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKG 437
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +A M + G +P Y L+
Sbjct: 438 SIREAERFKNEMEKKGLVPDIYSYAALV 465
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+KV M +G P++ TY+IL +A E+ ++ +K D+Y YT +++
Sbjct: 379 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 438
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ ++ +L +GV PNVV T+N +I LC
Sbjct: 439 GMCKAGKVDDGWDLFCSLSLKGVKPNVV------------------TYNTMISGLCSKRL 480
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +A LL M E G +P Y+TLI+
Sbjct: 481 LQEAYALLKKMKEDGPLPDSGTYNTLIR 508
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A ++ M GY P++ T + L +A ++ + G +P
Sbjct: 54 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 113
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G +++E + L++ ++RG PN+VT +L
Sbjct: 114 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 173
Query: 94 NVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ I + FN +I +LC +D AL L M G P+ Y +LI L
Sbjct: 174 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 230
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + ++ G++P+V TY++++ C GR ++ +LL++ IE+ + PN+VT L
Sbjct: 203 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 262
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++I P T+N++I C ++DKA + M
Sbjct: 263 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 322
Query: 137 PSRTLYDTLIK 147
P Y+TLIK
Sbjct: 323 PDLDTYNTLIK 333
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ D M P++ TY L +A +M + + PD
Sbjct: 265 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIH----------LH 93
+ TY ++ GFCK R + EL E RG+ + VT L H
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
++ G P +T++ ++ LC GK++KAL
Sbjct: 385 QMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+++ ++M P++ TY L + E+ + + GL D
Sbjct: 300 FCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TYT ++ G G + ++ + + GV P+++T I L + + G + + +
Sbjct: 360 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 419
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I+ +C GK+D L + G P+ Y+T+I L
Sbjct: 420 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C+ + +A +++ M + +PN+ T+ L EA ++ ++ + P
Sbjct: 229 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP 288
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++TY ++++GFC R ++ ++ + + P++ T+N
Sbjct: 289 DIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLD------------------TYNT 330
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ C +++ L M G + Y TLI+ L
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ ++YTY +++ FC+ + + + LL + ++ G P++VTL L N
Sbjct: 40 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 99
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G+ P TITF +I L K +A+ L+ M + G P+ Y ++
Sbjct: 100 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 159
Query: 149 L 149
L
Sbjct: 160 L 160
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 34/178 (19%)
Query: 6 NDFFEARKVID------YMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
N + R+ +D M + GY N Y++L EA + + G +
Sbjct: 335 NGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCR 394
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------------- 92
P++ Y+AV+DG C+ G+ NE E+LN I G PNV T L
Sbjct: 395 PNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQV 454
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G ++ +I LCGVG++ +A+++ M G P Y ++IK L
Sbjct: 455 WREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGL 512
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH 91
A E+ + PD YTY +MDG CK R +E + LL+E G +P+ V LI
Sbjct: 206 AIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLID 265
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ N+ G P +T+N +I LC GK+DKA+ LL M IP
Sbjct: 266 GLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIP 325
Query: 138 SRTLYDTLIKKLDQQ 152
+ Y TLI L +Q
Sbjct: 326 NDVTYGTLINGLVKQ 340
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M + G PN+ Y+ + EA E+L + + G P+VYTY+++M
Sbjct: 380 EAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLM 439
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNVIDIGHI 101
GF K G S E +++ E E G + N ++ ++ IG
Sbjct: 440 KGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIK 499
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMY---EHGKIPSRTLYDTLIKKLDQQ 152
P T+ ++++I+ LCG+G +D AL L M E P Y+ L+ L Q
Sbjct: 500 PDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQ 553
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+++++ M +G PNV TY+ L EA ++ + G +
Sbjct: 408 CREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNE 467
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
+ Y+ ++DG C VGR E M + ++ + G+ P+ V + + IG +
Sbjct: 468 FCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHE 527
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N ++ LC + +A+ LL M + G P +T + L +
Sbjct: 528 MLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSE 587
Query: 152 Q 152
+
Sbjct: 588 K 588
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D K++D MF G PN TY L +A +L + + P+
Sbjct: 268 CKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G K R+ + LL ERG N H+++V+
Sbjct: 328 VTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQ----HIYSVLISGLFKEGKAEEAMT 383
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P + ++ VI LC GK ++A +L M G +P+ Y +L+K
Sbjct: 384 LWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMK 440
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++D + +G PN+ TY L +A EML +++N G+ PDV +Y V+
Sbjct: 676 KAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVI 735
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
GFCK G E + +L+E GV P P ITFN + G G
Sbjct: 736 KGFCKKGLVQEAIRILSEMTANGVQP----------------CP--ITFNTFMSCYAGNG 777
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+A ++ M EHG +P+ Y +I
Sbjct: 778 LFAEADEVIRYMIEHGCMPNELTYKIVI 805
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EAR+ D + NGY P TY + EA +L ++++ +PD TY ++
Sbjct: 326 EARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELV 385
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHI 101
+ + G +E +++ +GV PN +T + N ++G +
Sbjct: 386 AAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCV 445
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+NNV+ L + + + +L M +G P R ++T++
Sbjct: 446 PNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTML 490
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS-NEVMELLNEAIERGV 82
H T A E+ +K GL P + TY ++D + K+GR+ + ++ELL+E +G+
Sbjct: 245 HAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGL 304
Query: 83 T------PNVVTLIHLHNVIDI-----------GHIPRTITFNNVIQALCGVGKIDKALL 125
V++ ++D G+ P T T+N+++Q G +AL
Sbjct: 305 EFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALN 364
Query: 126 LLFLMYEHGKIPSRTLYDTLI 146
+L M ++ P Y+ L+
Sbjct: 365 ILKEMEDNNCEPDAITYNELV 385
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 29/145 (20%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEA-----------YEMLMNVKNDGLKPDVYTYTAVMDGF 61
K++ M NG P+ T+ + A ++L +KN G +PD T+ ++ +
Sbjct: 469 KILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAY 528
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
+ G +V ++ E + G TP + T+N ++ AL G
Sbjct: 529 GRCGSEVDVAKMYGEMVAAGFTPCIT------------------TYNALLNALARRGNWK 570
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLI 146
A ++ M + G P+ T Y L+
Sbjct: 571 AAESVVLDMRKKGFKPNETSYSLLL 595
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH---- 93
++N+G K D+ +++ F + + + E+L+ G+ PN+VT LI L+
Sbjct: 648 QLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVG 707
Query: 94 ----------NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
++ + G P +++N VI+ C G + +A+ +L M +G P ++
Sbjct: 708 DCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFN 767
Query: 144 TLI 146
T +
Sbjct: 768 TFM 770
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA +++ M NG P T+ EA E++ + G P+
Sbjct: 738 FCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPN 797
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
TY V+DG+ K + E M+ +++ E ++ + +L L + I
Sbjct: 798 ELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQSLKKLASCI 843
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+KV M +G P++ TY+IL +A E+ ++ +K D+Y YT +++
Sbjct: 416 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 475
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ ++ +L +GV PNVV T+N +I LC
Sbjct: 476 GMCKAGKVDDGWDLFCSLSLKGVKPNVV------------------TYNTMISGLCSKRL 517
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +A LL M E G +P+ Y+TLI+
Sbjct: 518 LQEAYALLKKMKEDGPLPNSGTYNTLIR 545
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A ++ M GY P++ T + L +A ++ + G +P
Sbjct: 91 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 150
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G +++E + L++ ++RG PN+VT ++L
Sbjct: 151 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 210
Query: 94 NVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ I + FN +I +LC +D AL L M G P+ Y +LI L
Sbjct: 211 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 267
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + ++ G++P+V TY++++ C GR ++ +LL++ IE+ + PN+VT L
Sbjct: 240 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 299
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++I P T+N+++ C ++DKA + M
Sbjct: 300 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 359
Query: 137 PSRTLYDTLIK 147
P Y+TLIK
Sbjct: 360 PDVVTYNTLIK 370
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ D M P++ TY L +A +M + + PD
Sbjct: 302 FVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 361
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIH----------LH 93
V TY ++ GFCK R + EL E RG+ + VT L H
Sbjct: 362 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 421
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
++ G P +T++ ++ LC GK++KAL
Sbjct: 422 QMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 452
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + M G PNV TY+ L +A ++L ++ + P++ T+ A++
Sbjct: 240 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 299
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH-----------I 101
D F K G+ E +L ++ I+R + P++ T L H+ +D
Sbjct: 300 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 359
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I+ C +++ L M G + Y TLI+ L
Sbjct: 360 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 407
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+++ ++M P+V TY L + E+ + + GL D
Sbjct: 337 FCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 396
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TYT ++ G G + ++ + + GV P+++T I L + + G + + +
Sbjct: 397 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 456
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I+ +C GK+D L + G P+ Y+T+I L
Sbjct: 457 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 512
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+YTY +++ FC+ + + + LL + ++ G P++VTL L N
Sbjct: 82 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 141
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++G+ P TITF +I L K +A+ L+ M + G P+ Y ++ L
Sbjct: 142 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 197
>gi|226530647|ref|NP_001146846.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
gi|194699540|gb|ACF83854.1| unknown [Zea mays]
gi|195604202|gb|ACG23931.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
gi|414886441|tpg|DAA62455.1| TPA: peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
Length = 401
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K A ++D M G + YT + EAY +L ++ G+ PD+
Sbjct: 198 CRKAQVRTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCLMRGRGVSPDI 257
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
Y V+ G C+ GR + +++ + ++ G TPN VT +L +
Sbjct: 258 VHYNTVIVGMCREGRPLDACKVVVDMMDNGCTPNAVTYGTVVNGLCVSGLYDKAEAYLVD 317
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G +P F++VI+ C VGK+++A ++ M + G +P + ++I+
Sbjct: 318 MVGKGLVPHFSVFHSVIRGCCTVGKVEEAAQIMSRMLDLGVVPHVESWSSVIR 370
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 29/136 (21%)
Query: 25 PNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+ TY IL A +L + + G+ D YT V++ C+ + E L
Sbjct: 185 PDADTYRILTQSLCRKAQVRTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRL 244
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L RGV+P++V +N VI +C G+ A ++ M ++
Sbjct: 245 LCLMRGRGVSPDIVH------------------YNTVIVGMCREGRPLDACKVVVDMMDN 286
Query: 134 GKIPSRTLYDTLIKKL 149
G P+ Y T++ L
Sbjct: 287 GCTPNAVTYGTVVNGL 302
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
+ + +++ + PD TY + C+ + LL+E + RG+ +
Sbjct: 171 SLSLFHRLRSLHVSPDADTYRILTQSLCRKAQVRTAATLLDEMLHRGIPAD--------- 221
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + V+ ALC ++ +A LL LM G P Y+T+I
Sbjct: 222 ---------PLAYTTVLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVI 264
>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 536
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPDVYTYTAV 57
+A +++ M G P++ TY L +A EM +VK+ + PDV TYT++
Sbjct: 224 KALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSM 283
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGH 100
+ G+CK G+ E LL++ + G+ P VT L + +I G
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF ++I C VG++ + L M G P+ Y LI L
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINAL 392
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----EAYEMLM------NVKNDGLKPD 50
YC EA ++D M G +P T+ +L +A EML + + G PD
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
V T+T+++DG+C+VG+ ++ L E RG+ PN T L N +
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406
Query: 97 -----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
DI IP+ +N VI C GK+++A +++ M + P + + LI
Sbjct: 407 QLASKDI--IPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----TL 89
A +M +K+DG+ P+ ++ F + G+ + LL ++ E VV TL
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181
Query: 90 IHLHNVIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+ L V D + T TFN +I+ LCGVGK +KAL LL +M G P
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDI 241
Query: 140 TLYDTLIK 147
Y+TLI+
Sbjct: 242 VTYNTLIQ 249
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN+N +AR+++ + P Y + EA ++ ++ KPD
Sbjct: 393 CNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDK 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
T+T ++ G C GR E + + ++ + G +P+ +T+ L
Sbjct: 453 ITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSL 493
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K+ A + + M + G+ P+ TYT L EAY++L +K G PD+
Sbjct: 228 CRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI 287
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHL----------HN 94
Y V+ GFC+ GR+++ +++++ G PN+V+ L HL
Sbjct: 288 VHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEE 347
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P + +++ C VG+I++A +L EH + P + + ++ ++
Sbjct: 348 MLSKGFSPHFAVIHALVKGFCNVGRIEEACGVLTKSLEHREAPHKDTWMIIVPQI 402
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A KVID M NG PN+ +Y L EA + + + + G P
Sbjct: 297 FCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEMLSKGFSPH 356
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
A++ GFC VGR E +L +++E P+ T +
Sbjct: 357 FAVIHALVKGFCNVGRIEEACGVLTKSLEHREAPHKDTWM 396
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-- 92
A+++ + G+ PD +Y +M FC G + L N+ +R V P++ + L
Sbjct: 166 AFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQ 225
Query: 93 ---------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++++ G +P + T+ ++ +LC K+ +A LL M G P
Sbjct: 226 ALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNP 285
Query: 138 SRTLYDTLI 146
Y+T+I
Sbjct: 286 DIVHYNTVI 294
>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
Length = 536
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPDVYTYTAV 57
+A +++ M G P++ TY L +A EM +VK+ + PDV TYT++
Sbjct: 224 KALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSM 283
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGH 100
+ G+CK G+ E LL++ + G+ P VT L + +I G
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF ++I C VG++ + L M G P+ Y LI L
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINAL 392
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----EAYEMLM------NVKNDGLKPD 50
YC EA ++D M G +P T+ +L +A EML + + G PD
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
V T+T+++DG+C+VG+ ++ L E RG+ PN T L N +
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406
Query: 97 -----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
DI IP+ +N VI C GK+++A +++ M + P + + LI
Sbjct: 407 QLASKDI--IPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----TL 89
A +M +K+DG+ P+ ++ F + G+ + LL ++ E VV TL
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181
Query: 90 IHLHNVIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+ L V D + T TFN +I+ LCGVGK +KAL LL +M G P
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDI 241
Query: 140 TLYDTLIK 147
Y+TLI+
Sbjct: 242 VTYNTLIQ 249
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN+N +AR+++ + P Y + EA ++ ++ KPD
Sbjct: 393 CNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDK 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
T+T ++ G C GR E + + ++ + G +P+ +T+ L
Sbjct: 453 ITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSL 493
>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
Length = 410
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D EAR+V D M G PN TYT L + + + ++ G++P++
Sbjct: 49 CKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNL 108
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
YTY ++ +C+ G L +E RG+ NVV+ L ++D+
Sbjct: 109 YTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDM 168
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P ITFN ++ GK+ AL M G PS Y+ LI
Sbjct: 169 MRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A + + M + G P TYTIL +A+E+L ++ GL+ D
Sbjct: 223 FCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVD 282
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLH 93
+TY ++ C G + +L E+GV P+ V L +
Sbjct: 283 AHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIM 342
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G IP + ++ I+ LC K +A LL M G S ++ L+
Sbjct: 343 EMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAGLQTSESICQALL 395
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +F AR + D M G NV +Y L +A ++L ++ +G +P
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPS 177
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ T+ ++DG+ K G+ + + N+ G P+ V T+N +
Sbjct: 178 IITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAV------------------TYNML 219
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I C + +A L M E G P++ Y LI ++
Sbjct: 220 IAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVIDIGHI-- 101
DV TA+++G CK G E + +E G+ PN VT L+H H + G
Sbjct: 37 DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T+N +I C G+ ++A L M G + + Y+TLI L
Sbjct: 97 EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGL 153
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA++ + + G N YT + A+ ++ + +G PD
Sbjct: 330 CKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDA 389
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH--------------N 94
+ Y++++DG C+ + E + LLN+ IE GV N V LI H
Sbjct: 390 HMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDR 449
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P +T+ I++ C G+++ A ++ M +HG P+ T Y+TLIK
Sbjct: 450 MAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIK 502
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC F A ++ M G TY L EA + + DG PD
Sbjct: 119 YCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPD 178
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ Y+ ++ G C GR+ E + LL +A+ +G PNV LI L IDI
Sbjct: 179 SHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFK 238
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G +P T+ +I C GK+++A++L M E G P+ Y TLI+
Sbjct: 239 GMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQ 292
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ G+ PNV Y L A ++ +++ G P+V
Sbjct: 190 CGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNV 249
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TYT ++ GFCK G+ M L + IE G+ PNVV TLI LH+
Sbjct: 250 RTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHS 309
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P T +I ALC G+I++A L + + G ++ +Y ++I L
Sbjct: 310 MEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDAL 364
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A + M + G PNV TYT L A+ +L +++ GL P+
Sbjct: 259 FCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPN 318
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+T ++D CK GR E + L +++G+ N + + ++
Sbjct: 319 EWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVN------------------QVIYTSM 360
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I ALC GK D A L+ + G +P +Y +LI L
Sbjct: 361 IDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGL 399
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A ++ M D+G PN+TTY L +A+ L N+ ++G KP+
Sbjct: 469 YCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPN 528
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHIPRTITFNN 109
+YT ++ K N +L+ ++I ++ L L VI + + ++
Sbjct: 529 DESYTVLLGLLLK---KNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDC 585
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I+ L V ++++A L M PS +Y +I+
Sbjct: 586 FIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIE 623
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
+ + D M G P+V TYT+ +A M++ + + G++P++ TY ++ G
Sbjct: 444 KMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKG 503
Query: 61 FCKVGRSNEVMELLNEAIERGVTPN 85
+ +G ++ L I+ G PN
Sbjct: 504 YANLGLVSQAFSSLKNMIDNGCKPN 528
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 33/137 (24%)
Query: 26 NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
N+ TYT L A L ++ GL PD + YT+ + G+C+ G L
Sbjct: 73 NLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLF 132
Query: 75 NEAIERGV--TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+RG TP T+ ++Q LCG G + +A+ + M+
Sbjct: 133 LLMPQRGCARTP--------------------FTYAALLQGLCGAGMVREAMAVFAGMWP 172
Query: 133 HGKIPSRTLYDTLIKKL 149
G P +Y ++ L
Sbjct: 173 DGCAPDSHVYSIMVHGL 189
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
AR + D M G P V T+ L A LM G+ PDVYTY A
Sbjct: 263 ARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLM--AKAGVAPDVYTYGAF 320
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH----NVIDIGHIPRT------ 104
M G CK GR + +E+ E ERGV PN V TLI H NV + R
Sbjct: 321 MQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGI 380
Query: 105 ----ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +N + LC V + A ++ M +G P + Y TLI
Sbjct: 381 KTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLI 426
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A +++ ++N+GLKPD TYT ++DGFCK G + ME+ E + GV + VT L +
Sbjct: 403 ANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLIS 462
Query: 95 -----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+++ G P T+ VI A C + LL M G+ P
Sbjct: 463 GLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKP 522
Query: 138 SRTLYDTLI 146
Y+ ++
Sbjct: 523 GVVTYNVVM 531
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
++ +++ M + G P+ TTYT++ +++L ++N G KP V TY VM
Sbjct: 472 DSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVM 531
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
+GFC +G+ LLN + GV P+ +T +N++ GH
Sbjct: 532 NGFCILGQMKNADMLLNAMLNIGVCPDDIT----YNILLDGH 569
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A ++ M D G + TYT L ++ +L + GL+PD
Sbjct: 429 FCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPD 488
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT V+D FCK +LL E +G P VV T+N V
Sbjct: 489 NTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVV------------------TYNVV 530
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ C +G++ A +LL M G P Y+ L+
Sbjct: 531 MNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILL 566
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
++ EAY + + + G+ P+ + +M + G+ + +E + RGV P VVT
Sbjct: 224 SVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFN 283
Query: 91 HLHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L + + G P T+ +Q LC G+I A+ + M E
Sbjct: 284 TLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRER 343
Query: 134 GKIPSRTLYDTLI 146
G P+ ++ TLI
Sbjct: 344 GVNPNTVVFTTLI 356
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMNVK-NDGLKPD 50
+C +D K++ M + G P V TY + ++ +ML+N N G+ PD
Sbjct: 499 FCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPD 558
Query: 51 VYTYTAVMDGFCKVGRSNEVMEL 73
TY ++DG CK G+ + EL
Sbjct: 559 DITYNILLDGHCKHGKVRDAEEL 581
>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
salviifolia]
Length = 431
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+ +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G K + ++ EL +E + +G+ PN VT L
Sbjct: 212 VYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLI 324
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ ++ GLKPD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPD 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G + E I+ + + V LI L
Sbjct: 317 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLR 376
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 377 EMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA +V M D G P + TY L +A ++ ++ G P+
Sbjct: 301 CRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNT 360
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y+ +DG CKVG+ NE E +++ERG P+ +T+N +I
Sbjct: 361 MIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPD------------------NVTYNALI 402
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+ L G ++D+A L M E G I R+L
Sbjct: 403 RGLFGANRMDEAHRLYREMGERGYIADRSL 432
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
+C A ++ M GY P+ +TY +L AY++ ++++ G PD
Sbjct: 194 HCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPD 253
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIE-------RGVTPNVV-----------TLIHL 92
TY +++ G C GR E L E +E G+ ++ L
Sbjct: 254 ENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASKVEEALEVT 313
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G IP T+N +I ++DKAL L +M E G P+ +Y T I L
Sbjct: 314 AGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYSTFIDGL 370
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNV-KNDGLK 48
C CN + A + M G+ P+ TY I EA + V + +
Sbjct: 228 CLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAL 287
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHL 92
D Y +++G C+ + E +E+ +++G P + T + L
Sbjct: 288 LDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQL 347
Query: 93 HNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V++ G P T+ ++ I LC VGKI++A E G +P Y+ LI+ L
Sbjct: 348 FRVMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGL 405
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A KV D M + PN+ YT L AY + + + G P
Sbjct: 160 CKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSA 219
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRTIT---- 106
TY ++ C GRS ++ + RG P+ T L + G I
Sbjct: 220 STYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKE 279
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N +I+ LC K+++AL + M + G IP+ Y+ LI
Sbjct: 280 VLEGEKALLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALI 332
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 29/170 (17%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
DF K D +G P+V Y + EA E++ + + PD T
Sbjct: 93 SGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSV-PDGMT 151
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH--------------NVI 96
YTA++ CK R+++ M++ + +E+ + PN+ +L+ H +I
Sbjct: 152 YTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMI 211
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+ P T+ +++ LC G+ A + M G +P Y +LI
Sbjct: 212 QRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLI 261
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 33/145 (22%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M ++G P+ +Y +L +A ML + +G PDV T ++D FC++ R
Sbjct: 1 MLEDGVVPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKR 60
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
EV EL E GV + + +N +++AL G D
Sbjct: 61 VGEVCELFQELESNGVAVGM------------------LAYNAILKALMCSGDFDGGFKF 102
Query: 127 LFLMYEHGKIPS----RTLYDTLIK 147
+ G +P +T+ D LIK
Sbjct: 103 SDIAVGDGSLPHVLAYKTMLDCLIK 127
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 62/202 (30%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK---------- 48
+AR ++ M GY P+V T +L E E+ ++++G+
Sbjct: 28 QARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAIL 87
Query: 49 -------------------------PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
P V Y ++D K G++ E E++ E I++ V
Sbjct: 88 KALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSVP 147
Query: 84 PN-----VVTLIHLHNVIDIGH-----------IPRTITFNNVIQALCGVGKIDKALLLL 127
+++++ HN D +P + +++ A C K+D A L
Sbjct: 148 DGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLF 207
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
M + G PS + Y L++ L
Sbjct: 208 VEMIQRGYGPSASTYGLLLRCL 229
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH-PNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C EA +++ M + G P+V TY+ + +AY +L ++ G PD
Sbjct: 341 CKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPD 400
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYTA++D FCKVGR +E EL ERG +VV +N +
Sbjct: 401 VVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVV------------------AYNIL 442
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ C K+D+A+ ++ M G P+ T++ L
Sbjct: 443 IRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGL 481
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A ++ M G P + T+ L +A ++ + + +KPD
Sbjct: 62 FCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPD 121
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+ YT V+ CK+ + + ++ G P+ VT L+H
Sbjct: 122 AFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFE 181
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ GH P +T+ V+ C G+ID+AL L+ + G+ PS +LY TLI L
Sbjct: 182 EMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 237
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C NK D A + M +G P+ TYT+L + +++ + + G P
Sbjct: 133 CKINKLDL--AASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSP 190
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH---LHNVID------ 97
++ TY V++G+CK GR ++ + L+ G +P+ TLI H+ D
Sbjct: 191 ELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF 250
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + I + + I LC GK+D+A + M E G P Y+ +I L
Sbjct: 251 EMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSL 305
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
EAY + + +PD +TY ++ GFCK + + + LL E G+TP +VT L
Sbjct: 35 EAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLI 94
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H +ID+ P + VI LC + K+D A M + G +
Sbjct: 95 RKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCL 154
Query: 137 PSRTLYDTLIKKL 149
P + Y L+ L
Sbjct: 155 PDKVTYTVLVHSL 167
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+ V M + G P+ +Y ++ EA E++ P V
Sbjct: 271 CKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGV 330
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVT-----------------LIHLH 93
T ++DG CK R E +L +E G P+VVT + L
Sbjct: 331 PVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQ 390
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G +P +T+ +I A C VG++D+A L M+E G Y+ LI+
Sbjct: 391 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIR 444
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EAR++ M + G +V Y IL EA M+ + G++P+
Sbjct: 411 FCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPN 470
Query: 51 VYTYTAVMDGFCKVGRSNE---VMELLN 75
V + + ++DG CK R E +ME +N
Sbjct: 471 VVSLSTIVDGLCKESRVEEARLLMEKMN 498
>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 43/175 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-------EMLMNVKND----GLKPD 50
YC K + EAR+++D M + G+ P + TY I+ A ++++++K GL PD
Sbjct: 256 YCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPD 315
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHN------ 94
VYT+T+++ GF + R ++ ++ + I GV PN +T L L N
Sbjct: 316 VYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHC 375
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
I +G T+ N++I GK++ A R ++DT+++K
Sbjct: 376 FAIKMGIARETLVGNSLIDMYSKCGKLEAA---------------RHVFDTILEK 415
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
L+ DVYT+ +++ G+C+ G + EL E V PNVV T
Sbjct: 413 LEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVV------------------T 454
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL-YDTLIKKLDQ 151
+N +I G D+A+ L +M + G + T +++LI Q
Sbjct: 455 WNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQ 500
>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Cucumis sativus]
Length = 1463
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 43/175 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-------EMLMNVKND----GLKPD 50
YC K + EAR+++D M + G+ P + TY I+ A ++++++K GL PD
Sbjct: 256 YCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPD 315
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------LIHLHN------ 94
VYT+T+++ GF + R ++ ++ + I GV PN +T L L N
Sbjct: 316 VYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHC 375
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
I +G T+ N++I GK++ A R ++DT+++K
Sbjct: 376 FAIKMGIARETLVGNSLIDMYSKCGKLEAA---------------RHVFDTILEK 415
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
L+ DVYT+ +++ G+C+ G + EL E V PNVV T
Sbjct: 413 LEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVV------------------T 454
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL-YDTLIKKLDQ 151
+N +I G D+A+ L +M + G + T +++LI Q
Sbjct: 455 WNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQ 500
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V++ M P+V TYTIL A+ +L + G PD
Sbjct: 247 FCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 306
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YT+++DG CK G E +L+ E R + L ++ I +P T+N V
Sbjct: 307 VIAYTSLVDGLCKSGEIEEAHKLVKEMSAREI---------LAEMVSINMVPPLFTYNIV 357
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ L G I KA+ L+ + G +P Y+TLI L
Sbjct: 358 LGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGL 396
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 31/149 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C D EA +++D M G P+V TY ++EA E+L K PD+
Sbjct: 181 CKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEIL---KTMSCSPDL 237
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
T+ ++DGFCK G +E+L E + P+V+T L N
Sbjct: 238 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 297
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKA 123
++ G+IP I + +++ LC G+I++A
Sbjct: 298 IVRQGYIPDVIAYTSLVDGLCKSGEIEEA 326
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIH 91
+A ++ N+++ + PD++TY V+ G CK G + ELL E I RG P++VT
Sbjct: 115 QAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNT 174
Query: 92 LHN--------------VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
L N ++D G P IT+N++I ALC G++ +A +L M
Sbjct: 175 LINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM 231
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 37/173 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL--------------------EAYEMLMNVKNDGLKPDVYT 53
+++ + GY P+V YT L A E+L + + + P ++T
Sbjct: 294 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFT 353
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVI 96
Y V+ G K G ++ + L+++ + RG P+VVT L +
Sbjct: 354 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA 413
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G P +T +V+ LC VG++D A L+ M P+ +Y +LI L
Sbjct: 414 SLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGL 466
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 31/151 (20%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
F KV + +G PN+ T+ IL A E L + + PDVY + +
Sbjct: 44 FRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFL 103
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ G K G ++ ++L V P++ T+N VI LC
Sbjct: 104 IHGLFKDGNPDQAVKLFENMESSRVNPDI------------------FTYNTVISGLCKS 145
Query: 118 GKIDKALLLLFLMYEHG--KIPSRTLYDTLI 146
G ++KA LL M G P Y+TLI
Sbjct: 146 GNLEKARELLEEMIRRGGKSAPDIVTYNTLI 176
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL----------EAYEMLMNVKNDGLKPDV 51
C N EA + D M G PN VT +++ +A+ +++ + P+V
Sbjct: 397 CKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNV 456
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIH 91
YT+++DG CK R ++ +L+ +GV + +V++IH
Sbjct: 457 VVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIH 503
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLKPD 50
C +A +++ M G P++ TY L +A EM +VK+ G PD
Sbjct: 217 CGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPD 276
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLH------- 93
V TYT+++ G+CK G+ E LL++ + G+ P VT +H
Sbjct: 277 VVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRG 336
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P +TF ++I C VG++++ L M G P+ Y LI L ++
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKE 395
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 32/175 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA ++D M G +P T+ +L A E+ + + G PD
Sbjct: 287 YCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPD 346
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
V T+T+++DG+C+VG+ N+ L E RG+ PN T L N +
Sbjct: 347 VVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLG 406
Query: 97 -----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
DI IP+ +N VI C GK+++A++++ M + P + + LI
Sbjct: 407 QLASKDI--IPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILI 459
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----TL 89
A +M +K+DG+ P+ ++ F + G+ + LL ++ E VV TL
Sbjct: 122 AGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVEGCCMVVNSLLNTL 181
Query: 90 IHLHNVIDIGHIPR----------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+ L V D + T TFN +I+ LCGVGK +KA+ LL M G +P
Sbjct: 182 VKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDI 241
Query: 140 TLYDTLIK 147
Y+TLIK
Sbjct: 242 VTYNTLIK 249
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +N +AR+++ + P Y + EA ++ ++ KPD
Sbjct: 393 CKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDK 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
T+T ++ G C GR E + + ++ + G +P+ +T+ L
Sbjct: 453 ITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSL 493
>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
Length = 472
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P++ TYTIL EA +L + G KPD Y Y +M G+C + + +E + +
Sbjct: 237 PDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGV 296
Query: 74 LNEAIERGVTPNVV---TLI--------------HLHNVIDIGHIPRTITFNNVIQALCG 116
+ E GV P++V TLI L + ++GH P +T+ +++ LC
Sbjct: 297 YKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGLCR 356
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G AL LL M G P+ Y+TL+ L
Sbjct: 357 EGNALGALALLEEMEAKGCSPNSCTYNTLLHGL 389
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 42/140 (30%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
EARK +D M + G+ PD TYT++M+G C+ G +
Sbjct: 327 EARKFLDIMAEMGHF------------------------PDAVTYTSLMNGLCREGNALG 362
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
+ LL E +G +PN + T+N ++ LC + +++ + L +
Sbjct: 363 ALALLEEMEAKGCSPN------------------SCTYNTLLHGLCKLRMLERGIELYGV 404
Query: 130 MYEHGKIPSRTLYDTLIKKL 149
M G + Y T ++ L
Sbjct: 405 MKSGGMKLEKASYATFVRAL 424
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNVIDIGH--- 100
LKPD+ TYT ++D C E LL E G P+ T++ + ++D G
Sbjct: 235 LKPDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAI 294
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I L G++ +A L +M E G P Y +L+ L
Sbjct: 295 GVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGL 354
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 29/180 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C +D + ++ M +G+ P+ T I A E++ + P
Sbjct: 142 CKSPNSDLSAVHQTLNLMVTHGFPPDRVTTDIAVRSLCSAGREEHAIELVKELSLKHSPP 201
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTL-IHLHNVI----------- 96
D +TY ++ CK + V ++E + P++VT I + NV
Sbjct: 202 DSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDLVTYTILIDNVCNGKNLREATRL 261
Query: 97 -----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ G P +N +++ C + K +A+ + M E G P Y+TLI L +
Sbjct: 262 LEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYKKMKEEGVEPDLVTYNTLIFGLSK 321
>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
Length = 554
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D M +G+ P++ TY IL A +L +++ G++P V +T ++DG
Sbjct: 355 RLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGL 414
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRT 104
+ G+ ++E ++ G TP+VV + + + G +P
Sbjct: 415 SRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNV 474
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I+ C GK +A LL M G P+ +Y TL+ L
Sbjct: 475 FTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 519
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 27 VTTYTILE-AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
V Y +++ YE ++ DG PDV TY VM ++G+++ + LL+E ++ G +P+
Sbjct: 312 VKQYKLIDWVYEQMLE---DGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPD 368
Query: 86 VVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ T L+H L+++ ++G P I F +I L GK++ +
Sbjct: 369 LYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMD 428
Query: 129 LMYEHGKIPSRTLYDTLI 146
+ G P Y +I
Sbjct: 429 ETVKVGCTPDVVCYTVMI 446
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 29/148 (19%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++ID M +GY T+ +L + E + K +P ++Y A++
Sbjct: 250 RLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSL 309
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
V + + + + +E G TP+V +T+N V+ A +GK D
Sbjct: 310 LGVKQYKLIDWVYEQMLEDGFTPDV------------------LTYNIVMFANFRLGKTD 351
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LL M + G P Y+ L+ L
Sbjct: 352 RLYRLLDEMVKDGFSPDLYTYNILLHHL 379
>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Brachypodium distachyon]
Length = 886
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C K+D A + M + G PN +Y+ + A E+ + G+
Sbjct: 416 CCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAW 475
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ YT+TA+++GFCK + +E L N+ E + PN +TFN
Sbjct: 476 NTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPN------------------EVTFNA 517
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
VI+ C VG I KA L M G P Y +LI L
Sbjct: 518 VIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGL 557
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F EA ++++ M D G PN TY IL +A ML ++ G++ V
Sbjct: 348 CKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTV 407
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN- 94
Y Y ++++ CK + M L+E +E G+TPN + + LH
Sbjct: 408 YPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRK 467
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ + G T TF +I C K+D+A L M E P+ ++ +I+
Sbjct: 468 MAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIE 520
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHL 92
EA+ + + + P+++ Y A+++ CK G +E L+NE ++G+ PN VT I +
Sbjct: 320 EAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILI 379
Query: 93 HNVIDIGHIPRTIT----------------FNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H++ G + + +N++I C +D A+ L M E G
Sbjct: 380 HSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLT 439
Query: 137 PSRTLYDTLIKKLDQQ 152
P+ Y +I L ++
Sbjct: 440 PNAASYSPVIAGLCRK 455
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
I EA +++ +G PD +Y+ V+ CK G NE +EL NE + +GV P++V
Sbjct: 772 IQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGVKPDIVA 828
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 28/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMNVKNDGLKPDVY 52
C A + M + + PN T+ LE + L G ++
Sbjct: 698 CKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQGFLANIV 757
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
+ ++ GFCKVG+ E ++L++ + E G P+ I+++ VI
Sbjct: 758 SVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDC------------------ISYSTVIH 799
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G I++A+ L M G P Y+ LI+
Sbjct: 800 ELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIR 834
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 30/162 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPD 50
Y + + +A D M +G+ PN TYT L + E+L + P+
Sbjct: 662 YSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPN 721
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YT+ +D F G N+ T L+ + G + ++ N +
Sbjct: 722 SYTFNCFLDYFATEG-------------------NLETAKDLYFAMLQGFLANIVSVNTL 762
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ C VG+I +A+ L+ E+G P Y T+I +L ++
Sbjct: 763 IKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKK 804
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C EA +I +NG+ P+ +Y+ I EA E+ + G+KPD
Sbjct: 766 FCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGVKPD 825
Query: 51 VYTYTAVMDGFCKV-GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG 99
+ Y ++ +C + G S++ + + + +++GV PN H H + +G
Sbjct: 826 IVAYN-ILIRWCNIHGESDKCLGIYIDMVKKGVQPN----WHTHRALFVG 870
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
+C EA ++ + M ++ PN T+ ++E Y ++ +++ GL PD
Sbjct: 487 FCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPD 546
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHIPRT----- 104
YTY +++ G C +++ E + + N +L LH G +
Sbjct: 547 NYTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWN 606
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+F ++ A +K+ +L M E G P + +I ++
Sbjct: 607 EMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKE 665
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 7 DFFEARKVIDYMFDNG-------YHPNVTTYTILE----AYEMLMNVKNDGLKPDVYTYT 55
F AR + D M +G Y + Y + A ++ ++++G K Y
Sbjct: 177 QFALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRNLDGAKGLVARMQDEGDKVSAVPYN 236
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDI 98
++ G CK R E +++ N + RGV + VT L ++ +
Sbjct: 237 VLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMARL 296
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P + ++ L G++++A L + E +P+ Y+ L+ +
Sbjct: 297 GFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNALLNNM 347
>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 870
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+K FEA+ +++ M G HPN T L EA EML + + D
Sbjct: 408 YCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLD 467
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT------PNVVTLIHLHNVIDIGHIPRT 104
T V++G C+ G + E+++E G P + +HNV ++P
Sbjct: 468 TVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVST--NVPDV 525
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+ +I LC VGK+++A M P YDT +
Sbjct: 526 ITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFV 567
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 28/155 (18%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDVYTYTA 56
E R V+D M +NG PN+ +Y I L+A ++ + ++G+ PD TYT
Sbjct: 344 LLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTT 403
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIG 99
++ G+C G+ E +LNE I +G PN T L N + +
Sbjct: 404 LLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKS 463
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ T+T N V+ LC G+++KA ++ M+ G
Sbjct: 464 YQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDG 498
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + EAR +++ M G ++ +Y +LE +L + +G++P+
Sbjct: 303 FCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPN 362
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+Y+Y VMDG C+ + L++ + GV P+ V TL+H L+
Sbjct: 363 IYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILN 422
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+I G P T T N ++ +L G+ +A +L M E
Sbjct: 423 EMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNE 461
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A +V+ M NG + TY I E Y ++ ++ G+ PD
Sbjct: 570 FCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPD 629
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTL-IHLHNVIDIGHIPRTITFN 108
+ TY +++ C+ G++ + LL+E +++G V+PNV + I + G
Sbjct: 630 ICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELF 689
Query: 109 NVIQALCG---------------VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+V ++CG GK+ A L E + +Y+ LI KL
Sbjct: 690 DVALSVCGHKEALYSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKL 745
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 67/218 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGL--- 47
+C ++ EA K+++ M + G P+V T+ + EA + +++ DG
Sbjct: 229 FCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGL 288
Query: 48 -KPDVYTYTAVMDGFCKVG--------------------------------RSNEVME-- 72
KP+V T+ ++ GFC+ G R+ +++E
Sbjct: 289 PKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGR 348
Query: 73 -LLNEAIERGVTPNVVT-------LIHLHNVIDI----------GHIPRTITFNNVIQAL 114
+L+E +E G+ PN+ + L H ++D G P T+T+ ++
Sbjct: 349 SVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGY 408
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C GK+ +A +L M G P+ +TL+ L ++
Sbjct: 409 CSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKE 446
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 30/165 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G +P T+ +L A E+ + G +P+ +T ++ GFC+ GR
Sbjct: 142 MIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGR 201
Query: 67 SNEVMELLNEAIERGVTPNVV-TLIH--------------LHNVIDIGHIPRTITFNNVI 111
+ + +E ++ + V V TL+ + + + G +P +TFN+ I
Sbjct: 202 TKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRI 261
Query: 112 QALCGVGKIDKALLLLFLMYEHGKI----PSRTLYDTLIKKLDQQ 152
ALC GK+ +A + M G++ P+ ++ ++K Q+
Sbjct: 262 SALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQE 306
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKND-GLKPDVYT 53
C N AR++ D M + G PN T IL + L V G +
Sbjct: 162 CESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEFVDGKMGGNVNRVV 221
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI----- 101
Y ++ FCK ++E +L+ E+G+ P+VVT L V + I
Sbjct: 222 YNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQ 281
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +TFN +++ C G +++A L+ M + G S Y+T +
Sbjct: 282 MDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWL 335
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
C + +A +V+ M+ +G + + + NV + PDV TYT +++G C
Sbjct: 479 CRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTN--VPDVITYTTLINGLC 536
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
KVG+ E + E + + +LH P ++T++ + C GKI
Sbjct: 537 KVGKLEEAKKKFIEMMAK----------NLH--------PDSVTYDTFVLNFCKQGKISS 578
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLI 146
AL +L M +G + Y++LI
Sbjct: 579 ALRVLKDMERNGCSKTLQTYNSLI 602
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 30/163 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C+ F A K++D M G +P+V T+ IL EAY ++ + G KP
Sbjct: 255 FCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKP 314
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+ +Y A+M+G+C G E ++ ++ +ER PNV I++
Sbjct: 315 DIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNV------------------ISYCT 356
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I C V +D+A++LL M+ +P Y+ L+ L +
Sbjct: 357 LINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKS 399
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA++V D M + PNV +Y L EA +L + N L PD
Sbjct: 326 YCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPD 385
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
TY ++DG K GRS +L+ G +++T L
Sbjct: 386 TVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQ 445
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++I+IG P T+N ++ LC G++ A + L+ G P+ Y+ +I L ++
Sbjct: 446 HIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKE 504
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 19/114 (16%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTLIHL 92
EA + + +G++ DVY+Y +++ GFC VGR ++LL+E + RG V P+V
Sbjct: 228 EACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVY----- 282
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TFN +I LC +G++ +A ++ +M + G P Y+ L+
Sbjct: 283 -------------TFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALM 323
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 29/147 (19%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+++ M +G ++ TY +L +A + ++ G+ P++ TY ++DG C
Sbjct: 408 LVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLC 467
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
K GR E+ +G PN+ T+N +I LC G +D+
Sbjct: 468 KSGRLKYAKEIFQLLSAKGCQPNIR------------------TYNIMIHGLCKEGFLDE 509
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKL 149
A LL+ M + +P+ +DT+++ +
Sbjct: 510 AEALLYKMVNNNYLPNYITFDTIVRAI 536
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 29/139 (20%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P++ T++IL A+ +L N+ G + DV T +M G C GR E + L
Sbjct: 103 PSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSL 162
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L+E ++RG + + + +I LC +GK A+ + M +
Sbjct: 163 LHEYVDRGFRFD------------------EVCYGTIINGLCKIGKTRDAIQMFPKMKKI 204
Query: 134 GKIPSRTLYDTLIKKLDQQ 152
P+ +Y+T+I L +Q
Sbjct: 205 RVYPNLIMYNTVIDGLCKQ 223
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +A+++I + +NG H ++ ++ +++A + N GL PD
Sbjct: 477 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 536
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y +MDG+C VG+ + + + + + G+ PNVV + +
Sbjct: 537 AVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV------------------GYGTL 578
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C +G+ID+ L L M + G PS LY +I L
Sbjct: 579 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 617
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 35/159 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C EAR V D M G +P+V +Y I+ + +++++ DG+
Sbjct: 338 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG---DGIA 394
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD YT+ ++ + G ++ M + NE + GV P+VVT +
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT------------------YR 436
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI ALC +GK+D A+ M + G P + Y+ LI+
Sbjct: 437 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQ 475
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + + D M +G P+ T+ +L +A + +++ G+KPD
Sbjct: 372 YATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 431
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------------------------- 85
V TY V+ C++G+ ++ ME N+ I++GV P+
Sbjct: 432 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 491
Query: 86 -----------------VVTLIHLHNVID----------IGHIPRTITFNNVIQALCGVG 118
+ L L V+D +G P + +N ++ C VG
Sbjct: 492 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG 551
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K++KAL + M G P+ Y TL+
Sbjct: 552 KMEKALRVFDAMVSAGIEPNVVGYGTLV 579
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M + PN TY L EA + ++ + PDV
Sbjct: 268 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T + +M CK G+ E ++ + +G P+V + L+ + ++ D+
Sbjct: 328 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDL 387
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I+A G +DKA+++ M +HG P Y T+I L
Sbjct: 388 MLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 442
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 31/138 (22%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGL--KPDVYTYTAVMDGFCKVGRSN 68
G P+V +Y+IL +A ++L + G P+V Y V+DGF K G N
Sbjct: 180 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 239
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ +L E ++RG+ P++V T+N+V+ ALC +DKA L
Sbjct: 240 KACDLFKEMVQRGIPPDLV------------------TYNSVVHALCKARAMDKAEAFLR 281
Query: 129 LMYEHGKIPSRTLYDTLI 146
M +P+ Y+ LI
Sbjct: 282 QMVNKRVLPNNWTYNNLI 299
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 19/103 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL+ ++ +++GFC+ R++E +++L LH ++G +P
Sbjct: 144 GLRVNIIIANHLLEGFCEAKRTDEALDIL-----------------LHRTPELGCVPDVF 186
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLI 146
+++ ++++LC GK +A LL +M E G + P+ Y+T+I
Sbjct: 187 SYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 229
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +V D M G PNV Y L E + + G+KP
Sbjct: 547 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPS 606
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
Y+ ++DG + GR+ +E E G+ ++ T
Sbjct: 607 TILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICT 644
>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K +A +++ M G P++ TY IL EA ++L + G PD
Sbjct: 438 YGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPD 497
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V T+T ++ GF G E L E + P+VVT L H
Sbjct: 498 VVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFH 557
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI----KKL 149
++D G I +N++I C +G ID A L+ +M EHG +P+ + L+ KK
Sbjct: 558 KMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEKKC 617
Query: 150 DQQP 153
+ P
Sbjct: 618 VENP 621
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVID--------YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYT 53
YC EA V++ ++F++ T +L+A ++ ++ GL PD ++
