BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047010
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ N +A + D + G+ PNV TYT L A E+ + +G +P+
Sbjct: 163 YCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------------HLHN 94
V TY A++ G C++GR + LL + ++R + PNV+T L+N
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282
Query: 95 V-IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V I + P T+ ++I LC G +D+A + +LM +G P+ +Y TLI
Sbjct: 283 VMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI 335
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EAR++ M NG +PN YT L + ++ + G+ + TYT ++
Sbjct: 311 EARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------------- 104
G+C VGR + E+ N+ R P++ T + L + G + +
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMD 430
Query: 105 ---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+T+ +IQ +C +GK++ A L ++ G P+ Y T+I
Sbjct: 431 INIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 476
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------HLHNV 95
G +PD+ T+T++++G+C R + + L ++ + G PNVVT HL++
Sbjct: 148 GFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHA 207
Query: 96 IDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+++ G P +T+N ++ LC +G+ A LL M + P+ + LI
Sbjct: 208 VELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALI 265
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+++ + M +P+V TY L EA +M ++ +G P+ YT ++
Sbjct: 276 EAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI 335
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNVI---DIGH-----------I 101
GFCK R + M++ E ++GV N +T LI + ++ D+
Sbjct: 336 HGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAP 395
Query: 102 PRTITFNNVIQALCGVGKIDKALLLL 127
P T+N ++ LC GK++KAL++
Sbjct: 396 PDIRTYNVLLDGLCCNGKVEKALMIF 421
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + +YM N+ TYTI+ +A+++ ++ + G+KP+V
Sbjct: 409 CCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNV 468
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
TYT ++ GFC+ G +E L + E G PN
Sbjct: 469 ITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
P + +T ++ K+ R + V+ L + G+ P + T ++H
Sbjct: 81 PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L ++ +G P +TF +++ C +I+ A+ L + G P+ Y TLI+ L
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCL 198
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ K EA +V+ M DNG+ P+V TY L +A +L ++K GL PD
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V +Y+ V+ GFC+ +E + + E +E+G+ P+ +T L
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
++ +G P T+ +I A C G ++KAL L M E G +P Y LI L++Q
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + D M G PNV TY L + +++L ++ GL+P+
Sbjct: 215 FCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPN 274
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+ +Y V++G C+ GR EV +L E RG + + VT L+
Sbjct: 275 LISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA 334
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ G P IT+ ++I ++C G +++A+ L M G P+ Y TL+ Q+
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + A + +D M G PN TYT L EAY +L + ++G P V
Sbjct: 356 CKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY A+++G C G+ + + +L + E+G++P+VV +++ V+
Sbjct: 416 VTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV------------------SYSTVL 457
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
C +D+AL + M E G P Y +LI+ +Q
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D EA +V M + G P+ TY+ L EA ++ + GL PD
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+TYTA+++ +C G + ++L NE +E+GV P+VV T++ +
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV------------------TYSVL 561
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I L + +A LL ++ +PS Y TLI+
Sbjct: 562 INGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + E V+ M GY + TY L +A M + GL P V
Sbjct: 286 CREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSV 345
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN---VVTLIH--------------LHN 94
TYT+++ CK G N ME L++ RG+ PN TL+ L
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ D G P +T+N +I C GK++ A+ +L M E G P Y T++
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 36/178 (20%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
+K + A V M ++ PNV TY IL A + ++ G P+V
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI---------------- 96
TY ++DG+CK+ + ++ +LL +G+ PN+++ +NV+
Sbjct: 242 TYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLIS----YNVVINGLCREGRMKEVSFV 297
Query: 97 -----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G+ +T+N +I+ C G +AL++ M HG PS Y +LI +
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSM 355
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
EA ++ ++ KPD Y ++ G C+ G + L E ++ G + VT+I L
Sbjct: 623 EADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALV 682
Query: 94 NVID-----------IGHIPRTITFNNVIQALCGV------GKIDKALLLLFLMYEHGKI 136
+ I H+ R+ + QA V G +D L +L M + G +
Sbjct: 683 KALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFL 742
Query: 137 P 137
P
Sbjct: 743 P 743
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 42/187 (22%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A +V+D M +P+V TYTIL A ++L +++ G PDV
Sbjct: 215 CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDV 274
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G CK GR +E ++ LN+ G PNV+T HN+I
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT----HNIILRSMCSTGRWMDAEK 330
Query: 97 ---DI---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---- 146
D+ G P +TFN +I LC G + +A+ +L M +HG P+ Y+ L+
Sbjct: 331 LLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFC 390
Query: 147 --KKLDQ 151
KK+D+
Sbjct: 391 KEKKMDR 397
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A + ++ M G +P++ TY + +A E+L + + G P
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ TY V+DG K G++ + ++LL+E + + P+ +T L H
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+G P +TFN+++ LC + D+A+ L M G P+ T Y LI+ L
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYT 53
+C +A K+++ + +G P+V TY ++ E L + + PDV T
Sbjct: 147 FCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVT 206
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVI 96
Y ++ C G+ + ME+L+ ++R P+V+T LI L +
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266
Query: 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D G P +T+N ++ +C G++D+A+ L M G P+ ++ +++ +
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K A +++ M +G PN +Y L A E L + + G PD+
Sbjct: 355 CRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDI 414
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY ++ CK G+ + +E+LN+ +G +P + IT+N VI
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL------------------ITYNTVI 456
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
L GK KA+ LL M P Y +L+ L ++
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
D +N V T + E ++ L N+ G PD+ T ++ GFC++G++ + ++L
Sbjct: 102 DVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILE 161
Query: 76 EAIERGVTPNVVTLIHLHNVIDIGHI------------------PRTITFNNVIQALCGV 117
G P+V+T +NV+ G+ P +T+N ++++LC
Sbjct: 162 ILEGSGAVPDVIT----YNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDS 217
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
GK+ +A+ +L M + P Y LI+
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIE 247
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PN T+ + A + L+ + N G KP+ +YT +++G G + E
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Query: 71 MELLNEAIERGV 82
+ELLNE +G+
Sbjct: 574 LELLNELCNKGL 585
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K + +A+ + M G N TYT+L + +EM ++ DG+ P++
Sbjct: 209 CKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
YTY VM+ CK GR+ + ++ +E ERGV+ N+VT L + V+D
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT+N +I CGVGK+ KAL L + G PS Y+ L+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA KV+D M +G +PN+ TY L +A + ++K+ GL P +
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY ++ GFC+ G ++ +++ E ERG+ P+ VT L +
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433
Query: 97 --DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++G +P T++ +I C G++++A L M E P+ +Y+T+I
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMI 485
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K D A K++ M + G P+ TYTIL +A ++ ++++ GL PD
Sbjct: 383 FCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPD 442
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+TY+ ++ GFC G+ NE L +E+ PN + +N +
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPN------------------EVIYNTM 484
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I C G +AL LL M E P+ Y +I+ L
Sbjct: 485 ILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVL 523
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
I +++++L+ + G P+V YT ++DG CK G + +L E + G+ N T
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238
Query: 92 LHNVI-----------------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L N + + G P T+N V+ LC G+ A + M E G
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERG 298
Query: 135 KIPSRTLYDTLIKKL 149
+ Y+TLI L
Sbjct: 299 VSCNIVTYNTLIGGL 313
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 28/142 (19%)
Query: 18 MFDNGYHPNVTTYTILEAYEM----------LMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67
M DNG+ P + L + + N + DVY++ ++ G C+ G
Sbjct: 120 MVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEI 179
Query: 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
+ +LL E E G +PNVV + +I C G+I+KA L
Sbjct: 180 EKSFDLLIELTEFGFSPNVV------------------IYTTLIDGCCKKGEIEKAKDLF 221
Query: 128 FLMYEHGKIPSRTLYDTLIKKL 149
F M + G + + Y LI L
Sbjct: 222 FEMGKLGLVANERTYTVLINGL 243
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C K EA ++ M + PN Y + A ++L ++ L P+
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI 101
V +Y +++ CK +S E L+ + I+ G+ P+ L + + H+
Sbjct: 513 VASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRAKNDSHV 563
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N +A ++D M + GY P++ Y + +A++ ++ G++P+
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
V TYTA+++G C R ++ LL++ I++ +TPNV+T L
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ + P +T++++I LC +ID+A + LM G + Y+TLI
Sbjct: 285 EMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLI 337
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + + +A +++ M PNV TY+ +LEA E+ + + PD+
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY+++++G C R +E ++ + + +G +VV ++N +I
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV------------------SYNTLI 337
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C +++ + L M + G + + Y+TLI+ Q
Sbjct: 338 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G++ D+YT+ V++ FC + + + +L + ++ G P+ VT+ L N
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
+++IG+ P + +N +I +LC +++ A + G P+ Y L+
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234
Query: 149 L 149
L
Sbjct: 235 L 235
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + +A + + M ++ TYT + EA+ + ++ GLKPD+
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDI 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
TYT +M G C G +EV L + + G+ N TL
Sbjct: 471 VTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 508
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + K+ M G N TY L +A E + G+ PD
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
++TY ++ G C G + + + + +R + ++V T+ V
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV------------------TYTTV 441
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I+ +C GK+++A L + G P Y T++ L
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F EA +D M D G PN+ TY L +A E+ N+++ G+KP
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----TLIHL-------------HN 94
YTY +D + K G S +E + +G+ PN+V +L L +
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYG 493
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ DIG +P ++T+N +++ VG+ID+A+ LL M E+G P + ++LI L
Sbjct: 494 LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTL 548
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY + EA K++ M +NG P+V L EA++M M +K LKP
Sbjct: 512 CYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
V TY ++ G K G+ E +EL +++G PN TITFN
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPN------------------TITFNT 613
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ LC ++ AL +LF M + G +P Y+T+I
Sbjct: 614 LFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTIL------EAYEMLMNVKNDGLKPD 50
Y D A + + M G PN+ + Y++ EA ++ +K+ GL PD
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
TY +M + KVG +E ++LL+E +E G P+V+ + L N +
Sbjct: 503 SVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFM 562
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ P +T+N ++ L GKI +A+ L M + G P+ ++TL
Sbjct: 563 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 30/154 (19%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
+EA+++ + M D G PN Y IL A + + +G++PD+ TY+
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
++D C VGR +E + E E G+ P+VV +N +I L
Sbjct: 967 LVDCLCMVGRVDEGLHYFKELKESGLNPDVV------------------CYNLIINGLGK 1008
Query: 117 VGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKKL 149
++++AL+L M G P Y++LI L
Sbjct: 1009 SHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +V M G+ P++ TY+ L +L ++ GLKP+VYT+T +
Sbjct: 206 EAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICI 265
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ G+ NE E+L + G P+VV T+ +I ALC
Sbjct: 266 RVLGRAGKINEAYEILKRMDDEGCGPDVV------------------TYTVLIDALCTAR 307
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
K+D A + M P R Y TL+ +
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFS 339
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 31/163 (19%)
Query: 3 CNKNDFFEARKVID-YMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPD 50
C N+ AR + + + D G P + TY +L A ++ + VK+ G PD
Sbjct: 760 CKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPD 819
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++D + K G+ +E+ EL E N TIT N V
Sbjct: 820 VATYNFLLDAYGKSGKIDELFELYKEMSTHECEAN------------------TITHNIV 861
Query: 111 IQALCGVGKIDKALLLLF-LMYEHGKIPSRTLYDTLIKKLDQQ 152
I L G +D AL L + LM + P+ Y LI L +
Sbjct: 862 ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKS 904
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C A++V + M + P+ TY T+L+ + + ++ DG PDV
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+T ++D CK G E + L+ ++G+ PN LH T+N +I
Sbjct: 364 VTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN------LH------------TYNTLI 405
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L V ++D AL L M G P+ Y I
Sbjct: 406 CGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 29/148 (19%)
Query: 16 DYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64
D M D + P TY L EA ++ + + G +P+ Y +++GF K
Sbjct: 880 DLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKA 939
Query: 65 GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
G ++ L ++ GV P++ T++ ++ LC VG++D+ L
Sbjct: 940 GEADAACALFKRMVKEGVRPDLK------------------TYSVLVDCLCMVGRVDEGL 981
Query: 125 LLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ E G P Y+ +I L +
Sbjct: 982 HYFKELKESGLNPDVVCYNLIINGLGKS 1009
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA ++ + M G PN T+ L A +ML + + G PDV+TY ++
Sbjct: 591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
G K G+ E M ++ +++ V P+ VTL L
Sbjct: 651 FGLVKNGQVKEAMCFFHQ-MKKLVYPDFVTLCTL 683
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P++ TY L EA ++ ++ GL+P+V+T+ A++ G+ G+
Sbjct: 1027 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1086
Query: 71 MELLNEAIERGVTPNVVTLIHLHN 94
+ + G +PN T L N
Sbjct: 1087 YAVYQTMVTGGFSPNTGTYEQLPN 1110
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----L 89
+A L ++ G + Y+Y ++ K E ME+ I G P++ T +
Sbjct: 171 QAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLM 230
Query: 90 IHLHNVIDI-------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ L DI G P TF I+ L GKI++A +L M + G
Sbjct: 231 VGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCG 290
Query: 137 PSRTLYDTLIKKL 149
P Y LI L
Sbjct: 291 PDVVTYTVLIDAL 303
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K EA +D M G P+ TY+IL EA + + K +G+ PDV
Sbjct: 564 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 623
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY+ ++DG CK R+ E E +E + + V PN T+ +N++I
Sbjct: 624 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN------------------TVVYNHLI 665
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+A C G++ AL L M G P+ Y +LIK +
Sbjct: 666 RAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 703
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 39/165 (23%)
Query: 2 YCN---KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKN 44
YC ++ + A V + + G P+ TT IL EA++++
Sbjct: 211 YCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--- 267
Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
G+ PDVY +T ++ FCK G+ E ++L ++ E GV PNVV
Sbjct: 268 -GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV----------------- 309
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TFN VI L G+ D+A + M E G P+ Y L+K L
Sbjct: 310 -TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGL 353
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 17 YMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
Y+F + + EA ++ ++ G+ P+V T+ V+DG GR +E +
Sbjct: 274 YLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEK 333
Query: 77 AIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
+ERG+ P ++T L + G P I +NN+I + G
Sbjct: 334 MVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGS 393
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA+ + LM G + + Y+TLIK
Sbjct: 394 LNKAIEIKDLMVSKGLSLTSSTYNTLIK 421
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++ + M G PN TYT L EA + ++ +GL+P+
Sbjct: 668 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 727
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V+ YTA++DG+ K+G+ +V LL E + V PN IT+ +
Sbjct: 728 VFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN------------------KITYTVM 769
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I G + +A LL M E G +P Y I
