Query 047010
Match_columns 153
No_of_seqs 130 out of 1295
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 06:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.3E-31 1.1E-35 207.2 19.1 152 2-153 589-768 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8E-31 1.7E-35 206.2 19.1 152 2-153 447-628 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 6.6E-29 1.4E-33 191.0 14.6 148 2-153 269-440 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.3E-28 9.4E-33 186.5 14.8 149 1-153 299-476 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3E-27 6.6E-32 185.3 16.5 120 34-153 271-403 (857)
6 PLN03077 Protein ECB2; Provisi 99.9 1.1E-25 2.4E-30 176.6 15.7 149 1-153 262-438 (857)
7 PF13041 PPR_2: PPR repeat fam 99.8 7.2E-19 1.6E-23 91.4 6.5 50 102-151 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 2.9E-17 6.2E-22 85.3 6.5 50 49-116 1-50 (50)
9 KOG4422 Uncharacterized conser 99.6 3.3E-14 7.1E-19 101.3 14.4 150 4-153 127-326 (625)
10 PF12854 PPR_1: PPR repeat 99.4 4.7E-13 1E-17 63.4 3.8 34 45-78 1-34 (34)
11 PF12854 PPR_1: PPR repeat 99.4 6.9E-13 1.5E-17 62.8 3.7 34 98-131 1-34 (34)
12 TIGR00756 PPR pentatricopeptid 99.1 2.6E-10 5.6E-15 54.2 4.0 34 52-85 1-34 (35)
13 TIGR00756 PPR pentatricopeptid 99.1 3.1E-10 6.6E-15 53.9 4.2 35 105-139 1-35 (35)
14 KOG4422 Uncharacterized conser 99.1 8.2E-09 1.8E-13 74.3 12.6 88 2-89 217-315 (625)
15 PF13812 PPR_3: Pentatricopept 99.0 5.2E-10 1.1E-14 52.9 4.1 33 105-137 2-34 (34)
16 PRK11788 tetratricopeptide rep 99.0 7.7E-08 1.7E-12 69.9 16.2 46 102-149 280-325 (389)
17 PF13812 PPR_3: Pentatricopept 99.0 1.1E-09 2.3E-14 51.8 4.4 33 52-84 2-34 (34)
18 PRK11788 tetratricopeptide rep 98.9 1.6E-07 3.5E-12 68.2 15.9 47 34-81 125-171 (389)
19 PF01535 PPR: PPR repeat; Int 98.9 2.7E-09 5.8E-14 49.3 3.3 31 52-82 1-31 (31)
20 PF01535 PPR: PPR repeat; Int 98.9 4E-09 8.7E-14 48.6 3.6 31 105-135 1-31 (31)
21 PF06239 ECSIT: Evolutionarily 98.7 8.4E-07 1.8E-11 58.9 10.5 105 47-153 43-152 (228)
22 TIGR02917 PEP_TPR_lipo putativ 98.6 1.6E-05 3.5E-10 62.9 17.9 115 34-151 687-816 (899)
23 TIGR02917 PEP_TPR_lipo putativ 98.5 2.7E-05 5.9E-10 61.6 18.2 145 3-153 714-885 (899)
24 PF08579 RPM2: Mitochondrial r 98.5 1.2E-05 2.5E-10 48.1 10.8 82 52-151 26-116 (120)
25 KOG4318 Bicoid mRNA stability 98.4 3.1E-06 6.7E-11 66.0 9.7 54 93-146 192-246 (1088)
26 PF12921 ATP13: Mitochondrial 98.3 1.6E-05 3.6E-10 48.9 9.9 98 50-150 1-99 (126)
27 KOG4318 Bicoid mRNA stability 98.3 6.2E-07 1.3E-11 69.7 3.9 84 38-122 12-101 (1088)
28 PF08579 RPM2: Mitochondrial r 98.3 6.3E-06 1.4E-10 49.2 6.8 62 34-95 43-113 (120)
29 TIGR02521 type_IV_pilW type IV 98.3 0.00039 8.4E-09 46.3 17.0 144 2-149 41-213 (234)
30 PF13429 TPR_15: Tetratricopep 98.1 0.00017 3.7E-09 50.4 11.5 144 4-153 89-262 (280)
31 PF10037 MRP-S27: Mitochondria 98.0 8.9E-05 1.9E-09 54.6 10.2 106 46-151 61-185 (429)
32 PF06239 ECSIT: Evolutionarily 98.0 4E-05 8.7E-10 51.1 7.1 63 4-66 64-153 (228)
33 PRK10747 putative protoheme IX 97.9 0.0019 4.2E-08 47.6 15.5 147 2-153 197-375 (398)
34 PF13429 TPR_15: Tetratricopep 97.9 6.4E-05 1.4E-09 52.5 7.4 147 2-152 18-193 (280)
35 COG3071 HemY Uncharacterized e 97.9 0.0018 4E-08 46.7 14.5 150 1-153 196-375 (400)
36 PRK15174 Vi polysaccharide exp 97.9 0.0058 1.3E-07 48.0 18.6 74 4-80 88-173 (656)
37 KOG3941 Intermediate in Toll s 97.9 0.00052 1.1E-08 47.8 11.1 104 48-153 64-172 (406)
38 TIGR00540 hemY_coli hemY prote 97.9 0.0018 4E-08 47.8 14.7 151 2-153 197-384 (409)
39 PRK15174 Vi polysaccharide exp 97.9 0.0075 1.6E-07 47.4 18.4 23 57-79 218-240 (656)
40 PF10037 MRP-S27: Mitochondria 97.8 0.00033 7.3E-09 51.7 9.1 48 106-153 105-152 (429)
41 PRK12370 invasion protein regu 97.7 0.0051 1.1E-07 47.3 15.0 125 4-132 316-469 (553)
42 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0035 7.6E-08 46.1 11.9 106 4-131 181-295 (395)
43 TIGR00990 3a0801s09 mitochondr 97.6 0.015 3.3E-07 45.3 16.1 95 34-132 383-495 (615)
44 COG2956 Predicted N-acetylgluc 97.5 0.012 2.5E-07 41.9 13.5 43 91-133 236-278 (389)
45 PRK15359 type III secretion sy 97.5 0.0056 1.2E-07 38.6 11.1 88 34-143 42-129 (144)
46 TIGR02552 LcrH_SycD type III s 97.5 0.0062 1.3E-07 37.5 11.2 90 34-145 35-124 (135)
47 PF03704 BTAD: Bacterial trans 97.5 0.002 4.2E-08 40.6 8.9 74 52-144 63-141 (146)
48 PRK10747 putative protoheme IX 97.5 0.014 3E-07 43.1 14.4 132 3-139 129-296 (398)
49 PRK12370 invasion protein regu 97.5 0.026 5.5E-07 43.6 16.1 95 34-133 322-435 (553)
50 COG3071 HemY Uncharacterized e 97.5 0.021 4.6E-07 41.5 14.7 104 35-139 172-298 (400)
51 TIGR00990 3a0801s09 mitochondr 97.5 0.019 4.2E-07 44.7 15.5 126 4-132 411-570 (615)
52 PF13170 DUF4003: Protein of u 97.4 0.011 2.4E-07 41.9 12.2 117 8-143 78-221 (297)
53 PF04733 Coatomer_E: Coatomer 97.4 0.0039 8.5E-08 44.0 10.0 110 2-133 141-265 (290)
54 KOG1126 DNA-binding cell divis 97.4 0.014 2.9E-07 44.9 12.9 138 1-145 430-596 (638)
55 PF14559 TPR_19: Tetratricopep 97.3 0.0022 4.8E-08 34.6 6.7 65 62-147 2-66 (68)
56 TIGR00540 hemY_coli hemY prote 97.3 0.04 8.8E-07 40.8 16.8 128 4-134 130-293 (409)
57 TIGR02521 type_IV_pilW type IV 97.3 0.022 4.8E-07 37.7 15.2 128 2-132 75-231 (234)
58 PRK09782 bacteriophage N4 rece 97.3 0.038 8.1E-07 45.5 15.6 17 4-20 521-537 (987)
59 PLN03088 SGT1, suppressor of 97.2 0.023 5E-07 41.4 12.8 79 50-149 35-113 (356)
60 cd00189 TPR Tetratricopeptide 97.2 0.0096 2.1E-07 33.1 9.0 64 50-132 33-96 (100)
61 KOG2003 TPR repeat-containing 97.2 0.053 1.1E-06 40.6 14.4 103 48-152 589-707 (840)
62 KOG1155 Anaphase-promoting com 97.2 0.03 6.5E-07 41.8 13.0 146 4-150 274-477 (559)
63 KOG1126 DNA-binding cell divis 97.2 0.009 1.9E-07 45.9 10.6 129 2-133 363-518 (638)
64 PRK09782 bacteriophage N4 rece 97.2 0.064 1.4E-06 44.2 15.8 122 6-133 490-638 (987)
65 PF12895 Apc3: Anaphase-promot 97.0 0.0029 6.3E-08 35.9 5.5 82 5-129 2-83 (84)
66 PF09976 TPR_21: Tetratricopep 97.0 0.033 7.2E-07 35.0 10.9 76 34-129 66-143 (145)
67 PRK11447 cellulose synthase su 97.0 0.072 1.6E-06 44.8 14.9 105 3-132 584-699 (1157)
68 PF13424 TPR_12: Tetratricopep 97.0 0.0088 1.9E-07 33.2 6.9 66 52-132 6-74 (78)
69 KOG1129 TPR repeat-containing 96.9 0.013 2.9E-07 41.9 8.9 119 2-144 233-363 (478)
70 KOG3941 Intermediate in Toll s 96.9 0.0057 1.2E-07 42.8 6.8 72 6-77 86-185 (406)
71 PF13432 TPR_16: Tetratricopep 96.9 0.011 2.4E-07 31.6 6.8 57 58-133 4-60 (65)
72 KOG1173 Anaphase-promoting com 96.9 0.053 1.2E-06 41.3 12.2 128 2-151 390-534 (611)
73 PRK14574 hmsH outer membrane p 96.9 0.13 2.7E-06 41.7 15.0 78 2-79 302-395 (822)
74 PF05843 Suf: Suppressor of fo 96.9 0.012 2.6E-07 41.3 8.5 125 5-148 14-149 (280)
75 PF03704 BTAD: Bacterial trans 96.9 0.012 2.6E-07 36.9 7.8 60 34-94 80-144 (146)
76 PRK15359 type III secretion sy 96.9 0.048 1E-06 34.4 10.4 78 53-150 26-103 (144)
77 PRK11447 cellulose synthase su 96.8 0.24 5.2E-06 41.8 16.8 71 4-77 473-555 (1157)
78 PRK10049 pgaA outer membrane p 96.8 0.092 2E-06 42.2 13.7 134 3-139 248-426 (765)
79 PRK14574 hmsH outer membrane p 96.8 0.1 2.2E-06 42.3 13.7 145 3-152 45-216 (822)
80 KOG1840 Kinesin light chain [C 96.8 0.035 7.5E-07 42.3 10.5 130 2-131 209-394 (508)
81 KOG2003 TPR repeat-containing 96.7 0.17 3.6E-06 38.1 14.3 143 4-151 502-671 (840)
82 PRK10049 pgaA outer membrane p 96.7 0.25 5.4E-06 39.8 16.5 108 4-133 27-145 (765)
83 PF09295 ChAPs: ChAPs (Chs5p-A 96.6 0.11 2.5E-06 38.3 12.0 95 54-153 172-282 (395)
84 PF13414 TPR_11: TPR repeat; P 96.5 0.047 1E-06 29.4 7.9 64 50-132 2-66 (69)
85 TIGR02552 LcrH_SycD type III s 96.5 0.092 2E-06 32.2 10.3 81 50-150 16-96 (135)
86 cd00189 TPR Tetratricopeptide 96.5 0.057 1.2E-06 29.8 8.9 77 53-149 2-78 (100)
87 PF04733 Coatomer_E: Coatomer 96.4 0.18 3.9E-06 35.8 11.8 97 49-149 129-245 (290)
88 KOG1155 Anaphase-promoting com 96.4 0.28 6E-06 36.9 12.9 66 48-132 429-494 (559)
89 KOG1840 Kinesin light chain [C 96.4 0.13 2.7E-06 39.3 11.3 95 52-146 368-498 (508)
90 PF13371 TPR_9: Tetratricopept 96.3 0.071 1.5E-06 29.0 7.9 64 59-143 3-66 (73)
91 TIGR02795 tol_pal_ybgF tol-pal 96.3 0.11 2.3E-06 30.9 11.1 68 51-134 39-106 (119)
92 KOG1914 mRNA cleavage and poly 96.2 0.11 2.3E-06 39.7 9.9 75 36-128 351-425 (656)
93 PF14559 TPR_19: Tetratricopep 96.2 0.012 2.7E-07 31.6 4.0 53 4-81 3-55 (68)
94 KOG3081 Vesicle coat complex C 96.2 0.25 5.4E-06 34.5 10.8 47 34-81 191-237 (299)
95 PRK15179 Vi polysaccharide bio 96.2 0.39 8.5E-06 38.3 13.3 106 4-132 98-216 (694)
96 COG4783 Putative Zn-dependent 96.2 0.32 6.8E-06 36.6 12.0 46 34-80 324-369 (484)
97 COG3063 PilF Tfp pilus assembl 96.1 0.24 5.2E-06 33.8 12.1 111 2-132 45-167 (250)
98 COG4783 Putative Zn-dependent 96.1 0.3 6.5E-06 36.7 11.7 140 3-149 317-472 (484)
99 PF13432 TPR_16: Tetratricopep 96.0 0.035 7.6E-07 29.6 5.3 53 3-80 8-60 (65)
100 PRK10370 formate-dependent nit 96.0 0.25 5.5E-06 32.9 14.7 94 48-143 70-182 (198)
101 KOG1129 TPR repeat-containing 95.9 0.4 8.7E-06 34.7 11.9 99 34-133 342-458 (478)
102 KOG3081 Vesicle coat complex C 95.6 0.47 1E-05 33.2 11.7 122 2-146 118-248 (299)
103 COG3629 DnrI DNA-binding trans 95.6 0.46 1E-05 33.5 10.5 78 53-149 155-237 (280)
104 PRK10370 formate-dependent nit 95.6 0.33 7.1E-06 32.3 9.5 76 3-81 84-174 (198)
105 KOG1070 rRNA processing protei 95.5 1.2 2.6E-05 38.1 13.8 37 103-139 1633-1669(1710)
106 KOG0553 TPR repeat-containing 95.5 0.56 1.2E-05 33.2 10.8 93 34-148 99-191 (304)
107 PF12895 Apc3: Anaphase-promot 95.5 0.037 8E-07 31.2 4.1 41 34-76 43-83 (84)
108 PF02284 COX5A: Cytochrome c o 95.3 0.093 2E-06 31.0 5.3 57 90-147 31-87 (108)
109 cd00923 Cyt_c_Oxidase_Va Cytoc 95.3 0.19 4.2E-06 29.4 6.5 56 90-147 28-84 (103)
110 TIGR03302 OM_YfiO outer membra 95.3 0.55 1.2E-05 31.8 12.8 145 2-151 43-215 (235)
111 cd05804 StaR_like StaR_like; a 95.2 0.78 1.7E-05 33.0 12.3 82 34-132 132-214 (355)
112 PRK11189 lipoprotein NlpI; Pro 95.1 0.76 1.6E-05 32.6 17.7 38 105-143 237-274 (296)
113 KOG2002 TPR-containing nuclear 95.1 0.19 4.2E-06 40.8 8.2 110 34-144 630-756 (1018)
114 KOG0547 Translocase of outer m 95.1 0.98 2.1E-05 34.4 11.2 97 34-131 446-564 (606)
115 PF12569 NARP1: NMDA receptor- 94.9 1.3 2.9E-05 34.1 13.3 41 102-144 190-233 (517)
116 TIGR03302 OM_YfiO outer membra 94.9 0.74 1.6E-05 31.1 12.3 112 2-133 80-232 (235)
117 COG5010 TadD Flp pilus assembl 94.8 0.86 1.9E-05 31.6 11.7 32 48-79 131-162 (257)
118 PF09976 TPR_21: Tetratricopep 94.8 0.56 1.2E-05 29.4 10.7 104 8-132 8-113 (145)
119 PRK02603 photosystem I assembl 94.7 0.67 1.4E-05 29.9 10.8 68 50-133 34-101 (172)
120 PRK15363 pathogenicity island 94.7 0.66 1.4E-05 29.8 10.0 71 50-139 68-139 (157)
121 PF13371 TPR_9: Tetratricopept 94.7 0.33 7.1E-06 26.3 7.0 55 2-81 5-59 (73)
122 KOG2002 TPR-containing nuclear 94.7 0.72 1.6E-05 37.7 10.2 72 6-79 626-708 (1018)
123 PF13176 TPR_7: Tetratricopept 94.7 0.13 2.8E-06 24.0 4.1 26 53-78 1-26 (36)
124 PF05843 Suf: Suppressor of fo 94.6 0.38 8.3E-06 33.9 7.9 32 102-133 68-99 (280)
125 PF12921 ATP13: Mitochondrial 94.5 0.5 1.1E-05 29.2 7.4 78 1-87 11-89 (126)
126 cd05804 StaR_like StaR_like; a 94.5 1.3 2.7E-05 32.0 14.5 108 4-133 55-177 (355)
127 TIGR02795 tol_pal_ybgF tol-pal 94.4 0.56 1.2E-05 27.7 9.8 66 52-133 3-68 (119)
128 KOG3785 Uncharacterized conser 94.3 0.56 1.2E-05 34.3 8.1 64 50-134 426-491 (557)
129 CHL00033 ycf3 photosystem I as 94.2 0.91 2E-05 29.1 10.6 69 49-133 33-101 (168)
130 PRK10803 tol-pal system protei 94.1 1.3 2.9E-05 30.9 9.7 89 34-140 161-251 (263)
131 KOG2076 RNA polymerase III tra 94.0 2.8 6.2E-05 34.1 14.6 78 2-81 150-237 (895)
132 PLN03098 LPA1 LOW PSII ACCUMUL 94.0 2 4.4E-05 32.4 11.1 68 49-133 73-141 (453)
133 PF13176 TPR_7: Tetratricopept 94.0 0.19 4.1E-06 23.4 3.9 26 106-131 1-26 (36)
134 KOG2053 Mitochondrial inherita 93.8 3.1 6.8E-05 34.0 12.5 121 5-149 22-154 (932)
135 PF13374 TPR_10: Tetratricopep 93.8 0.28 6.1E-06 23.1 4.4 29 51-79 2-30 (42)
136 COG2956 Predicted N-acetylgluc 93.7 1.9 4.1E-05 31.2 13.4 127 6-134 194-348 (389)
137 PF12688 TPR_5: Tetratrico pep 93.7 0.95 2.1E-05 27.7 11.3 80 52-151 39-118 (120)
138 PRK10153 DNA-binding transcrip 93.6 2.7 5.8E-05 32.5 13.5 65 49-133 418-482 (517)
139 KOG4340 Uncharacterized conser 93.5 2 4.3E-05 30.9 11.3 124 4-129 156-335 (459)
140 PF13428 TPR_14: Tetratricopep 93.5 0.27 5.8E-06 24.0 4.1 28 53-80 3-30 (44)
141 PRK14720 transcript cleavage f 93.4 3.8 8.3E-05 33.9 14.7 96 53-150 171-268 (906)
142 KOG1128 Uncharacterized conser 93.4 1.3 2.8E-05 35.2 9.2 61 52-131 554-614 (777)
143 KOG1914 mRNA cleavage and poly 93.3 3 6.6E-05 32.3 12.9 124 8-132 347-500 (656)
144 COG5010 TadD Flp pilus assembl 93.3 1.9 4.1E-05 30.0 10.4 66 49-133 98-163 (257)
145 PRK15179 Vi polysaccharide bio 93.3 3.6 7.8E-05 33.1 14.1 80 34-134 104-184 (694)
146 PF13762 MNE1: Mitochondrial s 93.2 1.4 3E-05 28.0 12.1 99 40-151 26-127 (145)
147 KOG2076 RNA polymerase III tra 93.2 4 8.8E-05 33.3 13.7 143 4-147 253-457 (895)
148 PF13424 TPR_12: Tetratricopep 93.2 0.24 5.3E-06 27.2 4.0 57 3-79 16-74 (78)
149 PF12569 NARP1: NMDA receptor- 93.1 3.3 7.2E-05 32.0 13.9 84 53-138 196-296 (517)
150 PLN03088 SGT1, suppressor of 93.1 2.2 4.8E-05 31.2 9.8 73 59-151 10-82 (356)
151 PF07035 Mic1: Colon cancer-as 92.8 1.7 3.7E-05 28.2 11.8 87 36-130 14-115 (167)
152 PF12688 TPR_5: Tetratrico pep 92.8 1.4 3E-05 27.0 9.4 59 59-133 9-67 (120)
153 PF10602 RPN7: 26S proteasome 92.4 2.1 4.5E-05 28.1 9.3 64 52-131 37-100 (177)
154 KOG4340 Uncharacterized conser 92.3 2.3 4.9E-05 30.6 8.5 49 34-83 162-210 (459)
155 KOG2053 Mitochondrial inherita 92.2 2.9 6.3E-05 34.1 9.8 95 34-152 27-123 (932)
156 PRK10564 maltose regulon perip 92.2 0.55 1.2E-05 33.3 5.4 47 101-147 253-300 (303)
157 KOG4626 O-linked N-acetylgluco 91.9 5.4 0.00012 31.8 12.3 129 4-138 264-420 (966)
158 KOG2047 mRNA splicing factor [ 91.9 5.4 0.00012 31.8 12.6 98 52-151 170-293 (835)
159 COG5107 RNA14 Pre-mRNA 3'-end 91.9 0.48 1E-05 35.7 5.1 61 50-128 396-456 (660)
160 PF13374 TPR_10: Tetratricopep 91.7 0.56 1.2E-05 22.0 3.9 28 105-132 3-30 (42)
161 PF04840 Vps16_C: Vps16, C-ter 91.7 2.3 4.9E-05 30.7 8.3 28 48-75 205-232 (319)
162 PF13428 TPR_14: Tetratricopep 91.7 0.85 1.8E-05 22.1 4.6 28 106-133 3-30 (44)
163 KOG4570 Uncharacterized conser 91.7 1.5 3.2E-05 31.7 7.0 47 34-80 118-164 (418)
164 KOG1070 rRNA processing protei 91.6 5.6 0.00012 34.5 11.0 145 4-152 1470-1647(1710)
165 PF11663 Toxin_YhaV: Toxin wit 90.9 0.31 6.7E-06 30.3 2.8 32 63-114 107-138 (140)
166 PRK11189 lipoprotein NlpI; Pro 90.9 4.4 9.5E-05 28.8 12.9 80 34-133 82-161 (296)
167 KOG3060 Uncharacterized conser 90.7 4.3 9.4E-05 28.4 14.4 126 5-133 25-183 (289)
168 KOG1915 Cell cycle control pro 90.5 6.5 0.00014 30.2 10.9 52 34-89 159-210 (677)
169 PLN03098 LPA1 LOW PSII ACCUMUL 90.4 4.2 9.1E-05 30.8 8.7 78 34-119 93-176 (453)
170 KOG4570 Uncharacterized conser 90.3 2.2 4.7E-05 30.9 6.8 93 41-133 54-164 (418)
171 PRK10866 outer membrane biogen 90.1 4.7 0.0001 27.9 13.0 57 4-62 44-115 (243)
172 KOG4626 O-linked N-acetylgluco 90.0 8.5 0.00019 30.7 11.2 74 4-81 230-316 (966)
173 KOG4077 Cytochrome c oxidase, 89.4 3.6 7.8E-05 25.5 9.6 57 90-147 70-126 (149)
174 PF02284 COX5A: Cytochrome c o 89.4 2.8 6E-05 24.9 5.8 45 36-80 30-74 (108)
175 CHL00033 ycf3 photosystem I as 89.3 4.1 8.9E-05 26.1 10.3 78 34-130 53-139 (168)
176 smart00299 CLH Clathrin heavy 89.0 3.8 8.2E-05 25.3 11.8 29 118-152 110-138 (140)
177 TIGR03504 FimV_Cterm FimV C-te 88.6 1.3 2.7E-05 21.9 3.5 25 57-81 5-29 (44)
178 KOG2796 Uncharacterized conser 88.2 7.3 0.00016 27.6 9.9 108 34-143 195-323 (366)
179 PRK02603 photosystem I assembl 88.2 5.1 0.00011 25.8 14.2 47 34-80 53-101 (172)
180 PF09205 DUF1955: Domain of un 88.2 4.7 0.0001 25.4 12.3 113 5-136 15-152 (161)
181 PF11848 DUF3368: Domain of un 88.2 2.2 4.7E-05 21.4 4.9 40 108-148 7-46 (48)
182 PF13414 TPR_11: TPR repeat; P 88.1 2.6 5.7E-05 22.3 5.5 45 104-150 3-48 (69)
183 PF07721 TPR_4: Tetratricopept 87.9 1.3 2.8E-05 18.8 3.0 22 54-75 4-25 (26)
184 COG3063 PilF Tfp pilus assembl 87.7 7.2 0.00016 26.9 13.0 124 2-147 79-215 (250)
185 PF13170 DUF4003: Protein of u 87.5 8.5 0.00018 27.6 11.4 112 8-119 119-252 (297)
186 cd00923 Cyt_c_Oxidase_Va Cytoc 87.4 4.2 9.2E-05 23.9 5.7 44 36-79 27-70 (103)
187 COG5107 RNA14 Pre-mRNA 3'-end 86.6 13 0.00028 28.6 12.5 111 34-149 415-545 (660)
188 PF14689 SPOB_a: Sensor_kinase 86.2 1.7 3.6E-05 23.2 3.4 31 49-79 21-51 (62)
189 KOG0495 HAT repeat protein [RN 86.2 16 0.00035 29.4 13.1 44 34-78 602-645 (913)
190 KOG1128 Uncharacterized conser 86.1 9.4 0.0002 30.7 8.4 35 100-134 548-583 (777)
191 PRK13342 recombination factor 85.9 13 0.00027 27.9 13.3 111 34-149 155-275 (413)
192 PF00515 TPR_1: Tetratricopept 85.8 2.2 4.7E-05 19.1 4.4 29 52-80 2-30 (34)
193 PF04840 Vps16_C: Vps16, C-ter 85.7 6.4 0.00014 28.5 7.1 90 4-127 189-285 (319)
194 KOG4162 Predicted calmodulin-b 85.5 18 0.00039 29.4 11.8 107 3-130 276-383 (799)
195 PF12926 MOZART2: Mitotic-spin 85.5 5 0.00011 23.0 6.3 54 50-105 9-62 (88)
196 PF10579 Rapsyn_N: Rapsyn N-te 85.3 4.9 0.00011 22.6 5.8 54 58-128 14-67 (80)
197 KOG3616 Selective LIM binding 85.0 6 0.00013 32.2 7.1 25 106-130 793-817 (1636)
198 PRK10564 maltose regulon perip 84.7 2.9 6.3E-05 29.8 4.9 41 47-87 252-293 (303)
199 PF13174 TPR_6: Tetratricopept 84.7 1.9 4.1E-05 18.9 2.9 24 57-80 6-29 (33)
200 KOG0985 Vesicle coat protein c 84.5 25 0.00054 30.1 11.5 27 106-132 1135-1161(1666)
201 PF13929 mRNA_stabil: mRNA sta 84.4 13 0.00027 26.6 9.2 64 90-153 187-252 (292)
202 COG3629 DnrI DNA-binding trans 84.3 12 0.00027 26.5 8.4 59 37-96 174-237 (280)
203 PRK14720 transcript cleavage f 84.3 23 0.00051 29.6 11.0 81 52-133 117-198 (906)
204 KOG1125 TPR repeat-containing 84.2 17 0.00037 28.4 8.9 80 34-132 412-492 (579)
205 PF14938 SNAP: Soluble NSF att 83.7 13 0.00028 26.2 11.1 82 52-133 95-184 (282)
206 COG4235 Cytochrome c biogenesi 83.2 14 0.00031 26.3 10.9 99 48-148 153-269 (287)
207 KOG1585 Protein required for f 82.8 14 0.0003 26.0 10.6 146 2-151 41-240 (308)
208 PF13431 TPR_17: Tetratricopep 82.6 2 4.3E-05 19.7 2.4 24 49-72 11-34 (34)
209 TIGR03504 FimV_Cterm FimV C-te 82.6 4.1 8.8E-05 20.1 3.6 25 110-134 5-29 (44)
210 PRK10153 DNA-binding transcrip 82.0 22 0.00048 27.7 13.8 105 45-153 331-467 (517)
211 PRK10803 tol-pal system protei 81.3 16 0.00035 25.6 9.5 66 51-132 143-208 (263)
212 KOG1174 Anaphase-promoting com 81.1 22 0.00047 27.0 11.7 124 2-130 242-394 (564)
213 KOG2376 Signal recognition par 81.1 25 0.00055 27.8 13.1 101 51-152 376-505 (652)
214 PF13181 TPR_8: Tetratricopept 80.7 3.9 8.3E-05 18.1 4.4 28 52-79 2-29 (34)
215 PF14669 Asp_Glu_race_2: Putat 80.1 8.4 0.00018 25.9 5.3 70 55-129 136-206 (233)
216 PF14689 SPOB_a: Sensor_kinase 80.0 3.7 8E-05 21.8 3.2 25 108-132 27-51 (62)
217 PF13512 TPR_18: Tetratricopep 79.9 13 0.00028 23.6 7.6 72 61-149 20-92 (142)
218 COG4455 ImpE Protein of avirul 79.7 18 0.00038 25.0 7.9 77 53-148 3-81 (273)
219 KOG3785 Uncharacterized conser 79.4 23 0.00051 26.4 9.5 28 103-130 426-454 (557)
220 PF11846 DUF3366: Domain of un 79.4 13 0.00029 24.5 6.4 33 47-79 140-172 (193)
221 PF13525 YfiO: Outer membrane 79.4 16 0.00034 24.4 8.6 57 59-132 13-70 (203)
222 PF04184 ST7: ST7 protein; In 79.3 27 0.00059 27.1 9.4 59 55-130 263-321 (539)
223 PF09868 DUF2095: Uncharacteri 78.7 12 0.00025 22.8 5.2 40 109-149 66-105 (128)
224 KOG2114 Vacuolar assembly/sort 78.7 11 0.00023 31.0 6.4 123 3-131 379-517 (933)
225 KOG2796 Uncharacterized conser 77.8 23 0.00049 25.3 7.3 73 54-144 180-252 (366)
226 PF10366 Vps39_1: Vacuolar sor 77.7 13 0.00027 22.3 7.1 27 106-132 41-67 (108)
227 KOG1125 TPR repeat-containing 77.6 33 0.00071 27.0 15.1 139 3-145 296-470 (579)
228 PRK14956 DNA polymerase III su 77.4 31 0.00068 26.7 11.1 98 36-140 186-284 (484)
229 PRK13341 recombination factor 77.2 39 0.00084 27.7 12.4 101 46-149 192-303 (725)
230 COG4235 Cytochrome c biogenesi 77.1 24 0.00052 25.2 8.7 78 2-81 166-257 (287)
231 KOG2376 Signal recognition par 76.7 36 0.00077 27.0 12.7 76 54-130 113-201 (652)
232 PF07719 TPR_2: Tetratricopept 76.6 5.4 0.00012 17.5 4.4 28 53-80 3-30 (34)
233 PRK15331 chaperone protein Sic 76.3 18 0.0004 23.5 8.6 60 54-132 74-133 (165)
234 COG0735 Fur Fe2+/Zn2+ uptake r 76.1 17 0.00037 23.0 6.5 64 71-153 6-69 (145)
235 cd07153 Fur_like Ferric uptake 75.9 8.1 0.00018 23.0 4.3 44 110-153 6-49 (116)
236 PF11663 Toxin_YhaV: Toxin wit 75.8 3.2 7E-05 25.9 2.5 35 113-149 104-138 (140)
237 PF00637 Clathrin: Region in C 75.5 7.4 0.00016 24.1 4.2 104 37-152 28-138 (143)
238 PF10579 Rapsyn_N: Rapsyn N-te 75.1 13 0.00027 21.0 4.5 42 34-75 24-67 (80)
239 PF09613 HrpB1_HrpK: Bacterial 75.1 20 0.00043 23.2 8.3 64 52-134 8-74 (160)
240 PF10300 DUF3808: Protein of u 74.9 36 0.00078 26.1 10.3 83 35-134 252-335 (468)
241 PRK04841 transcriptional regul 74.2 49 0.0011 27.4 10.2 27 106-132 614-640 (903)
242 TIGR02561 HrpB1_HrpK type III 74.0 21 0.00045 22.9 8.7 67 62-150 21-87 (153)
243 PRK11639 zinc uptake transcrip 73.0 23 0.00049 23.0 6.8 60 41-101 16-76 (169)
244 smart00299 CLH Clathrin heavy 72.5 16 0.00035 22.4 5.2 74 69-152 9-82 (140)
245 PF14938 SNAP: Soluble NSF att 72.1 32 0.00068 24.3 11.6 87 52-151 156-247 (282)
246 KOG0548 Molecular co-chaperone 71.8 46 0.00099 26.0 10.3 100 4-148 14-113 (539)
247 COG5108 RPO41 Mitochondrial DN 70.8 40 0.00086 27.5 7.6 74 56-148 33-112 (1117)
248 PF13281 DUF4071: Domain of un 70.7 42 0.0009 25.1 10.7 98 37-149 124-227 (374)
249 KOG0547 Translocase of outer m 70.7 49 0.0011 25.8 9.9 30 103-132 461-490 (606)
250 PRK08691 DNA polymerase III su 70.6 57 0.0012 26.6 11.3 88 43-138 192-279 (709)
251 PF10366 Vps39_1: Vacuolar sor 70.3 8.4 0.00018 23.0 3.3 28 52-79 40-67 (108)
252 KOG3616 Selective LIM binding 70.1 36 0.00079 28.1 7.4 69 4-77 744-817 (1636)
253 PF01475 FUR: Ferric uptake re 70.0 7.8 0.00017 23.4 3.2 46 108-153 11-56 (120)
254 PF09454 Vps23_core: Vps23 cor 69.2 16 0.00035 19.7 4.8 51 100-151 4-54 (65)
255 PF08542 Rep_fac_C: Replicatio 69.0 18 0.0004 20.3 6.5 47 51-98 5-51 (89)
256 COG0735 Fur Fe2+/Zn2+ uptake r 68.7 27 0.00058 22.1 7.3 63 38-101 8-71 (145)
257 PF00637 Clathrin: Region in C 68.5 1 2.2E-05 28.0 -1.0 32 56-87 12-43 (143)
258 KOG2047 mRNA splicing factor [ 68.3 63 0.0014 26.2 15.8 142 3-145 398-590 (835)
259 KOG0985 Vesicle coat protein c 68.2 62 0.0013 28.0 8.4 40 49-88 1131-1170(1666)
260 PRK14958 DNA polymerase III su 67.9 56 0.0012 25.5 11.9 92 42-141 191-282 (509)
261 PRK15331 chaperone protein Sic 67.8 31 0.00067 22.5 5.7 53 61-132 47-99 (165)
262 PF01475 FUR: Ferric uptake re 67.5 18 0.00039 21.7 4.5 47 54-100 10-57 (120)
263 PRK15363 pathogenicity island 67.2 31 0.00068 22.3 8.5 64 52-134 36-99 (157)
264 KOG3060 Uncharacterized conser 67.0 42 0.00092 23.7 12.4 74 5-80 99-183 (289)
265 PF11846 DUF3366: Domain of un 66.6 34 0.00074 22.5 7.4 34 99-132 139-172 (193)
266 COG4003 Uncharacterized protei 66.5 15 0.00033 20.9 3.5 27 56-82 36-62 (98)
267 cd07153 Fur_like Ferric uptake 66.4 25 0.00053 20.9 4.9 45 56-100 5-50 (116)
268 PF07035 Mic1: Colon cancer-as 66.3 34 0.00073 22.3 10.1 119 12-134 14-150 (167)
269 COG4003 Uncharacterized protei 66.2 22 0.00048 20.2 4.7 26 109-134 36-61 (98)
270 smart00028 TPR Tetratricopepti 65.9 8.9 0.00019 15.5 3.5 27 53-79 3-29 (34)
271 KOG0543 FKBP-type peptidyl-pro 65.8 55 0.0012 24.6 8.7 77 50-147 256-332 (397)
272 PF10602 RPN7: 26S proteasome 65.3 17 0.00036 23.8 4.2 34 105-138 37-70 (177)
273 PF13281 DUF4071: Domain of un 65.1 56 0.0012 24.4 12.4 128 5-134 195-335 (374)
274 PRK11906 transcriptional regul 64.8 62 0.0014 24.9 13.2 105 8-132 274-400 (458)
275 PRK11639 zinc uptake transcrip 64.5 36 0.00079 22.1 5.7 45 109-153 30-74 (169)
276 PF13929 mRNA_stabil: mRNA sta 63.8 52 0.0011 23.6 9.5 90 46-152 197-291 (292)
277 TIGR03184 DNA_S_dndE DNA sulfu 63.7 29 0.00063 20.7 5.4 85 68-152 5-97 (105)
278 PRK07764 DNA polymerase III su 63.3 89 0.0019 26.1 10.7 87 44-137 194-280 (824)
279 KOG1127 TPR repeat-containing 63.0 99 0.0021 26.6 10.7 97 34-133 510-625 (1238)
280 cd07229 Pat_TGL3_like Triacylg 62.8 64 0.0014 24.3 9.3 116 36-151 99-249 (391)
281 PF09868 DUF2095: Uncharacteri 62.5 33 0.00071 20.9 5.4 27 56-82 66-92 (128)
282 COG3898 Uncharacterized membra 62.5 67 0.0015 24.4 13.7 129 5-137 133-296 (531)
283 PF13762 MNE1: Mitochondrial s 62.4 38 0.00082 21.6 6.2 39 49-87 77-116 (145)
284 PLN02789 farnesyltranstransfer 62.3 58 0.0013 23.7 14.4 41 102-143 140-180 (320)
285 PF12926 MOZART2: Mitotic-spin 62.3 28 0.00061 20.0 5.7 45 36-80 28-72 (88)
286 PF02847 MA3: MA3 domain; Int 61.3 28 0.00061 20.5 4.5 63 54-118 5-67 (113)
287 PRK14951 DNA polymerase III su 61.2 86 0.0019 25.2 12.3 88 43-138 197-284 (618)
288 KOG0991 Replication factor C, 61.1 56 0.0012 23.1 8.0 41 99-140 234-274 (333)
289 PF13525 YfiO: Outer membrane 60.5 47 0.001 22.1 9.7 19 3-21 16-34 (203)
290 KOG4077 Cytochrome c oxidase, 60.2 40 0.00087 21.1 5.8 47 34-80 67-113 (149)
291 COG2137 OraA Uncharacterized p 59.9 47 0.001 21.9 10.8 106 36-149 38-147 (174)
292 PRK10866 outer membrane biogen 59.9 55 0.0012 22.6 11.4 61 57-133 38-98 (243)
293 KOG1915 Cell cycle control pro 59.4 84 0.0018 24.6 14.4 92 50-143 106-211 (677)
294 cd00280 TRFH Telomeric Repeat 58.7 53 0.0011 22.0 10.7 48 34-81 87-141 (200)
295 PRK09462 fur ferric uptake reg 58.3 44 0.00096 21.0 7.4 61 40-101 6-68 (148)
296 PF12796 Ank_2: Ankyrin repeat 58.1 30 0.00066 19.1 4.6 47 34-85 37-86 (89)
297 KOG1156 N-terminal acetyltrans 58.0 1E+02 0.0022 25.0 11.4 38 48-87 366-405 (700)
298 PF14840 DNA_pol3_delt_C: Proc 57.8 29 0.00063 21.3 4.1 40 5-44 10-49 (125)
299 COG5210 GTPase-activating prot 57.6 88 0.0019 24.3 13.5 131 9-139 320-481 (496)
300 PRK05225 ketol-acid reductoiso 57.6 38 0.00082 26.1 5.3 22 74-95 372-393 (487)
301 KOG0548 Molecular co-chaperone 57.2 93 0.002 24.4 12.4 78 1-81 307-388 (539)
302 smart00804 TAP_C C-terminal do 57.1 20 0.00043 19.2 2.9 21 64-84 38-58 (63)
303 PF14840 DNA_pol3_delt_C: Proc 56.5 33 0.00071 21.1 4.2 29 64-92 10-38 (125)
304 PF11207 DUF2989: Protein of u 56.1 61 0.0013 22.0 11.5 76 34-125 124-199 (203)
305 KOG2280 Vacuolar assembly/sort 55.3 55 0.0012 26.9 6.0 19 109-127 775-793 (829)
306 PLN03025 replication factor C 55.3 76 0.0017 22.8 11.9 97 36-141 164-261 (319)
307 KOG3617 WD40 and TPR repeat-co 54.1 42 0.00091 28.2 5.3 33 102-134 1328-1360(1416)
308 PF03745 DUF309: Domain of unk 53.4 34 0.00073 18.2 5.4 49 61-127 9-62 (62)
309 PF07079 DUF1347: Protein of u 52.4 1.1E+02 0.0024 23.8 11.7 138 4-151 18-179 (549)
310 KOG1538 Uncharacterized conser 52.0 82 0.0018 25.7 6.4 16 114-129 642-657 (1081)
311 PF09205 DUF1955: Domain of un 51.8 60 0.0013 20.6 5.7 46 37-83 107-152 (161)
312 PRK12357 glutaminase; Reviewed 51.7 94 0.002 22.8 8.0 112 22-137 97-227 (326)
313 PF08461 HTH_12: Ribonuclease 51.3 38 0.00082 18.2 3.4 12 123-134 35-46 (66)
314 PF05664 DUF810: Protein of un 50.8 1.4E+02 0.003 24.5 8.8 70 46-130 212-289 (677)
315 PF04184 ST7: ST7 protein; In 50.8 1.2E+02 0.0026 23.8 10.2 46 34-79 277-323 (539)
316 smart00777 Mad3_BUB1_I Mad3/BU 50.1 60 0.0013 20.1 4.8 44 68-128 80-123 (125)
317 PF14162 YozD: YozD-like prote 49.4 36 0.00079 17.4 4.3 29 121-149 12-48 (57)
318 PRK05907 hypothetical protein; 48.1 1E+02 0.0023 22.3 10.2 94 41-139 146-240 (311)
319 PF15469 Sec5: Exocyst complex 47.7 77 0.0017 20.7 6.0 85 55-142 90-177 (182)
320 PF11207 DUF2989: Protein of u 46.6 90 0.002 21.2 7.3 63 9-71 123-198 (203)
321 KOG1147 Glutamyl-tRNA syntheta 46.5 96 0.0021 24.6 5.9 66 14-79 255-331 (712)
322 KOG2908 26S proteasome regulat 46.1 1.2E+02 0.0026 22.5 9.4 70 55-140 79-156 (380)
323 TIGR03814 Gln_ase glutaminase 46.0 1.1E+02 0.0025 22.1 6.6 111 22-137 81-211 (300)
324 COG1729 Uncharacterized protei 46.0 1.1E+02 0.0023 21.8 9.9 61 56-133 183-244 (262)
325 PRK12356 glutaminase; Reviewed 45.9 1.2E+02 0.0025 22.2 6.5 111 22-137 93-222 (319)
326 smart00164 TBC Domain in Tre-2 45.8 84 0.0018 20.5 5.9 45 37-81 152-197 (199)
327 PF03943 TAP_C: TAP C-terminal 45.4 6.6 0.00014 20.0 -0.1 21 7-27 28-49 (51)
328 PRK14963 DNA polymerase III su 43.6 1.6E+02 0.0034 23.1 11.8 96 34-138 179-275 (504)
329 PF05944 Phage_term_smal: Phag 43.3 82 0.0018 19.7 5.5 30 106-135 50-79 (132)
330 PF14853 Fis1_TPR_C: Fis1 C-te 43.3 47 0.001 17.0 5.3 31 57-89 7-37 (53)
331 COG1729 Uncharacterized protei 43.2 1.2E+02 0.0026 21.5 6.4 60 52-132 143-206 (262)
332 COG2987 HutU Urocanate hydrata 42.8 23 0.00049 27.1 2.2 62 64-125 216-286 (561)
333 PF11817 Foie-gras_1: Foie gra 42.5 1.1E+02 0.0025 21.1 6.7 59 55-130 182-244 (247)
334 TIGR03581 EF_0839 conserved hy 42.1 83 0.0018 21.7 4.5 65 50-131 162-235 (236)
335 PF04124 Dor1: Dor1-like famil 41.9 54 0.0012 24.0 4.1 39 107-145 109-148 (338)
336 PF10963 DUF2765: Protein of u 41.8 54 0.0012 18.7 3.2 32 100-131 12-43 (83)
337 PF04124 Dor1: Dor1-like famil 41.2 40 0.00087 24.6 3.3 34 55-88 110-144 (338)
338 TIGR01529 argR_whole arginine 41.2 55 0.0012 20.8 3.6 38 110-147 6-43 (146)
339 PHA02875 ankyrin repeat protei 40.3 1.1E+02 0.0024 22.7 5.6 45 90-138 182-229 (413)
340 PF02184 HAT: HAT (Half-A-TPR) 40.1 41 0.00089 15.3 2.5 23 7-31 2-24 (32)
341 cd00280 TRFH Telomeric Repeat 40.1 1.1E+02 0.0025 20.5 7.7 25 108-132 115-139 (200)
342 KOG4648 Uncharacterized conser 40.0 1.3E+02 0.0028 22.6 5.6 22 110-131 164-185 (536)
343 KOG4567 GTPase-activating prot 40.0 1.5E+02 0.0033 21.8 6.8 44 36-79 263-306 (370)
344 PRK09857 putative transposase; 38.9 1.5E+02 0.0032 21.3 8.3 66 55-139 210-275 (292)
345 KOG4555 TPR repeat-containing 38.7 1E+02 0.0023 19.6 9.4 84 34-134 61-145 (175)
346 PF14744 WASH-7_mid: WASH comp 38.6 1.6E+02 0.0035 21.8 6.5 25 119-143 281-305 (350)
347 PRK13713 conjugal transfer pro 38.5 94 0.002 19.0 6.0 45 95-144 16-61 (118)
348 cd08819 CARD_MDA5_2 Caspase ac 38.3 81 0.0018 18.2 7.1 68 34-125 20-87 (88)
349 KOG3617 WD40 and TPR repeat-co 38.3 2.6E+02 0.0056 24.0 8.4 30 50-79 756-785 (1416)
350 PRK08508 biotin synthase; Prov 38.3 66 0.0014 22.8 4.0 77 8-86 74-155 (279)
351 PRK14952 DNA polymerase III su 37.9 2.1E+02 0.0046 22.9 11.4 88 44-138 192-279 (584)
352 PF10300 DUF3808: Protein of u 37.7 1.9E+02 0.0041 22.3 11.3 75 5-81 246-335 (468)
353 PRK07003 DNA polymerase III su 37.7 2.5E+02 0.0054 23.7 12.0 97 34-138 182-279 (830)
354 smart00386 HAT HAT (Half-A-TPR 37.4 38 0.00082 14.1 4.0 29 118-147 1-29 (33)
355 PF13512 TPR_18: Tetratricopep 37.3 1.1E+02 0.0024 19.4 9.1 32 50-81 46-77 (142)
356 PF04053 Coatomer_WDAD: Coatom 37.3 1.9E+02 0.0042 22.2 7.2 77 48-130 344-428 (443)
357 KOG0495 HAT repeat protein [RN 37.1 2.4E+02 0.0052 23.3 15.0 39 103-143 617-655 (913)
358 KOG1130 Predicted G-alpha GTPa 36.5 63 0.0014 24.8 3.6 61 53-128 17-79 (639)
359 COG3825 Uncharacterized protei 36.4 1.7E+02 0.0038 21.5 5.8 58 36-94 3-60 (393)
360 PF15469 Sec5: Exocyst complex 36.1 1.2E+02 0.0027 19.7 6.1 23 65-87 153-175 (182)
361 KOG2041 WD40 repeat protein [G 36.0 2.6E+02 0.0056 23.4 10.0 76 50-130 808-891 (1189)
362 KOG1174 Anaphase-promoting com 35.9 2.1E+02 0.0045 22.2 12.6 102 47-151 228-380 (564)
363 PRK00971 glutaminase; Provisio 35.8 1.7E+02 0.0037 21.3 7.8 111 22-137 88-218 (307)
364 PRK09111 DNA polymerase III su 35.8 2.3E+02 0.0051 22.8 10.5 87 44-138 206-292 (598)
365 PRK12928 lipoyl synthase; Prov 35.2 91 0.002 22.3 4.3 31 102-134 202-232 (290)
366 PHA02875 ankyrin repeat protei 35.1 1.9E+02 0.0041 21.5 6.6 61 15-75 18-89 (413)
367 PRK06645 DNA polymerase III su 34.6 2.3E+02 0.0049 22.3 11.0 100 34-139 191-292 (507)
368 COG2987 HutU Urocanate hydrata 34.6 49 0.0011 25.4 2.9 67 5-74 216-288 (561)