Sbjct: 301 YCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFS 360
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVI 96
YT +M G+CKV + ++ L + ++RG+ P+V T L +I
Sbjct: 361 YTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMI 420
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P +++N ++ G + KA LL +M G P Y+ LI L
Sbjct: 421 TEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGL 473
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ + K++ M G P+V YTI+ EA +L + G+ D
Sbjct: 231 YCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLD 290
Query: 51 VYTYTAVMDGFCKVGRSNEVMELL------------NEAIERGVTP-NVVTLIHL-HNVI 96
+ ++V+DG+CKVG+S E M++L N I + T N++ + ++
Sbjct: 291 SVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMC 350
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++G IP ++ ++ C V I AL L M + G PS Y LI
Sbjct: 351 EMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLI 400
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 18 MFDNGY--HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+F +GY N+ T +++LM +K G+KPDV YT V+D CK+ E +L
Sbjct: 226 LFISGYCSQGNIDT-----GWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILF 280
Query: 76 EAIERGVTPNVVTLI-------------HLHNVIDIGHI-PRTITFNNVIQALCGVGKID 121
+ + GV + V++ +V+++ ++ P FN+ I LC G +
Sbjct: 281 KMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNML 340
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLI 146
KA + M E G IP Y T++
Sbjct: 341 KAAKVFQDMCEMGLIPDCFSYTTMM 365
>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
Length = 676
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D + K ++ M + G+ P++ TY L +A+ + + G+ PD+
Sbjct: 314 CKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDL 373
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+YTA+M+G CK GR E +L + + RG++P++V TLIH LH+
Sbjct: 374 VSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHD 433
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P + T +++ GK AL L+ + G S+ +Y LI L
Sbjct: 434 MIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVAL 488
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K +A + M+ G P++ +YT L EA+++ + + GL PD
Sbjct: 348 YCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPD 407
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------------LIHLHNVI 96
+ TY ++ G+CK G+ E LL++ I G++P+ T L L+ V+
Sbjct: 408 IVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVV 467
Query: 97 DIGHIPRTIT---FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +I+ ++ +I ALC + A LL M + G +Y+ LIK Q
Sbjct: 468 ELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQ 525
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G+ P V T L +E+ ++ G+ P++YT+ + CK G
Sbjct: 259 MLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGD 318
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ +V + L + E G P++V T+N +I + C G++D A L
Sbjct: 319 TGKVNKFLEKMEEEGFDPDIV------------------TYNTLINSYCRKGRLDDAFYL 360
Query: 127 LFLMYEHGKIPSRTLYDTLIKKL 149
+MY G +P Y L+ L
Sbjct: 361 YKIMYRRGVVPDLVSYTALMNGL 383
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +N F A+ +++ M +G+ + Y I EA + M + + +KP++
Sbjct: 489 CRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNL 548
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIG------ 99
TY AV+ ++ RS E L+ E + G P++ L N ID
Sbjct: 549 ATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGYCRENDIDKAESLLSF 608
Query: 100 -----HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
I T +FN +I+ G I ++L + +M + G +P+
Sbjct: 609 XAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPN 652
>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY--EMLMNVKND--------GLKPDV 51
CN ++ +++ M ++ PNV + T+++A E ++ + +D G++PDV
Sbjct: 336 CNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDV 395
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYTA+MDG C +E +++ + + +G PNV + LI+ L
Sbjct: 396 VTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ 455
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G I T+T+N +I LC VG++ A+ L M G+IP Y L+ L
Sbjct: 456 MSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 510
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ A V+ + G P+ TT+ L EA + +G +PD
Sbjct: 195 FCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPD 254
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY +M+G CKVG ++ + LL +++ PNV+ T+I
Sbjct: 255 VVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFS 314
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+I G P T+N++I ALC + + LL M +P+ ++ T++ L ++
Sbjct: 315 EMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKE 373
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +++ EA KV D M G PNV +Y IL +A +L + GL D
Sbjct: 405 HCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIAD 464
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHIPR 103
TY ++ G C VGR + L +E + G P++VT L H++ + + +
Sbjct: 465 TVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLK 524
Query: 104 TI----------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +N I +C G+++ A L + G P Y+ +I L
Sbjct: 525 AIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 580
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ A + M +G P++ TY IL EA +L ++ L D+
Sbjct: 476 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADI 535
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +DG C+ G +L + +G+ P+V T+N +I
Sbjct: 536 LVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVR------------------TYNIMI 577
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G +D+A L M E+G +Y+T+I+
Sbjct: 578 HGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIR 613
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G+ PDVYT +++ FC + R +L + ++ G P+ T
Sbjct: 180 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEA 239
Query: 90 IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+HL + I G P +T+ ++ LC VG A+ LL M + P+ Y+T+I
Sbjct: 240 LHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDS 299
Query: 149 L--DQQ 152
L D+Q
Sbjct: 300 LCKDRQ 305
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 30/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML-MNVKNDGLKP 49
+ K +A K+ + M PN+ TY+ L EA +ML + ++ D L P
Sbjct: 333 FVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL-P 391
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------L 92
+V TY +++GFCK R ++ MEL E +RG+ N V TLIH
Sbjct: 392 NVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 451
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +T+N ++ LC GK+ KA+++ + P Y+ +I+ +
Sbjct: 452 KQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 508
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ N +A ++D M + GY P+ T+T L EA ++ + G +PD
Sbjct: 158 FCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPD 217
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY AV++G CK G ++ + LLN+ + NVV T+I H + +++
Sbjct: 218 LVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFT 277
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT++++I LC G+ A LL M E P+ + LI
Sbjct: 278 EMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALI 330
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 29/162 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN + +A +++ M + +PN+ T++ L +A ++ + + P
Sbjct: 297 CLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP 356
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+++TY+++++GFC + R E ++L I + PNVV T+N
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVV------------------TYNT 398
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I C ++DK + L M + G + + Y TLI Q
Sbjct: 399 LINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQ 440
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M NV Y+ + +A + ++N G++P+V
Sbjct: 229 CKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNV 288
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY++++ C GR ++ LL++ IER + PN+VT L
Sbjct: 289 ITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEE 348
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I P T++++I C + ++ +A +L LM +P+ Y+TLI
Sbjct: 349 MIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLI 400
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---LHN----- 94
G +PD+ T ++++GFC R ++ + L+++ +E G P+ V TLIH LHN
Sbjct: 143 GYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEA 202
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIK 147
++ G P +T+ V+ LC G D AL LL M E KI + +Y T+I
Sbjct: 203 VALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKM-EAAKIEANVVIYSTVID 261
Query: 148 KL 149
L
Sbjct: 262 SL 263
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C+C + A ++ M GY P++ T I +A ++ + G KP
Sbjct: 122 CFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKP 181
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G +++E + L++ ++RG P++VT ++L
Sbjct: 182 DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLL 241
Query: 94 NVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ I + ++ VI +LC D AL L M G P+ Y +LI L
Sbjct: 242 NKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL 298
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 17/76 (22%)
Query: 8 FFEARK------VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
FF+AR V M G HPN+ TY IL +A + ++ ++PD
Sbjct: 438 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 497
Query: 51 VYTYTAVMDGFCKVGR 66
+YTY +++G CK G+
Sbjct: 498 IYTYNIMIEGMCKAGK 513
>gi|293334435|ref|NP_001169564.1| uncharacterized protein LOC100383443 [Zea mays]
gi|224030115|gb|ACN34133.1| unknown [Zea mays]
gi|414872643|tpg|DAA51200.1| TPA: hypothetical protein ZEAMMB73_501808 [Zea mays]
Length = 424
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 42/190 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL----------------------EAYEM 38
C F +AR ++D M G P+ TYT+L EA +
Sbjct: 197 CRNGRFSDARFLLDQMERPGARCKPDTYTYTVLISWYCRIGVGTGCRKAARRRIYEAGRL 256
Query: 39 LMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNV 95
+ GL+PDV TY +++G CK R E+ +E + +G TPN VT I ++V
Sbjct: 257 FRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEMFDEMLRKGCTPNRVTYNSFIRYYSV 316
Query: 96 ID--------------IGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
++ GH + + T+ VI +LC ++ +A L M E G +P
Sbjct: 317 VNQVDKAVEWMREMVARGHGMASSSTYTPVIHSLCESRRVTEARQFLIDMAESGHVPREH 376
Query: 141 LYDTLIKKLD 150
Y + +D
Sbjct: 377 TYKLVKAAID 386
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G PNV TY+ L +A +L ++ + PDV
Sbjct: 267 CKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH----- 100
+T++A++D F K G+ E +L +E ++R + P++VT L H+ +D
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P ++++ +I+ C ++D+ + L M + G + + Y TLI+ L Q
Sbjct: 387 MVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQ 443
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++D MF GY PN T+ L EA ++ + G +PD
Sbjct: 161 YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPD 220
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY V++G CK G ++ LLN+ + + P V+ T+I H+ + +++
Sbjct: 221 LVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFK 280
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T++++I LC G+ A LL M E P + LI
Sbjct: 281 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 333
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA +M + + PD
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V +Y+ ++ GFCK R +E MEL E +RG+ N T+T+ +
Sbjct: 396 VVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGN------------------TVTYTTL 437
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IQ L G D A + M G P+ Y+TL+ L
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTY 54
N EA +ID M G P++ TY ++ A+ +L ++ L+P V Y
Sbjct: 200 NKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIY 259
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
T ++DG CK ++ + L E +G+ PNVVT LI L ++I+
Sbjct: 260 TTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TF+ +I A GK+ +A L M + PS Y +LI
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+++ M +G PN+ TY L +A + ++ ++P +YTY +++
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ + +L +GV P+VV +N +I C G
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVV------------------AYNTMISGFCRKGS 551
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++A L M E G +P+ Y+TLI+
Sbjct: 552 KEEADALFKEMKEDGTLPNSGCYNTLIR 579
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+++ ++M P+V +Y+ L E E+ + GL +
Sbjct: 371 FCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGN 430
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT ++ G + G + E+ E + GV PN+ +T+N +
Sbjct: 431 TVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNI------------------MTYNTL 472
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC GK++KA+++ + P+ Y+ +I+ +
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 43/167 (25%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDG 60
C+C ++ A V+ M GY PN+ T +++++G
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIV------------------------TLSSLLNG 160
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---LHN-----------VIDIGHIPR 103
+C R +E + L+++ G PN V TLIH LHN ++ G P
Sbjct: 161 YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPD 220
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
+T+ V+ LC G D A +LL M E GK+ P +Y T+I L
Sbjct: 221 LVTYGVVVNGLCKRGDTDLAFILLNKM-EQGKLEPGVLIYTTIIDGL 266
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V +Y+ + P + TY I+ + +++ N+ G+KPDV
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
Y ++ GFC+ G E L E E G PN
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------ 94
++N G+ + YTY+ +++ FC+ + + +L + ++ G PN+VTL L N
Sbjct: 106 QMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 95 -------VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
++D G+ P T+TFN +I L K +A+ L+ M G P Y
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYG 225
Query: 144 TLIKKL 149
++ L
Sbjct: 226 VVVNGL 231
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+ V D + G P+V ++ L E + + ++ G++PDVYTY+ +++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIP 102
G CK + ++ EL +E ++ G+ PN VT L ++ P
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSP 274
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 29/133 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C ++ +A ++ D M DNG PN T+T ++ A E+ + + L PD+
Sbjct: 217 CKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDL 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ G CK G + +L++E +G+ P+ IT+ +I
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD------------------KITYTTLI 318
Query: 112 QALCGVGKIDKAL 124
C G ++ AL
Sbjct: 319 DGSCKEGDLETAL 331
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H V I A + + GL+P V ++ +M+G+ K+G +E L N
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ A+ + M P Y+TLI
Sbjct: 257 VVLAMEIYKQMLSQSLSPDLITYNTLI 283
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 28/165 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A +++ + GLKPD
Sbjct: 251 HCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G +E I+ + + V LI L
Sbjct: 311 KITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
++ +G P T+ +I C G + LL M G +PS
Sbjct: 371 EMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPS 415
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A+ +ID M G P+ TYT L
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKP++ TYT +++ FCK G +LL E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 407 MQRDGYVPSVVT 418
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + F EA+K + M P+ Y T + Y ++L +++ G P
Sbjct: 525 CKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPST 584
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ GF + +S E+M+L++E E+G++PNV +T+N++I
Sbjct: 585 RTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNV------------------MTYNSLI 626
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ C G ++KA+ LL M ++ +P+ T +D LIK
Sbjct: 627 KSFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIK 662
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+K + A +++D M G PN TY +L EA +L + G D
Sbjct: 396 YCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLD 455
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-----NVVTLIHLHNVIDIGHIPRTI 105
++DG C+ R + M++++ E G N + + I +P I
Sbjct: 456 TAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQI 515
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T++ +I ALC G+ D+A L M P +YDT I
Sbjct: 516 TYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFI 556
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 30/162 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C+ EAR ++D M G+ V +Y + EA E+L + ++G++P+
Sbjct: 291 FCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPN 350
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVT---LIH--------------L 92
YTY ++ G CK G++ + + N I GV +P+VVT L+H L
Sbjct: 351 SYTYNIIVSGLCKEGKAFDARRVEN-FIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRIL 409
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ G P + T+N ++Q+L G+ +A LL M E G
Sbjct: 410 DEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKG 451
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A KV+ M G +P+ TY +L E +++ +K G+ P+
Sbjct: 559 YCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPN 618
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
V TY +++ FC+ G N+ M LL+E ++ + PN+ +
Sbjct: 619 VMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSF 657
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------- 91
PD TY+ ++ CK GR +E + L E I + ++P+ V T IH
Sbjct: 512 PDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKV 571
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
L ++ G P T T+N +I+ K ++ + L+ M E G P+ Y++LIK Q
Sbjct: 572 LRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQ 631
Query: 152 Q 152
Q
Sbjct: 632 Q 632
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-------- 101
V+ GFCK G E L+ +G+ PNVVT L V+D I
Sbjct: 213 VVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDW 272
Query: 102 ------PRTITFNNVIQALCGVGKIDKALLLLFLM 130
P +TF+ ++ C G +D+A +L+ +M
Sbjct: 273 QHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIM 307
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C EAR V D M G +P+V +YTI+ + +++++ DG+
Sbjct: 337 CKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLG---DGIA 393
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD+YT+ ++ + G ++ M + NE + GV P+VVT +
Sbjct: 394 PDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVT------------------YM 435
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI ALC +GK+D A+ M + G +P + Y LI+
Sbjct: 436 TVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQ 474
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
+C +A+++I + +NG ++ + +++A + N GL PD
Sbjct: 476 FCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 535
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y +MDG+C VG+ + + + + + G+ PNVV + +
Sbjct: 536 AVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV------------------GYGTL 577
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C +G+ID+ L L M + G PS LY+ +I L
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 31/138 (22%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDGFCKVGRSN 68
G P+V +Y IL +A ++L + G PDV Y V+DGF K G N
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 238
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ +L E ++RG+ P++V T+++V+ ALC +DKA L
Sbjct: 239 KACDLFKEMVQRGIPPDLV------------------TYSSVVHALCKARAMDKAEAFLR 280
Query: 129 LMYEHGKIPSRTLYDTLI 146
M G +P Y+ LI
Sbjct: 281 QMVNKGVLPDNWTYNNLI 298
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + + D M +G P++ T+ +L +A + +++ G+KP
Sbjct: 371 YATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPH 430
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------------------------- 85
V TY V+ C++G+ ++ ME N+ I++GV P+
Sbjct: 431 VVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELIS 490
Query: 86 -----------------VVTLIHLHNVID----------IGHIPRTITFNNVIQALCGVG 118
+ L L V+D +G P + +N ++ C VG
Sbjct: 491 EIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG 550
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K++KAL + M G P+ Y TL+
Sbjct: 551 KMEKALRVFDAMVSAGIEPNVVGYGTLV 578
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M + G P+ TY L EA + ++ + PDV
Sbjct: 267 CKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDV 326
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
+M CK G+ E ++ + +G P+V + L+ + ++ D+
Sbjct: 327 VALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDL 386
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TFN +I+A G +DKA+++ M +HG P Y T+I L
Sbjct: 387 MLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAAL 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 19/103 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL+ D + ++ GFC+ R++E +++L LH ++G +P
Sbjct: 143 GLRVDAIIASHLLKGFCEAKRTDEALDIL-----------------LHRTPELGCVPDVF 185
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLI 146
++N ++++LC GK +A LL +M E G + P Y+T+I
Sbjct: 186 SYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVI 228
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 40/182 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +V D M G PNV Y L E + + G+KP
Sbjct: 546 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPS 605
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---------------------- 88
Y ++DG + GR+ +E E G+ N T
Sbjct: 606 TILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFK 665
Query: 89 -LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L ++ IDI IT N +I + ++++A L + G +P Y +I
Sbjct: 666 ELRAMNVKIDI------ITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMIT 719
Query: 148 KL 149
L
Sbjct: 720 NL 721
>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
Length = 688
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+++ M NG P+ TYT L EA ++ N+ +DGL P
Sbjct: 496 CKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSA 555
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
T+T ++ +C+ G + +E GV PN +T LIH H
Sbjct: 556 VTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHE 615
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+++ G + T+ +I C VG + A+ F M+++G P + L+K D
Sbjct: 616 MLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGFD 671
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 78/211 (36%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D EAR + + M + G PNV TYTIL A E + + GL+PD
Sbjct: 390 YCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPD 449
Query: 51 VY-----------------------------------TYTAVMDGFCKVGRSNEVMELLN 75
+ TY ++ G CK G + EL
Sbjct: 450 CFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQM 509
Query: 76 EAIERGVTPNVVT---LIHLH--------------NVIDIGHIPRTITFNNVIQALCGVG 118
+ + G+ P+ +T LIH H N+I G +P +TF +I A C G
Sbjct: 510 KMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRG 569
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A M E G P+ Y+ LI L
Sbjct: 570 NLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 600
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
D A ++ + + G + TY IL +A E+ M + ++GL+PD TY
Sbjct: 464 GDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITY 523
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
T ++ C+ G E ++ N I G+ P+ VT +IH +++
Sbjct: 524 TCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLE 583
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I ALC +G+ A M E G + ++ Y LI
Sbjct: 584 EGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLI 632
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 32/150 (21%)
Query: 12 RKVIDY---MFDNGYHPNVTTYT----------ILEAYEM-LMNVKNDGLKPDVYTYTAV 57
+KV D M + G P V TY ++EA ++ ++ GL PDV TY ++
Sbjct: 292 KKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSL 351
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
++G+CK G E + L + G+ P V +T+N I C +
Sbjct: 352 LNGYCKAGNLKEALLLFGDLRRAGLAPTV------------------LTYNIRIDGYCRL 393
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G +++A +L M E G +P+ Y L+K
Sbjct: 394 GDLEEARILKEEMGEQGCLPNVCTYTILMK 423
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDG 46
YC + + + A M + G PN TY +L +EML G
Sbjct: 565 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEML----ERG 620
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
L + YTYT ++DG CKVG + M E + G+ P+ +T L D GH+ TI
Sbjct: 621 LVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGFD-GHVHHTIE 679
Query: 107 FNNVI 111
+ +++
Sbjct: 680 YLDIV 684
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-------VTPNVV----------- 87
G++P + TY ++D F K GR ++V LL E RG VT NVV
Sbjct: 199 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 258
Query: 88 TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L + + + T+N +I L G + K L M G +P+ Y+ +I
Sbjct: 259 EAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIH 318
Query: 148 KLDQQ 152
L Q
Sbjct: 319 GLLQS 323
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 63/209 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC EA K+ M G+ PNV TYT L +AY +L +K +G+
Sbjct: 430 CYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSC 489
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELL----------------------------------- 74
+ YTY +++G C VGR EV E+L
Sbjct: 490 NDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVY 549
Query: 75 NEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ +G+ PN+VT L L++V G P +N++I C
Sbjct: 550 QQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQE 609
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + AL +L LM + G +P+ ++Y++ I
Sbjct: 610 GNMSHALQVLVLMLKDGLLPNISVYNSFI 638
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A +V+ M +G PN++ Y EA + +G+ D
Sbjct: 606 FCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLD 665
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-------- 101
TYT ++DGF K G ++L +E + +G P+ +T L H + G I
Sbjct: 666 TATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLD 725
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + +N +I GK+ +A L M E +P T YD L+
Sbjct: 726 EMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 37/175 (21%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N + +A + M D+G P+ TY IL EA + + G+KP +
Sbjct: 364 NDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIV 422
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI------- 105
TY +++ +C G +E ++L E +G TPNVVT L GHI +
Sbjct: 423 TYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMK----GHINKAAFDKAYAL 478
Query: 106 --------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N +I LC VG++ + +L G +P+ Y+++I
Sbjct: 479 LAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSII 533
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
A +L +++ G P +T+ +V+D K GR E + + +E + G +VV TL+
Sbjct: 230 RALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLM 289
Query: 91 H-------LHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H + +DI G +P +T+ +I+ G +KA L M +HG +
Sbjct: 290 HGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLL 349
Query: 137 PSRTLYDTLIKKL 149
PS ++ +IK L
Sbjct: 350 PSTNEFNMVIKGL 362
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + +A + + +G P TYT+L +AYE+ +++ GL P
Sbjct: 292 YCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPS 351
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHL--------------H 93
+ V+ G + + L E + G+ P+ T LIH
Sbjct: 352 TNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWE 410
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ + G P +T+++++ C G +D+A+ L M G P+ Y TL+K
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMK 464
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C + +A I M + +G+ P+ T+ L A E++ + +G P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYTY +V+ G CK+G E +E+L++ I R +PN T+T+N
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN------------------TVTYNT 370
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC ++++A L ++ G +P +++LI+ L
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ + M G P+ TY +L EA ML ++ G V TY ++D
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
GFCK ++ E E+ +E GV+ N V TLI + +I G P
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N+++ C G I KA ++ M +G P Y TLI L
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V+T+ +L A ML ++ + GL PD T+T VM G+ + G +
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 71 MELLNEAIERGVT-PNVVTLIHLHNVIDIGHI-----------------PRTITFNNVIQ 112
+ + + +E G + NV + +H G + P TFN ++
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G + A+ ++ +M + G P Y+++I L
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 29/137 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N EA ++ D M +G N TY L +A +++ + +G KPD
Sbjct: 480 FCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPD 539
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY +++ FC+ G + +++ G P++V T+ +
Sbjct: 540 KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIV------------------TYGTL 581
Query: 111 IQALCGVGKIDKALLLL 127
I LC G+++ A LL
Sbjct: 582 ISGLCKAGRVEVASKLL 598
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 29/148 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D +A ++ M NG P++ TY L A ++L +++ G+
Sbjct: 550 FCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLT 609
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ Y V+ G + ++ E + L E +E+ P P +++ V
Sbjct: 610 PHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP-----------------PDAVSYRIV 652
Query: 111 IQALC-GVGKIDKALLLLFLMYEHGKIP 137
+ LC G G I +A+ L + E G +P
Sbjct: 653 FRGLCNGGGPIREAVDFLVELLEKGFVP 680
Score = 35.8 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDI-GHIPR 103
GLKPD + Y N ++ LL V N + L+ + H + + G P
Sbjct: 149 GLKPDTHFY-------------NRMLNLL-------VDGNSLKLVEISHAKMSVWGIKPD 188
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TFN +I+ALC ++ A+L+L M +G +P + T+++
Sbjct: 189 VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQ 232
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F +AR+++ ++ + G PN+ TY L +A E+L ++N G +PDV +Y
Sbjct: 652 FSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNT 711
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
V+ GFC+ G E + +L+E +G+ P +V T+N + G
Sbjct: 712 VIKGFCRKGLMQEAIGVLSEMTTKGIQPTIV------------------TYNTFLSGYAG 753
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D+A ++ M EH PS Y L+
Sbjct: 754 MELFDEANEVIRFMIEHNCRPSELTYKILV 783
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EARK + + NGY P TY + EA +L ++++ PD TY +
Sbjct: 304 EARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELA 363
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVI-DIGHI 101
+ + G +E M +++ +GV PN +T + L +++ D+G
Sbjct: 364 ATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCA 423
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+N+V+ L + + + +L M +G P+R ++T++
Sbjct: 424 PNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTML 468
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDVYTYTAVM 58
E VID M G PN TYT +++AY + +K+ G P+VYTY +V+
Sbjct: 374 EGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVL 433
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------HNVID--------IGHI 101
K R+ +V+++L E G PN T + HN ++ G
Sbjct: 434 AMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFE 493
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P TFN +I A G + + M + G P T Y+ L+ L ++
Sbjct: 494 PDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARR 544
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA + L +K +G KP TY +++ F K G E + +L E + P+ VT L
Sbjct: 304 EARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELA 363
Query: 94 -------------NVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
VID G +P IT+ VI A G+ D AL L LM + G
Sbjct: 364 ATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCA 423
Query: 137 PSRTLYDTLIKKLDQQ 152
P+ Y++++ L ++
Sbjct: 424 PNVYTYNSVLAMLGKK 439
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 29/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDVYTYTAVMD 59
A K+ D + Y +V YT IL +Y ++ +K GL P + TY ++D
Sbjct: 199 ASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLD 258
Query: 60 GFCKVGRS-NEVMELLNEAIERGVT------PNVVTLIHLHNVIDI-----------GHI 101
+ K+GRS + ++ELL+E +G+ V++ ++D G+
Sbjct: 259 VYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYK 318
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
P T+T+N+++Q G +AL +L M ++ P Y+ L
Sbjct: 319 PGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNEL 362
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA V+ M G P + TY EA E++ + +P
Sbjct: 716 FCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPS 775
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
TY ++DG+CK G+ E M+ +++ E ++ + ++ L + I
Sbjct: 776 ELTYKILVDGYCKAGKYEEAMDFVSKIKELDISFDDQSVKRLGSCI 821
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------- 93
G KPD+ +++ F + ++ E+L+ E G+ PN+ T L+ L+
Sbjct: 631 GYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKA 690
Query: 94 -----NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P +++N VI+ C G + +A+ +L M G P+ Y+T +
Sbjct: 691 EEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFL 748
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + + R + + + G P+V +Y+IL E Y++ +K GL
Sbjct: 561 CVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHL 620
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
DV Y V+DGFCK G+ ++ +LL E +G+ P VVT +
Sbjct: 621 DVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLF 680
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IG + ++++I VG+ID+A L+L + + G P+ ++ L+ L
Sbjct: 681 EEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDAL 737
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K M G P+ TYT L EA E+ + + P VY Y ++
Sbjct: 292 AWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIM 351
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVIDIGHIPR 103
G+ G+ +E LL +G P+V+ + +H+ + P
Sbjct: 352 GYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPN 411
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I LC G+++ AL + M E G P+ + +I +L
Sbjct: 412 LTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRL 457
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ + G PN T+ L EA N+KN P+ TY+ ++
Sbjct: 710 EAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMI 769
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G C + + N+ E ++G+ PN IT+ +I L G
Sbjct: 770 NGLCMIRKFNKAFVFWQEMQKQGLKPN------------------NITYTTMIAGLAKAG 811
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ +A L G +P Y+ +I+ L
Sbjct: 812 NVMEARGLFDRFKASGGVPDSACYNAMIEGLSS 844
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 31/154 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++D M N + ++ Y + A++ +K GL PD TYT ++
Sbjct: 257 ALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIG 316
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH-IPRTITFNNVIQALCGVG 118
CK R +E +EL E +D+ +P +N +I G
Sbjct: 317 VLCKARRLDEAVELFEE-------------------LDLNRSVPCVYAYNTMIMGYGSAG 357
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
K D+A LL G IPS Y+ ++ L ++
Sbjct: 358 KFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRK 391
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ G P+V Y + EA + ++ D P+
Sbjct: 353 YGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA-APN 411
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
+ TY ++D CK G +++ + E G+ PN++T L + + I
Sbjct: 412 LTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFL 471
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P + TF ++I L G++D A L M + +IP+ +Y +LI+
Sbjct: 472 GLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQ 525
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 52/168 (30%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---- 89
+AY + + + P+V YT+++ F K GR + ++ E + RG +P+++ L
Sbjct: 500 DAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYM 559
Query: 90 --------------------------------IHLHNVIDIGHIPRT------------- 104
I +H ++ G T
Sbjct: 560 DCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLH 619
Query: 105 ---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +N VI C GK+DKA LL M G P+ Y +++ L
Sbjct: 620 LDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGL 667
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 31/172 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C D EA +++D M G P+V TY ++EA E+L K PD+
Sbjct: 215 CKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEIL---KTMSCSPDL 271
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
T+ ++DGFCK G +E+L E + P+V+T L N
Sbjct: 272 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 331
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G+IP I + +++ LC G+I++A L+ M G +Y +L+
Sbjct: 332 IVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLV 383
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A +V++ M P+V TYTIL A+ +L + G PD
Sbjct: 281 FCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 340
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IH-----LH 93
V YT+++DG CK G E +L+ E RG VV +H L
Sbjct: 341 VIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILA 400
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ I +P T+N V+ L G I KA+ L+ + G +P Y+TLI L
Sbjct: 401 EMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGL 456
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +AR+++ M P + TY I+ +A ++ ++ G PD
Sbjct: 386 YCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPD 445
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++DG CK R E +L +E RG PN VTL +V
Sbjct: 446 VVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTL------------------GSV 487
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC VG++D A L+ M P+ +Y +LI L
Sbjct: 488 VFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGL 526
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNG--YHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + +AR++++ M G P++ TY L EA +K G+ P
Sbjct: 143 CKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINP 202
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----LHNVIDIGHI- 101
DV T ++ G CK G E +E+L+ G P+V+T +IH V++ I
Sbjct: 203 DVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEIL 262
Query: 102 ------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TFN ++ C G + +AL +L M +P Y L+ L
Sbjct: 263 KTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGL 316
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIH 91
+A ++ N+++ +KP++ TY V+ G CK G + ELL E I +G P++VT
Sbjct: 115 QAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNT 174
Query: 92 LHNVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L N G P +T N ++ +C G +++AL +L M G
Sbjct: 175 LINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAG 234
Query: 135 KIPSRTLYDTLIKKL 149
+P Y+++I L
Sbjct: 235 PVPDVITYNSIIHAL 249
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 31/151 (20%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
F KV + +G PN+ T+ IL A E L + + PDVY + +
Sbjct: 44 FRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVL 103
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ G K G ++ ++L V P +V T+N VI LC
Sbjct: 104 IHGLFKDGNPDQAVKLFENMESSRVKPEIV------------------TYNTVISGLCKS 145
Query: 118 GKIDKALLLLFLMYEHG--KIPSRTLYDTLI 146
G ++KA LL M G P Y+TLI
Sbjct: 146 GNLEKARELLEEMIRKGGKSAPDIVTYNTLI 176
Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL----------EAYEMLMNVKNDGLKPDV 51
C N EA + D M G PN VT +++ +A+ +++ + P+V
Sbjct: 457 CKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNV 516
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
YT+++DG CK R ++ +L+ +GV
Sbjct: 517 VVYTSLIDGLCKSDRMDDACMVLDAMRGQGV 547
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C + +A I M + +G+ P+ T+ L A E++ + +G P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYTY +V+ G CK+G E +E L++ I R +PN T+T+N
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPN------------------TVTYNT 370
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC ++++A L ++ G +P +++LI+ L
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 28/167 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ + M G P+ TY +L EA ML ++ G V TY ++D
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
GFCK + E E+ +E GV+ N V TLI + +I G P
Sbjct: 479 GFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKP 538
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N+++ C G I KA ++ M +G P Y TLI L
Sbjct: 539 DKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V+T+ +L A ML ++ + GL PD T+T +M G+ + G +
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243
Query: 71 MELLNEAIERGVT-PNVVTLIHLHNVIDIGHI-----------------PRTITFNNVIQ 112
+ + + +E G + NV + +H G + P TFN ++
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G + A+ ++ +M + G P Y+++I L
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N EA ++ D M +G N TY L +A +++ + +G KPD
Sbjct: 480 FCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPD 539
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TY +++ FC+ G + +++ G P++VT + +
Sbjct: 540 KFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVT------------------YGTL 581
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC G+++ A LL + G + Y+ +I+ L
Sbjct: 582 ISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGL 620
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 30/165 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +A +++D M G P+ TY I +A +++ + ++G +PD+
Sbjct: 516 CKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDI 575
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV-------TPNVVTLIHLHNVIDIGHI--- 101
TY ++ G CK GR +LL +G+ P + L + ++
Sbjct: 576 VTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFRE 635
Query: 102 --------PRTITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIP 137
P +++ V + LC G G I +A+ L + E G +P
Sbjct: 636 MLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVP 680
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 34/154 (22%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-EAY-------EML----MNVKNDGLKPDVYTYT 55
F + RK+++ M ++G + + IL E+Y E+L + + GLKPD + Y
Sbjct: 99 FDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFY- 157
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDI-GHIPRTITFNNVIQA 113
N ++ LL V N + L+ + H + + G P TFN +I+A
Sbjct: 158 ------------NRMLNLL-------VDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKA 198
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC ++ A+L+L M +G +P + T+++
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQ 232
>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 789
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 28/150 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C K EA+ ++ M+ +P+V TYT I EA +ML + G KP+
Sbjct: 417 FCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPN 476
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+YTA+++G C G+S E E++N + E TPN +T ++H
Sbjct: 477 TVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTR 536
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+++ G P + N +IQ+LC K+ +A
Sbjct: 537 EMVEKGFFPTPVEINLLIQSLCQNQKVVEA 566
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
+C EA+K++ M+ +G PN +YT LEA EM+ + P+
Sbjct: 452 FCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPN 511
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
TY VM GF + G+ +E +L E +E+G P V + +L
Sbjct: 512 AITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLE 571
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G + F VI C +G ++ AL +L MY K P Y L L ++
Sbjct: 572 ECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKK 630
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 28/160 (17%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
D G+H + Y+ + EA +++++ + PDV TYTA++DGFC++GR +
Sbjct: 400 DKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRID 459
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHN-------------VIDIGH----IPRTITFNNVI 111
E ++L + + G PN V+ L N +I++ P IT+ V+
Sbjct: 460 EAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVM 519
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
GK+ +A L M E G P+ + LI+ L Q
Sbjct: 520 HGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQ 559
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+K ++ + G NV +T + A +L ++ PD
Sbjct: 558 CQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDA 617
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYTA+ D K GR +E EL+ + + +G+ P +TF +VI
Sbjct: 618 VTYTALFDALGKKGRLDEAAELIVKMLSKGLDPT------------------PVTFRSVI 659
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G++D L LL M + + P RT+Y+ +I+KL
Sbjct: 660 HRYCQWGRVDDMLNLLDRMVK--RKPFRTIYNHVIEKL 695
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + + + +++ M D+ P+ TY L +A L ++ G D
Sbjct: 347 CKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHID 406
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+A++ FC+ GR +E L+ + R P+VV T+ +
Sbjct: 407 KVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVV------------------TYTAI 448
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C +G+ID+A +L MY+HG P+ Y L+ L
Sbjct: 449 VDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGL 487
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 30/163 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTILE------AYEMLMNVKNDGLKPD 50
Y A +V+ M G PN+ T Y +++ A L ++ G+KPD
Sbjct: 241 YSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPD 300
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY +++ G+C + R + +EL+ +G P+ +++ V
Sbjct: 301 IVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPD------------------KVSYYTV 342
Query: 111 IQALCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLIKKLDQQ 152
+ LC KI++ L+ M + IP + Y+TLI L +
Sbjct: 343 MGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKH 385
>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
Length = 504
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D M +G P++ TY +L A +L + + G P+V +T ++DG
Sbjct: 305 RLLDEMGRDGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGL 364
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHNVIDIGHIPRT 104
+ G +E I++G P+VV +++ G +P
Sbjct: 365 GRAGNLEACKYFFDEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPNV 424
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I+ LC VG+ DKA +L M HG P+ ++Y +L+ +L
Sbjct: 425 YTYNSMIRGLCTVGEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRL 469
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V + M GY P+V TY ++ + + +L + DGL PD++TY ++
Sbjct: 271 VHEKMILEGYSPDVLTYNVVMRAKYMLGKLDQFHRLLDEMGRDGLTPDLHTYNLLLHVLG 330
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID--------------------IGHIP 102
K + + LLN + G PNV +H N+ID G P
Sbjct: 331 KGDKPLAALNLLNYMSDVGCVPNV---LHFTNLIDGLGRAGNLEACKYFFDEMIKKGCDP 387
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + +I + G+ ++A M G++P+ Y+++I+ L
Sbjct: 388 DVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPNVYTYNSMIRGL 434
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKN----DGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
F N ++ + T +E Y ++ V +G PDV TY VM +G+ ++ LL
Sbjct: 248 FRNAFNAILHTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVMRAKYMLGKLDQFHRLL 307
Query: 75 NEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGV 117
+E G+TP++ T L+H L+ + D+G +P + F N+I L
Sbjct: 308 DEMGRDGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGLGRA 367
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G ++ M + G P Y +I
Sbjct: 368 GNLEACKYFFDEMIKKGCDPDVVCYTVMI 396
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + +F A + M G P+ TY + EA +M+ ++ ++G PD
Sbjct: 346 FVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPD 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V T++ ++ G+CK GR ++ +EL +E +RG+ + +T LIH
Sbjct: 406 VVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFE 465
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ G P TITF +++ LC ++ K L +L
Sbjct: 466 EMVSSGVCPDTITFRSMLAGLCTKAELQKGLTML 499
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N EA + + + NG +V TY IL A ++ + + G+ P
Sbjct: 312 CKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPST 371
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++DGFCK R E ++++ + G +P+VVT F+ +I
Sbjct: 372 VTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVT------------------FSTLI 413
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ C G++D L L M + G + Y+ LI
Sbjct: 414 KGYCKAGRVDDGLELFSEMCQRGLVADTITYNALI 448
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A ++ M ++ NV Y+ + +A + + G+ P+V
Sbjct: 56 CKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNV 115
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHI--------- 101
TY ++DG+C G+ ++ +LL + IER + P+VVT L N + G +
Sbjct: 116 LTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYRE 175
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TIT++++I C +++ A + LM G P +TLI
Sbjct: 176 MLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLI 227
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 40/174 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ + +A +++ M + P+V T++ L A E+ + + P
Sbjct: 125 YCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPT 184
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------HNVIDI 98
TY++++DGFCK R + + + + +G +P+++TL L H +
Sbjct: 185 TITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQV 244
Query: 99 GHI----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
G++ P +T N ++ LC GK++KA L +F +++ K+
Sbjct: 245 GNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKA-LEMFKVFQKSKM 297
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A+ + M NG P++ T L +A EM + + D
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLD 300
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------DI-- 98
T +++G CK + +E +L N GV +VVT L V DI
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYL 360
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G IP T+T+N+++ C ++++A ++ M G P + TLIK
Sbjct: 361 EMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIK 414
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + G NV T+T +L+A ++ + +G +PD TY +++G CK+G
Sbjct: 1 MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60
Query: 67 SNEVMELLNEAIERGVTPNVVTL-------------IHLHNVI----DIGHIPRTITFNN 109
+ + +L + E + NVV I N+ + G P +T+N
Sbjct: 61 TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I C GK A LL M E P + LI
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALI 157
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +V T+T +M+G C+ GR + + L++ +E G H P +
Sbjct: 5 GCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEG------------------HQPDAV 46
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ ++ +C +G AL +L M E + +Y ++ +L
Sbjct: 47 TYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRL 90
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F A V M DNG PN+ TY L E ML + G KP+
Sbjct: 249 CKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNC 308
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY ++++ CK GR E + I +G+ P+V T L +H+++++
Sbjct: 309 CTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNL 368
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN A G IDKA+ + M + G P Y LI L
Sbjct: 369 MVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDAL 423
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E +++ M NG PN + I +A ++ ++ GL PD
Sbjct: 353 YATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPD 412
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+Y A++D CK+GR ++ N+ I GVTP++V L
Sbjct: 413 AVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFF 472
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++++G P + FN ++ LC G++ + L+ + G P Y+TLI
Sbjct: 473 EMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLI 525
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 28/150 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDV 51
C + E ++++D + G P+V +Y TI EA ++L + + GLKPD
Sbjct: 494 CKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDS 553
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
++Y ++ G+CK GR + + + G+TP VV T++H N
Sbjct: 554 FSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLN 613
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
+I+ G T+N ++ LC +D+A+
Sbjct: 614 MINSGTKWDIYTYNIILNGLCKSNCVDEAI 643
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 31/175 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH---PNVTTYTIL-----------EAYEMLMNVKNDGLK 48
CN+ EA +++ M D+ PNV +Y+ + + Y + + + + G+
Sbjct: 176 CNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIP 235
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
PDV TYT V+DG CK + + + I+ GV PN+ T LIH
Sbjct: 236 PDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRM 295
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + G P T+ +++ LC G+ +A M G PS T Y ++
Sbjct: 296 LEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIML 350
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPD 50
YC A M NG P V TY TIL EA E+ +N+ N G K D
Sbjct: 563 YCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWD 622
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-- 98
+YTY +++G CK +E +++ +G+ N++T + + +D+
Sbjct: 623 IYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 682
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + +T+ V++ L G +++ L M ++G P+ + + L+++L
Sbjct: 683 AIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 738
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + + + ++ M + G HPN+ + ++E ++ +++ G++PDV
Sbjct: 459 CTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDV 518
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y ++DG C G +E +LL ++ +G P + ++N ++
Sbjct: 519 ISYNTLIDGHCLAGTIDEASKLL------------------EGMVSVGLKPDSFSYNTLL 560
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C G+ID A M +G P Y+T++ L Q
Sbjct: 561 HGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQ 600
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 36/180 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + E ++++ M G PN TY L EA ++ G+KP
Sbjct: 283 YLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPS 342
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV--------------I 96
V TY ++ G+ G +E+ +LLN + G++PN H+ N+ +
Sbjct: 343 VTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNH----HIFNIFFSAYAKCGIIDKAM 398
Query: 97 DI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
DI G P +++ +I ALC +G++D A + M G P ++ +L+ L
Sbjct: 399 DIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGL 458
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + M G P+V TY TIL EA E+ +++ N + ++YTY ++
Sbjct: 809 DAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIL 868
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-------GHI 101
+G CK +E ++ +G+ N++T + + +D+ G +
Sbjct: 869 NGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLV 928
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P +T+ V + L G +++ L M + G L + L+++L Q+
Sbjct: 929 PDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQR 979
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 20/129 (15%)
Query: 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT---PNVVTLIHLHN 94
+L + G PD +Y ++ G C R+ E +ELL+ + V PNVV+ + N
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211
Query: 95 -----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
++D G P +T+ VI LC D+A + M ++G P
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271
Query: 138 SRTLYDTLI 146
+ Y+ LI
Sbjct: 272 NIDTYNCLI 280
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + ++ +M +N P+V TY++L +A ++ + + + GL P+
Sbjct: 270 YCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPN 329
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
T+T +++G C GR++ ME+ + + +GV P+V IT+N +
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDV------------------ITYNTL 371
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC VG + +A L+ M + G P + Y LI
Sbjct: 372 INGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 34/175 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C + +A K+ M D G PN T+T L E Y+ ++ G+K
Sbjct: 306 CKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR---KGVK 362
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------------- 92
PDV TY +++G CKVG E +L+ E +RG+ P+ T L
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G + F +I C G++ +A L M E G P Y +I
Sbjct: 423 RKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A ++ M G + +T ++EA L + G+KPD
Sbjct: 411 CKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT V+ GFCK G +LL E + GH+P +T+N ++
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKE------------------MQCDGHVPGVVTYNVLL 512
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G++ A +LL M G +P Y+ L++
Sbjct: 513 NGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 28/167 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + + D GY P+V + +L EA + + GL+P V ++ +++
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLIN 268
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIP 102
G+CK G ++ L +E V P+V T L N + D G +P
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+TF +I C G+ D + + M G P Y+TLI L
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y+FD N+T+ A+ + + G PDV + +M CK + NE L E
Sbjct: 195 YLFDRLMKLNLTS----PAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGE 250
Query: 77 AIERGVTPNVVTLIHLHNV------IDIGH-----------IPRTITFNNVIQALCGVGK 119
+RG+ P VV+ L N +D G P T++ +I LC G+
Sbjct: 251 IGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQ 310
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A L M + G +P+ + TLI
Sbjct: 311 LDDANKLFLEMCDRGLVPNDVTFTTLI 337
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA + + M + G P+ TYT++ +++L ++ DG P
Sbjct: 445 FCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPG 504
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
V TY +++G CK G+ LL+ + GV P+ +T +N++ GH
Sbjct: 505 VVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDIT----YNILLEGH 550
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D K++ M +G+ P V TY +L A +L + N G+ PD
Sbjct: 480 FCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPD 539