Sbjct: 770 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 805
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A E+ N G D T A++ G C+ G+ +E + E + RG
Sbjct: 501 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC----------- 549
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
V+D +++N +I CG K+D+A + L M + G P Y LI
Sbjct: 550 -VMD------RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 595
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+ M G+ PNV Y L +A E+ + + GL TY ++
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPN------VVTLIHLHNVID-----IGHI------ 101
G+CK G+++ LL E + G N V+ L+ H + D +G +
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
P +I LC GK KAL L F G
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 513
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65
M HPN TYT++ EA +L ++ G+ PD TY + G+ K G
Sbjct: 754 MHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQG 812
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N EA ++ D M G P++ TY+IL + + + + GL P+
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI---- 105
TY ++ GFC+ G+ N EL E + RGV P+VVT I L + D G + + +
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE 479
Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C K+D A L + + G P Y+ +I L
Sbjct: 480 KMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535
Score = 69.3 bits (168), Expect = 9e-12, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN + + K++ M P+V T++ +LEA E+ + G+ PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------------- 94
TY +++DGFCK +E ++ + + +G P++VT L N
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G IP TIT+N ++ C GK++ A L M G PS Y L+ L
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A + ++ G+K DV TY++++ G C G+ ++ ++L E I R + P+VVT L
Sbjct: 263 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 322
Query: 94 NV-----------------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+V I G P TIT+N++I C + +A + LM G
Sbjct: 323 DVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCE 382
Query: 137 PSRTLYDTLI 146
P Y LI
Sbjct: 383 PDIVTYSILI 392
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDV 51
C K EA +ID M + G+ P+ TY +L A ++ ++ +K V
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI--------------HLHN 94
Y+ V+D CK G ++ + L NE +G+ +VVT LI L
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLRE 305
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I IP +TF+ +I GK+ +A L M G P Y++LI
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
+L A+ +L G +PD T++ +++GFC GR +E + L++ +E P++VT+
Sbjct: 121 LLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTV-- 178
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I LC G++ +AL+L+ M E+G P Y ++ +L
Sbjct: 179 ----------------STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRL 220
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CYC K A V+ + GY P+ T++ L EA ++ + +P
Sbjct: 114 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 173
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLH 93
D+ T + +++G C GR +E + L++ +E G P+ VT + L
Sbjct: 174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233
Query: 94 NVIDIGHIPRTIT-FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +I ++ ++ VI +LC G D AL L M G Y +LI L
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI 90
+A+ + ++ + G+KPDV TY ++ G CK G +E L + E G TP+ T LI
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Query: 91 HLH 93
H
Sbjct: 568 RAH 570
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C C+ + +A VI M G+ P+ +TY+ + A+ + +K GL
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
DVYTYT ++D FCK G + + NE E G TPNVVT LIH
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
++ G +P +T++ +I C G+++KA + M +P +Y
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAY----------EMLMNVKNDGLKPD 50
+C +ARK + M + G PNV TYT L AY E+ + ++G P+
Sbjct: 528 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 587
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY+A++DG CK G+ + ++ P+V ++ D P +T+ +
Sbjct: 588 IVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD--MYFKQYDDNSERPNVVTYGAL 645
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ C ++++A LL M G P++ +YD LI L
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 20 DNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
DN PNV TY L EA ++L + +G +P+ Y A++DG CKVG+ +
Sbjct: 632 DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLD 691
Query: 69 EVMELLNEAIERGVTPNVVTLIH-----------------LHNVIDIGHIPRTITFNNVI 111
E E+ E E G + T L +++ P + + +I
Sbjct: 692 EAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMI 751
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC VGK D+A L+ +M E G P+ Y +I
Sbjct: 752 DGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 786
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A KV+ M +N PNV YT + EAY+++ ++ G +P+V TYTA++D
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVT 88
GF +G+ +ELL +GV PN VT
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVT 816
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EARK++D M G PN Y L EA E+ + G
Sbjct: 649 FCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 708
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
+YTY++++D + KV R + ++L++ +E PNVV + + +
Sbjct: 709 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 768
Query: 97 ---DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T+ +I +GKI+ L LL M G P+ Y LI
Sbjct: 769 MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 821
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----LIHL 92
E L V+ + PD YT ++ G C+ E M+ LN PNVVT L
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 93 HNVIDIGHIPRTIT-------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
N +G R + FN+++ A C G A LL M + G +P
Sbjct: 348 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 407
Query: 140 TLYDTLI 146
+Y+ LI
Sbjct: 408 VVYNILI 414
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 65/212 (30%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C K D EA K++ M + G PNV TYT I E+L + + G+ P
Sbjct: 755 CKVGKTD--EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAP 812
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNE--------------------------------- 76
+ TY ++D CK G + LL E
Sbjct: 813 NYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDE 872
Query: 77 ----------AIERGVTPNVVTLIHLHNVI----DIGHIPRTI-----TFNNVIQALCGV 117
++ R + N++ L + ++ T+ T+N++I++LC
Sbjct: 873 IGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLA 932
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
K++ A L M + G IP + +LIK L
Sbjct: 933 NKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 34/181 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F EA ++ M PNV TY+ L +L + +G P
Sbjct: 313 CEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSP 372
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHL- 92
+ +++ +C G + +LL + ++ G P V L+ L
Sbjct: 373 KIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLA 432
Query: 93 ----HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ G + I ++ + LC GK +KA ++ M G IP + Y ++
Sbjct: 433 EKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNY 492
Query: 149 L 149
L
Sbjct: 493 L 493
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 42/161 (26%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAY--------------EM-LMNVKND 45
+C F A + + + D + P+ +TY L +A+ EM L N++ D
Sbjct: 210 HCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMD 269
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G + Y+ CKVG+ E + TL+ N +P T+
Sbjct: 270 GFTLRCFAYS-----LCKVGKWREAL----------------TLVETENF-----VPDTV 303
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ +I LC ++A+ L M +P+ Y TL+
Sbjct: 304 FYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
+A+ V+ M + G P+V TY L A E+L +++N G KP+VY+YT +
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDI----------GH 100
+DGFCK+G+ +E +LNE G+ PN V L H + + G
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TFN++I LC V +I AL LL M G + + Y+TLI
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA V++ M +G PN + L EA E+ + G KPD
Sbjct: 434 FCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 493
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHIPRT----- 104
VYT+ +++ G C+V + LL + I GV N VT L N + G I
Sbjct: 494 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 553
Query: 105 -----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IT+N++I+ LC G++DKA L M G PS + LI L
Sbjct: 554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGL 609
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 25/170 (14%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N+ A ++ M +G PN Y L EA ++L + G PD
Sbjct: 227 FCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPD 286
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI-------- 101
T+ V+ G CK R NE +++N + RG P+ +T +L N + IG +
Sbjct: 287 AETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFY 346
Query: 102 ----PRTITFNNVIQALCGVGKIDKALLLLF-LMYEHGKIPSRTLYDTLI 146
P + FN +I G++D A +L ++ +G +P Y++LI
Sbjct: 347 RIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 29/161 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +AR + + M +G+ P+ + IL EA E + G PD+
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 634
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
T+ ++++G C+ GR + + + + G+ P+ T+TFN ++
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD------------------TVTFNTLM 676
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
LC G + A LLL E G +P+ + L++ + Q
Sbjct: 677 SWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQ 717
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH- 91
Y+ML + + P ++T+ VM FC V + + LL + + G PN V TLIH
Sbjct: 206 YDML----SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHS 261
Query: 92 -------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
L + +G +P TFN+VI LC +I++A ++ M G P
Sbjct: 262 LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPD 321
Query: 139 RTLYDTLIKKL 149
Y L+ L
Sbjct: 322 DITYGYLMNGL 332
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P TF V++A C V +ID AL LL M +HG +P+ +Y TLI L +
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSK 264
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 30/178 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ + + + D + + G P TY L EA E+ + G++P+
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPN 316
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VIDIGHI-- 101
VYTYT ++DG C VG++ E ++LLN IE+ PN VT + N V D I
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVE 376
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI--PSRTLYDTLIKKL 149
P IT+N ++ LC G +D+A LL+LM + P Y+ LI L
Sbjct: 377 LMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A ++ + M +G ++ T+ IL EA L +K GL+ D
Sbjct: 187 FCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEAD 246
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
+ YT+++ GFC G + L +E +ERG +P +T L
Sbjct: 247 LVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFE 306
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ G P T+ +I LCGVGK +AL LL LM E + P+ Y+ +I KL
Sbjct: 307 FMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKL 362
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
CY A V+ M G+ NV + IL +A +L ++ + L P
Sbjct: 116 CYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMP 175
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
DV++Y V+ GFC+ + +EL NE G + ++VT + L
Sbjct: 176 DVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFL 235
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +G + + ++I+ C G++D+ L + E G P Y+TLI+
Sbjct: 236 KEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A ++ + M + P+V ++ I+ A +L+ + GL PD+
Sbjct: 540 CKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDL 599
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+TY+ +++ F K+G +E + ++ ++ G P+
Sbjct: 600 FTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKP 49
C +A ++++ M P+ TY IL EA ++L + D P
Sbjct: 363 CKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDP 422
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTI--- 105
DV +Y A++ G CK R ++ +++ + +E+ G V T I L++ + G + + +
Sbjct: 423 DVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELW 482
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+ +I C G ++ A LL M PS Y+ L+ L
Sbjct: 483 KQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSL 539
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDV 51
C +N +A + D + + G VTT +L +A E+ + + + +
Sbjct: 435 CKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNS 494
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TYTA++DGFCK G N LL + + P+V +N ++
Sbjct: 495 DTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSV------------------FDYNCLL 536
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+LC G +D+A L M P ++ +I
Sbjct: 537 SSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMI 571
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
+A+ + ++ D PDV ++ ++DG K G LL G++P++ T L
Sbjct: 547 QAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLI 606
Query: 94 N-VIDIGHIPRTITF 107
N + +G++ I+F
Sbjct: 607 NRFLKLGYLDEAISF 621
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N F+A ++ M + G+ P+V Y + +A E+ ++ DG++ D
Sbjct: 149 FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRAD 208
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHI-------- 101
TY +++ G C GR ++ L+ + + R + PNV+T + +V + G
Sbjct: 209 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 268
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+N++I LC G++D+A +L LM G +P Y+TLI
Sbjct: 269 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLI 321
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 33/155 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ + M P+V TY L EA +ML + G PD
Sbjct: 254 FVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPD 313
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--------- 101
V TY +++GFCK R +E +L E +RG+ + +T +N I G+
Sbjct: 314 VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT----YNTIIQGYFQAGRPDAAQ 369
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLL 127
P T++ ++ LC +++KAL+L
Sbjct: 370 EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLF 404
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA++++D M G P+V TY L E ++ + GL D TY ++
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI------------ 105
G+ + GR + E+ + R PN+ T I L+ + + + +
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 413
Query: 106 ----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N VI +C +G ++ A L + G P Y T+I
Sbjct: 414 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMI 458
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 29/124 (23%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
PN+ TY+IL +A + N++ ++ D+ TY V+ G CK+G + +L
Sbjct: 379 PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDL 438
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+G+ P+VV ++ +I C + DK+ LL M E
Sbjct: 439 FRSLSCKGLKPDVV------------------SYTTMISGFCRKRQWDKSDLLYRKMQED 480
Query: 134 GKIP 137
G +P
Sbjct: 481 GLLP 484
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------V 95
G+ D+Y+Y V++ C+ R + ++ + ++ G P+VVT+ L N
Sbjct: 99 GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 158
Query: 96 IDI-------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
ID+ G P + +N +I C +G ++ A+ L M G Y++L+
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 218
Query: 149 L 149
L
Sbjct: 219 L 219
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA+K+ M + P V TYT L EA L +K+ G++P+V
Sbjct: 203 CRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNV 262
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TY+++MDG CK GRS + MEL + RG PN+V T+ +I
Sbjct: 263 FTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMV------------------TYTTLI 304
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
LC KI +A+ LL M G P LY +I
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVI 339
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 34/178 (19%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ + M G PN+ TYT L EA E+L + GLKPD
Sbjct: 273 CKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDI------------ 98
Y V+ GFC + + E L+E I G+TPN +T IH+ ++
Sbjct: 333 GLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRA 392
Query: 99 ----------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G T ++++ LC G+ KA+ L+ + G IPS+ + LI
Sbjct: 393 FTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLI 450
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-- 88
T+ ++ + + G PD YTY ++ G C+ GR +E +L E +E+ P VVT
Sbjct: 172 TVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYT 231
Query: 89 ---------------LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ +L + G P T+++++ LC G+ +A+ L +M
Sbjct: 232 SLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMAR 291
Query: 134 GKIPSRTLYDTLIKKLDQQ 152
G P+ Y TLI L ++
Sbjct: 292 GCRPNMVTYTTLITGLCKE 310
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 93 HNVIDIGHIPRTITFNNVIQALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N+ +IG P + N +I+ALC G +D L + M + G P Y TLI L
Sbjct: 145 KNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGL 202
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 29/176 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K++ +A V++ M + P+V TY L AY +L + + GL PD
Sbjct: 438 YC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH---- 100
+TYT+++D CK R E +L + ++GV PNVV L +D H
Sbjct: 497 QWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLE 556
Query: 101 -------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P ++TFN +I LC GK+ +A LL M + G P+ + LI +L
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRL 612
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA ++ M + G PN+ TYT+L +A E+L + GL P+V
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------IH-----LHNV 95
TY A+++G+CK G + ++++ R ++PN T +H L+ +
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKM 453
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +P +T+N++I C G D A LL LM + G +P + Y ++I L
Sbjct: 454 LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 29/165 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + M D+ P V TYT+L EA ++ ++ G+KP+++TYT ++