369 PRK06585 holA DNA polymerase I 34.4 1.8E+02 0.0039 21.1 10.6 92 41-138 154-245 (343)
370 KOG2114 Vacuolar assembly/sort 33.8 1.7E+02 0.0037 24.6 5.8 27 103-129 735-761 (933)
371 PRK14970 DNA polymerase III su 33.7 1.9E+02 0.0042 21.2 11.6 95 43-147 181-276 (367)
372 PRK14953 DNA polymerase III su 33.7 2.3E+02 0.005 22.1 10.4 87 44-138 193-279 (486)
373 COG3947 Response regulator con 33.5 1.7E+02 0.0037 21.4 5.2 46 106-152 281-326 (361)
374 TIGR01228 hutU urocanate hydra 33.5 44 0.00095 26.0 2.5 64 64-127 207-279 (545)
375 PF04762 IKI3: IKI3 family; I 33.3 3.1E+02 0.0068 23.5 10.5 47 34-80 793-843 (928)
376 PRK05414 urocanate hydratase; 33.2 43 0.00094 26.1 2.4 64 64-127 216-288 (556)
377 KOG1166 Mitotic checkpoint ser 33.1 2.9E+02 0.0064 23.8 7.2 62 62-140 89-150 (974)
378 TIGR02397 dnaX_nterm DNA polym 33.1 1.9E+02 0.0041 20.9 10.8 38 108-147 248-285 (355)
379 cd08315 Death_TRAILR_DR4_DR5 D 33.0 1E+02 0.0023 17.9 3.6 32 50-81 63-94 (96)
380 COG1466 HolA DNA polymerase II 32.7 2E+02 0.0043 21.0 14.5 134 6-147 114-250 (334)
381 KOG1156 N-terminal acetyltrans 32.4 2.8E+02 0.006 22.7 13.8 95 50-146 142-259 (700)
382 PF07575 Nucleopor_Nup85: Nup8 32.2 1.3E+02 0.0029 23.7 5.1 77 36-132 390-466 (566)
383 PRK14962 DNA polymerase III su 32.2 2.4E+02 0.0052 21.9 11.8 93 44-144 191-283 (472)
384 TIGR02328 conserved hypothetic 32.2 50 0.0011 20.1 2.1 18 11-28 54-71 (120)
385 PF07443 HARP: HepA-related pr 32.2 15 0.00032 19.2 -0.0 26 6-31 6-31 (55)
386 KOG2280 Vacuolar assembly/sort 31.9 1.5E+02 0.0033 24.6 5.2 82 46-131 679-771 (829)
387 PF07261 DnaB_2: Replication i 31.6 90 0.002 16.8 4.4 16 120-135 50-65 (77)
388 PRK00847 thyX FAD-dependent th 31.6 1E+02 0.0022 20.9 3.9 82 67-150 130-214 (217)
389 PF12029 DUF3516: Domain of un 31.5 2.5E+02 0.0053 21.8 6.5 80 21-135 28-111 (461)
390 PF02607 B12-binding_2: B12 bi 31.5 55 0.0012 17.8 2.3 32 117-148 14-45 (79)
391 COG3294 HD supefamily hydrolas 31.4 41 0.0009 23.3 1.9 19 122-140 68-86 (269)
392 PRK14950 DNA polymerase III su 31.1 2.8E+02 0.006 22.2 9.8 86 45-138 195-280 (585)
393 PRK10292 hypothetical protein; 30.9 94 0.002 16.8 6.8 59 65-130 2-60 (69)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 30.7 1.3E+02 0.0029 18.4 8.2 44 69-129 81-124 (126)
395 cd08326 CARD_CASP9 Caspase act 30.5 1.1E+02 0.0024 17.4 7.2 33 116-152 42-74 (84)
396 smart00843 Ftsk_gamma This dom 29.5 99 0.0021 16.6 3.6 28 108-136 22-49 (63)
397 COG2405 Predicted nucleic acid 29.5 1.5E+02 0.0033 18.9 4.0 45 104-149 110-154 (157)
398 PRK14135 recX recombination re 29.2 2E+02 0.0044 20.0 9.5 38 90-129 127-164 (263)
399 KOG1538 Uncharacterized conser 29.1 3.4E+02 0.0073 22.6 10.1 39 35-76 619-657 (1081)
400 PF04960 Glutaminase: Glutamin 29.0 2.2E+02 0.0049 20.5 5.9 111 22-137 67-197 (286)
401 PRK09462 fur ferric uptake reg 28.9 1.5E+02 0.0033 18.6 6.7 45 109-153 21-66 (148)
402 PF11491 DUF3213: Protein of u 28.8 19 0.00042 20.4 0.1 24 97-120 17-40 (88)
403 PF06552 TOM20_plant: Plant sp 28.7 1.8E+02 0.004 19.4 7.6 81 52-151 29-125 (186)
404 PHA02148 hypothetical protein 28.6 1.2E+02 0.0027 17.5 3.2 41 17-58 13-57 (110)
405 PF01471 PG_binding_1: Putativ 28.5 79 0.0017 15.9 2.4 16 68-85 31-46 (57)
406 PF07304 SRA1: Steroid recepto 28.4 1.7E+02 0.0036 18.9 4.9 46 35-80 73-119 (157)
407 PF07079 DUF1347: Protein of u 28.0 1.6E+02 0.0034 23.0 4.5 35 55-89 132-170 (549)
408 KOG4334 Uncharacterized conser 27.8 23 0.00049 27.4 0.3 63 54-117 493-573 (650)
409 PRK14960 DNA polymerase III su 27.8 3.5E+02 0.0076 22.4 12.3 87 44-138 192-278 (702)
410 PF09613 HrpB1_HrpK: Bacterial 27.4 1.8E+02 0.0039 18.9 9.6 21 61-81 54-74 (160)
411 PF12862 Apc5: Anaphase-promot 27.4 1.3E+02 0.0028 17.2 6.5 58 61-132 8-69 (94)
412 PF09477 Type_III_YscG: Bacter 27.3 1.5E+02 0.0033 18.0 8.1 83 34-142 24-106 (116)
413 COG3947 Response regulator con 27.3 2.6E+02 0.0055 20.6 8.5 72 54-144 282-358 (361)
414 smart00544 MA3 Domain in DAP-5 26.9 1.4E+02 0.0031 17.5 8.5 64 54-119 5-68 (113)
415 TIGR02531 yecD_yerC TrpR-relat 26.8 1.3E+02 0.0029 17.2 3.5 25 106-130 4-28 (88)
416 PF09397 Ftsk_gamma: Ftsk gamm 26.8 1.1E+02 0.0025 16.4 3.9 29 107-136 22-50 (65)
417 PF13963 Transpos_assoc: Trans 26.7 58 0.0013 18.0 1.8 26 5-30 47-72 (77)
418 KOG1173 Anaphase-promoting com 26.6 3.4E+02 0.0074 21.8 13.8 75 4-79 256-340 (611)
419 TIGR02109 PQQ_syn_pqqE coenzym 26.4 1.9E+02 0.0042 21.1 4.9 68 13-83 72-147 (358)
420 COG3682 Predicted transcriptio 26.3 1.5E+02 0.0033 18.3 3.6 17 136-152 35-51 (123)
421 PLN02789 farnesyltranstransfer 26.3 2.6E+02 0.0057 20.4 14.1 46 36-82 128-173 (320)
422 PF03820 Mtc: Tricarboxylate c 25.5 2E+02 0.0043 21.0 4.6 14 106-119 111-124 (308)
423 TIGR02710 CRISPR-associated pr 25.5 2.2E+02 0.0048 21.5 4.9 39 112-150 138-176 (380)
424 PRK04841 transcriptional regul 25.2 4.1E+02 0.0088 22.2 11.9 66 53-132 533-601 (903)
425 PRK14961 DNA polymerase III su 25.2 2.9E+02 0.0062 20.4 12.1 87 45-139 194-280 (363)
426 KOG4230 C1-tetrahydrofolate sy 25.0 37 0.0008 27.1 1.0 78 33-112 450-530 (935)
427 KOG3364 Membrane protein invol 25.0 1.9E+02 0.0042 18.4 6.1 61 34-96 53-114 (149)
428 PRK14971 DNA polymerase III su 24.3 3.9E+02 0.0084 21.7 12.1 86 44-138 195-281 (614)
429 PRK14962 DNA polymerase III su 24.3 3.4E+02 0.0075 21.1 8.4 67 54-121 247-317 (472)
430 PHA02874 ankyrin repeat protei 24.2 3.1E+02 0.0068 20.6 6.6 37 34-71 46-85 (434)
431 KOG3598 Thyroid hormone recept 24.1 2.9E+02 0.0063 25.3 5.7 47 104-150 1078-1126(2220)
432 COG2812 DnaX DNA polymerase II 24.0 3.7E+02 0.008 21.3 7.5 100 34-141 182-282 (515)
433 PF07864 DUF1651: Protein of u 24.0 94 0.002 17.1 2.3 19 66-84 51-69 (75)
434 PF00772 DnaB: DnaB-like helic 23.8 1.5E+02 0.0033 16.8 8.2 60 86-146 41-101 (103)
435 smart00165 UBA Ubiquitin assoc 23.1 92 0.002 14.0 4.1 32 38-73 4-35 (37)
436 COG5108 RPO41 Mitochondrial DN 22.8 2.4E+02 0.0052 23.4 4.9 44 109-152 33-78 (1117)
437 TIGR00510 lipA lipoate synthas 22.4 2.1E+02 0.0046 20.7 4.3 31 102-134 205-235 (302)
438 PRK12356 glutaminase; Reviewed 22.3 96 0.0021 22.7 2.5 85 46-136 93-184 (319)
439 PRK07452 DNA polymerase III su 22.0 3.1E+02 0.0067 19.7 11.2 93 40-139 141-234 (326)
440 PF14744 WASH-7_mid: WASH comp 22.0 2.3E+02 0.0051 21.1 4.4 52 28-81 278-329 (350)
441 KOG1920 IkappaB kinase complex 22.0 3.4E+02 0.0074 24.0 5.7 21 109-129 1031-1051(1265)
442 COG0320 LipA Lipoate synthase 21.8 2.1E+02 0.0046 20.6 4.0 45 34-82 198-242 (306)
443 cd07230 Pat_TGL4-5_like Triacy 21.7 3.7E+02 0.0081 20.5 9.0 91 35-125 88-187 (421)
444 PHA00425 DNA packaging protein 21.6 1.7E+02 0.0037 16.6 4.9 46 8-54 15-60 (88)
445 PF09373 PMBR: Pseudomurein-bi 21.5 1E+02 0.0022 13.9 2.3 22 8-29 11-32 (33)
446 PF08568 Kinetochor_Ybp2: Unch 21.3 4.5E+02 0.0097 21.3 7.9 88 47-135 16-115 (633)
447 PF12968 DUF3856: Domain of Un 21.3 2.2E+02 0.0048 17.8 4.2 55 63-125 21-76 (144)
448 PRK07632 ribonucleotide-diphos 21.1 3.5E+02 0.0076 22.4 5.6 34 110-143 123-156 (699)
449 PF04097 Nic96: Nup93/Nic96; 21.0 1.9E+02 0.004 23.3 4.1 45 106-152 114-158 (613)
450 PF02840 Prp18: Prp18 domain; 21.0 2.4E+02 0.0052 18.0 4.4 46 34-79 42-87 (144)
451 PF08870 DUF1832: Domain of un 20.8 2.1E+02 0.0046 17.3 8.0 85 68-153 6-96 (113)
452 cd08790 DED_DEDD Death Effecto 20.7 2E+02 0.0043 17.0 3.3 21 62-82 35-55 (97)
453 PF15595 Imm31: Immunity prote 20.6 1.3E+02 0.0029 18.0 2.6 31 39-69 27-57 (107)
454 PF14066 DUF4256: Protein of u 20.6 47 0.001 21.5 0.6 20 70-89 34-53 (173)
455 PF00627 UBA: UBA/TS-N domain; 20.5 1.1E+02 0.0024 13.9 3.9 31 38-73 5-36 (37)
456 cd00215 PTS_IIA_lac PTS_IIA, P 20.4 1.2E+02 0.0025 17.8 2.2 19 61-79 25-43 (97)
457 PF07827 KNTase_C: KNTase C-te 20.4 2.5E+02 0.0053 17.9 5.2 36 50-85 58-93 (143)
458 smart00540 LEM in nuclear memb 20.4 1.1E+02 0.0023 15.1 1.8 21 12-32 9-29 (44)
459 PRK07914 hypothetical protein; 20.3 3.4E+02 0.0074 19.5 10.8 90 41-139 140-230 (320)
460 COG1608 Predicted archaeal kin 20.2 1E+02 0.0023 21.6 2.3 23 115-137 107-130 (252)
461 PRK07374 dnaE DNA polymerase I 20.1 6.3E+02 0.014 22.6 7.3 78 55-135 728-812 (1170)
462 KOG4334 Uncharacterized conser 20.1 1.2E+02 0.0026 23.7 2.7 31 34-64 543-573 (650)
463 PRK05301 pyrroloquinoline quin 20.1 3.7E+02 0.008 19.9 5.6 19 65-83 138-156 (378)
464 cd08332 CARD_CASP2 Caspase act 20.1 1.9E+02 0.0041 16.6 7.2 29 118-150 48-76 (90)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.98 E-value=5.3e-31 Score=207.19 Aligned_cols=152 Identities=24% Similarity=0.366 Sum_probs=101.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|++.|++++|.++|+.|.+.|++|+..+|+.+ +|.++|++|.+.|+.||..||+++|++|++.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 45556666666666666666666666666555 5666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 71 MELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.++|++|.+.|+.||..+| .++.+|...+..||..+||++|.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 6666666666666666555 44555666677777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHhhcCC
Q 047010 134 GKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 134 ~v~p~~~~~~~li~~~~~~g 153 (153)
|+.||..||+++|.+|++.|
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKD 768 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 77777777777777777654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.98 E-value=8e-31 Score=206.17 Aligned_cols=152 Identities=20% Similarity=0.328 Sum_probs=90.3
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|++.|++++|..+|+.|.+.|+.||..+|+.+ .|.++|++|.+.|+.||..||++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 55666666666666666666666666666655 5566666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCCchHHHH-----------------HHHHHHHH--cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 71 MELLNEAIERGVTPNVVTL-----------------IHLHNVID--IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.++|++|.+.|+.||..+| .++.+|.. .++.||.++|+++|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666666655 23333433 3455555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHhhcCC
Q 047010 132 EHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 132 ~~~v~p~~~~~~~li~~~~~~g 153 (153)
+.|+.|+..+|+++|.+|++.|
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcC
Confidence 5555555555555555555543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=6.6e-29 Score=191.02 Aligned_cols=148 Identities=20% Similarity=0.292 Sum_probs=85.9
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|++.|++++|.++|+.|.+ +|..+||.+ +|+++|++|.+.|+.||..||+++|.+|++.|++++|
T Consensus 269 y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 4555666666666665542 455566555 5666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCCchHHHHHHH-------------HHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010 71 MELLNEAIERGVTPNVVTLIHL-------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
.+++.+|.+.|+.||..+++.+ ..+++....||+++||+||.+|++.|+.++|.++|++|.+.|+.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6666666666666665554222 223333344555666666666666666666666666665556666
Q ss_pred CHHHHHHHHHHhhcCC
Q 047010 138 SRTLYDTLIKKLDQQP 153 (153)
Q Consensus 138 ~~~~~~~li~~~~~~g 153 (153)
|..||+++|.+|++.|
T Consensus 425 d~~T~~~ll~a~~~~g 440 (697)
T PLN03081 425 NHVTFLAVLSACRYSG 440 (697)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 6666666666655544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=4.3e-28 Score=186.54 Aligned_cols=149 Identities=22% Similarity=0.274 Sum_probs=118.1
Q ss_pred CccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
+|++.|++++|..+|++|.+.|++||..||+.+ .+.+++.+|.+.|+.||..+|++||++|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 578999999999999999999999999999987 778888888888888888777777777777777777
Q ss_pred HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|.++|++|.+ ||..+| .++.+|.+.|+.||.+||+++|.+|++.|.+++|.++|+.|.+
T Consensus 379 A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 7777777754 344444 5666677777777777777777777777777777777777754
Q ss_pred -CCCCCCHHHHHHHHHHhhcCC
Q 047010 133 -HGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 133 -~~v~p~~~~~~~li~~~~~~g 153 (153)
.|+.|+..+|+.+|++|++.|
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcC
Confidence 577777777777777777765
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=3e-27 Score=185.32 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHH-------------HHHHHHHcCC
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-------------HLHNVIDIGH 100 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~-------------~~~~~~~~~~ 100 (153)
+|+++|.+|...|+.||..||+++|.+|++.|+++.|.+++..|.+.|..||..+++ ....+++...
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 344444444444444444444444444444444444444444444444444444442 2233444555
Q ss_pred CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 67788888888888888888888888888888888888888888888887654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=1.1e-25 Score=176.58 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=122.2
Q ss_pred CccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
+|++.|++++|..+|.+|.+.|+.||..||+.+ .+.+++..|...|+.||..+||++|.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 478899999999999999999999999999988 678888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|.++|++|.. ||..+| .++.+|...|+.||..||+++|.+|++.|+++.|.+++..|.+
T Consensus 342 A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8888888753 344433 5666677778888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHhhcCC
Q 047010 133 HGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 133 ~~v~p~~~~~~~li~~~~~~g 153 (153)
.|+.|+..+|++||++|++.|
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcC
Confidence 888888888888888887765
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.78 E-value=7.2e-19 Score=91.40 Aligned_cols=50 Identities=34% Similarity=0.592 Sum_probs=48.9
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
||+++||++|++|++.|++++|.++|++|++.|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 88999999999999999999999999999999999999999999999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.72 E-value=2.9e-17 Score=85.33 Aligned_cols=50 Identities=40% Similarity=0.889 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHc
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 116 (153)
||.++||++|.+|++.|++++|+++|++|.+.|++||.. ||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~------------------Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSY------------------TYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHcC
Confidence 899999999999999999999999999999999987755 99999999986
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=3.3e-14 Score=101.33 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=122.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcC-------------------CCcc
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDG-------------------LKPD 50 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g-------------------~~~~ 50 (153)
..+.++.+..+|+.|+..|...++-.-..| .-++-|-.|...| .+..
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 357788899999999999877776544333 1122222232222 2347
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-------------HHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------------IHLHNVIDIGHIPRTITFNNVIQALCGV 117 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~li~~~~~~ 117 (153)
..||.+||.|.|+--..+.|.+++++-.......+..+| +++.+|....+.||..|+|+++++.++.
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 789999999999999999999999999988888888877 7888999999999999999999999999
Q ss_pred CcHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 118 GKIDK----ALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 118 g~~~~----a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
|+++. |++++.+|++-||.|+..+|..+|..++|.+
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 98875 5678889999999999999999999998864
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.40 E-value=4.7e-13 Score=63.39 Aligned_cols=34 Identities=47% Similarity=0.959 Sum_probs=32.3
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 45 ~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
+|+.||..|||+||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
No 11
>PF12854 PPR_1: PPR repeat
Probab=99.38 E-value=6.9e-13 Score=62.83 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=31.7
Q ss_pred cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
+|+.||.+|||++|++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4778999999999999999999999999999984
No 12
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.08 E-value=2.6e-10 Score=54.19 Aligned_cols=34 Identities=47% Similarity=1.021 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~ 85 (153)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 13
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.07 E-value=3.1e-10 Score=53.91 Aligned_cols=35 Identities=37% Similarity=0.694 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~ 139 (153)
++||++|.+|++.|++++|.++|++|++.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999973
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=8.2e-09 Score=74.33 Aligned_cols=88 Identities=17% Similarity=0.338 Sum_probs=76.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH----H
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE----V 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~----a 70 (153)
.|+--..+.|..++.+-.....+.+..+||.+ ....++.+|.+....||..|+|+++++.++.|+++. |
T Consensus 217 l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa 296 (625)
T KOG4422|consen 217 LCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA 296 (625)
T ss_pred HHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH
Confidence 34555678899999999888889999999988 556788899999999999999999999999997755 6
Q ss_pred HHHHHHHHHcCCCchHHHH
Q 047010 71 MELLNEAIERGVTPNVVTL 89 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~ 89 (153)
.+++.+|++-|+.|...+|
T Consensus 297 lqil~EmKeiGVePsLsSy 315 (625)
T KOG4422|consen 297 LQILGEMKEIGVEPSLSSY 315 (625)
T ss_pred HHHHHHHHHhCCCcchhhH
Confidence 6788899999999999988
No 15
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=99.03 E-value=5.2e-10 Score=52.88 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
++||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.00 E-value=7.7e-08 Score=69.89 Aligned_cols=46 Identities=20% Similarity=0.081 Sum_probs=23.3
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 34344455555555555555555555554443 35555555555443
No 17
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=99.00 E-value=1.1e-09 Score=51.76 Aligned_cols=33 Identities=33% Similarity=0.648 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP 84 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~ 84 (153)
.||+++|++|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999987
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.94 E-value=1.6e-07 Score=68.25 Aligned_cols=47 Identities=6% Similarity=0.106 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
.|...+.++.+. .+++..++..+...+.+.|++++|.++++.+.+.+
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 455555555443 12345556666666666666666666666665543
No 19
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.88 E-value=2.7e-09 Score=49.26 Aligned_cols=31 Identities=39% Similarity=0.907 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 82 (153)
+|||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999874
No 20
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.87 E-value=4e-09 Score=48.64 Aligned_cols=31 Identities=32% Similarity=0.626 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 21
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.65 E-value=8.4e-07 Score=58.85 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=85.8
Q ss_pred CCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHH
Q 047010 47 LKPDVYTYTAVMDGFCKV-----GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121 (153)
Q Consensus 47 ~~~~~~t~~~ll~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 121 (153)
-..|..+|..+|+.|.+. |+++-....++.|.+-|+.-|..+|+.+.+++-+|.-.....+.++.--|- .+.+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp--~Qq~ 120 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYP--RQQE 120 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCc--HHHH
Confidence 356889999999998764 788989999999999999999998888888887666555555555555443 3567
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 122 ~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
-|.+++++|...||.||..|+..|++.|.+.+
T Consensus 121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 89999999999999999999999999998754
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.58 E-value=1.6e-05 Score=62.90 Aligned_cols=115 Identities=9% Similarity=0.060 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVIDI 98 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~ 98 (153)
.+..+++.+.+.. +.+...+..+...+.+.|++++|.+.|+++...+-.++.... ..+..+..
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~- 764 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK- 764 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 4444444444442 234455555556666666666666666665554322211100 11122222
Q ss_pred CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 99 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
....+...+..+...|...|++++|...|+++.+.. .++...+..+...+.+
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 123456677777777777788888888887776654 3455566665555544
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.54 E-value=2.7e-05 Score=61.65 Aligned_cols=145 Identities=15% Similarity=0.122 Sum_probs=94.5
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
.+.|++++|...|..+.+.+ |+..++..+ ++.+.+.++.... +.+...+..+...|.+.|++++|.
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 34566666666666666543 333222222 5566666665543 346677888888888888888888
Q ss_pred HHHHHHHHcCCCchHHHHHH----------------HHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010 72 ELLNEAIERGVTPNVVTLIH----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 72 ~l~~~m~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
+.|+++.+.. +.+..++.. +...... ..-+..++..+...+.+.|++++|...|+++.+.+.
T Consensus 791 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 791 KHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888887654 233333311 1111211 112445677888889999999999999999988764
Q ss_pred CCCHHHHHHHHHHhhcCC
Q 047010 136 IPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 136 ~p~~~~~~~li~~~~~~g 153 (153)
. +..++..+...+.+.|
T Consensus 869 ~-~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 869 E-AAAIRYHLALALLATG 885 (899)
T ss_pred C-ChHHHHHHHHHHHHcC
Confidence 3 8889988988888765
No 24
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.46 E-value=1.2e-05 Score=48.07 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC--------cHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG--------KIDK 122 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~ 122 (153)
.|....|.-+...+++...-.+|+.+++.|+ .|+.. +|+.++.+.++.. +...
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~------------------~Yn~VL~Si~~R~lD~~~ie~kl~~ 87 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVE------------------LYNKVLKSIAKRELDSEDIENKLTN 87 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHH------------------HHHHHHHHHHHccccchhHHHHHHH
Confidence 3455667777777999999999999999998 56544 8888888887654 2346
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 123 a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
.+.+++.|...+++|+..||+.++..+.+
T Consensus 88 LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 88 LLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 77889999999999999999999988764
No 25
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.42 E-value=3.1e-06 Score=66.01 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=42.3
Q ss_pred HHHHHcCC-CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047010 93 HNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146 (153)
Q Consensus 93 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li 146 (153)
..+++... .|+..+|.+++.+-.-.|+.+.|..++.+|++.|+..+..-|..|+
T Consensus 192 l~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 192 LNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 33444444 4899999999999999999999999999999988766665444444
No 26
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=98.33 E-value=1.6e-05 Score=48.91 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
|..++.++|.++++.|+++....+++..- |+.++...-.-- .-......|+..+..+++.+|+..|++..|+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 56789999999999999999999997753 222221100000 011234579999999999999999999999999998
Q ss_pred HH-HCCCCCCHHHHHHHHHHhh
Q 047010 130 MY-EHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 130 m~-~~~v~p~~~~~~~li~~~~ 150 (153)
.. ..++.....+|..|++.+.
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH
Confidence 85 4689889999999998754
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.32 E-value=6.2e-07 Score=69.72 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH------HcCCCCcHhhHHHHH
Q 047010 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI------DIGHIPRTITFNNVI 111 (153)
Q Consensus 38 ~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~li 111 (153)
++-.+...|+.||.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.+..-- +.--.|...||+++.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 4566788899999999999999999999999999 999998888888877775554431 111257778999999
Q ss_pred HHHHccCcHHH
Q 047010 112 QALCGVGKIDK 122 (153)
Q Consensus 112 ~~~~~~g~~~~ 122 (153)
.+|..+||+..
T Consensus 91 ~ayr~hGDli~ 101 (1088)
T KOG4318|consen 91 KAYRIHGDLIL 101 (1088)
T ss_pred HHHHhccchHH
Confidence 99999998866
No 28
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.28 E-value=6.3e-06 Score=49.18 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGL-KPDVYTYTAVMDGFCKVG--------RSNEVMELLNEAIERGVTPNVVTLIHLHNV 95 (153)
Q Consensus 34 ~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~g--------~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~ 95 (153)
....+|+.+++.|+ -|+..+|+.++.+.++.. .+-+.+.+++.|...+++|+..+|+++...
T Consensus 43 ~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 43 IINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 44556666666666 667777777776665533 234566677777777777777777555443
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.26 E-value=0.00039 Score=46.28 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=94.8
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|...|++++|...++...+.. +.+...+..+ .|.+.+++..+.. +.+...+..+-..+...|++++|
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 456789999999999987753 2223333333 6777777776654 23556788888899999999999
Q ss_pred HHHHHHHHHcCCCchH-HHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 71 MELLNEAIERGVTPNV-VTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.+.+++.......+.. ..+ ..+...... ...+...+..+...+...|++++|...+++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998875322221 111 122222221 122456788888899999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHh
Q 047010 133 HGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 133 ~~v~p~~~~~~~li~~~ 149 (153)
. ...+...+..+...+
T Consensus 198 ~-~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 198 T-YNQTAESLWLGIRIA 213 (234)
T ss_pred h-CCCCHHHHHHHHHHH
Confidence 5 233445555444444
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.05 E-value=0.00017 Score=50.39 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=73.7
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
..+++++|..+.....+.. +++..+... .+.+++..+.+. ..+.+...|..+-..+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566777777766554432 333333222 555666665543 23467788888888999999999999
Q ss_pred HHHHHHHHcCCCchHHH-H-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 72 ELLNEAIERGVTPNVVT-L-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 72 ~l~~~m~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
+.+++..+. .|+... . ..+....... ..|...|..+..++...|+.++|+..|++..+.
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 999998775 343221 1 1222222222 455667889999999999999999999998764
Q ss_pred CCCCCHHHHHHHHHHhhcCC
Q 047010 134 GKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 134 ~v~p~~~~~~~li~~~~~~g 153 (153)
. +.|......+-+++.+.|
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAG 262 (280)
T ss_dssp S-TT-HHHHHHHHHHHT---
T ss_pred c-cccccccccccccccccc
Confidence 3 236666667766666554
No 31
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=8.9e-05 Score=54.60 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CchHHHH--------------HHHHHHHHcCCCCcHhh
Q 047010 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG----V-TPNVVTL--------------IHLHNVIDIGHIPRTIT 106 (153)
Q Consensus 46 g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~----~-~~~~~~~--------------~~~~~~~~~~~~~~~~~ 106 (153)
+.+.+......+++.+....+++.+.+++.+.+... + +.+..++ .++..-...|+-||.++
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334455566666666666666666666666555431 1 1111111 22233334566677889
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 107 ~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
+|.+|+.+.+.|++..|.++...|...+.-.+..|+..-+.+|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 999999999999999999999999888777888888888777754
No 32
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.01 E-value=4e-05 Score=51.05 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=37.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH---------------------------HHHHHHHHHHHcCCCccHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------EAYEMLMNVKNDGLKPDVYTYTA 56 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------------------~a~~~~~~m~~~g~~~~~~t~~~ 56 (153)
+.|+++=....+..|.+-|+.-|..+|+.| -+.+++++|...|+-||..|+..
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ 143 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQM 143 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345555555555666666666666666655 45566666666666666666666
Q ss_pred HHHHHHhcCC
Q 047010 57 VMDGFCKVGR 66 (153)
Q Consensus 57 ll~~~~~~g~ 66 (153)
+++.+++.+.
T Consensus 144 ll~iFG~~s~ 153 (228)
T PF06239_consen 144 LLNIFGRKSH 153 (228)
T ss_pred HHHHhccccH
Confidence 6666666554
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.93 E-value=0.0019 Score=47.57 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHc---CCCccHHHHHHHHHHHHh
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKND---GLKPDVYTYTAVMDGFCK 63 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~---g~~~~~~t~~~ll~~~~~ 63 (153)
|.+.|++++|..++..+.+.+..+ ......+ ...+.+.+..+. ..+.+......+...+.+
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 456789999999999999876442 2222211 001111111111 123477788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHH------------HHHHHHH--HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 64 VGRSNEVMELLNEAIERGVTPNVVTL------------IHLHNVI--DIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
.|+.++|.+++++..+. +|+.... ..+..+. .+...-|....-++-..+.+.+++++|...|+.