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNE 76
TY +++G CK G + +L +E
Sbjct: 540 DITYNILLEGHCKHGNREDFDKLQSE 565
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----- 88
EA ++ V +G PD T+ ++++GFC++G N+ +++++ IE+G P+V T
Sbjct: 246 EALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLI 305
Query: 89 -----LIHLHNVIDIGH-------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L I+I P T+T+N +I ALC +I+ A L ++ G +
Sbjct: 306 SGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLL 365
Query: 137 PSRTLYDTLIKKL 149
P ++TLI+ L
Sbjct: 366 PDVCTFNTLIQGL 378
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
+C + EA + + + + G+ P+ T+ +++ + + NV + G PD
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPD 297
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
VYTY +++ G CK+G + +E+L + I R +PN VT L +
Sbjct: 298 VYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLAR 357
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G +P TFN +IQ LC D A+ + M G P Y LI L
Sbjct: 358 ILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSL 413
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C +N+ A + + G P+V T+ L A EM +KN G KPD
Sbjct: 344 CKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDE 403
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------------HLHNV 95
+TY+ ++D C R E + LL E G N V TLI + +
Sbjct: 404 FTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQ 463
Query: 96 IDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ + R ++T+N +I LC ++++A L+ M G P + Y++L+
Sbjct: 464 MELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLL 515
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 76/195 (38%), Gaps = 63/195 (32%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM-------- 58
M + G +V+T+ +L A ML + N GLKPD T+T +M
Sbjct: 149 MVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGD 208
Query: 59 ---------------------------DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+GFCK GR E + + E E G +P+ VT
Sbjct: 209 LNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNS 268
Query: 92 LHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L N +I+ G P T+N++I +C +G+ +KA+ +L M
Sbjct: 269 LVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRE 328
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y+TLI L
Sbjct: 329 CSPNTVTYNTLISAL 343
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++D+M + G+ P+V TY L +A E+L + P+
Sbjct: 273 FCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPN 332
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------IHLHNVIDI------ 98
TY ++ CK +L + +G+ P+V T + L DI
Sbjct: 333 TVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFE 392
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T++ +I +LC ++ +AL+LL M G + +Y+TLI L
Sbjct: 393 EMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGL 448
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ D M G + TY L EA +++ + +GLKPD
Sbjct: 449 CKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDK 508
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY +++ FC+VG + +++ G P++ T+ +I
Sbjct: 509 FTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDI------------------FTYGTLI 550
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G++D A LL + G + + Y+ +I+ L
Sbjct: 551 GGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQAL 588
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 30/148 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D +A ++ M NG P++ TY L A ++L +V+ G+
Sbjct: 518 FCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLT 577
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ Y V+ R+ E M L E +E+ P+ +T H + V
Sbjct: 578 PHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALT----HKI--------------V 619
Query: 111 IQALC-GVGKIDKALLLLFLMYEHGKIP 137
+ LC G G I +A+ M E G +P
Sbjct: 620 FRGLCNGGGPIQEAIDFTVEMLEKGILP 647
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 27/153 (17%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKND-GLKPDVYTY 54
+ F ++ + +G PN TT+ L E +L ++N+ G KPD Y
Sbjct: 67 QSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILENELGFKPDTNFY 126
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
++ + + V L ++ + G+ V+D+ TFN +I+AL
Sbjct: 127 NIALNALVEDNKLKLVEMLHSKMVNEGI------------VLDVS------TFNVLIKAL 168
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
C ++ A+L+L M HG P + TL++
Sbjct: 169 CKAHQLRPAILMLEEMANHGLKPDEITFTTLMQ 201
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +++D M G N+ L EA ++ + + LKPD
Sbjct: 342 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+Y ++DG+C+ G ++E L ++ ++ G+ P V +T+N +
Sbjct: 402 SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTV------------------LTYNTL 443
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ LC VG D AL + LM + G P Y TL+ L
Sbjct: 444 LKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGL 482
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + EA VI M D P+ +Y L EA+ + + +G++P
Sbjct: 377 YCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPT 436
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHN--------- 94
V TY ++ G C+VG ++ +++ + ++ GV P+ V L + N
Sbjct: 437 VLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWK 496
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G ITFN +I LC +GK+ +A + M + G P Y TLI
Sbjct: 497 DILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ D M G PN+ TY L A + + GL P+V TY ++
Sbjct: 767 EAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLI 826
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG+CK+G + +L ++ IE G++P+VV T++ +I LC G
Sbjct: 827 DGYCKIGNMDAAFKLKDKMIEEGISPSVV------------------TYSALINGLCKHG 868
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I++++ LL M + G Y TL++
Sbjct: 869 DIERSMKLLNQMIKAGVDSKLIEYCTLVQ 897
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH----------- 91
G PD +TY ++ G+ G +E L +E + RG+ PN+VT LI+
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRA 803
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
H + G P +T+N +I C +G +D A L M E G PS Y LI
Sbjct: 804 QRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALING 863
Query: 149 L 149
L
Sbjct: 864 L 864
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-LKP 49
Y + D A+ V+ +M + G NV TYT+L EA ++L ++ + L P
Sbjct: 271 YVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVP 330
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
D Y ++DG+C+ G+ ++ + LL+E + G+ N+ L N
Sbjct: 331 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 390
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D P + ++N ++ C G +A L M + G P+ Y+TL+K L
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGL 447
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC ++ +A KV M P++ Y ++E ++L + GL P+
Sbjct: 552 YCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPN 611
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY A++DG+CK G ++ E E G++ N+ I + +
Sbjct: 612 IVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANI------------------IICSTM 653
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
+ L +G+ID+A LL+ M +HG P +
Sbjct: 654 VSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 685
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPDV 51
C + A+++ + G PNV TY T+++ Y + N+ +G+ P V
Sbjct: 795 CKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSV 854
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
TY+A+++G CK G M+LLN+ I+ GV ++
Sbjct: 855 VTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLI 890
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---T 88
++EA E+ +K+ G PD TY ++DG+CK + ++ ++P++ +
Sbjct: 523 MVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNS 582
Query: 89 LI-------HLHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
LI L D+ G P +T+ +I C G +DKA F M E+G
Sbjct: 583 LISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG 642
Query: 135 KIPSRTLYDTLIKKL 149
+ + T++ L
Sbjct: 643 LSANIIICSTMVSGL 657
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 26 NVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
N T+T Y+ ++ V G+ PDV+ + +++ FCK G+ +E + + GV PN
Sbjct: 204 NGETHTAHYVYQQMIRV---GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 260
Query: 86 VVTLIHLHN-VIDIGHIPRT----------------ITFNNVIQALCGVGKIDKALLLLF 128
+VT L N + +G + +T+ +I+ C K+D+A +L
Sbjct: 261 IVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLR 320
Query: 129 LMYEHGK-IPSRTLYDTLI 146
M E +P Y LI
Sbjct: 321 GMQEEAALVPDERAYGVLI 339
>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 726
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 28/142 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA++++ M G P+V TY+ + +A +M+ ++ + KP+
Sbjct: 348 FCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPN 407
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-- 98
T+TA+++G CKVG+++E ELLN++ E TP+ +T ++H L D+
Sbjct: 408 TVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVV 467
Query: 99 -----GHIPRTITFNNVIQALC 115
G P T+ N +I ALC
Sbjct: 468 QMLQKGFFPTTVEINLLIHALC 489
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 35/176 (19%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E R ++ M D G P+ TY +L EA E L + + D
Sbjct: 278 CKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVD 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID----IGHI----- 101
Y+A++ FC GR E E++ E I +G P+VVT V+D IG +
Sbjct: 338 EVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVT---YSTVVDGFCRIGELDQARK 394
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+T ++ LC VGK +A LL E PS Y ++
Sbjct: 395 MMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVM 450
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 31/163 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y A +V+ M +G P+++ + +A E ++ G++PD
Sbjct: 172 YSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPD 231
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
VYTY ++ G C R + ME++ ++ G P+ ++ + + +
Sbjct: 232 VYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQ 291
Query: 97 ----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
D G P +T+N +I L G D+A L FL GK
Sbjct: 292 RMRNDAGLFPDQVTYNVLIHGLAKHGHADEA--LEFLRESEGK 332
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 63/210 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +ARK++ +M+ N PN T+T L EA+E+L + + P
Sbjct: 383 FCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPS 442
Query: 51 VYTYTAVMDGF-----------------------------------CKVGRSNEVMELLN 75
TY+ VM GF CK + E + +
Sbjct: 443 DITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFME 502
Query: 76 EAIERGVTPNVV---TLIH-------LHNVIDI-------GHIPRTITFNNVIQALCGVG 118
+ +G T NVV T+IH L + + + P +T+ V+ AL G
Sbjct: 503 QCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKG 562
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +A L+ M G +P+ Y T+I +
Sbjct: 563 RLKEATGLVEKMLNRGVLPTPVTYRTVIHR 592
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+V+ M G + L A +L ++ DG PD+ ++
Sbjct: 146 ARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVN 205
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GR ++ +E GV P+V T +N +I+ LCG +
Sbjct: 206 VLVVAGRVDKALEFAERMRRVGVEPDVYT------------------YNCLIKGLCGARR 247
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A+ ++ +M ++G P + Y T++ L
Sbjct: 248 VVDAMEMIGVMLQNGCPPDKISYYTVMSFL 277
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + ++ +M +N P+V TY++L +A ++ + + + GL P+
Sbjct: 270 YCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPN 329
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
T+T +++G C GR++ ME+ + + +GV P+V IT+N +
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDV------------------ITYNTL 371
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC VG + +A L+ M + G P + Y LI
Sbjct: 372 INGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A ++ M G + +T ++EA L + G+KPD
Sbjct: 411 CKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT V+ GFCK G +LL E + GH+P +T+N ++
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKE------------------MQCDGHVPGVVTYNVLL 512
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC G++ A +LL M G +P Y+ L+++ Q
Sbjct: 513 NGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQ 552
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 34/175 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C + +A K+ M D G PN T+T L E Y+ ++ G+K
Sbjct: 306 CKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR---KGVK 362
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------------- 92
PDV TY +++G CKVG E +L+ E +RG+ P+ T L
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422
Query: 93 -HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G + F +I C G++ +A L M E G P Y +I
Sbjct: 423 RKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 28/167 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A + + D GY P+V + +L EA + + GL+P V ++ +++
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLIN 268
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIP 102
G+CK G ++ L +E V P+V T L N + D G +P
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+TF +I C G+ D + + M G P Y+TLI L
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y+FD N+T+ A+ + + G PDV + +M CK + NE L E
Sbjct: 195 YLFDRLMKLNLTS----PAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGE 250
Query: 77 AIERGVTPNVVTLIHLHNV------IDIGH-----------IPRTITFNNVIQALCGVGK 119
+RG+ P VV+ L N +D G P T++ +I LC G+
Sbjct: 251 IGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQ 310
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A L M + G +P+ + TLI
Sbjct: 311 LDDANKLFLEMCDRGLVPNDVTFTTLI 337
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA + + M + G P+ TYT++ +++L ++ DG P
Sbjct: 445 FCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPG 504
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V TY +++G CK G+ LL+ + GV P+ +T
Sbjct: 505 VVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDIT 542
>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
Length = 726
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 28/142 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA++++ M G P+V TY+ + +A +M+ ++ + KP+
Sbjct: 348 FCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPN 407
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-- 98
T+TA+++G CKVG+++E ELLN++ E TP+ +T ++H L D+
Sbjct: 408 TVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVV 467
Query: 99 -----GHIPRTITFNNVIQALC 115
G P T+ N +I ALC
Sbjct: 468 QMLQKGFFPTTVEINLLIHALC 489
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 35/176 (19%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E R ++ M D G P+ TY +L EA E L + + D
Sbjct: 278 CKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVD 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID----IGHI----- 101
Y+A++ FC GR E E++ E I +G P+VVT V+D IG +
Sbjct: 338 EVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVT---YSTVVDGFCRIGELDQARK 394
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+T ++ LC VGK +A LL E PS Y ++
Sbjct: 395 MMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVM 450
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 31/163 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y A +V+ M +G P+++ + +A E ++ G++PD
Sbjct: 172 YSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPD 231
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
VYTY ++ G C R + ME++ ++ G P+ ++ + + +
Sbjct: 232 VYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQ 291
Query: 97 ----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
D G P +T+N +I L G D+A L FL GK
Sbjct: 292 RMRNDAGLFPDQVTYNVLIHGLAKHGHADEA--LEFLRESEGK 332
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 63/210 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +ARK++ +M+ N PN T+T L EA+E+L + + P
Sbjct: 383 FCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPS 442
Query: 51 VYTYTAVMDGF-----------------------------------CKVGRSNEVMELLN 75
TY+ VM GF CK + E + +
Sbjct: 443 DITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFME 502
Query: 76 EAIERGVTPNVV---TLIH-------LHNVIDI-------GHIPRTITFNNVIQALCGVG 118
+ +G T NVV T+IH L + + + P +T+ V+ AL G
Sbjct: 503 QCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKG 562
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +A L+ M G +P+ Y T+I +
Sbjct: 563 RLKEATGLVEKMLNRGVLPTPVTYRTVIHR 592
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
AR+V+ M G + L A +L ++ DG PD+ ++
Sbjct: 146 ARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVN 205
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GR ++ +E GV P+V T +N +I+ LCG +
Sbjct: 206 VLVVAGRVDKALEFAERMRRVGVEPDVYT------------------YNCLIKGLCGARR 247
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A+ ++ +M ++G P + Y T++ L
Sbjct: 248 VVDAMEMIGVMLQNGCPPDKISYYTVMSFL 277
>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
Length = 607
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA ++ + M G P+V TY L E+L N+ +DG +P
Sbjct: 392 FCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPS 451
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V T+ ++ G+CK G+++E +++ E + PN T+ +N +
Sbjct: 452 VVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPN------------------TVIYNTL 493
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I LC ++D A+ L M E+ + T Y+ L+K L +
Sbjct: 494 IDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDK 535
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTY 54
N+ A ++ M D GY P+ Y +++A + ++K G K D Y
Sbjct: 326 NNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAY 385
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVID 97
++ GFC+ R +E +L E G+ P+V TL+ L N+ID
Sbjct: 386 NILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMID 445
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +TF ++ C GK D+AL + M E P+ +Y+TLI L
Sbjct: 446 DGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFL 497
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 34/158 (21%)
Query: 25 PNVTTY-TILEAY----------EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V+T+ ++L A E+ +++ +KPD+ TY +++ CK G + +++
Sbjct: 129 PDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDALKV 188
Query: 74 LNEAIERGVTPNVVTLIHLHNVID----IGHI------------------PRTITFNNVI 111
L+ G + ++ L+ V+D IG + P T+T+N +
Sbjct: 189 LDRMSSPG-SDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLA 247
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
A C VG ID A ++ M + G P+ +T++ L
Sbjct: 248 DACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGL 285
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNV 95
G P+ TY + D C+VG + +++ + GVTPNV+T+ +
Sbjct: 235 GCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAA 294
Query: 96 IDIGHIPRT---------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D RT +T++ ++ A + A+ L M + G P +Y T+I
Sbjct: 295 LDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMI 354
Query: 147 KKLDQ 151
L Q
Sbjct: 355 SGLTQ 359
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 30/156 (19%)
Query: 21 NGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
+G PN TY L A +++ ++ +G+ P+V T ++ G C+VGR
Sbjct: 234 HGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGA 293
Query: 70 VMELLNEA----IE-RGVTPNVVTLIH--------------LHNVIDIGHIPRTITFNNV 110
++ E +E RG TL+ H + D G+ P + + +
Sbjct: 294 ALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTM 353
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L G++ A + M + G R Y+ LI
Sbjct: 354 ISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILI 389
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A K+ D M +N NVTTY L +A+E++ +K + PD
Sbjct: 498 CKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEERCTPDY 557
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
T +M+ ++G + + + + E+G
Sbjct: 558 VTMDVLMEWLPEIGETERLKCFMEQRDEKG 587
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA ++ D M G PN TY L +A + + GL PD
Sbjct: 190 YCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPD 249
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV--TLI---------------HLH 93
+ Y+ ++DGFCK G +E++ L E R V P++V T+I L
Sbjct: 250 ILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLS 309
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I G P T+ ++ LC G I +AL L M E G +P Y+ L++
Sbjct: 310 RLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQ 363
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
+ GLKPDVY+Y+ ++G+CKV + +E MEL +E RGV PN V
Sbjct: 173 SKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAV---------------- 216
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T+N +I+ALC + A +L M G P Y TL+ +Q
Sbjct: 217 --TYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQ 263
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G KPDV +T ++DG C++G++ LL E G P+VVT L
Sbjct: 105 GFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKV 164
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
H ++ G P +++ I C V KID+A+ L M G +P+ Y+TLIK
Sbjct: 165 RKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKA 224
Query: 149 LDQ 151
L Q
Sbjct: 225 LCQ 227
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +A++V+ + G P+V TYT I+EA + ++ DG P
Sbjct: 296 CRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGS 355
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
+Y ++ G + ++ V++L++E +RG + VT L + +
Sbjct: 356 CSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKDFL 400
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKPDVYTYTAVM 58
+A + M D P + + L + YE ++++ + G+K +V T + ++
Sbjct: 23 DALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILI 82
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
+ FC + + + + ++RG P+VV TLI L + +G +
Sbjct: 83 NCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCV 142
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T N++++ C GKIDK + LM G P Y I
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFI 187
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K EA M + G + TYT+L +A E+ ++ G+ PD
Sbjct: 570 YCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPD 629
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------------HNVID 97
V++Y ++DGF K+G + + +E ++ G+T NV+ L ++D
Sbjct: 630 VFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLD 689
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+ +I C G + +A L M G +P +Y TL+
Sbjct: 690 EMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLV 742
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A++++D M G+ PN TY + EA+++ +K GL PD
Sbjct: 675 FCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPD 734
Query: 51 VYTYTAVMDGFCK---VGRSNEVME---------------LLNEAIERGVTPNVVTLIH- 91
+ YT ++DG C+ V R+ + E L+N + G T +I+
Sbjct: 735 SFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINR 794
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D P +T+N +I LC G ++ A L M + +P+ Y +L+ D
Sbjct: 795 LMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYD 854
Query: 151 Q 151
+
Sbjct: 855 K 855
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A ++ M +G PNV YT L +A +L ++ G+ PD
Sbjct: 431 CSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDT 490
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
+ Y +++ G K + +E L E +E G P+ T ++
Sbjct: 491 FCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKE 550
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ G IP + +I C GK+ +A M E G + Y L+ L
Sbjct: 551 MLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGL 605
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D FD PN TY I+ Y E+ +++ L P V TYT++++G+
Sbjct: 794 RLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGY 853
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K+GR +E+ + +E I G+ P+ I ++ +I A G
Sbjct: 854 DKMGRRSEMFSVFDEVIAAGIEPD------------------NIMYSVIINAFLKEGMTT 895
Query: 122 KALLLLFLMY 131
KAL+LL M+
Sbjct: 896 KALVLLDQMF 905
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K+ F +A +V+ M + G P+ Y L EA L+ + +G KPD
Sbjct: 465 FLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPD 524
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+TY A + G+ + G + + E +E GV PN V L N
Sbjct: 525 AFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFR 584
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G + T+ ++ L GK++ A + M G P Y TLI
Sbjct: 585 SMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLI 637
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 66/175 (37%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C +K E A+ + D M G P Y L + YE+L+ +K +
Sbjct: 358 CVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIV 417
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------- 91
YTY + G C G + ++ E G PNVV TLI
Sbjct: 418 ISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRV 477
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + + G P T +N++I L K+D+A L M E+G P Y I
Sbjct: 478 LKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFI 532
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 82/206 (39%), Gaps = 59/206 (28%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVK-------- 43
C EA +++D M +G P+V TY L EAY ML V
Sbjct: 261 CGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLN 320
Query: 44 -----------------------NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80
+ G PDV+TY +M G CK+GR + +L+E E+
Sbjct: 321 TVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEK 380
Query: 81 GVTPNVV---TLIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
G PN+V TL+H L + G + +N +I AL GK+D+A
Sbjct: 381 GCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEA 440
Query: 124 LLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ L+ M G P Y+T+I L
Sbjct: 441 MRLVQEMKSQGCKPDICTYNTIIYHL 466
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + +AR ++D M G+ N Y + EA ++ +K+ G KPD
Sbjct: 396 FCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPD 455
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------LHN 94
+ TY ++ C + +E + +E GV N + TLIH L N
Sbjct: 456 ICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLAN 515
Query: 95 VIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + P +++N +I+ALC G +D++++LL M G P+ Y+ LI +L
Sbjct: 516 EMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINEL 571
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + +++ M G PN +Y +L +A E+ + N GL PD+
Sbjct: 537 CKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDI 596
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++G CKVG ++ + LL + V P++V T+N +I
Sbjct: 597 VTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIV------------------TYNILI 638
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
C V +D A +LL G +P+ + +++ +QP
Sbjct: 639 SWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNFVRQP 680
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---------- 91
D + P +T+ C++GR+ + + LL G P+ V T+IH
Sbjct: 174 DRVPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAE 233
Query: 92 ----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L ++ +G TFN+V+ LCG+G + +A L+ M HG PS Y L++
Sbjct: 234 AATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLR 293
Query: 148 KL 149
L
Sbjct: 294 GL 295
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 13/145 (8%)
Query: 18 MFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
++ H V + EA +L + G DV T+ V+ G C +G E L++
Sbjct: 217 LYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRM 276
Query: 78 IERGVTPNVVTLIHL-----------HNVIDIGHIPR--TITFNNVIQALCGVGKIDKAL 124
+ G TP+VVT L +G +P + N VI+ GK+ +A
Sbjct: 277 MMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARAT 336
Query: 125 LLLFLMYEHGKIPSRTLYDTLIKKL 149
L +M G P Y+ L+ L
Sbjct: 337 ELYEMMGSKGCPPDVHTYNILMHGL 361
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P T TF +ALC +G+ AL LL M HG +P LY T+I L Q
Sbjct: 178 PTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQ 228
>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 825
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +F +++ M G + NV + + EA EML + G PD
Sbjct: 285 FCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPD 344
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+ TY +++ CK GR E ELL +A ERG+ PN + L+H L
Sbjct: 345 ITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLF 404
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +IG +++ I + G+ID AL++ M E G P +Y+ L+ L
Sbjct: 405 RIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGL 460
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAY----------EMLMNVKNDGLKPDV 51
CN E R++I + + P+V Y I++ Y L +K G+ P V
Sbjct: 216 CNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTV 275
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-------------- 97
TY A+++GFCK G V +LL E RG+ NV +NVID
Sbjct: 276 ETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKV---FNNVIDAEYKYGLVTEAAEM 332
Query: 98 ------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+G P T+N +I C G+I++A LL E G +P++ Y L+
Sbjct: 333 LRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLM 387
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M + G P++TTY I+ EA E+L K GL P+ ++YT +M
Sbjct: 328 EAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLM 387
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI---------------- 101
+CK G + +L E G ++V+ +H V+ G I
Sbjct: 388 HAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVF 447
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +N ++ LC G+I LLL M + P ++ TLI
Sbjct: 448 PDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLI 492
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 72/190 (37%), Gaps = 42/190 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
Y ++D A K+ M + + PNV TYT ++ A ++ +K+ L P+
Sbjct: 565 YVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPN 624
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
V TYT ++ GF K G+ + + G PN T +L N
Sbjct: 625 VVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTNTATSPVLIEEKD 684
Query: 95 --------VIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
++D G +N+VI LC G +D A LLL M G +
Sbjct: 685 SKENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGTVDTAQLLLTKMLTKGFLIDS 744
Query: 140 TLYDTLIKKL 149
+ L+ L
Sbjct: 745 VCFTALLHGL 754
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKND-GLKPDVYTYTAVMD 59
A V + M + G P+ Y IL A ++L++ D ++PDVY + ++D
Sbjct: 434 ALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLID 493
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GF + G +E +++ I +GV P +V +N +I+ C GK
Sbjct: 494 GFIRNGELDEAIKIFKVIIRKGVDPGIV------------------GYNAMIKGFCKFGK 535
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ AL L M P Y T+I
Sbjct: 536 MTDALSCLNEMNSVHHAPDEYTYSTVI 562
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----ILEAYEM---LM---NVKNDGLKPD 50
YC K D+ +A ++ + + G ++ +Y ++ A E+ LM + G+ PD
Sbjct: 390 YCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPD 449
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y +M G CK GR + LL+E ++R V P+V F +
Sbjct: 450 AQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYV------------------FATL 491
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I G++D+A+ + ++ G P Y+ +IK
Sbjct: 492 IDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIK 528
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+ + G P + Y + +A L + + PD YTY+ V+
Sbjct: 503 EAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVI 562
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHI 101
DG+ K + +++ + ++ PNV+T L N + +
Sbjct: 563 DGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLV 622
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+ ++ GK ++A + LM +G +P+ + LI L
Sbjct: 623 PNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGL 670
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + D A+ V + + G P+V ++ L E + + + G++PD
Sbjct: 146 FCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 205
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
VYTY+ +++G CK + ++ L +E +++G+ PN VT L
Sbjct: 206 VYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYK 265
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 318
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 28/165 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 251 HCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
TYT ++DG CK G E I+ + + V LI L
Sbjct: 311 KITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLR 370
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
++ +G P T T+ +I C G + LL M G +PS
Sbjct: 371 EMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 415
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A ++L + + GLKPD TYT +++ FCK G +LL E
Sbjct: 347 VAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G P+VV+
Sbjct: 407 MQRDGHVPSVVS 418
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE +++ G +Y + +M FCK G
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILDC---GYPASLYFFNILMHRFCKEGDI 152
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI----------------PRTITFNNV 110
+ N + G+ P+VV+ L N I +G + P T++ +
Sbjct: 153 RVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVL 212
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M + G +P+ + TLI
Sbjct: 213 INGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLI 248
>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
Length = 461
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 31/146 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDG 60
V+ M + G P+V +Y IL EA E+L + +DG PDV +Y+ ++DG
Sbjct: 156 VLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDG 215
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
K G S++ +E +ERG+ P+VV T+N ++ ALC +
Sbjct: 216 LFKEGDSDKAYSTYHEMLERGILPDVV------------------TYNTIVAALCKAQAM 257
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
DKA+ +L M ++G +P Y++++
Sbjct: 258 DKAMDVLNRMVKNGVMPDCITYNSIV 283
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V++ M NG P+ TY + EA +L + +DG++PD
Sbjct: 252 CKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDA 311
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH 91
TYT++MD CK GR E ++L+ I+RG+ PNV+ TL+H
Sbjct: 312 VTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLH 354
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 29/140 (20%)
Query: 18 MFDNGYHPNVTTYTIL-------EAYEMLMNVKN----DGLKPDVYTYTAVMDGFCKVGR 66
M + G P+V TY + +A + M+V N +G+ PD TY +++ G+C G+
Sbjct: 232 MLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQ 291
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
S E + +L + GV P+ V T+ +++ LC G+ +A +
Sbjct: 292 SKEAIGILEKMCSDGVEPDAV------------------TYTSLMDYLCKNGRCIEARKI 333
Query: 127 LFLMYEHGKIPSRTLYDTLI 146
L M + G P+ Y TL+
Sbjct: 334 LDSMIKRGLKPNVITYSTLL 353
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA +++ M +G P+ TYT L EA ++L ++ GLKP+
Sbjct: 286 YCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPN 345
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLN 75
V TY+ ++ G+ G E+ +LL+
Sbjct: 346 VITYSTLLHGYATKGALVEMRDLLD 370
Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 40 MNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-------VTPNVVTL-- 89
M +DG + P ++TY ++ C+ GR + L I++G TP + +L
Sbjct: 86 MARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCA 145
Query: 90 ---------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK--IPS 138
I L + ++G P ++N +++ LC + +AL LL +M + G P
Sbjct: 146 EKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPD 205
Query: 139 RTLYDTLIKKL 149
Y T+I L
Sbjct: 206 VVSYSTIIDGL 216
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG---- 46
+C D A ++ M ++G P TTY ++ A+ + +K G
Sbjct: 214 WCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDE 273
Query: 47 -LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHL---------- 92
KPDV +YT ++ G G+ ++ +L +E + G P + T LI +
Sbjct: 274 NCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDA 333
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++I +IP +T+ +I+ LC VGKID+A+ L+ M G P Y+ LI+
Sbjct: 334 VTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIR 392
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNV 95
PDV TY + DG+C+V ++ ++LL + E G+ P T L H N
Sbjct: 202 PDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNF 261
Query: 96 I---------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
D P +++ +I L G++DKA L M + G P+ Y+ LI
Sbjct: 262 FLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALI 321
Query: 147 K 147
+
Sbjct: 322 Q 322
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 31/161 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A V D M Y PNV TYT+L A +++ +KN+G +P V
Sbjct: 325 CKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVV 384
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ + G ++ + L E + +G +P T+N VI
Sbjct: 385 QTYNVLIRYSFEEGEMDKALHLF-ERMSKGEEC----------------LPNQDTYNIVI 427
Query: 112 QALCGVGKIDK---ALLLLFLMYEHGKIPSRTLYDTLIKKL 149
A+ + + A ++ M E G +P R + + ++ L
Sbjct: 428 SAMFVRKRAEDMAIAARMVMEMVERGYLPRRFMLNRVLNGL 468
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPN------------VTTYTI---------LEAYEMLMN 41
C + EA ++D M + G+ PN ++T + + A +
Sbjct: 21 CREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCKDGNHINAQNLFTE 80
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------- 94
+ G+ P+V TY ++D FC GR ++ +LL IE+ + P++VT L N
Sbjct: 81 MHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERK 140
Query: 95 ----------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
++ P TIT+N++I C ++D A +L M G P + T
Sbjct: 141 VSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFST 200
Query: 145 LI 146
LI
Sbjct: 201 LI 202
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + +A +++ +M + +P++ T++ L EA E+ + + P
Sbjct: 100 FCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPT 159
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-- 98
TY +++DGFCK R ++ +L+ +G +P+VVT L N ++I
Sbjct: 160 TITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFC 219
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + T+T+ +I C VG +D A LL M G P + ++ L
Sbjct: 220 EMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGL 275
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 28/146 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ M P TY + +A ML ++ + G PDV T++ ++
Sbjct: 143 EAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLI 202
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHI 101
+G+CK R + ME+ E RG+ N V TLIH L+ +I G
Sbjct: 203 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVA 262
Query: 102 PRTITFNNVIQALCGVGKIDKALLLL 127
P ITF+ ++ LC ++ KA +L
Sbjct: 263 PDYITFHCMLAGLCSKKELRKAFAIL 288
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G +P+V T+ +M+ C+ GR E + L++ +E G PN + H+ + I
Sbjct: 5 GCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVIS------ 58
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC G A L M+E G P+ Y+ +I
Sbjct: 59 --TAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMI 97
>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hederifolia]
Length = 431
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V +Y L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH---- 100
VYTY+ +++G CK + ++ EL +E + +G+ PN VT L + +D+
Sbjct: 212 VYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYK 271
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P IT+N +I L G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLI 324
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A++++ + GLKPD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPD 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+TY ++DG CK G + E I+ + + V LI L
Sbjct: 317 KFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ +G P T+ +I C G + K LL M G +PS Y+ L+
Sbjct: 377 EMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++++ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 159 RVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A L M G IP+ + TLI
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 254
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 35/151 (23%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M NGY +V TYT L A +L + + G P+V TYTA++DG CK R
Sbjct: 1 MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
++ ++ + + G P++V T+N++I LC ++D A L+
Sbjct: 61 PHDAIQTVKRMLRSGCEPDLV------------------TYNSLIHGLCMANRMDDAGLV 102
Query: 127 LFLMYEHGKIPSRTLYDTLI------KKLDQ 151
L + +G P+ Y TL+ ++LDQ
Sbjct: 103 LQELVRNGFAPNHITYSTLVIWNCRRRRLDQ 133
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
D M ++G P+V TY + EML + G+ PDV T+ +++ G CK
Sbjct: 176 DEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKA 235
Query: 65 GRSNEVMELLNEAIERGVTPNVVTL-IHLHNV------------------IDIGHIPRTI 105
R ++ ++ +ERG P+ +T I L N+ + G +
Sbjct: 236 NRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVY 295
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T N I ALC GK A +L M E G +P+ Y+ +I L
Sbjct: 296 THNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGL 339
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G PDV TY + G CK G+ ++ +E+L E G+ P+VVT
Sbjct: 182 GRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVT----------------- 224
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
F ++I LC +ID A + M E G +P Y ++ L +
Sbjct: 225 -FCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSR 269
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M +G P++ TY L +A +L + +G P+
Sbjct: 56 CKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNH 115
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------- 92
TY+ ++ C+ R ++ L+ E I RG N+V I
Sbjct: 116 ITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDG 175
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G IP +T+N I LC GK+DK L +L M G P + ++I L
Sbjct: 176 DEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGL 232
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A+ ++ M D G PNV TYT L +A + + + G +PD+
Sbjct: 21 CKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDL 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY +++ G C R ++ +L E + G PN +T
Sbjct: 81 VTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHIT 117
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPD 50
C F A+ ++ M ++G PN+ +Y + +A+++ + + G KPD
Sbjct: 305 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPD 364
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V + ++ GFCK GR ++ +LL E + + +P +T+N +
Sbjct: 365 VIFFNTLISGFCKAGRLSQAHQLLIEMKAKNIC-----------------VPDVVTYNTL 407
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G + +A LLL M G P+ Y LI
Sbjct: 408 IDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALI 443
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 34/161 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEA-------------YEMLMNVKNDGL 47
Y + EA + D M G P++ TY T+L A Y+ L N K
Sbjct: 446 YAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKN-KTSYC 504
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
PD TY ++DG+C+ + + + LL E RG + + + T+
Sbjct: 505 SPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCD------------------SYTY 546
Query: 108 NNVIQALCGVGKI-DKALLLLFLMYEHGKIPSRTLYDTLIK 147
N +I L ++ KAL + M + +PS +++++L++
Sbjct: 547 NVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVR 587
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 30/157 (19%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V TY L +A +L ++ G KP+V TY A+++G+ K G E L
Sbjct: 399 PDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESL 458
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHI-------------------PRTITFNNVIQAL 114
+E +G P+++T + + + P IT+ +I
Sbjct: 459 FDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGY 518
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C ++ L LL M G Y+ LI KL +
Sbjct: 519 CRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAE 555
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E +++ M +NG P+ + I+ EA + +K GL PD
Sbjct: 353 YATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPD 412
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V + A++D CK+GR ++ + N+ + GV PN+ L
Sbjct: 413 VVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYF 472
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P + FN ++ LC G++ KA L+ LM G P Y TLI
Sbjct: 473 EMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLI 525
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A+++ID M G P+V +YT L EA + L + + GLKPD
Sbjct: 494 CTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDE 553
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+TY ++ G+C+ GR ++ + E + G+TP VVT
Sbjct: 554 WTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT 590
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 63/210 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A V M D G P+ TY L E ML + GLKPD
Sbjct: 249 CKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDC 308
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------LHNVIDI 98
YTY ++++ C GR E + I +G+ PNV LIH +H+++++
Sbjct: 309 YTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNL 368
Query: 99 ---------------------------------------GHIPRTITFNNVIQALCGVGK 119
G P + F +I ALC +G+
Sbjct: 369 MVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGR 428
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D A+L M G P+ ++++L+ L
Sbjct: 429 VDDAVLKFNQMMNEGVAPNIFVFNSLVYGL 458
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 31/176 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYH---PNVTTYTIL-----------EAYEMLMNVKNDGL 47
+CN+ EA +++ M D+ PNV +Y + +AY + + + + G+
Sbjct: 175 FCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGI 234
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH------------- 91
+P+V TYT V+DG CK + + + I++GV P+ T LIH
Sbjct: 235 QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVR 294
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + G P T+ +++ LC G+ +A M G P+ +Y LI
Sbjct: 295 MLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILI 350
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNV-----------TTYTILEAYEMLMNVKNDGLKPDV 51
C + + +A++ M + G P+V T +++A ++ ++ G +PDV
Sbjct: 459 CTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDV 518
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YT ++ G C VGR +E + L+ + G+ P+ T+N ++
Sbjct: 519 ISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPD------------------EWTYNTLL 560
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G+ID A + M +G P Y T++ L
Sbjct: 561 HGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGL 598
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLN---EAIERGVTPNVVTLIHLHN-------- 94
G PDV +Y ++ GFC R+ E +ELL+ ++ R PNVV+ + N
Sbjct: 160 GCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQV 219
Query: 95 ---------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++D G P +T+ VI LC +D+A + M + G P Y+ L
Sbjct: 220 DKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279
Query: 146 I 146
I
Sbjct: 280 I 280
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 36/160 (22%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K +D M G P+ TY L +AY + + +G+ P V TY+ ++
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP---------------- 102
G R +E EL I G N I ++N+I G
Sbjct: 596 HGLFTTRRFSEAKELYLNMITSGKQWN----IWIYNIILNGLSKNNCVDEAFKLFQSLCS 651
Query: 103 -----RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
TFN +I AL G+ + A+ L + +G +P
Sbjct: 652 KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP 691
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 67/154 (43%), Gaps = 31/154 (20%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EA+++ M +G N+ Y I+ EA+++ ++ + + ++ T+
Sbjct: 604 FSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNI 663
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRTITFNNVIQALC 115
++ K GR+ + M L G+ P+V T + N+I+ G++ F+++ A
Sbjct: 664 MIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEE---FDDLFSA-- 718
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
M + G P+ + + L+++L
Sbjct: 719 --------------MEKSGTTPNSRMLNALVRRL 738
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+ + + +TT+ I+ +A + + + GL PDV+TY +
Sbjct: 641 EAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIA 700
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT 104
+ + G E +L + + G TPN L L ++ G I R
Sbjct: 701 ENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRA 747
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKPD 50
+C K EAR ++ M G P TY T++ AY L +K G +PD
Sbjct: 254 HCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPD 313
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVT-----------------LIHL 92
++TY + G C+ G+ +E +L +E + G V+P+VVT L L
Sbjct: 314 LWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLL 373
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G +T N +++ LC G++++AL L +M E G P Y+TLI
Sbjct: 374 EEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLI 427
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ M + G P+V TY L +A+ ++ + GLK D
Sbjct: 396 CREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDT 455
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+T ++ CK R E ELL +RG P+ V+ L
Sbjct: 456 FTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDE 515
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I P T+N +I+ L +GK+ +A+ L + E G +P T Y+ +I
Sbjct: 516 MIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIII 567
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 28/164 (17%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
D M P+++TY L EA + L + GL PD TY ++ +CK
Sbjct: 514 DEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKE 573
Query: 65 GRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITF 107
G + + N+ +E P+VVT L N ++ G IT+
Sbjct: 574 GDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITY 633
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
N +IQALC +D AL M G P Y+ L+ L +
Sbjct: 634 NTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSE 677
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 32/160 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C EA K+ D M G P+V TY L +A +L ++ G+K
Sbjct: 325 CQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSS 384
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ T+ ++ G C+ G+ E + L E G+TP+V IT+N +
Sbjct: 385 LVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDV------------------ITYNTL 426
Query: 111 IQALCGVGKIDKALLLLFLMYEHG-KIPSRTLYDTLIKKL 149
I A C G + KA +L+ M G K+ + TL +TL+ L
Sbjct: 427 IDASCKAGNVAKAFVLMDEMVRSGLKMDTFTL-NTLLYNL 465
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H + + T+ +A L ++ GL PD TY +++ C+ G E LL
Sbjct: 210 YTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLAR 269
Query: 77 AIERGVTPNVVT----------LIHLHNVIDI-------GHIPRTITFNNVIQALCGVGK 119
+ G+ P T L + D+ G P T+N + LC GK
Sbjct: 270 MKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGK 329
Query: 120 IDKALLLLFLMYEHGKI-PSRTLYDTLI 146
+D+A L M + G + P Y+TL+
Sbjct: 330 VDEAFKLKDEMEQLGIVSPDVVTYNTLV 357
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++ M + G ++ T+ I+ EA L + +GL PDV TY ++
Sbjct: 368 DALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLI 427
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVI----------------DIGHI 101
D CK G + L++E + G+ + TL L+N+ G +
Sbjct: 428 DASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFV 487
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +++ V+ A K + AL L M + PS + Y+TLIK L
Sbjct: 488 PDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGL 535
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 45/177 (25%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A K+ + + G +V TY L A +++ GL+PDV+TY ++
Sbjct: 613 KAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLL 672
Query: 59 DGFCKVGRSNEVMELLN---------------------EAIERGVTPNVVTLIHLHNVID 97
+ GRS E ++L+ EA+E G P V + D
Sbjct: 673 SALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKS--------D 724
Query: 98 IGHIPRTI-----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I + T ++N I+ LC G++ +A +L M + G + Y TL++ L
Sbjct: 725 IESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGL 781
>gi|356519094|ref|XP_003528209.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 345
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 21/144 (14%)
Query: 24 HPNVTTYTILEAYE---MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80
PN+ TY EA E M+ ++ +GLK DV T++ GFC +G S+E +E L E + R
Sbjct: 148 EPNMVTYNTGEADEARKMMSRMRLNGLKEDVANNTSLSKGFCIMGNSDETVEHLREMVSR 207
Query: 81 GVTPNVV------------------TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
G+ P+V ++ L ++ G P +FN V + L GK+DK
Sbjct: 208 GMRPDVKAYRVVVVNEYCKIRKPSEAVLLLREMVVRGFKPSMSSFNAVFRVLVDEGKLDK 267
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLI 146
+LLL M + G P+ Y T+I
Sbjct: 268 RVLLLKQMPKMGCSPNFLFYCTVI 291
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 42/145 (28%)
Query: 47 LKPDVYTYTAVMDGFCKV------------------------GRSNEVMELLNEAIERGV 82
LKPDVYTYT ++ G CKV G ++E ++++ G+
Sbjct: 115 LKPDVYTYTTMICGLCKVGMVESACKVFEEIPCEPNMVTYNTGEADEARKMMSRMRLNGL 174
Query: 83 TPNVV-----------------TLIHLHNVIDIGHIPRTITFN-NVIQALCGVGKIDKAL 124
+V T+ HL ++ G P + V+ C + K +A+
Sbjct: 175 KEDVANNTSLSKGFCIMGNSDETVEHLREMVSRGMRPDVKAYRVVVVNEYCKIRKPSEAV 234
Query: 125 LLLFLMYEHGKIPSRTLYDTLIKKL 149
LLL M G PS + ++ + + L
Sbjct: 235 LLLREMVVRGFKPSMSSFNAVFRVL 259
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYE----------MLMNVKNDGLKPDV 51
CN +A+ ++D M G PNV YT I+ Y +L + + + P+
Sbjct: 687 CNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNK 746
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT ++DGFCK+G++ E +LLNE E+G+ P+ V T+N
Sbjct: 747 FTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAV------------------TYNAFT 788
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
LC GK+++A + M Y TLI Q
Sbjct: 789 NGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDGCHQ 828
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 28/167 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F A V + G P++ T T L ++YE+ + G+ PDV+ ++
Sbjct: 202 FGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFST 261
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHI-------------- 101
+++ FCK R ++ + L ++ + GV PNVVT + +H + G +
Sbjct: 262 MINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK 321
Query: 102 --PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P IT++ I L + KID+A +L M E G +P+ +Y+TLI
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLI 368
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K F A I M PN T L EA E+ + G P++
Sbjct: 442 CLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNI 501
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
T A++ G CK G E ++LL + +ERG+ + +T L
Sbjct: 502 VTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEE 561
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P TFN ++ LC KID+A L ++G +P+ Y +I
Sbjct: 562 MVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMI 613
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA K+ D M G PN T L +A +L + GL +
Sbjct: 371 YCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPIN 430
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LH 93
+++ V++ C R + + E + R + PN + TL+
Sbjct: 431 QGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWC 490
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G +P +T N +I LC G + + L LL M E G + R Y+TLI
Sbjct: 491 RLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLI 543
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 32/181 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC N E +++ + N Y L A+ + ++K+ G+
Sbjct: 616 YCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLS 675
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNVIDIGHI------ 101
TY+++M G C +G ++ LL+E + G+ PNVV T+I ++ +G +
Sbjct: 676 CATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYS--KLGQMNKVNIV 733
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P T+ +I C +GK +A LL M E G +P Y+ L +
Sbjct: 734 LQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCK 793
Query: 152 Q 152
+
Sbjct: 794 E 794
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 29/132 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + M P++ TY++ EA +L + G P+
Sbjct: 302 CKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNE 361
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++DG+CK+G +E +++ ++ + +G++PN VTL N++I
Sbjct: 362 VVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTL------------------NSLI 403
Query: 112 QALCGVGKIDKA 123
Q C +I +A
Sbjct: 404 QGFCKSDQIGQA 415
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E K++ M + G + TY L E +E+ + G++PD+
Sbjct: 512 CKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDI 571
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
YT+ ++ G C + +E L +E + G PNV T +I L+
Sbjct: 572 YTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNE 631
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ +N++I+A C G ++ A L M G + S Y +L+ L
Sbjct: 632 LVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGL 686
>gi|302765375|ref|XP_002966108.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
gi|300165528|gb|EFJ32135.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
Length = 382
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 29/168 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K + A ++++ M G P+V T TIL A+E+L + + G P+
Sbjct: 129 WTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKESKVAAAWEVLCEMLDAGCVPN 188
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
+ T +++ G C+ R ++ + L+ + RG TPNVVT L + V D G++
Sbjct: 189 LVTSKSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYE 248
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
+T++ +I LC G++D+A LLL M G PS TL
Sbjct: 249 VMTGDGCDADVVTYSTLIDGLCKGGRVDEAHLLLARMVRMG-TPSSTL 295
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE------------AYEMLMNVKNDGLKPD 50
C N+ A+++ ++M P VT T+L+ A E+L ++K G PD
Sbjct: 94 CKNNEPDRAQELFEHMKSVECSPLVTYNTLLDGLFWTGKLESAMAVELLESMKARGCSPD 153
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V T T ++DG CK + E+L E ++ G PN+VT L+H +
Sbjct: 154 VITSTILVDGLCKESKVAAAWEVLCEMLDAGCVPNLVTSKSLLHGLCRARRVSDALALMR 213
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +T+ +I LC VG++ A L +M G Y TLI L