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDIGHI------- 101
D C + + ELL + +E+G+ PNV+T LI+ + + +D+ +
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T T+N +I+ C + KA+ +L M E +P Y++LI
Sbjct: 426 PNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLI 469
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 63/208 (30%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F A +++ M D G P+ TYT + EA ++ +++ G+ P+V
Sbjct: 473 CRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNV 532
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------------- 88
YTA++DG+CK G+ +E +L + + + PN +T
Sbjct: 533 VMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEK 592
Query: 89 ---------------LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGK 119
LIH ++ G P T+ IQ C G+
Sbjct: 593 MVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGR 652
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ A ++ M E+G P Y +LIK
Sbjct: 653 LLDAEDMMAKMRENGVSPDLFTYSSLIK 680
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYTYT 55
DF A M +G P+ TYT +L+A +M+ ++ +G+ PD++TY+
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYS 676
Query: 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDI------GHIPRTITFN 108
+++ G+ +G++N ++L + G P+ T + L +++++ G P +
Sbjct: 677 SLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMS 736
Query: 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
N+++ D + LL M EH P+ Y+ LI
Sbjct: 737 NMME-------FDTVVELLEKMVEHSVTPNAKSYEKLI 767
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 79/209 (37%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------- 33
YC + EA + + + + G P+ TYT L
Sbjct: 228 YCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRN 287
Query: 34 ------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
EA ++ + +K+D P V TYT ++ C R +E + L+
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347
Query: 76 EAIERGVTPNVVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVG 118
E E G+ PN+ T LI L +++ G +P IT+N +I C G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I+ A+ ++ LM P+ Y+ LIK
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIK 436
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + + M G P V+T TIL AY + + G KPD
Sbjct: 578 CADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDA 637
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+TYT + +C+ GR + +++ + E GV+P++ T++++I
Sbjct: 638 HTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL------------------FTYSSLI 679
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +G+ + A +L M + G PS+ + +LIK L
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 4 NKNDFFEAR-KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
NK++ FE + K+I ++ + + E ++ M + D + P++YTY +++G+C
Sbjct: 170 NKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYC 229
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HNVIDIGHIPRT-I 105
K+G E + +++ +E G+ P+ T L N + + R +
Sbjct: 230 KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEV 289
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++I LC +ID+A+ L M + P+ Y LIK L
Sbjct: 290 AYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 47/183 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC + +A ++ M +NG P++ TY+ L A+++L +++ G +P
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPS 706
Query: 51 VYTYTAVMDGFC--KVGRS----------------NEVMELLNEAIERGVTPNVVTLIHL 92
+T+ +++ K G+ + V+ELL + +E VTPN + L
Sbjct: 707 QHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKL 766
Query: 93 -HNVIDIGHI-----------------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+ ++G++ P + FN ++ C + K ++A ++ M G
Sbjct: 767 ILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVG 826
Query: 135 KIP 137
+P
Sbjct: 827 HLP 829
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI 101
+N+G+ P + A++ CK+ + NE +++++ I G P + + + + + G
Sbjct: 788 RNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEK 847
Query: 102 PR-TITFNNVIQALCG 116
R T F N++Q CG
Sbjct: 848 ERGTSVFQNLLQ--CG 861
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C++ A KV++ + + P V TYTIL EA +++ + + GLKPD+
Sbjct: 204 CSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI--------- 101
+TY ++ G CK G + E++ +G P+V++ I L +++ G
Sbjct: 264 FTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK 323
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T++ +I LC GKI++A+ LL LM E G P YD LI
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 375
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
N+ + E K++ MF PNV TY+IL EA +L +K GL PD Y
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112
+Y ++ FC+ GR + +E L I G P++V +N V+
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIV------------------NYNTVLA 411
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK D+AL + + E G P+ + Y+T+ L
Sbjct: 412 TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKNDGL---------KPDVY 52
C ++ E+ +++ M GY+P+V T +++ + L N+ +PDV+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHNV 95
Y A+++GFCK+ R ++ +L+ + +P+ VT L L+ +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ P IT+ +I+A G +D+AL L+ M G P Y+T+I+ + ++
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N +A +V+D M + P+ TY I+ A ++L + +D +P
Sbjct: 168 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPT 227
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TYT +++ G +E ++L++E + RG+ P++ T+N +
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM------------------FTYNTI 269
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
I+ +C G +D+A ++ + G P Y+ L++ L Q
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQ 311
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ + + G PN ++Y + A M++ + ++G+ PD
Sbjct: 414 CKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDE 473
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
TY +++ C+ G +E ELL + P+VVT +N V+
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT------------------YNIVL 515
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
C +I+ A+ +L M +G P+ T Y LI+ +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + EA +++ M +HP+V TY I+ +A +L ++ +G +P
Sbjct: 482 CLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRP 541
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79
+ TYT +++G G E MEL N+ +
Sbjct: 542 NETTYTVLIEGIGFAGYRAEAMELANDLVR 571
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL----------EAYEMLMNVKNDGLKPDV 51
C +A +V++ M NG P+ TY +IL EA L +++DG++PDV
Sbjct: 242 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDV 301
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
TY+ +MD CK GR E ++ + +RG+ P + T L+ +H ++D+
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P F+ +I A GK+D+A+L+ M + G P+ Y +I
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K E ++D M NG HP+ ++IL +A + ++ GL P+
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPN 405
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP-NVV--TLIH--------------LH 93
TY AV+ CK GR + M + I+ G++P N+V +LIH +
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 465
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D G TI FN++I + C G++ ++ L LM G P+ Y+TLI
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 32/147 (21%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND---GLKPDVYTYTAVMD 59
V+ M + G PNV +Y IL EA E+L + +D G PDV +YT V++
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
GF K G S++ +E ++RG+ P+VV T+N++I ALC
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVV------------------TYNSIIAALCKAQA 246
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLI 146
+DKA+ +L M ++G +P Y++++
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSIL 273
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + E+ K+ + M G PNV TY L EA ++L + + GLKP+
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
TY+ +++G+CK+ R + + L E GV+P+++T
Sbjct: 546 TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 31/162 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C CNK + A ++I M D G N + ++E+ ++ + G+KP
Sbjct: 452 CTCNK--WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V TY +++G+C G+ +E M+LL+ + G+ PN T+T++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN------------------TVTYST 551
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I C + +++ AL+L M G P Y+ +++ L Q
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 3 CNKNDFFEARKVIDYMFDN---GYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C++N EA +++ M D+ G P+V +YT + +AY + + G+
Sbjct: 169 CDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGIL 228
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------------- 91
PDV TY +++ CK ++ ME+LN ++ GV P+ +T ++H
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
L + G P +T++ ++ LC G+ +A + M + G P T Y TL++
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC EA K++ M G PN TY+ L +A + +++ G+ PD
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHN--------------- 94
+ TY ++ G + R+ EL E G + T I LH
Sbjct: 581 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQ 640
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY--------- 142
++D+ R TFN +I AL VG+ D+A L +G +P+ Y
Sbjct: 641 NLCLMDLKLEAR--TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 698
Query: 143 DTLIKKLDQ 151
L+++LDQ
Sbjct: 699 QGLLEELDQ 707
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 31/136 (22%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P++ TY IL + L NV G + D +T ++ G C R+++ M++
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144
Query: 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133
+ L + ++G IP ++N +++ LC + +AL LL +M +
Sbjct: 145 V-----------------LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187
Query: 134 ---GKIPSRTLYDTLI 146
G P Y T+I
Sbjct: 188 RGGGSPPDVVSYTTVI 203
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 30/177 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C K + +A ++++ M G+ P V TY + EAY + K+ ++
Sbjct: 598 CKCGKVN--KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHL 92
+V Y++++DGF KVGR +E +L E +++G+TPN+ T L+
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ ++ P +T+ +I LC V K +KA + M + G PS Y T+I L
Sbjct: 716 QSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+ R + + + + P+ +Y+IL E YE+ ++K G D Y V+
Sbjct: 535 KGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPR-------------- 103
DGFCK G+ N+ +LL E +G P VVT +VID + I R
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVT---YGSVIDGLAKIDRLDEAYMLFEEAKSK 651
Query: 104 -----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ ++++I VG+ID+A L+L + + G P+ +++L+ L
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDAL 702
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M + GY P V +T L A +L +K+ L D+ Y +D F KVG+
Sbjct: 194 MQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGK 253
Query: 67 SNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIG-----------HIPRTITFNN 109
+ + +E G+ P+ VT + N +D +P T +N
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I GK D+A LL G IPS Y+ ++
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 27/156 (17%)
Query: 21 NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69
NG P+ TYT + EA EM +++ + P Y Y ++ G+ G+ +E
Sbjct: 267 NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDE 326
Query: 70 VMELLNEAIERGVTPNVV------TLIHLHNVIDIG----------HIPRTITFNNVIQA 113
LL +G P+V+ T + +D P T+N +I
Sbjct: 327 AYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDM 386
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC GK+D A L M + G P+ + ++ +L
Sbjct: 387 LCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 29/152 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA +++ + G PN+ T+ L EA ++K P+ TY ++
Sbjct: 675 EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+G CKV + N+ E ++G+ P+ TI++ +I L G
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPS------------------TISYTTMISGLAKAG 776
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
I +A L +G +P Y+ +I+ L
Sbjct: 777 NIAEAGALFDRFKANGGVPDSACYNAMIEGLS 808
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 30/149 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA KV + M + PN++TY IL A+E+ +++ GL P+V T ++
Sbjct: 361 EALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMV 419
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
D CK + +E + E + TP+ ITF ++I L VG
Sbjct: 420 DRLCKSQKLDEACAMFEEMDYKVCTPD------------------EITFCSLIDGLGKVG 461
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++D A + M + + +Y +LIK
Sbjct: 462 RVDDAYKVYEKMLDSDCRTNSIVYTSLIK 490
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + F EA +++ G P+V Y + EA ++ +K D P+
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APN 376
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY ++D C+ G+ + EL + + G+ PNV T+ N +
Sbjct: 377 LSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTV------------------NIM 418
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+ LC K+D+A + M P + +LI L +
Sbjct: 419 VDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 29/145 (20%)
Query: 13 KVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+++ M G+ P+V T + E Y+++ ++ +P YT ++ F
Sbjct: 119 QILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAF 178
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
V S+ ++ L + E G P V HL F +I+ G++D
Sbjct: 179 SAVNHSDMMLTLFQQMQELGYEPTV----HL--------------FTTLIRGFAKEGRVD 220
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLI 146
AL LL M LY+ I
Sbjct: 221 SALSLLDEMKSSSLDADIVLYNVCI 245
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C F +A M G P+ +YT I EA + K +G PD
Sbjct: 738 CKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDS 797
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
Y A+++G R+ + L E RG+
Sbjct: 798 ACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 56/211 (26%), Positives = 81/211 (38%), Gaps = 63/211 (29%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC ++ A + M + G PNV TYT L AYE++ + ++G P+
Sbjct: 368 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 427
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------- 89
+YTY A +D CK R+ E ELLN+A G+ + VT
Sbjct: 428 IYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFC 487
Query: 90 ----------IHLHN---------------------VIDIGHIPRTITFNNVIQALCGVG 118
+ L+N V+ +G IP T+ ++I C G
Sbjct: 488 RMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEG 547
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
ID AL M HG +P Y +LI L
Sbjct: 548 DIDLALKYFHNMKRHGCVPDSFTYGSLISGL 578
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 29/179 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMN-VKNDGLKPD 50
C K +A ++++ M NG+ PNV T+T L +A+ + + V++D KP+
Sbjct: 298 CKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPN 357
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VTLIHLH-------------N 94
V+TYT+++ G+CK + N L + E+G+ PNV TLI+ H N
Sbjct: 358 VHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMN 417
Query: 95 VI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
++ D G +P T+N I +LC + +A LL + G Y LI++ +Q
Sbjct: 418 LMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQ 476
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + + M G+ P+ T T++ A + + G KP++ +T+++
Sbjct: 235 EADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLI 294
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT------------------LIHLHNVIDIGH 100
DG CK G + E+L E + G PNV T + L V +
Sbjct: 295 DGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTY 354
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P T+ ++I C K+++A +L M E G P+ Y TLI
Sbjct: 355 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 400
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + E+ ++ + G P TYT I A + N+K G PD
Sbjct: 508 FCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPD 567
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
+TY +++ G CK +E +L I+RG++P VT + L
Sbjct: 568 SFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTL 609
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 63/207 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C F A ++++ M D G+ PN+ TY EAYE+L + GL+ D
Sbjct: 403 HCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEAD 462
Query: 51 VYTYTAVMD-----------------------------------GFCKVGRSNEVMELLN 75
TYT ++ FC+ + E L
Sbjct: 463 GVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQ 522
Query: 76 EAIERGVTPNVVT-----------------LIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+ G+ P T L + HN+ G +P + T+ ++I LC
Sbjct: 523 LVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKS 582
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTL 145
+D+A L M + G P TL
Sbjct: 583 MVDEACKLYEAMIDRGLSPPEVTRVTL 609
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 29/150 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A V D M G P+ ++Y ++ EA L + G PD T T ++
Sbjct: 201 AENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILT 260
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
C+ G L+N AI + +ID+G P I F ++I LC G
Sbjct: 261 ALCENG-------LVNRAI-----------WYFRKMIDLGFKPNLINFTSLIDGLCKKGS 302
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
I +A +L M +G P+ + LI L
Sbjct: 303 IKQAFEMLEEMVRNGWKPNVYTHTALIDGL 332
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------V 86
EA M+M+++N GL P T V++ ++G + +E RGV P+ V
Sbjct: 165 EAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMV 224
Query: 87 VTLIH----------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+ L +I G IP T ++ ALC G +++A+ M + G
Sbjct: 225 IGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFK 284
Query: 137 PSRTLYDTLIKKL 149
P+ + +LI L
Sbjct: 285 PNLINFTSLIDGL 297
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F EA V+ M D G P++ +Y IL +A ++ +K +G+ PD TY
Sbjct: 342 FIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGC 401
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPR------------ 103
++ G+C VG+ + LL E + PN T I LH++ +G I
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKG 461
Query: 104 ----TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
T+T N ++ LCG G++DKA+ ++ M HG L ++ I +D
Sbjct: 462 YGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD 512
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ + AR++ D M + G PN T+ IL + E+L +++ G+ P+
Sbjct: 158 CDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNK 217
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI--- 101