T Consensus 276 ~g~~~~A~~~L~~~l~~--~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR--QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999998874 4444422 1222221 122334556788889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
..+. .|+..++..+-..+.+.|
T Consensus 354 al~~--~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 354 ALKQ--RPDAYDYAWLADALDRLH 375 (398)
T ss_pred HHhc--CCCHHHHHHHHHHHHHcC
Confidence 8874 599999888888777654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.92 E-value=6.4e-05 Score=52.53 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=36.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhc-hHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
+.+.|++++|..++..-.....+|+...| ..+ .+...++++...+.. +...+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccc
Confidence 45678888888888654444323333333 222 555666666554332 44455555555 56667777
Q ss_pred HHHHHHHHHHcCCCchHHHH---------------HHHHHHHH-cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 70 VMELLNEAIERGVTPNVVTL---------------IHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
|.+++.+..+..-.|..... ..+..... .....|...|..+...+.+.|+.++|.+.+++..+.
T Consensus 96 A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 96 ALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 76666655443222221111 22222222 123456677888888888888888888888887664
Q ss_pred CCCCC-HHHHHHHHHHhhcC
Q 047010 134 GKIPS-RTLYDTLIKKLDQQ 152 (153)
Q Consensus 134 ~v~p~-~~~~~~li~~~~~~ 152 (153)
. |+ ......++..+...
T Consensus 176 ~--P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 176 D--PDDPDARNALAWLLIDM 193 (280)
T ss_dssp ---TT-HHHHHHHHHHHCTT
T ss_pred C--CCCHHHHHHHHHHHHHC
Confidence 3 53 55566666666544
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.91 E-value=0.0018 Score=46.71 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=106.5
Q ss_pred CccccCChHHHHHHHHHHHHCCCCCChh-------hchHH----------HHHH-HHHHHHHcCCCccHHHHHHHHHHHH
Q 047010 1 CYCNKNDFFEARKVIDYMFDNGYHPNVT-------TYTIL----------EAYE-MLMNVKNDGLKPDVYTYTAVMDGFC 62 (153)
Q Consensus 1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l----------~a~~-~~~~m~~~g~~~~~~t~~~ll~~~~ 62 (153)
+|.+.|++.+...+...|.+.|.--++. +|..+ +++. .+++. ....+.+...-.+++.-+.
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~-pr~lr~~p~l~~~~a~~li 274 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ-PRKLRNDPELVVAYAERLI 274 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc-cHHhhcChhHHHHHHHHHH
Confidence 3677899999999999999988644432 23322 2211 22222 2223456677788889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHH----------HHHHHHHH--cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 63 KVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVID--IGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 63 ~~g~~~~a~~l~~~m~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
++|+.++|.++..+-.+++..|+...+ ..+..+.+ ..+.-+...+.++=.-|.+.+.|.+|...|+..
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999888885555 22222221 222233477888889999999999999999955
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCC
Q 047010 131 YEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 131 ~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.+ ..|+..+|..+-+++.+.|
T Consensus 355 l~--~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 355 LK--LRPSASDYAELADALDQLG 375 (400)
T ss_pred Hh--cCCChhhHHHHHHHHHHcC
Confidence 44 5699999999988887765
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.91 E-value=0.0058 Score=48.01 Aligned_cols=74 Identities=3% Similarity=0.003 Sum_probs=41.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCh-hhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNV-TTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
..|++++|...++.+.+. .|+. ..+..+ .|...+++..... +.+...|..+...+...|++++|.
T Consensus 88 ~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHH
Confidence 456677777777776664 2332 222222 5555555555431 224455666666677777777777
Q ss_pred HHHHHHHHc
Q 047010 72 ELLNEAIER 80 (153)
Q Consensus 72 ~l~~~m~~~ 80 (153)
..++.+...
T Consensus 165 ~~~~~~~~~ 173 (656)
T PRK15174 165 SLARTQAQE 173 (656)
T ss_pred HHHHHHHHh
Confidence 777665443
No 37
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.90 E-value=0.00052 Score=47.79 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=70.9
Q ss_pred CccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH
Q 047010 48 KPDVYTYTAVMDGFCKV-----GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (153)
..|..+|-+.+.-+... +++|-.-..++.|.+-|+.-|..+|+.+.+++-+|.-....++..+.--|=+. -.=
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q--Q~C 141 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ--QNC 141 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh--hhH
Confidence 55666676666665443 45666666666777777777766666666666555544444444444444332 345
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 123 a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+..++++|..+||.||..+=..|+++|.|.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 7889999999999999999999999998864
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.88 E-value=0.0018 Score=47.83 Aligned_cols=151 Identities=11% Similarity=0.079 Sum_probs=95.4
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCC---ccHHHHHHHHHHHHh
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLK---PDVYTYTAVMDGFCK 63 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~---~~~~t~~~ll~~~~~ 63 (153)
|.+.|++++|..++..+.+.+.. +...+..+ .+.+.+..+.+.... .+...+-.+...+..
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 44567888888888888877542 22222211 111233334433221 377889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHH---HH------------HHHHHHHH-cCCCCcH---hhHHHHHHHHHccCcHHHHH
Q 047010 64 VGRSNEVMELLNEAIERGVTPNVV---TL------------IHLHNVID-IGHIPRT---ITFNNVIQALCGVGKIDKAL 124 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~~~~---~~------------~~~~~~~~-~~~~~~~---~~~~~li~~~~~~g~~~~a~ 124 (153)
.|+.++|.+++++..+..-..... .+ .....+.. ....|+. ....++-..+.+.|++++|.
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH
Confidence 999999999999998753222211 22 11111111 1223333 45667888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 125 LLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 125 ~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+.|+........|+...+..+-..+.+.|
T Consensus 356 ~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 356 DAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 99996555556799888888777766544
No 39
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.86 E-value=0.0075 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
+...+.+.|++++|...+++..+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444445555555555554443
No 40
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.00033 Score=51.66 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=44.8
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
|..++|..|...|..+.++.+++.=...||-||..|++.||+.+.++|
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~ 152 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKG 152 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcc
Confidence 446999999999999999999999999999999999999999998876
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=97.70 E-value=0.0051 Score=47.31 Aligned_cols=125 Identities=12% Similarity=0.000 Sum_probs=80.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
..+++++|...++...+.+ |+ ...+..+ +|...+++..+.. +.+...|..+-..+...|++++|.
T Consensus 316 ~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred cchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3466888888888888753 43 3333333 7788888777664 224566777788888899999999
Q ss_pred HHHHHHHHcCCC-chHHHH---------------HHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 72 ELLNEAIERGVT-PNVVTL---------------IHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 72 ~l~~~m~~~~~~-~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
..+++..+..-. +..... ..+.+..... .| +...+..+-..+...|++++|...+.++..
T Consensus 393 ~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 393 QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 999988775422 111111 1111111111 23 334466677778889999999999988654
No 42
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.57 E-value=0.0035 Score=46.06 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=80.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH---------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~ 74 (153)
..++++.|..+++++.+.. |+....-+- +|.+++.+..+. .+.|......-.+.+.+.++.+.|+++.
T Consensus 181 ~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3567899999999999875 554433111 777777776654 2345666777777788999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 75 NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 75 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
++..+. .|+ +..+|..|..+|.+.|+++.|+..++.|.
T Consensus 258 k~av~l--sP~-----------------~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 258 KKAVEL--SPS-----------------EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHh--Cch-----------------hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 998764 343 23599999999999999999999998775
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.56 E-value=0.015 Score=45.32 Aligned_cols=95 Identities=14% Similarity=0.045 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHH-----------------HHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTL-----------------IHLHNV 95 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~-----------------~~~~~~ 95 (153)
+|...+++..+.. +.+...|..+-..+...|++++|.+.|++..+.. |+. ..+ ..+.+.
T Consensus 383 eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 383 KAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555544432 2234556666666666666666666666655432 221 111 111111
Q ss_pred HHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 96 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.. ....+...|+.+-..+...|++++|...|++..+
T Consensus 460 l~-~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 460 KK-NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HH-hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 11 1112345566666666667777777777666554
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.012 Score=41.92 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.+.++.+.+...-..+...+..+|.+.|+.++....+.++.+.
T Consensus 236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3334444444444456777777888888887777777776554
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.52 E-value=0.0056 Score=38.60 Aligned_cols=88 Identities=7% Similarity=-0.087 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...|++..... +.+...|..+-.++.+.|++++|...|+...... |+ +...+..+-.+
T Consensus 42 ~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~-----------------~~~a~~~lg~~ 101 (144)
T PRK15359 42 RAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--AS-----------------HPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------CcHHHHHHHHH
Confidence 6777777776553 3477888999999999999999999999988743 32 44588888889
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
+...|++++|...|+...+. .|+...+.
T Consensus 102 l~~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 99999999999999998764 35544443
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.52 E-value=0.0062 Score=37.52 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|.+.++.+...+ +.+...|..+-..+.+.|++++|..+++...+.+ |+ +..++..+-..
T Consensus 35 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~-----------------~~~~~~~la~~ 94 (135)
T TIGR02552 35 EALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PD-----------------DPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-----------------ChHHHHHHHHH
Confidence 6777777776653 3477888888899999999999999999876653 22 23466667778
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~l 145 (153)
+...|++++|...|+...+.. |+...+..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 124 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC--GENPEYSEL 124 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc--cccchHHHH
Confidence 889999999999999887743 665554433
No 47
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.50 E-value=0.002 Score=40.57 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.....++..+...|++++|..+.+.+.... | .|...|..+|.+|...|+...|.+.|+.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P-----------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD--P-----------------YDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--T-----------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--C-----------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456667788889999999999999988753 2 245699999999999999999999998874
Q ss_pred -----HCCCCCCHHHHHH
Q 047010 132 -----EHGKIPSRTLYDT 144 (153)
Q Consensus 132 -----~~~v~p~~~~~~~ 144 (153)
+.|+.|+..+-..
T Consensus 124 ~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 124 RRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHS----HHHHHH
T ss_pred HHHHHHhCcCcCHHHHHH
Confidence 4699999877554
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.49 E-value=0.014 Score=43.11 Aligned_cols=132 Identities=8% Similarity=-0.025 Sum_probs=93.2
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchH-----H--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----L--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-----l--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
.+.|+++.|...+..+.+. .|+...... + .|.+.++++.+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 3568889999999988774 455433221 1 7788888887765 3467888999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHH--------HHHHH------------HHH---cCCCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL--------IHLHN------------VID---IGHIPRTITFNNVIQALCGVGKIDKALLL 126 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~--------~~~~~------------~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 126 (153)
|.+++..+.+.+..++...- ..+.. ..+ .....+.....++...+...|+.++|...
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998765433211 11111 111 12234666788889999999999999999
Q ss_pred HHHHHHCCCCCCH
Q 047010 127 LFLMYEHGKIPSR 139 (153)
Q Consensus 127 ~~~m~~~~v~p~~ 139 (153)
+++..+. .|+.
T Consensus 286 L~~~l~~--~~~~ 296 (398)
T PRK10747 286 ILDGLKR--QYDE 296 (398)
T ss_pred HHHHHhc--CCCH
Confidence 9888764 3444
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=97.47 E-value=0.026 Score=43.56 Aligned_cols=95 Identities=11% Similarity=-0.121 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHH-----------------HHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTL-----------------IHLHNV 95 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~-----------------~~~~~~ 95 (153)
.|...+++..+.. +-+...|..+-..+...|++++|...|++..+.+ |+. ..+ ..+...
T Consensus 322 ~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 322 KAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777777776653 2366778888888899999999999999988764 332 222 122222
Q ss_pred HHcCCCCcH-hhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 96 IDIGHIPRT-ITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 96 ~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.+ ..|+. ..+..+...+...|++++|...+++..+.
T Consensus 399 l~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 399 LK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred Hh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 22 23432 22333444566688899999999887654
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.47 E-value=0.021 Score=41.48 Aligned_cols=104 Identities=11% Similarity=0.024 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------HHHHH------------
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------IHLHN------------ 94 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------~~~~~------------ 94 (153)
|..-++++...+ +.+.........+|.+.|++.+...+...|.+.|.-.++..- .++++
T Consensus 172 A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 172 ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 334444444432 356788899999999999999999999999999976666543 11122
Q ss_pred ---HHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010 95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 95 ---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~ 139 (153)
-.....+.+...-.+++.-+.++|+.++|.++.++-.+++..|+.
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 122223445667788999999999999999999999888777763
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.46 E-value=0.019 Score=44.72 Aligned_cols=126 Identities=23% Similarity=0.237 Sum_probs=63.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
..|++++|...|+...+.. |+ ...+..+ +|+..+++..+.. +.+...|+.+-..+...|++++|.
T Consensus 411 ~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 3455666666665555432 22 2222221 5555555554431 234566666677777777777777
Q ss_pred HHHHHHHHcCCC--c---hHHH-H-------------HHHHHHHHc--CCCC-cHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 72 ELLNEAIERGVT--P---NVVT-L-------------IHLHNVIDI--GHIP-RTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 72 ~l~~~m~~~~~~--~---~~~~-~-------------~~~~~~~~~--~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+.|++.....-. + +... + .-....... ...| +...+..+...+.+.|++++|...|++
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777775543211 0 0000 0 000111111 1223 334566777777777777777777776
Q ss_pred HHH
Q 047010 130 MYE 132 (153)
Q Consensus 130 m~~ 132 (153)
..+
T Consensus 568 A~~ 570 (615)
T TIGR00990 568 AAE 570 (615)
T ss_pred HHH
Confidence 654
No 52
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=97.39 E-value=0.011 Score=41.90 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhhchHH-----------------HHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCC-
Q 047010 8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------------EAYEMLMNVKNDGL---KPDVYTYTAVMDGFCKVGR- 66 (153)
Q Consensus 8 ~~~a~~~~~~m~~~~~~~~~~~~~~l-----------------~a~~~~~~m~~~g~---~~~~~t~~~ll~~~~~~g~- 66 (153)
+++...+++.|.+.|++-+.++|-+. .+.++++.|++.-. .++...+.+++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888888888888888777543 77888888887643 4666778888776 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC-c--HHHHHHHHHHHHHCCCCCCHH
Q 047010 67 ---SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG-K--IDKALLLLFLMYEHGKIPSRT 140 (153)
Q Consensus 67 ---~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--~~~a~~~~~~m~~~~v~p~~~ 140 (153)
.+.++.+|+.+.+.|....... -+-+-|-+++... + ...+..+++.+++.|+++...
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~L-----------------Q~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~ 218 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDL-----------------QFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM 218 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHH-----------------HHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence 3567778888887776655432 2333333333222 1 235666777777777776666
Q ss_pred HHH
Q 047010 141 LYD 143 (153)
Q Consensus 141 ~~~ 143 (153)
.|.
T Consensus 219 ~yp 221 (297)
T PF13170_consen 219 HYP 221 (297)
T ss_pred ccc
Confidence 555
No 53
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.38 E-value=0.0039 Score=44.02 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=79.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~ 67 (153)
|.+.++++.|.+.++.|.+. ..|....+.. +|.-+|+++.+. ..++..+.|.+..+....|++
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-H
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCH
Confidence 45678999999999999875 3454443333 899999998765 567889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcH-HHHHHHHHHHHHC
Q 047010 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI-DKALLLLFLMYEH 133 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 133 (153)
++|.+++.+.... .|+ |..+...+|......|+. +.+.+++.+++..
T Consensus 218 ~eAe~~L~~al~~--~~~-----------------~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 218 EEAEELLEEALEK--DPN-----------------DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHCCC---CC-----------------HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHh--ccC-----------------CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999986543 232 223555677777777777 6778888888754
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.014 Score=44.93 Aligned_cols=138 Identities=20% Similarity=0.247 Sum_probs=84.2
Q ss_pred CccccCChHHHHHHHHHHHHCCCCC-ChhhchHH-------HHHHHHHHHHHcCCCccHHHHHHHHH---HHHhcCCHHH
Q 047010 1 CYCNKNDFFEARKVIDYMFDNGYHP-NVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYTAVMD---GFCKVGRSNE 69 (153)
Q Consensus 1 a~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l-------~a~~~~~~m~~~g~~~~~~t~~~ll~---~~~~~g~~~~ 69 (153)
+|+-.++.+.|.+.|....+- .| ..++|+.+ +-++....-.+..+..|...||+.-. .|.|.++.+.
T Consensus 430 cfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence 356678899999999988874 35 56778777 22233333344556678888877554 5889999999
Q ss_pred HHHHHHHHHHcCCCchHHHH---------------HHHHHH---HHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL---------------IHLHNV---IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~---------------~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
|+--|++..+ +.|...+. ..+..+ .....+-...-|.. ...+-..+++++|+..|++++
T Consensus 508 Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~-~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 508 AEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR-ASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH-HHHHHhhcchHHHHHHHHHHH
Confidence 9999888654 45555544 111111 11111212222333 233345778889999998887
Q ss_pred HCCCCCCHHHHHHH
Q 047010 132 EHGKIPSRTLYDTL 145 (153)
Q Consensus 132 ~~~v~p~~~~~~~l 145 (153)
+ +.|+..+--.+
T Consensus 585 ~--~vP~es~v~~l 596 (638)
T KOG1126|consen 585 E--LVPQESSVFAL 596 (638)
T ss_pred H--hCcchHHHHHH
Confidence 7 45665544433
No 55
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.33 E-value=0.0022 Score=34.61 Aligned_cols=65 Identities=28% Similarity=0.390 Sum_probs=50.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHH
Q 047010 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141 (153)
Q Consensus 62 ~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~ 141 (153)
.+.|++++|.++|++..... |+ |...+-.+..+|.+.|++++|..+++.+.... |+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~-----------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~ 60 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PD-----------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPE 60 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TT-----------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHH
Confidence 46899999999999997753 22 34477789999999999999999999987753 77666
Q ss_pred HHHHHH
Q 047010 142 YDTLIK 147 (153)
Q Consensus 142 ~~~li~ 147 (153)
|..++.
T Consensus 61 ~~~l~a 66 (68)
T PF14559_consen 61 YQQLLA 66 (68)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665543
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.29 E-value=0.04 Score=40.81 Aligned_cols=128 Identities=10% Similarity=0.016 Sum_probs=92.0
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChh-----hchHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVT-----TYTIL--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~l--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
+.|+.+.|...+....+.. |+.. ++..+ .|.+.++.+.+.. +-+...+..+...+.+.|++++|
T Consensus 130 ~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 130 QRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHH
Confidence 4588888888888876542 3332 12222 7788888888875 33667889999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHH----H----------------HHHHHHHcCC---CCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 71 MELLNEAIERGVTPNVVTL----I----------------HLHNVIDIGH---IPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~----~----------------~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
.+++..+.+.+..+..... . .+..+..... ..+...+-.+...+...|+.++|..++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999998765443321 1 1112222221 137788999999999999999999999
Q ss_pred HHHHHCC
Q 047010 128 FLMYEHG 134 (153)
Q Consensus 128 ~~m~~~~ 134 (153)
++..+..
T Consensus 287 ~~~l~~~ 293 (409)
T TIGR00540 287 FDGLKKL 293 (409)
T ss_pred HHHHhhC
Confidence 9987653
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.29 E-value=0.022 Score=37.71 Aligned_cols=128 Identities=12% Similarity=0.025 Sum_probs=84.1
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
|...|++++|...++...+.. +.+...+..+ ++.+.+.+...... ......+..+-..+...|++++
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 345688999999998888754 2222333222 67777777765422 2244567777888899999999
Q ss_pred HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|.+.+++..+..-. +...+ ..+...... ...+...+......+...|+.+.|..+.+.+..
T Consensus 154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988765321 22222 222333332 234556677788888899999999999888754
No 58
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.28 E-value=0.038 Score=45.52 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=10.0
Q ss_pred ccCChHHHHHHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFD 20 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~ 20 (153)
+.|++++|...|+.+..
T Consensus 521 ~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 521 QVEDYATALAAWQKISL 537 (987)
T ss_pred HCCCHHHHHHHHHHHhc
Confidence 45666666666665543
No 59
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.23 E-value=0.023 Score=41.36 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-.+|.+.|++++|+..+++..+.. |+ +...|..+-.+|.+.|++++|...|++
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~-----------------~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELD--PS-----------------LAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-----------------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56677888888999999999999999987753 32 234777888888999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHh
Q 047010 130 MYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~ 149 (153)
..+. .|+.......+..|
T Consensus 96 al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 96 GASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHh--CCCCHHHHHHHHHH
Confidence 8764 46665555555544
No 60
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.22 E-value=0.0096 Score=33.12 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...+..+-..+...|++++|.+.|+...+... .+..++..+...+...|+++.|...+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 33 NADAYYNLAAAYYKLGKYEEALEDYEKALELDP-------------------DNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------------cchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 336677778888888999999999988766432 1224777888888899999999999887
Q ss_pred HHH
Q 047010 130 MYE 132 (153)
Q Consensus 130 m~~ 132 (153)
..+
T Consensus 94 ~~~ 96 (100)
T cd00189 94 ALE 96 (100)
T ss_pred HHc
Confidence 754
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.053 Score=40.59 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=65.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------------HHHHHHH-HcCCCCcHhhHHHHHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------IHLHNVI-DIGHIPRTITFNNVIQ 112 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~li~ 112 (153)
+.|....+-|-+.|-+.|+-..|.+.+-.--+ =.+.+..+. ..+..+. ..-++|+..-|..||.
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 34566666666777777766666665433111 122222222 2223333 2457899999999987
Q ss_pred HHH-ccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 113 ALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 113 ~~~-~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
.|. +.|++..|+++++.... .+.-|......|++.|..-
T Consensus 668 sc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccc
Confidence 654 67899999999999754 4566788888888776543
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.03 Score=41.76 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=87.3
Q ss_pred ccCChHHHHHHHHHHHHCCC--CCChhhchHH-------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGY--HPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l-------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~ 74 (153)
...|+++|..+|+++.+..- --|..+|..+ ..+..+-+-...--+--..|..++-+-|+-.++.|+|...|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 45789999999999998631 1233444322 22222222222211234456666777777777778888888
Q ss_pred HHHHHcCCCch-HHHH-----------------------------------------------HHHHHHHHcCCCC-cHh
Q 047010 75 NEAIERGVTPN-VVTL-----------------------------------------------IHLHNVIDIGHIP-RTI 105 (153)
Q Consensus 75 ~~m~~~~~~~~-~~~~-----------------------------------------------~~~~~~~~~~~~~-~~~ 105 (153)
++-++.+-.-. ..|+ .+.---.....+| |..
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR 433 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR 433 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence 77666432211 1121 1111112234555 778
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~ 150 (153)
.|.+|-.+|.+.++.++|..-|++....|= .+...+..|-+.+-
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye 477 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYE 477 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHH
Confidence 999999999999999999999998877653 24555655555543
No 63
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.009 Score=45.87 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=81.7
Q ss_pred ccccCChHHHHHHHHHHHHCC--CCCChhhchHH-------HHHHHHH-HHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNG--YHPNVTTYTIL-------EAYEMLM-NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l-------~a~~~~~-~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
|-.-+++++|+.+|+..++.. ..-+...|.+. .++..+. ++... -+-...||.++=++|+-+++.+.|.
T Consensus 363 yFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Ai 441 (638)
T KOG1126|consen 363 YFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAI 441 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHH
Confidence 445578889999999988752 11223344333 2333332 22221 1335699999999999999999999
Q ss_pred HHHHHHHHcCCCc-hHHHH-------------HHHHHHHHcCCCCcHhhHHHHH---HHHHccCcHHHHHHHHHHHHHC
Q 047010 72 ELLNEAIERGVTP-NVVTL-------------IHLHNVIDIGHIPRTITFNNVI---QALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 72 ~l~~~m~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
+.|++..+.. | ...+| +....-+...+..|...||++- -.|.+.++++.|.-.|+...+-
T Consensus 442 k~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 442 KCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred HHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 9999977643 3 22333 2223333445667777777654 3577888888888888776653
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.17 E-value=0.064 Score=44.24 Aligned_cols=122 Identities=11% Similarity=-0.052 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~ 74 (153)
++..+|...+...... .|+......+ +|...++++... .|+...+..+...+.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566677766666554 2443322111 666666665443 333344555566677777777777777
Q ss_pred HHHHHcCCCchHHH-H-HHHHHH------------HH--cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 75 NEAIERGVTPNVVT-L-IHLHNV------------ID--IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 75 ~~m~~~~~~~~~~~-~-~~~~~~------------~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
++..+.. |+... . .+.... .. ....|+...|..+-..+.+.|++++|...+++..+.
T Consensus 566 ~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 566 QQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7766553 22221 1 111111 11 122355566666666777777777777777666554
No 65
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.04 E-value=0.0029 Score=35.87 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=53.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP 84 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~ 84 (153)
.|+++.|..+++.+.+.. | ..++...+-.+-.+|.+.|++++|.++++. .+. .|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--~---------------------~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~ 55 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--P---------------------TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DP 55 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--C---------------------GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HH
T ss_pred CccHHHHHHHHHHHHHHC--C---------------------CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CC
Confidence 466777777777766641 1 012445566689999999999999999988 221 12
Q ss_pred hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 85 NVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+. ....-.+-.++.+.|++++|..+|++
T Consensus 56 ~~-----------------~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 56 SN-----------------PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp CH-----------------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CC-----------------HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 11 11222446788899999999999875
No 66
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.03 E-value=0.033 Score=35.01 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDV--YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 111 (153)
+|...|+........|+. ...-.+-..+...|++++|+..++...... .....+...-
T Consensus 66 ~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------------------~~~~~~~~~G 125 (145)
T PF09976_consen 66 EAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--------------------FKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--------------------hHHHHHHHHH
Confidence 555555555554422221 223334455555566666665554421111 1234667778
Q ss_pred HHHHccCcHHHHHHHHHH
Q 047010 112 QALCGVGKIDKALLLLFL 129 (153)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~ 129 (153)
+.|.+.|++++|...|+.
T Consensus 126 di~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 889999999999999875
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.99 E-value=0.072 Score=44.76 Aligned_cols=105 Identities=12% Similarity=0.018 Sum_probs=70.3
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
...|+.++|..+++. .+.+...+..+ +|.+.+++..+.. +.+...+..+...|...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888887762 13333333333 7788888877763 236788889999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 72 ~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
+.++...+. .|+. ...+..+...+...|++++|..+++.+..
T Consensus 658 ~~l~~ll~~--~p~~-----------------~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 658 AQLAKLPAT--ANDS-----------------LNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHhcc--CCCC-----------------hHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999977653 3332 22444555566667777777777776654
No 68
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.97 E-value=0.0088 Score=33.23 Aligned_cols=66 Identities=18% Similarity=0.338 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIHLHNVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+|+.+-..|.+.|++++|++.|++..+.. ..++ . |+ ..+++.+-..|...|++++|...++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~--------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD-H--------------PDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH-H--------------HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC-C--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578899999999999999999999886531 2221 1 22 4589999999999999999999998
Q ss_pred HHHH
Q 047010 129 LMYE 132 (153)
Q Consensus 129 ~m~~ 132 (153)
+..+
T Consensus 71 ~al~ 74 (78)
T PF13424_consen 71 KALD 74 (78)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.013 Score=41.87 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=58.8
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHH-HHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY-TAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~-~~ll~~~~~~g~~~~ 69 (153)
|.+-|.+.+|.+.+....+.. |.+.||-.| .|+.++.+-.+. .|-.+|| .-+-..+-..++.++
T Consensus 233 ylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHH
Confidence 445566666666666665542 333333322 333333333322 2333333 223333444455555
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~ 144 (153)
|.++++...+.. .-|+....++-.+|-..++++.|+++++++..-|+. +...|..
T Consensus 309 a~~lYk~vlk~~-------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~N 363 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCN 363 (478)
T ss_pred HHHHHHHHHhcC-------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhh
Confidence 555555544321 123445556666666677777777777777766653 3444443
No 70
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.92 E-value=0.0057 Score=42.79 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhchHH---------------------------HHHHHHHHHHHcCCCccHHHHHHHH
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------EAYEMLMNVKNDGLKPDVYTYTAVM 58 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------------------~a~~~~~~m~~~g~~~~~~t~~~ll 58 (153)
++++--...+..|++.|+..|..+|+.| =+..++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 4444455556677777777777777766 4567777777777777777777777
Q ss_pred HHHHhcCCH-HHHHHHHHHH
Q 047010 59 DGFCKVGRS-NEVMELLNEA 77 (153)
Q Consensus 59 ~~~~~~g~~-~~a~~l~~~m 77 (153)
+++++.+.. .+..++.--|
T Consensus 166 n~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhccccccHHHHHHHHHhh
Confidence 777777754 3344444344
No 71
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.91 E-value=0.011 Score=31.56 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
-..+.+.|++++|.+.|++.++.. |+ +...+..+-..+.+.|++++|...|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PD-----------------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TT-----------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356789999999999999998865 43 2348888899999999999999999998764
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.053 Score=41.29 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=91.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcC--CCc----cHHHHHHHHHHHHhc
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKP----DVYTYTAVMDGFCKV 64 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g--~~~----~~~t~~~ll~~~~~~ 64 (153)
|.+.++++.|.+.|.+.... .+.|+...+.+ +|...|+.-.... +.+ -.-+++.|=-.|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 44667888899988887764 24555666555 6777776554211 111 223456666678889
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010 65 GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144 (153)
Q Consensus 65 g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~ 144 (153)
+..++|...+++-.... | .|..++.++--.|...|+++.|.+.|.+.. .+.|+..+.+.
T Consensus 469 ~~~~eAI~~~q~aL~l~--~-----------------k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~ 527 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS--P-----------------KDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISE 527 (611)
T ss_pred hhHHHHHHHHHHHHHcC--C-----------------CchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHH
Confidence 99999999999877643 1 345588898889999999999999999754 46799988888
Q ss_pred HHHHhhc
Q 047010 145 LIKKLDQ 151 (153)
Q Consensus 145 li~~~~~ 151 (153)
+++.+..
T Consensus 528 lL~~aie 534 (611)
T KOG1173|consen 528 LLKLAIE 534 (611)
T ss_pred HHHHHHH
Confidence 8876643
No 73
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.90 E-value=0.13 Score=41.74 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=58.6
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcC
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-----LKPDVYTYTAVMDGFCKVG 65 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g-----~~~~~~t~~~ll~~~~~~g 65 (153)
+...++.+++..-|+.|...+.+.-..+-..+ +|..++.++.+.. ..++......|.-+|...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 34568899999999999987743222222222 8999999987653 2334555788999999999
Q ss_pred CHHHHHHHHHHHHH
Q 047010 66 RSNEVMELLNEAIE 79 (153)
Q Consensus 66 ~~~~a~~l~~~m~~ 79 (153)
++++|..+++.+.+
T Consensus 382 ~~~~A~~~l~~~~~ 395 (822)
T PRK14574 382 QLDKAYQFAVNYSE 395 (822)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999999987
No 74
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.88 E-value=0.012 Score=41.34 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=88.0
Q ss_pred cCChHHHHHHHHHHHHCC-CCCChhhchHH----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNG-YHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l 73 (153)
.+..+.|+.+|...++.+ +..+++...++ .|..+|+...+. +..+..-|..-++-+.+.++.+.|..+
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 345789999999998653 23333333333 488888877765 456778889999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 74 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
|++.... ++++.. ....|...+.-=.+.|+.+.+..+.+++.+. .|+...+..+++-
T Consensus 93 fer~i~~-l~~~~~---------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 93 FERAISS-LPKEKQ---------------SKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHHCCT-SSCHHH---------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHHHHh-cCchhH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 9998755 444321 2358999999999999999999999999874 4555555545443
No 75
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.88 E-value=0.012 Score=36.94 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-----RGVTPNVVTLIHLHN 94 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~~~~~~~~ 94 (153)
.+.+.++.+.... +.|...|..+|.+|.+.|+..+|.++|+++.+ .|+.|+..+-.+..+
T Consensus 80 ~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 80 EALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 4555555555442 35889999999999999999999999998754 588888886555444
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.87 E-value=0.048 Score=34.35 Aligned_cols=78 Identities=8% Similarity=-0.165 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.+...-..+.+.|++++|.+.|+..... .|+ +...|..+-..+.+.|++++|...|+...+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--QPW-----------------SWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3556677889999999999999998764 332 445899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHhh
Q 047010 133 HGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 133 ~~v~p~~~~~~~li~~~~ 150 (153)
.+ ..+...+..+-.++.
T Consensus 87 l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred cC-CCCcHHHHHHHHHHH
Confidence 54 234455544444443
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.84 E-value=0.24 Score=41.78 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=40.7
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
..|++++|...|+...+. .|+ ...+..+ +|...++++.+... .+...+..+...+.+.++.++|+
T Consensus 473 ~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHH
Confidence 468888888888888775 344 2222222 67777777665422 23333333333455566666666
Q ss_pred HHHHHH
Q 047010 72 ELLNEA 77 (153)
Q Consensus 72 ~l~~~m 77 (153)
..++.+
T Consensus 550 ~~l~~l 555 (1157)
T PRK11447 550 AHLNTL 555 (1157)
T ss_pred HHHHhC
Confidence 666554
No 78
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.80 E-value=0.092 Score=42.20 Aligned_cols=134 Identities=9% Similarity=-0.018 Sum_probs=86.9
Q ss_pred cccCChHHHHHHHHHHHHCCCC-CCh-hhchH-H--------HHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYH-PNV-TTYTI-L--------EAYEMLMNVKNDGLKP---DVYTYTAVMDGFCKVGRSN 68 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~-l--------~a~~~~~~m~~~g~~~---~~~t~~~ll~~~~~~g~~~ 68 (153)
...|++++|...|+.+.+.+-+ |+. ..+.. + +|...++++.+..... ....+..+..++.+.|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 3457899999999999887522 321 12111 1 8888898877653211 1345667777889999999
Q ss_pred HHHHHHHHHHHcC-----------CCchHH---HH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010 69 EVMELLNEAIERG-----------VTPNVV---TL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGV 117 (153)
Q Consensus 69 ~a~~l~~~m~~~~-----------~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~ 117 (153)
+|..+++.+.... ..|+.. .+ ..+..+.. ...-+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-NAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Confidence 9999999997652 112311 11 12222221 1223456788888888889
Q ss_pred CcHHHHHHHHHHHHHCCCCCCH
Q 047010 118 GKIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 118 g~~~~a~~~~~~m~~~~v~p~~ 139 (153)
|++++|...+++..+.. |+.
T Consensus 407 g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 407 GWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred CCHHHHHHHHHHHHhhC--CCC
Confidence 99999999998877643 654
No 79
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.79 E-value=0.1 Score=42.26 Aligned_cols=145 Identities=10% Similarity=0.134 Sum_probs=84.1
Q ss_pred cccCChHHHHHHHHHHHHCCCCCCh--hhchHH----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNV--TTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
++.|++..|...|.+..+.. |+. ..+..+ .|...+++.... ...+.....++...|...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 57899999999999998763 543 222222 777777776611 112223333335578888999999
Q ss_pred HHHHHHHHHcCC-CchHHHH------------HHHHHHHH-cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010 71 MELLNEAIERGV-TPNVVTL------------IHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136 (153)
Q Consensus 71 ~~l~~~m~~~~~-~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~ 136 (153)
.++|+++.+..- .|+.... ..+....+ ....|+...+-.++..+...++..+|+..++++.+..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-- 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-- 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--
Confidence 999999987642 2222211 11111111 1234555556444444444556656888888887754
Q ss_pred C-CHHHHHHHHHHhhcC
Q 047010 137 P-SRTLYDTLIKKLDQQ 152 (153)
Q Consensus 137 p-~~~~~~~li~~~~~~ 152 (153)
| +...+..++.+..+.
T Consensus 200 P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 200 PTSEEVLKNHLEILQRN 216 (822)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 4 344445555555443
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.77 E-value=0.035 Score=42.26 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=80.1
Q ss_pred ccccCChHHHHHHHHHHHHC-----CC-CCChhhc-hHH-----------HHHHHHHHHH-------HcCCCccHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDN-----GY-HPNVTTY-TIL-----------EAYEMLMNVK-------NDGLKPDVYTYTA 56 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~-----~~-~~~~~~~-~~l-----------~a~~~~~~m~-------~~g~~~~~~t~~~ 56 (153)
|...|+++.|..++.+..+. |. -|...+. +.+ +|..+|.+.. ...-+.-..+++.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 56789999999999887764 21 1222211 111 5555555433 2222223366788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH---c--C-CCchHHHH------------------HHH---HHHHHcCCCCcH----h
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIE---R--G-VTPNVVTL------------------IHL---HNVIDIGHIPRT----I 105 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~---~--~-~~~~~~~~------------------~~~---~~~~~~~~~~~~----~ 105 (153)
|-..|.+.|++++|...++...+ . | ..|..... .++ ......-+.++. .
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 88889999999999988887543 1 2 22333322 111 112222222322 5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
+++.+-..|-+.|++++|.++|+...
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 79999999999999999999999874
No 81
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.17 Score=38.10 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=103.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l 73 (153)
.+|++++|...|.+.......-....||.- +|+..|-.+..- ..-+......+-+-|--..+...|.++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 369999999999999876544444444422 788888766532 234667777788888888899999988
Q ss_pred HHHHHHcC-CCchHHHHHHHHHHHHc-C---------------CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010 74 LNEAIERG-VTPNVVTLIHLHNVIDI-G---------------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136 (153)
Q Consensus 74 ~~~m~~~~-~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~ 136 (153)
+-+ ... ++-|+.++.-+.++.+. | +.-|+.+...+-..|....=++++..+|++..- ++
T Consensus 581 ~~q--~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQ--ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHH--hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 755 444 45556666555444432 1 223677888888889888888999999998644 68
Q ss_pred CCHHHHHHHHHHhhc
Q 047010 137 PSRTLYDTLIKKLDQ 151 (153)
Q Consensus 137 p~~~~~~~li~~~~~ 151 (153)
|+.+-|-.+|..|.|
T Consensus 657 p~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFR 671 (840)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988876
No 82
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.67 E-value=0.25 Score=39.79 Aligned_cols=108 Identities=7% Similarity=0.019 Sum_probs=66.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~ 72 (153)
..|+.++|..+|....... +.+...+..+ .|.+.+++..... +.+...+..+...+...|+.++|..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3577788888888776522 2222223222 6677777765542 2245556677777888888888888
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 73 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.+++..+. .|+ +.. +..+-..+...|++++|...+++..+.
T Consensus 105 ~l~~~l~~--~P~-----------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 105 KAKQLVSG--APD-----------------KAN-LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHHh--CCC-----------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88887664 232 223 555666666667777777777666553
No 83
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.60 E-value=0.11 Score=38.34 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHHcCCCCcHhhHHHHHHHHHccC
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVIDIGHIPRTITFNNVIQALCGVG 118 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g 118 (153)
-.+++..+...++++.|.++|+++.+.. |+.... .++.+... ..+.|......-..-+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~-~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALK-ENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcC
Confidence 4566777778889999999999998875 555443 22222221 12235666777777788999
Q ss_pred cHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCC
Q 047010 119 KIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLDQQP 153 (153)
Q Consensus 119 ~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~~~~~g 153 (153)
+++.|+.+.+++.+. .| +..+|..|.++|.+.|
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLG 282 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcC
Confidence 999999999999875 35 4569999999988764
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.51 E-value=0.047 Score=29.39 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC-cHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG-KIDKALLLLF 128 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~ 128 (153)
+...|..+=..+.+.|++++|+..|.+..+.. |+. ...|..+-.++.+.| ++++|...++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~-----------------~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNN-----------------AEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTH-----------------HHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC-----------------HHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 45778888899999999999999999998863 432 348888999999999 8999999998
Q ss_pred HHHH
Q 047010 129 LMYE 132 (153)
Q Consensus 129 ~m~~ 132 (153)
...+
T Consensus 63 ~al~ 66 (69)
T PF13414_consen 63 KALK 66 (69)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.46 E-value=0.092 Score=32.20 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+......+...+.+.|+.++|.+.|+.....+ |+ +...|..+-..+.+.|+++.|...++.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PY-----------------NSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788899999999999999987753 22 334788888999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHhh
Q 047010 130 MYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~ 150 (153)
..+.+ ..+...+..+-..+.