Sbjct: 214 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDGCDADVVTYSTLIDGL 269
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 31/170 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A ++ M D+G PNV TY L A E+ ++K+ P + TY ++
Sbjct: 66 QALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSP-LVTYNTLL 124
Query: 59 DGFCKVGRSNEVM--ELLNEAIERGVTPNVVT---LIH--------------LHNVIDIG 99
DG G+ M ELL RG +P+V+T L+ L ++D G
Sbjct: 125 DGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKESKVAAAWEVLCEMLDAG 184
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P +T +++ LC ++ AL L+ M G P+ Y TLI L
Sbjct: 185 CVPNLVTSKSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 234
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPDV 51
C +A ++ M G PNV TY T+++ + VK+ DG DV
Sbjct: 200 CRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDGCDADV 259
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY+ ++DG CK GR +E LL + G + +T
Sbjct: 260 VTYSTLIDGLCKGGRVDEAHLLLARMVRMGTPSSTLT 296
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
++++ + P+++ + ++DG CK RS +V+ G+ +
Sbjct: 3 EMRSNNMVPNMFLCSILIDGLCKAKRSIDVLRCFRTMQGAGIVAD--------------- 47
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ + ++ L ++D+AL +L M +HG P+ Y++LI L
Sbjct: 48 ---TVIYTVLLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 93
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 33/166 (19%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
D M N PN+ +IL + ++ G+ D YT ++ G K
Sbjct: 2 DEMRSNNMVPNMFLCSILIDGLCKAKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLWKE 61
Query: 65 GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT----------------ITFN 108
R ++ + +L+E + G PNVVT L + + + P +T+N
Sbjct: 62 KRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPLVTYN 121
Query: 109 NVIQALCGVGKIDKALL--LLFLMYEHGKIP----SRTLYDTLIKK 148
++ L GK++ A+ LL M G P S L D L K+
Sbjct: 122 TLLDGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKE 167
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 3 CNKNDFFEARKVIDYMF-DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + E R ++ M ++G P+ TY L EA L + + G + D
Sbjct: 358 CKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRID 417
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+A++ CK GR +E +L+NE + +G P P +T+ V
Sbjct: 418 KLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCP-----------------PDVVTYTAV 460
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C +G++DKA LL +M+ HG P+ Y L+ +
Sbjct: 461 VNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGM 499
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGY-HPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + EA+ +I+ M G+ P+V TYT + +A ++L + G KP+
Sbjct: 429 CKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPN 488
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-- 98
+YTA+++G C+ G+S E E++N + E +PN +T ++H L D+
Sbjct: 489 TVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVR 548
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKA 123
G P + N ++Q+LC G+ +A
Sbjct: 549 EMVLKGFFPGPVEINLLLQSLCRDGRTHEA 578
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
+C + +A+K++ M +G+ PN +YT LEA EM+ + P+
Sbjct: 464 FCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPN 523
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IH-----LH 93
TY+ +M G + G+ +E +++ E + +G P V + H +
Sbjct: 524 SITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFME 583
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL---FLMYEHGKIPS-RTLYDTLIKK 148
++ G + F VI C ++D AL +L +L+ +H + + TL DTL KK
Sbjct: 584 ECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKK 642
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKPDV 51
C EARK ++ + G NV +T + + + ++V +D DV
Sbjct: 570 CRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADV 629
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT ++D K GR E EL+ + + +G+ P +T+ VI
Sbjct: 630 FTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPT------------------PVTYRTVI 671
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C +GK+D + +L M K RT+Y+ +I+KL
Sbjct: 672 HRYCQMGKVDDLVAILEKMISRQK--CRTIYNQVIEKL 707
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 30/163 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNV----TTYTIL-------EAYEMLMNVKNDGLKPD 50
Y +A KV+ M G PN+ TT + +A L ++ G+ P+
Sbjct: 252 YSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPN 311
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++ G+C + R E +ELL + +G P+ +++ +
Sbjct: 312 VVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPD------------------KVSYYTI 353
Query: 111 IQALCGVGKIDKALLLLFLMY-EHGKIPSRTLYDTLIKKLDQQ 152
+ LC +I + L+ M EHG +P + Y+TLI L +
Sbjct: 354 MGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKH 396
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ M G PN+ TY+ L +A + +VK GL+PD
Sbjct: 376 YGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPD 435
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V Y+ ++DG CK G +E + LL E + G+ PNV+T
Sbjct: 436 VVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVIT 473
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
EA+ + ++ G D+ TY A++D + K G+ E M LL E +RG +PN++T L
Sbjct: 349 EAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALI 408
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+V G P + ++ ++ C G D+AL LL M ++G
Sbjct: 409 DAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIR 468
Query: 137 PSRTLYDTLIKKLDQQ 152
P+ Y++L+ +Q
Sbjct: 469 PNVITYNSLLDAYGRQ 484
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TL 89
L A M K+ G++P V TY+ ++DG+ K+G ++E + L E + V P+ + T+
Sbjct: 278 LGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTM 337
Query: 90 IHLHNVI--------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ +H + + G +T+N ++ + GK +A+ LL M + G
Sbjct: 338 VDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGA 397
Query: 136 IPSRTLYDTLI 146
P+ Y LI
Sbjct: 398 SPNILTYSALI 408
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY--EMLMNVKNDG------------- 46
C EA +++ M DNG PNV TY ++L+AY + LM KN
Sbjct: 447 CKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTML 506
Query: 47 LKPDV-YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
LKP V Y +++D K + E + GV PNVVT + N
Sbjct: 507 LKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILN 555
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------- 96
KP++ Y AV+D K G + + E +E+G++P+ +T L +
Sbjct: 187 KPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDR 246
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
+ G +T+N +I C G++ L+ M + I PS Y T+I
Sbjct: 247 IFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMI 303
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ M G PN+ TY+ L +A + +VK GL+PD
Sbjct: 375 YGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPD 434
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V Y+ ++DG CK G +E + LL E + G+ PNV+T
Sbjct: 435 VVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVIT 472
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
EA+ + ++ G D+ TY A++D + K G+ E M LL E +RG +PN++T L
Sbjct: 348 EAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALI 407
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+V G P + ++ ++ C G D+AL LL M ++G
Sbjct: 408 DAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIR 467
Query: 137 PSRTLYDTLIKKLDQQ 152
P+ Y++L+ +Q
Sbjct: 468 PNVITYNSLLDAYGRQ 483
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TL 89
L A M K+ G++P V TY+ ++DG+ K+G ++E + L E + V P+ + T+
Sbjct: 277 LGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTM 336
Query: 90 IHLHNVI--------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ +H + + G +T+N ++ + GK +A+ LL M + G
Sbjct: 337 VDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGA 396
Query: 136 IPSRTLYDTLI 146
P+ Y LI
Sbjct: 397 SPNILTYSALI 407
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----------- 96
KP++ Y AV+D K G + + E +E+G++P+ +T L +
Sbjct: 186 KPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDR 245
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
+ G +T+N +I C G++ L+ M + I PS Y T+I
Sbjct: 246 IFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMI 302
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 63/209 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC EA K+ M G+ PNV TYT L +AY +L +K +G+
Sbjct: 430 CYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSC 489
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELL----------------------------------- 74
+ YTY +++G C VGR EV E+L
Sbjct: 490 NDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVY 549
Query: 75 NEAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ +G+ PN+VT L L++V G P +N++I C
Sbjct: 550 QQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQE 609
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + AL +L LM + G +P+ ++Y++ I
Sbjct: 610 GNMSHALQVLVLMLKDGLLPNISVYNSFI 638
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + A +V+ M +G PN++ Y EA + + +G+ D
Sbjct: 606 FCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLD 665
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-------- 101
TYT ++DGF K G ++L +E + +G P+ +T L H + G I
Sbjct: 666 TATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLD 725
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + +N +I GK+ +A L M E +P T YD L+
Sbjct: 726 EMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 37/175 (21%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N + +A + M D+G P+ TY IL EA + + G+KP +
Sbjct: 364 NDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIV 422
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI------- 105
TY +++ +C G +E ++L E +G TPNVVT L GHI +
Sbjct: 423 TYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMK----GHINKAAFDKAYAL 478
Query: 106 --------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N +I LC VG++ + +L G +P+ Y+++I
Sbjct: 479 LAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSII 533
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
A +L +++ G P +T+ +V+D K GR E + + +E + G +VV TL+
Sbjct: 230 RALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLM 289
Query: 91 H-------LHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
H + +DI G +P +T+ +I+ G +KA L M +HG +
Sbjct: 290 HGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLL 349
Query: 137 PSRTLYDTLIKKL 149
PS ++ +IK L
Sbjct: 350 PSTNEFNMVIKGL 362
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + +A + + +G P TYT+L +AYE+ +++ GL P
Sbjct: 292 YCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPS 351
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHL--------------H 93
+ V+ G + + L E + G+ P+ T LIH
Sbjct: 352 TNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWE 410
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ + G P +T+++++ C G +D+A+ L M G P+ Y TL+K
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMK 464
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------------- 87
++ G D + + VM K G ++ + L +E + P+
Sbjct: 168 MRGKGRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRD 227
Query: 88 ---TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
L+ L + D G +P TFN+V+ L G++++AL + + GK S L T
Sbjct: 228 ANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATT 287
Query: 145 LI 146
L+
Sbjct: 288 LM 289
>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 456
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+ ++ M G +V TYT L +A + M +K G++P+
Sbjct: 273 CKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNK 332
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTYTA++DG CK GR + +L + + +G +V T+N +I
Sbjct: 333 YTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVC------------------TYNVMI 374
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G +D+AL + M ++G IP+ ++ +I+ L
Sbjct: 375 GGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSL 412
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EAY+ + G+ P+V TYT ++ GFC G+ LLNE I + + PNV T L
Sbjct: 210 EAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILI 269
Query: 94 NVIDI-----------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + G +T+ +++ C +DKA L M E G
Sbjct: 270 DALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQ 329
Query: 137 PSRTLYDTLIKKL 149
P++ Y LI L
Sbjct: 330 PNKYTYTALIDGL 342
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C K + ++ D + G+ N +Y L A + L +++ +V
Sbjct: 133 CLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNV 192
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
Y ++DG CK NE + +E RG+ PNV+T L N
Sbjct: 193 VMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNE 252
Query: 96 IDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + +I P T+ +I ALC GK+ +A LL M+ G+ Y +L+
Sbjct: 253 MILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLL 304
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 22 GYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
GY + Y+ + M VK G++P++ T +++ FC +G+ + +L + ++ G
Sbjct: 60 GYLAKMKHYSTAISLSKQMEVK--GIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLG 117
Query: 82 VTPNVVTL----------------IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
PN +TL +H H+ V+ G +++ ++ LC +G+ A+
Sbjct: 118 YQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAI 177
Query: 125 LLLFLMYEHGKIPSRTLYDTLIKKL 149
L ++ + + +Y+T+I L
Sbjct: 178 KFLRMIEDSSTGLNVVMYNTIIDGL 202
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++D MF GY PN T+ L EA ++ + G +PD
Sbjct: 161 YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD 220
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY V++G CK G ++ LLN+ + + P V+ T+I H+ + +++
Sbjct: 221 LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 280
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T++++I LC G+ A LL M E P + LI
Sbjct: 281 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 333
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G PNV TY+ L +A +L ++ + PDV
Sbjct: 267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH----- 100
+T++A++D F K G+ E +L +E ++R + P++VT L H+ +D
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N +I+ C ++++ + + M + G + + Y+ LI+ L Q
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA +M + + PD
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++ GFCK R E ME+ E +RG+ N T+T+N +
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN------------------TVTYNIL 437
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IQ L G D A + M G P+ Y+TL+ L
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTY 54
N EA +ID M G P++ TY ++ A+ +L ++ L+P V Y
Sbjct: 200 NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
++DG CK ++ + L E +G+ PNVVT LI L ++I+
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TF+ +I A GK+ +A L M + PS Y +LI
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C E +V M G N TY IL A E+ + +DG+ P+
Sbjct: 406 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
+ TY ++DG CK G+ + M + + P + T I + + G +
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 525
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P + +N +I C G ++A L M E G +P+ Y+TLI+
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 579
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A V+ M GY PN+ T + L EA ++ + G +P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
+ T+ ++ G +++E M L++ + +G P++VT +L
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 244
Query: 94 NVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ G + P + +N +I LC +D AL L M G P+ Y +LI L
Sbjct: 245 NKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------ 94
++N G+ + YTY+ +++ FC+ + + +L + ++ G PN+VTL L N
Sbjct: 106 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 95 -------VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
++D G+ P T+TFN +I L K +A+ L+ M G P Y
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 144 TLIKKL 149
++ L
Sbjct: 226 VVVNGL 231
>gi|242036455|ref|XP_002465622.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
gi|241919476|gb|EER92620.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
Length = 817
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + +D M G+ P++ TY+ A + ++ + PDV
Sbjct: 553 CFSGRITEALQFLDEMLKLGFLPDIVTYSAAMNGMCKIGETENALGLFRDISSKCYLPDV 612
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
+ +++GF K G+ +E E++ E + +G+ P+VVT + ++
Sbjct: 613 VAHNILINGFRKAGKFDEAQEIMEEMLSKGLFPSVVTYNLMIDIWCKSGKIDKAISCVYK 672
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ID P +T+ +++ LC G+ D+A++L M E G P+ Y I L
Sbjct: 673 MIDEEKPPTVVTYTSLLDGLCNAGRPDEAIILWCKMSEKGCSPNEIAYTAFINGL 727
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A ++ M + + P + T I EA + L + G PD+
Sbjct: 518 CRRKDTSAAADLLREMRTSSHKPWIKNCTEMVQQLCFSGRITEALQFLDEMLKLGFLPDI 577
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TY+A M+G CK+G + + L + + P+VV LI+ +
Sbjct: 578 VTYSAAMNGMCKIGETENALGLFRDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEE 637
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +T+N +I C GKIDKA+ ++ M + K P+ Y +L+ L
Sbjct: 638 MLSKGLFPSVVTYNLMIDIWCKSGKIDKAISCVYKMIDEEKPPTVVTYTSLLDGL 692
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP---NVVTLI 90
EAYE+ +K+ LKP +TY ++ G C+ ++ +LL E P N ++
Sbjct: 490 EAYEIFNQMKDLDLKPSEFTYNSLFYGICRRKDTSAAADLLREMRTSSHKPWIKNCTEMV 549
Query: 91 H--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L ++ +G +P +T++ + +C +G+ + AL L + +
Sbjct: 550 QQLCFSGRITEALQFLDEMLKLGFLPDIVTYSAAMNGMCKIGETENALGLFRDISSKCYL 609
Query: 137 PSRTLYDTLI 146
P ++ LI
Sbjct: 610 PDVVAHNILI 619
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A + M D P V TYT L EA + + G P+
Sbjct: 657 WCKSGKIDKAISCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDEAIILWCKMSEKGCSPN 716
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
YTA ++G CK GR+ + E + ++ +L++L N
Sbjct: 717 EIAYTAFINGLCKCGRTETAVNYYEEMKTKCFDLDIFSLLNLTN 760
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
YC + +A M + G PN+ TY + E E+ +K +GL PD
Sbjct: 737 YCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPD 796
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ G+ K+G E + L E + +G +P+T T+N +
Sbjct: 797 ASTYDTLISGYGKIGNKKESIRLYCEMVAQGF------------------VPKTSTYNVL 838
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I VGK+D+A LL M G PS + YD LI
Sbjct: 839 ISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILI 874
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA E+L +V + GL D YT++MDGF K G+ + + ++ E E+ + +VVT L
Sbjct: 501 EAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLI 560
Query: 94 N----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
N +I++G P T+N +I+A C G++D AL L M H +P
Sbjct: 561 NGLLEHGKYEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMP 620
Query: 138 SRTLYDTLIKKLDQ 151
S +TL+ L +
Sbjct: 621 SSITCNTLVVGLSE 634
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ EAR + + M NG+ P+V TY+ + EA E+L +K G+ P+
Sbjct: 248 YCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPN 307
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
YT ++D K G + E ++ + RG+T ++V TL+
Sbjct: 308 HVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFR 367
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + IP +IT+ +I C VG +++ LL M E P+ Y ++I
Sbjct: 368 ALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSII 420
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA +M + L P+ TYTA++DG+CKVG V LL E E+ + PNV+T +
Sbjct: 361 EAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSII 420
Query: 94 N-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
N ++D IP + +I C GK + A L M G
Sbjct: 421 NGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLK 480
Query: 137 PSRTLYDTLIKKLDQ 151
+ L+D L+ L +
Sbjct: 481 VNNVLFDVLVNNLKR 495
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 28/167 (16%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
+EA+ V M + G PN TY I+ A E+ +K+ + P T +
Sbjct: 569 YEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTL 628
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV----------------TLIHLH-NVIDIGH 100
+ G + G + M +LNE G+ PN+V ++ +H ++D+G
Sbjct: 629 VVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGL 688
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+NN+I C + KA +L M G + Y+ LI+
Sbjct: 689 KINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIR 735
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 38/153 (24%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-RGVTPNV------- 86
A +++ ++ +GL D+ +Y +++GFCK G ++ LL+E E RGV +V
Sbjct: 166 ALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDR 225
Query: 87 ----------VTLIHLHNVIDI--------------------GHIPRTITFNNVIQALCG 116
LI +I G +P +T+++++ LC
Sbjct: 226 IKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCK 285
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G++ +A LL M + G P+ Y TLI L
Sbjct: 286 DGRLSEAQELLREMKKMGVDPNHVAYTTLIDSL 318
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 47/193 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D ++ M + +PNV TY+ + EA ++ + + + P+
Sbjct: 388 YCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPN 447
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
Y Y ++DG+CK G+ +L NE G+ N V L++ L
Sbjct: 448 AYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLK 507
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKAL-------------------LLLFLMYEHG 134
+V G + + + +++ GK AL +L+ + EHG
Sbjct: 508 DVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHG 567
Query: 135 KIPSRTLYDTLIK 147
K ++++Y +I+
Sbjct: 568 KYEAKSVYSGMIE 580
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----- 88
+A +L + DG D TY A++ G+C+ + + + + GV+PN+VT
Sbjct: 710 KATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLL 769
Query: 89 --------LIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ + D G P T++ +I +G +++ L M G +
Sbjct: 770 GGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFV 829
Query: 137 PSRTLYDTLIK------KLDQ 151
P + Y+ LI K+DQ
Sbjct: 830 PKTSTYNVLISDFAKVGKMDQ 850
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 25/154 (16%)
Query: 18 MFDNGYHPNVTTYTIL-EAYEMLMNV-------KNDGLKPDVYTYTAVMDGFCKVGRSNE 69
M + PNV T+ +L A+ + N+ +N ++ D TY V+ GFC+ G N+
Sbjct: 36 MLCSAVPPNVYTHNVLVHAWCKMGNLILALDLLRNVDVEVDTVTYNTVIWGFCQHGLVNQ 95
Query: 70 VMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQ 112
L+ +++ + +T L+ + N++ G I FN +I
Sbjct: 96 AFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLID 155
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G++ AL L+ M + G + Y+TLI
Sbjct: 156 GYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLI 189
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
N+ + G DV + ++DG+CK G + ++L+ + G+ ++V
Sbjct: 137 NLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIV------------- 183
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY--DTLIKKLD 150
++N +I C G+ DKA LL + E + + D IKK D
Sbjct: 184 -----SYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDD 230
>gi|115455181|ref|NP_001051191.1| Os03g0736200 [Oryza sativa Japonica Group]
gi|29788856|gb|AAP03402.1| putative fertility restorer-like protein [Oryza sativa Japonica
Group]
gi|108710950|gb|ABF98745.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113549662|dbj|BAF13105.1| Os03g0736200 [Oryza sativa Japonica Group]
gi|125587839|gb|EAZ28503.1| hypothetical protein OsJ_12484 [Oryza sativa Japonica Group]
Length = 406
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 42/191 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL----------------------EAYEM 38
C F +AR ++D M G P+ TYT+L EA +
Sbjct: 179 CRNGRFKDARFLLDQMERPGARCGPDSYTYTVLISSYCRIGVETGCRKAARRRIYEAGRL 238
Query: 39 LMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---------- 88
+ GL+PDV TY +++G CK R E+ +E + +G +PN VT
Sbjct: 239 FRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLRKGCSPNRVTYNSFVRYYSV 298
Query: 89 -------LIHLHNVIDIGHIPRT-ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
+ + ++ GH T T+ +I +LC +G+I +A + M E G +P
Sbjct: 299 VNEVDKAVKWMREMVARGHGGATSSTYTPIIHSLCEIGRISEARQFIIEMAESGHLPREH 358
Query: 141 LYDTLIKKLDQ 151
Y + ++++
Sbjct: 359 TYKLVKDEIEK 369
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK------------PD 50
C A +V D M G PN TY Y ++N + +K
Sbjct: 262 CKTYRVERAHEVFDEMLRKGCSPNRVTYNSFVRYYSVVNEVDKAVKWMREMVARGHGGAT 321
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
TYT ++ C++GR +E + + E E G P T + + I+ H
Sbjct: 322 SSTYTPIIHSLCEIGRISEARQFIIEMAESGHLPREHTYKLVKDEIEKAH 371
>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
Length = 859
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA +V M D P+ +Y L +A+ + + DG+ P
Sbjct: 377 YCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPT 436
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
V TY V+ G VG ++ + L + +ERGVTPN ++ ++
Sbjct: 437 VVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWK 496
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ G T+ FN +I LC +GK+ +A + M E G P Y TL
Sbjct: 497 EILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTL 548
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 33/165 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A ++ D M G N+ L EA + + + + LKPD
Sbjct: 342 YCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPD 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+Y ++DG+C+ G+ ++ L E + G+TP VV T+N V
Sbjct: 402 CYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVV------------------TYNTV 443
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSR----TLYDTLIKKLDQ 151
I+ L VG D AL L LM E G P+ T+ D K D
Sbjct: 444 IKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDS 488
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KP 49
Y + DF +V+ M + G NV T T+L EA ++L V+ D L
Sbjct: 271 YVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVV 330
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLH------------- 93
D Y ++DG+C++GR + + + +E + G+ N+V TLI +
Sbjct: 331 DERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVF 390
Query: 94 -NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D P ++N ++ C GK+ KA +L M G P+ Y+T+IK L
Sbjct: 391 VGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGL 447
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA V D M + G P+ TY L EA+++ ++ + +
Sbjct: 518 CKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASI 577
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y +++DG K+ + N+V +LL E RG++PNVV T+ +I
Sbjct: 578 EMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVV------------------TYGTLI 619
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C K+DKA L F M E G P+ + ++ L
Sbjct: 620 SGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSL 657
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIHLHNV--------------I 96
Y +DG CK G+ +E +L+ + RG P+ TLIH +V +
Sbjct: 720 YNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEML 779
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G IP +N +I LC +G ID+A L + +Y+ G +P+ Y+ LI
Sbjct: 780 EKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILI 829
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EAR V+ + G+ P+ TY L EA+++ + GL P++
Sbjct: 728 CKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNI 787
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y A+++G CK+G + L + ++G+ PN V T+N +I
Sbjct: 788 TIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAV------------------TYNILI 829
Query: 112 QALCGVGKIDKALLLLFLMYEHG 134
C +G +DKA L M E G
Sbjct: 830 GCYCRIGDLDKASRLREKMTEEG 852
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA ++ M ++ Y L + ++L+ ++ GL P+
Sbjct: 552 YCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPN 611
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---------------------- 88
V TY ++ G+C + ++ L E IERG TPNVV
Sbjct: 612 VVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILD 671
Query: 89 ------LIHLHNVID------------------------IGHIPRTITFNNVIQALCGVG 118
++ +HN + I +N I LC G
Sbjct: 672 KMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSG 731
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K+D+A +L ++ G +P Y TLI
Sbjct: 732 KLDEARSVLSVLMSRGFLPDNFTYCTLI 759
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ PDVY + V++ C+VGR + ME+L + ++ G+ PNVV
Sbjct: 221 GIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVV------------------ 262
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHG 134
T+N ++ G G + +L LM E G
Sbjct: 263 TYNGLVNGYVGRGDFEGVERVLRLMSERG 291
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA K+ D M + G PN+T Y L A + + GL P+ TY ++
Sbjct: 770 EAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILI 829
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV 87
+C++G ++ L + E G++ ++
Sbjct: 830 GCYCRIGDLDKASRLREKMTEEGISTRII 858
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 84/216 (38%), Gaps = 69/216 (31%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEML----------MN 41
C +A +V++ M D+ + PNV TY TIL+ A EM+ +N
Sbjct: 233 CKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLN 292
Query: 42 VKN-----DGL---------------------KPDVYTYTAVMDGFCKVGRSNEVMELLN 75
V DGL +PDV TY+++++G CK G+ E +E +
Sbjct: 293 VVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVR 352
Query: 76 EAIERGVTPNVVTLIHL-HNVIDIGHI---------------------PRTITFNNVIQA 113
E G PN VT L H + G + P T+N +I
Sbjct: 353 EMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGG 412
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G+ID AL M G P Y T+++ L
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGL 448
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK--PDVYTYTA 56
+ ++++ M PNV +Y L EA E++ ++ + G + PD+ TY+
Sbjct: 28 DCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYST 87
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIG 99
++ G+CK G+ E ELL E I RG+ P+ + + +I G
Sbjct: 88 LLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAG 147
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ITFN +I C ++ A LL M G Y+TL+ L
Sbjct: 148 CCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGL 197
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 29/139 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + A ++ M +G +V TY L EA ++L +K G PDV
Sbjct: 163 CREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDV 222
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y++ + G CK G+ + ++L + + D H P +T+N ++
Sbjct: 223 VAYSSFVYGLCKSGKVLDAHQVLEQ------------------MRDSHHDPNVVTYNTIL 264
Query: 112 QALCGVGKIDKALLLLFLM 130
LC GKID AL ++ M
Sbjct: 265 DGLCKSGKIDTALEMMEQM 283
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + EA +++ M G P++ TY+ L E+ E+L V + GL+P
Sbjct: 56 CKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRP 115
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------L 92
D YT V+ CK R E +ELL E I G P ++ TLI L
Sbjct: 116 DALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLL 175
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +T+N ++ LC G++ +A LL M G P Y + + L
Sbjct: 176 QKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGL 232
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A +L + G+K DV TY +MDG CK GR E +LL G P+VV
Sbjct: 171 ADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVA------ 224
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ + LC GK+ A +L M + P+ Y+T++ L
Sbjct: 225 ------------YSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGL 267
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------- 92
G P+ T+ A+++GF K GR + LL R + PNVV+ L
Sbjct: 5 GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEA 64
Query: 93 ----HNVIDIG--HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++I G P +T++ ++ C GK++++ LL + G P +Y ++
Sbjct: 65 EELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVV 124
Query: 147 KKL 149
L
Sbjct: 125 ASL 127
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+KV+++M G+ PN TY L +A ++L + +DG+ D +TY +
Sbjct: 301 EAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLY 360
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVIDIGHI 101
G+C+ G+ N ++L + GV P++ T L+ L ++ +
Sbjct: 361 QGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETV 420
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
IT+N +I+ +C K++ A L + G P Y T++ L ++
Sbjct: 421 VGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRK 471
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
+C+ N EA ++D + GY PNV Y TI++ A ++L +++ G++PD
Sbjct: 153 FCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPD 212
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV--------------- 95
V TY +++ G+ +L++ + G+ P+V+T + +V
Sbjct: 213 VITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYD 272
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I P +T+N++I LC G +D+A +L M G P+ Y+TL+
Sbjct: 273 EMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLV 325
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 28/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A V+++M G P+V TY L + +L ++ G+ PDV
Sbjct: 189 CENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDV 248
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------LIH---------LHN 94
T++A++D F K G+ E + +E I+R V PN+VT IH L+
Sbjct: 249 ITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNF 308
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ G P +T+N ++ C ++D A+ +L +M G Y+TL
Sbjct: 309 MVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTL 359
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ D+Y+++ ++D FC+ R + + L + ++ G P++VT L N
Sbjct: 103 GISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEA 162
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +G+ P + +N +I +LC ++D AL +L M + G P Y++LI +
Sbjct: 163 MSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITR 222
Query: 149 L 149
L
Sbjct: 223 L 223
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC F A KV+ M G P++ T+ +L +A L +++
Sbjct: 363 YCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVG 422
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ TY ++ G CK + + L +GV+P+V+T
Sbjct: 423 IITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVIT 460
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ M G N+ TY I +A +++ ++ G+ PD T+T +MD
Sbjct: 204 ANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMD 263
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
+CK G + ELL E ++RG+ P V ITFN ++ C G
Sbjct: 264 AYCKTGEMVKAHELLREMLDRGLQPTV------------------ITFNVLMNGFCMSGM 305
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ LL M E G +P+ T Y++L+K+
Sbjct: 306 LEDGERLLAWMLEKGIMPNTTTYNSLMKQ 334
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A K+ D M P+ YT ++EA ++ + + G++PD
Sbjct: 90 FCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPD 149
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
TYT ++DG+CK G + L N+ ++ G+TPNVVT LH
Sbjct: 150 EVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLH 209
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G T+N+++ LC G I +A+ L+ M G P + TL+
Sbjct: 210 EMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLM 262
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A +V+ M + G P+ YT L AY++ ++ + PD
Sbjct: 56 CKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDF 115
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHN- 94
YTAV+ G C+ G+ E ++ N+ RGV P+ VT LHN
Sbjct: 116 IAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQ 175
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +T+ + LC +G++D A LL M G + Y++L+ L
Sbjct: 176 MVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGL 230
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + K+I M G PN+ TY + +A +L + N G+ PD
Sbjct: 20 YCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPD 79
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
YT ++DGFCK+G +L +E ++ + P+ + + +
Sbjct: 80 TVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFN 139
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P +T+ +I C G+++KA L M + G P+ Y L L
Sbjct: 140 KMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGL 195
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
+K G PDV +Y+ V++G+C G +V++L+ E +G+ PN+
Sbjct: 1 MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLY-------------- 46
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N++I LC GK+D A +L M G +P +Y TLI
Sbjct: 47 ----TYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLI 87
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 54/150 (36%), Gaps = 41/150 (27%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
YC + +A +++ M D G P V T+ +L M+GF
Sbjct: 265 YCKTGEMVKAHELLREMLDRGLQPTVITFNVL------------------------MNGF 300
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRT 104
C G + LL +E+G+ PN T L + G +P +
Sbjct: 301 CMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDS 360
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
T+N +I+ C + +A L M E G
Sbjct: 361 NTYNILIKGHCKARNMKEAWFLHKEMAEKG 390
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K D +++ M G PNV +YTI EAY +L +++ G KPD
Sbjct: 216 FGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPD 275
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-- 98
V T+T ++ C GR ++ + + P+ VT I L +V+++
Sbjct: 276 VVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWN 335
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G+ +++ V+ ALC VG++D+AL + M E G P + Y++LI
Sbjct: 336 AMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLIS 389
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA E+ + DG+ P V TY+ +M F K + V+ LLNE RGV PNV +
Sbjct: 189 EAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICI 248
Query: 94 NVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
V+ D G P +T +IQ LC G++ A + + M +
Sbjct: 249 RVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQK 308
Query: 137 PSRTLYDTLIKK 148
P R Y TL+ K
Sbjct: 309 PDRVTYITLLDK 320
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-----------KPDVYTYTAVMDGF 61
++ + M + G +P++ +YTIL NDGL +PD+ Y ++DG
Sbjct: 927 QLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGL 986
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVT----LIHL-------------HNVIDIGHIPRT 104
K R E + L NE ++G+ PN+ T ++HL ++ G P
Sbjct: 987 GKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSV 1046
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N +I+ G D A M G P+ + Y L +L
Sbjct: 1047 FTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTYMQLPNQL 1091
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 28/163 (17%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+V + M +GY+ N+ +YT + EA + +K G+ P+ Y+Y +++ GF
Sbjct: 332 EVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGF 391
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRT 104
K + +EL N G +PN T + N + G +P
Sbjct: 392 LKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDV 451
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
N V+ +L G G++ A + + + G P Y +IK
Sbjct: 452 AAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIK 494
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E KV M GY TY + +A ++ N+ ++G P TY ++
Sbjct: 819 EMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLL 878
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNV--------------IDIGHI 101
DG K G+ + L NE +E G PN L++ H + ++ G
Sbjct: 879 DGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGIN 938
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P ++ +I LC G+++ L ++E G P +Y+ LI L +
Sbjct: 939 PDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKS 989
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + EA M ++G P+V L EA+++ +K ++P
Sbjct: 495 CCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEP 554
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY ++ G + G+ EVM+LL E + R + P P IT+N
Sbjct: 555 TNGTYNTLLSGLGREGKVKEVMQLLEE-MTRTIYP-----------------PNLITYNT 596
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
V+ L G+++ A+ +L+ M E G P + Y+T++ L ++
Sbjct: 597 VLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKE 639
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 29/146 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A+ V M + P+ TY L E+ + DG ++
Sbjct: 287 CDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNI 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YTAV+D C+VGR +E + + +E E+G++ P ++N++I
Sbjct: 347 VSYTAVVDALCQVGRVDEALAVFDEMKEKGMS------------------PEQYSYNSLI 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIP 137
D+AL L M G P
Sbjct: 389 SGFLKADMFDRALELFNHMNACGPSP 414
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-- 92
A + +K G+ PD TYT ++ K +++E M ++ +E G P+V+ L L
Sbjct: 470 AKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLID 529
Query: 93 ---------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
H + ++ P T+N ++ L GK+ + + LL M P
Sbjct: 530 TLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPP 589
Query: 138 SRTLYDTLIKKLDQ 151
+ Y+T++ L +
Sbjct: 590 NLITYNTVLDCLSK 603
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG----------VTP 84
A ++ +K G PD +TY ++D K R E++++ E +G +
Sbjct: 785 AEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIIS 844
Query: 85 NVVTLIHLHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+V L ID+ G P T+ ++ L GK+ A L M E+G P
Sbjct: 845 GLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEP 904
Query: 138 SRTLYDTLI 146
+ T+Y+ L+
Sbjct: 905 NCTIYNILL 913
>gi|115482834|ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
gi|31432949|gb|AAP54520.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|62733610|gb|AAX95727.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa Japonica Group]
gi|125575336|gb|EAZ16620.1| hypothetical protein OsJ_32092 [Oryza sativa Japonica Group]
Length = 507
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
K++D M NG P++ TY +L A +L + + G P V +T ++DG
Sbjct: 308 KLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGL 367
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHNVIDIGHIPRT 104
+ G +E +++G P+VV +++ G +P
Sbjct: 368 SRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPNV 427
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I LC VG+ DKA LL M G P+ T+Y TL+ +L
Sbjct: 428 YTYNSMICGLCIVGEFDKACSLLKDMESRGCTPNFTVYSTLVSRL 472
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKN----DGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
F N ++ + T +E Y ++ V +G PDV TY VM + + ++ +LL
Sbjct: 251 FRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLRKLDQFHKLL 310
Query: 75 NEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGV 117
+E + G+ P++ T L+H L+ + D+G +P + F N+I L
Sbjct: 311 DEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRA 370
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G ++ M + G P Y +I
Sbjct: 371 GNLEACKYFFDEMVKKGCQPDVVCYTVMI 399
>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
Length = 601
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 27/155 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A KV D M G PNV TY +L EA + + + G+ PDV
Sbjct: 231 CKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDV 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ G V + M LL E I+ TL+ P +TFN+VI
Sbjct: 291 VTYNTLIAGLSGVLEMDGAMGLLEEMIQGD------TLVE----------PDVVTFNSVI 334
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC +G++ +A+ + +M E G + + Y+ LI
Sbjct: 335 HGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLI 369
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + A +++ M +G HPNV Y+ L + ++ + G++PDV
Sbjct: 161 CDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDV 220
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+T +D CK GR + +++ + ++RG+ PNVV T+N +I
Sbjct: 221 IMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVV------------------TYNVLI 262
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G + +AL L M + G P Y+TLI L
Sbjct: 263 NCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGL 300
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN +YT++ EA +L +++ G++ DV TY ++ G C + +EL
Sbjct: 113 PNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALEL 172
Query: 74 LNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCG 116
L E GV PNV+ L + +G P I F I LC
Sbjct: 173 LGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCK 232
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+I KA+ + +M + G P+ Y+ LI L
Sbjct: 233 KGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCL 265
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEA-----YEM-----LMN--VKNDGL- 47
C C + EA + + M D G P+V TY L A EM L+ ++ D L
Sbjct: 264 CLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLV 323
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNV----- 95
+PDV T+ +V+ G CK+GR + + + ERG N+VT + +H V
Sbjct: 324 EPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMN 383
Query: 96 -----IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
I G P + T++ +I + ++D+A + L M + G
Sbjct: 384 LMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRG 427
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ +YT VM G C R++E + LL GV +VV T+
Sbjct: 112 RPNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVV------------------TY 153
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ LC ++D AL LL M G P+ +Y L++
Sbjct: 154 GTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLR 193
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 27/171 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKPDV 51
C +A V + M + G N+ TY L M MN+ ++ GL+PD
Sbjct: 338 CKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDS 397
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH----------------LHNV 95
+TY+ +++GF K+ + L +RG+ + I L N
Sbjct: 398 FTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNE 457
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D+ + ++ ++ C G I A LL M + G P Y LI
Sbjct: 458 MDMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILI 508
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I A ++L ++ ++GL PD TY+ +++ F K+G E +L + G P+V
Sbjct: 482 IKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVA---- 537
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
F+++I+ G+I+K L L+ M TL++ Q
Sbjct: 538 --------------VFDSLIKGYSAEGQINKILDLIHEMRAKNVAIDPKFICTLVRLPQQ 583
Query: 152 QP 153
P
Sbjct: 584 MP 585
>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
Length = 321
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A +++ M G+ PN TY +A + + ++ D
Sbjct: 90 FCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLD 149
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVIDIGH---- 100
VY YT ++DG C+ G+ E LL+E G P +++ + + I+ H
Sbjct: 150 VYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFK 209
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+P +TF ++ C +ID ALLLL M G P +Y+TLI L++
Sbjct: 210 RMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNR 267
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A ++++ M + G PN + + EAY + +++ G+ P +
Sbjct: 21 CKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPTI 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIP------RT 104
TY ++DGFCK + + +E+L E RG PN VT LH + G + R
Sbjct: 81 VTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRA 140
Query: 105 IT----------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T + +I LC GK+ +A LL M G +P Y+ ++ L
Sbjct: 141 MTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWL 195
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
+ EAY +L ++N G P Y A++ CK R NE +L G+ P+ +T
Sbjct: 166 LAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGM 225
Query: 89 --------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L+ L + G PR + +N +I AL G++ +A LL M G
Sbjct: 226 MVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRG 285
Query: 135 KIPSRTLYDTLIKK 148
P+ Y + K+
Sbjct: 286 LSPNSRTYALMRKQ 299
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA K+ M +G P+ T+ ++ +A +L +K+ GL P
Sbjct: 196 CKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPRE 255
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
Y ++D + GR +E LL E I RG++PN T
Sbjct: 256 VIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRT 292
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G P V T+ ++DG CK R + EL+ ERG PN + + + +
Sbjct: 5 GCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEA 64
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+G P +T+N +I C K+ +AL +L M G P+ Y+T +
Sbjct: 65 YGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHG 124
Query: 149 L 149
L
Sbjct: 125 L 125
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M G P+V TY+ L +A ++ + + +KPDVYT+ ++
Sbjct: 196 EAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILV 255
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HNVIDIGHI- 101
DGFCK G+ E + +++G+ PNVVT L N + G +
Sbjct: 256 DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVN 315
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T ++N +I C + K+D+A+ L M+ IP+ Y +LI L
Sbjct: 316 PDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGL 363
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNV----------KNDGLKPD 50
+C E + V M G PNV TY ++++ Y ++ V G+ PD
Sbjct: 258 FCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPD 317
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y +++GFCK+ + +E M L + +H N+I P +T+ ++
Sbjct: 318 TQSYNIMINGFCKIKKVDEAMNLFKK-------------MHCKNII-----PNVVTYTSL 359
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I LC GKI AL L+ M++ G P Y +++ L
Sbjct: 360 IDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDAL 398
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 36/184 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A + + M G +P+ +Y I+ EA + + + P+
Sbjct: 293 YCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPN 352
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH-IPRTI---- 105
V TYT+++DG CK G+ + ++L++E +RGV P+++T + + + H + + I
Sbjct: 353 VVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLT 412
Query: 106 --------------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ +IQ C G ++AL LL M ++G+IP Y+ +
Sbjct: 413 KLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEII 472
Query: 146 IKKL 149
I L
Sbjct: 473 ILSL 476
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 41/170 (24%)
Query: 18 MFDNGYHPNVTTYTIL------------------------EAYEMLMNVKNDGLKPDVYT 53
+ GY PNV T T L A ++L V ++P+V
Sbjct: 121 ILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVM 180
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVID 97
Y ++D CKV NE +L +E + G++P+VVT I L N +
Sbjct: 181 YNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMI 240
Query: 98 IGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I P TFN ++ C GK+ + + +M + G P+ Y +L+
Sbjct: 241 LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLM 290
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 9 FEARKVIDYMFD-NGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
FE K++ + N YH ++ + +E G+ ++ T +++ F ++G++
Sbjct: 61 FEFGKILGSLVKINCYHTAISLHRQMEL---------KGIASNLVTLNILINCFSQLGQN 111
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ +++G PNV+TL L I + +++ +I LC VG+ AL LL
Sbjct: 112 PLSFSVFANILKKGYDPNVITLTTL-----IKGLCLKVSYGTLINGLCKVGQARAALQLL 166
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
+ P+ +Y+T+I +
Sbjct: 167 RRVDGKLVQPNVVMYNTIIDSM 188
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+V + +F GY+ +V YT++ EA +L ++++G PD TY ++
Sbjct: 417 QVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSL 476
Query: 62 CKVGRSNEVMELLNEAIERGV 82
K ++ +LL E I RG+
Sbjct: 477 FKKDENDMAEKLLREMIARGL 497
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E ++ G+ P + TY + A+ + ++ GL P++
Sbjct: 517 CMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNI 576
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT+ +DG+C+ G S+ +++LN+ RG+ P++V +N +I
Sbjct: 577 ITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIV------------------AYNALI 618
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G + AL LL ++ + G P+ +Y++LI
Sbjct: 619 NGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLI 653
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K EA K+ M G+ PNV TY L AY +L +K +G+ +
Sbjct: 446 YCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCN 505
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
YTY +++G C V R EV +L + G P ++T + N
Sbjct: 506 DYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQ 565
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G P IT+ + I C G D AL +L + G P Y+ LI Q+
Sbjct: 566 QMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQE 624
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 25/151 (16%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+ ++N H + + + EA + +K G+KP + TY +++ G+CK G +E ++L +E
Sbjct: 402 FTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSE 461
Query: 77 AIERGVTPNVVTLIHLHNVIDIGHIPRT---------------------ITFNNVIQALC 115
G PNVVT I L G+I + T+N +I +C
Sbjct: 462 MPMEGFKPNVVTYITLMR----GYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGIC 517
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V ++ + +L G IP+ Y+++I
Sbjct: 518 MVDRVCEVDGMLKSFMSEGFIPTMMTYNSII 548
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C + + A +++ + +G PN Y +++ Y+ L +K G+ D
Sbjct: 621 FCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVAD 680
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI-------- 101
TYT ++DGF K G +EL +E + +G P+ T L H + G I
Sbjct: 681 TSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLE 740
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
P +N +I K+ +A L M G P T YD L+ K
Sbjct: 741 EMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVSK 795
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + A + +G P Y +L +AYE+ + GL P
Sbjct: 307 YCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPS 366
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH----------NVID 97
+ + V+ G R + + L E + G+ P+V T LIH H N+ D
Sbjct: 367 TFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLFD 425
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P T+N+++ C G +D+A+ L M G P+ Y TL++
Sbjct: 426 RMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMR 479
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 10 EARKVIDYMFDNGYHPNV-TTYTILEAYEMLMNVKN----------DGLKPDVYTYTAVM 58
EA +V D M D G +V T++ Y + V N DG+ P Y ++
Sbjct: 280 EALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLI 339
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNVIDIGHIP 102
G +VG + + EL + +G+ P+ L + L + +P
Sbjct: 340 RGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLP 399
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+NN+I C K+ +AL L M + G PS Y++L+
Sbjct: 400 DVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLL 443
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKPDV 51
C + EA+ V+ M P+V TY T+++ Y ++ VK G+ PDV
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDV 339
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
+TYT +++GFCK +E + L E ++ + P +VT L + +
Sbjct: 340 HTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE 399
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G IT++++I LC G +D+A+ L M + G P+ + L+ L
Sbjct: 400 MHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGL 454
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 29/147 (19%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+ID M D G NV TY+ L A + +K+ G++P+ +T+T ++DG C
Sbjct: 396 LIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLC 455
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
K GR + E+ + + +G NV T +NV+ GH C G +++
Sbjct: 456 KGGRLKDAQEVFQDLLTKGYHLNVYT----YNVMIDGH--------------CKQGLLEE 497
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKL 149
AL +L M ++G IP ++ +I L
Sbjct: 498 ALTMLSKMEDNGCIPDAVTFEIIIIAL 524
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A K++ + PNV Y+ + EAY + + G+ DV
Sbjct: 175 CKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADV 234
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ ++ GFC G+ E + LLNE + + + PNV T+N ++
Sbjct: 235 VTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVY------------------TYNILV 276
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
ALC GK+ +A +L +M + P Y TL+
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLM 311
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA +++ M +PNV TY IL EA +L + +KPD
Sbjct: 244 FCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD 303
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDIG----- 99
V TY+ +MDG+ V + + N GVTP+V T L N ++D
Sbjct: 304 VITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFK 363
Query: 100 ------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P +T++++I LC G+I L+ M++ G+ + Y +LI L
Sbjct: 364 EMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGL 419
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+ +AY + + G+ DV TY ++ GFC VG+ E + LLN+ + + + PNV
Sbjct: 1082 VSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVR---- 1137
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGK--IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N ++ ALC GK +D++L +L M ++G + ++ +I L
Sbjct: 1138 --------------TYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISAL 1183
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C+ ++ + GYHP+ T+T L +A + G +
Sbjct: 970 CFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQL 1029
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ +Y +++G CK+G + ++LL + R P+VV +N
Sbjct: 1030 NQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVV------------------MYNT 1071
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I ALC + KA L F M G Y+TLI
Sbjct: 1072 IIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLI 1108
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 18/101 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G++PD++T +++ FC +G+ +L + ++RG P+ TI
Sbjct: 956 GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPD------------------TI 997
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TF +I LC G+++KAL + G ++ Y TLI
Sbjct: 998 TFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLI 1038
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G++PD+ T +++ FC +G+ +L + ++RG P+ VTL
Sbjct: 89 GIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKA 148
Query: 90 IHLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+H H+ ++ G +++ +I +C +G A+ LL + P+ +Y T+I