Y ++ FC+ GR+++ +++ + E G+ P++VT L V+D I
Sbjct: 218 VIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSD 277
Query: 102 -----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +IT+N +++ C VG ++ A L + E+ + S Y+ ++ L
Sbjct: 278 MELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGL 336
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ P YT+ ++ C + EL +E E+G PN
Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPN------------------EF 183
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
TF +++ C G DK L LL M G +P++ +Y+T++
Sbjct: 184 TFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIV 224
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
V D + +N P++ TY+ L EA + + + L+PD Y + FC
Sbjct: 511 VDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFC 570
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVID----IGHIPRTI 105
K G+ + +L + ++G ++ T + +H ++D G P
Sbjct: 571 KQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNIC 630
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
T+N IQ LC K++ A LL M + P+ + LI+ + P
Sbjct: 631 TYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVP 678
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + A +V+ M G H ++ TY I E + ++ +K G+ P+
Sbjct: 569 FCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPN 628
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ TY + C+ + + LL+E +++ + PNV +F +
Sbjct: 629 ICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNV------------------FSFKYL 670
Query: 111 IQALCGVGKIDKA 123
I+A C V D A
Sbjct: 671 IEAFCKVPDFDMA 683
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 31/159 (19%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDVYT 53
KN FE ++D M + G PN+ TY + +A +L + + P+V++
Sbjct: 607 KNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFS 666
Query: 54 YTAVMDGFCKV---GRSNEVME---------------LLNEAIERGVTPNVVTLIHLHNV 95
+ +++ FCKV + EV E + NE + G L L V
Sbjct: 667 FKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATEL--LEAV 724
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
+D G T + +++++LC +++ A +L M + G
Sbjct: 725 LDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRG 763
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 16/167 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ A+ ++ M N PN T IL EA E+L + G D
Sbjct: 406 YCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLD 465
Query: 51 VYTYTAVMDGFCKVGRSNEVMEL-----LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
T ++DG C G ++ +E+ ++ + G N + ++I+ +P I
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLI 525
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
T++ ++ LC G+ +A L M P Y+ I +Q
Sbjct: 526 TYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQ 572
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF 107
KP VY Y +++ K R V L + + G+ P +T TF
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAP------------------QTYTF 150
Query: 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
N +I+ALC +D A L M E G P+ + L++
Sbjct: 151 NLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVR 190
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC K EA M D G + TYT+L +A E+ ++ G+ PD
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
V++Y +++GF K+G + + +E +E G+TPNV+ + L G I
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I C G + +A L M G +P +Y TL+
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ D A ++ M +G PNV YT L +A +L +K G+ PD+
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI 487
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHN 94
+ Y +++ G K R +E L E +E G+ PN T ++
Sbjct: 488 FCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE 547
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ + G +P + +I C GK+ +A M + G + Y L+ L
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 31/181 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A++++D M G HPN TY + EA+ + +K GL PD
Sbjct: 672 FCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
Query: 51 VYTYTAVMDGFCKVGRSNEVM------------------ELLNEAIERGVTPNVVTLIH- 91
+ YT ++DG C++ + L+N + G T +++
Sbjct: 732 SFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNR 791
Query: 92 -LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+ D P +T+N +I LC G ++ A L M +P+ Y +L+ D
Sbjct: 792 LMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD 851
Query: 151 Q 151
+
Sbjct: 852 K 852
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 13 KVIDYMFDNGYHPNVTTYTILEAY-----------EMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D FD PN TY I+ Y E+ ++N L P V TYT++++G+
Sbjct: 791 RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
K+GR E+ + +EAI G+ P+ I ++ +I A G
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPD------------------HIMYSVIINAFLKEGMTT 892
Query: 122 KALLLLFLMY 131
KAL+L+ M+
Sbjct: 893 KALVLVDQMF 902
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 29/175 (16%)
Query: 1 CYCNKNDFFE-ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK 48
C +K E A+ + D M +G P Y L + YE+L+ +K +
Sbjct: 355 CVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV 414
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------------- 91
YTY V+ G C G + ++ E I G PNVV TLI
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
L + + G P +N++I L ++D+A L M E+G P+ Y I
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
GL P Y ++++G+C+ + ELL E +R + +
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNI------------------VISPY 418
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
T+ V++ +C G +D A ++ M G P+ +Y TLIK Q
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 16 DYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN 75
D +F T + A ++ ++ GL P YTY ++DG CK+ R + LL
Sbjct: 242 DVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLV 301
Query: 76 EAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVIQALCGVG 118
E GV+ + T L H ++ G + ++ I + G
Sbjct: 302 EMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEG 361
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++KA L M G IP Y +LI+
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIE 390
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
N +DG K + T A++ GF KVG +++ + P+ T+I L N
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
+C + D A K M P+V TYT ++EA ++ + GL+PD
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
T+T +++G+CK G + + N I+ G +PNVVT LH
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ IG P T+N+++ LC G I++A+ L+ G Y TL+
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + M G P+ YT L A + + + + PDV
Sbjct: 327 CRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 386
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL----------------HN- 94
TYTA++ GFC++G E +L +E +G+ P+ VT L HN
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I G P +T+ +I LC G +D A LL M++ G P+ Y++++ L
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 501
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C + D A +++ M+ G PN+ TY I EA +++ + GL D
Sbjct: 467 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 526
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------IHLHNVIDIGH----- 100
TYT +MD +CK G ++ E+L E + +G+ P +VT LH +++ G
Sbjct: 527 VTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 586
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P TFN++++ C + A + M G P Y+ L+K
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVK 639
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKPD 50
YC + + K+I+ M G PN Y + EA E + G+ PD
Sbjct: 291 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPD 350
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI-- 101
YT ++DGFCK G + E R +TP+V+T + ++++ G +
Sbjct: 351 TVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFH 410
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P ++TF +I C G + A + M + G P+ Y TLI L ++
Sbjct: 411 EMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 469
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN------ 85
I EA+ +L+ ++ G PDV +Y+ V++G+C+ G ++V +L+ +G+ PN
Sbjct: 262 IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 321
Query: 86 VVTLI-----------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
++ L+ +I G +P T+ + +I C G I A + M+
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381
Query: 135 KIPSRTLYDTLIKKLDQ 151
P Y +I Q
Sbjct: 382 ITPDVLTYTAIISGFCQ 398
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 10 EARKVIDYMFDNGYHPNVTT------------YTILEAYEMLMNVKNDGLKPDVYTYTAV 57
EAR+V + M + G +V + Y A + G+ +V +Y V
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117
+ C++GR E LL +G TP+V I+++ V+ C
Sbjct: 253 IHFVCQLGRIKEAHHLLLLMELKGYTPDV------------------ISYSTVVNGYCRF 294
Query: 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++DK L+ +M G P+ +Y ++I
Sbjct: 295 GELDKVWKLIEVMKRKGLKPNSYIYGSII 323
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVK----------NDGLKPD 50
+C + K++++M G PN TT+ ++++ Y + N+K + G+ PD
Sbjct: 571 FCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPD 630
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR 103
TY ++ G CK E L E +G + +V T ++V+ G + R
Sbjct: 631 GKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST----YSVLIKGFLKR 679
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +N+ A + M G P+ TY L EA+ + +K G
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
V TY+ ++ GF K + E E+ ++ G+ + + G P TI
Sbjct: 666 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTI 720
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA + M G+ +V+TY++L EA E+ ++ +GL D
Sbjct: 641 HCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIE 79
+ D K R + +++ ++E IE
Sbjct: 701 KEIFDFFSDTKYKGKRPDTIVDPIDEIIE 729
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + F EA + M + G P+ TY T++ Y ++ + +G PD
Sbjct: 297 CKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQ 356
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
+TY +++DG C G +N + L NEA+ +G+ PNV+ TLI +
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANE 416
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ + G IP TFN ++ LC +G + A L+ +M G P ++ LI Q
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQ 474
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A ++ M GY P++ T+ IL A E+L + ++G+ PDV
Sbjct: 437 CKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDV 496
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
YTY ++++G CK + +VME +E+G PN+ TFN ++
Sbjct: 497 YTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNL------------------FTFNILL 538
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++LC K+D+AL LL M P + TLI
Sbjct: 539 ESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLI 573
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D E K++D + G PN+ TY + A M+ + G KPDV
Sbjct: 227 CKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDV 286
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------------LIHLH-----N 94
TY ++ G CK + E L + + G+ P+ T ++ L +
Sbjct: 287 ITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGD 346
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ G +P T+ ++I LC G+ ++AL L G P+ LY+TLIK L Q
Sbjct: 347 AVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQ 404
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C++ + A + + G PNV Y ILEA ++ + GL P+V
Sbjct: 367 CHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEV 426
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI--- 98
T+ +++G CK+G ++ L+ I +G P++ T LIH + N ++I
Sbjct: 427 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 486
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G P T+N+++ LC K + + M E G P+ ++ L++ L
Sbjct: 487 MLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 9 FEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68
F ++ + D+GY +A+++ M +++ G+ PDVY++T M FCK R +
Sbjct: 112 FSYNAIMSVLVDSGYFD--------QAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPH 163
Query: 69 EVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTITFNNVI 111
+ LLN +G NVV + ++ G TFN ++
Sbjct: 164 AALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLL 223
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ LC G + + LL + + G +P+ Y+ I+ L Q+
Sbjct: 224 RVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQR 264
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
F +A KV M D G P+V ++TI A +L N+ + G + +V Y
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCT 186
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIG 99
V+ GF + E EL + + GV+ + T L VI G
Sbjct: 187 VVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG 246
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P T+N IQ LC G++D A+ ++ + E G P Y+ LI L
Sbjct: 247 VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGL 296
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + F + + M + G PN+ T+ IL EA +L +KN + PD
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE----RGVTPNVVTLIH--------------LH 93
T+ ++DGFCK G + L + E TP +IH
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQ 626
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++D P T+ ++ C G ++ L M E+G IPS T +I
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVI 679
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + A ++ + + L PD YTY ++DGFCK G N + L E +E G
Sbjct: 610 HAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFI 669
Query: 84 PNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138
P++ TL VI LC ++ +A ++ M + G +P
Sbjct: 670 PSLTTL------------------GRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +F AR M NG TYT + EA +L + DG+ PD+
Sbjct: 379 CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH-------LHNVIDI--- 98
TY+A+++GFCKVGR E++ G++PN + TLI+ L I I
Sbjct: 439 VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 498
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GH TFN ++ +LC GK+ +A + M G +P+ +D LI
Sbjct: 499 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPDV 51
C + F ++ ++ M +GY P + TY T+L Y E+L ++K+ G+ DV
Sbjct: 204 CAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADV 263
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHN 94
TY ++ C+ R + LL + +R + PN V TLI+ L+
Sbjct: 264 CTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNE 323
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P +TFN +I G +AL + ++M G PS Y L+ L
Sbjct: 324 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
P+V T+ IL ++ ++ ++ G P + TY V+ +CK GR +EL
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250
Query: 74 LNEAIERGVTPNVVT---LIH---LHNVIDIGHI-----------PRTITFNNVIQALCG 116
L+ +GV +V T LIH N I G++ P +T+N +I
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
GK+ A LL M G P+ ++ LI
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------- 96
G P VYT A++ K G V L E ++R + P+V T L NV+
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212
Query: 97 --------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
G+ P +T+N V+ C G+ A+ LL M G Y+ LI
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272
Query: 149 L 149
L
Sbjct: 273 L 273
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTL----------------IH 91
PD YTYT+++ G C+ G++ + EA RG V PN V I+
Sbjct: 646 PDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIY 705
Query: 92 LHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D +GH P +T N +I +GKI+K LL M P+ T Y+ L+
Sbjct: 706 FREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILL 761
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C F A++++ ++ G PN Y+ L EA + + +G D
Sbjct: 448 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+T+ ++ CK G+ E E + G+ PN V+ L N
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +GH P T+ ++++ LC G + +A L ++ +Y+TL+ +
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 623
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ N+ A ++++ M G PN T+ L EA +M ++ GL P
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLH 93
+Y ++DG CK + GV +T ++ L+
Sbjct: 368 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLN 427
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ G P +T++ +I C VG+ A ++ +Y G P+ +Y TLI
Sbjct: 428 EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E+ +L + G+ P+ Y +++G C+VG + E I + P
Sbjct: 877 ESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICP--------P 928
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
NV + + +++AL GK D+A LLL M + +P+ + TL+
Sbjct: 929 NVAE----------SAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 971
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C K D EA ++ +M P + ++T ++EA E+ + + N GLK D+
Sbjct: 942 CGKAD--EATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 999
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+Y ++ G C G EL E G N T + + G + R F+
Sbjct: 1000 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATT----YKALIRGLLARETAFSGA 1054
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------- 91
N G PD+ T A++DG+ ++G+ + +LL E + PN+ T L+H
Sbjct: 712 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 771
Query: 92 -----LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++I G +P +T ++++ +C ++ L +L G R ++ LI
Sbjct: 772 TSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLI 831
Query: 147 KK 148
K
Sbjct: 832 SK 833
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 29/175 (16%)
Query: 4 NKNDFF-EARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
N+N F E+R V+ M G P Y I A+ + + + P
Sbjct: 870 NRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN 929
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHL----HNVIDI------ 98
+A++ K G+++E LL ++ + P + TL+HL NVI+
Sbjct: 930 VAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVV 989
Query: 99 ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G +++N +I LC G + A L M G + + T Y LI+ L
Sbjct: 990 MSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1044
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 28/158 (17%)
Query: 22 GYHPN-VTTYTILEAY----------EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G+ P+ VTT +++ Y ++L + N P++ TY ++ G+ K +
Sbjct: 714 GHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTS 773
Query: 71 MELLNEAIERGVTPNVVTLIHL------HNVIDIG------HIPRTI-----TFNNVIQA 113
L I G+ P+ +T L N+++IG I R + TFN +I
Sbjct: 774 FLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISK 833
Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
C G+I+ A L+ +M G + D ++ L++