T Consensus 77 ~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 77 AAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHhcC-CCChHHHHHHHHHHH
Confidence 87654 334455544444443
No 86
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.46 E-value=0.057 Score=29.80 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.|..+...+...|++++|.+.+++..+.. |+ +...+..+...+...|++++|...|+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PD-----------------NADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--Cc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567778888999999999999987653 21 124677788888889999999999998876
Q ss_pred CCCCCCHHHHHHHHHHh
Q 047010 133 HGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 133 ~~v~p~~~~~~~li~~~ 149 (153)
... .+..++..+...+
T Consensus 63 ~~~-~~~~~~~~~~~~~ 78 (100)
T cd00189 63 LDP-DNAKAYYNLGLAY 78 (100)
T ss_pred CCC-cchhHHHHHHHHH
Confidence 542 2334444444443
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.43 E-value=0.18 Score=35.75 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=66.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------------------HHHHHHHHcCCCCcHhhHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------IHLHNVIDIGHIPRTITFN 108 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 108 (153)
-+.......+..|.+.++++.|.+.++.|.+. ..|.... .++.++ .....++..+.|
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El-~~~~~~t~~~ln 205 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL-SDKFGSTPKLLN 205 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH-HCCS--SHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HhccCCCHHHHH
Confidence 45667778889999999999999999999764 3444433 333333 334557888999
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
.+..+....|++++|..++.+..+.+ .-+..+...+|-..
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCS 245 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence 99999999999999999999876543 22455555555443
No 88
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.28 Score=36.91 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=54.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
+-|+..|.+|=++|.+.++.++|.+.|......|-. +...+..+-..|-+.++..+|...|
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-------------------e~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-------------------EGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-------------------chHHHHHHHHHHHHHHhHHHHHHHH
Confidence 348899999999999999999999999998876532 2247888888888888898888888
Q ss_pred HHHHH
Q 047010 128 FLMYE 132 (153)
Q Consensus 128 ~~m~~ 132 (153)
+...+
T Consensus 490 ek~v~ 494 (559)
T KOG1155|consen 490 EKYVE 494 (559)
T ss_pred HHHHH
Confidence 77654
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.37 E-value=0.13 Score=39.35 Aligned_cols=95 Identities=20% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--Cch-HHHH---------------------HHHHHHHHcCC-CC
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG----V--TPN-VVTL---------------------IHLHNVIDIGH-IP 102 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~----~--~~~-~~~~---------------------~~~~~~~~~~~-~~ 102 (153)
-+|+.|=..|-+.|++++|+++|++..... - .+. ...+ ....-+...|. .|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 679999999999999999999999875521 1 111 1111 00011112222 23
Q ss_pred c-HhhHHHHHHHHHccCcHHHHHHHHHHHH---H---CCCCCCHHHHHHHH
Q 047010 103 R-TITFNNVIQALCGVGKIDKALLLLFLMY---E---HGKIPSRTLYDTLI 146 (153)
Q Consensus 103 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~---~---~~v~p~~~~~~~li 146 (153)
+ ..+|.-|...|.+.|+++.|..+.+... + .+..|+........
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRL 498 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhh
Confidence 3 3679999999999999999999887664 2 23455555554443
No 90
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.28 E-value=0.071 Score=28.99 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=51.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
..|.+.+++++|.++++.+.+.+ |+ +...|...-..+.+.|++++|...|+...+.+ |+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~-----------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PD-----------------DPELWLQRARCLFQLGRYEEALEDLERALELS--PD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cc-----------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CC
Confidence 56889999999999999998763 32 34577788889999999999999999998754 55
Q ss_pred HHHHH
Q 047010 139 RTLYD 143 (153)
Q Consensus 139 ~~~~~ 143 (153)
...-.
T Consensus 62 ~~~~~ 66 (73)
T PF13371_consen 62 DPDAR 66 (73)
T ss_pred cHHHH
Confidence 54443
No 91
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.26 E-value=0.11 Score=30.87 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
...+..+-..+.+.|++++|.+.|+...... |+.. ....++..+...+.+.|++++|...++++
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSP--------------KAPDALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCC--------------cccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3456668888999999999999999987642 1100 11235667777888999999999999999
Q ss_pred HHCC
Q 047010 131 YEHG 134 (153)
Q Consensus 131 ~~~~ 134 (153)
.+..
T Consensus 103 ~~~~ 106 (119)
T TIGR02795 103 IKRY 106 (119)
T ss_pred HHHC
Confidence 8764
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.21 E-value=0.11 Score=39.72 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC 115 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 115 (153)
.+.++++...-..--..+|...|+.-.|..-++.|..+|.+..+.+..+. +++++++++..||
T Consensus 351 ~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h-----------------hVfVa~A~mEy~c 413 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH-----------------HVFVAAALMEYYC 413 (656)
T ss_pred HHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc-----------------hhhHHHHHHHHHh
Confidence 34444444432223346788888888888888888888888888777662 2345555555555
Q ss_pred ccCcHHHHHHHHH
Q 047010 116 GVGKIDKALLLLF 128 (153)
Q Consensus 116 ~~g~~~~a~~~~~ 128 (153)
.++.+-|.++|+
T Consensus 414 -skD~~~AfrIFe 425 (656)
T KOG1914|consen 414 -SKDKETAFRIFE 425 (656)
T ss_pred -cCChhHHHHHHH
Confidence 334555555554
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.19 E-value=0.012 Score=31.60 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=41.1
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+.|++++|..+|..+.+.. +-|...+-.+..+|.+.|++++|.++++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-------------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-------------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-------------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4577777777777776642 2377778889999999999999999999987763
No 94
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.25 Score=34.46 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+|+-+|++|.++ ..|+.-+.+-...++...|++++|+.++++.....
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 788888888875 57888899999999999999999999999987754
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.16 E-value=0.39 Score=38.29 Aligned_cols=106 Identities=12% Similarity=0.055 Sum_probs=78.0
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~a 70 (153)
+.|.+++|+.+++...+. .|+..-.-.. +|+..+++..+. .| +......+-.++.+.|+.++|
T Consensus 98 ~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHH
Confidence 457888898888888874 6776543222 777777777665 34 445667777788889999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
..+|++....+ |+ +..++...-.++-..|+.++|...|+...+
T Consensus 174 ~~~y~~~~~~~--p~-----------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 174 DACFERLSRQH--PE-----------------FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcC--CC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999988732 22 134777888888889999999999988765
No 96
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.16 E-value=0.32 Score=36.60 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.++..++.+... .+-|..-+....+.+.+.++.++|.+.++.+...
T Consensus 324 ~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 324 EALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred hHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 444444444433 1224444455555566666666666666665543
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.14 E-value=0.24 Score=33.80 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=63.1
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~ 69 (153)
|.+.||...|..-++...+.. +-+..+|..+ .|.+.|++-.+. .| +-...|.-=.-+|..|.+++
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChHH
Confidence 567899999999999988863 2223344433 444444443332 23 22334444444577778888
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|...|++.....--|... .+|.-+.-+..+.|+++.|...|++-.+
T Consensus 122 A~q~F~~Al~~P~Y~~~s-----------------~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 122 AMQQFERALADPAYGEPS-----------------DTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHHHHHHhCCCCCCcc-----------------hhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 888888777654322211 2555555555555666666665555543
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.12 E-value=0.3 Score=36.72 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=93.3
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~~ 69 (153)
.+.|.+++|+..++.+... .|+..-|..+ +|.+.++++... .|+ ..-+-.+-++|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3568889999999998875 5666666554 788888887776 455 5666777888999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHH-cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH--GKIPSRTLYDTLI 146 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~v~p~~~~~~~li 146 (153)
|..+++...... +-|+..|..+-+..+ .|-. ...-.+--++|...|+++.|...+...++. .-.|+..=+...|
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~--~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari 469 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNR--AEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARI 469 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 999999986543 455555554444442 2222 123334455666677777888877777653 2345555555555
Q ss_pred HHh
Q 047010 147 KKL 149 (153)
Q Consensus 147 ~~~ 149 (153)
+..
T Consensus 470 ~~~ 472 (484)
T COG4783 470 DQL 472 (484)
T ss_pred HHH
Confidence 544
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.03 E-value=0.035 Score=29.55 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=41.0
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.+.|++++|...|+...+.. | -+...|..+-.++.+.|++++|..+|++..+.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~--P-----------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD--P-----------------------DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS--T-----------------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC--C-----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777777652 2 36788888899999999999999999998764
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.01 E-value=0.25 Score=32.90 Aligned_cols=94 Identities=6% Similarity=-0.009 Sum_probs=62.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHH-HHHH-HHcCC----------------CC-cHhhHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNV-IDIGH----------------IP-RTITFN 108 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~-~~~~-~~~~~----------------~~-~~~~~~ 108 (153)
+.|...|..+-..|...|++++|...|++..+..- -+...+.. ..-+ ...|. .| +..++.
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 34677888888888888888888888887766531 12222211 1111 12121 23 556888
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
.+-..+...|++++|...++.+.+.. .|+..-+.
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 88889999999999999999997754 45554443
No 101
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.94 E-value=0.4 Score=34.66 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVIDI 98 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~ 98 (153)
.|+..++++.+.|+. +..-|+.+=-+|.-.+++|-++.-|++....--.|+...- .+..+.+.-
T Consensus 342 ~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred HHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 677777777777763 4455666666666777777777777776665444443321 333333322
Q ss_pred ---CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 99 ---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 99 ---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.-.-+...+|.+----.+.|++++|..++...+..
T Consensus 421 aL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 421 ALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 22234467888888888999999999999887654
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.47 Score=33.15 Aligned_cols=122 Identities=18% Similarity=0.169 Sum_probs=67.6
Q ss_pred ccccCChHHHHHHHHHHHHCC-CCCChhhchHH----HHHHHHHHHHHcCCCccHHHHHHHHHHH----HhcCCHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL----EAYEMLMNVKNDGLKPDVYTYTAVMDGF----CKVGRSNEVME 72 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l----~a~~~~~~m~~~g~~~~~~t~~~ll~~~----~~~g~~~~a~~ 72 (153)
|+..+++++|++..+..-.-. .-.++.....+ .|...+++|.+. -+..|.+-|-+++ ...+.+..|.-
T Consensus 118 ~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfy 194 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFY 194 (299)
T ss_pred hhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 455667777766655511100 00111111122 344444455543 2445555443333 33456777788
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047010 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146 (153)
Q Consensus 73 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li 146 (153)
+|++|-. ..+|+ .-+.|-...++...|++++|..+++...++. .-+..+...+|
T Consensus 195 ifeE~s~-k~~~T------------------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nli 248 (299)
T KOG3081|consen 195 IFEELSE-KTPPT------------------PLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLI 248 (299)
T ss_pred HHHHHhc-ccCCC------------------hHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHH
Confidence 8887743 23343 4488888889999999999999999887653 12344444443
No 103
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.61 E-value=0.46 Score=33.49 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH-
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY- 131 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~- 131 (153)
++..++..+...|+.+.+.+.++++.... .-|...|..++.+|.+.|+...|.+.++.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-------------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45567777777777788877777776542 1355699999999999999999999999886
Q ss_pred ----HCCCCCCHHHHHHHHHHh
Q 047010 132 ----EHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 132 ----~~~v~p~~~~~~~li~~~ 149 (153)
+.||.|...+.....+..
T Consensus 216 ~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 216 TLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred HhhhhcCCCccHHHHHHHHHHh
Confidence 469999988877766653
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.58 E-value=0.33 Score=32.35 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred cccCChHHHHHHHHHHHHCCCCCC-hhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~ 67 (153)
...|++++|...|+...+.. |+ ...+..+ ++.+++++..+... -+...+..+-..+.+.|++
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCH
Confidence 35566777777777666643 32 2222211 34455555544422 2556666666667777777
Q ss_pred HHHHHHHHHHHHcC
Q 047010 68 NEVMELLNEAIERG 81 (153)
Q Consensus 68 ~~a~~l~~~m~~~~ 81 (153)
++|...|+++.+..
T Consensus 161 ~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 161 AQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHhhC
Confidence 77777777776543
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.53 E-value=1.2 Score=38.14 Aligned_cols=37 Identities=19% Similarity=0.017 Sum_probs=32.3
Q ss_pred cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~ 139 (153)
-+..|++.|+.-.++|+.+.+..+|++....++.|-.
T Consensus 1633 RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1633 RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 3468999999999999999999999999988877643
No 106
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.50 E-value=0.56 Score=33.20 Aligned_cols=93 Identities=16% Similarity=0.201 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|+..|.+-... .+.|.+=|..=-.+|++.|+.+.|.+=.+.-++- .|. ...+|..|=.+
T Consensus 99 eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~-----------------yskay~RLG~A 158 (304)
T KOG0553|consen 99 EAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPH-----------------YSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChH-----------------HHHHHHHHHHH
Confidence 444444444332 1246666777778899999999998877765542 232 23689999999
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
|...|++++|.+.|++..+ +.|+..+|-.=++.
T Consensus 159 ~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9999999999999988766 56888887665544
No 107
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.47 E-value=0.037 Score=31.25 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~ 76 (153)
.|..++++ .+.+. .+....-.+-.+|.+.|++++|.++|++
T Consensus 43 ~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 43 EAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 55556655 21111 1233444557889999999999999875
No 108
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.30 E-value=0.093 Score=30.98 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
..+..+......|+..+..+.+.+|.+.+++..|.++|+..+.+- .+....|..+++
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 344455566667778899999999999999999999999997542 233337776665
No 109
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.29 E-value=0.19 Score=29.39 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 047010 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE-HGKIPSRTLYDTLIK 147 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~v~p~~~~~~~li~ 147 (153)
..+..+......|+..+..+.+.+|.+.+++..|.++|+..+. .|. +...|..+++
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3444455556667777999999999999999999999998874 342 4556766665
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.28 E-value=0.55 Score=31.76 Aligned_cols=145 Identities=15% Similarity=-0.010 Sum_probs=74.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCC-hh---hchHH-----------HHHHHHHHHHHcCCCccH--HHHHHHHHHHHhc
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPN-VT---TYTIL-----------EAYEMLMNVKNDGLKPDV--YTYTAVMDGFCKV 64 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~---~~~~l-----------~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~~~ 64 (153)
+.+.|++++|...|+...+.. |+ .. .+..+ .|...++++.+....... ..+..+-.++.+.
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 346788999999999887753 33 21 22111 778888877765432222 2344444444443
Q ss_pred --------CCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-
Q 047010 65 --------GRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG- 134 (153)
Q Consensus 65 --------g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~- 134 (153)
|+.++|.+.|+...+.. |+.. ....+..+........ ...-.+-..+.+.|++.+|...+....+..
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 121 IDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLA-GKELYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 67888899988887653 2211 1111111100000000 011134445667777777777777765431
Q ss_pred -CCCCHHHHHHHHHHhhc
Q 047010 135 -KIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 135 -v~p~~~~~~~li~~~~~ 151 (153)
-......+..+..++.+
T Consensus 198 ~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 198 DTPATEEALARLVEAYLK 215 (235)
T ss_pred CCcchHHHHHHHHHHHHH
Confidence 11123445555555443
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.20 E-value=0.78 Score=33.02 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
+|.+.+++..+.. +.+...+..+-..|...|++++|...+++.....- .|+. ....|-.+..
T Consensus 132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~----------------~~~~~~~la~ 194 (355)
T cd05804 132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML----------------RGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch----------------hHHHHHHHHH
Confidence 6777887777764 33566788888899999999999999998766421 1221 1235667888
Q ss_pred HHHccCcHHHHHHHHHHHHH
Q 047010 113 ALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~ 132 (153)
.+...|++++|..++++...
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhc
Confidence 89999999999999999854
No 112
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.15 E-value=0.76 Score=32.59 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
..|.-+-..+.+.|++++|...|++..+.++ |+..-+.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~ 274 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHR 274 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHH
Confidence 4677777888899999999999998887653 4544444
No 113
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.19 Score=40.76 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHH-----HH------HHHHHHH-----
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVV-----TL------IHLHNVI----- 96 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~-----~~------~~~~~~~----- 96 (153)
.|+++|.+..+.. +.|...=|-+=-+++..|++.+|.++|.+.+.... -+|.. ++ ....+|.
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777666542 34666666677777888888888888888877654 22211 01 1111221
Q ss_pred HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144 (153)
Q Consensus 97 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~ 144 (153)
...-.-+..+.+.|-.++-.+|.+.+|.+.+.........-...-|+.
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 122334555666777777777777777777666555443333444443
No 114
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.98 Score=34.41 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHH--------------HHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTL--------------IHLHN 94 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~~~~~~~~~--------------~~~~~ 94 (153)
++...|++.+.+ ++.-...|+-.-..+...++++.|.+.|+...+. ++..+...+ +...+
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 555666666655 3445577888888888899999999999886553 111222221 33344
Q ss_pred HHHcCCCCcH---hhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 95 VIDIGHIPRT---ITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 95 ~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
++..-++.|. ..|.+|-..-.+.|+.++|.++|++-.
T Consensus 525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4554444444 579999999999999999999998754
No 115
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.89 E-value=1.3 Score=34.11 Aligned_cols=41 Identities=32% Similarity=0.371 Sum_probs=27.9
Q ss_pred CcHhhH--HHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 047010 102 PRTITF--NNVIQALCGVGKIDKALLLLFLMYEHGKIPS-RTLYDT 144 (153)
Q Consensus 102 ~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~-~~~~~~ 144 (153)
|....| .-+-..|-+.|++++|+.+.+...++. |+ ...|.+
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~ 233 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMT 233 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHH
Confidence 444445 444666778999999999999888764 65 334433
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.89 E-value=0.74 Score=31.14 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=75.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChh----hchHH-------------------HHHHHHHHHHHcCCCccHHHH----
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVT----TYTIL-------------------EAYEMLMNVKNDGLKPDVYTY---- 54 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l-------------------~a~~~~~~m~~~g~~~~~~t~---- 54 (153)
|.+.|++++|...++.+.+.. |+.. .+..+ .|.+.++.+....+. +...+
T Consensus 80 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~ 156 (235)
T TIGR03302 80 YYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKK 156 (235)
T ss_pred HHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHH
Confidence 456789999999999998753 3221 12111 455666665544221 11111
Q ss_pred -------------HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010 55 -------------TAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120 (153)
Q Consensus 55 -------------~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 120 (153)
-.+-..|.+.|++++|...++...+..- .|. ....+..+..++.+.|++
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA-----------------TEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc-----------------hHHHHHHHHHHHHHcCCH
Confidence 1344567888999999999999876521 121 234888999999999999
Q ss_pred HHHHHHHHHHHHC
Q 047010 121 DKALLLLFLMYEH 133 (153)
Q Consensus 121 ~~a~~~~~~m~~~ 133 (153)
++|..+++.+...
T Consensus 220 ~~A~~~~~~l~~~ 232 (235)
T TIGR03302 220 DLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.83 E-value=0.86 Score=31.60 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=24.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
++|...|+.+=-+|.+.|++++|..-|.+..+
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 46777777777777788888777777777655
No 118
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.81 E-value=0.56 Score=29.37 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 047010 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85 (153)
Q Consensus 8 ~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~ 85 (153)
..+|..+|..+...- ..-+.-.+...++.+....... .....=.+-..+...|++++|...|+........|+
T Consensus 8 ~~~a~~~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~ 82 (145)
T PF09976_consen 8 AEQASALYEQALQAL-----QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE 82 (145)
T ss_pred HHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH
Confidence 345556666655421 0111113445566666653222 122233344778899999999999999988763232
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 86 VVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.. ....-.+...+...|++++|+..++....
T Consensus 83 l~----------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~ 113 (145)
T PF09976_consen 83 LK----------------PLARLRLARILLQQGQYDEALATLQQIPD 113 (145)
T ss_pred HH----------------HHHHHHHHHHHHHcCCHHHHHHHHHhccC
Confidence 22 22444567788899999999999977433
No 119
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.75 E-value=0.67 Score=29.94 Aligned_cols=68 Identities=24% Similarity=0.205 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
....|..+-..+.+.|++++|...|++..+..-.+.. ....+..+...+.+.|++++|...+.+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND----------------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch----------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3345677777788888999998888887764322210 123677777888888888888888887
Q ss_pred HHHC
Q 047010 130 MYEH 133 (153)
Q Consensus 130 m~~~ 133 (153)
..+.
T Consensus 98 al~~ 101 (172)
T PRK02603 98 ALEL 101 (172)
T ss_pred HHHh
Confidence 7653
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.73 E-value=0.66 Score=29.78 Aligned_cols=71 Identities=7% Similarity=-0.030 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+..-|-.|=-++-..|++++|.+.|....... || |...+--+-.++...|+.+.|..-|+.
T Consensus 68 ~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~d-----------------dp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 68 SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--ID-----------------APQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45556667777778889999999998876654 22 334677777888889999999999987
Q ss_pred HHH-CCCCCCH
Q 047010 130 MYE-HGKIPSR 139 (153)
Q Consensus 130 m~~-~~v~p~~ 139 (153)
... .+-.|..
T Consensus 129 Ai~~~~~~~~~ 139 (157)
T PRK15363 129 VVRICGEVSEH 139 (157)
T ss_pred HHHHhccChhH
Confidence 654 3444443
No 121
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.73 E-value=0.33 Score=26.26 Aligned_cols=55 Identities=25% Similarity=0.396 Sum_probs=43.6
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
|.+.+++++|..+++.+.+.+ | .+...|...-.++.+.|++++|.+.|+...+.+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~--p-----------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD--P-----------------------DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--c-----------------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456788888888888887752 2 366777778888999999999999999988653
No 122
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.69 E-value=0.72 Score=37.68 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~ 74 (153)
+..++|..+|....+.. +-|.+.-|-+ .|..+|.+..+... -+.-+|-.+-.+|...|++-.|.++|
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 34556666666655542 3333333333 66666666665532 12335666666666677777777776
Q ss_pred HHHHH
Q 047010 75 NEAIE 79 (153)
Q Consensus 75 ~~m~~ 79 (153)
+.-.+
T Consensus 704 e~~lk 708 (1018)
T KOG2002|consen 704 ENCLK 708 (1018)
T ss_pred HHHHH
Confidence 65444
No 123
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.68 E-value=0.13 Score=24.02 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
+|+.|=..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888899999999999999999954
No 124
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.55 E-value=0.38 Score=33.87 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=25.1
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.+...|..-++-+.+.++.+.|..+|++....
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 34567888889999999999999999988654
No 125
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.51 E-value=0.5 Score=29.15 Aligned_cols=78 Identities=12% Similarity=0.042 Sum_probs=50.8
Q ss_pred CccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 047010 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE- 79 (153)
Q Consensus 1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~- 79 (153)
|+++.|+.+....+.+..- |+.++...-..- --......|+..+..+++.+|+..|++..|.++.+...+
T Consensus 11 al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 11 ALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred HHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3567777777777665433 333222100000 112234579999999999999999999999999998755
Q ss_pred cCCCchHH
Q 047010 80 RGVTPNVV 87 (153)
Q Consensus 80 ~~~~~~~~ 87 (153)
-+++.+..
T Consensus 82 Y~I~i~~~ 89 (126)
T PF12921_consen 82 YPIPIPKE 89 (126)
T ss_pred cCCCCCHH
Confidence 45555544
No 126
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.49 E-value=1.3 Score=31.96 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=70.1
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhch---HH-----------HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYT---IL-----------EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSN 68 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~l-----------~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~ 68 (153)
..|++++|..+++...+.. +.+...+. .. .+.+.+.. .....|+ ......+-..+...|+++
T Consensus 55 ~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 55 IAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 4688889998888877753 22332322 11 12222222 1112233 344455666788899999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
+|.+.+++..+.. |+ +...+..+-..+...|++++|..++.+..+.
T Consensus 132 ~A~~~~~~al~~~--p~-----------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 132 RAEEAARRALELN--PD-----------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHhhC--CC-----------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 9999999987753 32 2347788888899999999999999987654
No 127
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.42 E-value=0.56 Score=27.66 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.++-.....+.+.|++++|.+.|....+.. |+.. .....+..+...+.+.|+++.|...|+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKST--------------YAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcc--------------ccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 355667778889999999999999997643 2110 112356668888999999999999999987
Q ss_pred HC
Q 047010 132 EH 133 (153)
Q Consensus 132 ~~ 133 (153)
..
T Consensus 67 ~~ 68 (119)
T TIGR02795 67 KK 68 (119)
T ss_pred HH
Confidence 64
No 128
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.56 Score=34.34 Aligned_cols=64 Identities=3% Similarity=0.018 Sum_probs=37.9
Q ss_pred cHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHHccCcHHHHHHHH
Q 047010 50 DVYTYTAVM-DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 50 ~~~t~~~ll-~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~ 127 (153)
|..+|.+++ ++|.+++.++.|++++-++-- +. +.. ....+...|-+++++--|...|
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~------------------e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PS------------------ERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---ch------------------hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554433 456666666666666544421 11 112 3444555677888888888888
Q ss_pred HHHHHCC
Q 047010 128 FLMYEHG 134 (153)
Q Consensus 128 ~~m~~~~ 134 (153)
+.+....
T Consensus 485 d~lE~lD 491 (557)
T KOG3785|consen 485 DELEILD 491 (557)
T ss_pred hHHHccC
Confidence 8877654
No 129
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.17 E-value=0.91 Score=29.13 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.....|..+...+...|++++|+..|++.......+.. ...+|..+-..+.+.|++++|...++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~----------------~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD----------------RSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh----------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566788888888899999999999998765322110 12378888889999999999999998
Q ss_pred HHHHC
Q 047010 129 LMYEH 133 (153)
Q Consensus 129 ~m~~~ 133 (153)
...+.
T Consensus 97 ~Al~~ 101 (168)
T CHL00033 97 QALER 101 (168)
T ss_pred HHHHh
Confidence 88654
No 130
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.10 E-value=1.3 Score=30.94 Aligned_cols=89 Identities=10% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 111 (153)
+|...|+.+...-+... ...+--+-..|...|++++|...|+...+.- |+.. .....+-.+.
T Consensus 161 ~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~--------------~~~dAl~klg 224 (263)
T PRK10803 161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSP--------------KAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCc--------------chhHHHHHHH
Confidence 44445555554422111 2456667778889999999999999987642 1110 0112444455
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010 112 QALCGVGKIDKALLLLFLMYEHGKIPSRT 140 (153)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~~ 140 (153)
..+-..|+.++|..+|+...+. .|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 5677899999999999988764 35443
No 131
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.99 E-value=2.8 Score=34.13 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=53.7
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-HH--------HHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EA--------YEMLMNVKNDGL-KPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~a--------~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
|++ |++++|.+++.+..+.. +.+...|-.| .. -.+...+..+.. +.|.--|..+-....+.|+++.|.
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 344 99999999999988864 3444555555 11 112223333323 346688999999999999999999
Q ss_pred HHHHHHHHcC
Q 047010 72 ELLNEAIERG 81 (153)
Q Consensus 72 ~l~~~m~~~~ 81 (153)
-.|.+..+..
T Consensus 228 ~cy~rAI~~~ 237 (895)
T KOG2076|consen 228 YCYSRAIQAN 237 (895)
T ss_pred HHHHHHHhcC
Confidence 9999987764
No 132
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.98 E-value=2 Score=32.40 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHccCcHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT-ITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
.+...|+.+=.+|.+.|++++|...|++-.+. .|+.. .. .+|..+-.+|.+.|++++|...+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~a---------------eA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPD---------------EAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCch---------------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35578999999999999999999999997664 23311 01 35889999999999999999999
Q ss_pred HHHHHC
Q 047010 128 FLMYEH 133 (153)
Q Consensus 128 ~~m~~~ 133 (153)
++..+.
T Consensus 136 rrALel 141 (453)
T PLN03098 136 RTALRD 141 (453)
T ss_pred HHHHHh
Confidence 988764
No 133
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.98 E-value=0.19 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.1
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
+|+.+-..|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788999999999999999999854
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.80 E-value=3.1 Score=33.96 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=71.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~ 72 (153)
.+++++|..-...+.++ -||.-..-.+ +|+.+++....-+.. |..|..++-.+|...|+.++|..
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45666777776666665 2544333333 556666655554433 77888888888888888888888
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 73 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
++++.... - |+..-...+.-+|.+.+.+.+-..+--+|-+ .+.-+...|.++++..
T Consensus 99 ~Ye~~~~~--~------------------P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 99 LYERANQK--Y------------------PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHhh--C------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHH
Confidence 88876543 2 3334555666677777776654444444432 2233444444555443
No 135
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.76 E-value=0.28 Score=23.15 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
..+++.|-..|...|++++|++++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35789999999999999999999998765
No 136
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.74 E-value=1.9 Score=31.23 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=85.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l 73 (153)
.++++|..++....+.+ |+.+--+.+ .|.+.+....+.+..--..+-..|..+|.+.|+.++.+..
T Consensus 194 ~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45566666666655542 333322222 7778888888877666778889999999999999999999
Q ss_pred HHHHHHcCCCchHH--HHHHHHH----------H-HHcCCCCcHhhHHHHHHHHHcc---CcHHHHHHHHHHHHHCC
Q 047010 74 LNEAIERGVTPNVV--TLIHLHN----------V-IDIGHIPRTITFNNVIQALCGV---GKIDKALLLLFLMYEHG 134 (153)
Q Consensus 74 ~~~m~~~~~~~~~~--~~~~~~~----------~-~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 134 (153)
+..+.+....++.. .++++.. + ..-.-+|+...+..+|+.-..- |..++-+.+++.|....
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 99998865544444 3322211 1 1234579999999999876533 34677778888886543
No 137
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.69 E-value=0.95 Score=27.66 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..+-.+-+.+...|++++|+.+|++....- |+... .....++ +--++...|+.++|...+-...
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~------------~~~l~~f--~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEF--PDDEL------------NAALRVF--LALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc------------cHHHHHH--HHHHHHHCCCHHHHHHHHHHHH
Confidence 345556777889999999999999887642 22000 0011222 2236667899999999887654
Q ss_pred HCCCCCCHHHHHHHHHHhhc
Q 047010 132 EHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 132 ~~~v~p~~~~~~~li~~~~~ 151 (153)
. ++...|.--|..|..
T Consensus 103 a----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 103 A----ETLPRYRRAIRFYAD 118 (120)
T ss_pred H----HHHHHHHHHHHHHHh
Confidence 3 344477777776654
No 138
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.61 E-value=2.7 Score=32.55 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+...|.++--.....|++++|...+++..... |+...|..+-..+...|+.++|.+.++
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------------------ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------------------MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455777777666667789999999999987764 334489999999999999999999999
Q ss_pred HHHHC
Q 047010 129 LMYEH 133 (153)
Q Consensus 129 ~m~~~ 133 (153)
+....
T Consensus 478 ~A~~L 482 (517)
T PRK10153 478 TAFNL 482 (517)
T ss_pred HHHhc
Confidence 87654
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=2 Score=30.88 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=72.3
Q ss_pred ccCChHHHHHHHHHHHH-CCCCCChhhchHH----------HHHHHHHHHHHcCCC-------------ccHH-------
Q 047010 4 NKNDFFEARKVIDYMFD-NGYHPNVTTYTIL----------EAYEMLMNVKNDGLK-------------PDVY------- 52 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l----------~a~~~~~~m~~~g~~-------------~~~~------- 52 (153)
+.|++++|.+-|....+ +|..|-. .|+.. .|+....++.++|++ ||..
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpll-AYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLL-AYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchh-HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 56777777777776665 3555543 33322 677777777776652 2321
Q ss_pred -HHHHHHHH-------HHhcCCHHHHHHHHHHHHH-cCCCchHHHH----------------HHHHHHHHcCCCCcHhhH
Q 047010 53 -TYTAVMDG-------FCKVGRSNEVMELLNEAIE-RGVTPNVVTL----------------IHLHNVIDIGHIPRTITF 107 (153)
Q Consensus 53 -t~~~ll~~-------~~~~g~~~~a~~l~~~m~~-~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 107 (153)
.-+.++.+ +.+.|+++.|.+-+-.|.- .....|++|+ .-+..+..... -...||
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETF 313 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETF 313 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHH
Confidence 12333333 4567777777777666632 2233444444 22222333322 345688
Q ss_pred HHHHHHHHccCcHHHHHHHHHH
Q 047010 108 NNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~ 129 (153)
..++--||+..-++.|.+++-+
T Consensus 314 ANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhh
Confidence 8888889999888888887754
No 140
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.48 E-value=0.27 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5777889999999999999999999886
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.45 E-value=3.8 Score=33.88 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-HHHHHHHHc-CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
.+.-.+.-|...+++.++++++.++..... -+...+ .+.+.+... +...-+.++--+-..|-..++|+++..+|+.+
T Consensus 171 m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 171 YLKKAIYRFIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 334444445555555555565555554321 111121 333444432 55666778888889999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhh
Q 047010 131 YEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 131 ~~~~v~p~~~~~~~li~~~~ 150 (153)
.+..- -|.....-++..|.
T Consensus 250 L~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HhcCC-cchhhHHHHHHHHH
Confidence 87642 24555555555553
No 142
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.40 E-value=1.3 Score=35.24 Aligned_cols=61 Identities=11% Similarity=0.248 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..||.+-.+|.+.|+-.+|...+++-.+.+.. +...|.--+....+.|.+++|+..+.++.
T Consensus 554 eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-------------------~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 554 EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-------------------HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-------------------CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 44555555555555555555555555554422 23356666667777777887777777664
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.32 E-value=3 Score=32.30 Aligned_cols=124 Identities=11% Similarity=0.216 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHC-CCCCChhhchHH----------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047010 8 FFEARKVIDYMFDN-GYHPNVTTYTIL----------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEVMELLN 75 (153)
Q Consensus 8 ~~~a~~~~~~m~~~-~~~~~~~~~~~l----------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~a~~l~~ 75 (153)
.+.....++.+... .+.|+..-.+.+ .|-.+|.+..+.+..+ +++.++++|.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45566666666554 456665444444 6667777777777776 78888999988875 68888999998
Q ss_pred HHHH-cCCCchHHH-H--------------HHHHHHHHcCCCC--cHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 76 EAIE-RGVTPNVVT-L--------------IHLHNVIDIGHIP--RTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 76 ~m~~-~~~~~~~~~-~--------------~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.-.+ .|-.|-... | .++.+.+..+..| ....|..+|+-=...|+...+..+-+++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7544 343333221 1 3444455554444 347899999999999999999999887754
No 144
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.30 E-value=1.9 Score=29.95 Aligned_cols=66 Identities=20% Similarity=0.103 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.|....+.......+.|++.+|...|++...- -++ |..+|+.+-.+|-+.|++++|..-+.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~------------------d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APT------------------DWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCC------------------ChhhhhHHHHHHHHccChhHHHHHHH
Confidence 34456667888899999999999999998643 234 44588888888888888888888887
Q ss_pred HHHHC
Q 047010 129 LMYEH 133 (153)
Q Consensus 129 ~m~~~ 133 (153)
+..+.
T Consensus 159 qAl~L 163 (257)
T COG5010 159 QALEL 163 (257)
T ss_pred HHHHh
Confidence 77654
No 145
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.29 E-value=3.6 Score=33.08 Aligned_cols=80 Identities=8% Similarity=0.040 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
+|..+++...+. .|| ......+...+.+.+++++|+..+++.... .|+ +......+-.
T Consensus 104 ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~-----------------~~~~~~~~a~ 162 (694)
T PRK15179 104 EGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSS-----------------SAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCC-----------------CHHHHHHHHH
Confidence 555555555554 343 345566667777777777777777776654 233 2246777888
Q ss_pred HHHccCcHHHHHHHHHHHHHCC
Q 047010 113 ALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
++.+.|++++|..+|++....+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC
Confidence 8999999999999999998744
No 146
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.19 E-value=1.4 Score=27.96 Aligned_cols=99 Identities=10% Similarity=0.098 Sum_probs=71.6
Q ss_pred HHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010 40 MNVKNDGLKPDV--YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117 (153)
Q Consensus 40 ~~m~~~g~~~~~--~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 117 (153)
..|++.+..++. ...|++++=....+++.....+++.+..- .++.. .-..+...|.+++.+.++.
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l--~~~~~-----------~~~~~~ssf~~if~SlsnS 92 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL--NTDNI-----------IGWLDNSSFHIIFKSLSNS 92 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh--hHHHH-----------hhhcccchHHHHHHHHccC
Confidence 334555555555 44688888888888888888888887321 11111 0123456899999999888
Q ss_pred Cc-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 118 GK-IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 118 g~-~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
.- ---+..+|+-|++.+.+++..-|..+|+++.+
T Consensus 93 sSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 93 SSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 76 44577788999888899999999999999865
No 147
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.16 E-value=4 Score=33.31 Aligned_cols=143 Identities=14% Similarity=0.135 Sum_probs=87.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhc------hHH----------HHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCC
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTY------TIL----------EAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGR 66 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~------~~l----------~a~~~~~~m~~-~g~~~~~~t~~~ll~~~~~~g~ 66 (153)
+.|+...|..-|.++.... +|...-+ ..+ .|++.+..-.. .+-.-+..+++++...|.+...
T Consensus 253 ~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q 331 (895)
T KOG2076|consen 253 KTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ 331 (895)
T ss_pred HhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH
Confidence 4566777777777666642 1211111 000 33333333322 2233455678888999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHH-------------------------------------------HHHHHHHHcCCC--
Q 047010 67 SNEVMELLNEAIERGVTPNVVTL-------------------------------------------IHLHNVIDIGHI-- 101 (153)
Q Consensus 67 ~~~a~~l~~~m~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~-- 101 (153)
++.|......+......+|..-+ .+++........