Sbjct: 149 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDA 208
Query: 149 L 149
L
Sbjct: 209 L 209
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P + + ++D F K+ + + L + +G+ P+++TL L N
Sbjct: 57 PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G+ P T+T N +I+ LC G++ KAL + G ++ Y TLI
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLI 171
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A D + G+ N +Y L A ++L + KP+V
Sbjct: 140 CLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNV 199
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y+ ++D CK +E L +E +G++ +VVT ++ +I
Sbjct: 200 VMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVT------------------YSTLI 241
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C GK+ +A+ LL M P+ Y+ L+ L
Sbjct: 242 YGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 20/110 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A++V + GYH NV TY ++ EA ML ++++G PD
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDA 514
Query: 52 YTYTAVMDGFCK-------VGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
T+ ++ K VG +V E++ ++G TP++ H H+
Sbjct: 515 VTFEIIIIALFKKDENGGNVGFDKKVWEIVEH--KKGETPSITFKCHSHD 562
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPN-VTTYTILEAYEMLMNVKN----------DGLKP 49
C+C+ V+ + GY P+ VT T+++ + VK G +
Sbjct: 103 CFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 162
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ +Y +++G CK+G + ++LL + R PNVV ++
Sbjct: 163 NQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVV------------------MYST 204
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I ALC + +A L M G Y TLI
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 241
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLK 48
+C EA +++ M +PNV TY IL E+ ML ++++G K
Sbjct: 1111 FCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCK 1170
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+ T+ ++ + +++V +LL+E I RG+
Sbjct: 1171 ANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 29/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + +A++ D + D + P+V YT I EA + +K G+KP+V
Sbjct: 175 CRERRASQAQEFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNV 233
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
YTY+ V+D C+ G+ ++ E ++ G PN +T L+ +H
Sbjct: 234 YTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQ 293
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ +G P T+T+N +I+ C ++ A+ ++ LM + G P+ + ++TL
Sbjct: 294 MKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTL 344
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 30/149 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M D P+ ++IL +A E ++K D +PDV YT ++
Sbjct: 147 EAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLK-DKFEPDVIVYTNLV 205
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
G+C+ G +E + E G+ PNV T ++ VI +LC G
Sbjct: 206 RGWCRAGNISEAERVFGEMKVAGIKPNVYT------------------YSIVIDSLCRCG 247
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I +A + M + G P+ Y++L++
Sbjct: 248 QITRAHDIFAEMLDAGCQPNSITYNSLMR 276
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A + M D G PN TY L + ++ +K G +PD
Sbjct: 244 CRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDT 303
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI----DIGHIPR---- 103
TY +++ CK + ++++ ++G PN T L I D+ R
Sbjct: 304 VTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKK 363
Query: 104 ---------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+T+N +++ D L L M E+ P+ Y LI
Sbjct: 364 MKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLI 415
>gi|359497557|ref|XP_003635566.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like, partial [Vitis vinifera]
Length = 253
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 24 HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72
P++ TYTIL EA +L + G KPD Y Y +M G+C + + +E +
Sbjct: 17 KPDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIG 76
Query: 73 LLNEAIERGVTPNVV---TLI--------------HLHNVIDIGHIPRTITFNNVIQALC 115
+ + E GV P++V TLI L + ++GH P +T+ +++ LC
Sbjct: 77 VYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGLC 136
Query: 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G AL LL M G P+ Y+TL+ L
Sbjct: 137 REGNALGALALLEEMEAKGCSPNSCTYNTLLHGL 170
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA V M + G P++ TY L EA + L + G PD
Sbjct: 65 YCILDKGSEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPD 124
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHN 94
TYT++M+G C+ G + + LL E +G +PN T I L+
Sbjct: 125 AVTYTSLMNGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIELYG 184
Query: 95 VIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
V+ G + ++ ++ALC G++ +A + E T Y TL L
Sbjct: 185 VMKSGGMKLEKASYATFVRALCKEGRVAEAYEAFDYVVESKSFDDVTAYSTLENSL 240
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNVIDIGH--- 100
LKPD+ TYT ++D C E LL E G P+ T++ + ++D G
Sbjct: 16 LKPDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAI 75
Query: 101 -----------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I L G++ +A L +M E G P Y +L+ L
Sbjct: 76 GVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGL 135
Query: 150 DQQ 152
++
Sbjct: 136 CRE 138
>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
Length = 321
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A +++ M G+ PN TY +A + + ++ D
Sbjct: 90 FCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLD 149
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVIDIGH---- 100
VY YT ++DG C+ G+ E LL+E G P +++ + + I+ H
Sbjct: 150 VYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFK 209
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+P +TF ++ C +ID ALLLL M G P +Y+TLI L++
Sbjct: 210 RMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNR 267
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A ++++ M + G PN + + EAY + +++ G+ P +
Sbjct: 21 CKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIETMRSMGVSPTI 80
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIP------RT 104
TY ++DGFCK + + +E+L E RG PN VT LH + G + R
Sbjct: 81 VTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRA 140
Query: 105 IT----------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+T + +I LC GK+ +A LL M G +P Y+ ++ L
Sbjct: 141 MTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWL 195
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--- 88
+ EAY +L ++N G P Y A++ CK R NE +L G+ P+ +T
Sbjct: 166 LAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGM 225
Query: 89 --------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L+ L + G PR + +N +I AL G++ +A LL M G
Sbjct: 226 MVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRG 285
Query: 135 KIPSRTLYDTLIKK 148
P+ Y + K+
Sbjct: 286 LSPNSRTYALMRKQ 299
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------- 89
G P V T+ ++DG CK R + EL+ ERG PN +
Sbjct: 5 GCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEA 64
Query: 90 -IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ + +G P +T+N +I C K+ +AL +L M G P+ Y+T +
Sbjct: 65 YGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHG 124
Query: 149 L 149
L
Sbjct: 125 L 125
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA K+ M +G P+ T+ ++ +A +L +K+ GL P
Sbjct: 196 CKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPRE 255
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
Y ++D + GR +E LL E I RG++PN T
Sbjct: 256 VIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRT 292
>gi|125532572|gb|EAY79137.1| hypothetical protein OsI_34244 [Oryza sativa Indica Group]
Length = 508
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
K++D M NG P++ TY +L A +L + + G P V +T ++DG
Sbjct: 309 KLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGL 368
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHNVIDIGHIPRT 104
+ G +E +++G P+VV +++ G +P
Sbjct: 369 SRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPNV 428
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I LC VG+ DKA LL M G P+ T+Y TL+ +L
Sbjct: 429 YTYNSMICGLCIVGEFDKACSLLKDMESRGCTPNFTVYSTLVSRL 473
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 21/149 (14%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKN----DGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
F N ++ + T +E Y ++ V +G PDV TY VM +G+ N+ +LL
Sbjct: 252 FRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLGKLNQFHKLL 311
Query: 75 NEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGV 117
+E + G+ P++ T L+H L+ + D+G +P + F N+I L
Sbjct: 312 DEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRA 371
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G ++ M + G P Y +I
Sbjct: 372 GNLEACKYFFDEMVKKGCQPDVVCYTVMI 400
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 43/176 (24%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND---GLKPDVYTYTAVMD 59
V+ M + G PNV +Y L EA E+L + +D G PDV +YT V++
Sbjct: 145 VLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT-------------------------LIHLHN 94
GF K G S++ +E ++RG+ P+VVT +I
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEK 264
Query: 95 VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D IG P IT++ +I C GK+D+A+ LL M G P+ Y TLI
Sbjct: 265 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 320
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 41/157 (26%)
Query: 18 MFDNGYHPNVTTYT-----------------------ILEAYEMLMNVKNDGLKPDVYTY 54
M D G P+V TY+ ++E+ ++ + G+KPD+ TY
Sbjct: 222 MLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITY 281
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
+ ++DG+C G+ +E M+LL+ + G+ PN T+T++ +I
Sbjct: 282 STLIDGYCLAGKMDEAMKLLSGMVSVGLKPN------------------TVTYSTLINGY 323
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 324 CKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 360
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA K++ M G PN TY+ L +A + +++ G+ PD
Sbjct: 288 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 347
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN--------------- 94
+ TY ++ G + R+ EL E G + T I LH
Sbjct: 348 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQ 407
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY--------- 142
++D+ R TFN +I AL VG+ D+A L +G +P+ Y
Sbjct: 408 NLCLMDLKLEAR--TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 465
Query: 143 DTLIKKLDQ 151
L+++LDQ
Sbjct: 466 QGLLEELDQ 474
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P++ TY IL + L NV G + + T+T ++ G C R+++ M++
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + ++G IP ++NN++ LC + +AL LL +M +
Sbjct: 145 V-----------------LRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADD 187
Query: 134 ---GKIPSRTLYDTLI 146
G P Y T+I
Sbjct: 188 RGGGSPPDVVSYTTVI 203
>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
origanoides]
Length = 431
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D A+ V D + G P+V + L E + + + G++PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPD 211
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH---- 100
VYTY+ +++G CK + ++ E +E + +G+ PN VT L + +D+
Sbjct: 212 VYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYK 271
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 272 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLI 324
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+++ M P++ TY L +A++++ ++ GLKPD TYT ++B
Sbjct: 266 AKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIB 325
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
G CK G + E I+ + + V LI L ++ + P
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKP 385
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T T+ +I C G + K LL M G PS Y+ L+
Sbjct: 386 DTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 429
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A +ID M G P+ TYT L
Sbjct: 293 CKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDD 352
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + LKPD TYT +++ FCK G + +LL E
Sbjct: 353 VVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKE 412
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 413 MQRDGHAPSVVT 424
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 25/156 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
F RKV++Y+ Y V + YE ++ G +Y + +M FCK G
Sbjct: 107 FDTCRKVLEYLMKLKYFKLVWGF-----YEEILEC---GYPASLYFFNILMHRFCKDGDI 158
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNV 110
+ + + G+ P+VV+ L N ++ G P T++ +
Sbjct: 159 RVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVL 218
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I LC K+D A M G +P+ + TLI
Sbjct: 219 INGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLI 254
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 43/176 (24%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND---GLKPDVYTYTAVMD 59
V+ M + G PNV +Y L EA E+L + +D G PDV +YT V++
Sbjct: 145 VLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT-------------------------LIHLHN 94
GF K G S++ +E ++RG+ P+VVT +I
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEK 264
Query: 95 VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D IG P IT++ +I C GK+D+A+ LL M G P+ Y TLI
Sbjct: 265 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 320
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 41/157 (26%)
Query: 18 MFDNGYHPNVTTYT-----------------------ILEAYEMLMNVKNDGLKPDVYTY 54
M D G P+V TY+ ++E+ ++ + G+KPD+ TY
Sbjct: 222 MLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITY 281
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
+ ++DG+C G+ +E M+LL+ + G+ PN T+T++ +I
Sbjct: 282 STLIDGYCLAGKMDEAMKLLSGMVSVGLKPN------------------TVTYSTLINGY 323
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 324 CKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 360
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA K++ M G PN TY+ L +A + +++ G+ PD
Sbjct: 288 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 347
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN--------------- 94
+ TY ++ G + R+ EL E G + T I LH
Sbjct: 348 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQ 407
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY--------- 142
++D+ R TFN +I AL VG+ D+A L +G +P+ Y
Sbjct: 408 NLCLMDLKLEAR--TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 465
Query: 143 DTLIKKLDQ 151
L+++LDQ
Sbjct: 466 QGLLEELDQ 474
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P++ TY IL + L NV G + + T+T ++ G C R+++ M++
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + ++G IP ++NN++ LC + +AL LL +M +
Sbjct: 145 V-----------------LRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADD 187
Query: 134 ---GKIPSRTLYDTLI 146
G P Y T+I
Sbjct: 188 RGGGSPPDVVSYTTVI 203
>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
Length = 445
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EAR+ + M G PN TY + EA+E++ +++ G
Sbjct: 94 CSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTA 153
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN---------------- 94
T+ V++ CK GR +E +++ + R + PN++TL + LH
Sbjct: 154 VTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDI 213
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++++G P +TFN +++ C ++D A LL M P+ Y +++K +
Sbjct: 214 MVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIMVQKFAE 270
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA + D M + G+ P + T+ L A ++L + + KP+
Sbjct: 198 FCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPN 257
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TY+ ++ F ++GR E L + + G PN++ ++ + G +
Sbjct: 258 FVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLT 317
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T T+N++++ C +G++D+A +L M G +P T Y LI+ L
Sbjct: 318 VMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGL 373
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 30/148 (20%)
Query: 10 EARKVIDYMFDNGYHPNV-----------TTYTILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EAR ++ + GY PN+ T + A L + +G + + TY +++
Sbjct: 276 EARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLV 335
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI---------------- 101
+GFCK+GR +E +L E I G P+ T + + + G I
Sbjct: 336 EGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFMVMLQVTRAVES 395
Query: 102 --PRTITFNNVIQALCGVGKIDKALLLL 127
P TF +I+ LC +G++D+A L+L
Sbjct: 396 ARPDPATFVKLIEKLCELGEMDRAALVL 423
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHP-------NVTTYTILEAY---EMLMNVKNDGLKPDV 51
+C +F EA+++++ D G P N+ EA E ++ KP+
Sbjct: 24 HCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHLHRMDCKPNS 83
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
+Y ++D C GR E E L +RGV PN VT L V
Sbjct: 84 VSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGV 143
Query: 96 ID-IGHIPRTITFNNVIQALCGVGKIDKA 123
++ G +TFN V++ LC G+ D+A
Sbjct: 144 MESAGFALTAVTFNPVVEFLCKSGRPDEA 172
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 20/118 (16%)
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG------------ 99
+TY ++ G C G +E L+ E + G++P +L+ LHN++ G
Sbjct: 15 FTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPG--SLVVLHNLMLKGFSEAGFVDEAKS 72
Query: 100 HI------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
H+ P ++++N +I ALC G+I +A L M + G P+R Y+ + L +
Sbjct: 73 HLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGK 130
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A +V M +G PN Y L +A ++ + + ++G P
Sbjct: 449 FCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPT 508
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY ++DG CK + E L E +ERG P++ T L
Sbjct: 509 IITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWD 568
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G + N +I LC GK+D+A + M E P+ Y+TL+
Sbjct: 569 EILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLM 621
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 18/115 (15%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+E+L + +N G + DV++Y+++++ FCK GR+++ E+ ++ G PN
Sbjct: 423 AFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPN--------- 473
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
H+ +N +I C V KI+ A+ + M +G P+ Y+TLI L
Sbjct: 474 ----SHV-----YNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGL 519
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A K+ M NG P + TY L EA + + G KPD
Sbjct: 484 FCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPD 543
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHI-------- 101
+ TY +++ G C+ + + + + +E ++ G+ +V V I +H + G +
Sbjct: 544 IRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYL 603
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N ++ +G IDKA L + ++G P Y+T IK L
Sbjct: 604 EMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGL 659
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA + M + G+ P++ TY L A + + + GL+ DV
Sbjct: 520 CKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDV 579
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
+ ++ G C G+ +E + E E+ +PN+VT L +
Sbjct: 580 MVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTA 639
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G P +T+N I+ LC + + +LLL + G +P+ + L++ +
Sbjct: 640 ILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAV 694
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
++ +E L V++ G P++ TY ++DG CK+GR E E+ + +
Sbjct: 248 MKVWEQL--VRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMAN------------ 293
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
H T+T+ +I LC G +D A + M + G + ++Y++LIK
Sbjct: 294 ------NHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIK 342
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 32/155 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F EA +V M N + + TY IL A + ++ GL DV
Sbjct: 275 CKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDV 334
Query: 52 YTYTAVMDGFCKVGRSNEVMELLN----EAIERGVTPNVVT---------------LIHL 92
Y +++ GFC+VGR+ E + + I + T N++T L L
Sbjct: 335 SVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQL 394
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
N D P +TF +I LC G ++A +L
Sbjct: 395 EN--DASCSPDKVTFGTLIHGLCENGYANRAFEIL 427
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEV----MELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
G P V ++ ++D F + R ++ L + A R + PN+ T
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQT------------- 160
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N ++++LC G +D+A+ L + G P R Y TL+ L
Sbjct: 161 -----YNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGL 203
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 29/128 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY I+ A + +++ G+ PD TY+ +M G K + + ++L
Sbjct: 156 PNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDL 215
Query: 74 LNEAIERGVTPNVVTLIHLHN------------------VIDIGHIPRTITFNNVIQALC 115
L+E GV + V L + V D G P T+ ++ LC
Sbjct: 216 LDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLC 275
Query: 116 GVGKIDKA 123
+G+ +A
Sbjct: 276 KLGRFKEA 283
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ N EA ++D M + GY P+ T+T L EA ++ + G +PD
Sbjct: 145 FCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 204
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY AV++G CK G + + LLN+ + + +VV T+I H+ + +++
Sbjct: 205 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFT 264
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P T++++I LC G+ A LL M E P+ +++LI ++
Sbjct: 265 EMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + + N G++PDV+TY++++ C GR ++ LL++ +ER + PNVVT L
Sbjct: 258 DALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLI 317
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+I P +T+N++I C ++D+A + LM +
Sbjct: 318 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL 377
Query: 137 PSRTLYDTLI 146
P Y+TLI
Sbjct: 378 PDVVTYNTLI 387
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M PN+ TY L EA ++ + + PD
Sbjct: 320 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY +++GFCK + + MEL + RG+ N V TLIH
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ G P +T+N ++ LC GK++KA+++
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 473
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ +D A+ V M +G HPN+ TY L +A + ++ ++PD
Sbjct: 425 FFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD 484
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY + +G CK G+ + +L +GV P+V I +N +
Sbjct: 485 IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDV------------------IAYNTM 526
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I C G ++A L M E G +P Y+TLI+
Sbjct: 527 ISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIR 563
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + M + G P+V TY+ L +A +L ++ + P+V T+ +++
Sbjct: 258 DALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLI 317
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVIDIGH-----------I 101
D F K G+ E +L +E I+R + PN+VT LI+ +H+ +D +
Sbjct: 318 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL 377
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N +I C K+ + L M G + + Y TLI
Sbjct: 378 PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C CN + +A +++ M + +PNV T+ ++EA ++ + + P
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VID----- 97
++ TY ++++GFC R +E ++ + + P+VVT L N V+D
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 98 -----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + T+T+ +I D A ++ M G P+ Y+TL+ L
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C ++ A ++ M GY P++ T L EA ++ + G +P
Sbjct: 109 CLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 168
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G + +++E + L+ + +G P++VT ++L
Sbjct: 169 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLL 228
Query: 94 NVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ G I + ++ VI +LC +D AL L M G P Y +LI L
Sbjct: 229 NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ ++YTY +++ C+ + + + +L + ++ G P++VTL
Sbjct: 95 GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTL---------------- 138
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N+++ C +I +A+ L+ M E G P + TL+ L Q
Sbjct: 139 --NSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 183
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPDVYTYTAVM 58
EAR V D M + G P+ TY TI++ + + NV+ G+ PD + Y ++M
Sbjct: 336 EARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLM 395
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI---------------- 101
DG+ K+ R ++ + + + G+ PN VT + +H + G
Sbjct: 396 DGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEV 455
Query: 102 -PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +++ +I L G++ +A L M + G IP Y +LI L
Sbjct: 456 PPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSL 504
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EARK++D M G P TY I EA E++ ++ G +P ++ +T+++
Sbjct: 231 EARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 290
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ GR+ E ++L E RG P+V I + ++I L G
Sbjct: 291 SYYLSKGRAEEAYQVLTEMTARGCAPDV------------------ILYTSLIDLLFSTG 332
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +A + M E G P Y T+I+ +
Sbjct: 333 RVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 365
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA++VI M + G P + +T L EAY++L + G PD
Sbjct: 258 FCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPD 317
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YT+++D GR E + + IE+G P+ +T+ +
Sbjct: 318 VILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPD------------------ALTYGTI 359
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IQ +G ++ A +L LM + G P Y++L+
Sbjct: 360 IQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLM 395
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 38/171 (22%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
EA K + M DNG P+V +T L + L+N +PDV+ YT+V+
Sbjct: 25 EAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKRFRPDVFLYTSVIH 84
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVID--------------------I 98
G+CK G L+ R VTP + +I VI
Sbjct: 85 GYCKAGD-------LDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTA 137
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P + + VI L G+I+ L M +P+RT Y +I L
Sbjct: 138 GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGL 188
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I EA E+ +K G P+V YTAV+DG K GR + ++ E P T
Sbjct: 124 IDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTV 183
Query: 92 L-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ ++ G +P TIT+ +I K+D+A LL +M G
Sbjct: 184 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 243
Query: 135 KIPSRTLYDTLIK---KLD 150
P+ Y +++ KLD
Sbjct: 244 PEPTAVTYGSIVHGFCKLD 262
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P TTYT++ +A ++ + G PD TYT ++DGF K + +E +L
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 235
Query: 74 LNEAIERGVTPNVVT---LIHLHNVIDI--------------GHIPRTITFNNVIQALCG 116
L+ + +G P VT ++H +D+ G P F +++
Sbjct: 236 LDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLS 295
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ ++A +L M G P LY +LI L
Sbjct: 296 KGRAEEAYQVLTEMTARGCAPDVILYTSLIDLL 328
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M D G P TYT L EA +++ ++ G+ PDV Y+A++ G
Sbjct: 485 MIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSM 544
Query: 67 SNEVMELLNEAIERGVTPNVVT 88
+ ++ E ++RG PN VT
Sbjct: 545 VDTAWDVFQEMMKRGCAPNEVT 566
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P + +YTIL EA+ + + G+ P+ +TYT+++ K GR E +L
Sbjct: 457 PTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKL 516
Query: 74 LNEAIERGVTPNV 86
+ + ++ GV P+V
Sbjct: 517 VEDMVKLGVNPDV 529
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + +A ++ M G PN T+YT+L EA + + ++ +G + D
Sbjct: 280 YAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQAD 339
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY+ ++ GFCK G+ ELL+E I++G PN V H+ +
Sbjct: 340 LVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVN 399
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ IG P +N VI+ C +G++ + + L M G PS + +I +Q
Sbjct: 400 EMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQ 458
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+ V+ M D G P++ Y L +AY++L ++ G +P+
Sbjct: 245 WCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPN 304
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YT ++ CK R E + E G ++V T++ +
Sbjct: 305 ATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLV------------------TYSTL 346
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I C GKI + LL M + G P++ +Y ++
Sbjct: 347 ISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIM 382
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKNDG---------LKPDVYTYTAVMD 59
+A +V+D M + G P+ + +L+A +VK KP V +T+++
Sbjct: 184 KAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTSLLY 243
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G+CK G+ E +L + + G+ P++V +NN++ K
Sbjct: 244 GWCKEGKLMEAKHVLVQMKDAGIEPDIV------------------VYNNLLGGYAQADK 285
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ A LL M G P+ T Y LI+ L
Sbjct: 286 MGDAYDLLKEMRRKGCEPNATSYTVLIQSL 315
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPD 50
+C + EA+ ++D M N N+ +Y I LEA+ +L + G++PD
Sbjct: 301 FCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPD 360
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
+Y+Y VMDG CK G ++ L+ I G+ P+ V TL+H LH
Sbjct: 361 IYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLH 420
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+I P T T N ++ +L G+I +A LL M E G
Sbjct: 421 EMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKG 461
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 28/171 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTI----------LEAYEMLMNVK-NDGLKPDVYTYTA 56
EA V+ M G P++ +Y I L MLM + +G+ PD TY+
Sbjct: 342 LLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYST 401
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPR------------ 103
++ G+C G+ E LL+E I +PN T + LH++ G I
Sbjct: 402 LLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKG 461
Query: 104 ----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
T+T N +I ALC G++DKA+ ++ M+ HG L ++ I +D
Sbjct: 462 YGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVD 512
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 38/180 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKND---GL 47
+C + +A K++D M ++G P+V T+ ILEA + +++ D GL
Sbjct: 227 FCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGL 286
Query: 48 -KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------- 89
P+V TY ++ GFCK G E L+ + ++R N + L
Sbjct: 287 PHPNVITYKLMLMGFCKEGMLEEAKTLV-DTMKRNA--NFINLESYNIWLLGLIRNGKLL 343
Query: 90 ---IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I L ++ IG P ++N V+ LC G + A +L+ LM +G +P Y TL+
Sbjct: 344 EAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLL 403
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+K FEA ++ M N PN T +L EA +L + G D
Sbjct: 406 YCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVD 465
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
T +++ C G+ ++ +E++N G L +L N IG +
Sbjct: 466 TVTCNIIINALCNNGQLDKAIEIVNGMWTHGSA----ALGNLGNSF-IGLVDDTISGKKC 520
Query: 102 -PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I LC G++D A M G P +YDT I
Sbjct: 521 TPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFI 566
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 29/132 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +AR++ D M G PN T+ IL + E+L ++ G+ P+
Sbjct: 158 CDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNN 217
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y ++ FCK G++++ +L+++ E G+ P+V TFN+ I
Sbjct: 218 VLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVE------------------TFNSRI 259
Query: 112 QALCGVGKIDKA 123
ALCG GKI +A
Sbjct: 260 SALCGSGKILEA 271
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A +V+ M G + + TY I E Y ++ ++ G+ PD
Sbjct: 569 FCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPD 628
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
V TY +++ C+ GR N+ +L+E +++G++PN+ +
Sbjct: 629 VCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSF 667
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 35/159 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDV 51
C +A+K M G P+ Y I A+++L +++ G +
Sbjct: 535 CKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTL 594
Query: 52 YTYTAVMDGFCKVGRSNEVMEL---LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
TY +++ G +G N++ EL ++E E+GV+P+V T+N
Sbjct: 595 QTYNSLILG---LGSKNQIFELYGLIDEMREKGVSPDVC------------------TYN 633
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+++ LC G+I+ A +L M + G P+ + + LIK
Sbjct: 634 HMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIK 672
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
+ P+ YT+ ++ C G + EL ++ RG PN T
Sbjct: 143 VSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPN------------------EFT 184
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
F +++ C G K L LL M G +P+ LY+TLI
Sbjct: 185 FGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLI 224
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVY 52
+KN FE +ID M + G P+V TY I +A +L + G+ P++
Sbjct: 606 SKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNIS 665
Query: 53 TYTAVMDGFCKV---GRSNEVMEL 73
++ ++ FCK S+EV E+
Sbjct: 666 SFRILIKAFCKACDFKASHEVFEI 689
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK-----------PDV 51
C D +++ M + N TYT+L M +K DG++ P+V
Sbjct: 197 CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNV 256
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI------ 98
YTY +++ C G+ N EL +E ERGV NVVT L V++
Sbjct: 257 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCR 316
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G P I++N +I C +G +DKA L M G+ PS Y+ LI +
Sbjct: 317 MKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 373
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN A ++ D M + G NV TY +LEA ++ +K DGL P++
Sbjct: 267 CNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNL 326
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI-------HLHNVIDI--- 98
+Y ++DG+C +G ++ L N+ G +P++ T LI + V D+
Sbjct: 327 ISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVRE 386
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+ ++ AL I+KA + M + G + +Y LI L
Sbjct: 387 MEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGL 441
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 28/162 (17%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
++ M G P+ TYTIL +A+++ +++ GL D+Y Y ++ G C
Sbjct: 383 MVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLC 442
Query: 63 KVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTI 105
VG E +L E + PN V T+I+ L + + G +P
Sbjct: 443 VVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVA 502
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++N+ I LC K +A +LL M E G PS ++++ + K
Sbjct: 503 SYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISK 544
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEA-----------YEMLMNVKNDGLKPD 50
YC+ + +A + + M +G P++ TY IL A +M+ ++ GL P
Sbjct: 336 YCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPS 395
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------LHN 94
TYT +MD + + ++ + + G+ ++ LIH L
Sbjct: 396 KVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFK 455
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D H+ P + +N +I C G +AL LL M E+G +P+ Y++ I
Sbjct: 456 SLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 508
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---- 89
+ +E+L ++ GL P+V YT ++DG CK G +L + E V N T
Sbjct: 169 KGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLI 228
Query: 90 ------------IHLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
I L+ + + G +P T+N++I C GK++ A L M E G
Sbjct: 229 NGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVA 288
Query: 137 PSRTLYDTLIKKLDQQ 152
+ Y+TLI L Q+
Sbjct: 289 CNVVTYNTLIGGLCQE 304
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
E + N +K DVY++ ++ G C+VG ++ E+L + E G++PNVV
Sbjct: 133 FEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVV----- 187
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I C G I++ L + M E + ++ Y LI
Sbjct: 188 -------------VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLI 228
>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
Group]
gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 543
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 31/168 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+ + D + + + P+V YT L EA + ++ G+ P+VYTYTAV+
Sbjct: 233 EAQAMFD-SYKSVFTPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVI 291
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVI-DIGHI 101
D + G+ ELL + I+ G PN T ++ +HN + +G
Sbjct: 292 DAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCE 351
Query: 102 PRTITFNNVIQALCGVGK--IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P IT+N +++ CG G+ +D A+ +L M G IP ++ ++K
Sbjct: 352 PDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLK 399
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 31/168 (18%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
+V + M G P++ TY L A +ML + G PD +T+ ++
Sbjct: 340 QVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLK 399
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT------LIHLHNVIDI-----------GHIP 102
+G N +L E PNVVT L +L +D+ G P
Sbjct: 400 LVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEP 459
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
T+ +I+A CG G +A + L M E + P++ +YD ++ L
Sbjct: 460 NVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALL 507
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKPDVYTYTAVMD 59
ARK+ + M + PNV TY +L ++ +M++ +K D G++P+V TY A+++
Sbjct: 410 ARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIE 469
Query: 60 GFCKVGRSNEVMELLNEAIE 79
FC G L E +E
Sbjct: 470 AFCGRGNWKRAHMTLREMVE 489
>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
Length = 544
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 31/168 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+ + D + + + P+V YT L EA + ++ G+ P+VYTYTAV+
Sbjct: 234 EAQAMFD-SYKSVFTPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVI 292
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVI-DIGHI 101
D + G+ ELL + I+ G PN T ++ +HN + +G
Sbjct: 293 DAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCE 352
Query: 102 PRTITFNNVIQALCGVGK--IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P IT+N +++ CG G+ +D A+ +L M G IP ++ ++K
Sbjct: 353 PDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLK 400
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 31/168 (18%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
+V + M G P++ TY L A +ML + G PD +T+ ++
Sbjct: 341 QVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLK 400
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT------LIHLHNVIDI-----------GHIP 102
+G N +L E PNVVT L +L +D+ G P
Sbjct: 401 LVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEP 460
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
T+ +I+A CG G +A + L M E + P++ +YD ++ L
Sbjct: 461 NVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALL 508
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKND----GLKPDVYTYTAVMD 59
ARK+ + M + PNV TY +L ++ +M++ +K D G++P+V TY A+++
Sbjct: 411 ARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIE 470
Query: 60 GFCKVGRSNEVMELLNEAIE 79
FC G L E +E
Sbjct: 471 AFCGRGNWKRAHMTLREMVE 490
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+ V D + G P+V ++ L E + + ++ G++PDVYTY+ +++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLIN 214
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIP 102
G CK + ++ EL +E ++ G+ PN VT L ++ P
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+N +I LC G + +A L M G P + Y TLI
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLI 318
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H V I A + + GL+P V ++ +M+G+ K+G +E L N
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNA 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M P Y+TLI
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLI 283
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A+ + D M G P+ TYT L A+E + + ++ D
Sbjct: 287 CKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDD 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P +IG T+ +I
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------------EIG------TYTMII 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C G + LL M G PS
Sbjct: 389 NEFCKKGDVWTGSKLLKEMQRDGYAPS 415
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A ++ D M DNG PN T+T L A E+ + + L PD+
Sbjct: 217 CKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT------ 104
TY ++ G CK G + +L +E +G+ P+ +T L GH+
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKR 336
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + +I LC G+ A +L M G P Y +I +
Sbjct: 337 MIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391
>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Brachypodium distachyon]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A+K++ M + G PN +YT L EA + +++ G +P V
Sbjct: 369 CRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSV 428
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNV---IDI------- 98
TY ++DG+ K G E E ++G+ P++ T L+H H V +D+
Sbjct: 429 VTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEE 488
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P + + ++ L G+ ++A L M G P TLY L+ L
Sbjct: 489 MKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSL 543
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 33/142 (23%)
Query: 18 MFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
M + G P V TYTIL EA M KN + DVY Y+AV++ +C+
Sbjct: 209 MENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKN--VAGDVYFYSAVINAYCRG 266
Query: 65 GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
G E+ +E + GV PN T+ +I C +G+I+ A
Sbjct: 267 GNVRRASEVFDECVGHGVEPN------------------ERTYGALINGFCKIGQIEAAE 308
Query: 125 LLLFLMYEHGKIPSRTLYDTLI 146
+LL M G ++ +++T+I
Sbjct: 309 MLLADMQLRGVGHNQIVFNTMI 330
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 52/208 (25%), Positives = 75/208 (36%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLM----------- 40
YC + A +V D +G PN TY L EA EML+
Sbjct: 263 YCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHN 322
Query: 41 ----NVKNDG---------------------LKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
N DG ++ D+YTY + G C+V R + +LL+
Sbjct: 323 QIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLH 382
Query: 76 EAIERGVTPNVV---TLIHLH--------------NVIDIGHIPRTITFNNVIQALCGVG 118
E+GV PN V TLI +H ++ G P +T+N +I G
Sbjct: 383 IMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNG 442
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +A M + G +P Y L+
Sbjct: 443 SIREAERFKKEMEKKGLVPDIYTYAGLV 470
>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 418
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+ V D + G P+V ++ L E + + ++ G++PDVYTY+ +++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLIN 214
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIP 102
G CK + ++ EL +E ++ G+ PN VT L ++ P
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+N +I LC G + +A L M G P + Y TLI
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLI 318
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H V I A + + GL+P V ++ +M+G+ K+G +E L N
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNX 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M P Y+TLI
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLI 283
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A+ + D M G P+ TYT L A+E + + ++ D
Sbjct: 287 CKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDD 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P +IG T+ +I
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------------EIG------TYTMII 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C G + LL M G +PS
Sbjct: 389 NEFCKKGDVWTGSKLLKEMQRDGYVPS 415
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A ++ D M DNG PN T+T L A E+ + + L PD+
Sbjct: 217 CKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHIPRT------ 104
TY ++ G CK G + +L +E +G+ P+ +T L GH+
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKR 336
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + +I LC G+ A +L M G P Y +I +
Sbjct: 337 MIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++A+K D M G PNV TY L E ++ + +G D+
Sbjct: 292 CMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI 351
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRT------ 104
+TY ++ G+C+VG+ +++ + R VTP+++T I LH + G I
Sbjct: 352 FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDD 411
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +N +I LC K++KA L + G P Y +I
Sbjct: 412 MRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMI 463
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A+ + D M G P+V TY L + ++ + GL D
Sbjct: 824 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 883
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT----- 104
+TY ++ G+C+ G+ N ++ N ++ GV+P++VT I L + + G I +
Sbjct: 884 AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVE 943
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
IT+N +IQ LC K+ +A L + G P Y T+I L ++
Sbjct: 944 DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRK 1002
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + A V+ M GY P++ T+ L +A+ +++ + G +P
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEP 174
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI- 101
+V Y ++DG CK G N +ELLNE ++G+ +VVT L + D +
Sbjct: 175 NVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARML 234
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF +I G +D+A L M + P+ Y+++I L
Sbjct: 235 RDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A+KV + M D G P++ TY IL +A M+ +++ + D
Sbjct: 894 YCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVD 953
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++ G C+ + E L +GV P+ + I +
Sbjct: 954 IITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYI------------------TM 995
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I LC G +A L M E G +PS +YD ++
Sbjct: 996 ISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLR 1032
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 66/172 (38%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A +V M G + TY L +A +L ++ + P+V
Sbjct: 720 CKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNV 779
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
+TA++D F K G E L E I R V PNV T L N
Sbjct: 780 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 839
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G P +T+N +I C +++ + L M G + Y+TLI
Sbjct: 840 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLI 891
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ D+Y++T ++ FC+ R + + +L + ++ G P++V
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIV------------------ 142
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +++ C V +I A L+ LM + G P+ +Y+TLI L
Sbjct: 143 TFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGL 186
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------- 94
++N G+ D+Y++T ++ FC+ R + + LL + ++ G P++VTL L N
Sbjct: 630 MENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNR 689
Query: 95 ------VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
++D G +P + +N VI LC ++ AL + + M + G Y+T
Sbjct: 690 FQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNT 749
Query: 145 LIKKLDQQ 152
LI L
Sbjct: 750 LISGLSNS 757
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A +++ M +P+V T+T L EA E+ + + P+
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGHI---- 101
TY ++++G C GR + + + +G PNVVT L ++D G
Sbjct: 282 VTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQR 341
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
T+N +I C VGK+ AL + M P
Sbjct: 342 MSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTP 384
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 75/209 (35%), Gaps = 63/209 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + A ++ M G+ P++ T L EA ++ ++ G P
Sbjct: 648 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 707
Query: 50 DVYTYTAVMDGFCK-----------------------------------VGRSNEVMELL 74
+V Y V++G CK GR + LL
Sbjct: 708 NVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLL 767
Query: 75 NEAIERGVTPNVV-------TLIHLHNVIDIGH----------IPRTITFNNVIQALCGV 117
+ ++R + PNV+ T + N+++ + +P T+N++I C
Sbjct: 768 RDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIH 827
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + A + LM G P Y+TLI
Sbjct: 828 GCLGDAKYMFDLMVSKGCFPDVVTYNTLI 856
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+A+E+ + +G+KPD TYT ++ G CK G E EL+ E G+
Sbjct: 439 KAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + +A + M + G PNV TY L +A +L ++ + P+V
Sbjct: 266 CNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH----- 100
T++A++D F K G+ E +L +E I+R + P++ T L H+ +D
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 385
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N +I+ C ++++ + L M + G + + Y+TLI+ L Q
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++D MF Y PN T+ L EA ++ + G +PD
Sbjct: 160 YCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPD 219
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHNVIDI----- 98
++TY V++G CK G + + LL + + + +VV L + NV D
Sbjct: 220 LFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFT 279
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N++I+ LC G+ A LL M E P+ + LI
Sbjct: 280 EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA M + + P+
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY ++ GFCK R E MEL E +RG+ N V TLI
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P IT++ ++ LC GK++KAL++ + + P Y+ +I+ +
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+K+ M +G P++ TY+IL +A + ++ ++PD+YTY +++
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ + +L +GV PNV I + +I C G
Sbjct: 509 GMCKAGKVEDGWDLFCSLSLKGVKPNV------------------IIYTTMISGFCRKGL 550
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++A L M E G +P+ Y+TLI+
Sbjct: 551 KEEADALFREMKEDGTLPNSGTYNTLIR 578
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A ++ M +V YT + +A + + N G++P+V
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHI--------- 101
TY +++ C GR ++ LL++ IER + PNVVT L + + G +
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T++++I C ++D+A + LM P+ Y+TLIK
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 403
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---LHN----- 94
G +PD+ T +++++G+C R +E + L+++ PN V TLIH LHN
Sbjct: 145 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 204
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIK 147
++ G P T+ V+ LC G ID AL LL M E GKI + +Y T+I
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIID 263
Query: 148 KL 149
L
Sbjct: 264 AL 265
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VI 96
D+Y+Y +++ FC+ + + +L + ++ G P++VTL L N ++
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 173
Query: 97 D----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D + + P T+TFN +I L K +A+ L+ M G P Y T++ L
Sbjct: 174 DQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 28/158 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G PNV +YTI EAY +L ++N+G KPDV T+T ++ C GR
Sbjct: 300 MEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGR 359
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-------GHIPRTITFNN 109
++ ++ + + P+ VT I L +V++I G+ + +
Sbjct: 360 ISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTA 419
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI ALC VG++ +AL + M + G +P + Y++LI
Sbjct: 420 VIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLIS 457
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + F EA K+ M +N P+V L EA+++ +K L+P
Sbjct: 563 CCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEP 622
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY ++ G + G+ EVM LL E PN+ IT+N
Sbjct: 623 TDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNL------------------ITYNT 664
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ LC G ++ AL +L+ M G IP + Y+T+I L ++
Sbjct: 665 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 707
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E KV + M GY TY + +A ++ N+ + G P TY ++
Sbjct: 887 EMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 946
Query: 59 DGFCKVGRSNEVMELLNEAIERG----------------VTPNVVTLIHL-HNVIDIGHI 101
DG K GR + L NE +E G + N + HL +++D G
Sbjct: 947 DGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGIN 1006
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P ++ +I LC G+++ L + E G P Y+ LI L +
Sbjct: 1007 PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKS 1057
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 29/146 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C+ +A+ V M + P+ TY T+L+ + E+ +K DG +V
Sbjct: 355 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNV 414
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTAV+D C+VGR E +E+ +E ++G+ +P ++N++I
Sbjct: 415 VAYTAVIDALCQVGRVFEALEMFDEMKQKGI------------------VPEQYSYNSLI 456
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIP 137
+ AL L M HG P
Sbjct: 457 SGFLKADRFGDALELFKYMDIHGPKP 482
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + + M + G N T Y IL + + ++ + G+ PD+ +YT ++
Sbjct: 957 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 1016
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D CK G+ N+ + + +E G+ P++ IT+N +I L
Sbjct: 1017 DTLCKAGQLNDGLTYFRQLLEMGLEPDL------------------ITYNLLIDGLGKSK 1058
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++++A+ L M + G +P+ Y++LI L +
Sbjct: 1059 RLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1091
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 63/200 (31%)
Query: 13 KVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++ + M +GY+ NV YT + EA EM +K G+ P+ Y+Y +++ GF
Sbjct: 400 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 459
Query: 62 CKVGRSNEVMELLN----------------------------EAIER-------GVTPNV 86
K R + +EL +AI+R G+ P+V
Sbjct: 460 LKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDV 519
Query: 87 VT----LIHL-------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
V L L H + +G P TIT+ +I+ K D+A+ + +
Sbjct: 520 VAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYD 579
Query: 130 MYEHGKIPSRTLYDTLIKKL 149
M E+ +P + ++LI L
Sbjct: 580 MIENNCVPDVLVVNSLIDTL 599
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 34/182 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI--------------LEAYEMLMNVKNDGL 47
+ + F +A ++ YM +G PN T+ + ++ YE++ K+ G+
Sbjct: 459 FLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM---KSKGI 515
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL--------------- 92
PDV AV+ G K GR + +E GV+P+ +T +
Sbjct: 516 VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 575
Query: 93 --HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+++I+ +P + N++I L G+ D+A + + + E P+ Y+TL+ L
Sbjct: 576 IFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLG 635
Query: 151 QQ 152
++
Sbjct: 636 RE 637
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
+ + G P++ TY +L EA + ++ G+ P++YTY +++ K G+
Sbjct: 1035 LLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGK 1094
Query: 67 SNEVMELLNEAIERGVTPNVVT 88
+ E ++ E + +G PNV T
Sbjct: 1095 AAEAGKMYEELLTKGWKPNVFT 1116
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + + M G PN+ TY L EA +M + G KP+V+TY A++
Sbjct: 1062 EAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALI 1121
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
G+ G ++ I G PN T H+H ++
Sbjct: 1122 RGYSVSGSTDSAYAAYGRMIVGGCLPNSST-CHIHELM 1158
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG----------VTP 84
A + +K G PD +TY ++D K R E++++ E +G +
Sbjct: 853 AEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIIS 912
Query: 85 NVVTLIHLHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+V L ID+ G P T+ ++ L G+I+ A L M E+G
Sbjct: 913 GLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKA 972
Query: 138 SRTLYDTLI 146
+ T+Y+ L+
Sbjct: 973 NCTIYNILL 981
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTYTAVM 58
E +++ M+ + Y PN+ TY TIL+ A +ML ++ G PD+ +Y V+
Sbjct: 642 EVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 701
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIG 99
G K R NE + + +++ + P+ TL L + + IG
Sbjct: 702 YGLVKEERYNEAFSIFCQ-MKKVLIPDYATLCTILPSFVKIG 742
>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 477
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D M +G+ P++ TY IL A +L +++ G++P V +T ++DG
Sbjct: 278 RLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGL 337
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHNVIDIGHIPRT 104
+ G+ ++E ++ G TP+VV + + G +P
Sbjct: 338 SRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNV 397
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I+ C GK +A LL M G P+ +Y TL+ L
Sbjct: 398 FTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 442
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 27 VTTYTILE-AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
V Y +++ YE ++ DG PDV TY VM ++G+++ + LL+E ++ G +P+
Sbjct: 235 VKQYKLIDWVYEQMLE---DGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPD 291
Query: 86 VVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ T L+H L+++ ++G P I F +I L GK++ +
Sbjct: 292 LYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMD 351
Query: 129 LMYEHGKIPSRTLYDTLI 146
+ G P Y +I
Sbjct: 352 ETVKVGCTPDVVCYTVMI 369
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK-----------PDV 51
C D +++ M + N TYT+L M +K DG++ P+V
Sbjct: 210 CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNV 269