Sbjct: 834 CCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSN------EVMELLNEAIERGVTPNVVTLIH-------- 91
G++ D YT+ ++ C G N +VM L ++++ +V++++
Sbjct: 819 GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 878
Query: 92 ---LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
LH + G P + + +I LC VG I A ++ M H P +++
Sbjct: 879 RMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRA 938
Query: 149 LDQ 151
L +
Sbjct: 939 LAK 941
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 29/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y + D A++V++ M D G++P+ TTYT+L EA ++ +++ + ++P+
Sbjct: 236 YVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN 295
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN-------VVTLIHLHNVIDIGHIPR 103
TY ++ CK +S E + +E +ER P+ + L H V + + R
Sbjct: 296 EVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWR 355
Query: 104 TITFNN----------VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ NN +I LC G++ +A LF +E G IPS Y+TLI
Sbjct: 356 KMLKNNCMPDNALLSTLIHWLCKEGRVTEA-RKLFDEFEKGSIPSLLTYNTLI 407
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C KND A KV+D + G PN+ TYT + A +L + + G PD
Sbjct: 202 CKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDA 261
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHN 94
TYT +MDG+CK+GR +E ++++ + + PN VT +I
Sbjct: 262 TTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDE 321
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+++ +P + VI ALC K+D+A L M ++ +P L TLI L
Sbjct: 322 MLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWL 376
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EARK+ D F+ G P++ TY L EA + ++ KP+
Sbjct: 377 CKEGRVTEARKLFD-EFEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNA 435
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRTITFNNV 110
+TY +++G K G E + +L E +E G PN T LI + +G + +
Sbjct: 436 FTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAM---KI 492
Query: 111 IQALCGVGKIDKALLLLFL 129
+ GK+DK LFL
Sbjct: 493 VSMAVMNGKVDKESWELFL 511
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 18/132 (13%)
Query: 36 YEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH--- 91
+ M N K G+ P+++T ++ CK ++L+E G+ PN+VT
Sbjct: 175 HAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILG 234
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L ++D G P T+ ++ C +G+ +A ++ M ++ P
Sbjct: 235 GYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEP 294
Query: 138 SRTLYDTLIKKL 149
+ Y +I+ L
Sbjct: 295 NEVTYGVMIRAL 306
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
+C+ N F+EA ++D + GY PNV Y TI++ A ++L ++K G++PD
Sbjct: 159 FCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPD 218
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV--------------- 95
V TY +++ G +L++ + G++P+V+T L +V
Sbjct: 219 VVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYN 278
Query: 96 --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
I P +T+N++I LC G +D+A +L ++ G P+ Y+TLI
Sbjct: 279 EMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLI 331
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K A V+ +M G P+V TY L + +L ++ G+ PDV
Sbjct: 195 CEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDV 254
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--------LIH---------LHN 94
T++A++D + K G+ E + NE I+R V PN+VT IH L+
Sbjct: 255 ITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNV 314
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
++ G P +T+N +I C ++D + +L +M G Y+TL
Sbjct: 315 LVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTL 365
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA+KV++ + G+ PN TY L + ++L + DG+ D +TY +
Sbjct: 307 EAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLY 366
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------------- 104
G+C+ G+ + ++L + GV P++ T I L + D G I +
Sbjct: 367 QGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTV 426
Query: 105 ---ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
IT+N +I+ LC K++ A L + G P Y T++ L ++
Sbjct: 427 VGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRK 477
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ D+Y++T ++D FC+ R + + L + ++ G P++VT L N
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +G+ P + +N +I +LC G+++ AL +L M + G P Y++LI +
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITR 228
Query: 149 L 149
L
Sbjct: 229 L 229
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC F A KV+ M G HP++ T+ IL +A L +++
Sbjct: 369 YCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVG 428
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
+ TY ++ G CK + + L +GV+P+V+T I
Sbjct: 429 IITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYI 468
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 3 CNKNDFFEARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
C D + +D M D+ P++ ++TIL EA ++ + N G KPD
Sbjct: 205 CKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPD 264
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
+ Y +M GFC + + +E + + + E GV P+ +T ++L
Sbjct: 265 CFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLK 324
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++D G+ P T T+ +++ +C G+ AL LL M G P+ Y+TL+ L
Sbjct: 325 TMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGL 380
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + EA V M + G P+ TY L EA L + + G +PD
Sbjct: 275 FCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPD 334
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TYT++M+G C+ G S + LL E RG PN T+N +
Sbjct: 335 TATYTSLMNGMCRKGESLGALSLLEEMEARGCAPN------------------DCTYNTL 376
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LC +DK + L +M G Y TL++ L
Sbjct: 377 LHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSL 415
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 31 TILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-- 88
+I + +L + N+GL+PD T + C+ GR +E +L+ E E+ P+ T
Sbjct: 139 SISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYN 198
Query: 89 --LIHLHNVIDIGHI---------------PRTITFNNVIQALCGVGKIDKALLLLFLMY 131
L HL D+ H+ P ++F +I +C + +A+ L+ +
Sbjct: 199 FLLKHLCKCKDL-HVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLG 257
Query: 132 EHGKIPSRTLYDTLIK 147
G P LY+T++K
Sbjct: 258 NAGFKPDCFLYNTIMK 273
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 88 TLIHLHNVIDI----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
++ ++H V+++ G P +T + +++LC G++D+A L+ + E P Y+
Sbjct: 139 SISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYN 198
Query: 144 TLIKKL 149
L+K L
Sbjct: 199 FLLKHL 204
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 35/157 (22%)
Query: 8 FFEARK------VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
FF+AR V M G HPN+ TY IL +A + ++ ++PD
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 502
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY +++G CK G+ + EL +GV+PNV I +N +
Sbjct: 503 IYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNV------------------IAYNTM 544
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I C G ++A LL M E G +P+ Y+TLI+
Sbjct: 545 ISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIR 581
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA M + + P+
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY+ ++ GFCK R E MEL E +RG+ N V TLIH
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 457
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +T+N ++ LC GK+ KA+++ + P Y+ +I+ +
Sbjct: 458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + + N G++PDV+TY++++ C GR ++ LL++ IER + PNVVT L
Sbjct: 276 DALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 335
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+I P T++++I C ++D+A + LM
Sbjct: 336 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 395
Query: 137 PSRTLYDTLIK 147
P+ Y TLIK
Sbjct: 396 PNVVTYSTLIK 406
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 31/161 (19%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A V+ M GY P++ T + L +A ++ + G KP
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D +T+T ++ G +++E + L+++ ++RG P++V T+
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV------------------TYGT 228
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIKKL 149
V+ LC G ID AL LL M E GKI + +Y+T+I L
Sbjct: 229 VVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIIDGL 268
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN + +A +++ M + +PNV T++ L EA ++ + + P
Sbjct: 302 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 361
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++TY+++++GFC R +E + I + PNVV T++
Sbjct: 362 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV------------------TYST 403
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I+ C ++++ + L M + G + + Y TLI
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPDVYTY 54
N EA ++D M G P++ TY T++ A +L ++ ++ DV Y
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 261
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114
++DG CK ++ + L E +G+ P+V T++++I L
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNKGIRPDV------------------FTYSSLISCL 303
Query: 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
C G+ A LL M E P+ + LI
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALI 335
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ D+YTY+ ++ FC+ + + + +L + ++ G P++VTL L N
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G+ P T TF +I L K +A+ L+ M + G P Y T++
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232
Query: 149 L 149
L
Sbjct: 233 L 233
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV Y + EA +L +K DG P+ TY ++ + G
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
EL+ E G + T+ + N++ G + ++
Sbjct: 593 AELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKS 626
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 28/157 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YCN +A + + +G P++TT TIL +A + N+K +GLK D
Sbjct: 418 YCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLD 477
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LH 93
V TY +M G+ K + N+V EL++E G++P+V T LIH +
Sbjct: 478 VVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIIS 537
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+I G +P T+ F +VI G +A +L F M
Sbjct: 538 ELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYM 574
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54
N FE +ID M G P+V TY IL EA E++ + G P +
Sbjct: 495 NKVFE---LIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAF 551
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
T V+ GF K G E L + + P+VVT L+H + ++D
Sbjct: 552 TDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLD 611
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
G P + +N +I C VG I+KA L+ LM + G +P+ + + L+ L+
Sbjct: 612 AGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLE 664
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 66/199 (33%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA--- 56
AR+ +++M G H N ++ + +E+LM +K+ G++PD+ +T
Sbjct: 255 AREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFID 314
Query: 57 --------------------------------VMDGFCKVGRSNEVMELLNEAIERGVTP 84
V+DGFCKVG+ E ++L++ R P
Sbjct: 315 KLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLR---P 371
Query: 85 NVVTLIH-----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
N+ + ++G +P + + +I C +G+ DKA
Sbjct: 372 NIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYF 431
Query: 128 FLMYEHGKIPSRTLYDTLI 146
+ + G PS T LI
Sbjct: 432 GALLKSGNPPSLTTSTILI 450
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + DF EA + YM D P+V T + L +A + + + GLKPD
Sbjct: 558 FSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPD 617
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
V Y ++ G+C VG + EL+ ++RG+ PN T
Sbjct: 618 VVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNEST 655
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 27/144 (18%)
Query: 28 TTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
+T +L A + + GL PD YT ++DG+C +GR+++ + ++ G P++
Sbjct: 385 STGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLT 444
Query: 88 TLIHLHNVIDIGHIPR----------------------TITFNNVIQALCGVGKIDKALL 125
T + I IG R +T+NN++ +++K
Sbjct: 445 T-----STILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFE 499
Query: 126 LLFLMYEHGKIPSRTLYDTLIKKL 149
L+ M G P Y+ LI +
Sbjct: 500 LIDEMRSAGISPDVATYNILIHSM 523
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 30/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + A+K++D+M NG +PNV Y+ L EA + VK GLK D
Sbjct: 278 FCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLD 337
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNE--------------AIERGVTPNVVTLIHLHNVI 96
YT +M+ FC+ G ++E M+LL E I RG++ + L +
Sbjct: 338 TVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLD 397
Query: 97 DIG----HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G H+ + ++ ++ ALC G+++KA+ L +M E G P ++ L+ +L
Sbjct: 398 QWGSEGVHLNKG-SYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRL 453
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 32/150 (21%)
Query: 11 ARKVIDYMFDN-GYHPNVTTYTILE-----------AYEMLMNVKNDGLK-PDVYTYTAV 57
+RK++ Y N G PN + IL A+ ++ +K G+ P+ TY+ +
Sbjct: 179 SRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTL 238
Query: 58 MDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116
MD RS E +EL + I + G++P+ +TFN +I C
Sbjct: 239 MDCLFAHSRSKEAVELFEDMISKEGISPD------------------PVTFNVMINGFCR 280
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G++++A +L M ++G P+ Y L+
Sbjct: 281 AGEVERAKKILDFMKKNGCNPNVYNYSALM 310
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 69.3 bits (168), Expect = 8e-12, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A +++ M + GYH N Y++L EA + + G KP++ Y+ ++
Sbjct: 345 DAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLV 404
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
DG C+ G+ NE E+LN I G PN T L + G
Sbjct: 405 DGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCS 464
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +I LCGVG++ +A+++ M G P Y ++IK L
Sbjct: 465 RNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGL 512
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNV 95
PD YTY +MDG CK R +E + LL+E G +P+ V L + +
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKL 279
Query: 96 ID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+D G +P +T+N +I LC GK+DKA+ LL M IP+ Y TLI L +
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339
Query: 152 Q 152
Q
Sbjct: 340 Q 340
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA+++++ M +G PN TY+ L EA ++ + G +
Sbjct: 408 CREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNK 467
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDIGHI--------- 101
+ Y+ ++DG C VGR E M + ++ + G+ P+ V + + IG +
Sbjct: 468 FCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHE 527
Query: 102 ----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N ++ LC I +A+ LL M + G P +T + L +
Sbjct: 528 MLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSE 587
Query: 152 Q 152
+
Sbjct: 588 K 588
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 36/177 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C K D K++D MF G PN TY L +A +L + + P+
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
TY +++G K R+ + + LL+ ERG N H+++V+
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ----HIYSVLISGLFKEGKAEEAMS 383
Query: 97 ------DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P + ++ ++ LC GK ++A +L M G +P+ Y +L+K
Sbjct: 384 LWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMK 440
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P ++FN VI+ALC + +D+A+ + M E +P Y TL+ L
Sbjct: 185 PNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGL 232
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 69.3 bits (168), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN + + K++ M PNV T+++L EA ++L + G+ P+
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +++DGFCK R E +++++ I +G P++ +TFN +
Sbjct: 368 TITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDI------------------MTFNIL 409
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I C +ID L L M G I + Y+TL++ Q
Sbjct: 410 INGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH 91
A+ + ++ G K D+ TY ++ GFC GR ++ +LL + I+R ++PNVVT LI
Sbjct: 282 AFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLID 341
Query: 92 --------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
L ++ G P TIT+N++I C ++++A+ ++ LM G P
Sbjct: 342 SFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDP 401
Query: 138 SRTLYDTLI 146
++ LI
Sbjct: 402 DIMTFNILI 410
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
A+ + + G +PD + +++G C R +E +EL++ +E
Sbjct: 142 AFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE--------------- 186
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
+GH P IT N ++ LC GK+ A++L+ M E G P+ Y
Sbjct: 187 ---MGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C A + + GY P+ + L EA E++ + G KP
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIP------ 102
+ T +++G C G+ ++ + L++ +E G PN VT + NV+ G
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251
Query: 103 ----------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ +I LC G +D A L M G Y+TLI
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 63/209 (30%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-------------- 47
+C +N EA +++D M G P++ T+ IL N +DGL
Sbjct: 378 FCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN 437
Query: 48 --------------------------------KPDVYTYTAVMDGFCKVGRSNEVMELLN 75
+PD+ +Y ++DG C G + +E+
Sbjct: 438 TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFG 497
Query: 76 EAIERGVTPNV-VTLIHLHNVIDIGHIPRTI----------------TFNNVIQALCGVG 118
+ + + ++ + +I +H + + + +N +I LC
Sbjct: 498 KIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKD 557
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ KA +L M E G P Y+ LI+
Sbjct: 558 SLSKADILFRKMTEEGHAPDELTYNILIR 586
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 36 YEMLM----NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH 91
YE+++ +++ G+ +YT + +++ FC+ + + + +
Sbjct: 104 YELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGK--------------- 148
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G+ P T+ FN ++ LC ++ +AL L+ M E G P+ +TL+ L