T Consensus 332 ~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 332 SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 99999988888774444444433 233334444433
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
-+...|.-+..+|-..|++++|+.+|..+...-..-+...|--+-.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 3456788889999999999999999999877654445444444433
No 148
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.15 E-value=0.24 Score=27.24 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=38.7
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCC-Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-KPD-VYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~-~~~-~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.+.|++++|...|+...+ +.+.+ |. .|+ ..+++.+-.+|...|++++|++.+++-.+
T Consensus 16 ~~~~~~~~A~~~~~~al~-----------------~~~~~---~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 16 RELGRYDEALDYYEKALD-----------------IEEQL---GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHTT-HHHHHHHHHHHHH-----------------HHHHT---TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-----------------HHHHH---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455677777777766654 21111 11 133 57899999999999999999999998643
No 149
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.07 E-value=3.3 Score=32.05 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHH-cC-CCCcHhhHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVID-IG-HIPRTITFNNVIQALC 115 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~-~~-~~~~~~~~~~li~~~~ 115 (153)
++.-+-.-|.+.|+.++|++++++..+. .|+..-+ ..+..|.. .. -..|-..=+-....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 4466677799999999999999988776 4554322 11122221 11 1234455566667777
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCC
Q 047010 116 GVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 116 ~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
++|++++|..++......+..|-
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcc
Confidence 88888888888887766555443
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.05 E-value=2.2 Score=31.22 Aligned_cols=73 Identities=15% Similarity=0.039 Sum_probs=53.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
..+...|++++|+++|++..+.. |+ +...|..+-.+|.+.|++++|...+++..+.. ..+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~-----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~ 69 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PN-----------------NAELYADRAQANIKLGNFTEAVADANKAIELD-PSL 69 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 45677899999999999998753 32 33478888889999999999999999997754 124
Q ss_pred HHHHHHHHHHhhc
Q 047010 139 RTLYDTLIKKLDQ 151 (153)
Q Consensus 139 ~~~~~~li~~~~~ 151 (153)
...|..+-.+|.+
T Consensus 70 ~~a~~~lg~~~~~ 82 (356)
T PLN03088 70 AKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555444443
No 151
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.84 E-value=1.7 Score=28.22 Aligned_cols=87 Identities=14% Similarity=0.217 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHHcCC
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVIDIGH 100 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~~~ 100 (153)
.+.++-+.+.+++|+...|..+|+.+.+.|++... ..+...++.+|+... .+.-.|..+-.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45666667778888888888888888888875543 444455555555543 12222222111
Q ss_pred CCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 101 IPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
..+..+++.+...|++-+|+++.+..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 15677778888888888888888765
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.82 E-value=1.4 Score=26.98 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=48.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.++-..|+.++|..+|++-...|...+.. ...+-.+-+.+...|++++|..+|+.....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~----------------~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADR----------------RRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778899999999999999988766543 235667888899999999999999988653
No 153
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.39 E-value=2.1 Score=28.05 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..|..+-+-|.+.|+.++|.+.|.++......+... ...+-.+|......+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~----------------id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK----------------IDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 568889999999999999999999999887766655 3455566666666666666666655554
No 154
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=2.3 Score=30.61 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 83 (153)
.|.+-|+.-.+-+--.....||..+.-| +.|+.+.|++...++.++|++
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 6777787766654334457788777555 568999999999999998864
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.20 E-value=2.9 Score=34.14 Aligned_cols=95 Identities=21% Similarity=0.333 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDG--FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~--~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 111 (153)
.|++....+..+ .||. .|..++.+ ..|.|..++|..+++.....+. + |..|..++-
T Consensus 27 kal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~-----------------D~~tLq~l~ 84 (932)
T KOG2053|consen 27 KALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG--T-----------------DDLTLQFLQ 84 (932)
T ss_pred HHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--C-----------------chHHHHHHH
Confidence 677777776665 2443 35555555 4578899999988887654332 2 556999999
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
..|...|+.++|..++++... ..|+..-...++.+|.|.
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~ 123 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVRE 123 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHH
Confidence 999999999999999998765 358888888888888764
No 156
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=92.17 E-value=0.55 Score=33.33 Aligned_cols=47 Identities=30% Similarity=0.381 Sum_probs=38.4
Q ss_pred CCcHhh-HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 101 IPRTIT-FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 101 ~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
.||+.+ |+.-|....+.||+++|+.++++.+..|+.--..+|-.-++
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 455555 78999999999999999999999999998776666655443
No 157
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.93 E-value=5.4 Score=31.76 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=72.0
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChh-hchHH-----------HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVT-TYTIL-----------EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l-----------~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~~a 70 (153)
..+.+++|...|...... +|+.. .+..+ .|...+++-... +|+ ...|+.|-+++-..|++.+|
T Consensus 264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHH
Confidence 456677777777766653 45543 33322 556666655543 344 35678888888888888888
Q ss_pred HHHHHHHHHcCC-CchHHHH-----------HHHHHHH--HcCCCCcH-hhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010 71 MELLNEAIERGV-TPNVVTL-----------IHLHNVI--DIGHIPRT-ITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 71 ~~l~~~m~~~~~-~~~~~~~-----------~~~~~~~--~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
.+.+.+.....- -+|.-.- +-...+. ...+.|.. ...|-+-..|-+.|++++|..-+++... |
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 888877665431 1221110 0111111 11223332 3466777777777888887777776544 4
Q ss_pred CCC
Q 047010 136 IPS 138 (153)
Q Consensus 136 ~p~ 138 (153)
.|+
T Consensus 418 ~P~ 420 (966)
T KOG4626|consen 418 KPT 420 (966)
T ss_pred Cch
Confidence 454
No 158
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.92 E-value=5.4 Score=31.76 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCchHHHHHHHH----------------HHHHcCCC--CcH--h
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG------VTPNVVTLIHLH----------------NVIDIGHI--PRT--I 105 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~------~~~~~~~~~~~~----------------~~~~~~~~--~~~--~ 105 (153)
..-+--|.-+++.+++++|-+.+...+... .+.+.-.+..+. .++..|+. +|. .
T Consensus 170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~ 249 (835)
T KOG2047|consen 170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGF 249 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHH
Confidence 335566777788888888888877765432 111111221111 12222222 222 5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
.|++|.+.|.+.|.++.|.+++++-... ..++.-|+.+.++|++
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 7999999999999999999999876543 3466777777777753
No 159
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.92 E-value=0.48 Score=35.73 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
-...|.+.|+.-.+...++.|..+|-+..+.|+.. +++.+++++|.-+| .|+..-|.++|+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~-----------------h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG-----------------HHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC-----------------cceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 34678999999999999999999999999988322 34456666666665 345555555554
No 160
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.73 E-value=0.56 Score=22.04 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.+++.+-..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999998753
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.72 E-value=2.3 Score=30.74 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=20.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLN 75 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~ 75 (153)
-||..-|-.-|.+++..++|++-.++..
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~ 232 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAK 232 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4677777777777777777777766544
No 162
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.71 E-value=0.85 Score=22.14 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=25.4
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6778889999999999999999999875
No 163
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=1.5 Score=31.69 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.++.++.+-.+.|+-||.++.+.+|+.+.+.++..+|..+.-.|...
T Consensus 118 ~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 118 KAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777788888999999999999999999999999998887776554
No 164
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.56 E-value=5.6 Score=34.48 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=86.0
Q ss_pred ccCChHHHHHHHHHHHHC-CCCCCh---hhchHH-----------HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCH
Q 047010 4 NKNDFFEARKVIDYMFDN-GYHPNV---TTYTIL-----------EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRS 67 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~-~~~~~~---~~~~~l-----------~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~ 67 (153)
+.++.++|++++++.... +++-.. ..|.++ ...+.|.+..+. .|. -.|..|..-|-+.+..
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~~L~~iy~k~ek~ 1546 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHLKLLGIYEKSEKN 1546 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHhhcc
Confidence 456778888888887763 221111 233333 345566665554 344 5688899999999999
Q ss_pred HHHHHHHHHHHHc-CCCchHHHH---------------HHHHHHHHcCC-CCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 68 NEVMELLNEAIER-GVTPNVVTL---------------IHLHNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 68 ~~a~~l~~~m~~~-~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
++|-++++.|.+. |..+...+. .++.+.+..-. +-.+......+..--+.|+.+.+.-+|+..
T Consensus 1547 ~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1547 DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 9999999999774 423332221 22222222111 123344555566666788888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHhhcC
Q 047010 131 YEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 131 ~~~~v~p~~~~~~~li~~~~~~ 152 (153)
...- +--.+.|+..|++=.++
T Consensus 1627 l~ay-PKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1627 LSAY-PKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred HhhC-ccchhHHHHHHHHHHcc
Confidence 5432 12356677777665544
No 165
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=90.92 E-value=0.31 Score=30.33 Aligned_cols=32 Identities=16% Similarity=0.506 Sum_probs=25.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010 63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114 (153)
Q Consensus 63 ~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 114 (153)
.-|.-..|-.+|++|+++|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--------------------dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--------------------DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--------------------cHHHHHHHh
Confidence 34455668899999999999998 788887764
No 166
>PRK11189 lipoprotein NlpI; Provisional
Probab=90.86 E-value=4.4 Score=28.76 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|...|++..+.. +.+...|+.+-..+...|++++|.+.|++..+. .|+ +..+|..+-..
T Consensus 82 ~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~-----------------~~~a~~~lg~~ 141 (296)
T PRK11189 82 LARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT-----------------YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------CHHHHHHHHHH
Confidence 4444454444432 124456666666666666666666666665542 222 23577778888
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 047010 114 LCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~ 133 (153)
+...|++++|...|+...+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 88899999999999988764
No 167
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=4.3 Score=28.42 Aligned_cols=126 Identities=11% Similarity=0.088 Sum_probs=85.0
Q ss_pred cCChHHHHHHHHHHHHC---C-CCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH
Q 047010 5 KNDFFEARKVIDYMFDN---G-YHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRS 67 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~---~-~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~g~~ 67 (153)
..+.++..+++.++... | ..++..+.... .|...++++...- |.+.-...+=.. +=-.|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 35677888888887763 4 45555543221 7777888877764 433222222222 2346889
Q ss_pred HHHHHHHHHHHHcCCCchHHHH--------------HHHHHHHH--cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 68 NEVMELLNEAIERGVTPNVVTL--------------IHLHNVID--IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
++|.++++.+.+.. +.|.+++ ..++.+-+ ..+..|...|--+-.-|...|++++|..-++++.
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999998876 5555555 33333332 3456788899999999999999999999999887
Q ss_pred HC
Q 047010 132 EH 133 (153)
Q Consensus 132 ~~ 133 (153)
-.
T Consensus 182 l~ 183 (289)
T KOG3060|consen 182 LI 183 (289)
T ss_pred Hc
Confidence 53
No 168
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.54 E-value=6.5 Score=30.21 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~ 89 (153)
.+-++|.+-.+ -+|+...|.+.|+.=.+-..++.|..+++.-+-. .|+..++
T Consensus 159 gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~w 210 (677)
T KOG1915|consen 159 GARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNW 210 (677)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHH
Confidence 44444443322 3699999999999999999999999999987654 3776666
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.36 E-value=4.2 Score=30.78 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--CCcHhhH
Q 047010 34 EAYEMLMNVKNDGLKPDV----YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH--IPRTITF 107 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~----~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 107 (153)
+|+..+++-... .|+. .+|..+-.+|.+.|+.++|++.+++..+.+ .+. |..+. .+..+ -.+...|
T Consensus 93 EAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~---f~~i~--~DpdL~plR~~pef 164 (453)
T PLN03098 93 DALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLK---FSTIL--NDPDLAPFRASPEF 164 (453)
T ss_pred HHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chh---HHHHH--hCcchhhhcccHHH
Confidence 445555444433 3443 569999999999999999999999998752 111 11000 01111 1133467
Q ss_pred HHHHHHHHccCc
Q 047010 108 NNVIQALCGVGK 119 (153)
Q Consensus 108 ~~li~~~~~~g~ 119 (153)
..++....+.|.
T Consensus 165 ~eLlee~rk~G~ 176 (453)
T PLN03098 165 KELQEEARKGGE 176 (453)
T ss_pred HHHHHHHHHhCC
Confidence 777777777774
No 170
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.27 E-value=2.2 Score=30.86 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=69.2
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHH---------------HHHHHHHHcCCCC
Q 047010 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG---VTPNVVTL---------------IHLHNVIDIGHIP 102 (153)
Q Consensus 41 ~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~---~~~~~~~~---------------~~~~~~~~~~~~~ 102 (153)
.-+..|......+...++..-....+++.+..++-+++... ..|+...+ ..+.+=...|+-|
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhcccc
Confidence 33456667788888888888888889999999988886632 22333333 2333345678889
Q ss_pred cHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
|.++++.+|+.+.+.+++.+|..+--.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999988776543
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.10 E-value=4.7 Score=27.86 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=32.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCh-hhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNV-TTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC 62 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 62 (153)
+.|++++|...|+.+.... |+. ...... .|...+++..+.-+.....-|.-.+.|.+
T Consensus 44 ~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 4678888888888887753 322 111111 67777777766644433444444444443
No 172
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.00 E-value=8.5 Score=30.72 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=51.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCh-hhchHH-----------HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNV-TTYTIL-----------EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l-----------~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a 70 (153)
..|+.-.|..-|++.++- .|+- ..|-.| .|...+.+-. ...|+. +.|..|-..|-..|.+|.|
T Consensus 230 ~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl--~lrpn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL--NLRPNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred hcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH--hcCCcchhhccceEEEEeccccHHHH
Confidence 467888888889888874 4542 222222 4444443333 345654 7788888899999999999
Q ss_pred HHHHHHHHHcC
Q 047010 71 MELLNEAIERG 81 (153)
Q Consensus 71 ~~l~~~m~~~~ 81 (153)
.+.+++..+..
T Consensus 306 I~~Ykral~~~ 316 (966)
T KOG4626|consen 306 IDTYKRALELQ 316 (966)
T ss_pred HHHHHHHHhcC
Confidence 99999987753
No 173
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=89.39 E-value=3.6 Score=25.55 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
..+..+....+.|+..+..+-+.+|.+.+|+--|.++|+.++.+ +.+....|-.+++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 66777888899999999999999999999999999999999753 2344445666554
No 174
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.36 E-value=2.8 Score=24.94 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.+-+.++......|+.....+.|.+|.|.+++..|.++|+-.+..
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344556677778899999999999999999999999999988664
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=89.31 E-value=4.1 Score=26.07 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010 34 EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 111 (153)
+|+..+++.......+ ...+|..+-..|.+.|+.++|++.+++..+. .|+.. .++..+.
T Consensus 53 ~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~-----------------~~~~~la 113 (168)
T CHL00033 53 EALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLP-----------------QALNNMA 113 (168)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcH-----------------HHHHHHH
Confidence 6666666665443222 2357888999999999999999999998764 23221 2344444
Q ss_pred HHHH-------ccCcHHHHHHHHHHH
Q 047010 112 QALC-------GVGKIDKALLLLFLM 130 (153)
Q Consensus 112 ~~~~-------~~g~~~~a~~~~~~m 130 (153)
..+. ..|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 4444 788888666666543
No 176
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.04 E-value=3.8 Score=25.33 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=16.7
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 118 g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
++++.|.+++.+ .-+...|..++..+...
T Consensus 110 ~d~~~a~~~~~~------~~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 110 GNYEKAIEYFVK------QNNPELWAEVLKALLDK 138 (140)
T ss_pred cCHHHHHHHHHh------CCCHHHHHHHHHHHHcc
Confidence 445555554443 23567888887776543
No 177
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.60 E-value=1.3 Score=21.92 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5678999999999999999998654
No 178
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.25 E-value=7.3 Score=27.63 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH----------------HHHHHHH-
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNVI- 96 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~----------------~~~~~~~- 96 (153)
-...++.++.+...+.+..--..+.+.-.+.|+.+.|...|+...+.....+.-.+ +.+....
T Consensus 195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 45566667777666677888888889999999999999999977654323322222 1222211
Q ss_pred -HcCC---CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 97 -DIGH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 97 -~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
+... ..|.+.-|.-.-.....|+..+|.+.++.|++.- |...+-.
T Consensus 275 ~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 275 FTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred HhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 1122 2234444444444455789999999999998753 4444444
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=88.18 E-value=5.1 Score=25.78 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
+|...+++.......++ ...|..+-..+.+.|++++|...+++..+.
T Consensus 53 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788877765543332 467888999999999999999999998764
No 180
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.18 E-value=4.7 Score=25.38 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=64.2
Q ss_pred cCChHHHHHHHHHHHHCC-C-CCChhhchHH---HHHHHHHHHHHcCC--------------------CccHHHHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNG-Y-HPNVTTYTIL---EAYEMLMNVKNDGL--------------------KPDVYTYTAVMD 59 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~l---~a~~~~~~m~~~g~--------------------~~~~~t~~~ll~ 59 (153)
.|++++..++.....++. + +.|=+..|.+ +...++.-+..-|- ..++.-.+..++
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ALd 94 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLALD 94 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHHHH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHHHH
Confidence 578888888888887752 1 1111222333 22233333333332 123344555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136 (153)
Q Consensus 60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~ 136 (153)
...+.|.-|.-.++.+.+.+.+ +++....-.+-.+|.+.|+..++.+++++.-+.|+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~-------------------~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNE-------------------EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------------------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhccHHHHHHHHHHHhhcc-------------------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 6666777777777777665432 233346778899999999999999999999888863
No 181
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.17 E-value=2.2 Score=21.42 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
..++.+. +.|-.+++..+++.|.+.|+..+...|..+++.
T Consensus 7 GiL~~Ak-~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 7 GILLLAK-RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHH-HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3344444 678888999999999999999999999888764
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.10 E-value=2.6 Score=22.29 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhh
Q 047010 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS-RTLYDTLIKKLD 150 (153)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~-~~~~~~li~~~~ 150 (153)
..+|..+-..+.+.|++++|...|.+..+.. |+ ...|..+=.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~ 48 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYM 48 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 4578888899999999999999999998754 54 344444444433
No 183
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.94 E-value=1.3 Score=18.85 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 047010 54 YTAVMDGFCKVGRSNEVMELLN 75 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~ 75 (153)
...+-..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4556778999999999999876
No 184
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.73 E-value=7.2 Score=26.93 Aligned_cols=124 Identities=16% Similarity=0.064 Sum_probs=83.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChh-hch-----HH------HHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVT-TYT-----IL------EAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSN 68 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~-----~l------~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~g~~~ 68 (153)
|-+.|..+.|.+-|+...+.. |+.. +.| .+ ++...|++-... -...-..||..+--|..+.|+.+
T Consensus 79 Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 79 YQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred HHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCch
Confidence 445688888999999888753 3322 222 11 777778776655 33335578999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
.|.+.|++-.+..-..+ -+.-.+....-+.|++..|..+++.-...+. ++..+.-..|+
T Consensus 157 ~A~~~l~raL~~dp~~~-------------------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~ir 215 (250)
T COG3063 157 QAEEYLKRALELDPQFP-------------------PALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIR 215 (250)
T ss_pred hHHHHHHHHHHhCcCCC-------------------hHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHH
Confidence 99999999877642221 1344566666667777777777776655543 66665555444
No 185
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.52 E-value=8.5 Score=27.56 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHCCC---CCChhhchHH-------------HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCC--H
Q 047010 8 FFEARKVIDYMFDNGY---HPNVTTYTIL-------------EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGR--S 67 (153)
Q Consensus 8 ~~~a~~~~~~m~~~~~---~~~~~~~~~l-------------~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~--~ 67 (153)
..+|..+|+.|++... .++-..+..+ .+..+++.+...|... +.+..+.++..+..... +
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v 198 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKV 198 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHH
Confidence 4579999999999752 3333444444 6778888888888765 33555555555544444 3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHH--HcCCCCcHhhHHHHHHHHHccCc
Q 047010 68 NEVMELLNEAIERGVTPNVVTLIHLHNVI--DIGHIPRTITFNNVIQALCGVGK 119 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~ 119 (153)
..+.++++.+.+.|+++....|..+--+. ..+..-......-+++.+++...
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k~ 252 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQKG 252 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCcc
Confidence 48999999999999887766543222221 11111233444455555554444
No 186
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.40 E-value=4.2 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.+-++++......|+...-.+.+.+|.|.+++..|.++|+-.+.
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455666677889999999999999999999999999998764
No 187
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.55 E-value=13 Score=28.58 Aligned_cols=111 Identities=14% Similarity=0.313 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------------HHHHHHHHc
Q 047010 34 EAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------IHLHNVIDI 98 (153)
Q Consensus 34 ~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------------~~~~~~~~~ 98 (153)
.|..+|.+..+.| +.+++..++++|.-++. |+..-|.++|+.-.+. -||...| .-++.+++.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4556666666776 56788888888887764 5777788888765443 2333333 111222221
Q ss_pred CC---CCc--HhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 99 GH---IPR--TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 99 ~~---~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
.+ ..+ ...|..+|+.-...|+...+..+-++|.+. .|...+...+...|
T Consensus 492 sv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 492 SVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 11 122 358999999999999999888888888763 56665555555444
No 188
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.21 E-value=1.7 Score=23.16 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.|-.-.=.+|.||.+.|++++|.++++++.+
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555566789999999999999999998865
No 189
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=86.16 E-value=16 Score=29.41 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
.+..++.+.++.... +...|-+-+..-+.+..++.|..+|.+..
T Consensus 602 ~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 602 AARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 334444444443221 44455555555555555555555555543
No 190
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=86.07 E-value=9.4 Score=30.73 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=28.7
Q ss_pred CCCcH-hhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 100 HIPRT-ITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 100 ~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
..||. ..||.+-.+|.+.|+-.+|...+++..+.+
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 34544 469999999999999999999999887765
No 191
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.92 E-value=13 Score=27.94 Aligned_cols=111 Identities=20% Similarity=0.109 Sum_probs=65.1
Q ss_pred HHHHHHHHHHH---cCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc---CCCCcHhh
Q 047010 34 EAYEMLMNVKN---DGL-KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI---GHIPRTIT 106 (153)
Q Consensus 34 ~a~~~~~~m~~---~g~-~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 106 (153)
+...++.+... .|+ ..+......++..+ .|+...++.+++.....+...+... +..+... ....+...
T Consensus 155 ~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~---v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 155 DIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLEL---LEEALQKRAARYDKDGDE 229 (413)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHH---HHHHHhhhhhccCCCccH
Confidence 44455554432 243 45555566665543 7899999999998766533333333 3333221 11122223
Q ss_pred HHHHHHHHHc---cCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 107 FNNVIQALCG---VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 107 ~~~li~~~~~---~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
.--+++++.+ ..+++.|+..+..|.+.|..|....-..++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444 478999999999999999888766555555443
No 192
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.83 E-value=2.2 Score=19.06 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.+|..+-.+|...|++++|++.|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788889999999999999999998764
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=85.72 E-value=6.4 Score=28.49 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=58.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhc-hHH------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTY-TIL------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~ 76 (153)
..|+...|.++-.+.+ -|+..-| ..+ .-++-+.++... +.++.-|...+.+|.+.|+..+|..+...
T Consensus 189 ~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 189 EMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 4566666655544432 2444333 223 222333333332 34569999999999999999999999888
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 77 AIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 77 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
+ .+..-+..|.++|++.+|.+.-
T Consensus 263 ~----------------------------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 263 I----------------------------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred C----------------------------ChHHHHHHHHHCCCHHHHHHHH
Confidence 2 3346788888999998887653
No 194
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=85.55 E-value=18 Score=29.39 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=62.3
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
...++.+++ ++-...+.-+-|-...+..+ .-.-.+.++....++-|...|..+.-+..+.|+++.+-+.|++.....
T Consensus 276 ~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~ 353 (799)
T KOG4162|consen 276 LPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS 353 (799)
T ss_pred CCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 344555555 33333333333443333333 223344455555566799999999999999999999999999876533
Q ss_pred CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
..- ...|..+-..|..+|.-..|..+++.-
T Consensus 354 ~~~-------------------~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 354 FGE-------------------HERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred hhh-------------------HHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 211 124555555555555555555555443
No 195
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=85.51 E-value=5 Score=22.98 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (153)
...+|..-+..-.... .++. ++|+--...|+..|+.+|+++.++.+.++.|+.+
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI 62 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAI 62 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHH
Confidence 3445555443322222 2222 7888888889999999888888888888877653
No 196
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.26 E-value=4.9 Score=22.64 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=38.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
+..| ...+-++|+..+...++.-..+... -.+...++.+|+..|++.+.+.+-.
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~r----------------f~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDR----------------FRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 6667788888888877654333222 2589999999999999998887653
No 197
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.05 E-value=6 Score=32.25 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=18.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
.++-.|..|.+.|+|+.|.++-.+.
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHh
Confidence 4566777888888888887776554
No 198
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.75 E-value=2.9 Score=29.85 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=34.2
Q ss_pred CCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH
Q 047010 47 LKPDVYT-YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87 (153)
Q Consensus 47 ~~~~~~t-~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 87 (153)
+.||..+ |+..|..-.+.||+++|++++++..+.|+.--..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~ 293 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARS 293 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHH
Confidence 3466666 5799999999999999999999999999865444
No 199
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.72 E-value=1.9 Score=18.91 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=20.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
+-.++.+.|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677899999999999998764
No 200
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.46 E-value=25 Score=30.08 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=12.3
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.|.-+|+...+.|.|++-.+++.-.++
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 201
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.41 E-value=13 Score=26.61 Aligned_cols=64 Identities=6% Similarity=-0.005 Sum_probs=48.8
Q ss_pred HHHHHHH-HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhcCC
Q 047010 90 IHLHNVI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH-GKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~v~p~~~~~~~li~~~~~~g 153 (153)
+.+..+. +.+..++..+..++|..++..++|..-+++....... +-.-|...|..+|+....+|
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sg 252 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESG 252 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcC
Confidence 4444444 2456778888999999999999999999888877543 55668888998888877665
No 202
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.34 E-value=12 Score=26.52 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHH
Q 047010 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-----RGVTPNVVTLIHLHNVI 96 (153)
Q Consensus 37 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~~~~~~~~~~ 96 (153)
+.++++... -+-|...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+.....+..
T Consensus 174 ~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 174 EHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred HHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Confidence 344444443 235889999999999999999999999999876 46777776665555553
No 203
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=84.26 E-value=23 Score=29.60 Aligned_cols=81 Identities=5% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
..+-.+-.+|-+.|+.++|..++++..+.. +-+..+++-+-... .....--...+.-.+..|...+++..+..+..++
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 566678888888899999999999999877 33333332222211 1122222334555555666666666666666666
Q ss_pred HHC
Q 047010 131 YEH 133 (153)
Q Consensus 131 ~~~ 133 (153)
.+.
T Consensus 196 ~~~ 198 (906)
T PRK14720 196 VHY 198 (906)
T ss_pred Hhc
Confidence 554
No 204
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.24 E-value=17 Score=28.41 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m~~-~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
+..++|-++-. .+..+|.-.+..|=-.|--.|.+++|.+.|+..+.. .|+.. ..||-+=.
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~-----------------~lWNRLGA 472 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDY-----------------LLWNRLGA 472 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchH-----------------HHHHHhhH
Confidence 45555555543 354467777777777778888999999999987653 45433 46666666
Q ss_pred HHHccCcHHHHHHHHHHHHH
Q 047010 113 ALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~ 132 (153)
.++...+-++|...+++..+
T Consensus 473 tLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HhcCCcccHHHHHHHHHHHh
Confidence 66666666666666666654
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=83.73 E-value=13 Score=26.21 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCchHH--HHHHHHHHHHcCCCCc--HhhHHHHHHHHHccCcHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE---RG-VTPNVV--TLIHLHNVIDIGHIPR--TITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~---~~-~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a 123 (153)
..|.-.+..|.+.|++..|-+++..+-+ .. -.++.. .|.-...+....-.+. ...+.-+...+.+.|++++|
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 5578888888888888888888877644 11 123322 2233333333222332 34677888899999999999
Q ss_pred HHHHHHHHHC
Q 047010 124 LLLLFLMYEH 133 (153)
Q Consensus 124 ~~~~~~m~~~ 133 (153)
..+|++....
T Consensus 175 ~~~~e~~~~~ 184 (282)
T PF14938_consen 175 IEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.19 E-value=14 Score=26.31 Aligned_cols=99 Identities=13% Similarity=0.195 Sum_probs=67.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHH--------------HHHHHHHHc--CCCC-cHhhHHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTL--------------IHLHNVIDI--GHIP-RTITFNN 109 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~~~--------------~~~~~~~~~--~~~~-~~~~~~~ 109 (153)
+-|...|-.|=..|.+.|+.+.|..-|..-.+. |-.|+...- .....+++. ...| |+.+-.-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 347899999999999999999999999987653 333433321 122223322 1223 4455555
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
+--++...|++++|...++.|.+.. |..+.+..+|+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 6667889999999999999998854 555556655543
No 207
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.79 E-value=14 Score=25.95 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=82.8
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH----HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNE 76 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~ 76 (153)
|-.+.++++|...+....+ +.+.|..-|... .+.-++++|... +.. .-|+-....|..+|.++-|-..+++
T Consensus 41 fRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~kl---sEvvdl~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 41 FRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSKL---SEVVDLYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 4455667777665555543 234555555555 444455555543 222 3477788889999988888777776
Q ss_pred HHH--cCCCchHHHH--------------------------HHH----------HHHHHcC-------CCCcH-hhHHHH
Q 047010 77 AIE--RGVTPNVVTL--------------------------IHL----------HNVIDIG-------HIPRT-ITFNNV 110 (153)
Q Consensus 77 m~~--~~~~~~~~~~--------------------------~~~----------~~~~~~~-------~~~~~-~~~~~l 110 (153)
.-+ .++.|+.... +++ ....+.+ ..++. ..|-+.
T Consensus 117 Aak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ 196 (308)
T KOG1585|consen 117 AAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAA 196 (308)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHH
Confidence 544 4566776643 000 0011111 11222 235555
Q ss_pred HHHHHccCcHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhhc
Q 047010 111 IQALCGVGKIDKALLLLFLMYEH---GKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 111 i~~~~~~g~~~~a~~~~~~m~~~---~v~p~~~~~~~li~~~~~ 151 (153)
|-.+....++..|...++..-+. .-.-+..+...||.+|-.
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc
Confidence 66666677888888888775432 223355677777777643
No 208
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.63 E-value=2 Score=19.66 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVME 72 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~ 72 (153)
-|...|+.+=..|...|++++|++
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 477899999999999999999863
No 209
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.62 E-value=4.1 Score=20.08 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 110 VIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
+-.+|...|+.+.|..++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5678999999999999999988655
No 210
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=82.02 E-value=22 Score=27.69 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=67.9
Q ss_pred cCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCchHH-HH---------------------HHHHHHHH
Q 047010 45 DGLKPDVYTYTAVMDGFCKVG-----RSNEVMELLNEAIERGVTPNVV-TL---------------------IHLHNVID 97 (153)
Q Consensus 45 ~g~~~~~~t~~~ll~~~~~~g-----~~~~a~~l~~~m~~~~~~~~~~-~~---------------------~~~~~~~~ 97 (153)
...+.|...|...+.+..... +.+.|.++|++..+. .|+.. .+ ..+.....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344567788999888855433 366888888887664 34322 11 01111111
Q ss_pred c-----CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 98 I-----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 98 ~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
. ....+...|.++--.....|++++|...+++..+.+ |+...|..+-+.+...|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G 467 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKG 467 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcC
Confidence 1 123344677777666667899999999999998876 68888888777776554
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.28 E-value=16 Score=25.64 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
...|...+..+.+.|++++|...|+...+.- |+.. -....+-.+-..|...|++++|...|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~--------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDST--------------YQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCc--------------chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567777777788899999999999998752 2211 00124556777888899999999999988
Q ss_pred HH
Q 047010 131 YE 132 (153)
Q Consensus 131 ~~ 132 (153)
.+
T Consensus 207 v~ 208 (263)
T PRK10803 207 VK 208 (263)
T ss_pred HH
Confidence 65
No 212
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.12 E-value=22 Score=27.05 Aligned_cols=124 Identities=9% Similarity=0.101 Sum_probs=65.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~ 67 (153)
+...|+.++|...|+..+- .|+.+...+ ....+..+++... ......|-.-........++
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred hhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhH
Confidence 5567888888888887664 334444333 2222222332220 11222333333334445566
Q ss_pred HHHHHHHHHHHHcCCC-chHHHH-------------HHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 68 NEVMELLNEAIERGVT-PNVVTL-------------IHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~-~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
+.|+.+-.+-.+..-. .....+ .++..-......| +...|.-++..|...|.+++|..+-+.-
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 6666665554432211 000111 1222222334444 6789999999999999999988766543
No 213
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.06 E-value=25 Score=27.77 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCchHHHH---------------HHHHHHHH--cCCCCcHh
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLN--------EAIERGVTPNVVTL---------------IHLHNVID--IGHIPRTI 105 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~--------~m~~~~~~~~~~~~---------------~~~~~~~~--~~~~~~~~ 105 (153)
..+-=.++.--...|+++.|.+++. ...+.+..|-.+.. .++..... ....+...
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 4556667777888999999999999 66667777776655 11111110 01111112
Q ss_pred ----hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 106 ----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 106 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
++--...--.+.|+-++|..+++++.+.+ .++..+..-++.+|++-
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 23333333347799999999999998754 57888888999888763
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.72 E-value=3.9 Score=18.11 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.+|..+=..|...|++++|.+.|++-.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567777889999999999999998765
No 215
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=80.07 E-value=8.4 Score=25.90 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH-cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
-+++-.|-+.-+|.++.++++.|.+..+..+.- .-+.. ....+--...|....-|.++|.+|.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L-----KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL-----KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-----cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 467888999999999999999998866544321 11111 11233445788889999999999999999984
No 216
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.05 E-value=3.7 Score=21.81 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=20.9
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 108 NNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
-.+|.++...|++++|.++++.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3678999999999999999998854
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=79.90 E-value=13 Score=23.58 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=47.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-CCCCH
Q 047010 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-KIPSR 139 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-v~p~~ 139 (153)
..+.|++++|.+.|+.+..+ .+.... ..-+---++.+|-+.+++++|...+++..+.. -.| .
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~y---------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEY---------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-N 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-C
Confidence 45779999999999998664 111111 12355578889999999999999998887643 233 2
Q ss_pred HHHHHHHHHh
Q 047010 140 TLYDTLIKKL 149 (153)
Q Consensus 140 ~~~~~li~~~ 149 (153)
..|...+.++
T Consensus 83 vdYa~Y~~gL 92 (142)
T PF13512_consen 83 VDYAYYMRGL 92 (142)
T ss_pred ccHHHHHHHH
Confidence 4444444443
No 218
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.66 E-value=18 Score=25.05 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|-+..++.+.+.+.+.+|+.+.+.-++. +|+ |.-.-..++.-+|-.|+|++|..=++....
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPt-----------------da~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPT-----------------DAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCc-----------------cccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3455677888889999999988887665 232 333566789999999999999988877753
Q ss_pred --CCCCCCHHHHHHHHHH
Q 047010 133 --HGKIPSRTLYDTLIKK 148 (153)
Q Consensus 133 --~~v~p~~~~~~~li~~ 148 (153)
.+..+-..+|..+|.+
T Consensus 64 l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 64 LSPQDTVGASLYRHLIRC 81 (273)
T ss_pred cCcccchHHHHHHHHHHH
Confidence 3556677888888865
No 219
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.42 E-value=23 Score=26.36 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=16.6
Q ss_pred cHhhHHHHHH-HHHccCcHHHHHHHHHHH
Q 047010 103 RTITFNNVIQ-ALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 103 ~~~~~~~li~-~~~~~g~~~~a~~~~~~m 130 (153)
|.++|.+++. +|.+++++..|.+++-.+
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 4456655543 555666776666666554
No 220
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.42 E-value=13 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 47 ~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
..|+..+|..++..+...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 469999999999999999999999999999865
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=79.40 E-value=16 Score=24.36 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 59 DGFCKVGRSNEVMELLNEAIERG-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 59 ~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
..+.+.|++++|.+.|+.+...- ..|-. ....-.+..++-+.|+++.|...+++..+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a-----------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYA-----------------PQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTH-----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567899999999999998752 11211 12445667788889999999999988765
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.26 E-value=27 Score=27.06 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
.-+-.+.-+.|+.++|.+.|++|.+..-..| +..+-..+|+++.-.+.+.++..++.+=
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~-----------------~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLD-----------------NLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccc-----------------hhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3456667788999999999999976431111 1225556677777777777777776664
No 223
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=78.70 E-value=12 Score=22.79 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=29.5
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
++|+-..+|...++|+++.+-|.++| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 56788889999999999999999887 34444444444433
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.67 E-value=11 Score=30.97 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=70.2
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~ 76 (153)
.+.|++++|..-|-+-... ++|+.+.---+ .-..+++.+.+.|.. +...-..||++|.+.++.++-.+..+.
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 3557777776655443332 34544433333 333455666677653 445567899999999999998888877
Q ss_pred HHHcC-CCchHHHH-H------HHHHHH--HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 77 AIERG-VTPNVVTL-I------HLHNVI--DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 77 m~~~~-~~~~~~~~-~------~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
-- .| ...|..+- . .+.++. ......+......+++ ..+++++|++++..|.
T Consensus 457 ~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 457 CD-KGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred CC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 65 33 33344432 1 111111 2222234444555544 3567888888887664
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.84 E-value=23 Score=25.31 Aligned_cols=73 Identities=5% Similarity=-0.082 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.++++.+....|.+.-..+++++..+. ..+.+......+.+.-.+.||.+.|..+|++..+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~------------------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY------------------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh------------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345555555555555555555555553 33345557778888888899999999999876543
Q ss_pred CCCCCHHHHHH
Q 047010 134 GKIPSRTLYDT 144 (153)
Q Consensus 134 ~v~p~~~~~~~ 144 (153)
.=..|..++..
T Consensus 242 ~~kL~~~q~~~ 252 (366)
T KOG2796|consen 242 TQKLDGLQGKI 252 (366)
T ss_pred HhhhhccchhH
Confidence 32334444433
No 226
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.70 E-value=13 Score=22.29 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=25.1
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
-|..++.-|-..|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 689999999999999999999999876
No 227
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.59 E-value=33 Score=27.00 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=94.9
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
.++|++.+|...|+..++.. +-+...|..| .+..-+++-.+.. +-|....-+|--.|...|.=-+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 46899999999999998874 3344567666 3444444444331 236788888888999999999999
Q ss_pred HHHHHHHHcC-------------------CCchHHHHHHHHHHH-----HcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 72 ELLNEAIERG-------------------VTPNVVTLIHLHNVI-----DIGHIPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 72 ~l~~~m~~~~-------------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
++++.=.+.. -.++...+..+.+.+ ..+-++|..+...|=--|--.|+|++|.+-|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 9998764421 114444554333322 3344577888888888888899999999999
Q ss_pred HHHHHCCCCCC-HHHHHHH
Q 047010 128 FLMYEHGKIPS-RTLYDTL 145 (153)
Q Consensus 128 ~~m~~~~v~p~-~~~~~~l 145 (153)
+.... +.|+ ...|+-|
T Consensus 454 ~~AL~--v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 454 EAALQ--VKPNDYLLWNRL 470 (579)
T ss_pred HHHHh--cCCchHHHHHHh
Confidence 98876 3464 4555544
No 228
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.39 E-value=31 Score=26.67 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=65.8
Q ss_pred HHHHHHHH-HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010 36 YEMLMNVK-NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114 (153)
Q Consensus 36 ~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 114 (153)
.+.+.+.. ..|+..+......+... ..|++..|+.++++....+ ....++..+.++. | ..+...+..++.+.
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--g-~~~~~~~~~l~~si 258 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--G-YHGIEFLTSFIKSL 258 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh--C-CCCHHHHHHHHHHH
Confidence 34444433 34776677666655543 3589999999998865432 1123444455554 2 23777788888888
Q ss_pred HccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010 115 CGVGKIDKALLLLFLMYEHGKIPSRT 140 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m~~~~v~p~~~ 140 (153)
...+....|+.++.+|.+.|..|...
T Consensus 259 ~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 259 IDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 87777789999999999999877543
No 229
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=77.23 E-value=39 Score=27.66 Aligned_cols=101 Identities=21% Similarity=0.152 Sum_probs=64.9
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--Cch--HHHHHHHHHHHH-------cCCCCcHhhHHHHHHHH
Q 047010 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV--TPN--VVTLIHLHNVID-------IGHIPRTITFNNVIQAL 114 (153)
Q Consensus 46 g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~--~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~ 114 (153)
++..+......++... .|+..+++.+++....... ..+ ..+.+.+.+... ..-.++..+..+++...
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksi 269 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSL 269 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH
Confidence 4556667777777654 7999999999998754211 111 123333333322 22235556677777776
Q ss_pred HccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 115 CGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
+.++++.|+..+.+|.+.|..|....=..++-+.