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI------ 98
YTY +++ C G+ N EL +E ERGV NVVT L V++
Sbjct: 270 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCR 329
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
G P I++N +I C +G +DKA L M G+ PS Y+ LI +
Sbjct: 330 MKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 386
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN A ++ D M + G NV TY +LEA ++ +K DGL P++
Sbjct: 280 CNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNL 339
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI-------HLHNVIDI--- 98
+Y ++DG+C +G ++ L N+ G +P++ T LI + V D+
Sbjct: 340 ISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVRE 399
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+ ++ AL I+KA + M + G + +Y LI L
Sbjct: 400 MEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGL 454
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
++ M G P+ TYTIL +A+++ +++ GL D+Y Y ++ G C
Sbjct: 396 MVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLC 455
Query: 63 KVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIPRTI 105
VG E +L E + PN V T+I+ L + + G +P
Sbjct: 456 VVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVA 515
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++N+ IQ LC K +A +LL M E G PS ++++ + K
Sbjct: 516 SYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISK 557
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEA-----------YEMLMNVKNDGLKPD 50
YC+ + +A + + M +G P++ TY IL A +M+ ++ GL P
Sbjct: 349 YCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPS 408
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------LHN 94
TYT +MD + + ++ + + G+ ++ LIH L
Sbjct: 409 KVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFK 468
Query: 95 VIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D H+ P + +N +I C G +AL LL M E+G +P+ Y++ I+ L
Sbjct: 469 SLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQIL 524
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---- 89
+ +E+L ++ GL P+V YT ++DG CK G +L + E V N T
Sbjct: 182 KGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLI 241
Query: 90 ------------IHLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
I L+ + + G +P T+N++I C GK++ A L M E G
Sbjct: 242 NGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVA 301
Query: 137 PSRTLYDTLIKKLDQQ 152
+ Y+TLI L Q+
Sbjct: 302 CNVVTYNTLIGGLCQE 317
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
E + N +K DVY++ ++ G C+VG ++ E+L + E G++PNVV
Sbjct: 146 FEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVV----- 200
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I C G I++ L + M E + ++ Y LI
Sbjct: 201 -------------VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLI 241
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPDV 51
C + + EAR ++ M + G P+V TY T++ Y + M V + G PDV
Sbjct: 312 CKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDV 371
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
++++ +++G+CK R +E +L +E RG+ IP T+++N +I
Sbjct: 372 FSFSILVNGYCKAKRIDEAKQLFDEMTHRGL------------------IPDTVSYNTLI 413
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC + +A L M+ +G P+ Y L+ L +Q
Sbjct: 414 SGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQ 454
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M G P V TYT L EA+ +L +K + PD+ ++ ++
Sbjct: 249 EAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLI 308
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGHI 101
D CK G +E +L E GV P+V T L N +I G +
Sbjct: 309 DIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRM 368
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +F+ ++ C +ID+A L M G IP Y+TLI L Q
Sbjct: 369 PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQ 418
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M NGY PN+ TY+IL +A + ++N GLKPD+
Sbjct: 417 CQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDL 476
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
TY ++DG CK G+ + EL E +G+ PN
Sbjct: 477 VTYNIMIDGMCKYGKFKDARELFAELSVKGLQPN 510
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 28/164 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + EARKV + M G P+V +++IL EA ++ + + GL PD
Sbjct: 346 YCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPD 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+Y ++ G C+ R E EL + G PN+VT L + +
Sbjct: 406 TVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFR 465
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ G P +T+N +I +C GK A L + G P
Sbjct: 466 AMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQP 509
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 63/209 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C V+ + G PNV T++ L A E+ + G KP
Sbjct: 135 CFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKP 194
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELL----------------------------NEAIE-- 79
+V++Y+ ++ G C+VG++ EV++LL NEA+
Sbjct: 195 NVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIF 254
Query: 80 -----RGVTPNVVTLIHL-HNVIDIGH----------------IPRTITFNNVIQALCGV 117
G+ P VVT L H + ++G +P + F+ +I +C
Sbjct: 255 CKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKE 314
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++ +A ++L M E G P Y+TL+
Sbjct: 315 GEVSEARVILKTMTEMGVEPDVATYNTLM 343
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ DV + T +++ FC++ + +L + I+ G+ PNV+T L N
Sbjct: 121 GISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRA 180
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ G+ P +++ +I+ LC VGK + + LL M G P +Y+T++ +
Sbjct: 181 IELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDR 240
Query: 149 L 149
L
Sbjct: 241 L 241
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++A+K D M G PNV TY L E ++ + +G D+
Sbjct: 292 CMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI 351
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRT------ 104
+TY ++ G+C+VG+ +++ + R VTP+++T I LH + G I
Sbjct: 352 FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDD 411
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +N +I LC K++KA L + G P Y +I L
Sbjct: 412 MRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGL 466
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + A V+ M GY P++ T+ L +A+ +++ + G +P
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEP 174
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI- 101
+V Y ++DG CK G N +ELLNE ++G+ +VVT L + D +
Sbjct: 175 NVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARML 234
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF +I G +D+A L M + P+ Y+++I L
Sbjct: 235 RDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ D+Y++T ++ FC+ R + + +L + ++ G P++V
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIV------------------ 142
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +++ C V +I A L+ LM + G P+ +Y+TLI L
Sbjct: 143 TFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGL 186
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A +++ M +P+V T+T L EA E+ + + P+
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGHI---- 101
TY ++++G C GR + + + +G PNVVT L ++D G
Sbjct: 282 VTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQR 341
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
T+N +I C VGK+ AL + M P
Sbjct: 342 MSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTP 384
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+A+E+ + +G+KPD TYT ++ G CK G E EL+ E G+
Sbjct: 439 KAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 30/166 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA KV++ M NG+ P++ TY L EA E+ + G KPDV+TYT ++
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVIDI-GHI 101
GF + G+ M + E G PN+ T ++ + + I++ G
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFL-MYEHGKIPSRTLYDTLI 146
P +T+N ++ A+ G +D + +F M G +P R ++TLI
Sbjct: 452 PDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+DYM + G+ P++ TY L ++ E+L + G+KPD+ +Y V+
Sbjct: 647 KANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI 706
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+C+ R + + +E G+ P+V IT+N I +
Sbjct: 707 YAYCRNTRMRDASRIFSEMRNSGIVPDV------------------ITYNTFIGSYAADS 748
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++A+ ++ M +HG P++ Y++++
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 29/149 (19%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+++ M +G P+ TY L EA ++ +K G D TY A++D +
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
K R E M++LNE + G +P++V T+N++I A G +D+
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIV------------------TYNSLISAYARDGMLDE 367
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
A+ L M E G P Y TL+ ++
Sbjct: 368 AMELKNQMAEKGTKPDVFTYTTLLSGFER 396
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTY-----TILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
D+F +K M DN + + + A M ++ DG DVY+YT+++ F
Sbjct: 159 DWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAF 218
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
GR E + + + E G P ++T +NVI
Sbjct: 219 ANSGRYREAVNVFKKMEEDGCKPTLIT----YNVI 249
Score = 42.4 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A ++ M ++G P+V TY EA ++ + G +P+
Sbjct: 709 YCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768
Query: 51 VYTYTAVMDGFCKVGRSNE 69
TY +++DG+CK+ R +E
Sbjct: 769 QNTYNSIVDGYCKLNRKDE 787
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y N+ F E K+ D + G P++ T+ L E + +K G P+
Sbjct: 429 YGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
T+ ++ + + G + M + ++ GVTP++ T +N V
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLST------------------YNTV 530
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ AL G +++ +L M + P+ Y +L+
Sbjct: 531 LAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
Y F +A V M D G P+++TY T+L A ++L +++ KP+
Sbjct: 499 YSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPN 558
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT-PNVV---TLIHLHNVIDI-------- 98
TY +++ + G+ +M L E + GV P V TL+ + + D+
Sbjct: 559 ELTYCSLLHAYAN-GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAF 617
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P T N+++ + KA +L M E G PS Y++L+
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM 671
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + +++D M NG P+ + IL EA ++ GL P+
Sbjct: 321 YATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPN 380
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY VMD C+VG+ ++ M + I G+TPN + F +
Sbjct: 381 IVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPN------------------GVVFRTL 422
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I LC K DKA L M G P+ ++TL+ L ++
Sbjct: 423 IHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKE 464
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+ D M D G PN TY L EA + + DG++PDV TY +M C
Sbjct: 228 LFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLC 287
Query: 63 KVGRSNEVMELLNEAIERGVTPNVV---TLIH----------LHNVIDI----GHIPRTI 105
K GRS E ++ + +++G P+ TL+H +H ++D+ G P
Sbjct: 288 KNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHY 347
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
FN +I A G +D+A+L M + G P+ Y T++ L
Sbjct: 348 IFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDAL 391
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA + M +G P+V TY L EA ++ ++ G KPD
Sbjct: 251 YCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPD 310
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVID------- 97
Y ++ G+ G ++ +LL+ + G P+ ++ H ++D
Sbjct: 311 SSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFS 370
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P +T+ V+ ALC VGK+D A+ + G P+ ++ TLI L
Sbjct: 371 KMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGL 426
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY----EMLMNVKN-------DGLKP 49
C C+K D +A ++ M G PN + L + M+ KN ++
Sbjct: 427 CACDKWD--KAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQC 484
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV TYT ++DG+C G+ +E +LL + GV PN +T+N
Sbjct: 485 DVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPN------------------EVTYNT 526
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I C G+I+ A L M G P +Y T++ L Q
Sbjct: 527 IINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQ 568
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 32/157 (20%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKND----GLKPDVYTYTAVMDGFCKVGR 66
G PN +Y IL +A +L + D G PDV +YT V++G + G+
Sbjct: 162 GCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQ 221
Query: 67 SNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNN 109
++ L +E +++G++PN +T L+H + G P +T+N
Sbjct: 222 LDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNT 281
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LC G+ +A + M + G P ++Y TL+
Sbjct: 282 LMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLL 318
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 63/213 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A+ + D M +V TYT L EA ++L + DG+KP+
Sbjct: 462 CKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNE 521
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH----------------- 91
TY +++G+CK GR + L + +GV P +V T++H
Sbjct: 522 VTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLW 581
Query: 92 --------------------------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
HN+ I + TFN +I AL G+
Sbjct: 582 MIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGR 641
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+A L + G +P+ Y ++K L +Q
Sbjct: 642 HDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQ 674
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA K+ D M G P TY+ L EA E+ ++N+GL P+
Sbjct: 651 YCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPN 710
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ YTA++ G CK+G+ + V +L E G+ PN IT+ +
Sbjct: 711 VFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPN------------------KITYTIM 752
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I C +G + +A LL M +G P Y+ L K
Sbjct: 753 IDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQK 789
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + E +V+ M + G + +Y L EA+++ + +PD
Sbjct: 512 CERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDT 571
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNV 95
YTY +M G +G+ ++V LL+EA E G PNV T +
Sbjct: 572 YTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKN 631
Query: 96 IDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D + ++ +N +I A C +G + +A L M G +P+ Y +LI
Sbjct: 632 LDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLI 683
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EA + D M + +P+V TY +L EA E+L+ + + G P+ + A
Sbjct: 306 FEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNA 365
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
++DG+C+ G E + + +E +G+ PN V TFN ++Q C
Sbjct: 366 LIDGYCRKGDMGEALRVRDEMAMKGMKPNFV------------------TFNTLLQGFCR 407
Query: 117 VGKIDKALLLLFLMYEHG 134
++++A +L + G
Sbjct: 408 SNQMEQAEQVLVYILSSG 425
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 19/116 (16%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
++YE+ ++ G+ PDV+T+T ++ FCK GR + ++L + GV PNVV
Sbjct: 239 KSYEVF-DLACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVV------ 291
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+NNVI L G+ ++AL M PS Y LI L
Sbjct: 292 ------------TYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGL 335
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTY 54
N+ ++ +V D + G P+V T+T + +A ++ ++ G+ P+V TY
Sbjct: 235 NELHKSYEVFD-LACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTY 293
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLH----------NVID 97
V+DG K GR E + + + V P+VVT L+ L +
Sbjct: 294 NNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYS 353
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+G P + FN +I C G + +AL + M G P+ ++TL++
Sbjct: 354 MGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQ 403
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 29/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP- 49
YC K D EA +V D M G PN T+ L +A ++L+ + + GL
Sbjct: 370 YCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVN 429
Query: 50 -DVYTYT--AVMDGFCKVGRSNEVMELLNEAIERG---VTPNVVTLIHLHN---VIDI-- 98
DV +Y +M+ V V +LL+ I +TP VV L I++
Sbjct: 430 MDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWF 489
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G T+T N ++ LC G +++ +L M E G + R Y+TLI
Sbjct: 490 KLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLI 543
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 34 EAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
EA E+ + GL + T A++ G C+ G EV E+L + +E+G+ + ++ L
Sbjct: 483 EAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTL 542
Query: 93 -----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
++ P T T+N +++ L +GKID LL E+G
Sbjct: 543 IFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGF 602
Query: 136 IPSRTLYDTLIK 147
+P+ Y L++
Sbjct: 603 VPNVYTYALLLE 614
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
M NG PN TYTI+ EA E+L + +G+ PD TY A+ G+CK
Sbjct: 737 MSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCK 793
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EA +V+ M+ G+ PN + L EA + + G+KP+ T+
Sbjct: 341 FEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNT 400
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
++ GFC+ + + ++L + G++ N+
Sbjct: 401 LLQGFCRSNQMEQAEQVLVYILSSGLSVNM 430
>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 418
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+ V D + G P+V ++ L E + + ++ G++PDVYTY+ +++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH-----------IP 102
G CK + ++ EL +E ++ G+ PN VT L + +D+ P
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSP 274
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+N +I LC G + +A L M G P + Y TLI
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLI 318
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H V I A + + GL+P V ++ +M+G+ K+G +E L N
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M P Y+TLI
Sbjct: 257 VDLAMEIYXQMLSQSLSPDLITYNTLI 283
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A+ + D M G P+ TYT L A+E + + ++ D
Sbjct: 287 CKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDX 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P +IG T+ +I
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------------EIG------TYTMII 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C G + LL M G +PS
Sbjct: 389 NEFCKKGDVWTGSKLLKEMQRDGYVPS 415
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A ++ D M DNG PN T+T L A E+ + + L PD+
Sbjct: 217 CKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDL 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
TY ++ G CK G + +L +E +G+ P+ +T L
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTL 317
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 35/159 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLK 48
C EAR V D M G +P+V +Y I+ + +++++ DG+
Sbjct: 339 CKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLG---DGIA 395
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
PD+YT++ ++ + G ++ M + NE + GV P+VVT +
Sbjct: 396 PDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT------------------YT 437
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
VI ALC +GK+D A+ M + G P + Y LI+
Sbjct: 438 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQ 476
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +A+++I + +NG ++ ++ I++A + N G PD
Sbjct: 478 FCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPD 537
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y+ +MDG+C VG+ + + + + + G+ PNVV + +
Sbjct: 538 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV------------------VYGTL 579
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C +G+ID+ L L M + G PS LY+ +I L
Sbjct: 580 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 618
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 63/208 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K + + D M +G P++ T+++L +A + +++ G+KPD
Sbjct: 373 YATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 432
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------------------------- 85
V TYT V+ C++G+ ++ ME N+ I++GV P+
Sbjct: 433 VVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELIL 492
Query: 86 -----------------VVTLIHLHNVID----------IGHIPRTITFNNVIQALCGVG 118
+ L L ++D +G P + ++ ++ C VG
Sbjct: 493 EIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVG 552
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
K++KAL + M G P+ +Y TL+
Sbjct: 553 KMEKALRVFDAMVSAGIEPNVVVYGTLV 580
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 30/158 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGL--KPDVYTYTAVMDGFCKVGRSN 68
G P+V +Y+IL +A ++L + G PDV YT V+D F K G N
Sbjct: 181 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVN 240
Query: 69 EVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVI 111
+ +L E ++RG+ P++VT ++H L +++ G +P T+NN+I
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLI 300
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ +A+ + M H +P + L+ L
Sbjct: 301 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSL 338
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M + G P+ TY L EA + ++ + PDV
Sbjct: 269 CKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 328
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T +M CK G+ E ++ + +G P+V + L+ + ++ D+
Sbjct: 329 VTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDL 388
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P TF+ +I+A G +DKA+++ M +HG P Y T+I L
Sbjct: 389 MLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAAL 443
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL+ D+ ++ GFC+ R++E +++L LH ++G +P
Sbjct: 145 GLRVDIIIANHLLKGFCEAKRTDEALDIL-----------------LHRTPELGCVPDVF 187
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLI 146
+++ ++++LC GK +A LL +M E G + P Y T+I
Sbjct: 188 SYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A +V D M G PNV Y L E + + G+KP
Sbjct: 548 YCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPS 607
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
Y ++DG GR+ +E E G+ N T
Sbjct: 608 TILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCT 645
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + +A + M + G PNV TY L +A +L ++ + P+V
Sbjct: 250 CNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNV 309
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH----- 100
T++A++D F K G+ E +L +E I+R + P++ T L H+ +D
Sbjct: 310 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 369
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N +I+ C ++++ + L M + G + + Y+TLI+ L Q
Sbjct: 370 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 426
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++D MF Y PN T+ L EA ++ + G +PD
Sbjct: 144 YCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPD 203
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHNVIDI----- 98
++TY V++G CK G + + LL + + + +VV L + NV D
Sbjct: 204 LFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFT 263
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N++I+ LC G+ A LL M E P+ + LI
Sbjct: 264 EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 316
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA M + + P+
Sbjct: 319 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 378
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY ++ GFCK R E MEL E +RG+ N V TLI
Sbjct: 379 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 438
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P IT++ ++ LC GK++KAL++ + + P Y+ +I+ +
Sbjct: 439 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 494
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+K+ M +G P++ TY+IL +A + ++ ++PD+YTY +++
Sbjct: 433 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 492
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ + +L +GV PNV I + +I C G
Sbjct: 493 GMCKAGKVEDGWDLFCSLSLKGVKPNV------------------IIYTTMISGFCRKGL 534
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++A L M E G +P+ Y+TLI+
Sbjct: 535 KEEADALFREMKEDGTLPNSGTYNTLIR 562
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A ++ M +V YT + +A + + N G++P+V
Sbjct: 215 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 274
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY +++ C GR ++ LL++ IER + PNVVT L
Sbjct: 275 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 334
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I P T++++I C ++D+A + LM P+ Y+TLIK
Sbjct: 335 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 387
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---LHN----- 94
G +PD+ T +++++G+C R +E + L+++ PN V TLIH LHN
Sbjct: 129 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 188
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIK 147
++ G P T+ V+ LC G ID AL LL M E GKI + +Y T+I
Sbjct: 189 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIID 247
Query: 148 KL 149
L
Sbjct: 248 AL 249
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VI 96
D+Y+Y +++ FC+ + + +L + ++ G P++VTL L N ++
Sbjct: 98 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 157
Query: 97 D----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D + + P T+TFN +I L K +A+ L+ M G P Y T++ L
Sbjct: 158 DQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 214
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A K+++ M + G P++ T+T L A ++ + L+PDV
Sbjct: 378 CKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDV 437
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
TY +++DG C+ G + EL ++ R + PN +T LI H
Sbjct: 438 VTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDE 497
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G++P T+N++I+ C G + K L M + P ++TLI
Sbjct: 498 MVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLI 549
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D A ++D M + G P + TY + +A E+ + + PDV ++
Sbjct: 207 DVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFN 266
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDI 98
++ GFC+VG E ++ E R VTP+VV+ +L + +
Sbjct: 267 ILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGL 326
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G +P + + VI C G + +AL + M G +P Y+TL+ L +Q
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQ 380
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIH-------LHNV 95
G PDV TY +++G CK R + +LLNE ERGVTP++ TLIH N
Sbjct: 362 GCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENA 421
Query: 96 IDIGHI-------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + P +T+N++I +C G + KA L M+ +P+ Y LI
Sbjct: 422 LQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILI 479
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA K M P+V +++ L A L +K GL PD
Sbjct: 272 FCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPD 331
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDI----- 98
YT V+ GFC+ G +E + + +E + G P+VVT L H ++D
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLN 391
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P TF +I C G + AL L + P Y++LI
Sbjct: 392 EMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLI 444
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + A V + M P+ TY ++ +A + + + G++PD
Sbjct: 552 YIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPD 611
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
YTY ++++G G S + +L +E I RG P+
Sbjct: 612 RYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C K +A +D M G PN+ TY +I++ Y + L ++ D + PD
Sbjct: 482 HCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPD 541
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ T+ ++ G+ K + + N + V P+ V T+N +
Sbjct: 542 LITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAV------------------TYNMI 583
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G + A + M + G P R Y +LI
Sbjct: 584 INGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLI 619
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EAY ++++ ++ + YT ++ +CK + +++E +R V P+VVT H
Sbjct: 143 EAYRLVLSSDSE---VNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVT----H 195
Query: 94 NVI---------------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
NV+ + G P +T+N+V++ LC + DKA + M +
Sbjct: 196 NVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQ 255
Query: 133 HGKIPSRTLYDTLI 146
P ++ LI
Sbjct: 256 CSVAPDVRSFNILI 269
Score = 35.4 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + ++ + M + P++ T+ L A+ + ++ + ++PD
Sbjct: 517 YCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPD 576
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
TY +++GF + G + + + G+ P+ T + L N GH+
Sbjct: 577 AVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLIN----GHV 623
>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 418
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+ V D + G P+V ++ L E + + ++ G++PDVYTY+ +++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIP 102
G CK + + EL E ++ G+ PN VT L ++ P
Sbjct: 215 GLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSP 274
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H V I A + + GL+P V ++ +M+G+ K+G +E L N
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N ++D G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ A+ + M P Y+TLI
Sbjct: 257 VXLAMEIYKQMLSQSLSPDLITYNTLI 283
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A ++ + M DNG PN T+T L A E+ + + L PD+
Sbjct: 217 CKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDL 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY ++ G CK G + +L++E +G+ P+ +T
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 32/167 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A ++ M P++ TY L +A +++ + GLKPD
Sbjct: 251 HCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 51 VYTYTAVMDGFCKVG--------RSNEVME-----------LLNEAIERGVTPNVVTLIH 91
TYT ++DG CK G R + E L++ + G + + +
Sbjct: 311 KITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM-- 368
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
L ++ +G P T+ +I C G + LL M G +PS
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPS 415
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 46/132 (34%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------------------------- 33
C K D +A+ +ID M G P+ TYT L
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDD 346
Query: 34 -----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+A +ML + + GLKP++ TYT +++ FCK G +LL E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406
Query: 77 AIERGVTPNVVT 88
G P+VVT
Sbjct: 407 MQRDGYVPSVVT 418
>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
Length = 559
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
Y N N A ++ + M + G PN YT L +A + ++ DG++
Sbjct: 184 AYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVE 243
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P+ TY +++D +VG LL E + G+ P++ ITF+
Sbjct: 244 PNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDL------------------ITFS 285
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+I+ C +DK+ LL +MYE G +P LY++L++
Sbjct: 286 TIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLE 324
>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C N +A+K++ M +NG N +YT L EA + +++ G +P V
Sbjct: 354 CRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSV 413
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNV---IDI------- 98
TY ++DG+ K G E E ++G+ P+V T L+H H V +D+
Sbjct: 414 VTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEE 473
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P + + +I L G+ ++A M G P TLY L+ L
Sbjct: 474 MKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSL 528
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 69/169 (40%), Gaps = 29/169 (17%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
KND A +V+ M G P V TYTIL + + +K + DVY
Sbjct: 182 KNDARVA-EVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYF 240
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIP---------- 102
Y+AV++ +C+ G E+ +E + G+ PN T L N IG I
Sbjct: 241 YSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQ 300
Query: 103 ------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
I FN +I C G +DKAL + +M G Y+TL
Sbjct: 301 LRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTL 349
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLM-NVKNDGLKPD 50
YC + A +V D NG PN TY L EA EML+ +++ G+ +
Sbjct: 248 YCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHN 307
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ ++DG+C+ G ++ +E + +ER G+ +V T+N
Sbjct: 308 QIIFNTMIDGYCRHGMVDKALE-IKAVMERMGIQLDVY------------------TYNT 348
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ LC V +++ A LL +M E+G + Y TLI
Sbjct: 349 LACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLI 385
>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
Length = 534
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 34/169 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAV 57
AR ++ M G+ P TY +L +A + N+ KPDV +Y +
Sbjct: 147 ARSLLADMRAAGFAPTAATYNVLLKAQCSDAAADIKDALRLFRNIP----KPDVCSYNTI 202
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI-------GH 100
+DG C+ GR +E+ +E + + + P VV TLIH + + I G
Sbjct: 203 IDGLCRRGRLAAALEMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGV 262
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T++++I LC G+ AL L+ M + K+P+ Y ++I L
Sbjct: 263 SPNLVTYSSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGL 311
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A ++ M P V TYT L +A ++ + G+ P++
Sbjct: 207 CRRGRLAAALEMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNL 266
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY++++DG CK GR+ +EL++ I+ PN TIT+++VI
Sbjct: 267 VTYSSLIDGLCKGGRAASALELMDRMIKEKKLPN------------------TITYSSVI 308
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC + +A+ +L M G+ P L+ LI L
Sbjct: 309 DGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGL 346
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C A +++D M PN TY+ + EA E+L ++ G KPD
Sbjct: 277 CKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDA 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ ++ G C GR+ E L+E I G+ PN VT LH I+ N V+
Sbjct: 337 GLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPNRVTW-SLHTRIN----------NTVL 385
Query: 112 QALCGVGKIDKAL 124
ALC G++ +A
Sbjct: 386 TALCAKGELGRAF 398
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDG-LKPDV 51
C EA + M G PN+ TY L + LMN D + PDV
Sbjct: 221 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 280
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIG------ 99
+T V+D CK G E ++++ I RGV PNVVT L N +D+
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340
Query: 100 -----HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ I++N +I C + +DKA+ L M P+ Y+TLI L
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 395
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK-----------PDV 51
C + EA V+D M G PNV TY L L N + +K +V
Sbjct: 291 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 350
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y +++G+CK+ ++ M L E + +TPN T+T+N +I
Sbjct: 351 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPN------------------TVTYNTLI 392
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTLIK 147
LC VG++ A+ L M G+IP RTL D L K
Sbjct: 393 HGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 65/209 (31%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ N+ DF A + + G+ P+ TT+T L EA + + +G +P
Sbjct: 116 CHLNRVDF--AFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQP 173
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELL----------------------------------- 74
+V TY +++G CKVG ++ + LL
Sbjct: 174 NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIF 233
Query: 75 NEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGV 117
+E I +G++PN+VT LIH ++ ++D +P T N V+ ALC
Sbjct: 234 SEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKE 293
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + +A ++ +M G P+ Y+ L+
Sbjct: 294 GMVAEAHDVVDMMIHRGVEPNVVTYNALM 322
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +++ M PNV ++ L EA+ + + G+ P++
Sbjct: 186 CKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNI 245
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------------IHLHNVIDI 98
TY +++ G CK+ V L+NE ++ + P+V TL H+V+D+
Sbjct: 246 VTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 305
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N ++ C ++D A+ + M + + Y+TLI
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 357
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+ L + G +PD T+T ++ G C G+ E + L ++ I G PNVV
Sbjct: 124 AFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVV------- 176
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL--DQQ 152
T+ +I LC VG A+ LL M + P+ ++ TLI L D+Q
Sbjct: 177 -----------TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ 225
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 25/166 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR + + G PNV TY I+ EA ++ + +G P+
Sbjct: 466 CRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 525
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY + GF + + +ELL E + RG + +V T L +G + +V
Sbjct: 526 CTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLL-----VGMLSDDGLDQSVK 580
Query: 112 QALCGV-----GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
Q LC + + + LL F M + PS L T ++L +
Sbjct: 581 QILCKIVILYERNLGETLLFQFWM----EAPSEKLMVTECEELSMK 622
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ + + + P++ YT + +A ++ N+ + GL+P+V
Sbjct: 431 CKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV 490
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+TY ++ G CK G E +L +E + G +PN T
Sbjct: 491 WTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 527
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ A + + M G V TY +L +AY +L ++ +GL PD
Sbjct: 229 YCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPD 288
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V+TY +++G+CK G + +E+ E +GV VT L
Sbjct: 289 VFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFK 348
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P + +N +I + C G +++A ++ M + P Y+TLI+
Sbjct: 349 VAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIR 402
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 40/165 (24%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K E ++ G P+V Y L A+E++ ++ + PD
Sbjct: 334 FSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPD 393
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ GFC +GR +E L++E +RG+ P D+G
Sbjct: 394 DVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQP------------DLG----------- 430
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL---DQQ 152
LC G+ D A L+ M G P + Y +LI+ L D+Q
Sbjct: 431 ---LCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGLTTVDEQ 472
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 29/137 (21%)
Query: 25 PNVTTYT-----------ILEAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PN TY + A E++ ++ G+ PD YTY ++ G+CK+GR + +
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAK 204
Query: 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132
+ +E + +G P + +N +I C GK+D AL M +
Sbjct: 205 VFDEMLTQGEVA-----------------PSAVMYNALIGGYCDRGKLDVALQYREDMVQ 247
Query: 133 HGKIPSRTLYDTLIKKL 149
G + Y+ L+ L
Sbjct: 248 RGVAMTVATYNLLVHAL 264
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
+P+ TY V+ GFC GR +E++ E ERG G P T+
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERG-----------------GIAPDKYTY 186
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLI 146
+I C +G+++ A + M G++ PS +Y+ LI
Sbjct: 187 ATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALI 226
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C EA +V D M G P+V TY +L+A E+L +K G+ PD
Sbjct: 342 FCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPD 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID 97
+ T+T ++ G+C+ G + ++L + + + + P+VV L + + D
Sbjct: 402 LCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWD 461
Query: 98 IGH----IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
H P +T++ +I + C G++++A L M G +P+ Y+++IK
Sbjct: 462 DMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIK 515
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 28/174 (16%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D A ++D M + G P + T+ + +A E+ + + PDV ++
Sbjct: 207 DVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFN 266
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDI 98
++ GFC+VG E M+ E +RGVTP+VV+ +L + +
Sbjct: 267 ILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGL 326
Query: 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G +P + + VI C G + +AL + M G +P Y+TL+ L +Q
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQ 380
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A ++ D M PN TY+IL EA+ L + + G P++
Sbjct: 448 CRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNI 507
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDIGHI 101
TY +++ G+C+ G + + L + ++ + P+++ TLIH +H ++ +I
Sbjct: 508 MTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNI 567
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N +I G +++A + M G P R Y +LI
Sbjct: 568 MEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLI 619
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + + A V + M P+ TY ++ EA + + G++PD
Sbjct: 552 YIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPD 611
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
YTY ++++G G S E +L +E + RG P+
Sbjct: 612 RYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + ++ + M + P++ T+ L A+ + ++ + ++PD
Sbjct: 517 YCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPD 576
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
TY +++GF + G E + + G+ P+ T + L N GH+
Sbjct: 577 AVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLIN----GHV 623
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDG-LKPDV 51
C EA + M G PN+ TY L + LMN D + PDV
Sbjct: 221 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 280
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIG------ 99
+T V+D CK G E ++++ I RGV PNVVT L N +D+
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340
Query: 100 -----HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ I++N +I C + +DKA+ L M P+ Y+TLI L
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 395
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK-----------PDV 51
C + EA V+D M G PNV TY L L N + +K +V
Sbjct: 291 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 350
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y +++G+CK+ ++ M L E + +TPN T+T+N +I
Sbjct: 351 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPN------------------TVTYNTLI 392
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS----RTLYDTLIK 147
LC VG++ A+ L M G+IP RTL D L K
Sbjct: 393 HGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 65/209 (31%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+ N+ DF A + + G+ P+ TT+T L EA + + +G +P
Sbjct: 116 CHLNRVDF--AFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQP 173
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELL----------------------------------- 74
+V TY +++G CKVG ++ + LL
Sbjct: 174 NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIF 233
Query: 75 NEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGV 117
+E I +G++PN+VT LIH ++ ++D +P T N V+ ALC
Sbjct: 234 SEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKE 293
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G + +A ++ +M G P+ Y+ L+
Sbjct: 294 GMVAEAHDVVDMMIHRGVEPNVVTYNALM 322
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +++ M PNV ++ L EA+ + + G+ P++
Sbjct: 186 CKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNI 245
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------------IHLHNVIDI 98
TY +++ G CK+ V L+NE ++ + P+V TL H+V+D+
Sbjct: 246 VTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 305
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N ++ C ++D A+ + M + + Y+TLI
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 357
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+ L + G +PD T+T ++ G C G+ E + L ++ I G PNVV
Sbjct: 124 AFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVV------- 176
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL--DQQ 152
T+ +I LC VG A+ LL M + P+ ++ TLI L D+Q
Sbjct: 177 -----------TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ 225
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDV 51
C+ +A + M G P++ TY L Y +L ++ PD+
Sbjct: 396 CHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDI 455
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YT ++DG C+ G + +L + +G+ PNV T+N +I
Sbjct: 456 QIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV------------------WTYNIMI 497
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
LC G + +A L M ++G P+ Y+ + +
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITR 533
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR + + G PNV TY I+ EA ++ + +G P+
Sbjct: 466 CRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 525
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY + GF + + +ELL E + RG + +V T
Sbjct: 526 CTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 562
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
C+ N FF VID + +G ++ +M + N G+ P+V Y+++++G C
Sbjct: 75 CSGN-FFTYGLVIDSLCKDGLA--------IKGLKMFREMINMGICPNVIVYSSLINGLC 125
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTI 105
+VG+ E + L +E + +G+ NV+T LIH ++ G +P +
Sbjct: 126 RVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVV 185
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +I L GK+ +A + LM + G+ P+ Y++L+ L
Sbjct: 186 TFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGL 229
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + D M G NV TY L EA + +G+ PDV
Sbjct: 125 CRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDV 184
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH----------- 100
T+T ++D K G+ E ++ I++G PN+VT L N + + H
Sbjct: 185 VTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEV 244
Query: 101 -IPR-----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ R I++N +I C GK ++A+ L M PS T Y L+K L Q
Sbjct: 245 MVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQ 301
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA + M P++TTYTIL A E+ N++ G P
Sbjct: 264 YCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPS 323
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-----------------VTLIHLH 93
+ TYT ++DG CK G E +++ P++ +
Sbjct: 324 LDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFD 383
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ +G +P +T+N +I LC GK+ +A L M E G ++ +I+ Q+
Sbjct: 384 EIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQE 442
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ D M +G+ ++ Y L A E+ + ++ +
Sbjct: 20 CFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNF 79
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
+TY V+D CK G + + +++ E I G+ PNV+ L N
Sbjct: 80 FTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDE 139
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G IT+N++I A C G +A M G +P + TLI L ++
Sbjct: 140 MVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKK 197
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 9 FEARKVIDYM--FDN----GYHPNVTTYTI-----------LEAYEMLMNVKNDGLKPDV 51
F+AR+ M FD G PN+ TY I LEA + + ++ G + D
Sbjct: 370 FQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDE 429
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV 95
++ ++ GF + + + ME L E+ +PN + L N+
Sbjct: 430 ISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNL 473
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 64/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F + + M D G N + IL EA + ++ G++PD
Sbjct: 414 YATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPD 473
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---------------- 91
V TY+ ++ FC++GR + ME ++ I G+ PN V +LIH
Sbjct: 474 VVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVS 533
Query: 92 ------------------LHN----------------VIDIGHIPRTITFNNVIQALCGV 117
+H+ VI IG P +TFN++I C V
Sbjct: 534 EMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLV 593
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK++KA +L M G P Y+TL+
Sbjct: 594 GKMEKAFGVLDAMVSVGIEPDVVTYNTLV 622
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 32/160 (20%)
Query: 1 CYCNKNDFFEARKVIDY-MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-- 46
C C+ EA V+ + M D G PN +Y + EA +M+ + +G
Sbjct: 200 CLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGR 259
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
PDV ++ V+ GF K G ++ L+NE +++GV P+VV T
Sbjct: 260 CSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVV------------------T 301
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N+++ ALC +DKA L+L M + G P Y +I
Sbjct: 302 YNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAII 341
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A V+ M D G P+ TYT + E+ +M + + GL P +
Sbjct: 310 CKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGI 369
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
T+ + M CK GRS + E+ +G P++V+ L+H H+
Sbjct: 370 VTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHS 429
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ D G + FN +I A G +D+A+L+ M G P Y TLI
Sbjct: 430 MADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLI 481
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGY-HPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
+C D +A++++ M G PN+ ++ +++A+++ V + G +P
Sbjct: 519 FCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRP 578
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+ T+ +++DG+C VG+ + +L+ + G+ P+VV T+N
Sbjct: 579 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVV------------------TYNT 620
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ C GKID L+L M P+ Y ++ L
Sbjct: 621 LVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGL 660
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 32/178 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-----------KPD 50
YC +A V+D M G P+V TY L + +DGL KP
Sbjct: 590 YCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPT 649
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG-------------------VTPNVVTLIH 91
TY+ V+DG GR++ ++ +E I+ G +T +TL H
Sbjct: 650 TVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFH 709
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+D N VI AL V + ++A L + G +P+ + Y +I L
Sbjct: 710 KLGAMDCKF--DITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNL 765
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 21/140 (15%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL---EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
EAR + + M G P V +YT L EA + + N G++P+V T+ ++D CK G+
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 319
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
E +LL I+RG+ PN+ +T+N++I+ C VG ++ A L
Sbjct: 320 VIEAKDLLEVMIQRGIVPNL------------------LTYNSLIEGFCLVGDLNSAREL 361
Query: 127 LFLMYEHGKIPSRTLYDTLI 146
M G P Y LI
Sbjct: 362 FVSMPSKGCEPDVICYTVLI 381
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 61/208 (29%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN N E V+ + GY P++ TYT L +A + ++ G P
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP 199
Query: 50 DVYTYTAVMDGFCKVG-----------------------------------------RSN 68
+ TY +M G C+ G R +
Sbjct: 200 NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRED 259
Query: 69 EVMELLNEAIERGVTPNVVTLIHL---------HNVIDIGHIPRTITFNNVIQALCGVGK 119
E +L E +G+TP V++ L + +++ G P +TFN +I LC GK
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 319
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +A LL +M + G +P+ Y++LI+
Sbjct: 320 VIEAKDLLEVMIQRGIVPNLLTYNSLIE 347
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+++ + M + G PNV T+ +L EA ++L + G+ P++ TY +++
Sbjct: 287 EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 346
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+GFC VG N EL +G P+V I + +I C
Sbjct: 347 EGFCLVGDLNSARELFVSMPSKGCEPDV------------------ICYTVLINGYCKTS 388
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
K+++A+ L M + GK P Y L+ L Q
Sbjct: 389 KVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 421
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+ +++ M G PN+ TY L A E+ +++ + G +PDV
Sbjct: 315 CKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDV 374
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
YT +++G+CK + E M+L N ++ G P+V T
Sbjct: 375 ICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKT 411
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA K+ + M G P+V TY L +A ++ +K G+ D
Sbjct: 384 YCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGD 443
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
+Y Y ++G CK G E MEL N+ + ++ + + G +
Sbjct: 444 LYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFE 503
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P +T+N +I C G++ KA +L M ++G P + Y TLI+
Sbjct: 504 KLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 557
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
T ++A++ + P + ++T ++ G K+ ++V L N+ G++P+ TL
Sbjct: 76 TAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLN 135
Query: 91 HLHN-----------------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L N ++ G+IP +T+ +I+ LC +I KA LL M +
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195
Query: 134 GKIPSRTLYDTLIKKL 149
G P+ Y TL+K L
Sbjct: 196 GCTPNAITYGTLMKGL 211
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A ++ + + P+V TY I+ +A + ++ +G PD
Sbjct: 490 CKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDK 549
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
TY ++ GF + + +V+ELL+ ++R V+ +V L H
Sbjct: 550 ITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNILRH 589
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M G+ PNV TYT + +A + ++GL PD+ T+T+++ G C +G
Sbjct: 321 MRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGE 380
Query: 67 SNEVMELLNEAIERGVTPNVVTL-------------IHLHN----VIDIGHIPRTITFNN 109
+V +L E I RG+ PN + L + H+ +I +G P +++
Sbjct: 381 WKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTI 440
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I C GK+D+++ LL M G P Y L+
Sbjct: 441 LIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALL 477
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 25/161 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
C +A V+ MFD G + EA +L + GL+PDV TY+ ++D +C
Sbjct: 185 CKAQAMDKAEAVLQQMFDKG--------QLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYC 236
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI---GHIP-RTI 105
K+GR E + + + RG P+ T L+ +H+++ + IP
Sbjct: 237 KIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDH 296
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
FN +I+A +DKA+ M + G P+ Y T+I
Sbjct: 297 VFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVI 337
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 1 CYCN--------KNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEML 39
C+CN + + +R + M D+GY+ PNV +Y ++ +AY +
Sbjct: 103 CFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLF 162
Query: 40 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG 99
+ G P++ TY +V+DG CK ++ +L + ++G V L L + G
Sbjct: 163 HEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRL--LKKMSGGG 220
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I C +G+ +A + M G+ P Y TL+
Sbjct: 221 LQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLL 267
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNV-----------TTYTILEAYEMLMNVKNDGLKPDV 51
C ++ + K+ M + G HPN +LEA++ + + G+KPDV
Sbjct: 376 CTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDV 435
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+YT ++DG+C G+ +E ++LL ++ IG P +T++ ++
Sbjct: 436 VSYTILIDGYCLDGKMDESIKLLGR------------------MVSIGLRPDNVTYSALL 477
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G++D AL L M+ P+ Y+ ++ L
Sbjct: 478 NGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGL 515
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
D++F+ T+ +A + ++ G P+V TYT V+D CK GR + + +
Sbjct: 295 DHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFS 354
Query: 76 EAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
+ + G++P++ ITF ++I LC +G+ K L F M G
Sbjct: 355 QMVSEGLSPDI------------------ITFTSLIHGLCTIGEWKKVEKLSFEMINRGI 396
Query: 136 IPSRTLYDTLIKKL 149
P+ +T++ L
Sbjct: 397 HPNAIFLNTIMDSL 410
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 63/209 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA D + G P+V +YTIL E+ ++L + + GL+PD
Sbjct: 411 CKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDN 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVV--TLIHLHNVIDIGHIPRT 104
TY+A+++G+CK GR ++ + L E + +T N++ L H V+
Sbjct: 471 VTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMK 530
Query: 105 I---------------------------------------------TFNNVIQALCGVGK 119
I TFN +I L VG+
Sbjct: 531 IVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGR 590
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
I A L + G +P +Y +I+
Sbjct: 591 IGDAKSLFSAILPSGLVPDAIIYGLMIQS 619
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G PNV +YTI EAY +L ++N+G KPDV T+T ++ C GR
Sbjct: 256 MEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGR 315
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-------GHIPRTITFNN 109
++ ++ + + P+ VT I L +V++I G+ + +
Sbjct: 316 ISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTA 375
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VI ALC VG++ +AL + M + G +P + Y++LI