Sbjct: 149 ---IMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGL 203
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 28/143 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C A+K+ M P++ +Y IL +A E+ ++ ++ D
Sbjct: 448 FCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLH 93
+ Y ++ G C + ++ +L +GV + I
Sbjct: 508 IGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFR 567
Query: 94 NVIDIGHIPRTITFNNVIQALCG 116
+ + GH P +T+N +I+A G
Sbjct: 568 KMTEEGHAPDELTYNILIRAHLG 590
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C +N +A +++D M G PN+ T+ IL + E+ + G+ D
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 437
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TY ++ GFC++G+ N EL E + R V PN+VT I L + D G + +
Sbjct: 438 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE 497
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+N +I +C K+D A L + G P Y+ +I L
Sbjct: 498 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+CN + + K++ M +PNV T+++L EA E+ + + G+ PD
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 367
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVID------- 97
TYT+++DGFCK ++ ++++ + +G PN+ T L N ID
Sbjct: 368 TITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 427
Query: 98 ----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + T+T+N +IQ C +GK++ A L M P+ Y L+ L
Sbjct: 428 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 483
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI---- 90
A+ + ++ G+ ++ TY ++ GFC GR ++ +LL + I+R + PNVVT
Sbjct: 282 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 341
Query: 91 ------------HLHN-VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
LH +I G P TIT+ ++I C +DKA ++ LM G P
Sbjct: 342 SFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 138 SRTLYDTLI 146
+ ++ LI
Sbjct: 402 NIRTFNILI 410
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 28/174 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C A + + GY PN T++ L EA E++ + G KP
Sbjct: 132 CFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 191
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIP------ 102
D+ T +++G C G+ E M L+++ +E G PN VT + NV+ G
Sbjct: 192 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 251
Query: 103 ----------RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ ++ +I LC G +D A L M G + Y+ LI
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI 305
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------- 94
P V ++ + K + + V+ L + +G+ N+ TL + N
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I +G+ P TITF+ +I LC G++ +AL L+ M E G P +TL+ L
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 24 HPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83
H + +A+++ ++ G+KP V TY ++ G CK G +E ELL +E
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA-ELLFRKMEED-- 572
Query: 84 PNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
GH P T+N +I+A G G K++ L+
Sbjct: 573 ---------------GHAPDGWTYNILIRAHLGDGDATKSVKLI 601
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + +A + + G P V TY I+ EA + ++ DG PD
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDG 578
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
+TY ++ G + + ++L+ E G + + T+ + +++ G + ++
Sbjct: 579 WTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRLKKS 631
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y D A V M G PNV TYTIL EA+ M + G++P
Sbjct: 366 YVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPS 425
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------IHLH----NV 95
+ TY++++DGFCK G L + I+ G P+VV + LH +V
Sbjct: 426 IVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSV 485
Query: 96 IDIGHIPR--TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+G R + FN++I C + + D+AL + LM +G P + T+++
Sbjct: 486 KMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMR 539
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDV 51
C ND A ++ M + G PN TY L ++++ ++ G+ P +
Sbjct: 682 CKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSI 741
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
+Y+ ++DG CK GR +E + ++AI+ + P+VV + +I
Sbjct: 742 VSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVV------------------AYAILI 783
Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
+ C VG++ +A LL M +G P L L
Sbjct: 784 RGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 817
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A +++ + D G PNV T+ L A+++ ++ G++PD+ Y+ ++D
Sbjct: 270 ASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLID 329
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI--------------------G 99
G+ K G +L ++A+ +GV +VV + ID+ G
Sbjct: 330 GYFKAGMLGMGHKLFSQALHKGVKLDVVV---FSSTIDVYVKSGDLATASVVYKRMLCQG 386
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+ +I+ LC G+I +A + + + G PS Y +LI
Sbjct: 387 ISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 51/210 (24%), Positives = 74/210 (35%), Gaps = 67/210 (31%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N F EA KV M G P+V T+T + EA + + GL+PD
Sbjct: 506 WCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPD 565
Query: 51 VYTYTAVMDGFCK----------------------VGRSNEVMELL-------------N 75
Y ++D FCK + N V+ LL N
Sbjct: 566 ALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFN 625
Query: 76 EAIERGVTPNVVT-------------------LIHLHNVIDIGHIPRTITFNNVIQALCG 116
IE + P++VT + L V G P T+T +I LC
Sbjct: 626 NLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFG--PNTVTLTILIHVLCK 683
Query: 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+D A+ + +M E G P+ Y L+
Sbjct: 684 NNDMDGAIRMFSIMAEKGSKPNAVTYGCLM 713
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++ + + + PN T TIL A M + G KP+
Sbjct: 646 YCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPN 705
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
TY +MD F K +L E E+G++P++V+ ++ +
Sbjct: 706 AVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVS------------------YSII 747
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I LC G++D+A + + +P Y LI+
Sbjct: 748 IDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIR 784
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 46 GLKPD-VYTYTAVMDG-FCKVGRSNEVMELLNEAIERGVTPNVVT--------------- 88
G++P V + V+D FCK G + ++ +ERG +V+
Sbjct: 211 GIEPSGVSAHGFVLDALFCK-GEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQIEV 269
Query: 89 ---LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145
L+ L V+D G P +TF +I C G++D+A L +M + G P Y TL
Sbjct: 270 ASRLLSL--VLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTL 327
Query: 146 I 146
I
Sbjct: 328 I 328
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA + + M P++ TY++L EA EM + + G PDV TY+ ++
Sbjct: 274 EAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILI 333
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHI 101
+G+CK + M+L E +RGV N VT L ++ G
Sbjct: 334 NGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVH 393
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P IT+N ++ LC GKI+KAL++L M ++G Y+ +I+ +
Sbjct: 394 PNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGM 441
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + EA ++ +M G P+V TY+IL ++ + G+ +
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRT------ 104
TYT ++ G+C+ G+ N E+ + GV PN++T + LH + D G I +
Sbjct: 362 VTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILAD 421
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+T+N +I+ +C G++ A + + G +P Y T++
Sbjct: 422 MQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMM 473
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C A +++ M +G P+V TY L +A M+ + + PDV
Sbjct: 197 CKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDV 256
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVID-------- 97
+T+ A++D K GR +E E E I R + P++VT LI+ +++ +D
Sbjct: 257 FTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGF 316
Query: 98 ---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
G P +T++ +I C K++ + L M + G + + Y LI+
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQ 369
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 29/157 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-----------TILEAYEMLMNVKNDGLKP 49
C+C + A + M G+ P++ T+ + +A M + G KP
Sbjct: 125 CFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP 184
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+V Y ++DG CK + + ++LLN + G+ P+VV T+N+
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVV------------------TYNS 226
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I LC G+ A ++ M + P ++ LI
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALI 263
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ ++ T +++ FC+ + + + L + I+ G P++VT L N
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDA 170
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++ +G+ P + +N +I LC ++D AL LL M + G P Y++LI
Sbjct: 171 LYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG 230
Query: 149 L 149
L
Sbjct: 231 L 231
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC A ++ M G HPN+ TY +L +A +L +++ +G+ D
Sbjct: 371 YCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDAD 430
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
+ TY ++ G CK G + ++ +G+ P++ T
Sbjct: 431 IVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWT 468
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C+ +A ++ M NG ++ TY I+ +A+++ ++ GL PD+
Sbjct: 407 CDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDI 466
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
+TYT +M G K G E L + E G+ PN
Sbjct: 467 WTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIH 91
P + ++ ++ K+ + + V+ L + G+ N+ T L
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 92 LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
L +I +GH P +TF +++ C ++ AL + M G P+ +Y+T+I L
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGL 196
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 28/170 (16%)
Query: 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTA 56
++A V+ M +N PN+TT+ IL + ++ + + +KP+V +Y +
Sbjct: 277 MYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNS 336
Query: 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH-------LHNVIDI-------G 99
+++G C G+ +E + + ++ + GV PN++T LI+ L +D+ G
Sbjct: 337 LINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG 396
Query: 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+P T +N +I A C +GKID L M G +P Y+ LI L
Sbjct: 397 AVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGL 446
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN EA + D M G PN+ TY L EA +M +VK G P
Sbjct: 342 CNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTT 401
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LI-------------HLHNV 95
Y ++D +CK+G+ ++ L E G+ P+V T LI L +
Sbjct: 402 RMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQ 461
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +P +TF+ +++ C G+ KA +LL M + G P Y+ ++K
Sbjct: 462 LTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMK 513
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 31/160 (19%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M PNV T+ ++ +A +++ ++K G P+V +Y ++DG+CK+G
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGG 273
Query: 67 SNEVME---LLNEAIERGVTPNVVTLIHL-----------------HNVIDIGHIPRTIT 106
+ ++ + +L E +E V+PN+ T L ++D P I+
Sbjct: 274 NGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVIS 333
Query: 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+N++I LC GKI +A+ + M G P+ Y+ LI
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDV 51
YC + + + M G P+V TY L EA + L + PD+
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDL 470
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP--------- 102
T+ +M+G+C+ G S + LL E + G+ P +T +N++ G+
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLT----YNIVMKGYCKEGNLKAATN 526
Query: 103 -RT------------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
RT ++N ++Q GK++ A +LL M E G +P+R Y+ + +++
Sbjct: 527 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEM 586
Query: 150 DQQ 152
Q
Sbjct: 587 VDQ 589
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTI-LEAYEMLMNVK-----------NDGLKP 49
YC K + +A ++ M G P TY I ++ Y N+K L+
Sbjct: 480 YCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRM 539
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIP 102
+V +Y ++ G+ + G+ + LLNE +E+G+ PN +T I ++D G +P
Sbjct: 540 NVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVP 593
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+KV M +G P++ TY+IL +A E+ ++ +K D+Y YT +++
Sbjct: 454 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 513
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ ++ +L +GV PNVV T+N +I LC
Sbjct: 514 GMCKAGKVDDGWDLFCSLSLKGVKPNVV------------------TYNTMISGLCSKRL 555
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +A LL M E G +P+ Y+TLI+
Sbjct: 556 LQEAYALLKKMKEDGPLPNSGTYNTLIR 583
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A ++ M GY P++ T + L +A ++ + G +P
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G +++E + L++ ++RG PN+VT ++L
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 248
Query: 94 NVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ I + FN +I +LC +D AL L M G P+ Y +LI L
Sbjct: 249 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + ++ G++P+V TY++++ C GR ++ +LL++ IE+ + PN+VT L
Sbjct: 278 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 337
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++I P T+N+++ C ++DKA + M
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 397
Query: 137 PSRTLYDTLIK 147
P Y+TLIK
Sbjct: 398 PDVVTYNTLIK 408
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ D M P++ TY L +A +M + + PD
Sbjct: 340 FVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 399
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIH----------LH 93
V TY ++ GFCK R + EL E RG+ + VT L H
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 459
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
++ G P +T++ ++ LC GK++KAL
Sbjct: 460 QMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + M G PNV TY+ L +A ++L ++ + P++ T+ A++
Sbjct: 278 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 337
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH-----------I 101
D F K G+ E +L ++ I+R + P++ T L H+ +D
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 397
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +T+N +I+ C +++ L M G + Y TLI+ L
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+++ ++M P+V TY L + E+ + + GL D
Sbjct: 375 FCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TYT ++ G G + ++ + + GV P+++T I L + + G + + +
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 494
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I+ +C GK+D L + G P+ Y+T+I L
Sbjct: 495 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 550
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN---------------- 94
+YTY +++ FC+ + + + LL + ++ G P++VTL L N
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179
Query: 95 -VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++++G+ P TITF +I L K +A+ L+ M + G P+ Y ++ L
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV TY + EAY +L +K DG P+ TY ++ + G
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAAS 594
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
EL+ E + T+ + N++ G + ++
Sbjct: 595 AELIREMRSCRFVGDASTIGLVANMLHDGRLDKS 628
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+KV M +G P++ TY+IL +A E+ ++ +K D+Y YT +++
Sbjct: 379 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 438
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ ++ +L +GV PNVV T+N +I LC
Sbjct: 439 GMCKAGKVDDGWDLFCSLSLKGVKPNVV------------------TYNTMISGLCSKRL 480
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ +A LL M E G +P Y+TLI+
Sbjct: 481 LQEAYALLKKMKEDGPLPDSGTYNTLIR 508
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A ++ M GY P++ T + L +A ++ + G +P
Sbjct: 54 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 113
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G +++E + L++ ++RG PN+VT +L
Sbjct: 114 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 173
Query: 94 NVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ I + FN +I +LC +D AL L M G P+ Y +LI L
Sbjct: 174 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 230
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + ++ G++P+V TY++++ C GR ++ +LL++ IE+ + PN+VT L
Sbjct: 203 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 262
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
++I P T+N++I C ++DKA + M
Sbjct: 263 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 322
Query: 137 PSRTLYDTLIK 147
P Y+TLIK
Sbjct: 323 PDLDTYNTLIK 333
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + F EA K+ D M P++ TY L +A +M + + PD
Sbjct: 265 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIH----------LH 93
+ TY ++ GFCK R + EL E RG+ + VT L H
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124
++ G P +T++ ++ LC GK++KAL
Sbjct: 385 QMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C + +A+++ ++M P++ TY L + E+ + + GL D
Sbjct: 300 FCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 359
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTIT--- 106
TYT ++ G G + ++ + + GV P+++T I L + + G + + +
Sbjct: 360 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 419
Query: 107 -------------FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +I+ +C GK+D L + G P+ Y+T+I L
Sbjct: 420 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C+ + +A +++ M + +PN+ T+ L EA ++ ++ + P
Sbjct: 229 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP 288
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D++TY ++++GFC R ++ ++ + + P++ T+N
Sbjct: 289 DIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLD------------------TYNT 330
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I+ C +++ L M G + Y TLI+ L
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN----------- 94
G+ ++YTY +++ FC+ + + + LL + ++ G P++VTL L N
Sbjct: 40 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 99
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148
++++G+ P TITF +I L K +A+ L+ M + G P+ Y ++
Sbjct: 100 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 159
