BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047010
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
AV+ F VGRS EVM +L E+I +G+ P V
Sbjct: 414 AVIPAFA-VGRSQEVMIVLEESIRKGLIPEV 443
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126
N +E +A E P +V++ GHI ++ + N+ G GKID+A +L
Sbjct: 53 NAALEAQKKAAEATDVPKLVSVQQAIKFNGGGHINHSLFWKNLAPEKSGGGKIDQAPVL 111
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
F NG V A++M+ +K G++P + +Y + GFC+ G +++ E+
Sbjct: 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
>pdb|1ZCZ|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
pdb|1ZCZ|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
Length = 464
Score = 29.3 bits (64), Expect = 0.81, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIER-------GVTPNVVTLIHLHNVIDIGHIPRT 104
+ +T+V D R+N+ +E ++ A +R G P+ ++ +I H +T
Sbjct: 152 FAFTSVYDSI----RANQFVEGISLAFKREDLQLRYGENPHEKAFVYGKPAFEILHEGKT 207
Query: 105 ITFNNVIQA 113
I+FNN++ A
Sbjct: 208 ISFNNILDA 216
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 38/139 (27%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVK---------------ND 45
C CN+ ++ ++ D+G N+ I+ +E L+N+K N
Sbjct: 114 CLCNQKTIYDYEVIVA---DDGSKENIEE--IVREFESLLNIKYVRQKDYGYQLCAVRNL 168
Query: 46 GLKPDVYTYTAVMDGFCKVGRS----NEVMELLNEAIERGVT---PNVVTLIHLHNVID- 97
GL+ Y Y A++D C + + MELL A++ V P H +D
Sbjct: 169 GLRAAKYNYVAILD--CDMAPNPLWVQSYMELL--AVDDNVALIGPRKYIDTSKHTYLDF 224
Query: 98 ------IGHIPRTITFNNV 110
I IP IT N V
Sbjct: 225 LSQKSLINEIPEIITNNQV 243
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 38/139 (27%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVK---------------ND 45
C CN+ ++ ++ D+G N+ I+ +E L+N+K N
Sbjct: 113 CLCNQKTIYDYEVIVA---DDGSKENIEE--IVREFESLLNIKYVRQKDYGYQLCAVRNL 167
Query: 46 GLKPDVYTYTAVMDGFCKVGRS----NEVMELLNEAIERGVT---PNVVTLIHLHNVID- 97
GL+ Y Y A++D C + + MELL A++ V P H +D
Sbjct: 168 GLRAAKYNYVAILD--CDMAPNPLWVQSYMELL--AVDDNVALIGPRKYIDTSKHTYLDF 223
Query: 98 ------IGHIPRTITFNNV 110
I IP IT N V
Sbjct: 224 LSQKSLINEIPEIITNNQV 242
>pdb|3F4R|A Chain A, Crystal Structure Of Wolbachia Pipientis Alpha-Dsba1
Length = 226
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 17/124 (13%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDG 60
CY + D+F K + D+ + N++ T+L+ L N+K D + +MD
Sbjct: 97 CYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCI-NDKKIMDK 155
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHL--------HNVIDIGHIPRTITFNNVIQ 112
+S + +L G+T + I L HN + G F NVI
Sbjct: 156 IVN-DKSLAINKL-------GITATPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVID 207
Query: 113 ALCG 116
L G
Sbjct: 208 KLYG 211
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 19 FDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
F NG V A++ + K G++P + +Y + GFC+ G +++ E+
Sbjct: 108 FTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
C R NEV+ ++N A + G + VVT + + G T+ N
Sbjct: 121 CNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRN 167
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
C R NEV+ ++N A + G + VVT + + G T+ N
Sbjct: 121 CNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRN 167
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFN 108
C R NEV+ ++N A + G + VVT + + G T+ N
Sbjct: 121 CNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRN 167
>pdb|3F4S|A Chain A, Crystal Structure Of Wolbachia Pipientis Alpha-Dsba1 T172v
Length = 226
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL 47
CY + D+F K + D+ + N++ T+L+ L N+K D
Sbjct: 97 CYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAF 143
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTI----LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
FE +K + + G P VTT L+ Y M+ V+ LK D ++ GFC +
Sbjct: 28 FEIKKCDLHRLEEG--PPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHL 85
Query: 65 GRSNEVMELLNEAIERGVTP--NVVTLIHLHN 94
E + +E G+ P +++T H
Sbjct: 86 CDGQEACCV---GLEAGINPTDHLITAFRAHG 114
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
C G E+ ++LNE + GVT N + I L NV+
Sbjct: 200 CFDGTEEEMNQILNEGWDIGVTGNSLQSIELLNVM 234
>pdb|3F4T|A Chain A, Crystal Structure Of Wolbachia Pipientis Alpha-Dsba1
C97aC146A
Length = 226
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDG 60
Y + D+F K + D+ + N++ T+L+ L N+K D + +MD
Sbjct: 97 AYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQAI-NDKKIMDK 155
Query: 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHL--------HNVIDIGHIPRTITFNNVIQ 112
+S + +L G+T + I L HN + G F NVI
Sbjct: 156 IVN-DKSLAINKL-------GITATPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVID 207
Query: 113 ALCG 116
L G
Sbjct: 208 KLYG 211
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTI----LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
FE +K + + G P VTT L+ Y M+ V+ LK D ++ GFC +
Sbjct: 11 FEIKKCDLHRLEEG--PPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHL 68
Query: 65 GRSNEVMELLNEAIERGVTP--NVVTLIHLHN 94
E + +E G+ P +++T H
Sbjct: 69 CDGQEACCV---GLEAGINPTDHLITAYRAHG 97
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTI----LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
FE +K + + G P VTT L+ Y M+ V+ LK D ++ GFC +
Sbjct: 28 FEIKKCDLHRLEEG--PPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHL 85
Query: 65 GRSNEVMELLNEAIERGVTP--NVVTLIHLHN 94
E + +E G+ P +++T H
Sbjct: 86 CDGQEACCV---GLEAGINPTDHLITAYRAHG 114
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTI----LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
FE +K + + G P VTT L+ Y M+ V+ LK D ++ GFC +
Sbjct: 28 FEIKKCDLHRLEEG--PPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHL 85
Query: 65 GRSNEVMELLNEAIERGVTP--NVVTLIHLHN 94
E + +E G+ P +++T H
Sbjct: 86 CDGQEACCV---GLEAGINPTDHLITAYRAHG 114
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTI----LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
FE +K + + G P VTT L+ Y M+ V+ LK D ++ GFC +
Sbjct: 28 FEIKKCDLHRLEEG--PPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHL 85
Query: 65 GRSNEVMELLNEAIERGVTP--NVVTLIHLHN 94
E + +E G+ P +++T H
Sbjct: 86 CDGQEACCV---GLEAGINPTDHLITAYRAHG 114
>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|B Chain B, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|C Chain C, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|D Chain D, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
Length = 365
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 98 IGHIPRTITFNNVIQALC 115
+GH+P+ I FN + LC
Sbjct: 156 VGHLPKNIDFNEIAPVLC 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,803,866
Number of Sequences: 62578
Number of extensions: 189177
Number of successful extensions: 469
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 23
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)