Sbjct: 376 VIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 412
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + F EA K+ M +N P+V L EA+ + +K L+P
Sbjct: 519 CCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEP 578
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY ++ G + G+ EVM LL E PN+ IT+N
Sbjct: 579 TDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNL------------------ITYNT 620
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ LC G ++ AL +L+ M G IP + Y+T+I L ++
Sbjct: 621 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 663
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 29/146 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C+ +A+ V M + P+ TY T+L+ + E+ +K DG +V
Sbjct: 311 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 370
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTAV+D C+VGR E +E+ +E ++G+ +P ++N++I
Sbjct: 371 VAYTAVIDALCQVGRVFEALEMFDEMKQKGI------------------VPEQYSYNSLI 412
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIP 137
+ AL L M HG P
Sbjct: 413 SGFLKADRFGDALELFKHMDIHGPKP 438
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+ + D ++ + M +GY+ NV YT + EA EM +K G+ P+
Sbjct: 345 FGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPE 404
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLN----------------------------EAIER-- 80
Y+Y +++ GF K R + +EL +AI+R
Sbjct: 405 QYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYE 464
Query: 81 -----GVTPNVVT----LIHL-------------HNVIDIGHIPRTITFNNVIQALCGVG 118
G+ P+VV L L H + +G P TIT+ +I+
Sbjct: 465 LMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKAS 524
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K D+A+ + + M E+ +P ++LI L
Sbjct: 525 KFDEAVKIFYDMIENNCVPDVLAVNSLIDTL 555
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 18 MFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
+F N Y + + ++ YE++ K+ G+ PDV AV+ G K GR + +E
Sbjct: 445 LFINYYGKSGESIKAIQRYELM---KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL 501
Query: 78 IERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKI 120
GV+P+ +T + +++I+ +P + N++I L G+
Sbjct: 502 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRG 561
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+A + + + E P+ Y+TL+ L ++
Sbjct: 562 DEAWRIFYQLKEMNLEPTDGTYNTLLAGLGRE 593
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E KV + M GY TY + +A ++ N+ + G P TY ++
Sbjct: 843 EMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 902
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH 100
DG K GR + L NE +E G N ++N++ GH
Sbjct: 903 DGLLKAGRIEDAENLFNEMLEYGCKANCT----IYNILLNGH 940
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG----------VTP 84
A + +K G PD +TY ++D K R E++++ E +G +
Sbjct: 809 AEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIIS 868
Query: 85 NVVTLIHLHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+V L ID+ G P T+ ++ L G+I+ A L M E+G
Sbjct: 869 GLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKA 928
Query: 138 SRTLYDTLI 146
+ T+Y+ L+
Sbjct: 929 NCTIYNILL 937
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTYTAVM 58
E +++ M+ + Y PN+ TY TIL+ A +ML ++ G PD+ +Y V+
Sbjct: 598 EVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 657
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIG 99
G K R NE + + +++ + P+ TL L + + IG
Sbjct: 658 YGLVKEERYNEAFSIFCQ-MKKVLIPDYATLCTILPSFVKIG 698
>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V M G PNV TYTIL EA+ + + GL+P V TY++++D
Sbjct: 267 AFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLID 326
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------IHLH----NVIDIGHI--P 102
GFCK G L + I+ G P+VV + LH +V +G P
Sbjct: 327 GFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRP 386
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ FN++I C + + D+AL + LM +G P TL++
Sbjct: 387 NVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMR 431
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + + + M GY P+V Y +L A + ++P+
Sbjct: 328 FCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPN 387
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V + +++DG+C++ R +E +++ G+ P+V T+ L V V
Sbjct: 388 VVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRV-------------TV 434
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G++ + L L F M++ G P + TL+
Sbjct: 435 ME-----GRLKEGLFLFFRMFKMGLEPDAVAFCTLM 465
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 23/148 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDG----LKPDVYTYTAV 57
YC+ EA ++ + + + PN T TIL + + N DG + P + +Y+ +
Sbjct: 538 YCSLRRLDEAARIFEMLKFTPFGPNAVTLTIL-IHTLCKNSDMDGALRIISPSIISYSII 596
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+DG CK GR +E + ++AI+ + P+VV + +I+ C V
Sbjct: 597 IDGLCKRGRVDEATNIFHQAIDAKILPDVV------------------AYAILIRGCCKV 638
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTL 145
G++ +A LL M +G P L L
Sbjct: 639 GRLVEAALLYEHMLRNGVKPDDLLQRAL 666
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH 91
A ML V + G P+V T+ +++GFCK G + EL +RG+ P+++ TLI
Sbjct: 162 ASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLID 221
Query: 92 LH---NVIDIGHIPRT-----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+ ++ +GH + + F++ I G + A + M G P
Sbjct: 222 GYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISP 281
Query: 138 SRTLYDTLIKKLDQ 151
+ Y LIK L Q
Sbjct: 282 NVVTYTILIKGLCQ 295
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 30/151 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N EA KV M G P+V T T L E + + GL+PD
Sbjct: 398 WCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPD 457
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLI-----------HL 92
+ +MD FCK + ++L + ++R P V+ L+
Sbjct: 458 AVAFCTLMDAFCKNMKPTIGLQLF-DLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFF 516
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123
+N+++ P +T+N +I C + ++D+A
Sbjct: 517 NNLLEGKMEPDIVTYNTMICGYCSLRRLDEA 547
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 31/159 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA K+ M NG P+ +Y+I A+++L ++ L P+V
Sbjct: 265 CKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNV 324
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY ++ CK + +E +LL+E IERGV+P++ + N I
Sbjct: 325 FTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSY-------------------NAI 365
Query: 112 QAL-CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
QA C +++KAL L+ M + +P R Y+ ++K L
Sbjct: 366 QAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKML 404
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P+ TY+ +M G+ VG S+E +L E ERG +VV +N
Sbjct: 217 PNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVV------------------AYN 258
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++++ALC G +D+A L M +G P Y I+
Sbjct: 259 SLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIR 297
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYE-----------MLMNVKNDGLKPDV 51
C EA +++D M + G P++ +Y ++A+ ++ ++ + PD
Sbjct: 335 CKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDR 394
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+TY V+ +VGR + V ++ ERG P T
Sbjct: 395 HTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAAST 431
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 31/159 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA K+ M NG P+ +Y+I A+++L ++ L P+V
Sbjct: 238 CKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNV 297
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY ++ CK + +E +LL+E IERGV+P++ + N I
Sbjct: 298 FTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSY-------------------NAI 338
Query: 112 QAL-CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
QA C +++KAL L+ M + +P R Y+ ++K L
Sbjct: 339 QAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKML 377
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P+ TY+ +M G+ VG S+E +L E ERG +VV +N
Sbjct: 190 PNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVV------------------AYN 231
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++++ALC G +D+A L M +G P Y I+
Sbjct: 232 SLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIR 270
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYE-----------MLMNVKNDGLKPDV 51
C EA +++D M + G P++ +Y ++A+ ++ ++ + PD
Sbjct: 308 CKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDR 367
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+TY V+ +VGR + V ++ ERG P T
Sbjct: 368 HTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAAST 404
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A K+ D M D G PNV YT+L EA ++L ++K+ G PD
Sbjct: 218 CKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDE 277
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLI--------------HLHN 94
TY A + G CKVGR NE + L + G + LI +
Sbjct: 278 VTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKT 337
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ P + + +I+ G+I+ AL L +M + G +P Y+T++K L
Sbjct: 338 MLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVL 392
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
++ D F++R ++++ V + IL A + + G P+ TY +MDG CK
Sbjct: 161 SRMDEFQSRPTA-FVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCK 219
Query: 64 VGRSNEVMELLNEAIERGVTPNV----VTLIHLHN-------------VIDIGHIPRTIT 106
G + + +++ +E ++RG+ PNV V L L N + D G +P +T
Sbjct: 220 QGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVT 279
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+N + LC VG++++A L ++ + G Y LI L Q
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQ 324
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 43/189 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A + M N + TT TI+ EA ++ + G P V
Sbjct: 393 CDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTV 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIH--- 91
TY A++DGF + GR E L ++ +E G P++ L+H
Sbjct: 453 MTYNALIDGFYREGRLEEARMLFHK-MEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMC 511
Query: 92 -----------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
L ++ID G +P +T+N +I LC +D A+ L + G P
Sbjct: 512 QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEI 571
Query: 141 LYDTLIKKL 149
Y TLI L
Sbjct: 572 TYGTLIDGL 580
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + +L+AY++L ++ + G+ PDV TY +++G CK + + L E +G++
Sbjct: 508 HDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGIS 567
Query: 84 PNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
P+ +T ++ N++ G P +N+++++LC + K+ +A+ L
Sbjct: 568 PDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINL 627
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 41/181 (22%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTYTAVM 58
+A +D M G+ P+ Y T+L+ A+ + + + L D T T ++
Sbjct: 365 DALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI 424
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------LHNVIDIGHIP 102
G CK G +E M++ +E E G P V+T LI L + +++G+ P
Sbjct: 425 CGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNP 484
Query: 103 R-----TITFNNV---------IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
T+ N V + +C G++ KA LL + + G +P Y+TLI
Sbjct: 485 SLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLING 544
Query: 149 L 149
L
Sbjct: 545 L 545
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A K+ D M D G PNV YT+L EA ++L ++K+ G PD
Sbjct: 218 CKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDE 277
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLI--------------HLHN 94
TY A + G CKVGR NE + L + G + LI +
Sbjct: 278 VTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKT 337
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ P + + +I+ G+I+ AL L +M + G +P Y+T++K L
Sbjct: 338 MLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVL 392
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
++ D F++R ++++ V + IL A + + G P+ TY +MDG CK
Sbjct: 161 SRMDEFQSRPTA-FVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCK 219
Query: 64 VGRSNEVMELLNEAIERGVTPNV----VTLIHLHN-------------VIDIGHIPRTIT 106
G + + +++ +E ++RG+ PNV V L L N + D G +P +T
Sbjct: 220 QGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVT 279
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+N + LC VG++++A L ++ + G Y LI L Q
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQ 324
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 43/189 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A + M N + TT TI+ EA ++ + G P V
Sbjct: 393 CDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTV 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIH--- 91
TY A++DGF + GR E L ++ +E G P++ L+H
Sbjct: 453 MTYNALIDGFYREGRLEEARMLFHK-MEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMC 511
Query: 92 -----------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
L ++ID G +P +T+N +I LC +D A+ L + G P
Sbjct: 512 QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEI 571
Query: 141 LYDTLIKKL 149
Y TLI L
Sbjct: 572 TYGTLIDGL 580
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + +L+AY++L ++ + G+ PDV TY +++G CK + + L E +G++
Sbjct: 508 HDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGIS 567
Query: 84 PNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
P+ +T ++ N++ G P +N+++++LC + K+ +A+ L
Sbjct: 568 PDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINL 627
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 41/181 (22%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTYTAVM 58
+A +D M G+ P+ Y T+L+ A+ + + + L D T T ++
Sbjct: 365 DALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI 424
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------LHNVIDIGHIP 102
G CK G +E M++ +E E G P V+T LI L + +++G+ P
Sbjct: 425 CGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNP 484
Query: 103 R-----TITFNNV---------IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
T+ N V + +C G++ KA LL + + G +P Y+TLI
Sbjct: 485 SLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLING 544
Query: 149 L 149
L
Sbjct: 545 L 545
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A K+ D M D G PNV YT+L EA ++L ++K+ G PD
Sbjct: 218 CKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDE 277
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLI--------------HLHN 94
TY A + G CKVGR NE + L + G + LI +
Sbjct: 278 VTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKT 337
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ P + + +I+ G+I+ AL L +M + G +P Y+T++K L
Sbjct: 338 MLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVL 392
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
++ D F++R ++++ V + IL A + + G P+ TY +MDG CK
Sbjct: 161 SRMDEFQSRPTA-FVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCK 219
Query: 64 VGRSNEVMELLNEAIERGVTPNV----VTLIHLHN-------------VIDIGHIPRTIT 106
G + + +++ +E ++RG+ PNV V L L N + D G +P +T
Sbjct: 220 QGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVT 279
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+N + LC VG++++A L ++ + G Y LI L Q
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQ 324
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 43/189 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A + M N + TT TI+ EA ++ + G P V
Sbjct: 393 CDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTV 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIH--- 91
TY A++DGF + GR E L ++ +E G P++ L+H
Sbjct: 453 MTYNALIDGFYREGRLEEARMLFHK-MEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMC 511
Query: 92 -----------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140
L ++ID G +P +T+N +I LC +D A+ L + G P
Sbjct: 512 QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEI 571
Query: 141 LYDTLIKKL 149
Y TLI L
Sbjct: 572 TYGTLIDGL 580
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + +L+AY++L ++ + G+ PDV TY +++G CK + + L E +G++
Sbjct: 508 HDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGIS 567
Query: 84 PNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
P+ +T ++ N++ G P +N+++++LC + K+ +A+ L
Sbjct: 568 PDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINL 627
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 41/181 (22%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTYTAVM 58
+A +D M G+ P+ Y T+L+ A+ + + + L D T T ++
Sbjct: 365 DALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI 424
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------LHNVIDIGHIP 102
G CK G +E M++ +E E G P V+T LI L + +++G+ P
Sbjct: 425 CGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNP 484
Query: 103 R-----TITFNNV---------IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
T+ N V + +C G++ KA LL + + G +P Y+TLI
Sbjct: 485 SLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLING 544
Query: 149 L 149
L
Sbjct: 545 L 545
>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g32630-like [Glycine max]
Length = 619
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
YC + + E + + + G PN+ TY T+++AY VK GL PD
Sbjct: 437 YCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPD 496
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+TYT+++ G C V + +E ++L NE + +G+ NV T+ +
Sbjct: 497 VFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVK------------------TYTAI 538
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I L G+ D+AL L M G IP +++ L+ L +
Sbjct: 539 ISGLSKEGRADEALKLYDEMMRMGLIPDDRVFEALVGSLHK 579
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI--- 90
EA+ + ++ G + DV+TY + G CK+ R E +LN +E+GV PNVVT
Sbjct: 375 EAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFI 434
Query: 91 --------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
L N+ G +P +T+N +I A K+ +A L M E G +
Sbjct: 435 EIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLL 494
Query: 137 PSRTLYDTLI 146
P Y +LI
Sbjct: 495 PDVFTYTSLI 504
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + EA ++ D M G+ +V TY IL EA +L + G+ P+
Sbjct: 367 YCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPN 426
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN------------- 94
V T ++ +C+ G E L +RGV PN+V TLI ++
Sbjct: 427 VVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKA 486
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+++ G +P T+ ++I C V K+D+AL L M G + Y +I L ++
Sbjct: 487 EMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKE 545
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 29/145 (20%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+++ M G ++ TYTIL EA ++ + ++ DVY YT+++
Sbjct: 238 EILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWN 297
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
C+ G L +E I RG+ PN T TF +I +C G+++
Sbjct: 298 CRAGNVRRASALFDEMICRGIVPN------------------TXTFGALISGVCKAGQME 339
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLI 146
A +LL M G + +++T++
Sbjct: 340 AAEILLEEMQCKGVDLNVVIFNTMM 364
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 28/164 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+ V D + P+V ++ L E + + ++ G++PDVYTY+ +++
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIP 102
G CK + ++ EL +E I+ G+ PN VT L ++ P
Sbjct: 215 GLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IT+N +I LC G + +A L+ M G P + Y TLI
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D +A+ +ID M G P+ TYT L A+E + + ++ D
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD 346
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTA++ G C+ GRS + ++L E + G+ P +IG T+ +I
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------------EIG------TYTMII 388
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPS 138
C G + LL M G +PS
Sbjct: 389 NEFCKKGDVWTGSKLLKEMQRDGYMPS 415
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y F+ H V I A + + L+P V ++ +M+G+ K+G +E L N
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196
Query: 77 AIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGVGK 119
GV P+V T L N +ID G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + M P Y+TLI
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLI 283
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ +A ++ D M DNG PN T+T L A E+ + + L PD+
Sbjct: 217 CKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
TY ++ G CK G + +L++E +G+ P+ +T L
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDV 51
C +A +V++ M NG PN TY + EA L + +DG++PDV
Sbjct: 238 CKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDV 297
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
T +MD CK R E ++ N + G+ P++ T L+ +H+++D+
Sbjct: 298 VTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDL 357
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P FN +I A K+D+A+L+ M + G P+ Y T+I L
Sbjct: 358 MVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVL 412
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 36/177 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA + M +G P+V T +L EA ++ ++ GLKPD
Sbjct: 272 YCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPD 331
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+ TY ++ G+ G E+ +LL+ + G+ PN H+ N++
Sbjct: 332 ITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNH----HVFNILICAYAKQEKVDEAM 387
Query: 97 -------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P + + VI LC +G++ A+L L M G P +Y LI
Sbjct: 388 LVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLI 444
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 31/146 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKPDVYTYTAVMDG 60
V+ M G PNV + TIL EA E+L + +DG PDV Y V++G
Sbjct: 142 VLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVING 201
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
F K G ++ +E ++G+ P+VVT ++++I ALC +
Sbjct: 202 FFKEGDPDKAYATYHEMFDQGILPDVVT------------------YSSIIAALCKAQAM 243
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLI 146
DKA+ +L M ++G +P+ Y++++
Sbjct: 244 DKAMEVLNTMVKNGVMPNCRTYNSIV 269
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 31/148 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C++N EA +++ M D+G P+V Y + +AY + + G+ P
Sbjct: 166 CDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILP 225
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DV TY++++ CK ++ ME+LN ++ GV PN T+N+
Sbjct: 226 DVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCR------------------TYNS 267
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIP 137
++ C G++ +A+ L +M G P
Sbjct: 268 IVHGYCSSGQLTEAIGFLKMMCSDGVEP 295
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 29/138 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG PN + IL EA + ++ GL P+
Sbjct: 342 YATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPN 401
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
Y V+D CK+GR + + L + I G+TP++ I + +
Sbjct: 402 AVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDI------------------IVYTPL 443
Query: 111 IQALCGVGKIDKALLLLF 128
I C K +KA L+F
Sbjct: 444 IHGFCTCDKWEKAEELIF 461
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------ 89
Y + D + P++YTY+ ++ C+ GR + L I++G +T
Sbjct: 69 YNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKG 128
Query: 90 ------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK-- 135
I L + +G IP + +++ LC + +AL LL +M + G
Sbjct: 129 LCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDC 188
Query: 136 IPSRTLYDTLI 146
P LY+T+I
Sbjct: 189 PPDVVLYNTVI 199
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + + M +G PNV +Y+ L +A + ++++ G P
Sbjct: 212 CFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVP 271
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN--------------- 94
+ +TYT+++D CK+G ++ L NE +E GV NVVT L +
Sbjct: 272 NEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLF 331
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G IP ++N +I +D+AL LL + G P LY T I
Sbjct: 332 GKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFI 385
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKP 49
C + D AR + + M G P+ TY ++++ Y +K+ +P
Sbjct: 142 CMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEP 201
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI------------- 96
DV TY ++++ FCK G+ + +E E + G+ PNVV+ L +
Sbjct: 202 DVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFY 261
Query: 97 ----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+GH+P T+ +++ A C +G + A L M E G + Y LI L
Sbjct: 262 VDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGL 318
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 33 LEAYEMLMN-VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+EA +++MN ++ +G+K + YT +MD + K G E + LL E E VVT
Sbjct: 394 IEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCV 453
Query: 92 LHNVI------------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L + + D G P + +I LC ++ A L M +
Sbjct: 454 LIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQE 513
Query: 134 GKIPSRTLYDTLI 146
G +P RT Y +L+
Sbjct: 514 GLVPDRTAYTSLM 526
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 33/178 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ EA K+ M G PN+ +Y L A E+L +K G++PD+
Sbjct: 319 CDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDL 378
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-------------------L 92
Y + G C + + ++NE E G+ N TLI+ L
Sbjct: 379 LLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKAN--TLIYTTLMDAYFKSGNPTEGLHLL 436
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY-EHGKIPSRTLYDTLIKKL 149
+ ++ H +TF +I LC + KA+ M + G P+ +Y +I L
Sbjct: 437 EEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGL 494
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID----IGHI 101
G KP V+TY ++D K G L E RG+ P+ VT +++ID +G +
Sbjct: 128 GSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVT---YNSMIDGYGKVGRL 184
Query: 102 ----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
P IT+N++I C GK+ K L M + G P+ Y TL
Sbjct: 185 DDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTL 244
Query: 146 I 146
+
Sbjct: 245 V 245
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 13 KVIDYM----FDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
K IDY D G PN YT + A + + +GL PD YT++
Sbjct: 466 KAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSL 525
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
MDG K G E + L ++ E G+ +++ L
Sbjct: 526 MDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSL 560
Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C +N A + + M G P+ T YT +LEA + + G+K D+
Sbjct: 495 CKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDL 554
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
YT+++ GF + + + L E I + P+ V I
Sbjct: 555 LAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCI 593
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 32 ILEAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+ +A + + ND GL+P+ YTA++DG CK + L + + G+ P+
Sbjct: 464 VSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPD 518
>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
Length = 447
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 27/171 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDG--LKPDV 51
+C +F +A +++D M NG PNV +T + + + L++ + G P+V
Sbjct: 40 FCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIGEDCAPNV 99
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
YTY+ ++D CK G+ +E L+ E +++G +PNVVT L+ L
Sbjct: 100 YTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKE 159
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ G IT+ ++ C ID+A LL + + + +L+ L
Sbjct: 160 MSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTAL 210
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M G PN Y T+L EAY++L+++ + G K D +Y ++
Sbjct: 220 EALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILV 279
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
F GR+ + +ELL ++ G+I T T N VI C G
Sbjct: 280 VAFANAGRTYDSLELLGR------------------MLGSGYILDTKTMNVVIHKFCKAG 321
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL--DQQP 153
+ +A L MY+ G IPS Y+TLI QQP
Sbjct: 322 DLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQP 358
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 26/148 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY+ L EAY ++ + G P+V TY A++DGF K+ R +EV+ L
Sbjct: 97 PNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLML 156
Query: 74 LNEAIERGVTPNVVTLIHL------HNVIDIGH-------IPRTITFNNVIQALCGV--G 118
L E +RG +V+T + +N ID + +T+N++ AL
Sbjct: 157 LKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGD 216
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +AL LL M + G P++ Y T++
Sbjct: 217 RTTEALSLLEKMIQEGTRPNQVNYRTVL 244
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNV 95
+Y +M GFCK G + +ELL+E GV PNVV L+H +
Sbjct: 32 SYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRI 91
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---KKLDQ 151
+ P T++ ++ ALC G+ +A L+ M + G P+ Y+ LI +KL++
Sbjct: 92 GE-DCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLER 149
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N +++ +++ M +GY + T ++ EA+++ ++ G P
Sbjct: 282 FANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPS 341
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY ++ FCK + + ++LL++ I+ PNV IT+N++
Sbjct: 342 NVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNV------------------ITYNSI 383
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
I++ C + ++A + +M ++G P R Y TL
Sbjct: 384 IKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTL 418
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + M P++ TY++L EA +M + + G PDV TY+ ++
Sbjct: 274 EAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILI 333
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL---------HNVID--------IGHI 101
+G+CK + M+L E +RGV N VT L NV + G
Sbjct: 334 NGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVP 393
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT+N ++ LC GKI+KAL++L M + G Y+ +I+ +
Sbjct: 394 PNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGM 441
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
+C + ++A + D M + GY PNV Y TI++ A ++L ++ DG++PD
Sbjct: 161 FCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPD 220
Query: 51 -----------------------------------VYTYTAVMDGFCKVGRSNEVMELLN 75
V+T+ A++D K GR +E EL
Sbjct: 221 AVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYE 280
Query: 76 EAIERGVTPNVVT---LIH---LHNVID-----------IGHIPRTITFNNVIQALCGVG 118
E I R + P++VT LI+ +++ +D G P +T++ +I C
Sbjct: 281 EMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSK 340
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
K++ + L M + G + + Y LI+
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTVLIQ 369
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKP 49
C+C + A + M G+ P++ T+ I +A M + G +P
Sbjct: 125 CFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEP 184
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V Y ++DG CK + + ++LLN G+ P+ V T+N+
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAV------------------TYNS 226
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC G+ D A ++ M + P ++ LI
Sbjct: 227 LISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALI 263
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++ +M G PN+ TY +L +A +L +++ G+ D
Sbjct: 371 YCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDAD 430
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ TY ++ G CK G + +L +G+TP++ T
Sbjct: 431 IVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWT 468
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ ++ T +++ FC+ + + + L + ++ G P++VT L N
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDA 170
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G+ P + +N +I LC ++D AL LL M G P Y++LI
Sbjct: 171 LYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISG 230
Query: 149 L 149
L
Sbjct: 231 L 231
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A ++ M +G ++ TY I+ +A+++ ++ GL PD+
Sbjct: 407 CDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDI 466
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+TYTA+M G K G E L + E G+ PN
Sbjct: 467 WTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIH 91
P + ++ ++ K+ + + V+ L + G+ N+ T L
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L ++ +GH P +TF +++ C +I AL + M E G P+ +Y+T+I L
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGL 196
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKPDVYTYTAVM 58
EA+ V+ M P+V TY T++ Y ++ VK G+ PDV+TYT ++
Sbjct: 535 EAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 594
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-----------------DIGHI 101
+GFCK +E + L E ++ + P+ VT L + + D G
Sbjct: 595 NGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQP 654
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IT+N++I LC G +DKA+ L M + G P+ + L+ L
Sbjct: 655 ADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGL 702
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +ID M D G +V TY L +A + +K+ G++P+
Sbjct: 633 CKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNT 692
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+T+T ++DG CK GR + E+ + + +G +V +++NV+ GH
Sbjct: 693 FTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDV----YIYNVMIYGH----------- 737
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G +++AL +L M E+G IP+ +D +I L
Sbjct: 738 ---CKQGLLEEALTMLSKMEENGCIPNAVTFDIIINAL 772
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKPDV 51
C + EA+ V+ M NV TY T+++ Y ++ VK G+ PDV
Sbjct: 214 CKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDV 273
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP---------NVVTLIHLHNVIDIGH-- 100
++Y +++GFCK+ R ++ + L E I P + + H + + H
Sbjct: 274 HSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRL 333
Query: 101 -----IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P T N +I C +G+I +L + + G PS +TLIK L
Sbjct: 334 ELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGL 387
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +++ M +P+V TYTIL EA +L + +KPD
Sbjct: 492 FCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPD 551
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------VIDIG----- 99
V+TY +M+G+ V + + N GVTP+V T L N ++D
Sbjct: 552 VFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFK 611
Query: 100 ------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P T+T+++++ LC G+I L+ M + G+ Y++LI L
Sbjct: 612 EMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGL 667
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A K + + PNV Y + EAY + + G+ +V
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ ++ GFC VG+ E + LLN + + + PNV T+N ++
Sbjct: 169 VTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVC------------------TYNILV 210
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
ALC GK+ +A +L +M + + Y TL+
Sbjct: 211 DALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLM 245
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C D A K++ + PNV Y+ + EAY + + G+ DV
Sbjct: 423 CKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADV 482
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+ ++ GFC VG+ E + LLNE + + + P+V RT T ++
Sbjct: 483 VTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDV----------------RTYTI--LV 524
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
AL GK+ +A +L +M + P Y+TL+
Sbjct: 525 DALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLM 559
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 29/143 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + + M D G PN T+TIL +A E+ ++ G DV
Sbjct: 668 CKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDV 727
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y Y ++ G CK G E + +L++ E G PN V TF+ +I
Sbjct: 728 YIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAV------------------TFDIII 769
Query: 112 QALCGVGKIDKALLLLFLMYEHG 134
AL + DKA LL M G
Sbjct: 770 NALFKKDENDKAEKLLRQMIARG 792
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +A D + G+ N +Y L A ++L + KP+V
Sbjct: 388 CLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNV 447
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
Y+ ++D CK +E L +E +G++ +VV T++ +I
Sbjct: 448 EMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVV------------------TYSTLI 489
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C VGK+ +A+ LL M P Y L+ L ++
Sbjct: 490 YGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKE 530
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + + M G PNV Y L EA + ++ D ++P+V TY+ ++
Sbjct: 332 DAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTII 391
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
GF K G E N+ I G PNVV + N+I G
Sbjct: 392 YGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCP 451
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ITFNN I+ LC G+++ A+ +L M ++ +P+ Y+ L+ L
Sbjct: 452 PTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGL 499
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 62/199 (31%)
Query: 13 KVIDYMFDN----GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
K+I+ +++N G PNV TY +L A ++L+ + N G PD +YT V
Sbjct: 161 KMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTV 220
Query: 58 MDGFCKVG------------------------------RSNEVMELLNEAIERGVTPNVV 87
+ CK+G R E +L+NE ++RGV PNV+
Sbjct: 221 ISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVI 280
Query: 88 TLIHLHNVI-DIGHI----------------PRTITFNNVIQALCGVGKIDKALLLLFLM 130
+ + + + D+G++ P TF ++I+ G++ A+ L LM
Sbjct: 281 SYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLM 340
Query: 131 YEHGKIPSRTLYDTLIKKL 149
G P+ Y+TLI L
Sbjct: 341 IREGVSPNVVAYNTLIHGL 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 23/173 (13%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEA------YEMLM----NVKNDGLKP 49
CY N + K+ + + G P+V Y +L+A ++M+ N+K++GL+P
Sbjct: 118 CYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEP 177
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIGHI------- 101
+V+TY ++ C+ G+ + +LL E +G P+ V+ + ++ +G +
Sbjct: 178 NVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELA 237
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
P +N +I +C + +A L+ M + G P+ Y T+I L
Sbjct: 238 MKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLS 290
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ D A + + M + G PNV YT + +A++++ N+ +DG P
Sbjct: 394 FAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPT 453
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V T+ + G C+ GR M +L++ + PN+ T
Sbjct: 454 VITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRT 491
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 29/136 (21%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A V+D M PN+ TY L EA ++ ++ ++ D
Sbjct: 465 CRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDC 524
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +M GF G +V++LL + + G+ + TIT N +
Sbjct: 525 VTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLD------------------TITVNTTV 566
Query: 112 QALCGVGKIDKALLLL 127
A C +GK+ A+ +L
Sbjct: 567 NAYCKLGKVKTAIKVL 582
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G PNV +YTI EAY +L ++N+G KPDV T+T ++ C GR
Sbjct: 221 MEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGR 280
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL----------HNVIDI-------GHIPRTITFNN 109
++ ++ + + P+ VT I L +V++I G+ + +
Sbjct: 281 ISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTA 340
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
VI ALC VG++ +AL + M + G +P + Y++LI
Sbjct: 341 VIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 377
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + F EA K+ M +N P+V L EA+ + +K L+P
Sbjct: 484 CCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEP 543
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
TY ++ G + G+ EVM LL E PN+ IT+N
Sbjct: 544 TDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNL------------------ITYNT 585
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ LC G ++ AL +L+ M G IP + Y+T+I L ++
Sbjct: 586 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 628
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E KV + M GY TY + +A ++ N+ + G P TY ++
Sbjct: 808 EMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 867
Query: 59 DGFCKVGRSNEVMELLNEAIERG----------------VTPNVVTLIHL-HNVIDIGHI 101
DG K GR + L NE +E G + N + HL +++D G
Sbjct: 868 DGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGIN 927
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P ++ +I LC G+++ L + E G P Y+ LI L +
Sbjct: 928 PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKS 978
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 29/146 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C+ +A+ V M + P+ TY T+L+ + E+ +K DG +V
Sbjct: 276 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 335
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTAV+D C+VGR E +E+ +E ++G+ +P ++N++I
Sbjct: 336 VAYTAVIDALCQVGRVFEALEMFDEMKQKGI------------------VPEQYSYNSLI 377
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIP 137
+ AL L M HG P
Sbjct: 378 SGFLKADRFGDALELFKHMDIHGPKP 403
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + + M + G N T Y IL + + ++ + G+ PD+ +YT ++
Sbjct: 878 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 937
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D CK G+ N+ + + +E G+ P++ IT+N +I L
Sbjct: 938 DTLCKAGQLNDGLTYFRQLLEMGLEPDL------------------ITYNLLIDGLGKSK 979
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++++A+ L M + G +P+ Y++LI L +
Sbjct: 980 RLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1012
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 67/213 (31%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+ + D ++ + M +GY+ NV YT + EA EM +K G+ P+
Sbjct: 310 FGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPE 369
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLN----------------------------EAIER-- 80
Y+Y +++ GF K R + +EL +AI+R
Sbjct: 370 QYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYE 429
Query: 81 -----GVTPNVVT----LIHL-------------HNVIDIGHIPRTITFNNVIQALCGVG 118
G+ P+VV L L H + +G P TIT+ +I+
Sbjct: 430 LMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKAS 489
Query: 119 KIDKALLLLFLMYEHGKIPS----RTLYDTLIK 147
K D+A+ + + M E+ +P +L DTL K
Sbjct: 490 KFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYK 522
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 18 MFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
+F N Y + + ++ YE++ K+ G+ PDV AV+ G K GR + +E
Sbjct: 410 LFINYYGKSGESIKAIQRYELM---KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL 466
Query: 78 IERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKI 120
GV+P+ +T + +++I+ +P + N++I L G+
Sbjct: 467 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRG 526
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
D+A + + + E P+ Y+TL+ L ++
Sbjct: 527 DEAWRIFYQLKEMNLEPTDGTYNTLLAGLGRE 558
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + + + G P++ TY +L EA + ++ G+ P++
Sbjct: 941 CKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNL 1000
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY +++ K G++ E ++ E + +G PNV T+N +I
Sbjct: 1001 YTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNV------------------FTYNALI 1042
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G D A M G +P+ + Y L +L
Sbjct: 1043 RGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQLPNQL 1080
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG----------VTP 84
A + +K G PD +TY ++D K R E++++ E +G +
Sbjct: 774 AEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIIS 833
Query: 85 NVVTLIHLHNVIDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
+V L ID+ G P T+ ++ L G+I+ A L M E+G
Sbjct: 834 GLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKA 893
Query: 138 SRTLYDTLI 146
+ T+Y+ L+
Sbjct: 894 NCTIYNILL 902
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTYTAVM 58
E +++ M+ + Y PN+ TY TIL+ A +ML ++ G PD+ +Y V+
Sbjct: 563 EVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 622
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNVIDIG 99
G K R NE + + +++ + P+ TL L + + IG
Sbjct: 623 YGLVKEERYNEAFSIFCQ-MKKVLIPDYATLCTILPSFVKIG 663
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 29/162 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN + +A +++ M + +PNV T++ L EA ++ + + P
Sbjct: 299 CLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 358
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++TY+++++GFC R +E + I + PNVV T+N
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV------------------TYNT 400
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I+ C ++++ + L M + G + + Y+TLI+ L Q
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA M + + P+
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY ++ GFCK R E MEL E +RG+ N V TLI
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P IT++ ++ LC GK++KAL++ + + P Y+ +I+ +
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +A+ + ++ G++PDV+TY +++ C GR ++ LL+ IER + PNVVT
Sbjct: 271 IDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSA 330
Query: 92 L-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L +I P T++++I C ++D+A + LM
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 135 KIPSRTLYDTLIK 147
P+ Y+TLIK
Sbjct: 391 CFPNVVTYNTLIK 403
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+K+ M +G P++ TY+IL +A + ++ ++PD+YTY +++
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ + +L +GV PNV I + +I C G
Sbjct: 509 GMCKAGKVEDGWDLFCSLSLKGVKPNV------------------IIYTTMISGFCRKGL 550
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++A L M E G +P Y+TLI+
Sbjct: 551 KEEADALFREMKEDGTLPDSGCYNTLIR 578
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 19/122 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---LHN----- 94
G +PD+ T +++++G+C R ++ + L+++ +E G P+ V TLIH LHN
Sbjct: 145 GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEA 204
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIK 147
++ G P +T+ V+ LC G ID AL LL M E GKI + +Y+T+I
Sbjct: 205 VALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIID 263
Query: 148 KL 149
L
Sbjct: 264 GL 265
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 29/152 (19%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTY 54
N EA ++D M G P++ TY I A +L ++ ++ DV Y
Sbjct: 199 NKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
++DG CK ++ L N+ +G+ P+V T+N++I L
Sbjct: 259 NTIIDGLCKYKHIDDAFALFNKMETKGIRPDV------------------FTYNSLISCL 300
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G+ A LL M E P+ + LI
Sbjct: 301 CNYGRWSDASRLLSNMIERKINPNVVTFSALI 332
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------- 94
++N + D+Y+Y +++ FC+ + + +L + ++ G P++VTL L N
Sbjct: 106 MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKR 165
Query: 95 ----------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144
++++G+ P T+TFN +I L K +A+ L+ M + G P Y
Sbjct: 166 ISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGA 225
Query: 145 LIKKL 149
++ L
Sbjct: 226 VVNGL 230
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 25/150 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID ++ +G H + A+ + + ++ + PD+ TY +++GFC GR ++ +L
Sbjct: 259 IIDGLWKDGRHSD--------AHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQL 310
Query: 74 LNEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCG 116
L E +ER + P+VVT L N ++ IP T+T++++I C
Sbjct: 311 LQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCK 370
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D A + +L G P ++TLI
Sbjct: 371 QNRLDAAEHMFYLTPTKGCSPDIITFNTLI 400
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+V TY IL EA E+ + + G+ PD TY++++DG CK R +E
Sbjct: 503 NGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562
Query: 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129
++ + + +P+VV TFN +I C G +D L L
Sbjct: 563 ATQMFDSMGSKSFSPDVV------------------TFNTLITGYCKAGMVDDGLELFCE 604
Query: 130 MYEHGKIPSRTLYDTLI 146
M + G + Y TLI
Sbjct: 605 MGQRGIVADAITYITLI 621
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A +++ M + +P+V T++ L EA E+ + + P
Sbjct: 298 FCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPS 357
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
TY++++DGFCK R + + +G +P+++T LI LH
Sbjct: 358 TVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLH 417
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G + TIT+ +I C VG ++ A LL M G P+ +TL+ L
Sbjct: 418 EMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGL 473
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYT 53
C+C+ + A + G+HP V T+ L + +++ + KP+V T
Sbjct: 125 CFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPNVVT 184
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113
+T +M+G C+ GR E + LL+ +E G+ PN IT+ ++
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMLEDGLQPN------------------QITYGTIVDG 226
Query: 114 LCGVGKIDKALLLLFLMYEHGK-IPSRTLYDTLIKKL 149
+C +G AL LL M E IP+ +Y+T+I L
Sbjct: 227 MCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGL 263
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 75/190 (39%), Gaps = 39/190 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
+C +N A + G P++ T+ T++ Y ++L + GL +
Sbjct: 368 FCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVAN 427
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
TYT ++ GFC+VG N +LL E I GV PNVVT L + D G +
Sbjct: 428 TITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFK 487
Query: 102 -------------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
P T+N +I L GK +A L M G +P Y
Sbjct: 488 AMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITY 547
Query: 143 DTLIKKLDQQ 152
++I L +Q
Sbjct: 548 SSMIDGLCKQ 557
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 41/185 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + K++ M + G N TYT L A ++L + + G+ P+
Sbjct: 403 YCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPN 462
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER------------GVTPNVVT-------LIH 91
V T ++DG C G+ + +E+ +A+++ GV P+V T LI+
Sbjct: 463 VVTCNTLLDGLCDNGKLKDALEMF-KAMQKSKMDIDASRPFNGVEPDVQTYNILICGLIN 521
Query: 92 LHNVIDI----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141
++ G +P TIT++++I LC ++D+A + M P
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVT 581
Query: 142 YDTLI 146
++TLI
Sbjct: 582 FNTLI 586
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDIG 99
+ Y++T +M FC + + + + G P VV TL+H + +D+
Sbjct: 115 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLF 174
Query: 100 HI---PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
H P +TF ++ LC G++ +A+ LL M E G P++ Y T++ +
Sbjct: 175 HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGM 227
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++ EA ++ D M + P+V T+ L + E+ + G+ D
Sbjct: 555 CKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADA 614
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ GF KV + +++ E I GV P+ +T+
Sbjct: 615 ITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITI 652
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K +F ++ M + G NV Y + E + L + +G +PD+
Sbjct: 286 CKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDI 345
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
TY ++ G C+ G+ +E ELL AI+RG++PN ++ LIH++
Sbjct: 346 TTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIG 405
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + GH + + ++ L G++D AL + M E G +P +Y+ L+ L
Sbjct: 406 MTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGL 460
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
YC +A + M D + P+ TY TI++ Y ++ + KP+
Sbjct: 530 YCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPN 589
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT++++GFC+ G S+ + E G+ PNVV T+ +
Sbjct: 590 VVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVV------------------TYTIL 631
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C GKI KA LM + IP+ ++ LI L
Sbjct: 632 IGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGL 670
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 34/176 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
E K + ++ +NG P++TTY L EA E+L + GL P+ +YT ++
Sbjct: 328 EVGKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLI 387
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVIDIGHI 101
+CK G+ +L E+G ++V L+H +++ G +
Sbjct: 388 HVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVL 447
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG----KIPSRTLYDTLIK--KLDQ 151
P +N ++ LC G++ A LLL M S TL D I+ KLD+
Sbjct: 448 PDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDE 503
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y +ND A K+ M PNV TYT L A + +++ GLKP+
Sbjct: 565 YVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPN 624
Query: 51 VYTYTAVMDGFCKVGRSNEV-----MELLNEAIER---------GVTPNVVTLIH----- 91
V TYT ++ FCK G+ ++ + LLN I G+T N+ T +
Sbjct: 625 VVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANE 684
Query: 92 ------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+I G R +N+V+ LC ++ AL L M G P
Sbjct: 685 SLEIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDP 744
Query: 140 TLYDTLI 146
+ L+
Sbjct: 745 VSFAALV 751
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E RK+I+ + G PN+ Y L A + +K G P
Sbjct: 216 CKERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTT 275
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV--------VTLIH---------LHN 94
TY +++G CK V LL E ERGV NV + H L
Sbjct: 276 ETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRW 335
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + G P T+N +I C GK+ +A LL + G P++ Y LI
Sbjct: 336 ITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLI 387
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 29/147 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V D M + G P+ Y +L A +L+ + + L D + ++D
Sbjct: 434 ALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVD 493
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GF + G+ +E +L I +G+ P VV +N +I+ C G
Sbjct: 494 GFIRHGKLDEAKKLFELTIAKGMDPGVV------------------GYNAMIKGYCKFGM 535
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ AL + M + P Y T+I
Sbjct: 536 MNDALTCVQRMKDGDHSPDEFTYSTII 562
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
D A ++D M G P + TY + +A+E+ + + G+ PDV ++
Sbjct: 144 GDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF 203
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNVID 97
T ++ GFC+VG E +++ E RG+ P++V+ + +L +
Sbjct: 204 TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC 263
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +P + + VI C G + AL + M G +P Y+TL+ L
Sbjct: 264 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 315
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C +A +V D M G P+V TY +L+A +L ++ G+ PD
Sbjct: 280 FCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPD 339
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID 97
+ T+T ++ G+C G+ ++ ++L + + + + P++VT L +++ D
Sbjct: 340 LCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWD 399
Query: 98 IGH----IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
H P +T++ +I + C G+++ A L M G +P+ Y+++IK
Sbjct: 400 DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 453
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +F + VI M P+V T+ ++ A ++ ++ + GLKP
Sbjct: 105 YCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPG 164
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
+ TY +V+ G C+ G ++ E+ E + GV P+V + I + +G I
Sbjct: 165 IVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYK 224
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P ++F+ +I GK+D A+ L M G +P +Y +I
Sbjct: 225 EMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 277
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 63/213 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A +V M D G P+V ++TIL EA ++ +++ G+KPD+
Sbjct: 176 CRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDL 235
Query: 52 YT-----------------------------------YTAVMDGFCKVGRSNEVMELLNE 76
+ YT V+ GFC+ G ++ + + +E
Sbjct: 236 VSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDE 295
Query: 77 AIERGVTPNVVTLIHLHNVI-----------------DIGHIPRTITFNNVIQALCGVGK 119
+ G P+VVT L N + + G P TF +I C GK
Sbjct: 296 MVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK 355
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+DKAL L M P Y+TLI + +Q
Sbjct: 356 LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 388
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D +A + D M PN TY+IL +A+ L + N G+ P++
Sbjct: 386 CRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNI 445
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDIGHI 101
TY +++ G+C+ G ++ + L + + V+P+++ TLIH +H+ + ++
Sbjct: 446 MTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNM 505
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N +I G + +A + M G P R Y ++I
Sbjct: 506 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMI 557
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y ++ +A K+++ M P+V TY +L EA + + G++PD
Sbjct: 490 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 549
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81
YTY ++++G G S E +L +E ++RG
Sbjct: 550 RYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + + +K + M N P++ TY L +A+++L ++ + ++PD
Sbjct: 455 YCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD 514
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
V TY +++GF G E + + +G+ P+ T + + N GH+
Sbjct: 515 VVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMIN----GHV 561
>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 31/150 (20%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEM--LMNVKNDGLK 48
+C + A V+ +M G PNV TY L EA + LM + +G
Sbjct: 297 FCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCL 356
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
P V T+ +++ G+CKV ++ M LL+E + +G+ P+V T+
Sbjct: 357 PSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDV------------------FTWT 398
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
++I C V K A L F M EHG++P+
Sbjct: 399 SLIGGFCEVKKPLAARELFFTMKEHGQVPN 428