Query: 149 L 149
L
Sbjct: 160 L 160
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV TY + EAY +L +K DG PD TY ++ + G
Sbjct: 460 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 519
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
EL+ E + T+ + N++ G + ++
Sbjct: 520 AELIREMRSCRFVGDASTIGLVANMLHDGRLDKS 553
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPDVYTYTAV 57
+A +++ M G P++ TY L +A EM +VK+ + PDV TYT++
Sbjct: 224 KALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSM 283
Query: 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-----------------VIDIGH 100
+ G+CK G+ E LL++ + G+ P VT L + +I G
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343
Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF ++I C VG++ + L M G P+ Y LI L
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINAL 392
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----EAYEMLM------NVKNDGLKPD 50
YC EA ++D M G +P T+ +L +A EML + + G PD
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-------------- 96
V T+T+++DG+C+VG+ ++ L E RG+ PN T L N +
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406
Query: 97 -----DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
DI IP+ +N VI C GK+++A +++ M + P + + LI
Sbjct: 407 QLASKDI--IPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-----TL 89
A +M +K+DG+ P+ ++ F + G+ + LL ++ E VV TL
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181
Query: 90 IHLHNVIDIGHI----------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139
+ L V D + T TFN +I+ LCGVGK +KAL LL +M G P
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDI 241
Query: 140 TLYDTLIK 147
Y+TLI+
Sbjct: 242 VTYNTLIQ 249
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
CN+N +AR+++ + P Y + EA ++ ++ KPD
Sbjct: 393 CNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDK 452
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL 92
T+T ++ G C GR E + + ++ + G +P+ +T+ L
Sbjct: 453 ITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSL 493
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA +++ M P+ T+TIL EA + + G PD
Sbjct: 427 FCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPD 486
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89
T ++++ K G + E LN+ +G + NVV L
Sbjct: 487 KITVSSLLSCLLKAGMAKEAYH-LNQIARKGQSNNVVPL 524
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 30/177 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEML-MNVKNDGLKP 49
+ K +A K+ + M PN+ TY+ L EA +ML + ++ D L P
Sbjct: 333 FVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL-P 391
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------L 92
+V TY +++GFCK R ++ MEL E +RG+ N V TLIH
Sbjct: 392 NVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 451
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ +G P +T+N ++ LC GK+ KA+++ + P Y+ +I+ +
Sbjct: 452 KQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 508
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ N +A ++D M + GY P+ T+T L EA ++ + G +PD
Sbjct: 158 FCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPD 217
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY AV++G CK G ++ + LLN+ + NVV T+I H + +++
Sbjct: 218 LVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFT 277
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P IT++++I LC G+ A LL M E P+ + LI
Sbjct: 278 EMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALI 330
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 29/162 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C CN + +A +++ M + +PN+ T++ L +A ++ + + P
Sbjct: 297 CLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP 356
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
+++TY+++++GFC + R E ++L I + PNVV T+N
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVV------------------TYNT 398
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+I C ++DK + L M + G + + Y TLI Q
Sbjct: 399 LINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQ 440
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A +++ M NV Y+ + +A + ++N G++P+V
Sbjct: 229 CKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNV 288
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HN 94
TY++++ C GR ++ LL++ IER + PN+VT L
Sbjct: 289 ITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEE 348
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+I P T++++I C + ++ +A +L LM +P+ Y+TLI
Sbjct: 349 MIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLI 400
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---LHN----- 94
G +PD+ T ++++GFC R ++ + L+++ +E G P+ V TLIH LHN
Sbjct: 143 GYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEA 202
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIK 147
++ G P +T+ V+ LC G D AL LL M E KI + +Y T+I
Sbjct: 203 VALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKM-EAAKIEANVVIYSTVID 261
Query: 148 KL 149
L
Sbjct: 262 SL 263
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C+C + A ++ M GY P++ T I +A ++ + G KP
Sbjct: 122 CFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKP 181
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G +++E + L++ ++RG P++VT ++L
Sbjct: 182 DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLL 241
Query: 94 NVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ I + ++ VI +LC D AL L M G P+ Y +LI L
Sbjct: 242 NKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL 298
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 17/76 (22%)
Query: 8 FFEARK------VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
FF+AR V M G HPN+ TY IL +A + ++ ++PD
Sbjct: 438 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 497
Query: 51 VYTYTAVMDGFCKVGR 66
+YTY +++G CK G+
Sbjct: 498 IYTYNIMIEGMCKAGK 513
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 30/160 (18%)
Query: 2 YCNKNDFFEARKVIDYMFD-NGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
+C + +A I M + +G+ P+ T+ L A E++ + +G P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
DVYTY +V+ G CK+G E +E+L++ I R +PN T+T+N
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN------------------TVTYNT 370
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+I LC ++++A L ++ G +P +++LI+ L
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A ++ + M G P+ TY +L EA ML ++ G V TY ++D
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LHNVIDIGHIP 102
GFCK ++ E E+ +E GV+ N V TLI + +I G P
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N+++ C G I KA ++ M +G P Y TLI L
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V+T+ +L A ML ++ + GL PD T+T VM G+ + G +
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 71 MELLNEAIERGVT-PNVVTLIHLHNVIDIGHI-----------------PRTITFNNVIQ 112
+ + + +E G + NV + +H G + P TFN ++
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303
Query: 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
LC G + A+ ++ +M + G P Y+++I L
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 29/137 (21%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C N EA ++ D M +G N TY L +A +++ + +G KPD
Sbjct: 480 FCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPD 539
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YTY +++ FC+ G + +++ G P++V T+ +
Sbjct: 540 KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIV------------------TYGTL 581
Query: 111 IQALCGVGKIDKALLLL 127
I LC G+++ A LL
Sbjct: 582 ISGLCKAGRVEVASKLL 598
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 29/148 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C D +A ++ M NG P++ TY L A ++L +++ G+
Sbjct: 550 FCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLT 609
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ Y V+ G + ++ E + L E +E+ P P +++ V
Sbjct: 610 PHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP-----------------PDAVSYRIV 652
Query: 111 IQALC-GVGKIDKALLLLFLMYEHGKIP 137
+ LC G G I +A+ L + E G +P
Sbjct: 653 FRGLCNGGGPIREAVDFLVELLEKGFVP 680
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-HNVIDI-GHIPR 103
GLKPD + Y N ++ LL V N + L+ + H + + G P
Sbjct: 149 GLKPDTHFY-------------NRMLNLL-------VDGNSLKLVEISHAKMSVWGIKPD 188
Query: 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
TFN +I+ALC ++ A+L+L M +G +P + T+++
Sbjct: 189 VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQ 232
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++D MF GY PN T+ L EA ++ + G +PD
Sbjct: 161 YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD 220
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY V++G CK G ++ LLN+ + + P V+ T+I H+ + +++
Sbjct: 221 LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 280
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T++++I LC G+ A LL M E P + LI
Sbjct: 281 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 333
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C +A + M G PNV TY+ L +A +L ++ + PDV
Sbjct: 267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH----- 100
+T++A++D F K G+ E +L +E ++R + P++VT L H+ +D
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N +I+ C ++++ + + M + G + + Y+ LI+ L Q
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA +M + + PD
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
V TY ++ GFCK R E ME+ E +RG+ N T+T+N +
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN------------------TVTYNIL 437
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
IQ L G D A + M G P+ Y+TL+ L
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 6 NDFFEARKVIDYMFDNGYHPNVTTYTILE-----------AYEMLMNVKNDGLKPDVYTY 54
N EA +ID M G P++ TY ++ A+ +L ++ L+P V Y
Sbjct: 200 NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259
Query: 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------LHNVID 97
++DG CK ++ + L E +G+ PNVVT LI L ++I+
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319
Query: 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P TF+ +I A GK+ +A L M + PS Y +LI
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C E +V M G N TY IL A E+ + +DG+ P+
Sbjct: 406 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHI-------- 101
+ TY ++DG CK G+ + M + + P + T I + + G +
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 525
Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P + +N +I C G ++A L M E G +P+ Y+TLI+
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 579
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C ++ A V+ M GY PN+ T + L EA ++ + G +P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
+ T+ ++ G +++E M L++ + +G P++VT +L
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 244
Query: 94 NVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ G + P + +N +I LC +D AL L M G P+ Y +LI L
Sbjct: 245 NKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN------ 94
++N G+ + YTY+ +++ FC+ + + +L + ++ G PN+VTL L N
Sbjct: 106 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 95 -------VID----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143
++D G+ P T+TFN +I L K +A+ L+ M G P Y
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 144 TLIKKL 149
++ L
Sbjct: 226 VVVNGL 231
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C+ N EA ++D M + GY P+ T+T L EA ++ + G +PD
Sbjct: 145 FCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 204
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLI-------HLHNVIDI-- 98
+ TY AV++G CK G + + LLN+ + + +VV T+I H+ + +++
Sbjct: 205 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFT 264
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
G P T++++I LC G+ A LL M E P+ +++LI ++
Sbjct: 265 EMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL- 92
+A + + N G++PDV+TY++++ C GR ++ LL++ +ER + PNVVT L
Sbjct: 258 DALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLI 317
Query: 93 ----------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136
+I P +T+N++I C ++D+A + LM +
Sbjct: 318 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL 377
Query: 137 PSRTLYDTLI 146
P Y+TLI
Sbjct: 378 PDVVTYNTLI 387
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M PN+ TY L EA ++ + + PD
Sbjct: 320 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY +++GFCK + + MEL + RG+ N V TLIH
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127
++ G P +T+N ++ LC GK++KA+++
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 473
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 29/157 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ +D A+ V M +G HPN+ TY L +A + ++ ++PD
Sbjct: 425 FFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD 484
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+YTY + +G CK G+ + +L +GV P+V I +N +
Sbjct: 485 IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDV------------------IAYNTM 526
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
I C G ++A L M E G +P Y+TLI+
Sbjct: 527 ISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIR 563
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A + M + G P+V TY+ L +A +L ++ + P+V T+ +++
Sbjct: 258 DALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLI 317
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH---LHNVIDIGH-----------I 101
D F K G+ E +L +E I+R + PN+VT LI+ +H+ +D +
Sbjct: 318 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL 377
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
P +T+N +I C K+ + L M G + + Y TLI
Sbjct: 378 PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
C CN + +A +++ M + +PNV T+ ++EA ++ + + P
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------VID----- 97
++ TY ++++GFC R +E ++ + + P+VVT L N V+D
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 98 -----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
G + T+T+ +I D A ++ M G P+ Y+TL+ L
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C ++ A ++ M GY P++ T L EA ++ + G +P
Sbjct: 109 CLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 168
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLH 93
D T+T ++ G + +++E + L+ + +G P++VT ++L
Sbjct: 169 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLL 228
Query: 94 NVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
N ++ G I + ++ VI +LC +D AL L M G P Y +LI L
Sbjct: 229 NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ ++YTY +++ C+ + + + +L + ++ G P++VTL
Sbjct: 95 GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTL---------------- 138
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
N+++ C +I +A+ L+ M E G P + TL+ L Q
Sbjct: 139 --NSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 183
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
CN + +A + M + G PNV TY L +A +L ++ + P+V
Sbjct: 266 CNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNV 325
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGH----- 100
T++A++D F K G+ E +L +E I+R + P++ T L H+ +D
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 385
Query: 101 ------IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
P +T+N +I+ C ++++ + L M + G + + Y+TLI+ L Q
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC+ EA ++D MF Y PN T+ L EA ++ + G +PD
Sbjct: 160 YCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPD 219
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-------TLIHLHNVIDI----- 98
++TY V++G CK G + + LL + + + +VV L + NV D
Sbjct: 220 LFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFT 279
Query: 99 -----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P +T+N++I+ LC G+ A LL M E P+ + LI
Sbjct: 280 EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+ + EA K+ D M P++ TY+ L EA M + + P+
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
V TY ++ GFCK R E MEL E +RG+ N V TLI
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
++ G P IT++ ++ LC GK++KAL++ + + P Y+ +I+ +
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59
A+K+ M +G P++ TY+IL +A + ++ ++PD+YTY +++
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508
Query: 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119
G CK G+ + +L +GV PNV I + +I C G
Sbjct: 509 GMCKAGKVEDGWDLFCSLSLKGVKPNV------------------IIYTTMISGFCRKGL 550
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++A L M E G +P+ Y+TLI+
Sbjct: 551 KEEADALFREMKEDGTLPNSGTYNTLIR 578
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + D A ++ M +V YT + +A + + N G++P+V
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHI--------- 101
TY +++ C GR ++ LL++ IER + PNVVT L + + G +
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P T++++I C ++D+A + LM P+ Y+TLIK
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 403
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH---LHN----- 94
G +PD+ T +++++G+C R +E + L+++ PN V TLIH LHN
Sbjct: 145 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 204
Query: 95 ------VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIK 147
++ G P T+ V+ LC G ID AL LL M E GKI + +Y T+I
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIID 263
Query: 148 KL 149
L
Sbjct: 264 AL 265
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-------------VI 96
D+Y+Y +++ FC+ + + +L + ++ G P++VTL L N ++
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 173
Query: 97 D----IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
D + + P T+TFN +I L K +A+ L+ M G P Y T++ L
Sbjct: 174 DQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G PNV YT + EA + +K DG P+ TY ++ + G
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 589
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT 104
EL+ E G + T+ + N++ G + ++
Sbjct: 590 AELIKEMRSCGFVGDASTISMVINMLHDGRLEKS 623
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
+++D M +G+ P++ TY IL A +L +++ G++P V +T ++DG
Sbjct: 278 RLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGL 337
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLI-----------------HLHNVIDIGHIPRT 104
+ G+ ++E ++ G TP+VV + + G +P
Sbjct: 338 SRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNV 397
Query: 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
T+N++I+ C GK +A LL M G P+ +Y TL+ L
Sbjct: 398 FTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 442
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 27 VTTYTILE-AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85
V Y +++ YE ++ DG PDV TY VM ++G+++ + LL+E ++ G +P+
Sbjct: 235 VKQYKLIDWVYEQMLE---DGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPD 291
Query: 86 VVT---LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
+ T L+H L+++ ++G P I F +I L GK++ +