T Consensus 270 -rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~as 303 (725)
T PRK13341 270 -RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAAS 303 (725)
T ss_pred -hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4578999999999999999888665555555443
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=77.13 E-value=24 Score=25.22 Aligned_cols=78 Identities=10% Similarity=-0.020 Sum_probs=56.7
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~ 67 (153)
|.+.|++..|..-|....+-. .+|+..+..+ ++..++++..... +-|..+-.-+-..+...|++
T Consensus 166 ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 166 YMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred HHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccH
Confidence 556788899999998887741 2333333322 7778888877652 23556667777789999999
Q ss_pred HHHHHHHHHHHHcC
Q 047010 68 NEVMELLNEAIERG 81 (153)
Q Consensus 68 ~~a~~l~~~m~~~~ 81 (153)
.+|...|+.|.+..
T Consensus 244 ~~A~~~Wq~lL~~l 257 (287)
T COG4235 244 AEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998865
No 231
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.73 E-value=36 Score=27.02 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH----------HHHHHHHHcCCCCcHhhHHHHHHH---HHccCcH
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVIDIGHIPRTITFNNVIQA---LCGVGKI 120 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~ 120 (153)
-.-=-..+-+.|++++|+++|+.+.+++.. |...- .........-......+|..+-+. +...|++
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 333345678899999999999999877643 33222 011111222222224455555553 3368899
Q ss_pred HHHHHHHHHH
Q 047010 121 DKALLLLFLM 130 (153)
Q Consensus 121 ~~a~~~~~~m 130 (153)
.+|.+++...
T Consensus 192 ~qA~elL~kA 201 (652)
T KOG2376|consen 192 NQAIELLEKA 201 (652)
T ss_pred HHHHHHHHHH
Confidence 9999999877
No 232
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.64 E-value=5.4 Score=17.50 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.|..+=..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566677899999999999999998763
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=76.28 E-value=18 Score=23.49 Aligned_cols=60 Identities=13% Similarity=-0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|-.|-.+|-..+++++|.+.|......+. - |.+.+=-.-.++...|+.+.|...|....+
T Consensus 74 ~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~------------------dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 74 TMGLAAVCQLKKQFQKACDLYAVAFTLLK-N------------------DYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc-C------------------CCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44444445555666666666665443321 0 111222234455566666666666665554
No 234
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=76.09 E-value=17 Score=22.98 Aligned_cols=64 Identities=17% Similarity=0.022 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~ 150 (153)
.++.+.++++|++++.. =..++..+...+++-.|.++++.+++.+...+..|---.++.+.
T Consensus 6 ~~~~~~lk~~glr~T~q-------------------R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 6 EDAIERLKEAGLRLTPQ-------------------RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHHHHcCCCcCHH-------------------HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 34555666777766533 23566666667666778888888877665555666555556555
Q ss_pred cCC
Q 047010 151 QQP 153 (153)
Q Consensus 151 ~~g 153 (153)
..|
T Consensus 67 e~G 69 (145)
T COG0735 67 EAG 69 (145)
T ss_pred HCC
Confidence 544
No 235
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=75.94 E-value=8.1 Score=23.04 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=25.2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
++..+...+..-.|.++++.+++.+..++..|-.-.++.+.+.|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444555566667777766665556666555555555544
No 236
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.85 E-value=3.2 Score=25.94 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=26.5
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
....-|.-..|..+|+.|.+.|=.|| .|+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 33445666788999999999998886 577777654
No 237
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.46 E-value=7.4 Score=24.06 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHc
Q 047010 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG 116 (153)
Q Consensus 37 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 116 (153)
.+++.+...+...+...++.++..|++.+..++..++++. ..+..++.. +....+ ...|...+-.|.+
T Consensus 28 ~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~--~~~yd~~~~----~~~c~~------~~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 28 EYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT--SNNYDLDKA----LRLCEK------HGLYEEAVYLYSK 95 (143)
T ss_dssp CCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS--SSSS-CTHH----HHHHHT------TTSHHHHHHHHHC
T ss_pred HHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc--ccccCHHHH----HHHHHh------cchHHHHHHHHHH
Confidence 4455566665567789999999999999888888888872 112222211 111111 1245555557777
Q ss_pred cCcHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHhhcC
Q 047010 117 VGKIDKALLLLFLMYEH-------GKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 117 ~g~~~~a~~~~~~m~~~-------~v~p~~~~~~~li~~~~~~ 152 (153)
.|++++|..+...+... .-.++...|..+++.|..+
T Consensus 96 ~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~ 138 (143)
T PF00637_consen 96 LGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDS 138 (143)
T ss_dssp CTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTS
T ss_pred cccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 77777777753333211 1134578888888877654
No 238
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.07 E-value=13 Score=21.03 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCc-cH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKP-DV-YTYTAVMDGFCKVGRSNEVMELLN 75 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~-~~-~t~~~ll~~~~~~g~~~~a~~l~~ 75 (153)
.|+..+....+.-..+ +. .+...++.+|+..|.++++++.-.
T Consensus 24 ~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 24 QALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665554333 32 678999999999999999887643
No 239
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.05 E-value=20 Score=23.23 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 52 YTYTAVMD---GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 52 ~t~~~ll~---~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
...+.||+ .-.+.++.+.++.+++-++.. .|.. |...++..++. .+.|+|.+|.++|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~---------------~e~~~~~~~l~--i~r~~w~dA~rlLr 68 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEF---------------PELDLFDGWLH--IVRGDWDDALRLLR 68 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCc---------------hHHHHHHHHHH--HHhCCHHHHHHHHH
Confidence 33444444 345677999999999998764 3322 22345555554 46889999999999
Q ss_pred HHHHCC
Q 047010 129 LMYEHG 134 (153)
Q Consensus 129 ~m~~~~ 134 (153)
++.+..
T Consensus 69 ~l~~~~ 74 (160)
T PF09613_consen 69 ELEERA 74 (160)
T ss_pred HHhccC
Confidence 987653
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=74.87 E-value=36 Score=26.14 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMD-GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~-~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+.+++..+.+. -|+..-|...-. .+...|++++|.+.|++.......... -.....|.-...
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q--------------l~~l~~~El~w~- 314 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ--------------LHHLCYFELAWC- 314 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh--------------HHHHHHHHHHHH-
Confidence 44444444443 355555544332 245567777777777765432111000 012234444443
Q ss_pred HHccCcHHHHHHHHHHHHHCC
Q 047010 114 LCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~ 134 (153)
+.-..+|++|.+.|..+.+.+
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHchHHHHHHHHHHHHhcc
Confidence 455779999999999997743
No 241
>PRK04841 transcriptional regulator MalT; Provisional
Probab=74.20 E-value=49 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=20.7
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.+..+...+...|+++.|.+.+.....
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566677789999999998887743
No 242
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.95 E-value=21 Score=22.93 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=44.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHH
Q 047010 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141 (153)
Q Consensus 62 ~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~ 141 (153)
...+++++++.+++.|... .|.. |...++...+. .+.|+|++|.++|++..+.+.. ..
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~---------------~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~~~---~p 78 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNL---------------KELDMFDGWLL--IARGNYDEAARILRELLSSAGA---PP 78 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCc---------------cccchhHHHHH--HHcCCHHHHHHHHHhhhccCCC---ch
Confidence 3478999999999998653 3331 23446666664 4688999999999999876532 24
Q ss_pred HHHHHHHhh
Q 047010 142 YDTLIKKLD 150 (153)
Q Consensus 142 ~~~li~~~~ 150 (153)
|..-+.++|
T Consensus 79 ~~kAL~A~C 87 (153)
T TIGR02561 79 YGKALLALC 87 (153)
T ss_pred HHHHHHHHH
Confidence 444444444
No 243
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=73.01 E-value=23 Score=23.03 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=40.7
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCC
Q 047010 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHI 101 (153)
Q Consensus 41 ~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~ 101 (153)
.++..|.+.+..-- ++++.....+..-.|.++++.+.+.+..++.. +|+.+..+.+.|+.
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 35566766554433 55555555666778999999999888655555 46888888877753
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=72.48 E-value=16 Score=22.44 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
...++.....+.+. ....+..+..+...+. .+....|.+|..|++.+ .......++. .++......+++.
T Consensus 9 ~~~~vv~~~~~~~~--~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 9 DVSEVVELFEKRNL--LEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred CHHHHHHHHHhCCc--HHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 34445555544432 2333455555555553 56678888888888764 3444444442 1233334445555
Q ss_pred hhcC
Q 047010 149 LDQQ 152 (153)
Q Consensus 149 ~~~~ 152 (153)
|.+.
T Consensus 79 c~~~ 82 (140)
T smart00299 79 CEKA 82 (140)
T ss_pred HHHc
Confidence 5443
No 245
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=72.11 E-value=32 Score=24.26 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
..+.-+...+.+.|++++|.++|++........+.. +.+.. .|-..+-.+...||+-.|.+.|++.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-------------KYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-------------GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556778888999999999999999987754321100 01121 2333344556688999999999988
Q ss_pred HHC--CCCCC--HHHHHHHHHHhhc
Q 047010 131 YEH--GKIPS--RTLYDTLIKKLDQ 151 (153)
Q Consensus 131 ~~~--~v~p~--~~~~~~li~~~~~ 151 (153)
.+. ++..+ ......||++|-.
T Consensus 223 ~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 223 CSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp GTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 643 44333 4556667777643
No 246
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.81 E-value=46 Score=25.99 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=57.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 83 (153)
..||++.|...|-+...-. ++|.+-|+.=..+|...|++++|++=-.+-++ +.
T Consensus 14 s~~d~~~ai~~~t~ai~l~-------------------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~ 66 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS-------------------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LN 66 (539)
T ss_pred ccccHHHHHHHHHHHHccC-------------------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cC
Confidence 4566666666666655431 24666677777777777777777654444333 34
Q ss_pred chHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 84 PNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
|+.. ..|+-.-.++...|++++|...|.+=.+.. .-|...++.+.++
T Consensus 67 p~w~-----------------kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a 113 (539)
T KOG0548|consen 67 PDWA-----------------KGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQA 113 (539)
T ss_pred Cchh-----------------hHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHh
Confidence 4433 356666666667777777777776554432 2234444444443
No 247
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.81 E-value=40 Score=27.48 Aligned_cols=74 Identities=16% Similarity=0.081 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH------HHHHHHH
Q 047010 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK------ALLLLFL 129 (153)
Q Consensus 56 ~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------a~~~~~~ 129 (153)
+++.+|...|++..+.++++.....+-- -+.-...||--|..+.+.|.++. |.++++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~----------------~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~ 96 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG----------------DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ 96 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC----------------CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 8999999999999999999988764310 01112256777777777776642 2222222
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q 047010 130 MYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~ 148 (153)
.-+.-|.-||..|+.+
T Consensus 97 ---a~ln~d~~t~all~~~ 112 (1117)
T COG5108 97 ---ARLNGDSLTYALLCQA 112 (1117)
T ss_pred ---hhcCCcchHHHHHHHh
Confidence 2355567777776654
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=70.74 E-value=42 Score=25.07 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCCccHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 37 EMLMNVKNDGLKPDVYTYTA---VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 37 ~~~~~m~~~g~~~~~~t~~~---ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+.+.+|++.--.|+..+-.+ ++-+|....+++...++.+.|.......-.. ...+=--..-+
T Consensus 124 ~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~---------------~~~i~~~yafA 188 (374)
T PF13281_consen 124 KELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVAN---------------QHNIKFQYAFA 188 (374)
T ss_pred HHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhc---------------chHHHHHHHHH
Confidence 34444554433444444333 3336888999999999999997742111000 00011111223
Q ss_pred HHc---cCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 114 LCG---VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 114 ~~~---~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
+-+ .|+.++|++++.......-.++..||..+=..|
T Consensus 189 LnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 189 LNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 334 889999999998866656667777877665443
No 249
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.68 E-value=49 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=25.8
Q ss_pred cHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 103 RTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
-...||-.-..+...++|+.|.+.++...+
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 345888899999999999999999998764
No 250
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=70.56 E-value=57 Score=26.62 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=61.2
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH
Q 047010 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122 (153)
Q Consensus 43 ~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (153)
...|+..+......+++.. .|++..++.++++....|. ...+.+.+..+... .+......+++++.. ++...
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V~~lLG~---~d~~~If~LldAL~~-~d~~~ 263 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDVRQMIGA---VDKQYLYELLTGIIN-QDGAA 263 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHcc---cCHHHHHHHHHHHHc-CCHHH
Confidence 3457777777777777665 5899999999988776541 12233444444422 234456677888765 78999
Q ss_pred HHHHHHHHHHCCCCCC
Q 047010 123 ALLLLFLMYEHGKIPS 138 (153)
Q Consensus 123 a~~~~~~m~~~~v~p~ 138 (153)
++.+++++.+.|+.+.
T Consensus 264 al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 264 LLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHhCCCHH
Confidence 9999999999887664
No 251
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.35 E-value=8.4 Score=23.04 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.-|..++..|-..|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4589999999999999999999999977
No 252
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.13 E-value=36 Score=28.12 Aligned_cols=69 Identities=14% Similarity=0.304 Sum_probs=40.3
Q ss_pred ccCChHHHHHHHHHHHHCCCC----CCh-hhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYH----PNV-TTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~----~~~-~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m 77 (153)
+...|++|..+.+.++..... |.+ .+|....-+++..++...+ --++-.|..|++.|.|+.|.++-.+.
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHh
Confidence 445677777777777664321 111 2333334455555554332 12455678888888888888876654
No 253
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=69.98 E-value=7.8 Score=23.36 Aligned_cols=46 Identities=11% Similarity=-0.037 Sum_probs=29.9
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.++++.....+.+-.|.++++.+++.+...+..|.---|+.+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3556666666666677888888887777777776666666666554
No 254
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=69.18 E-value=16 Score=19.69 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=40.4
Q ss_pred CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 100 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
+.|....++-+++.++.-.-.+++...+.+..+.|. .+..+|---++.++|
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 346677899999999999999999999999998885 467777766666655
No 255
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=69.03 E-value=18 Score=20.31 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI 98 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~ 98 (153)
......+++.+.. ++++++...+.++...|++++...-.+...+...
T Consensus 5 ~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 5 PEVIEEILESCLN-GDFKEARKKLYELLVEGYSASDILKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3344455555544 5999999999999999998887655555555554
No 256
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.69 E-value=27 Score=22.08 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=45.3
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCC
Q 047010 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHI 101 (153)
Q Consensus 38 ~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~ 101 (153)
+...++++|.+++.. -..+++...+.++.-.|.++++++.+.+...+.. +|+.+..+.+.|+.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 445566677665442 3567777788877789999999999987666544 46888888877754
No 257
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.51 E-value=1 Score=28.01 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH
Q 047010 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87 (153)
Q Consensus 56 ~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 87 (153)
.+|..+.+.+.++....+++.+...+...+..
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~ 43 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPD 43 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHH
Confidence 35667777788888888888888765444333
No 258
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=68.33 E-value=63 Score=26.22 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=86.4
Q ss_pred cccCChHHHHHHHHHHHHCCCCCC---hhhchHH-----------HHHHHHHHHHHc----------C-------CCccH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPN---VTTYTIL-----------EAYEMLMNVKND----------G-------LKPDV 51 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l-----------~a~~~~~~m~~~----------g-------~~~~~ 51 (153)
-++|+++.|+.+|+...+-..+-- ..+|..- .|+++.++-... | +..+.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 467899999999998877543222 1222211 444444433211 0 01234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH------------HHHHHHHHcCCC----CcH-hhHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IHLHNVIDIGHI----PRT-ITFNNVIQAL 114 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~------------~~~~~~~~~~~~----~~~-~~~~~li~~~ 114 (153)
..|+..++.-=..|-++....+++++....+.....+. .......++|+. |++ ..|++-+.-+
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 55666666666677888899999999887765444433 333445566764 444 3566665554
Q ss_pred Hc---cCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047010 115 CG---VGKIDKALLLLFLMYEHGKIPSRTLYDTL 145 (153)
Q Consensus 115 ~~---~g~~~~a~~~~~~m~~~~v~p~~~~~~~l 145 (153)
.+ ....+.|..+|++..+ |+.|...-+-.|
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyL 590 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYL 590 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Confidence 42 3378999999999988 777765544333
No 259
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.19 E-value=62 Score=27.96 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~ 88 (153)
-|...|.-+++...+.|.+++-.+.+...++...+|...+
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 3667899999999999999999999988888777776554
No 260
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.94 E-value=56 Score=25.49 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=61.4
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHH
Q 047010 42 VKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121 (153)
Q Consensus 42 m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 121 (153)
+.+.|+..+......++... .|++..|..++++....|- ...+...+..+. | .++....-.++++.. .++.+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~~~V~~~l--g-~~~~~~i~~ll~al~-~~d~~ 262 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLIADVKTML--G-TIEPLLLFDILEALA-AKAGD 262 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCHHHHHHHH--C-CCCHHHHHHHHHHHH-cCCHH
Confidence 34457777766666666554 5899999999988766541 223333444443 2 344455566777776 48899
Q ss_pred HHHHHHHHHHHCCCCCCHHH
Q 047010 122 KALLLLFLMYEHGKIPSRTL 141 (153)
Q Consensus 122 ~a~~~~~~m~~~~v~p~~~~ 141 (153)
.++.++++|.+.|..|....
T Consensus 263 ~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 263 RLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred HHHHHHHHHHHcCCCHHHHH
Confidence 99999999999998875433
No 261
>PRK15331 chaperone protein SicA; Provisional
Probab=67.84 E-value=31 Score=22.48 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=40.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
+-+.|++++|+.+|+-+...+. -|..-|..|-.++-..+++++|...+...-.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-------------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-------------------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998876431 1223567777788888999999999987643
No 262
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=67.54 E-value=18 Score=21.74 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCC
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGH 100 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~ 100 (153)
-..+++.....+..-.|.++++.+.+.+...+.. +|+.+..+.+.|.
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3567777777777888999999999888777666 5688888877775
No 263
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=67.16 E-value=31 Score=22.26 Aligned_cols=64 Identities=6% Similarity=-0.171 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
...-.+-.-+...|++++|.++|+.+..-. |. +..-|-.+-.++-..|++.+|...+....
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~-----------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AW-----------------SFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334445555778999999999999987643 22 23467778888888999999999999887
Q ss_pred HCC
Q 047010 132 EHG 134 (153)
Q Consensus 132 ~~~ 134 (153)
..+
T Consensus 97 ~L~ 99 (157)
T PRK15363 97 QIK 99 (157)
T ss_pred hcC
Confidence 654
No 264
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.00 E-value=42 Score=23.75 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=52.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchH-H----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTI-L----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l 73 (153)
.|++++|.++++.+.+.+ +-|.+++.. + ++.+-+.+..+. +.-|...|--+-+.|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 467888888888888765 333344421 1 444444444433 356899999999999999999999999
Q ss_pred HHHHHHc
Q 047010 74 LNEAIER 80 (153)
Q Consensus 74 ~~~m~~~ 80 (153)
++++.-.
T Consensus 177 lEE~ll~ 183 (289)
T KOG3060|consen 177 LEELLLI 183 (289)
T ss_pred HHHHHHc
Confidence 9998764
No 265
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.64 E-value=34 Score=22.51 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=30.6
Q ss_pred CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 99 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
...|+..+|..++..+...|+.++|.++..++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4568888999999999999999999999999876
No 266
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.48 E-value=15 Score=20.87 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010 56 AVMDGFCKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 56 ~ll~~~~~~g~~~~a~~l~~~m~~~~~ 82 (153)
++++-+.++.-.++|+++++.|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 467778889999999999999999983
No 267
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=66.40 E-value=25 Score=20.90 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCC
Q 047010 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGH 100 (153)
Q Consensus 56 ~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~ 100 (153)
.+++.....+..-.|.++++.+.+.+..++.. +|+.+..+.+.|.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 45666666666777999999998887554444 5688888887775
No 268
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=66.33 E-value=34 Score=22.35 Aligned_cols=119 Identities=9% Similarity=0.056 Sum_probs=65.3
Q ss_pred HHHHHHHHHCCCCCChhhchHH-------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCC
Q 047010 12 RKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG--RSNEVMELLNEAIERGV 82 (153)
Q Consensus 12 ~~~~~~m~~~~~~~~~~~~~~l-------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g--~~~~a~~l~~~m~~~~~ 82 (153)
.+..+.+.+.+++|+...+..+ +-...+.++.+.++-+|+..-...+-.+.... -..-|++++.++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--- 90 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--- 90 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh---
Confidence 4556677778999998888766 33555666666666666666555554443321 12334444443331
Q ss_pred CchHHHH---------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 83 TPNVVTL---------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 83 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
..+..+- +.++-.... ...+......++++..+.+|...-..+|+-..+++
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~-~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY-HKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc-CCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1222210 222222221 12333455678888888888777666666665543
No 269
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.24 E-value=22 Score=20.22 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.0
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
++++-+.++..-++|+++++-|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56778889999999999999998887
No 270
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.93 E-value=8.9 Score=15.52 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.|..+-..+...|+++.|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 566777888999999999999988764
No 271
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.81 E-value=55 Score=24.61 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
-...+..+.-+|.+.+++..|.+.-.+-+..+ | +|+...=---.++...|+++.|...|+.
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~-----------------~N~KALyRrG~A~l~~~e~~~A~~df~k 316 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELD--P-----------------NNVKALYRRGQALLALGEYDLARDDFQK 316 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--C-----------------CchhHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34567888889999999999999888876653 2 1222322334567778888888888888
Q ss_pred HHHCCCCCCHHHHHHHHH
Q 047010 130 MYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~ 147 (153)
+.+. .|+...-..=|.
T Consensus 317 a~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 317 ALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHh--CCCcHHHHHHHH
Confidence 8763 465544444333
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=65.30 E-value=17 Score=23.85 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
..+..+..-|++.|+.+.|.+.+.++.+....|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~ 70 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPG 70 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH
Confidence 3788999999999999999999999988765553
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=65.13 E-value=56 Score=24.43 Aligned_cols=128 Identities=11% Similarity=0.046 Sum_probs=71.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHc
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS----NEVMELLNEAIER 80 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~----~~a~~l~~~m~~~ 80 (153)
.|+.++|+.++..+....-.+++.+|..+. +++.++....-.-|..+...-|..|.+.-.. -.+..+.--+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~G--RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLG--RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHH--HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 799999999999977766678888887762 2333333322222444444444444442221 2222222233333
Q ss_pred CCCchHH--HHH---HH-HHHHHcC---CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 81 GVTPNVV--TLI---HL-HNVIDIG---HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 81 ~~~~~~~--~~~---~~-~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
|-..... .-. .+ ....+.| ...|-=-+.+++.++.-.|+.++|.+..+.|....
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3211111 000 01 1111222 23444578899999999999999999999998764
No 274
>PRK11906 transcriptional regulator; Provisional
Probab=64.78 E-value=62 Score=24.87 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHC-CCCCChhhchHH---------------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 047010 8 FFEARKVIDYMFDN-GYHPNVTTYTIL---------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65 (153)
Q Consensus 8 ~~~a~~~~~~m~~~-~~~~~~~~~~~l---------------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g 65 (153)
.++|..+|.+.... .+.|+-..--.+ ++.++.++-.+.+ +-|.+....+=.+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677778777732 345543322211 3444444443332 235555555555556677
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 66 RSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
+.+.|..+|++-... .|+.. +...|.+++..+ +|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A---------------~~~~~~~~~~~~--~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIA---------------SLYYYRALVHFH--NEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhc--CCccH---------------HHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Confidence 788888888886553 44433 233455555444 5677777777776433
No 275
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.51 E-value=36 Score=22.09 Aligned_cols=45 Identities=18% Similarity=-0.002 Sum_probs=26.8
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+++..+...++.-.|.++++.+.+.+..++..|-.--|+.+.+.|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444555567777777777666666666555556555544
No 276
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.78 E-value=52 Score=23.62 Aligned_cols=90 Identities=7% Similarity=0.046 Sum_probs=61.1
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH
Q 047010 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL 125 (153)
Q Consensus 46 g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 125 (153)
+..++.-+-.++|+.+++.++|.+-++++..-.... +..-|...|..+|..-...|+..-...
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~-----------------~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNS-----------------VPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccC-----------------CCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 345566666667777777777776666666543321 123577899999999999999988877
Q ss_pred HHHH-----HHHCCCCCCHHHHHHHHHHhhcC
Q 047010 126 LLFL-----MYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 126 ~~~~-----m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+..+ ++..++..+...-..|-+.|.+.
T Consensus 260 iI~~GhLLwikR~~V~v~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 260 IIDDGHLLWIKRNNVDVTDELRSQLSELFKKV 291 (292)
T ss_pred HhhCCCeEEeeecCCcCCHHHHHHHHHHHHhc
Confidence 7753 23557777777777766666543
No 277
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=63.72 E-value=29 Score=20.72 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHH-cCCCchHHHHH-HHHHHHHcCCCCcHhhH----HHHHHHHHccCcHHHHHHHHHHHH--HCCCCCCH
Q 047010 68 NEVMELLNEAIE-RGVTPNVVTLI-HLHNVIDIGHIPRTITF----NNVIQALCGVGKIDKALLLLFLMY--EHGKIPSR 139 (153)
Q Consensus 68 ~~a~~l~~~m~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~--~~~v~p~~ 139 (153)
++|.+.+.++++ .|+.|.....+ .+..-++.+..|+.... +.-++-+.-.|+++.....+-... ..+..++.
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~~d~~~E~~~~T~~Ge~~~i~~alLkq~~~~~~~~~d~ 84 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIKLDGNVEIDWYTFAGEYGDIYLALLKQRCVADGPELDD 84 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccCCCCCeEEEeeeecCchHHHHHHHHHHHHHccCCCCCH
Confidence 356666666644 46777333332 22222333333332211 112222233478877777665543 56777888
Q ss_pred HHHHHHHHHhhcC
Q 047010 140 TLYDTLIKKLDQQ 152 (153)
Q Consensus 140 ~~~~~li~~~~~~ 152 (153)
..+...+++....
T Consensus 85 e~l~~~~~lHl~r 97 (105)
T TIGR03184 85 ESLAKALNLHVHR 97 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777765543
No 278
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=63.31 E-value=89 Score=26.14 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=52.0
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 44 ~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 123 (153)
+.|+..+......++... .|++..++.+++++... ......++..+..++.. .+......++++.. .++...+
T Consensus 194 ~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~---~~~~~I~~lidAL~-~~D~a~a 266 (824)
T PRK07764 194 QEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGV---TDSALIDEAVDALA-AGDGAAL 266 (824)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcC---CCHHHHHHHHHHHH-cCCHHHH
Confidence 346666666666555544 37888888888887642 22233334444444322 23334446666665 4678888
Q ss_pred HHHHHHHHHCCCCC
Q 047010 124 LLLLFLMYEHGKIP 137 (153)
Q Consensus 124 ~~~~~~m~~~~v~p 137 (153)
+.+++++.+.|..|
T Consensus 267 l~~l~~Li~~G~dp 280 (824)
T PRK07764 267 FGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHHHHcCCCH
Confidence 88888887777654
No 279
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=63.01 E-value=99 Score=26.58 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH-HH----------------HHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-TL----------------IHLHNVI 96 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-~~----------------~~~~~~~ 96 (153)
.|...|+.-++.. ..|...+..+.+.|++..+++.|+.+. +......|-.. .+ ..+....
T Consensus 510 RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~--l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 510 RAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC--LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH--HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 4555555544432 236677899999999999999999982 22211111110 00 1111111
Q ss_pred -HcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 97 -DIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 97 -~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.....| |...|..+.++|..+|.+..|..+|.+....
T Consensus 587 sALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 587 SALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 223334 7789999999999999999999999887653
No 280
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=62.84 E-value=64 Score=24.30 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCC------------CchHHHHHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDV---YTYTAVMDGFCKVGRSNEVMELLNEA----IERGV------------TPNVVTLIHLHNVI 96 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~g~~~~a~~l~~~m----~~~~~------------~~~~~~~~~~~~~~ 96 (153)
..+++.+.+.|+.|+. .+-.+++.++...+..++..+++..- ..... ......+..+.+..
T Consensus 99 ~Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l 178 (391)
T cd07229 99 LGVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDGIDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLL 178 (391)
T ss_pred HHHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccchhhhhhhhhccccccccccccccchHHHHHHHHH
Confidence 4677888999999988 45788888888888778888777631 11100 01112345567777
Q ss_pred HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH----------------HCCCCCCHHHHHHHHHHhhc
Q 047010 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY----------------EHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 97 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------------~~~v~p~~~~~~~li~~~~~ 151 (153)
..|...|...+.-.+..+...-.+++|++--.+.. ..-=.||...|+++.-.|+-
T Consensus 179 ~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~ 249 (391)
T cd07229 179 REGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNAS 249 (391)
T ss_pred cCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCC
Confidence 88989999999999998887778888874332221 11135777888887776653
No 281
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=62.54 E-value=33 Score=20.91 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010 56 AVMDGFCKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 56 ~ll~~~~~~g~~~~a~~l~~~m~~~~~ 82 (153)
++|+-..++.-.++|+++.+.|.++|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 367778899999999999999999984
No 282
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=62.45 E-value=67 Score=24.44 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=75.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHH------------HH-HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EA-YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a-~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
.|+++.|.+-|+.|... |.......- ++ .....+--.. -+.-...+.+.+...|..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK-APQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHH
Confidence 58889999999998863 433322211 11 1111221111 1234477899999999999999999
Q ss_pred HHHHHHHHcC-CCchHHHH------------------HHHHH--HHHcCCCCcHhhHHH-HHHHHHccCcHHHHHHHHHH
Q 047010 72 ELLNEAIERG-VTPNVVTL------------------IHLHN--VIDIGHIPRTITFNN-VIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 72 ~l~~~m~~~~-~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~ 129 (153)
++.+.-+... +.++..-- ...+. .......||.+.-.. --.++.+.|+..++-.+++.
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 9999876654 44444321 01111 112344555544322 23467788888888888888
Q ss_pred HHHCCCCC
Q 047010 130 MYEHGKIP 137 (153)
Q Consensus 130 m~~~~v~p 137 (153)
+=+..-.|
T Consensus 289 aWK~ePHP 296 (531)
T COG3898 289 AWKAEPHP 296 (531)
T ss_pred HHhcCCCh
Confidence 75544333
No 283
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.45 E-value=38 Score=21.57 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCchHH
Q 047010 49 PDVYTYTAVMDGFCKVGR-SNEVMELLNEAIERGVTPNVV 87 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~-~~~a~~l~~~m~~~~~~~~~~ 87 (153)
.+..+|.+++.+.++... ---+..+|+-|++.+.+++..
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~ 116 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPS 116 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHH
Confidence 566789999999988776 556888899998877777666
No 284
>PLN02789 farnesyltranstransferase
Probab=62.29 E-value=58 Score=23.66 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=30.7
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
-|..+|+-.--.+.+.|++++++..+.++.+.++. |...|+
T Consensus 140 kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~ 180 (320)
T PLN02789 140 KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWN 180 (320)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHH
Confidence 35568888888888889999999999999876643 344443
No 285
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=62.26 E-value=28 Score=20.02 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.++|+-....|+..|...|.++++...-+=.++...++++.|-..
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 477777788899999999999999988888899999999988553
No 286
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=61.26 E-value=28 Score=20.51 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 118 (153)
-..+|..|...|+.++|...++++.... .-...+..++....+. -......+..++..+++.+
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~-~~~~vv~~~l~~~le~-~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPS-QHHEVVKVILECALEE-KKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GG-GHHHHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHhcC
Confidence 3456778888899999998888763321 1111222333333333 2334445666666666555
No 287
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.17 E-value=86 Score=25.25 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=59.3
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH
Q 047010 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122 (153)
Q Consensus 43 ~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (153)
.+.|+..+......++.. -.|++..++.++++....|- ...+...+..+.. .++......++++... |+...
T Consensus 197 ~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~--~~It~~~V~~~Lg---~~~~~~i~~LldaL~~-~d~~~ 268 (618)
T PRK14951 197 AAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGS--GQLQEAAVRQMLG---SVDRSHVFRLIDALAQ-GDGRT 268 (618)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHc---CCCHHHHHHHHHHHHc-CCHHH
Confidence 345777777777777663 35899999999887665441 1233344444442 2445556677777764 78999
Q ss_pred HHHHHHHHHHCCCCCC
Q 047010 123 ALLLLFLMYEHGKIPS 138 (153)
Q Consensus 123 a~~~~~~m~~~~v~p~ 138 (153)
++.+++++.+.|..|.
T Consensus 269 al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 269 VVETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 9999999998887664
No 288
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=61.09 E-value=56 Score=23.06 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=33.9
Q ss_pred CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010 99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140 (153)
Q Consensus 99 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~ 140 (153)
.-.|.......++..|. .+++++|.+.|.++-+.|..|...
T Consensus 234 ~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 234 CDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred cCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 34688888889998886 558999999999999999988543
No 289
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=60.54 E-value=47 Score=22.07 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=14.6
Q ss_pred cccCChHHHHHHHHHHHHC
Q 047010 3 CNKNDFFEARKVIDYMFDN 21 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~ 21 (153)
.+.|++.+|...|+.+...
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~ 34 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDR 34 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 3568899999999998875
No 290
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.23 E-value=40 Score=21.13 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
+..+-+.++....+.|+.-.-.+-+.+|.+.+++..|..+|+-.+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444566677778899999999999999999999999999988653
No 291
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=59.94 E-value=47 Score=21.85 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS---NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~---~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
.++-+.|...+..++. ..-+|.-|...|-. +-|....+.....|-.|- .+...+...| .+..+....+.
T Consensus 38 ~ELr~kL~k~~~~~~~--Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g~G~~----rl~qeL~qkG--i~~~~Ie~aL~ 109 (174)
T COG2137 38 KELRRKLAKKEFSEEI--IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKGKGPA----RLKQELKQKG--IDDEIIEEALE 109 (174)
T ss_pred HHHHHHHHhccCCHHH--HHHHHHHHHHcCcccHHHHHHHHHHHHHhcccChH----HHHHHHHHcC--CCHHHHHHHHh
Confidence 4455556666654444 55666666665533 335555555555542221 2344444555 23334455555
Q ss_pred HHHccCcHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHh
Q 047010 113 ALCGVGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m-~~~~v~p~~~~~~~li~~~ 149 (153)
.++.......|..++..- +..+..|+..-..-+...+
T Consensus 110 ~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L 147 (174)
T COG2137 110 LIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFL 147 (174)
T ss_pred ccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHH
Confidence 555555555555555443 2333445533333333333
No 292
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=59.91 E-value=55 Score=22.63 Aligned_cols=61 Identities=11% Similarity=-0.046 Sum_probs=37.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.-..+.+.|++++|.+.|++....- |+... -....-.+..++-+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~--------------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPY--------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344466789999999999887642 22110 0011223456667888888888888877653
No 293
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.44 E-value=84 Score=24.61 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH------------HHHHHHHH--cCCCCcHhhHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------IHLHNVID--IGHIPRTITFNNVIQALC 115 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~li~~~~ 115 (153)
+.--|---+.+=.++.++-.|..+++..+..=-..|...| ...+++++ ....|+...|++.|.--.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFEL 185 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3344444455555555666666666655433222222222 12222222 245677778888888777
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 116 GVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 116 ~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
+-..++.|..++++..- +.|+..+|.
T Consensus 186 RykeieraR~IYerfV~--~HP~v~~wi 211 (677)
T KOG1915|consen 186 RYKEIERARSIYERFVL--VHPKVSNWI 211 (677)
T ss_pred HhhHHHHHHHHHHHHhe--ecccHHHHH
Confidence 77777877777776654 346666554
No 294
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.69 E-value=53 Score=22.02 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 34 EAYEMLMNVKNDGLKPDV-------YTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~-------~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
.|+.+++.+.+....|+. ..-...+-.|.+.|.+++|.+++++....+
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~ 141 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDP 141 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCC
Confidence 778888877766444421 223456678999999999999999998743
No 295
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.27 E-value=44 Score=21.02 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCC
Q 047010 40 MNVKNDGLKPDVYTYTAVMDGFCKV-GRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHI 101 (153)
Q Consensus 40 ~~m~~~g~~~~~~t~~~ll~~~~~~-g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~ 101 (153)
+.+.+.|.+++..- ..+++..... +..-.|.++++.+.+.+...+.. +|+.+..+.+.|+.
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44566676655433 3445555543 45778999999999888655554 46888888877764
No 296
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=58.11 E-value=30 Score=19.08 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 047010 34 EAYEMLMNVKNDGLKPDVY---TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~ 85 (153)
.-.++++.+.+.|..++.. .++.+..+ +..|+ .++++.+.+.|..++
T Consensus 37 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~----~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 37 GNLEIVKLLLENGADINSQDKNGNTALHYA-AENGN----LEIVKLLLEHGADVN 86 (89)
T ss_dssp TTHHHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTH----HHHHHHHHHTTT-TT
T ss_pred CCHHHHHHHHHhcccccccCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCCCC
Confidence 4467777777787777664 45555554 33444 445566666666554
No 297
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=57.98 E-value=1e+02 Score=24.99 Aligned_cols=38 Identities=24% Similarity=0.440 Sum_probs=28.0
Q ss_pred CccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH
Q 047010 48 KPDVY--TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87 (153)
Q Consensus 48 ~~~~~--t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 87 (153)
+|... ++-.+..-|-+.|+++.|+.+++.-..+ .|+..
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 45554 4556788899999999999999986654 55544
No 298
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=57.79 E-value=29 Score=21.34 Aligned_cols=40 Identities=15% Similarity=0.347 Sum_probs=29.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKN 44 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~ 44 (153)
.|+..+|.++++.++..|..|-...|..-.=+..+-+++.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~L~rElr~L~~l~~ 49 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWALQRELRLLIQLKQ 49 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999998888887755555555554
No 299
>COG5210 GTPase-activating protein [General function prediction only]
Probab=57.64 E-value=88 Score=24.25 Aligned_cols=131 Identities=9% Similarity=0.060 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010 9 FEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 9 ~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l 73 (153)
++|...+..+.+....|.....+.- ..-+++..+...|+.....++.-++..+.+....+.+..+
T Consensus 320 e~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lri 399 (496)
T COG5210 320 EQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRI 399 (496)
T ss_pred HHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHH
Confidence 4566677776663334444433211 4457778889999999999999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHc--CCCCcHhhHHHHHHH--------------HHccCcHHHHHHHHHHHHHCCCCC
Q 047010 74 LNEAIERGVTPNVVTLIHLHNVIDI--GHIPRTITFNNVIQA--------------LCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 74 ~~~m~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~--------------~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
++.+.-.|...-...+-.+-...+. ....+...+..+..- -.+.+...+.+.......+.++.|
T Consensus 400 wD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~p 479 (496)
T COG5210 400 WDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLKQLFLHSGKEAWSSILKFRHGTDRDILLFIEDLLKKDITP 479 (496)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHHHHhhhhhhhhhhhhhhHHhhhhhhhhHHHHHHhhhhcccCc
Confidence 9999988876655554222222211 112222222222211 233444456666666667778888
Q ss_pred CH
Q 047010 138 SR 139 (153)
Q Consensus 138 ~~ 139 (153)
+.