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M + GYH N TY L A E L + L P+V
Sbjct: 156 CIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNV 215
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
Y A++DG CK G E + LL+E V PNVVT + L N
Sbjct: 216 VVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFN 275
Query: 95 --VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V + G +P TF+ ++ C G + +A ++ M G P+ Y++LI
Sbjct: 276 EMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLI 329
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C AR++ M ++G PN+ T ++ EA + + GL D
Sbjct: 404 FCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLD 463
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ Y ++DG CK+G+ N+ +LL+ + +G+ ID + T+N +
Sbjct: 464 IVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLK------------ID------SYTYNIM 505
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ LC G +D A LL M E+G P++ Y+ ++ L
Sbjct: 506 IKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGL 544
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 32/182 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYH--PNVTTYTIL-----------EAYEMLMNVKNDGLK 48
YC ++ EA +V M G P+V T+ L +A +L + GL
Sbjct: 332 YCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLD 391
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIH 91
PDV+T+T+++ GFC+V + EL E G PN+ T +
Sbjct: 392 PDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTL 451
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-KIPSRTLYDTLIKKLD 150
++ G + +N ++ +C +GK++ A LL + G KI S T Y+ +IK L
Sbjct: 452 FRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYT-YNIMIKGLC 510
Query: 151 QQ 152
++
Sbjct: 511 RE 512
>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 477
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D M +G+ P++ TY IL A +L +++ G++P V +T ++DG
Sbjct: 278 RLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGL 337
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHNVIDIGHIPRT 104
+ G+ ++E ++ G TP+VV + + G +P
Sbjct: 338 SRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNV 397
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I+ C GK +A LL M G P+ +Y TL+ L
Sbjct: 398 FTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNL 442
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 21/139 (15%)
Query: 26 NVTTYTILE-AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP 84
V Y +++ YE ++ DG PDV TY VM ++G+++ + LL+E ++ G +P
Sbjct: 234 GVKQYKLIDWVYEQMLE---DGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSP 290
Query: 85 NVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ T L+H L ++ ++G P I F ++ L GK++ +
Sbjct: 291 DLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFM 350
Query: 128 FLMYEHGKIPSRTLYDTLI 146
M + G P Y +I
Sbjct: 351 DEMVKVGCTPDVVCYTVMI 369
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 24/93 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
Y + + +A ++ M + G PN V+TY +++ GF
Sbjct: 372 YISGGELEKAEEMFKEMTEKGQLPN------------------------VFTYNSMIRGF 407
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
C G+ E LL E RG PN V L N
Sbjct: 408 CMAGKFKEACSLLKEMESRGCNPNFVVYSTLVN 440
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
+C K EA +D M G PNV TY T+++ Y+ L +K G+ PD
Sbjct: 340 FCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPD 399
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++ GF V LL+E E GV ++V T+N +
Sbjct: 400 VKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLV------------------TYNVL 441
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I ALC G++ KA+ LL M E G P Y+ +I
Sbjct: 442 IGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAII 477
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A K++D M + G P TY + A+++ + ++ + +V
Sbjct: 446 CCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANV 505
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHIP 102
T + FCK+G+ +E +LNE +E+G+ PN +T +++ +I+ G++P
Sbjct: 506 VTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYVP 557
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 36/177 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY------------EMLMNVKND-GLK 48
C +A V M G P+V TY T+++ Y +ML+ N G+
Sbjct: 199 CKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGIS 258
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------------L 89
P+V T+ +++G+CK +++ E + G+ N+VT L
Sbjct: 259 PNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKL 318
Query: 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ + + +P T N+V+ C G + +A + M + G P+ Y+TLI
Sbjct: 319 VEEMEELGLATLP---TLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLI 372
Score = 42.7 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LI 90
+ PD +T+ V+ G CK G+ + ++ + G+ P+VVT +
Sbjct: 184 VSPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMY 243
Query: 91 H----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
H L + G P +TFN +I C I A+ + M +HG + Y +L+
Sbjct: 244 HVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLV 303
Query: 147 KKL 149
L
Sbjct: 304 SGL 306
>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
Length = 380
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 29/143 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C+ EA V+D M + G P V +YT +LEA ++ + G PDV
Sbjct: 160 CDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCKQGRVLEAERLVDTMIQVGCAPDV 219
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y+ ++ G C+VG +V +L E+ +G TPN V T+N +
Sbjct: 220 ISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAV------------------TYNIYM 261
Query: 112 QALCGVGKIDKALLLLFLMYEHG 134
ALC +G +D+A + +M G
Sbjct: 262 SALCRMGFLDEAFRQVDVMLSRG 284
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 29/149 (19%)
Query: 12 RKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60
R M G P+ TY L EA+ +L ++ +G+ P V +YTA++ G
Sbjct: 134 RAFFGTMAAMGCAPDAATYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHG 193
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120
+CK GR E L++ I+ G P+V I+++ +IQ LC VG+
Sbjct: 194 YCKQGRVLEAERLVDTMIQVGCAPDV------------------ISYSVLIQGLCRVGEF 235
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K +L G P+ Y+ + L
Sbjct: 236 GKVERILGESEAKGWTPNAVTYNIYMSAL 264
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 29/128 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + +D M G + T IL EA +L + DV
Sbjct: 265 CRMGFLDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMFSEAVSLLEYSEELNWNVDV 324
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+ Y +M C G V++LL + +++G+ P++ +F I
Sbjct: 325 FCYNTLMSRLCDAGDFARVLKLLVDLVKKGIGPDM------------------FSFTIAI 366
Query: 112 QALCGVGK 119
++LC GK
Sbjct: 367 RSLCRAGK 374
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKP 49
C C A + M D G PN+ T+ T L Y + +VK G KP
Sbjct: 434 CLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKP 493
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI--- 105
DV T++ +++ C+ + + E +E G+ PN +T I + + G R++
Sbjct: 494 DVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLF 553
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+N IQ+ C + K+ KA LL M G P Y TLIK L +
Sbjct: 554 AKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSE 612
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C +D E ++ D G P Y +L E L + DGL
Sbjct: 364 CLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLS 423
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IH--L 92
VY+Y AV+D CK R L E +RG++PN+VT +H L
Sbjct: 424 SVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVL 483
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G P ITF+ +I LC +I A M E G P+ Y+ LI+
Sbjct: 484 EKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIR 538
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 30/161 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + +A M + G PN TY IL + ++ +K +GL P
Sbjct: 504 CLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSP 563
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+Y Y A + FCK+ + + ELL + G+ P+ T++
Sbjct: 564 DLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPD------------------NFTYST 605
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+I+AL G+ +A + + HG +P + L+++LD
Sbjct: 606 LIKALSESGRESEAREMFSSIERHGCVPD-SYTKRLVEELD 645
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G P+ TY IL EA ++ ++ +G +P+V+TYT ++DGF GR
Sbjct: 206 MRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGR 265
Query: 67 SNEVMELLNEAIERGVTPNVVTL 89
+E ++ L R + PN T+
Sbjct: 266 VDEALKQLEMMRVRKLNPNEATI 288
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
AY +++DG KPD +TY ++ G CK G +E + L+ + + G PNV
Sbjct: 199 AYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNV-------- 250
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
T+ +I G++D+AL L +M
Sbjct: 251 ----------FTYTILIDGFLIAGRVDEALKQLEMM 276
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 29/169 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K EA+ D + + + P+V YT I +A E+ ++K G+KP+V
Sbjct: 259 CKKRRANEAQSFFDSL-KHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNV 317
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
YTY+ V+D C+ G+ ++ +E I+ G PN VT L+ +H
Sbjct: 318 YTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQ 377
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
+ +G TI++N +I++ C +++A +L LM + G P+ + ++
Sbjct: 378 MKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFN 426
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 29/165 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A VID M G V T++ L EA +++ G PD+ ++ V+
Sbjct: 197 AWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVIS 256
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI----------------P 102
CK R+NE ++++ P+VV L H G I P
Sbjct: 257 SLCKKRRANEAQSFF-DSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKP 315
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
T++ VI +LC G+I +A + M + G P+ +++L++
Sbjct: 316 NVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMR 360
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA K+++ M G PN +T+ + A+ M +K +P+
Sbjct: 397 HCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPN 456
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +M F + ++ V+++ E E V PNV T+ +
Sbjct: 457 TLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVN------------------TYRIL 498
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
I C + + A L+ M E + P+ ++Y+T+++ L
Sbjct: 499 ISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELL 538
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 29/151 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A+ V + + G PNV +Y+++ EA ++ + + P+ TY++++
Sbjct: 317 KAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLI 376
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
DG CK GR ++V +L++E RG N+ IT+N+++ LC
Sbjct: 377 DGLCKSGRISDVWDLIDEINNRGQPANI------------------ITYNSLLNGLCKNH 418
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++DKA+ LL M + G P + Y TL+ L
Sbjct: 419 QVDKAIALLTKMKDEGIQPDMSTYTTLVDGL 449
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +ID + + G N+ TY L +A +L +K++G++PD+
Sbjct: 380 CKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDM 439
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT ++DG CK GR + + + + +G N I ++ V+ I
Sbjct: 440 STYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLN----IRMYTVM--------------I 481
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G D+AL LL M ++G +P Y+TLI L
Sbjct: 482 NGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISAL 519
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +A + M +PNV T+ L EA +L + + + P+
Sbjct: 204 FCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPN 263
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------------HLHN 94
VYT+ ++DG CK G + +L+ I++GV PNVVT H+ N
Sbjct: 264 VYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFN 323
Query: 95 VIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I + G P +++ +I LC +D+A+ L M+ P+ Y +LI L
Sbjct: 324 TISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGL 379
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------I 90
++PDV YTA++D FCK + +L +E I + + PNVVT +
Sbjct: 190 VRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAV 249
Query: 91 HLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L N + + ++ P TFN +I LC G++ KA +L +M + G P+ Y +L+
Sbjct: 250 GLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLM 306
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A+++ + GY N+ YT++ EA +L ++++G PD
Sbjct: 450 CKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDA 509
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIER 80
TY ++ K ++ + ++LL E I R
Sbjct: 510 VTYETLISALFKNNKNGKAVKLLREMIAR 538
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 29/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K EA D + + + P+V YT I +A E+ ++K G+KP+V
Sbjct: 224 CKKRRASEAELFFDSL-KHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNV 282
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLH--------------N 94
YTY+ V+D C+ G+ ++ +E I+ G PN VT L+ +H
Sbjct: 283 YTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQ 342
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ +G TI++N +I++ C +D+A+ +L M + G P+ + ++++
Sbjct: 343 MKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSI 393
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 28/148 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
EA + M D G P+ +++I+ E+ + +PDV YT+++
Sbjct: 196 EAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVH 255
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G+C+ G + E+ ++ E GV PNV T ++ VI +LC G+
Sbjct: 256 GWCRAGDIAKAEEVFSDMKEAGVKPNVYT------------------YSIVIDSLCRCGQ 297
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I +A + M + G P+ +++L++
Sbjct: 298 ITRAHDVFSEMIDAGCDPNAVTFNSLMR 325
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----ILE------AYEMLMNVKNDGLKPD 50
+C + EA KV+D M G PN +T+ I E A+ M +K P+
Sbjct: 362 HCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPN 421
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +M F + V++L E E V PNV T+ +
Sbjct: 422 TLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVN------------------TYRIL 463
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
I C G + A L+ M E + P+ ++Y+T+++ L
Sbjct: 464 ILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELL 503
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 36/179 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C EA V M + P+V TY ++ A+E+L ++ KP+V
Sbjct: 347 CRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNV 406
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------------LIHL 92
T+ +M+G C+VG+ + + LL ++ G++P++V+ L+
Sbjct: 407 RTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSS 466
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG----KIPSRTLYDTLIK 147
N DI P +TF +I A C GK D A L LM G ++ TL D + K
Sbjct: 467 MNCFDIE--PDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCK 523
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + D M + G P+ TYT+L +A+ + + G KP+V
Sbjct: 277 CEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNV 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--------- 101
+TYT ++DG C+ G+ E + + ++ + P+V+T L N G +
Sbjct: 337 HTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTV 396
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P TFN +++ LC VGK KA+ LL M ++G P Y+ LI L ++
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCRE 454
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 29/137 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V TYT L ++ +L +K G P+VY YT +++G C+ GR E
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+LL+ + GV+PN VT + V+ G++ NN GK+D+AL + M
Sbjct: 636 EKLLSAMQDSGVSPNHVT----YTVMVKGYV------NN--------GKLDRALETVRAM 677
Query: 131 YEHGKIPSRTLYDTLIK 147
E G + +Y +L++
Sbjct: 678 VERGYELNDRIYSSLLQ 694
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 63/212 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++A ++ M DNG P++ +Y +L AY++L ++ ++PD
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDC 476
Query: 52 YTYTAVM-----------------------------------DGFCKVGRSNEVMELLNE 76
T+TA++ DG CKVG++ + + +L
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILET 536
Query: 77 AIERGV--TPNVVTLI---------------HLHNVIDIGHIPRTITFNNVIQALCGVGK 119
++ + TP+ + +I L + +G +P +T+ ++ L G
Sbjct: 537 LVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I + +L LM G +P+ Y +I L Q
Sbjct: 597 ITGSFRILELMKLSGCLPNVYPYTIIINGLCQ 628
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E ML + GL P V TYT ++DG + G +L G PNV
Sbjct: 564 EELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVY------ 617
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P TI +I LC G++++A LL M + G P+ Y ++K
Sbjct: 618 --------PYTI----IINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 31/141 (21%)
Query: 12 RKVIDYMFDNGYHPNVTTYTILEAYEMLMN-VKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
R +++ + NGY EA EM M+ + G D + T+++ GFC
Sbjct: 199 RTIVNALCKNGYT---------EAAEMFMSKILKIGFVLDSHIGTSLLLGFC-------- 241
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVI--DIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
RG+ N+ + + +V+ ++ P +++++ +I LC VG++++A L
Sbjct: 242 ---------RGL--NLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKD 290
Query: 129 LMYEHGKIPSRTLYDTLIKKL 149
M E G PS Y LIK L
Sbjct: 291 QMGEKGCQPSTRTYTVLIKAL 311
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
EA K + M DNG P+V +T L + ML+N +PDV+ YT+V+
Sbjct: 73 EAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIH 132
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRT-------------- 104
G+CK G + ++L E + G P+ + + + +G +
Sbjct: 133 GYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLG 192
Query: 105 --ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+TF +I+AL GK+D+A L M E G P + D+LI L
Sbjct: 193 DYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFAL 239
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPDVYTYTAVM 58
EAR V D M + G P+ TY TI++ + + NV+ G+ PD + Y ++M
Sbjct: 591 EARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLM 650
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI---------------- 101
DG+ K+ R ++ + + + G+ PN VT + +H + G
Sbjct: 651 DGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEV 710
Query: 102 -PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +++ +I L G++ +A M + G IP Y +LI L
Sbjct: 711 PPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSL 759
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVM 58
EARK++D M G P TY I EA E++ ++ G +P ++ +T+++
Sbjct: 486 EARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 545
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ GR+ E ++L E RG P+V I + ++I L G
Sbjct: 546 SYYLSKGRAEEAYQVLTEMTARGCAPDV------------------ILYTSLIDLLFSTG 587
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ +A + M E G P Y T+I+ +
Sbjct: 588 RVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 620
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 29/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ M G P + +Y + EAY+ ++ ++G +PDV
Sbjct: 31 CKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDV 90
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIH--------------LHN 94
+T ++ GFCK G+ LLN+A++R P+V ++IH L
Sbjct: 91 IAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEE 149
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G IP + +I LC +G++D+A L M + G + + TLI+ L
Sbjct: 150 MLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEAL 204
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA++VI M + G P + +T L EAY++L + G PD
Sbjct: 513 FCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPD 572
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V YT+++D GR E + + IE+G P+ +T+ +
Sbjct: 573 VILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPD------------------ALTYGTI 614
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
IQ +G ++ A +L LM + G P Y++L+
Sbjct: 615 IQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLM 650
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I EA E+ +K G P+V YTAV+DG K GR + ++ + P T
Sbjct: 379 IDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTV 438
Query: 92 L-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ ++ G +P TIT+ +I K+D+A LL +M G
Sbjct: 439 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 498
Query: 135 KIPSRTLYDTLI 146
P+ Y +++
Sbjct: 499 PEPTAVTYGSIV 510
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P TTYT++ +A ++ + G PD TYT ++DGF K + +E +L
Sbjct: 431 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 490
Query: 74 LNEAIERGVTPNVVT---LIHLHNVIDI--------------GHIPRTITFNNVIQALCG 116
L+ + +G P VT ++H +D+ G P F +++
Sbjct: 491 LDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLS 550
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ ++A +L M G P LY +LI L
Sbjct: 551 KGRAEEAYQVLTEMTARGCAPDVILYTSLIDLL 583
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 22/170 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + K++ M + P++ TY IL +A E+ + + G KP+
Sbjct: 274 YCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPN 333
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-----------IG 99
TYT ++ G R E +EA++ V+ + ID G
Sbjct: 334 AATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAG 393
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + + VI L G+I+ L M +P+RT Y +I L
Sbjct: 394 CSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGL 443
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 29/157 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N EA ++ M + GY P + L EA E+ V +
Sbjct: 206 NHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRV 265
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
Y ++MDG+CK+GR ++ ++LL + +E + P T+N ++
Sbjct: 266 AYNSLMDGYCKLGRVDDGLKLLLQMVE------------------CDNFPDIQTYNILVA 307
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D AL L L+ +G P+ Y T+I+ L
Sbjct: 308 GFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGL 344
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA + L + GL PDV V++G CK + ++ +EL E G P +V
Sbjct: 3 EALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIV------ 56
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++N VI L + K+D+A M ++G P + TLI
Sbjct: 57 ------------SYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLI 97
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA M D G P TYT L EA +++ ++ G+ PDV Y+A++
Sbjct: 732 EAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 791
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
G + ++ E ++RG PN VT
Sbjct: 792 TGLIDSSMVDTAWDVFQEMMKRGCAPNEVT 821
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 29/132 (21%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P + +YTIL EA+ + + G+ P+ +TYT+++ K GR E +L
Sbjct: 712 PTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKL 771
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ + ++ GV P+V ++ +I L +D A + M +
Sbjct: 772 VEDMVKLGVNPDVQ------------------AYSALITGLIDSSMVDTAWDVFQEMMKR 813
Query: 134 GKIPSRTLYDTL 145
G P+ Y L
Sbjct: 814 GCAPNEVTYKVL 825
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + +A+ + +M +G PN+ TY TI+ Y +L +K ++PD
Sbjct: 232 CKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDS 291
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY +++ G CK GR E ++ E +++G+ P+ V +N +I
Sbjct: 292 FTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV------------------IYNTLI 333
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C G +D A M + G P+ + Y++LI L
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 18 MFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77
MF+ + + + A+E+L ++ + PD T+ +M G C+ G+ E EL +E
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527
Query: 78 IERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVGKI 120
RG+ P+ ++ L + ++D G P +T+N ++Q LC +
Sbjct: 528 KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEG 587
Query: 121 DKALLLLFLMYEHGKIPSRTLYDTLIK 147
D A LL M G P T Y TLI+
Sbjct: 588 DLAEELLKEMVSKGMTPDDTTYFTLIE 614
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CNK + A D M G P ++TY L EA M+ ++ G+ PD
Sbjct: 336 FCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPD 395
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI------------ 98
TY +++G+C+ + + L +E + G+ P T L +V+
Sbjct: 396 AITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFK 455
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G +P I FN +I C + A LL M P ++T+++
Sbjct: 456 KITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQ 509
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKPD 50
+C + EAR++ D M G P+ ++ T++ Y ++K+ G P
Sbjct: 511 HCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP 102
V TY A++ G CK + ELL E + +G+TP+ T L I +IP
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIP 622
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDG-----------LKPDV 51
C+ N EA + M + G P + T L + + +N +K V
Sbjct: 162 CDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
YT+ +++ CK G+ + + + GV PN+VT +H G +
Sbjct: 222 YTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTT 281
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P + T+ ++I +C G++++A + M + G PS +Y+TLI
Sbjct: 282 MKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
F++ V DY+ + N EA+E +K G+ P + T +++ F K+ R+
Sbjct: 148 FKSSIVFDYLIKSCCDMNRAD----EAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTE 203
Query: 69 EVMELLNEAIERGVTPNVVTLIHLHNVID-----------IGHI------PRTITFNNVI 111
L E + +V T + NV+ +GH+ P +T+N ++
Sbjct: 204 AAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV 263
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C G+++ A +L M P Y +LI + +Q
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQ 304
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
Y + D +A +V + M D G++P V TY L A E+L + + G+ PD
Sbjct: 546 YSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPD 605
Query: 51 VYTYTAVMDGFCKVGRSNE 69
TY +++G KV +E
Sbjct: 606 DTTYFTLIEGIAKVNIPDE 624
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 34/181 (18%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
+ D + +++ M G PN+ TYTI +A+ + + ++G PDV T
Sbjct: 248 RGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVIT 307
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HNVID 97
YT ++D C G+ ++ EL + +P+ VT I L N ++
Sbjct: 308 YTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEME 367
Query: 98 I-GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI------KKLD 150
+ G+ P +T+ +I+ALC G +D+A +L +M G P+ Y+T+I ++LD
Sbjct: 368 VDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLD 427
Query: 151 Q 151
+
Sbjct: 428 E 428
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 23/166 (13%)
Query: 9 FEARKVIDYMFD-NGYHPNVTTYTIL-----EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
F RK+ + F N Y N + +L EA ++ + ++G+KP + TY+A+M
Sbjct: 187 FALRKMTEVGFILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALG 246
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI----------PRTI 105
+ G + ++M LL E G+ PN+ T L + D I P I
Sbjct: 247 RRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVI 306
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T+ +I ALC GK+DKA L M P R Y TL+ K +
Sbjct: 307 TYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGK 352
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 37/177 (20%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C + +A+ V D N G HP + +Y L +A E+ ++K+ G P+
Sbjct: 771 CKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPN 830
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
+TY ++D K R N++ +L +E RG PN +T HN+I +
Sbjct: 831 NFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAIT----HNIIISALVKSNNLNKAL 886
Query: 102 ------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ +I L G+ ++A+ + M ++G P+ +Y+ LI
Sbjct: 887 DLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILI 943
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHP-----NVTTYT------ILEAYEMLMNVKNDGLKPD 50
Y D +A + M G P N + YT I EA ++ ++ GL PD
Sbjct: 455 YGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPD 514
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
TY +M + K G+ ++ +LL+E I +G P+V+ + L N +
Sbjct: 515 SVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFG 574
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
++ P +T+N ++ L GKI KAL L M E G P+ +++L+ L +
Sbjct: 575 RLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSK 632
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A K+ + M D G PN Y IL A E+ + +G++PD+ +YT ++
Sbjct: 919 QAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILV 978
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ C GR +E ++ E G+ P+ T+++N +I L
Sbjct: 979 ECLCITGRIDEAVQYFEELKLTGLDPD------------------TVSYNFIINGLGKSR 1020
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D+AL L M G P Y+ LI
Sbjct: 1021 RLDEALSLFSEMKNRGISPDLYTYNALI 1048
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 63/206 (30%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYT 55
D ++ + M +GY P+V TYTIL A++ML + G+ P+++TY
Sbjct: 355 DLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYN 414
Query: 56 AVMDGFCKVGRSNEVMELLN----------------------------EAIE-------R 80
++ G K R +E +ELL +AI+ R
Sbjct: 415 TMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKR 474
Query: 81 GVTPNVVTL-IHLHNVIDIGHI----------------PRTITFNNVIQALCGVGKIDKA 123
G+ P++ L+ + + G I P ++T+N +++ G+IDKA
Sbjct: 475 GIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKA 534
Query: 124 LLLLFLMYEHGKIPSRTLYDTLIKKL 149
LL M G P + ++LI L
Sbjct: 535 TQLLSEMISKGCEPDVMIINSLINTL 560
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ M G P++ +YTIL EA + +K GL PD +Y +++
Sbjct: 955 ACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIIN 1014
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL-------------HNVIDIGHIP 102
G K R +E + L +E RG++P++ T ++HL + +G P
Sbjct: 1015 GLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEP 1074
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
T+N +I+ G D+A + M G P+ + L K
Sbjct: 1075 SVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNK 1120
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 29/163 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY +A +++ M G P+V L A++M +KN L P
Sbjct: 524 CYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAP 583
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K G+ + +EL E G PN TITFN+
Sbjct: 584 TVVTYNILLTGLGKEGKILKALELFGSMTESGCPPN------------------TITFNS 625
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ L +D AL + M P Y+T+I L ++
Sbjct: 626 LLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIRE 668
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPDV 51
C +A+++ M + + P+ TY L E + N ++ DG PDV
Sbjct: 316 CAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDV 375
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYT +++ CK G + ++L+ +G+ PN LH T+N +I
Sbjct: 376 VTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPN------LH------------TYNTMI 417
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
L ++D+AL LL M G P+ Y
Sbjct: 418 CGLLKARRLDEALELLENMESLGVKPTAFSY 448
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M + G P++ TY L A +M ++ GL+P V+TY A++
Sbjct: 1024 EALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALI 1083
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
G G ++ + + + G +PN T L N
Sbjct: 1084 RGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPN 1119
>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D EA K+ M NG P+ TY+I Y +L K L P
Sbjct: 266 CKGGKRD--EAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLP 323
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH--------- 100
+V+TY V+ CK E ++L+E IERGVTP+ + +N I H
Sbjct: 324 NVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWS----YNAIQAYHCDHSEVNSA 379
Query: 101 ------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P T+N V++ L VG+ D+A + M + G PS + Y +I
Sbjct: 380 LNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMI 437
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
P V TY+ + G+ VG SN ++ +E ERG +ID+ +
Sbjct: 216 FNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGC------------LIDV------LA 257
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+N++++ALC GK D+A + M +G P Y I+ Q+
Sbjct: 258 YNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQE 303
>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C K D EA K+ M NG P+ TY+I Y +L K L P
Sbjct: 266 CKGGKRD--EAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLP 323
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH--------- 100
+V+TY V+ CK E ++L+E IERGVTP+ + +N I H
Sbjct: 324 NVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWS----YNAIQAYHCDHSEVNSA 379
Query: 101 ------------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+P T+N V++ L VG+ D+A + M + G PS + Y +I
Sbjct: 380 LNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMI 437
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTIT 106
P V TY+ + G+ VG SN ++ +E ERG +ID+ +
Sbjct: 216 FNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGC------------LIDV------LA 257
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+N++++ALC GK D+A + M +G P Y I+ Q+
Sbjct: 258 YNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQE 303
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA E+ +KN G+ PDVY+Y+ ++DGFC+ GR ++ E+ E G+ PN+
Sbjct: 298 EASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIY------ 351
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ +I C G++DKAL + M G +P Y LI
Sbjct: 352 ------------SYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILI 392
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 28/161 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K +A +V M ++G PN+ +Y+IL +A E+ +KN G+ PD
Sbjct: 325 FCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPD 384
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP---NVVTLI-------HLHNVI---- 96
VY+Y+ ++DGFC+ G + ++ E +P N +LI N +
Sbjct: 385 VYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFR 444
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+G P TI N+++ C +KAL L E+G
Sbjct: 445 IMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENG 485
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 26 NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
NV TYTIL AY + +K + PD YT+++ GFC G L
Sbjct: 559 NVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALF 618
Query: 75 NEAIERGVTPNVVTLIHLHN-----------------VIDIGHIPRTITFNNVIQALCGV 117
+E G +PNVVT N + + G P I + +I A C
Sbjct: 619 DEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNT 678
Query: 118 GKIDKALLLLFLMYEHGK-IPSRTLYDTLI 146
G++++A L M + G+ P+ +Y LI
Sbjct: 679 GEMNRAEALFDEMKQEGRCTPNVVMYTCLI 708
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K DF +A + + +NG H N +Y +A ++L + + PD
Sbjct: 465 YCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPD 524
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV------IDIGH---- 100
V Y+ ++ F K S + + L + + G+T NV T L N+ +D+ +
Sbjct: 525 VVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFK 584
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P I + +++ C G++ +A L M G P+ Y I
Sbjct: 585 GMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFI 637
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 32/178 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKND 45
C N R + + + G PN+ TYTI+ A E+L +
Sbjct: 180 CLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMS 239
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELL------NEAIERGVTPNVVTLIHLHNVID-- 97
G P+V TY + G CKVG L+ N+ + V+ + ++D
Sbjct: 240 GETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEA 299
Query: 98 ---------IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G +P +++ +I C G++D+A + M G +P+ Y LI
Sbjct: 300 SEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILI 357
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKND----------GLKPD 50
+C K D A K + M N + P+ Y ++++ Y N G+ PD
Sbjct: 395 FCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPD 454
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++ +C+ N+ + L + E GV N ++N
Sbjct: 455 TIACNHILSIYCRKPDFNKALALSEKFQENGVHFN------------------PYSYNEF 496
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I +C +KAL LL +M + +P Y TLI
Sbjct: 497 IHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLI 532
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC++ + A + M D G V TY + EA+ ++ + GL PD
Sbjct: 229 YCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPD 288
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
+TY +++G+CK G+ + M++ + +G+ VVT LIH +
Sbjct: 289 AFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFN 348
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G P +N +I + C G +D+A ++ M + P Y+TL++ L
Sbjct: 349 DAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGL 404
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
+M++ + + T + A+E++ ++ + PD TY +M G C +GR +E L+ E
Sbjct: 360 FMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEE 419
Query: 77 AIERGVTPNVV---TLIHLHN--------------VIDIGHIPRTITFNNVIQALCGVGK 119
+RG+ P++V TLI ++ ++ G P +T+N +I+ LC G+
Sbjct: 420 MTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQ 479
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
A L+ M +G P + Y +LI+ L +
Sbjct: 480 GGDAEDLVKEMVGNGITPDDSTYISLIEGLTTE 512
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 30/152 (19%)
Query: 25 PNVTTY-TILEAY----------EMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNEVME 72
PN TY T++ + E++ ++ G+ PD YTY V+ G+CKVG+ + +
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATK 204
Query: 73 LLNEAIERG-VTPNV-----------------VTLIHLHNVIDIGHIPRTITFNNVIQAL 114
+ +E + G V PN V L + ++D G T+N + L
Sbjct: 205 VFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTL 264
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G+ +A L+ M E G P Y+ LI
Sbjct: 265 FMEGRAAEAHALVEEMGEKGLAPDAFTYNILI 296
Score = 42.0 bits (97), Expect = 0.089, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHL- 92
EML K ++P+ Y A++ G+C G + E ++RGV+ V T +H
Sbjct: 208 EMLTEGK---VEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTL 264
Query: 93 ---------HNVID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
H +++ G P T+N +I C GK KA+ + +M G +
Sbjct: 265 FMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATV 324
Query: 140 TLYDTLIKKLDQQ 152
Y +LI L +
Sbjct: 325 VTYTSLIHALSMK 337
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 24/91 (26%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
Y K D +A KV D M G++P + TY A++ G
Sbjct: 439 YSMKGDIKDAVKVRDEMMGKGFNPT------------------------LLTYNAMIKGL 474
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
C G+ + +L+ E + G+TP+ T I L
Sbjct: 475 CLNGQGGDAEDLVKEMVGNGITPDDSTYISL 505
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 29/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A+++ D M +N + P+ TY+IL + E+ ++ G +PD+
Sbjct: 184 CKSKNVRKAQEIFDKM-NNRFSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDI 242
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNV-----------ID 97
TY ++D CK GR E + ++ + RG P L+H + V +D
Sbjct: 243 VTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLD 302
Query: 98 I---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G +P + +N ++ A C V K D A ++ M HG P+ ++ ++ L
Sbjct: 303 MEKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTL 357
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA V+ M G P Y++L +A ++++ DG+ PDV
Sbjct: 253 CKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDV 312
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGH---------- 100
Y A++ FCKV + + ++++ G++PN T I L+ +I +G
Sbjct: 313 VVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRN 372
Query: 101 -----IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P + T+ +I+ C KI+ AL + M +PS + LI L
Sbjct: 373 MIKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGL 426
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 28/160 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V + M G NV YT L EA + +KN+G +PD
Sbjct: 336 CKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDA 395
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY+ +++G CK GR ++ MEL + +GV N + L
Sbjct: 396 VTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEE 455
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ + G + +N +I AL GKID+AL L M E G
Sbjct: 456 MSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 495
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +A + ++ +G VYT+T ++DG K ++ E ++ ++ I++G+TP V +
Sbjct: 481 IDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRA 540
Query: 92 -----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L ++ +G IP T F ++I LC +I +A L + + G
Sbjct: 541 LAIGLCLCGKVARACKILDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRG 599
Query: 135 K-IPSR 139
+ IP R
Sbjct: 600 REIPGR 605
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 18 MFDNGYHPNVTTYTIL----------EAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGR 66
M +NG P++ TY L E+ E + V + G + PD TY ++ G+CK G+
Sbjct: 211 MKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGK 270
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ ME + + V P+ IT+ +IQA D L L
Sbjct: 271 LQKAMEKFRDMEMKNVKPD------------------KITYMTLIQACYSERDFDTCLSL 312
Query: 127 LFLMYEHG-KIPSRTLYDTLIKKLDQQ 152
M E G +IP + Y +I L +Q
Sbjct: 313 YLEMEERGLEIPPHS-YSLVIGGLCKQ 338
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 18/117 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+EAY + + G + +V YTA++D + K G E M L G P+ VT
Sbjct: 342 MEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVT---- 397
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ LC G++D + L G + Y +LI L
Sbjct: 398 --------------YSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGL 440
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 18/135 (13%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +A + + G D Y Y A++D K G+ ++ + L E G V T
Sbjct: 446 IEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTI 505
Query: 92 L-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L +ID G P +F + LC GK+ +A +L + G
Sbjct: 506 LIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMG 565
Query: 135 KIPSRTLYDTLIKKL 149
IP T ++ +I L
Sbjct: 566 IIP-ETAFEDMINTL 579
>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Glycine max]
Length = 945
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEA-----------YEMLMNVKNDGLKPD 50
YC + + +A+K D M + G P + T+ IL A +++ +++ G+ PD
Sbjct: 260 YCQRGEIEQAQKYFDAMQEEGMEPGLVTWNILIASYSQLGHCDIAMDLMRKMESFGITPD 319
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
VYT+T+++ GF + GR NE +LL + + GV PN +T+
Sbjct: 320 VYTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITI 358
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
LEA + + +V L+ DVY++ +++ G+C+ G + EL + E PNVV
Sbjct: 406 LEAAQSIFDVM---LERDVYSWNSIIGGYCQAGFCGKAHELFMKMQESDSPPNVV----- 457
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKLDQ 151
T+N +I G D+AL L + + GKI P+ +++LI Q
Sbjct: 458 -------------TWNVMITGFMQNGDEDEALNLFLRIEKDGKIKPNVASWNSLISGFLQ 504
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-LKP 49
YC +A ++ M ++ PNV T+ ++ EA + + ++ DG +KP
Sbjct: 431 YCQAGFCGKAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLRIEKDGKIKP 490
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
+V ++ +++ GF + + ++ +++ + + PN+VT++
Sbjct: 491 NVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVL 531
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 28/160 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA V + M G NV YT L EA + +KN+G +PD
Sbjct: 334 CKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDA 393
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY+ +++G CK GR ++ MEL + +GV N + L
Sbjct: 394 VTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEE 453
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ + G + +N +I AL GKID+AL L M E G
Sbjct: 454 MSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 493
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +A + ++ +G VYT+T ++DG K ++ E ++ ++ I++G+TP V +
Sbjct: 479 IDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRA 538
Query: 92 -----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L ++ +G IP T F ++I LC +I +A L + + G
Sbjct: 539 LAIGLCLCGKVARACKILDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRG 597
Query: 135 K-IPSR 139
+ IP R
Sbjct: 598 REIPGR 603
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 18 MFDNGYHPNVTTYTIL----------EAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGR 66
M +NG P++ TY L E+ E + V + G + PD TY ++ G+CK G+
Sbjct: 209 MKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGK 268
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
+ ME + + V P+ IT+ +IQA D L L
Sbjct: 269 LQKAMEKFRDMEMKNVKPD------------------KITYMTLIQACYSERDFDTCLSL 310
Query: 127 LFLMYEHG-KIPSRTLYDTLIKKLDQQ 152
M E G +IP + Y +I L +Q
Sbjct: 311 YLEMEERGLEIPPHS-YSLVIGGLCKQ 336
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 18/117 (15%)
Query: 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+EAY + + G + +V YTA++D + K G E M L G P+ VT
Sbjct: 340 MEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVT---- 395
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ LC G++D + L G + Y +LI L
Sbjct: 396 --------------YSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGL 438
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 18/135 (13%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +A + + G D Y Y A++D K G+ ++ + L E G V T
Sbjct: 444 IEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTI 503
Query: 92 L-----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L +ID G P +F + LC GK+ +A +L + G
Sbjct: 504 LIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMG 563
Query: 135 KIPSRTLYDTLIKKL 149
IP T ++ +I L
Sbjct: 564 IIP-ETAFEDMINTL 577
>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
Length = 447
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 27/171 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDG--LKPDV 51
+C +F +A +++D M NG PNV +T + + + L++ + G P+V
Sbjct: 40 FCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIGEDCAPNV 99
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
YTY+ ++D CK G+ +E L+ E +++G +PNVVT L+ L
Sbjct: 100 YTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKE 159
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ G IT+ ++ C ID+A LL + + + +L+ L
Sbjct: 160 MSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTAL 210
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 26/148 (17%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PNV TY+IL EAY ++ + G P+V TY A++DGF K+ R +EV+ L
Sbjct: 97 PNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLML 156
Query: 74 LNEAIERGVTPNVVTLIHL------HNVIDIGH-------IPRTITFNNVIQALCGV--G 118
L E +RG +V+T + +N ID + +T+N++ AL
Sbjct: 157 LKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGD 216
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +AL LL M + G P++ Y T++
Sbjct: 217 RTTEALSLLEKMIQEGTRPNQVNYRTVL 244
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ M G PN Y T+L EAY++L+++ + G K D +Y ++
Sbjct: 220 EALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILV 279
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL---IH-------LHNVIDI-------GHI 101
F GR+ + +ELL + G + T+ IH LH + G I
Sbjct: 280 VAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRGSI 339
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I A C + D A+ LL M + P+ Y+++IK
Sbjct: 340 PSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSF 387
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----------------TLIHLHNV 95
+Y +M GFCK G + +ELL+E GV PNVV L+H +
Sbjct: 32 SYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRI 91
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---KKLDQ 151
+ P T++ ++ ALC G+ +A L+ M + G P+ Y+ LI +KL++
Sbjct: 92 GE-DCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLER 149
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
+++ +++ M +GY + T ++ EA+++ ++ G P TY +
Sbjct: 289 YDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTL 348
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ FCK + + ++LL++ I+ PNV IT+N++I++ C
Sbjct: 349 IGAFCKAQQPDTAVKLLHQMIQADFKPNV------------------ITYNSIIKSFCRE 390
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ ++A + +M + G P R Y TL
Sbjct: 391 QREEEARGIFQMMVDSGCFPDRVSYTTL 418
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D EA ++ M G P+ TY L A ++L + KP+
Sbjct: 317 FCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPN 376
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V TY +++ FC+ R E + ++ G P+ V+
Sbjct: 377 VITYNSIIKSFCREQREEEARGIFQMMVDSGCFPDRVS 414
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 34/180 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C + + R + + + G P+V +Y+IL + Y++ +K GL
Sbjct: 560 CVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHL 619
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR----- 103
D Y V+DGFCK G+ N+ +LL E +G+ P VVT +VID + I R
Sbjct: 620 DTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVT---YGSVIDGLAKIDRLDEAY 676
Query: 104 --------------TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L+L + + G P+ ++ L+ L
Sbjct: 677 MLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDAL 736
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ + G PN T+ L EA N+KN P+ TY+ ++
Sbjct: 709 EAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMV 768
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G CKV + N+ E ++G+ PN TIT+ +I L VG
Sbjct: 769 NGLCKVRKFNKAFVFWQEMQKQGLKPN------------------TITYTTMISGLARVG 810
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ +A L G IP Y+ +I+ L
Sbjct: 811 NVLEAKDLFERFKSSGGIPDSACYNAMIEGLS 842
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A KV D M + G PN+ T I+ EA + + + + PD
Sbjct: 422 CKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDS 481
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
T+ +++DG + G+ N+ L + ++ G TPN V L
Sbjct: 482 VTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKE 541
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P + NN + + G+I+K L + G P Y LI L
Sbjct: 542 MMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGL 596
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 27/166 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A K + G P+ T+T + EA E+ + ++ P VY Y ++
Sbjct: 291 AWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIM 350
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVIDIGHIPR 103
G+ VG+ NE LL +G P+V+ + + + + P
Sbjct: 351 GYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPN 410
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++N +I LC G+++ AL + M E G P+ + +I +L
Sbjct: 411 LTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRL 456
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++D M N ++ ++ Y + A++ +K+ GL PD T+T+++
Sbjct: 256 ALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIG 315
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHNVID--------------IGHIP 102
CK R +E +EL E P V T+I + + G IP
Sbjct: 316 VLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIP 375
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +N ++ L GK+++AL +L M + P+ T Y+ LI L
Sbjct: 376 SVIAYNCILTCLGRKGKVEEALRILEAM-KMDAAPNLTSYNILIDML 421
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +N +A + + M G P+V T + L EAY + ++ G P+
Sbjct: 254 YCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPN 313
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------------------ 92
TY ++D K R NE + LL E + RGV +++ L
Sbjct: 314 HVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFR 373
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
H + D H P +T+ +I ALC G +D A +L M E P+ + ++I L
Sbjct: 374 HALSD-NHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGL 429
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C F EA + M G PN TY +L E+ +L V + G+ D+
Sbjct: 290 CKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDL 349
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHI--------- 101
YTA+MD CK G+ +E ++ A+ TPN VT L + + G++
Sbjct: 350 IMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSE 409
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +TF+++I L G + KA + M E G P+ Y T+I
Sbjct: 410 MEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVI 461
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D A V + M G +V Y L A +M+ +K DG++P+
Sbjct: 184 YCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPN 243
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT + +C+ ++ L E + +GV P+VVTL + +
Sbjct: 244 VVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTL------------------SAL 285
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC G+ +A L M + G P+ Y LI L
Sbjct: 286 VGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTL 324
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C EA ++ M G P+ TY + +A ++L +K +KP
Sbjct: 568 CLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKP 627
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
++ TY+ ++ G + G + LLNE G +P +T ++ +H
Sbjct: 628 NLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIH 687
Query: 94 N-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G +N +++ LC G KA+++L M G P ++ LI
Sbjct: 688 EWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALI 741
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V++ M G P+ T+ L A+ + G+ P+V T+ ++
Sbjct: 717 KAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLL 776
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTP----------------NVVTLIHLH-NVIDIGHI 101
G GR E +LNE +RG+ P N V + L+ ++ G +
Sbjct: 777 GGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFL 836
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P+ T+N +I VG + +A L M G +P+ YD L+
Sbjct: 837 PKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILV 881
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++ ++M + G ++T Y L +A +L + G+ PD T+ A++ G
Sbjct: 685 EIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGH 744
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K G + ++ + G++PNV TFN ++ L G+I
Sbjct: 745 FKSGHLDNAFSTYDQMLYHGISPNVA------------------TFNTLLGGLESAGRIG 786
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ ++L M + G PS YD L+ +Q
Sbjct: 787 ESDMVLNEMKKRGIEPSNLTYDILVTGYGKQ 817
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 19/134 (14%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI 90
EA L +++ GLKPD TY ++ + G++ + ++LLN + PN++ TLI
Sbjct: 577 EAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLI 636
Query: 91 --------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF-LMYEHGK 135
L+ + G P ++T V+QA C G+ +L + M G
Sbjct: 637 VGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA-CSQGRRSDLILEIHEWMMNAGL 695
Query: 136 IPSRTLYDTLIKKL 149
T+Y+TL++ L
Sbjct: 696 CADITVYNTLVRVL 709
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y +++ EA ++ M G+ P V+TY L +A E+ ++N G+ P
Sbjct: 814 YGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPT 873
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TY ++ G+ K+ EV + L + E+G +P+ TL
Sbjct: 874 SCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTL 912
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 26/136 (19%)
Query: 14 VIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
+ID +F G P A+++ + L PD Y ++ C +G+S E
Sbjct: 530 LIDGLFKTGNLP--------AAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESF 581
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
L E G+ P+ +T+N +I A GK KAL LL M
Sbjct: 582 LEEMQSTGLKPD------------------QVTYNTMIAAQSREGKTAKALKLLNGMKRS 623
Query: 134 GKIPSRTLYDTLIKKL 149
P+ Y TLI L
Sbjct: 624 SIKPNLITYSTLIVGL 639
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A +V+ M + PNV T++ + +A + + +K G+ P+V
Sbjct: 395 CKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNV 454
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY V+DG K +++ +E + GV N ++++
Sbjct: 455 VTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVN------------------KFIVDSLV 496
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L GKI+KA L M E G + Y TLI L
Sbjct: 497 NGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGL 534
>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 638
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y N +A ++ M G+ PN T YT+L EA ++ + ++ + D
Sbjct: 298 YANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEAD 357
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
V TYTA++ GFCK G+ ++ +L++ I++G+ P+ +T +H +
Sbjct: 358 VVTYTALVSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELME 417
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ I + P +N VI+ C +G++ +A+ L M +G P + +I L Q
Sbjct: 418 KMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQ 476
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA+ V+ M + G+ P++ YT L +AY++L +++ G +P+
Sbjct: 263 WCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPN 322
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YT ++ CKV R E M++ E +VV T+ +
Sbjct: 323 ATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVV------------------TYTAL 364
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
+ C GKIDK L+L M + G +PS+ Y
Sbjct: 365 VSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTY 396
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,439,792,548
Number of Sequences: 23463169
Number of extensions: 95159852
Number of successful extensions: 299822
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3788
Number of HSP's successfully gapped in prelim test: 1398
Number of HSP's that attempted gapping in prelim test: 232578
Number of HSP's gapped (non-prelim): 32835
length of query: 153
length of database: 8,064,228,071
effective HSP length: 116
effective length of query: 37
effective length of database: 9,637,467,763
effective search space: 356586307231
effective search space used: 356586307231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)