Sbjct: 292 LYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMD 351
Query: 129 LMYEHGKIPSRTLYDTLI 146
+ G P Y +I
Sbjct: 352 ETVKVGCTPDVVCYTVMI 369
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 24/93 (25%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
Y + + +A ++ M + G PN V+TY +++ GF
Sbjct: 372 YISGGELEKAEEMFKEMTEKGQLPN------------------------VFTYNSMIRGF 407
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
C G+ E LL E RG PN V L N
Sbjct: 408 CMAGKFKEACALLKEMESRGCNPNFVVYSTLVN 440
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 29/148 (19%)
Query: 13 KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
++ID M +GY T+ +L + E + K +P ++Y A++
Sbjct: 173 RLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSL 232
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121
V + + + + +E G TP+V +T+N V+ A +GK D
Sbjct: 233 LGVKQYKLIDWVYEQMLEDGFTPDV------------------LTYNIVMFANFRLGKTD 274
Query: 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ LL M + G P Y+ L+ L
Sbjct: 275 RLYRLLDEMVKDGFSPDLYTYNILLHHL 302
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 30/166 (18%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
EA KV++ M NG+ P++ TY L EA E+ + G KPDV+TYT ++
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT----------------LIHLHNVIDI-GHI 101
GF + G+ M + E G PN+ T ++ + + I++ G
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFL-MYEHGKIPSRTLYDTLI 146
P +T+N ++ A+ G +D + +F M G +P R ++TLI
Sbjct: 452 PDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 29/148 (19%)
Query: 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
+A V+DYM + G+ P++ TY L ++ E+L + G+KPD+ +Y V+
Sbjct: 647 KANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI 706
Query: 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
+C+ R + + +E G+ P+V IT+N I +
Sbjct: 707 YAYCRNTRMRDASRIFSEMRNSGIVPDV------------------ITYNTFIGSYAADS 748
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++A+ ++ M +HG P++ Y++++
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 29/149 (19%)
Query: 14 VIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62
+++ M +G P+ TY L EA ++ +K G D TY A++D +
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122
K R E M++LNE + G +P++V T+N++I A G +D+
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIV------------------TYNSLISAYARDGMLDE 367
Query: 123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
A+ L M E G P Y TL+ ++
Sbjct: 368 AMELKNQMAEKGTKPDVFTYTTLLSGFER 396
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 7 DFFEARKVIDYMFDNGYHPNVTTY-----TILEAYEMLMNVKNDGLKPDVYTYTAVMDGF 61
D+F +K M DN + + + A M ++ DG DVY+YT+++ F
Sbjct: 159 DWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAF 218
Query: 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
GR E + + + E G P ++T +NVI
Sbjct: 219 ANSGRYREAVNVFKKMEEDGCKPTLIT----YNVI 249
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC +A ++ M ++G P+V TY EA ++ + G +P+
Sbjct: 709 YCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768
Query: 51 VYTYTAVMDGFCKVGRSNE 69
TY +++DG+CK+ R +E
Sbjct: 769 QNTYNSIVDGYCKLNRKDE 787
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y N+ F E K+ D + G P++ T+ L E + +K G P+
Sbjct: 429 YGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
T+ ++ + + G + M + ++ GVTP++ T +N V
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLST------------------YNTV 530
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
+ AL G +++ +L M + P+ Y +L+
Sbjct: 531 LAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY----------EMLMNVKNDGLKPD 50
Y F +A V M D G P+++TY T+L A ++L +++ KP+
Sbjct: 499 YSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPN 558
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT-PNVV---TLIHLHNVIDI-------- 98
TY +++ + G+ +M L E + GV P V TL+ + + D+
Sbjct: 559 ELTYCSLLHAYAN-GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAF 617
Query: 99 ------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
G P T N+++ + KA +L M E G PS Y++L+
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM 671
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++A+K D M G PNV TY L E ++ + +G D+
Sbjct: 292 CMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI 351
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRT------ 104
+TY ++ G+C+VG+ +++ + R VTP+++T I LH + G I
Sbjct: 352 FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDD 411
Query: 105 ----------ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ +N +I LC K++KA L + G P Y +I L
Sbjct: 412 MRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGL 466
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C+C + A V+ M GY P++ T+ L +A+ +++ + G +P
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEP 174
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------LIHLHNVIDIGHI- 101
+V Y ++DG CK G N +ELLNE ++G+ +VVT L + D +
Sbjct: 175 NVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARML 234
Query: 102 ---------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
P +TF +I G +D+A L M + P+ Y+++I L
Sbjct: 235 RDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+ D+Y++T ++ FC+ R + + +L + ++ G P++V
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIV------------------ 142
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
TF +++ C V +I A L+ LM + G P+ +Y+TLI L
Sbjct: 143 TFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGL 186
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C + +A +++ M +P+V T+T L EA E+ + + P+
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL------HNVIDIGHI---- 101
TY ++++G C GR + + + +G PNVVT L ++D G
Sbjct: 282 VTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQR 341
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137
T+N +I C VGK+ AL + M P
Sbjct: 342 MSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTP 384
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+A+E+ + +G+KPD TYT ++ G CK G E EL+ E G+
Sbjct: 439 KAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEMLMNVKN----------DGLKP 49
C C A + M D G PN+ T+ T L Y + +VK G KP
Sbjct: 434 CLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKP 493
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI--- 105
DV T++ +++ C+ + + E +E G+ PN +T I + + G R++
Sbjct: 494 DVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLF 553
Query: 106 -------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
+N IQ+ C + K+ KA LL M G P Y TLIK L +
Sbjct: 554 AKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSE 612
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C +D E ++ D G P Y +L E L + DGL
Sbjct: 364 CLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLS 423
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IH--L 92
VY+Y AV+D CK R L E +RG++PN+VT +H L
Sbjct: 424 SVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVL 483
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
++ G P ITF+ +I LC +I A M E G P+ Y+ LI+
Sbjct: 484 EKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIR 538
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 30/161 (18%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
C C + +A M + G PN TY IL + ++ +K +GL P
Sbjct: 504 CLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSP 563
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
D+Y Y A + FCK+ + + ELL + G+ P+ T++
Sbjct: 564 DLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPD------------------NFTYST 605
Query: 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
+I+AL G+ +A + + HG +P + L+++LD
Sbjct: 606 LIKALSESGRESEAREMFSSIERHGCVPD-SYTKRLVEELD 645
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 18 MFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 66
M +G P+ TY IL EA ++ ++ +G +P+V+TYT ++DGF GR
Sbjct: 206 MRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGR 265
Query: 67 SNEVMELLNEAIERGVTPNVVTL 89
+E ++ L R + PN T+
Sbjct: 266 VDEALKQLEMMRVRKLNPNEATI 288
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94
AY +++DG KPD +TY ++ G CK G +E + L+ + + G PNV
Sbjct: 199 AYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNV-------- 250
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
T+ +I G++D+AL L +M
Sbjct: 251 ----------FTYTILIDGFLIAGRVDEALKQLEMM 276
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 19/131 (14%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN----VVTL 89
E + L + G PD T+ A M K E + + + RGV P +V +
Sbjct: 338 ETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLV 397
Query: 90 IHLHNV--------------IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135
L N +D G + ++N VI LC +I+ A + L M + G
Sbjct: 398 QALLNAQRFSEGDRYLKQMGVD-GLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGI 456
Query: 136 IPSRTLYDTLI 146
P+ ++T +
Sbjct: 457 SPNLVTFNTFL 467
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 18/101 (17%)
Query: 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105
G+KP Y AV+D K SN + + + + G P
Sbjct: 175 GMKPSTRLYNAVIDALVK---SNSLD---------------LAYLKFQQMRSDGCKPDRF 216
Query: 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
T+N +I +C G +D+A+ L+ M + G P+ Y LI
Sbjct: 217 TYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILI 257
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 36/179 (20%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPDV 51
C EA V M + P+V TY ++ A+E+L ++ KP+V
Sbjct: 347 CRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNV 406
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------------LIHL 92
T+ +M+G C+VG+ + + LL ++ G++P++V+ L+
Sbjct: 407 RTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSS 466
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG----KIPSRTLYDTLIK 147
N DI P +TF +I A C GK D A L LM G ++ TL D + K
Sbjct: 467 MNCFDIE--PDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCK 523
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA + D M + G P+ TYT+L +A+ + + G KP+V
Sbjct: 277 CEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNV 336
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN-VIDIGHI--------- 101
+TYT ++DG C+ G+ E + + ++ + P+V+T L N G +
Sbjct: 337 HTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTV 396
Query: 102 -------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
P TFN +++ LC VGK KA+ LL M ++G P Y+ LI L ++
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCRE 454
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 29/137 (21%)
Query: 22 GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
G P+V TYT L ++ +L +K G P+VY YT +++G C+ GR E
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130
+LL+ + GV+PN VT + V+ G++ NN GK+D+AL + M
Sbjct: 636 EKLLSAMQDSGVSPNHVT----YTVMVKGYV------NN--------GKLDRALETVRAM 677
Query: 131 YEHGKIPSRTLYDTLIK 147
E G + +Y +L++
Sbjct: 678 VERGYELNDRIYSSLLQ 694
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 63/212 (29%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C ++A ++ M DNG P++ +Y +L AY++L ++ ++PD
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDC 476
Query: 52 YTYTAVM-----------------------------------DGFCKVGRSNEVMELLNE 76
T+TA++ DG CKVG++ + + +L
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILET 536
Query: 77 AIERGV--TPNVVTLI---------------HLHNVIDIGHIPRTITFNNVIQALCGVGK 119
++ + TP+ + +I L + +G +P +T+ ++ L G
Sbjct: 537 LVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596
Query: 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151
I + +L LM G +P+ Y +I L Q
Sbjct: 597 ITGSFRILELMKLSGCLPNVYPYTIIINGLCQ 628
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLH 93
E ML + GL P V TYT ++DG + G +L G PNV
Sbjct: 564 EELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVY------ 617
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
P TI +I LC G++++A LL M + G P+ Y ++K
Sbjct: 618 --------PYTI----IINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 31/141 (21%)
Query: 12 RKVIDYMFDNGYHPNVTTYTILEAYEMLMN-VKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70
R +++ + NGY EA EM M+ + G D + T+++ GFC
Sbjct: 199 RTIVNALCKNGYT---------EAAEMFMSKILKIGFVLDSHIGTSLLLGFC-------- 241
Query: 71 MELLNEAIERGVTPNVVTLIHLHNVI--DIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128
RG+ N+ + + +V+ ++ P +++++ +I LC VG++++A L
Sbjct: 242 ---------RGL--NLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKD 290
Query: 129 LMYEHGKIPSRTLYDTLIKKL 149
M E G PS Y LIK L
Sbjct: 291 QMGEKGCQPSTRTYTVLIKAL 311
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 83/214 (38%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C EA K++ M D+G PN TYT++ A E + + G + +
Sbjct: 627 CQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELND 686
Query: 52 YTYTAVMDGF-------------------------------------------------- 61
Y++++ GF
Sbjct: 687 RIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECINELISVVEQLGGCISGLCIFLV 746
Query: 62 ---CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118
CK GR++E +L+ +ERGV L +DI ++++ C
Sbjct: 747 TRLCKEGRTDESNDLVQNVLERGV--------FLEKAMDI-----------IMESYCSKK 787
Query: 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
K K + L+ L+ + G +PS + +I+ L ++
Sbjct: 788 KHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKE 821
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
YC D +A + D M +G P TYT L EA E+ V G+KPD
Sbjct: 407 YCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPD 466
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
+ +MDG C +G + LL E + P+ +T+N +
Sbjct: 467 LVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPD------------------DVTYNCL 508
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ LCG GK ++A L+ M G P Y+TLI
Sbjct: 509 MRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLI 544
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAYEM----------LMNVKNDGLKPDV 51
C + +A+ + M G P + TY T+++ + + + +K+ G +PD+
Sbjct: 236 CKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDM 295
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-----------------LIHLHN 94
TY ++ C GR++EV L E E G+ P+ V+ +
Sbjct: 296 QTYNPILSWMCNEGRASEV---LREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDE 352
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
++ G +P T+N +I L KI+ A +L+ + E G + Y+ LI
Sbjct: 353 MVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILI 404
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
C KN EA ++ + + G P++ L A+ +L + + PD
Sbjct: 443 CRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502
Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN-------------- 94
TY +M G C G+ E EL+ E RG+ P+ + TLI ++
Sbjct: 503 VTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDE 562
Query: 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150
++ +G P +T+N +++ L + + A LL M G +P+ + + ++I+ +
Sbjct: 563 MLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMS 618
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 28/174 (16%)
Query: 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMN-VKNDGLKPDVY 52
N D A D M G P TY L EA E+L+ ++ G+ D
Sbjct: 339 NNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSV 398
Query: 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------HNV 95
TY +++G+C+ G + + L +E + G+ P T L V
Sbjct: 399 TYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKV 458
Query: 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
+ G P + N ++ C +G +D+A LL M P Y+ L++ L
Sbjct: 459 VGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGL 512
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 31/175 (17%)
Query: 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-ILEAYEMLMNVKNDG----------LKP 49
C C EA + M + G++P T IL L ++N +K
Sbjct: 164 CCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKS 223
Query: 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------L 92
+VYT+ +++ CK G+ + L G+ P +V TL+ +
Sbjct: 224 NVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLII 283
Query: 93 HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
+ G P T+N ++ +C G+ + +L M E G +P Y+ LI+
Sbjct: 284 SEMKSKGFQPDMQTYNPILSWMCNEGRASE---VLREMKEIGLVPDSVSYNILIR 335
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y K D A V D M G++P + TY L A E+L +K++G+ P+
Sbjct: 547 YSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPN 606
Query: 51 VYTYTAVMDGF 61
++ +V++
Sbjct: 607 DSSFCSVIEAM 617
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
Y N +A ++ M G+ PN YT+L EA ++ + ++ + D
Sbjct: 297 YANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEAD 356
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-----------------LH 93
V TYTA++ GFCK G+ ++ +L++ I++G+ P+ +T +H +
Sbjct: 357 VVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELME 416
Query: 94 NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152
+ I + P +N VI+ C +G++ +A+ L M E+G P + +I L Q
Sbjct: 417 KMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQ 475
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
+C EA+ V+ M + G+ P++ YT L +AY++L +++ G +P+
Sbjct: 262 WCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPN 321
Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
YT ++ CKV R E M++ E +VV T+ +
Sbjct: 322 ANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVV------------------TYTAL 363
Query: 111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
+ C GKIDK ++L M + G +PS Y
Sbjct: 364 VSGFCKWGKIDKCYIVLDDMIKKGLMPSELTY 395
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
K F E ++++ M YHP++ Y ++ EA + ++ +GL P V T
Sbjct: 405 KESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDT 464
Query: 54 YTAVMDGFCKVGRSNEVMELLNEAIERGV 82
+ +++G G E + E + RG+
Sbjct: 465 FVIMINGLASQGCLLEASDHFKEMVTRGL 493
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 32 ILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV---VT 88
+ +A E+L + G +PD Y + ++D CK G + +L + R N+ +
Sbjct: 199 VKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR-FPVNLRYFTS 257
Query: 89 LIH--------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
L++ L + + G P + + N++ GK+ A LL M G
Sbjct: 258 LLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRG 317
Query: 135 KIPSRTLYDTLIKKL 149
P+ Y LI+ L
Sbjct: 318 FEPNANCYTVLIQAL 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,982,432
Number of Sequences: 539616
Number of extensions: 2312005
Number of successful extensions: 9630
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 5923
Number of HSP's gapped (non-prelim): 1801
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)