T Consensus 480 ~~ 481 (496)
T COG5210 480 TR 481 (496)
T ss_pred hh
Confidence 86
No 300
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=57.58 E-value=38 Score=26.14 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=17.3
Q ss_pred HHHHHHcCCCchHHHHHHHHHH
Q 047010 74 LNEAIERGVTPNVVTLIHLHNV 95 (153)
Q Consensus 74 ~~~m~~~~~~~~~~~~~~~~~~ 95 (153)
|+.|+++|.+|...=|+.++++
T Consensus 372 FEtLveaGy~PE~AYfE~lhEl 393 (487)
T PRK05225 372 FETMVDSGIIEESAYYESLHEL 393 (487)
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 8889999999988877555554
No 301
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.19 E-value=93 Score=24.41 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=37.4
Q ss_pred CccccCChHHHHHHHHHHHHCCCCCChhhchHH--HHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--EAYEMLMNVKNDGLKPDV--YTYTAVMDGFCKVGRSNEVMELLNE 76 (153)
Q Consensus 1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~~~g~~~~a~~l~~~ 76 (153)
+|.+.++++.+...|.......-.|+...=..- .++.......- +.|+. ..-.. =+.+.+.|++..|.+-+.+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~k-Gne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAY--INPEKAEEEREK-GNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHH-HHHHHhccCHHHHHHHHHH
Confidence 355667888888888887765544433222111 11111111111 11221 11111 3345566666666666666
Q ss_pred HHHcC
Q 047010 77 AIERG 81 (153)
Q Consensus 77 m~~~~ 81 (153)
+++..
T Consensus 384 AIkr~ 388 (539)
T KOG0548|consen 384 AIKRD 388 (539)
T ss_pred HHhcC
Confidence 66554
No 302
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=57.08 E-value=20 Score=19.19 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCc
Q 047010 64 VGRSNEVMELLNEAIERGVTP 84 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~ 84 (153)
.-+++.|...|.++...|-.|
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP 58 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIP 58 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCC
Confidence 458999999999999876444
No 303
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=56.45 E-value=33 Score=21.13 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 047010 64 VGRSNEVMELLNEAIERGVTPNVVTLIHL 92 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~~~~~~~~~ 92 (153)
.|+.+.|..+++.+...|+.|....+.+.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~L~ 38 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWALQ 38 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence 57888899999999999988888877333
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=56.10 E-value=61 Score=21.95 Aligned_cols=76 Identities=11% Similarity=0.093 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|++.|-++...+.--+....-+|-.-|. ..+.+++..++....+.. ..+-.+|...+.+|.+.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~---------------~~~~~~n~eil~sLas~ 187 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS---------------NPDDNFNPEILKSLASI 187 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc---------------CCCCCCCHHHHHHHHHH
Confidence 55555555555544434444444444343 446666666666554422 12235677899999999
Q ss_pred HHccCcHHHHHH
Q 047010 114 LCGVGKIDKALL 125 (153)
Q Consensus 114 ~~~~g~~~~a~~ 125 (153)
|-+.|+++.|.-
T Consensus 188 ~~~~~~~e~AYi 199 (203)
T PF11207_consen 188 YQKLKNYEQAYI 199 (203)
T ss_pred HHHhcchhhhhh
Confidence 999999998863
No 305
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.33 E-value=55 Score=26.85 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHHHHHccCcHHHHHHHH
Q 047010 109 NVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~ 127 (153)
-.+.+|.+.|++.+|.++-
T Consensus 775 ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 775 EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHHhccHHHHHHHH
Confidence 5678888888888887653
No 306
>PLN03025 replication factor C subunit; Provisional
Probab=55.31 E-value=76 Score=22.83 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=60.7
Q ss_pred HHHHHHH-HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010 36 YEMLMNV-KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114 (153)
Q Consensus 36 ~~~~~~m-~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 114 (153)
...+.+. .+.|+..+......++..+ .|+...+...++......-..+.. .+..+ ...+.......++++.
T Consensus 164 ~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~---~v~~~---~~~~~~~~i~~~i~~~ 235 (319)
T PLN03025 164 LGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQE---NVFKV---CDQPHPLHVKNIVRNC 235 (319)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHH---HHHHH---cCCCCHHHHHHHHHHH
Confidence 3334333 3457777777777777654 478999988888554321122211 11111 1234445666777776
Q ss_pred HccCcHHHHHHHHHHHHHCCCCCCHHH
Q 047010 115 CGVGKIDKALLLLFLMYEHGKIPSRTL 141 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m~~~~v~p~~~~ 141 (153)
. .++++.|+..+.+|.+.|+.|....
T Consensus 236 ~-~~~~~~a~~~l~~ll~~g~~~~~Il 261 (319)
T PLN03025 236 L-KGKFDDACDGLKQLYDLGYSPTDII 261 (319)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 5 5789999999999999998886443
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=54.13 E-value=42 Score=28.16 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=28.7
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
|-...|.-+|..++...++..|.+.+.+|..+-
T Consensus 1328 r~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1328 RCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 334689999999999999999999999997653
No 308
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=53.37 E-value=34 Score=18.17 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=31.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH-----HccCcHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL-----CGVGKIDKALLLL 127 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~ 127 (153)
+...|++-+|.++++.+-...-.+... .|..+|... .+.|+.+.|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~------------------~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERD------------------FLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHH------------------HHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHH------------------HHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 456889999999999987643333322 555555543 3678888887764
No 309
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=52.44 E-value=1.1e+02 Score=23.79 Aligned_cols=138 Identities=13% Similarity=0.130 Sum_probs=79.1
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhch-HH---------------HHHHHHHHHHHcCCCccHHHHHHHHHH--HHhcC
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYT-IL---------------EAYEMLMNVKNDGLKPDVYTYTAVMDG--FCKVG 65 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l---------------~a~~~~~~m~~~g~~~~~~t~~~ll~~--~~~~g 65 (153)
+.+++.+|.++|....++- .-+++.+. .+ .....+..+.+. .| ...|-.+..+ +-+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 4578889999999887752 22223222 11 111222223322 12 3345555554 45678
Q ss_pred CHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC----CCCCH
Q 047010 66 RSNEVMELLNEAIER--GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG----KIPSR 139 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----v~p~~ 139 (153)
++.+|.+.+..=..+ +..|..--.++- ..-+|..-=+..++.+...|.+.++..++++|..+= ..-+.
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~------~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQ------QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHH------HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 888888888766544 333221110000 001233445667778889999999999999887543 33688
Q ss_pred HHHHHHHHHhhc
Q 047010 140 TLYDTLIKKLDQ 151 (153)
Q Consensus 140 ~~~~~li~~~~~ 151 (153)
.+|+.++-.++|
T Consensus 168 d~yd~~vlmlsr 179 (549)
T PF07079_consen 168 DMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHhH
Confidence 899987666654
No 310
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=52.04 E-value=82 Score=25.73 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=7.6
Q ss_pred HHccCcHHHHHHHHHH
Q 047010 114 LCGVGKIDKALLLLFL 129 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~ 129 (153)
++-.|++.+|.++|.+
T Consensus 642 ~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 642 FAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHhhhhHHHHHHHHHH
Confidence 3444455555554443
No 311
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=51.85 E-value=60 Score=20.65 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047010 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83 (153)
Q Consensus 37 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 83 (153)
.++.++.. .-+++..-.-.+-.+|.+.|+..++.+++++.=+.|++
T Consensus 107 ki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 107 KIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444443 34678888888999999999999999999998888763
No 312
>PRK12357 glutaminase; Reviewed
Probab=51.74 E-value=94 Score=22.80 Aligned_cols=112 Identities=12% Similarity=0.149 Sum_probs=60.4
Q ss_pred CCCCChhhchHHHHHHHHHHHHHcCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH------
Q 047010 22 GYHPNVTTYTILEAYEMLMNVKNDGLKPDV------YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------ 89 (153)
Q Consensus 22 ~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~------~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~------ 89 (153)
|.+|+-..||++..+++ .+.|.+.|. .+-.++|.+-.....++..++.++++-...+..|..++
T Consensus 97 G~EPSG~~FNSi~~Le~----~~~g~P~NPmINAGAI~~~sll~g~~~~~r~~~il~~~~~lag~~l~~d~~v~~SE~~t 172 (326)
T PRK12357 97 DVEPTGDAFNSIIRLEI----HKPGKPFNPMINAGAITVASLLPGTSVQEKLESLYVLIEKMIGKRPAINEEVFQSEWET 172 (326)
T ss_pred CCCCCCCCcchhhhhhh----cCCCCCCCCcccHHHHHHHHHhccCCchHHHHHHHHHHHHHhCCCCccCHHHHHHHhhh
Confidence 67888888887733332 222444433 33444554433333556666777766655666777766
Q ss_pred -----HHHHHHHHcCCCC-cH-hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010 90 -----IHLHNVIDIGHIP-RT-ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 90 -----~~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
.+...|...|.-. |+ .+......-|+-....++...+.-.+...|+.|
T Consensus 173 ~~rNrAlA~~Lks~g~i~~d~e~~Ld~Yf~qCsi~vt~~dLA~~ga~LAn~Gv~P 227 (326)
T PRK12357 173 AHRNRALAYYLKETGFLESDVEETLEVYLKQCSIEVTTEDIALIGLILAHDGYHP 227 (326)
T ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHhCCCcCC
Confidence 4555566666543 32 234444444554445555555555555555554
No 313
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=51.26 E-value=38 Score=18.19 Aligned_cols=12 Identities=25% Similarity=0.061 Sum_probs=6.1
Q ss_pred HHHHHHHHHHCC
Q 047010 123 ALLLLFLMYEHG 134 (153)
Q Consensus 123 a~~~~~~m~~~~ 134 (153)
..+.++.|.+.|
T Consensus 35 vRrrLr~me~~G 46 (66)
T PF08461_consen 35 VRRRLRAMERDG 46 (66)
T ss_pred HHHHHHHHHHCC
Confidence 334455555555
No 314
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=50.85 E-value=1.4e+02 Score=24.47 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCCccHHHHHHHHHHHHhcCC----HHHHHHHHHHHHH----cCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010 46 GLKPDVYTYTAVMDGFCKVGR----SNEVMELLNEAIE----RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117 (153)
Q Consensus 46 g~~~~~~t~~~ll~~~~~~g~----~~~a~~l~~~m~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 117 (153)
|++.|..-|..|+.++....+ ++++.++++.+++ .|+.+... |+---.++..-|+..
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lH---------------n~cf~WVlF~qyv~t 276 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLH---------------NVCFAWVLFRQYVAT 276 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHH---------------HHHHHHHHHHHHHhc
Confidence 667899999999999877443 4777777777755 36665544 222334667777777
Q ss_pred CcHHHHHHHHHHH
Q 047010 118 GKIDKALLLLFLM 130 (153)
Q Consensus 118 g~~~~a~~~~~~m 130 (153)
|+.+........+
T Consensus 277 ge~~LL~~a~~~L 289 (677)
T PF05664_consen 277 GEPDLLKAAIQQL 289 (677)
T ss_pred CCHHHHHHHHHHH
Confidence 7665544444333
No 315
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=50.83 E-value=1.2e+02 Score=23.80 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~-~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
+|.+.+++|.+.... -+......||+++...+...++..++.+--+
T Consensus 277 EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 277 EAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 889999998765433 3456889999999999999999999999743
No 316
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.11 E-value=60 Score=20.07 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
+.+.++|..|.+.|+-.... .-|...-.-+-..|++.+|..+|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~A-----------------lfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLA-----------------LFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhH-----------------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33677888888888755444 367777777788999999999886
No 317
>PF14162 YozD: YozD-like protein
Probab=49.35 E-value=36 Score=17.37 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCCCCH--------HHHHHHHHHh
Q 047010 121 DKALLLLFLMYEHGKIPSR--------TLYDTLIKKL 149 (153)
Q Consensus 121 ~~a~~~~~~m~~~~v~p~~--------~~~~~li~~~ 149 (153)
+-|.-+|.++.++|..|+. .||..|+.-|
T Consensus 12 EIAefFy~eL~kRGyvP~e~El~eiADItFeYll~K~ 48 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTEEELEEIADITFEYLLEKC 48 (57)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4466677888899999976 4666666554
No 318
>PRK05907 hypothetical protein; Provisional
Probab=48.15 E-value=1e+02 Score=22.30 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=54.8
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120 (153)
Q Consensus 41 ~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 120 (153)
++.+.|...+.....-++..++. ++...+..-++++...-.+....+.+.+..+......-|++ .++++.. .|+.
T Consensus 146 ~~~~~g~~i~~~a~~~L~~~~~~-~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF---~L~dai~-~~~~ 220 (311)
T PRK05907 146 RAKELGISCSLGLASLFVSKFPQ-TGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLW---KLRDALL-RRDR 220 (311)
T ss_pred HHHHcCCCcCHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHH---HHHHHHH-ccCH
Confidence 44555666666665555554421 46666666566654431112222334444444444444443 4556654 7789
Q ss_pred HHHHHHHHHHHHC-CCCCCH
Q 047010 121 DKALLLLFLMYEH-GKIPSR 139 (153)
Q Consensus 121 ~~a~~~~~~m~~~-~v~p~~ 139 (153)
+.|+++++.+... |..|-.
T Consensus 221 ~~Al~il~~Ll~~~ge~p~~ 240 (311)
T PRK05907 221 VEGHSLLRSLLSDMGEDPLG 240 (311)
T ss_pred HHHHHHHHHHHHhcCCChHH
Confidence 9999999999988 888854
No 319
>PF15469 Sec5: Exocyst complex component Sec5
Probab=47.67 E-value=77 Score=20.67 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--hHHHH-HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTP--NVVTL-IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
-.-|.-+.+.|+++.+..-|.+.+..=-.. ...++ .++.++....-..-...|..+.+.- ...++...++..+.
T Consensus 90 P~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~---~s~~~~~~~i~~Ll 166 (182)
T PF15469_consen 90 PSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP---SSQEEFLKLIRKLL 166 (182)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHH
Confidence 345666777888888888877765421111 33333 2222222221111223344444333 45667777777777
Q ss_pred HCCCCCCHHHH
Q 047010 132 EHGKIPSRTLY 142 (153)
Q Consensus 132 ~~~v~p~~~~~ 142 (153)
+.++.+|+.-+
T Consensus 167 ~L~~~~dPi~~ 177 (182)
T PF15469_consen 167 ELNVEEDPIWY 177 (182)
T ss_pred hCCCCCCHHHH
Confidence 77876666543
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=46.64 E-value=90 Score=21.16 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhchHH----------HHHHHHHHHHH---cCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 9 FEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKN---DGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 9 ~~a~~~~~~m~~~~~~~~~~~~~~l----------~a~~~~~~m~~---~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
++|+..|-.+...+.--++...-.| ++..++-+..+ .+-.+|...+.+|.+.|-+.|+.+.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5677777777776654444443333 67777765553 344789999999999999999999874
No 321
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.47 E-value=96 Score=24.64 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=44.3
Q ss_pred HHHHHHHCCCCCChhhchHH---HHHHHHHHHHHcCC-----CccHHHHHH---HHHHHHhcCCHHHHHHHHHHHHH
Q 047010 14 VIDYMFDNGYHPNVTTYTIL---EAYEMLMNVKNDGL-----KPDVYTYTA---VMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 14 ~~~~m~~~~~~~~~~~~~~l---~a~~~~~~m~~~g~-----~~~~~t~~~---ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
+.+.+--.|++|+..||++= ..+.+..+|.+.|- .|...+-.- =+..-+|...+|+-+++|++|.+
T Consensus 255 IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKK 331 (712)
T ss_pred HHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhc
Confidence 45566667899999999876 55566666666553 232222221 23445778889999999999977
No 322
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=1.2e+02 Score=22.50 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERG---VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..++...-+.++.++|++.++++.+.= -.|+.+ ...-..+...+...|+.+++.+.+.+.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av----------------~~~~t~~~r~~L~i~DLk~~kk~ldd~~ 142 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAV----------------IYILTEIARLKLEINDLKEIKKLLDDLK 142 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhH----------------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 445555666678999999999886632 234433 2234556666778899999999999887
Q ss_pred H-----CCCCCCHH
Q 047010 132 E-----HGKIPSRT 140 (153)
Q Consensus 132 ~-----~~v~p~~~ 140 (153)
+ .+|.|+..
T Consensus 143 ~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 143 SMLDSLDGVTSNVH 156 (380)
T ss_pred HHHhcccCCChhhh
Confidence 6 68888543
No 323
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=45.99 E-value=1.1e+02 Score=22.10 Aligned_cols=111 Identities=9% Similarity=0.125 Sum_probs=57.4
Q ss_pred CCCCChhhchHHHHHHHHHHHHHcCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHH-----
Q 047010 22 GYHPNVTTYTILEAYEMLMNVKNDGLKPDV------YTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTL----- 89 (153)
Q Consensus 22 ~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~------~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~~~----- 89 (153)
|.+|+-..||++..++. ..|.+.|. .+-..+|.+-.....++..++.++++... .+..|..++
T Consensus 81 G~ePSG~~FNsi~~Le~-----~~g~P~NPmINAGAI~~~sll~~~~~~~~~~~il~~~~~~ag~~~l~~d~~v~~SE~~ 155 (300)
T TIGR03814 81 GVEPSGDPFNSIVQLEL-----EPGKPRNPFINAGAIAVTSLLPGRTSEEKLERILEFVRKLAGNRSISIDEEVAQSERE 155 (300)
T ss_pred CCCCCCCCccchhhhhc-----cCCCCCCccccHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHh
Confidence 67888888888744433 12444444 23344443322223455566666666544 566777776
Q ss_pred ------HHHHHHHHcCCCC-cH-hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010 90 ------IHLHNVIDIGHIP-RT-ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 90 ------~~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
.+...|...|.-+ |+ .+......-|+-....++.-.+.-.+...|+.|
T Consensus 156 t~~rNrAla~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P 211 (300)
T TIGR03814 156 TGFRNRALAYLLKSFGNLENDVEEVLDVYFKQCSIEMTCKDLARAGLFLANGGVNP 211 (300)
T ss_pred hhHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCC
Confidence 4555566666654 32 233333444444444444444444444555554
No 324
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.98 E-value=1.1e+02 Score=21.76 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 56 AVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 56 ~ll~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
=|-.++...|+.++|-.+|..+.+.- -.|.. ....--+-....+.|+-++|..+|++..+.
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-----------------pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-----------------PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCC-----------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 36778889999999999999887742 11211 125556666777889999999999888653
No 325
>PRK12356 glutaminase; Reviewed
Probab=45.87 E-value=1.2e+02 Score=22.24 Aligned_cols=111 Identities=11% Similarity=0.063 Sum_probs=55.2
Q ss_pred CCCCChhhchHHHHHHHHHHHHHcCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH------
Q 047010 22 GYHPNVTTYTILEAYEMLMNVKNDGLKPDV------YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------ 89 (153)
Q Consensus 22 ~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~------~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~------ 89 (153)
|.+|+-..||++..++. ..|.+.|. .+-.++|.+-.....++..++.++++-...+..|..++
T Consensus 93 G~EPSG~~FNsi~~Le~-----~~g~P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~SE~~t 167 (319)
T PRK12356 93 GADPTGLPFNSVIAIEL-----HGGKPLNPLVNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQSEQTT 167 (319)
T ss_pred CCCCCCCCcchHHHhhc-----cCCCCCCccccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHHHHHhh
Confidence 56788888877722221 22444343 23344444322222345556666666555677777776
Q ss_pred -----HHHHHHHHcCCCC-cH-hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010 90 -----IHLHNVIDIGHIP-RT-ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 90 -----~~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
.+...|...|.-+ |+ .+......-|+-....++.-.+.--+...|+.|
T Consensus 168 ~~RNrAlA~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P 222 (319)
T PRK12356 168 NFHNRAIAWLLYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNP 222 (319)
T ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCC
Confidence 4556666666653 32 233333333443344444444444444555554
No 326
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=45.78 E-value=84 Score=20.52 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=29.6
Q ss_pred HHHHHHHH-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 37 EMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 37 ~~~~~m~~-~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+++..+.+ .|+.+......-++..+++.-.++.+..+++.+...|
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 44555554 6666777777777777777666777777777766555
No 327
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=45.41 E-value=6.6 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHHHHCC-CCCCh
Q 047010 7 DFFEARKVIDYMFDNG-YHPNV 27 (153)
Q Consensus 7 ~~~~a~~~~~~m~~~~-~~~~~ 27 (153)
|++.|...|..+...| ++|+.
T Consensus 28 d~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 28 DYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp -CCHHHHHHHHCCCTT-S-CCC
T ss_pred CHHHHHHHHHHHHHcCCCChHh
Confidence 5678899998888765 55543
No 328
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.65 E-value=1.6e+02 Score=23.09 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=62.0
Q ss_pred HHHHHHHHH-HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNV-KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m-~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
+....+.+. ...|+..+......++... .|++..+..+++++...+-..+ .+.+..+. -.+.....-.+++
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It---~~~V~~~l---~~~~~~~if~Li~ 250 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVT---RKQVEEAL---GLPPQERLRGIAA 250 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCC---HHHHHHHH---CCCcHHHHHHHHH
Confidence 444455443 3458777777776666655 4899999999998766543222 22222322 1233444556677
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 113 ALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
++. .++++.|+.++.++...|..|.
T Consensus 251 al~-~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 251 ALA-QGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 764 5899999999999999887664
No 329
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=43.31 E-value=82 Score=19.70 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=23.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
++.+++-=....|+++.|+++.....++|.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 444555566689999999999999988874
No 330
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.31 E-value=47 Score=16.98 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~ 89 (153)
+--|+.+.|++++|.+..+.+.+. .|+..-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 445789999999999999999875 5665533
No 331
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.24 E-value=1.2e+02 Score=21.53 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG----VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
.-|+.-++.| +.|++.+|...|..-++.. ..|+ .+=.|-..+...|++++|..+|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~n--------------------A~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPN--------------------AYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccch--------------------hHHHHHHHHHhcccchHHHHHH
Confidence 3588888765 5567999999999988753 2222 4445777888888888888888
Q ss_pred HHHHH
Q 047010 128 FLMYE 132 (153)
Q Consensus 128 ~~m~~ 132 (153)
..+.+
T Consensus 202 ~~~~k 206 (262)
T COG1729 202 ARVVK 206 (262)
T ss_pred HHHHH
Confidence 87754
No 332
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=42.81 E-value=23 Score=27.12 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHH----HHHHHHHHcCCCCcHhh----HHHHHHHHHccC-cHHHHHH
Q 047010 64 VGRSNEVMELLNEAIERGVTPNVVTL----IHLHNVIDIGHIPRTIT----FNNVIQALCGVG-KIDKALL 125 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~li~~~~~~g-~~~~a~~ 125 (153)
...+++|+++.++-.+.|.+.+.... +++.++.+.++.||+.| ..-.+.+|+=.| .++++.+
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~ 286 (561)
T COG2987 216 AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADE 286 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHH
Confidence 45788888888888777755443322 77788888888888764 444556666555 4444443
No 333
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.51 E-value=1.1e+02 Score=21.11 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIE----RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
--|-.-|.+.|++++|.++|+.+.. .|-. .+...+...+..++.+.|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~-----------------~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWW-----------------SLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcH-----------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456678999999999999998743 2211 122346667777888888888777765554
No 334
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=42.06 E-value=83 Score=21.68 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010 50 DVYTYTAVMDGFCKVGRS---------NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~---------~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 120 (153)
...-|.++-.+|.+.|-+ +.-.++++..++.|++- .=.+.|+++|+---..-++
T Consensus 162 ~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~k-----------------viPHIYssiIDk~tG~Trp 224 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEK-----------------VIPHVYSSIIDKETGNTRV 224 (236)
T ss_pred cHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCe-----------------eccccceeccccccCCCCH
Confidence 445577777888877643 33444444444444321 2336899999888778899
Q ss_pred HHHHHHHHHHH
Q 047010 121 DKALLLLFLMY 131 (153)
Q Consensus 121 ~~a~~~~~~m~ 131 (153)
++..+++..++
T Consensus 225 edV~~l~~~~k 235 (236)
T TIGR03581 225 EDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHhh
Confidence 99999998775
No 335
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=41.92 E-value=54 Score=23.96 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=28.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHC-CCCCCHHHHHHH
Q 047010 107 FNNVIQALCGVGKIDKALLLLFLMYEH-GKIPSRTLYDTL 145 (153)
Q Consensus 107 ~~~li~~~~~~g~~~~a~~~~~~m~~~-~v~p~~~~~~~l 145 (153)
.=++++.|.+.|.+++|+++....+.. .-.|+......+
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 347899999999999999999877542 334555444433
No 336
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=41.76 E-value=54 Score=18.68 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=26.0
Q ss_pred CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 100 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
+.|+...||.+++.....+...-|..++.+..
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 46788899999999998888888877777664
No 337
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=41.20 E-value=40 Score=24.59 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVT 88 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~~ 88 (153)
=.+++.|.+.|.+++|+++....++-. .-|+...
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~l 144 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPL 144 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchh
Confidence 357999999999999999998876533 2344443
No 338
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=41.17 E-value=55 Score=20.76 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
+|......+.+..+.++.+.+++.|+..+..|.+-.++
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 44555566666677777777777777777777665554
No 339
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.32 E-value=1.1e+02 Score=22.69 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCCcHhh---HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 90 IHLHNVIDIGHIPRTIT---FNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
+++..+.+.|..++... ..+.+...+..|+.+-+..+ .+.|..++
T Consensus 182 eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L----l~~gad~n 229 (413)
T PHA02875 182 AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF----IKRGADCN 229 (413)
T ss_pred HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH----HHCCcCcc
Confidence 55566667776665432 23455544556665443333 34454444
No 340
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.14 E-value=41 Score=15.34 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhch
Q 047010 7 DFFEARKVIDYMFDNGYHPNVTTYT 31 (153)
Q Consensus 7 ~~~~a~~~~~~m~~~~~~~~~~~~~ 31 (153)
.++.|..+|+...... |++.+|-
T Consensus 2 E~dRAR~IyeR~v~~h--p~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVH--PEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhC--CCchHHH
Confidence 4678889998888753 6666653
No 341
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.11 E-value=1.1e+02 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 108 NNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
...+..|.+.|.+++|.++|++..+
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc
Confidence 3456688999999999999998865
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=40.05 E-value=1.3e+02 Score=22.57 Aligned_cols=22 Identities=9% Similarity=-0.121 Sum_probs=12.7
Q ss_pred HHHHHHccCcHHHHHHHHHHHH
Q 047010 110 VIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.+.+|.+.+....++....+.+
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 4556666666655555555543
No 343
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.03 E-value=1.5e+02 Score=21.81 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.++++.|...++.|--.++.=+.-.+++.-.+.....+++.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34444444444444444433333334444444444444444443
No 344
>PRK09857 putative transposase; Provisional
Probab=38.88 E-value=1.5e+02 Score=21.34 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
..++.-..+.++.++..++++.+.+.. +... ....++..-+.+.|.-+++.++.++|...|
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~------------------e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS-PKHK------------------ESLMTIAERLRQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC-cccc------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445544455566655666665554431 1111 122234444444454467888889998888
Q ss_pred CCCCH
Q 047010 135 KIPSR 139 (153)
Q Consensus 135 v~p~~ 139 (153)
+.++.
T Consensus 271 ~~~~~ 275 (292)
T PRK09857 271 VPLAD 275 (292)
T ss_pred CCHHH
Confidence 87653
No 345
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=38.68 E-value=1e+02 Score=19.61 Aligned_cols=84 Identities=18% Similarity=0.098 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
.|++.|.+-... .+-+...||.--.++.-.|+.++|++=+++..+. |-...... ..|.---.
T Consensus 61 ~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac----------------qa~vQRg~ 123 (175)
T KOG4555|consen 61 GALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC----------------QAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH----------------HHHHHHHH
Confidence 455555544433 2346788999999999999999999988887663 32221111 12222333
Q ss_pred HHHccCcHHHHHHHHHHHHHCC
Q 047010 113 ALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
-|...|+-+.|..-|....+.|
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhC
Confidence 4566777788888777766555
No 346
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=38.62 E-value=1.6e+02 Score=21.82 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 119 KIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 119 ~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
-++.|..+.+.+++.|+.++..||-
T Consensus 281 p~erAekf~k~irkLG~~~dG~syl 305 (350)
T PF14744_consen 281 PYERAEKFNKGIRKLGLSDDGQSYL 305 (350)
T ss_pred CHHHHHHHHHHHHHcCCCCCcchHH
Confidence 4566777777777777777766654
No 347
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=38.49 E-value=94 Score=19.01 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=25.8
Q ss_pred HHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 047010 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF-LMYEHGKIPSRTLYDT 144 (153)
Q Consensus 95 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~v~p~~~~~~~ 144 (153)
-...|-.+..+++.++.+.+.-. .+++++ +|....-..|..-|+-
T Consensus 16 RrqEGA~~~Dvs~SSv~sMLLEL-----GLRVYeaQ~erkes~Fnq~eFnK 61 (118)
T PRK13713 16 RRQEGAREKDVSFSSVASMLLEL-----GLRVYEAQMERKESGFNQTEFNK 61 (118)
T ss_pred HHHcCCCccCccHHHHHHHHHHH-----hHHHHHHHHHhhcCcccHHHHHH
Confidence 33445555566777777766433 467776 3333344467777773
No 348
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.33 E-value=81 Score=18.22 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
..-++++.+.++|+ .+....+.+-.+=...|+.+.|.+++..+. +| |. .|..++++
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--------------------aF~~Fl~a 75 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--------------------WFSKFLQA 75 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--------------------HHHHHHHH
Confidence 56677788888774 344455555554457789999999999998 43 33 77888999
Q ss_pred HHccCcHHHHHH
Q 047010 114 LCGVGKIDKALL 125 (153)
Q Consensus 114 ~~~~g~~~~a~~ 125 (153)
+...|.-+.|.+
T Consensus 76 LreT~~~~LA~e 87 (88)
T cd08819 76 LRETEHHELARE 87 (88)
T ss_pred HHHcCchhhhhc
Confidence 888887666543
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=38.31 E-value=2.6e+02 Score=23.99 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
+...|..|-+.|.+..++|-|.-.+..|..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 567899999999999999999888888754
No 350
>PRK08508 biotin synthase; Provisional
Probab=38.26 E-value=66 Score=22.78 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHCCCCCChhh--chHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010 8 FFEARKVIDYMFDNGYHPNVTT--YTILEAYEMLMNVKNDGL---KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 8 ~~~a~~~~~~m~~~~~~~~~~~--~~~l~a~~~~~~m~~~g~---~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 82 (153)
++...++++.+++.+ |+... .+.....+.+++|++.|+ ..+..|-..+....+....+++.++.++..++.|+
T Consensus 74 ~e~~~ei~~~ik~~~--p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 74 LEYVAEAAKAVKKEV--PGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred HHHHHHHHHHHHhhC--CCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 445555666665543 33222 122234667777777765 23444434344444455678888888888888887
Q ss_pred CchH
Q 047010 83 TPNV 86 (153)
Q Consensus 83 ~~~~ 86 (153)
+...
T Consensus 152 ~v~s 155 (279)
T PRK08508 152 GLCS 155 (279)
T ss_pred eecc
Confidence 5544
No 351
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.89 E-value=2.1e+02 Score=22.94 Aligned_cols=88 Identities=14% Similarity=0.239 Sum_probs=54.7
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 44 ~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 123 (153)
..|+..+......++. ...|++..++.+++++...+. ....++..+..+.. . .+......++++.. .++...+
T Consensus 192 ~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~-~~~It~~~v~~llg--~-~~~~~i~~lv~al~-~~d~~~a 264 (584)
T PRK14952 192 QEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAA-DTHVTYQRALGLLG--A-TDVALIDDAVDALA-ADDAAAL 264 (584)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccC-CCCcCHHHHHHHHC--C-CCHHHHHHHHHHHH-cCCHHHH
Confidence 3476666666655544 335888899999998865421 22334444444442 2 23334445666554 5789999
Q ss_pred HHHHHHHHHCCCCCC
Q 047010 124 LLLLFLMYEHGKIPS 138 (153)
Q Consensus 124 ~~~~~~m~~~~v~p~ 138 (153)
+.+++++.+.|..|.
T Consensus 265 l~~l~~l~~~g~d~~ 279 (584)
T PRK14952 265 FGAIESVIDAGHDPR 279 (584)
T ss_pred HHHHHHHHHcCCCHH
Confidence 999999887776653
No 352
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=37.71 E-value=1.9e+02 Score=22.33 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=52.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHH---cCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKN---DGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~---~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
..+.+.|..++..+.++ -|+...|... .|.+.+++... .-.+.....+--+.-++.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 46778899999999886 5777666433 77777775332 1122334444555666888899999
Q ss_pred HHHHHHHHHHcC
Q 047010 70 VMELLNEAIERG 81 (153)
Q Consensus 70 a~~l~~~m~~~~ 81 (153)
|.+.|..+.+..
T Consensus 324 A~~~f~~L~~~s 335 (468)
T PF10300_consen 324 AAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
No 353
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.65 E-value=2.5e+02 Score=23.66 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHHHH-HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNVK-NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
+..+.+.++. ..|+..+......+... -.|++..|+.++++....+. ...+...+..+. | .+|...+..+++
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~--~~It~~~V~~~L--G-~~d~~~i~~ll~ 254 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSA--NEVTETAVSGML--G-ALDQTYMVRLLD 254 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcc--CCcCHHHHHHHh--C-CCCHHHHHHHHH
Confidence 4444555443 34666666555555443 36889999999887665431 112223333333 2 334445666777
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 113 ALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
++. .++++.++.+++++...|+.+.
T Consensus 255 aL~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 255 ALA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 665 4889999999999988887654
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.38 E-value=38 Score=14.13 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=19.0
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 118 g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
|+++.|..+|+++.... .-+...|...++
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 56788999999887643 245555555443
No 355
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=37.32 E-value=1.1e+02 Score=19.44 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
.....--++.+|.+.+++++|...+++.++..
T Consensus 46 a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 46 AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44666778999999999999999999987753
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=37.28 E-value=1.9e+02 Score=22.23 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=46.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------HHHHHHHHcCCCCcHhhHHHHHHHHHccCc
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------IHLHNVIDIGHIPRTITFNNVIQALCGVGK 119 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 119 (153)
..+...|..|=+...+.|+++-|++.|++.... +.-.+ +.+..|.+.- ....-+|....++...|+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----~~L~lLy~~~g~~~~L~kl~~~a--~~~~~~n~af~~~~~lgd 417 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF----SGLLLLYSSTGDREKLSKLAKIA--EERGDINIAFQAALLLGD 417 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----HHHHHHHHHCT-HHHHHHHHHHH--HHTT-HHHHHHHHHHHT-
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----cccHHHHHHhCCHHHHHHHHHHH--HHccCHHHHHHHHHHcCC
Confidence 357889999999999999999999999885431 11111 1111111100 001135666666777788
Q ss_pred HHHHHHHHHHH
Q 047010 120 IDKALLLLFLM 130 (153)
Q Consensus 120 ~~~a~~~~~~m 130 (153)
+++..+++.+-
T Consensus 418 ~~~cv~lL~~~ 428 (443)
T PF04053_consen 418 VEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88777777543
No 357
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=37.11 E-value=2.4e+02 Score=23.32 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=25.3
Q ss_pred cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
+...|-+-+.--....+++.|.++|.+... ..|+...|.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~m 655 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWM 655 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhH
Confidence 556677777777777777777777776655 334544443
No 358
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=36.53 E-value=63 Score=24.79 Aligned_cols=61 Identities=20% Similarity=0.390 Sum_probs=43.4
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 53 TYTAVMDG--FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 53 t~~~ll~~--~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
-+.--+.+ +|+.|+.+....+|+..++.|.. |..++ ..+|.-+-.+|.-.+++++|+++..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tL--------------SAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTL--------------SAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHH--------------HHHHHHhcchhhhHhhHHHHHhhhh
Confidence 44444444 79999999999999999988742 21111 1357777778888888999888654
No 359
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.41 E-value=1.7e+02 Score=21.48 Aligned_cols=58 Identities=9% Similarity=0.139 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHN 94 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~ 94 (153)
..+|.++..+.++.+...|-.|+.+.-+. -++--++.|..+.+.-+.+|...+.-+..
T Consensus 3 ~~ff~~lr~A~vpvs~re~llL~egl~~~-v~~~~ld~Fy~LaraaLvkde~~ldkfd~ 60 (393)
T COG3825 3 ICFFNELRAARVPVSVREYLLLLEGLKQT-VVEYDLDLFYYLARAALVKDERHLDKFDQ 60 (393)
T ss_pred hHHHhHhhhcccccccchHHHHHHHHhhh-hhhhhhHHHHHHHHHhcCccHHHHHHHHH
Confidence 35667777777777888888888887553 33334777888878777788776644433
No 360
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.09 E-value=1.2e+02 Score=19.70 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHcCCCchHH
Q 047010 65 GRSNEVMELLNEAIERGVTPNVV 87 (153)
Q Consensus 65 g~~~~a~~l~~~m~~~~~~~~~~ 87 (153)
...++..+++..+.+.+..+|+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHH
Confidence 45666777777777777766655
No 361
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=35.97 E-value=2.6e+02 Score=23.38 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIE--------RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 121 (153)
+...|......|.+.|+.+.-.+.+-.+.. ..++-+...+..+.+|+. ++-...-.+.+|.+.++.+
T Consensus 808 ~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~-----svGMC~qAV~a~Lr~s~pk 882 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFT-----SVGMCDQAVEAYLRRSLPK 882 (1189)
T ss_pred HHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHH-----hhchHHHHHHHHHhccCcH
Confidence 445566666666666666554333322211 123333333333333331 1223444455555555555
Q ss_pred HHHHHHHHH
Q 047010 122 KALLLLFLM 130 (153)
Q Consensus 122 ~a~~~~~~m 130 (153)
.|...-.++
T Consensus 883 aAv~tCv~L 891 (1189)
T KOG2041|consen 883 AAVHTCVEL 891 (1189)
T ss_pred HHHHHHHHH
Confidence 555544444
No 362
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=35.88 E-value=2.1e+02 Score=22.19 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=63.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHH------H-------------------------------
Q 047010 47 LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT------L------------------------------- 89 (153)
Q Consensus 47 ~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~------~------------------------------- 89 (153)
.+-|+.-...+-+++...|+.++|...|++-+.. .|+..+ +
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 4567788899999999999999999999986543 233221 1
Q ss_pred -----------HHHHHHHHcCCCCcHhhHHHHH---HHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 90 -----------IHLHNVIDIGHIPRTITFNNVI---QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 90 -----------~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
+-.....++.+..|.....++| ..+...|++++|.-.|+.....- +-+...|..|+..|.-
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHh
Confidence 0011112223333333333333 35667788888888888765432 2367788888887753
No 363
>PRK00971 glutaminase; Provisional
Probab=35.80 E-value=1.7e+02 Score=21.28 Aligned_cols=111 Identities=12% Similarity=0.134 Sum_probs=61.1
Q ss_pred CCCCChhhchHHHHHHHHHHHHHcCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHH-----
Q 047010 22 GYHPNVTTYTILEAYEMLMNVKNDGLKPDV------YTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTL----- 89 (153)
Q Consensus 22 ~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~------~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~~~----- 89 (153)
|.+|+-..||++..++. +.|.+.|. .+-..+|.+-.....++..++.++++-.. .+..|..++
T Consensus 88 G~EPSG~~FNSi~~Le~-----~~g~P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~~i~~d~~v~~SE~~ 162 (307)
T PRK00971 88 GKEPSGDPFNSLVQLEL-----EQGKPRNPMINAGAIVVTDLLQGRLSEEPCERLLEFVRQLAGNPDILYDEVVASSELE 162 (307)
T ss_pred CCCCCCCCCcchhhhhc-----cCCCCCCccccHHHHHHHHhhccCCcHHHHHHHHHHHHHHhCCCCCcccHHHHHHHhh
Confidence 67888888888744433 22444443 23344443322233455666666666542 466777766
Q ss_pred ------HHHHHHHHcCCCC-cH-hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010 90 ------IHLHNVIDIGHIP-RT-ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 90 ------~~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
.+...|...|.-+ |+ .+...-..-|+-....++.-.+.-.+...|+.|
T Consensus 163 t~~RN~Ala~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P 218 (307)
T PRK00971 163 HADRNAAIAYLMKSFGNIENDVETVLDTYFHQCALEMSCVDLARAGLFLANGGVSP 218 (307)
T ss_pred ccHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCC
Confidence 5666677777655 32 344445555555555555555555555556555
No 364
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=35.79 E-value=2.3e+02 Score=22.79 Aligned_cols=87 Identities=21% Similarity=0.353 Sum_probs=54.9
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 44 ~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 123 (153)
..|+..+......++... .|++..+...+++....+- ...+.+.+..+... ......+ .++++.. .|+.+.|
T Consensus 206 kegi~i~~eAl~lIa~~a--~Gdlr~al~~Ldkli~~g~--g~It~e~V~~llg~--~~~~~if-~L~~ai~-~gd~~~A 277 (598)
T PRK09111 206 KEGVEVEDEALALIARAA--EGSVRDGLSLLDQAIAHGA--GEVTAEAVRDMLGL--ADRARVI-DLFEALM-RGDVAAA 277 (598)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcC--CCcCHHHHHHHhCC--CCHHHHH-HHHHHHH-cCCHHHH
Confidence 346666665555555543 4788888888887765541 23444455555432 2223333 5666554 5799999
Q ss_pred HHHHHHHHHCCCCCC
Q 047010 124 LLLLFLMYEHGKIPS 138 (153)
Q Consensus 124 ~~~~~~m~~~~v~p~ 138 (153)
+.+++.+...|..|-
T Consensus 278 l~~l~~l~~~G~~p~ 292 (598)
T PRK09111 278 LAEFRAQYDAGADPV 292 (598)
T ss_pred HHHHHHHHHcCCCHH
Confidence 999999988888774
No 365
>PRK12928 lipoyl synthase; Provisional
Probab=35.18 E-value=91 Score=22.34 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=21.2
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
|+..+-+.+|-++ ....++..+.++.+++.+
T Consensus 202 p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 202 PDIPTKSGLMLGL--GETEDEVIETLRDLRAVG 232 (290)
T ss_pred CCceecccEEEeC--CCCHHHHHHHHHHHHhcC
Confidence 4556667777776 346777777777777655
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.09 E-value=1.9e+02 Score=21.49 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=31.6
Q ss_pred HHHHHHCCCCCChhh---chHH------HHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 047010 15 IDYMFDNGYHPNVTT---YTIL------EAYEMLMNVKNDGLKPDVY--TYTAVMDGFCKVGRSNEVMELLN 75 (153)
Q Consensus 15 ~~~m~~~~~~~~~~~---~~~l------~a~~~~~~m~~~g~~~~~~--t~~~ll~~~~~~g~~~~a~~l~~ 75 (153)
++.+.+.|..|+... ++.| .-.++.+.+.+.|..|+.. .-.+.+-..++.|+.+.+..+++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 344445676665533 2333 3345666667777665543 11233444556667666555554
No 367
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.61 E-value=2.3e+02 Score=22.31 Aligned_cols=100 Identities=14% Similarity=0.277 Sum_probs=62.0
Q ss_pred HHHHHHHHH-HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010 34 EAYEMLMNV-KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVI 111 (153)
Q Consensus 34 ~a~~~~~~m-~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li 111 (153)
+....+... .+.|+..+......++.. -.|++..|..++++....+. .....+.+.+..+... ++....-.++
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~---~~~~~if~L~ 265 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGL---VDSSVIIEFV 265 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCC---CCHHHHHHHH
Confidence 334444333 345777776666666653 35889999999988755321 1122334445555422 2333444566
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010 112 QALCGVGKIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~ 139 (153)
++.. .|+.+.|+.+++++...|..|..
T Consensus 266 ~ai~-~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 266 EYII-HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred HHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 6665 48999999999999999987754
No 368
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=34.57 E-value=49 Score=25.42 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=46.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHH-HHHHHHHHHHHcCCCccHHH----HHHHHHHHHhcC-CHHHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKNDGLKPDVYT----YTAVMDGFCKVG-RSNEVMELL 74 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~a~~~~~~m~~~g~~~~~~t----~~~ll~~~~~~g-~~~~a~~l~ 74 (153)
..++++|+.+-++-.+.|-+.+ ...+ .|.+++.++.++|+.||..| -.-.+++|+-.| .++++.++-
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~S---Igl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr 288 (561)
T COG2987 216 AETLDEALALAEEATAAGEPIS---IGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELR 288 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceE---EEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHH
Confidence 4678888888888887763332 2223 67889999999999998765 445777788777 455555553
No 369
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=34.41 E-value=1.8e+02 Score=21.08 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=49.3
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120 (153)
Q Consensus 41 ~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 120 (153)
...+.|...+......++..+. ++...+..-++++...-......+.+.+..+....... ..-.++++.. .|+.
T Consensus 154 ~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~---~if~l~dai~-~~~~ 227 (343)
T PRK06585 154 ELAEAGLRITPDARALLVALLG--GDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASAL---SLDDAADAAL-AGDL 227 (343)
T ss_pred HHHHCCCCCCHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccc---cHHHHHHHHH-CCCH
Confidence 3445566666666666666544 35555555555544321111112223333333222222 2334555554 7789
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 047010 121 DKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 121 ~~a~~~~~~m~~~~v~p~ 138 (153)
..|..+++.+...|..|-
T Consensus 228 ~~a~~~l~~ll~~g~~p~ 245 (343)
T PRK06585 228 AAFERALDRALAEGTAPV 245 (343)
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 999999999998888773
No 370
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.80 E-value=1.7e+02 Score=24.64 Aligned_cols=27 Identities=4% Similarity=0.162 Sum_probs=19.7
Q ss_pred cHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 103 RTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..++..+++.+.++...+...+
T Consensus 735 ~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 735 DPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred ChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 667899999999998866655544433
No 371
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.70 E-value=1.9e+02 Score=21.20 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=56.2
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHH
Q 047010 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121 (153)
Q Consensus 43 ~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 121 (153)
.+.|+..+......++... .|+...+...++++... +-. .+...+..+.. ..++...+. ++++.. .|+..
T Consensus 181 ~~~g~~i~~~al~~l~~~~--~gdlr~~~~~lekl~~y~~~~---it~~~v~~~~~--~~~~~~if~-l~~ai~-~~~~~ 251 (367)
T PRK14970 181 VKEGIKFEDDALHIIAQKA--DGALRDALSIFDRVVTFCGKN---ITRQAVTENLN--ILDYDTYIN-VTDLIL-ENKIP 251 (367)
T ss_pred HHcCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHhC--CCCHHHHHH-HHHHHH-cCCHH
Confidence 3457666666666666542 36888888888877542 211 12222333322 223344444 666664 57899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 122 KALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 122 ~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
.|...++.+...|..| ......+..
T Consensus 252 ~a~~~~~~l~~~~~~~-~~il~~l~~ 276 (367)
T PRK14970 252 ELLLAFNEILRKGFDG-HHFIAGLAS 276 (367)
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 9999999998888766 344444433
No 372
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.69 E-value=2.3e+02 Score=22.09 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=51.1
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 44 ~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 123 (153)
..|+..+......+... -.|++..|..+++.....+ ....+...+..+.. ..+....-.++.+. ..|+.+.|
T Consensus 193 ~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~--~~~It~~~V~~~lg---~~~~~~vf~Li~ai-~~~d~~~a 264 (486)
T PRK14953 193 EEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYG--EGKVTIKVVEEFLG---IVSQESVRKFLNLL-LESDVDEA 264 (486)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHhC---CCCHHHHHHHHHHH-HCCCHHHH
Confidence 34666666666555543 3377888888887765443 11222233333321 12233344556665 45789999
Q ss_pred HHHHHHHHHCCCCCC
Q 047010 124 LLLLFLMYEHGKIPS 138 (153)
Q Consensus 124 ~~~~~~m~~~~v~p~ 138 (153)
+.+++.+...|..|.
T Consensus 265 l~~l~~L~~~g~~~~ 279 (486)
T PRK14953 265 IKFLRTLEEKGYNLN 279 (486)
T ss_pred HHHHHHHHHcCCCHH
Confidence 999999988887664
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.52 E-value=1.7e+02 Score=21.40 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=32.3
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+++..-..|..+|.+.+|..+.++..... +.+...+-.|+..+..-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~ 326 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATL 326 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHh
Confidence 45556668888899999998888876654 34666666777666543
No 374
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=33.52 E-value=44 Score=25.96 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHH----HHHHHHHHHcCCCCcHhh----HHHHHHHHHccC-cHHHHHHHH
Q 047010 64 VGRSNEVMELLNEAIERGVTPNVVT----LIHLHNVIDIGHIPRTIT----FNNVIQALCGVG-KIDKALLLL 127 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g-~~~~a~~~~ 127 (153)
..++++|++..++-++.+-+.+... -+++.++.+.++.||+.| ..-.+.+|+=.| .++++.++.
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr 279 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLR 279 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHH
Confidence 3467888888888877765444332 277788888888888764 333444566666 566665544
No 375
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.34 E-value=3.1e+02 Score=23.50 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCC-CccH-HHHHHHHHHHHhcC--CHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGL-KPDV-YTYTAVMDGFCKVG--RSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~-~~~~-~t~~~ll~~~~~~g--~~~~a~~l~~~m~~~ 80 (153)
+...+.+.+...-. ..+. .-...+|.+|++.+ ++++|+.+..++++.
T Consensus 793 KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 793 KVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 33444444444432 3333 44578999999999 999999999999876
No 376
>PRK05414 urocanate hydratase; Provisional
Probab=33.18 E-value=43 Score=26.10 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHH----HHHHHHHHHHcCCCCcHhh----HHHHHHHHHccC-cHHHHHHHH
Q 047010 64 VGRSNEVMELLNEAIERGVTPNVV----TLIHLHNVIDIGHIPRTIT----FNNVIQALCGVG-KIDKALLLL 127 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g-~~~~a~~~~ 127 (153)
..++|+|++..++-++.+-+.+.. .-+++.++.+.++.||+.| ..-.+.+|+=.| .++++.++.
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr 288 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELR 288 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHH
Confidence 346788888888887776444333 2277788888888888764 223344677666 666665544
No 377
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=33.15 E-value=2.9e+02 Score=23.83 Aligned_cols=62 Identities=8% Similarity=0.076 Sum_probs=47.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140 (153)
Q Consensus 62 ~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~ 140 (153)
-....+.+++++|..|...|+-+... ..|...-..+.+.+.|.+|..+|+.-.+....|-..
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~la-----------------lfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLA-----------------LFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 35667889999999999999877655 366677777777778999999998877766666443
No 378
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=33.14 E-value=1.9e+02 Score=20.93 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=25.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
-.++++.. .|+...|..++..+.+.|..| ......+..
T Consensus 248 ~~l~~ai~-~~~~~~a~~~~~~l~~~~~~~-~~il~~l~~ 285 (355)
T TIGR02397 248 IELLEAIL-NKDTAEALKILDEILESGVDP-EKFLEDLIE 285 (355)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 34556655 478999999999998877665 333444433
No 379
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.98 E-value=1e+02 Score=17.93 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
...|++.|+.++.+.|.-.-|.++-+.+...|
T Consensus 63 ~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 63 RKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred CCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 35678899999999988888888887777765
No 380
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=32.69 E-value=2e+02 Score=20.99 Aligned_cols=134 Identities=18% Similarity=0.166 Sum_probs=77.8
Q ss_pred CChHHHHHHHHHHHHCC--CCCChhhchHHHHHHHH-HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010 6 NDFFEARKVIDYMFDNG--YHPNVTTYTILEAYEML-MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~a~~~~-~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 82 (153)
++.+++........... ......++..-+..+.+ .+..+.|++.+...-..++..+. |+.-.+..-++++.-...
T Consensus 114 ~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~ 191 (334)
T COG1466 114 NKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAG 191 (334)
T ss_pred CCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCC
Confidence 34445555544444432 12223333333444344 45667788888888888888777 677777666666654332
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 83 TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
.. ..+...+..........+.. -++++ ...|+.+.|.++++.+...|..| .....++..
T Consensus 192 ~~-~I~~~~V~~~v~~~~~~~~f---~l~da-il~g~~~~a~~~l~~L~~~ge~p-~~il~~l~~ 250 (334)
T COG1466 192 DK-EITLEDVEEVVSDVAEFNIF---DLADA-LLKGDVKKALRLLRDLLLEGEEP-LKLLAALTR 250 (334)
T ss_pred CC-cCCHHHHHHHHhccccCCHH---HHHHH-HHCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHH
Confidence 22 33344555555555555542 23333 35789999999999999999776 444444433
No 381
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=32.45 E-value=2.8e+02 Score=22.68 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHH-------HHHcCC-----------C---CcHh-h
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTLIHLHN-------VIDIGH-----------I---PRTI-T 106 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~~~~~~~~-------~~~~~~-----------~---~~~~-~ 106 (153)
....|-....++.-.|+...|.++.++..+.. -.|+...++.... +.+.|. + .|-. .
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~ 221 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF 221 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH
Confidence 45778889999999999999999999988766 4677776622211 112221 1 1222 2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047010 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146 (153)
Q Consensus 107 ~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li 146 (153)
-.+-..-+.+.+++++|..++..+..++ ||..-|.-.+
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l 259 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGL 259 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHH
Confidence 3445566778999999999999998875 7666655443
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.25 E-value=1.3e+02 Score=23.73 Aligned_cols=77 Identities=8% Similarity=0.005 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC 115 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 115 (153)
...+.++..+-.-.+...-.-++..|.+.|..+.|.++.+.+-.+-. ...-|..-+.-+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--------------------~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--------------------KEGRYGEALSWFI 449 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------------------HCCCHHHHHHHHH
Confidence 44444444444444555666677777777777777777776644311 1124556666667
Q ss_pred ccCcHHHHHHHHHHHHH
Q 047010 116 GVGKIDKALLLLFLMYE 132 (153)
Q Consensus 116 ~~g~~~~a~~~~~~m~~ 132 (153)
++|+.+.+.++-..+.+
T Consensus 450 ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -----------------
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777666665555543
No 383
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.23 E-value=2.4e+02 Score=21.89 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=58.9
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 44 ~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 123 (153)
..|+..+......++... .|+...+...++.+....- +..+...+..+... .+ ......++.+. +.++++.|
T Consensus 191 ~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~--~~It~e~V~~~l~~--~~-~~~i~~li~si-~~~d~~~A 262 (472)
T PRK14962 191 AEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSE--GKITLETVHEALGL--IP-IEVVRDYINAI-FNGDVKRV 262 (472)
T ss_pred HcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHcC--CC-HHHHHHHHHHH-HcCCHHHH
Confidence 346666666666666543 5788888888888654321 11333344444322 22 24566677776 46899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 047010 124 LLLLFLMYEHGKIPSRTLYDT 144 (153)
Q Consensus 124 ~~~~~~m~~~~v~p~~~~~~~ 144 (153)
+.++.+|...|..|....-..
T Consensus 263 l~~l~~ll~~Gedp~~i~r~l 283 (472)
T PRK14962 263 FTVLDDVYYSGKDYEVLIQQA 283 (472)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 999999999998886554333
No 384
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=32.20 E-value=50 Score=20.08 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCCCCChh
Q 047010 11 ARKVIDYMFDNGYHPNVT 28 (153)
Q Consensus 11 a~~~~~~m~~~~~~~~~~ 28 (153)
-..+.++|.++|.+|+..
T Consensus 54 H~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 54 HLLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHHcCCCCChh
Confidence 346778888888888874
No 385
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=32.16 E-value=15 Score=19.15 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhch
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVTTYT 31 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~~~~ 31 (153)
|.-++...+|..|..+...|....|+
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~ 31 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWN 31 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeee
Confidence 33445555566665555555555554
No 386
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.90 E-value=1.5e+02 Score=24.55 Aligned_cols=82 Identities=11% Similarity=0.059 Sum_probs=52.3
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH----------HHHHHHHH-cCCCCcHhhHHHHHHHH
Q 047010 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVID-IGHIPRTITFNNVIQAL 114 (153)
Q Consensus 46 g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~li~~~ 114 (153)
|....-.|.+--+.-+...|+-.+|.++-.+-+ .||...+ .-|.++++ .+.+.+..-|.-++.+|
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c 754 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEAC 754 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHH
Confidence 333344455555666677777777777665543 4555544 23333333 33344467888999999
Q ss_pred HccCcHHHHHHHHHHHH
Q 047010 115 CGVGKIDKALLLLFLMY 131 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m~ 131 (153)
.+.|+.++|..++-+..
T Consensus 755 ~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HhcccHHHHhhhhhccC
Confidence 99999999998887653
No 387
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=31.64 E-value=90 Score=16.76 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHCCC
Q 047010 120 IDKALLLLFLMYEHGK 135 (153)
Q Consensus 120 ~~~a~~~~~~m~~~~v 135 (153)
+.-...+++...+.|+
T Consensus 50 ~~Yi~~Il~~W~~~gi 65 (77)
T PF07261_consen 50 FNYIEKILNNWKQKGI 65 (77)
T ss_dssp HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4444445555545444
No 388
>PRK00847 thyX FAD-dependent thymidylate synthase; Reviewed
Probab=31.56 E-value=1e+02 Score=20.95 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC--CCCCCHHHHH
Q 047010 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH--GKIPSRTLYD 143 (153)
Q Consensus 67 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~v~p~~~~~~ 143 (153)
.+.+.+.++++...|+.++..=+-+-.... .-.+.-|..+|--++.-=+..+-..+..++...|.+. .+.| .++.
T Consensus 130 ~~~~~~~Y~~l~~~g~~~E~AR~vLP~a~~t~~~~t~N~r~l~hf~~lR~~~~aq~EiR~~A~~m~~~~~~~~P--~~~~ 207 (217)
T PRK00847 130 AEAAYEAYEELLEKGIARELARYVLPLATYTRIYWTGNARSLLHFLSLRASEHAQWEIRELAEAMLEILKEVAP--IVFA 207 (217)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhCCCCcceEEEEEEeHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHCH--HHHH
Confidence 577888999999998877544211110000 1122345566777775434444455556666655432 2333 4455
Q ss_pred HHHHHhh
Q 047010 144 TLIKKLD 150 (153)
Q Consensus 144 ~li~~~~ 150 (153)
.+...|.
T Consensus 208 ~~~~~~~ 214 (217)
T PRK00847 208 AFGPYCL 214 (217)
T ss_pred Hhhhhhh
Confidence 5544443
No 389
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=31.51 E-value=2.5e+02 Score=21.75 Aligned_cols=80 Identities=9% Similarity=0.129 Sum_probs=47.5
Q ss_pred CCCCCChhhchHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 047010 21 NGYHPNVTTYTILEAYEMLMNVKNDGLKPD----VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96 (153)
Q Consensus 21 ~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~----~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~ 96 (153)
+.-+-.-++|+. ..|.++...-.+|- .+|...+|+...+.|+.-.+ ++.+...+..|...
T Consensus 28 kk~PeG~V~W~e----~TF~rL~~a~PE~L~s~f~vthaMlLnvl~r~gd~~~~---~~~Ll~~nhe~~~~--------- 91 (461)
T PF12029_consen 28 KKPPEGFVSWSE----KTFERLIEAEPEPLTSRFRVTHAMLLNVLARPGDAFAA---MRHLLRDNHEPRAR--------- 91 (461)
T ss_pred CCCCCCccCCCH----HHHHHHhcCCCCCCccCeeccHHHHHHHHcCCCcHHHH---HHHHHHHcCCCHHH---------
Confidence 333334455654 36777776655442 26788888999888874433 34444444444433
Q ss_pred HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 97 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
+......|..+|+.+...||
T Consensus 92 -------------------~~~~~~ra~~i~r~L~~agv 111 (461)
T PF12029_consen 92 -------------------QRRLIRRAIEIYRSLLDAGV 111 (461)
T ss_pred -------------------HHHHHHHHHHHHHHHHhCCC
Confidence 44556667777777776665
No 390
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.47 E-value=55 Score=17.77 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=17.7
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 117 ~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
.++.+.+.+++++..+.|+.|.......+..+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45566666666666655666655554444443
No 391
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=31.43 E-value=41 Score=23.27 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 047010 122 KALLLLFLMYEHGKIPSRT 140 (153)
Q Consensus 122 ~a~~~~~~m~~~~v~p~~~ 140 (153)
.|+.+++.+.+.|++|+..
T Consensus 68 ~Al~i~~lL~~~Gv~ps~v 86 (269)
T COG3294 68 SALAIYKLLLEKGVKPSGV 86 (269)
T ss_pred hHHHHHHHHHhcCCCcccc
Confidence 6899999999999999864
No 392
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.07 E-value=2.8e+02 Score=22.21 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=50.3
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHH
Q 047010 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124 (153)
Q Consensus 45 ~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 124 (153)
.|+..+......++..+ .|++..++..++++...+- ...+.+.+..+.... .+ .....++++.. .|+...++
T Consensus 195 egl~i~~eal~~La~~s--~Gdlr~al~~LekL~~y~~--~~It~e~V~~ll~~s--~~-~~vf~Lidal~-~~d~~~al 266 (585)
T PRK14950 195 EGINLEPGALEAIARAA--TGSMRDAENLLQQLATTYG--GEISLSQVQSLLGIS--GD-EEVKALAEALL-AKDLKAAL 266 (585)
T ss_pred cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHhcCC--CH-HHHHHHHHHHH-cCCHHHHH
Confidence 45555555555555433 3688888888887655321 112223333333222 12 23346666664 57899999
Q ss_pred HHHHHHHHCCCCCC
Q 047010 125 LLLFLMYEHGKIPS 138 (153)
Q Consensus 125 ~~~~~m~~~~v~p~ 138 (153)
+++..+.+.|..|.
T Consensus 267 ~~l~~L~~~g~~~~ 280 (585)
T PRK14950 267 RTLNAVAADGADLR 280 (585)
T ss_pred HHHHHHHHcCCCHH
Confidence 99999988887543
No 393
>PRK10292 hypothetical protein; Provisional
Probab=30.92 E-value=94 Score=16.76 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 65 GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 65 g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
|+..++.++|++|=+ ++-+.+..|.+.|.+|..+....+|..-...+..+.-......|
T Consensus 2 ~n~~~~d~lY~EmCR-------VVGdvVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 2 GNRTKEDELYREMCR-------VVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred CchHHHHHHHHHHHH-------HHHHHHHHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 456677778887743 23356677888888888888888885555455444333333333
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.73 E-value=1.3e+02 Score=18.40 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
.+.++|+.|...|+--... .-|...-..+...|++++|..+|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A-----------------~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLA-----------------LFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBH-----------------HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8899999998887644333 3788888888899999999999875
No 395
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.53 E-value=1.1e+02 Score=17.37 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=20.8
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 116 ~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
.....+.|..+++.+..+| ...|..+.+++...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~ 74 (84)
T cd08326 42 AGSRRDQARQLLIDLETRG----KQAFPAFLSALRET 74 (84)
T ss_pred CCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhc
Confidence 3445777777777777776 45566666655443
No 396
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=29.55 E-value=99 Score=16.59 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI 136 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~m~~~~v~ 136 (153)
.++|.--.+.| +..|.++.+.|.+.|+.
T Consensus 22 ~S~lQR~~~IG-ynrAariid~lE~~GiV 49 (63)
T smart00843 22 TSLLQRRLRIG-YNRAARLIDQLEEEGIV 49 (63)
T ss_pred hHHHHHHHhcc-hhHHHHHHHHHHHCcCC
Confidence 36777777777 88999999999999864
No 397
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.52 E-value=1.5e+02 Score=18.93 Aligned_cols=45 Identities=29% Similarity=0.298 Sum_probs=35.7
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
+-|...++.+. ..|-+.+...++++|.++|+.-+...|+-++.-.
T Consensus 110 ~GtlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 110 TGTLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred eehhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34666666666 4678888889999999999999999998777543
No 398
>PRK14135 recX recombination regulator RecX; Provisional
Probab=29.18 E-value=2e+02 Score=20.02 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
.+...+...|+.++.+ ...+..+...+..+.|..+...
T Consensus 127 ~I~~kL~~kGi~~~~I--e~~l~~l~~~~~~d~a~~~~~k 164 (263)
T PRK14135 127 VIKQKLLQKGIEDEII--EEALSEYTEEDQIEVAQKLAEK 164 (263)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHhCChhhHHHHHHHHHHH
Confidence 4445556666655433 3444444344455555555543
No 399
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=29.06 E-value=3.4e+02 Score=22.55 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~ 76 (153)
...-+++++++|..|+..-.. ..|+-.|.+.+|-++|.+
T Consensus 619 li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH
Confidence 334445666677777754322 223444455555555443
No 400
>PF04960 Glutaminase: Glutaminase; InterPro: IPR015868 Glutaminases (3.5.1.2 from EC) deaminate glutamine to glutamate. In Bacillus subtilis, glutaminase is encoded by glnA, which is part of an operon, glnA-glnT (formerly ybgJ-ybgH), where glnT encodes a glutamine transporter. The glnA-glnT operon is regulated by the 2-component system GlnK-GlnL in response to glutamine []. This entry represents the core structural motif of a family of glutaminases that include GlnA, which are characterised by their beta-lactamase-like topology, containing a cluster of alpha-helices and an alpha/beta sandwich. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli. Some species have two isozymes that may both be designated A (GlsA1 and GlsA2). ; GO: 0004359 glutaminase activity, 0006541 glutamine metabolic process; PDB: 2OSU_B 3BRM_A 3AGF_B 1MKI_B 2PBY_C 3SS5_D 3SS3_A 3SS4_C 3UO9_C 3UNW_C ....
Probab=28.97 E-value=2.2e+02 Score=20.48 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=53.1
Q ss_pred CCCCChhhchHHHHHHHHHHHHHcCCCccHHHH--HHHHHHHHhcC----CHHHHHHHHHHHHH-cCCCchHHHH-----
Q 047010 22 GYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTY--TAVMDGFCKVG----RSNEVMELLNEAIE-RGVTPNVVTL----- 89 (153)
Q Consensus 22 ~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~--~~ll~~~~~~g----~~~~a~~l~~~m~~-~~~~~~~~~~----- 89 (153)
|.+|+-..||++..++. +.|.+.|...= .+++..+.... .++..++.++++.. ..+..|..++
T Consensus 67 G~EPsg~~FNsi~~le~-----~~g~P~NPmiNaGAI~~~sll~~~~~~~~~~~il~~~~~l~g~~~l~~d~~v~~SE~~ 141 (286)
T PF04960_consen 67 GVEPSGDPFNSIVQLEL-----EKGKPRNPMINAGAIATTSLLKGETSEERFERILEFLRKLAGNRELSLDEEVYRSERE 141 (286)
T ss_dssp -SS-SSSTTTTHHHHHT-----STTSBS-TTSHHHHHHHHHHSTTTSHHHHHHHHHHHHHHHHTTTTEEE-HHHHHHHHH
T ss_pred CCCCCCCCccchhhhhc-----CCCCCCCccccccHHHHHHhhcCCcchhHHHHHHHHHHHHhCCCCcccCHHHHHHHHh
Confidence 67888888888732221 22444444221 12222222222 34445555555554 3466777776
Q ss_pred ------HHHHHHHHcCCCCc-H-hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010 90 ------IHLHNVIDIGHIPR-T-ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 90 ------~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
.+...|...|.-++ + .+...-...|+-.-..++...+.--+...|+.|
T Consensus 142 ~~~rNrAla~lL~~~g~l~~d~~~~Ld~Yf~~Csi~v~~~dLA~~~a~LAn~G~~P 197 (286)
T PF04960_consen 142 TGDRNRALAYLLKSKGILENDVEEVLDLYFQQCSIEVTCEDLARMAATLANGGVNP 197 (286)
T ss_dssp TTHHHHHHHHHHHHTTSSSSTHHHHHHHHHHHHTEEEEHHHHHHHHHHHHTTTBET
T ss_pred ChHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhhhHeeHHHHHHHHHHHhcCCCcC
Confidence 45566666666553 2 234444444444444444444444444555544
No 401
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.90 E-value=1.5e+02 Score=18.56 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=25.5
Q ss_pred HHHHHHHcc-CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 109 NVIQALCGV-GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 109 ~li~~~~~~-g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+++..+... +..-.|.++++.+.+.+...+..|-.--|+.+.+.|
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 444444433 345567777777776665556665555555555443
No 402
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=28.77 E-value=19 Score=20.40 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=11.2
Q ss_pred HcCCCCcHhhHHHHHHHHHccCcH
Q 047010 97 DIGHIPRTITFNNVIQALCGVGKI 120 (153)
Q Consensus 97 ~~~~~~~~~~~~~li~~~~~~g~~ 120 (153)
+.....+..+|-++|++|++.|.+
T Consensus 17 QYeLsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 17 QYELSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp HHTTTTTTTB------TTSS--EE
T ss_pred HHHhhcccceeeeeecccccceEE
Confidence 445556777999999999999853
No 403
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=28.68 E-value=1.8e+02 Score=19.42 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC----c---
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG----K--- 119 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~--- 119 (153)
.-|...|.-.++.....++.+++++-... .+.|+.. .++-.+=.+|...+ +
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h-----------------dAlw~lGnA~ts~A~l~~d~~~ 91 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH-----------------DALWCLGNAYTSLAFLTPDTAE 91 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H-----------------HHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH-----------------HHHHHHHHHHHHHHhhcCChHH
Confidence 45777777777777766676666655331 2334332 23333333332222 2
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 120 ----IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 120 ----~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
+++|...|+...+ ..|+..+|..-++...+
T Consensus 92 A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 92 AEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 4455555555544 46999999888877654
No 404
>PHA02148 hypothetical protein
Probab=28.57 E-value=1.2e+02 Score=17.52 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=26.7
Q ss_pred HHHHCCCCCChh--hchHH--HHHHHHHHHHHcCCCccHHHHHHHH
Q 047010 17 YMFDNGYHPNVT--TYTIL--EAYEMLMNVKNDGLKPDVYTYTAVM 58 (153)
Q Consensus 17 ~m~~~~~~~~~~--~~~~l--~a~~~~~~m~~~g~~~~~~t~~~ll 58 (153)
+|.+..++|.+. +..-+ .|+++|.++.++ +..|+.+..-+-
T Consensus 13 ~~~~~~i~P~v~~~~i~~~k~~A~E~FK~iE~R-IA~D~~~L~~~A 57 (110)
T PHA02148 13 QMKKTKIEPTVTPLPISDLKVEAFELFKKIEER-IAHDQTRLEELA 57 (110)
T ss_pred HccccccCCCCCCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 456666777765 44444 889999998876 445666655443
No 405
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=28.50 E-value=79 Score=15.87 Aligned_cols=16 Identities=13% Similarity=0.356 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHcCCCch
Q 047010 68 NEVMELLNEAIERGVTPN 85 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~ 85 (153)
.+|.+-|++ ..|+++|
T Consensus 31 ~~Av~~fQ~--~~gL~~t 46 (57)
T PF01471_consen 31 REAVKAFQK--ANGLPVT 46 (57)
T ss_dssp HHHHHHHHH--HTTS-SS
T ss_pred HHHHHHHHH--HcCcCCC
Confidence 445555553 3444444
No 406
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=28.43 E-value=1.7e+02 Score=18.87 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=25.9
Q ss_pred HHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 35 AYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 35 a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
-+.++.+.... .+.......-.-|.-..+.++++.|.++...+.-.
T Consensus 73 RL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 73 RLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444333333 34444444445555566788899999998888654
No 407
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=28.02 E-value=1.6e+02 Score=23.01 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC----CchHHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGV----TPNVVTL 89 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~----~~~~~~~ 89 (153)
+....+....|++.++..++++|...=. .-+..+|
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 6678889999999999999999876433 3555555
No 408
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=27.81 E-value=23 Score=27.36 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH------------------HHHHHHHHcCCCCcHhhHHHHHHHHH
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL------------------IHLHNVIDIGHIPRTITFNNVIQALC 115 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~li~~~~ 115 (153)
|++|..+..|+-.+- -..+=++|...+-.-+..++ .++.+-+-.-..|.+-+|.+++..|+
T Consensus 493 y~iL~~cl~Rn~g~~-d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYG 571 (650)
T KOG4334|consen 493 YNILRDCLSRNLGWN-DLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYG 571 (650)
T ss_pred HHHHHHHHHhhcCCc-ceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhh
Confidence 677777776654442 22233445444444444433 34444445566799999999999998
Q ss_pred cc
Q 047010 116 GV 117 (153)
Q Consensus 116 ~~ 117 (153)
+.
T Consensus 572 r~ 573 (650)
T KOG4334|consen 572 RL 573 (650)
T ss_pred hh
Confidence 76
No 409
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.80 E-value=3.5e+02 Score=22.38 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=56.9
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 44 ~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 123 (153)
..|+..+......++.. -.|++..|..++++....| ....+...+..+.. ..+....-.++++..+ ++.+.+
T Consensus 192 kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg--~g~IT~edV~~lLG---~~d~e~IfdLldAI~k-~d~~~a 263 (702)
T PRK14960 192 KEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYG--QGAVHHQDVKEMLG---LIDRTIIYDLILAVHQ-NQREKV 263 (702)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHhc---cCCHHHHHHHHHHHHh-cCHHHH
Confidence 44666666666666554 3589999999988766544 12233444444443 2333456667777764 678999
Q ss_pred HHHHHHHHHCCCCCC
Q 047010 124 LLLLFLMYEHGKIPS 138 (153)
Q Consensus 124 ~~~~~~m~~~~v~p~ 138 (153)
+.+++++.+.|..++
T Consensus 264 l~~L~el~~~g~d~~ 278 (702)
T PRK14960 264 SQLLLQFRYQALDVS 278 (702)
T ss_pred HHHHHHHHHhCCCHH
Confidence 999999988887654
No 410
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=27.40 E-value=1.8e+02 Score=18.92 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 047010 61 FCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+.+.|+|.+|+.+|+++...+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHhCCHHHHHHHHHHHhccC
Confidence 567778888888888875543
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.37 E-value=1.3e+02 Score=17.15 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIE----RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
..+.|++.+|.+-+.+... .+...... +-....-.+.......|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~--------------~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNS--------------GLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhH--------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567888888666666544 22222100 0011222344556688999999999988753
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.34 E-value=1.5e+02 Score=18.01 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|..+.+.+.+.+. .....--+-+..+.+.|++++|+.. -.. ...||...|-++-.
T Consensus 24 EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~---~~~-------------------~~~pdL~p~~AL~a- 79 (116)
T PF09477_consen 24 EANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL---PQC-------------------HCYPDLEPWAALCA- 79 (116)
T ss_dssp HHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH---HTT-------------------S--GGGHHHHHHHH-
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh---ccc-------------------CCCccHHHHHHHHH-
Confidence 66666777766643 2233333444556777888877211 111 11367778876644
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHH
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLY 142 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~ 142 (153)
.+.|-.+++...+.++...| .|....|
T Consensus 80 -~klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 80 -WKLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp -HHCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred -HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 47888888888888887665 3444433
No 413
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.26 E-value=2.6e+02 Score=20.58 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH--
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY-- 131 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-- 131 (153)
.+..-..|..+|.+.+|.++.+...... | .+...|--++..++..||--.|..-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--p-----------------L~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--P-----------------LSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--h-----------------hhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 3455667888999999998888766432 1 244578899999999998666666555553
Q ss_pred ---HCCCCCCHHHHHH
Q 047010 132 ---EHGKIPSRTLYDT 144 (153)
Q Consensus 132 ---~~~v~p~~~~~~~ 144 (153)
+.|+..+.+.+..
T Consensus 343 leaelgi~vddsieew 358 (361)
T COG3947 343 LEAELGIDVDDSIEEW 358 (361)
T ss_pred HHHHhCCCcchhHHHH
Confidence 4588777766653
No 414
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.87 E-value=1.4e+02 Score=17.48 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCc
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 119 (153)
...++..|...+++++|..-+.++......++ .+..++....+. -......|..++..+++.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~-vv~~~i~~~le~-~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQHHE-VVKVLLTCALEE-KRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcchHH-HHHHHHHHHHcC-CccHHHHHHHHHHHHHHcCC
Confidence 45578888999999999999988754322222 122333333333 12344567777777775553
No 415
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=26.80 E-value=1.3e+02 Score=17.23 Aligned_cols=25 Identities=4% Similarity=0.127 Sum_probs=20.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
.|..+++++...++.+++..+|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l 28 (88)
T TIGR02531 4 LLDELFDAILTLKNREECYRFFDDI 28 (88)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5778888888888998888888776
No 416
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=26.77 E-value=1.1e+02 Score=16.42 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=22.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKI 136 (153)
Q Consensus 107 ~~~li~~~~~~g~~~~a~~~~~~m~~~~v~ 136 (153)
-.++|.--.+.| +..|.++.+.|.+.|+.
T Consensus 22 S~S~lQR~~rIG-ynrAariid~LE~~GiV 50 (65)
T PF09397_consen 22 SISLLQRKFRIG-YNRAARIIDQLEEEGIV 50 (65)
T ss_dssp CHHHHHHHHT---HHHHHHHHHHHHHCTSB
T ss_pred cHHHHHHHhCCC-HHHHHHHHHHHHHCCCC
Confidence 346777777887 89999999999999874
No 417
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=26.73 E-value=58 Score=18.04 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=16.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhc
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTY 30 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~ 30 (153)
+........|...+...|+.|+-..|
T Consensus 47 N~~~~~~~~V~~HL~~~Gf~~~Y~~W 72 (77)
T PF13963_consen 47 NEKRQSRDDVHEHLVCRGFMPNYTVW 72 (77)
T ss_pred cCccCCHHHHHHHHHHhCCCCCCCee
Confidence 33445566777777777777765554
No 418
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.62 E-value=3.4e+02 Score=21.82 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=43.4
Q ss_pred ccCChHHHHHHHHHHHHCC-CCCChhhch--HH-------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNG-YHPNVTTYT--IL-------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~-~~~~~~~~~--~l-------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l 73 (153)
..+++.+..++++...+.. +-++..... .+ .-+.+-.+|.+. .+....+|-++=--|--.|..++|.+.
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 4567888888888877642 222221111 11 222222333333 234557888877777777888888888
Q ss_pred HHHHHH
Q 047010 74 LNEAIE 79 (153)
Q Consensus 74 ~~~m~~ 79 (153)
|.+-..
T Consensus 335 ~SKat~ 340 (611)
T KOG1173|consen 335 FSKATT 340 (611)
T ss_pred HHHHhh
Confidence 887543
No 419
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=26.43 E-value=1.9e+02 Score=21.12 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=34.1
Q ss_pred HHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCC--------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047010 13 KVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK--------PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83 (153)
Q Consensus 13 ~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~--------~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 83 (153)
++++.+++.|+..+..|-..+...+.++.+.+.|+. ++..++..+- ...|.++.+.+.++.+.+.|+.
T Consensus 72 ~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~r---g~~g~f~~v~~~i~~l~~~g~~ 147 (358)
T TIGR02109 72 ELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIA---GYKNAFEQKLAMARAVKAAGLP 147 (358)
T ss_pred HHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhc---CCccHHHHHHHHHHHHHhCCCc
Confidence 333444444443333333332233455555555431 3344554431 2235678888888888887754
No 420
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=26.30 E-value=1.5e+02 Score=18.30 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHHhhcC
Q 047010 136 IPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 136 ~p~~~~~~~li~~~~~~ 152 (153)
.+...|-.+||+-++++
T Consensus 35 ews~sTV~TLl~RL~KK 51 (123)
T COG3682 35 EWSYSTVKTLLNRLVKK 51 (123)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 34445555555555444
No 421
>PLN02789 farnesyltranstransferase
Probab=26.28 E-value=2.6e+02 Score=20.37 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 82 (153)
+.+++.+.+.. +.|-..|+-.-..+.+.|+++++++.++++.+.+.
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 44444444332 24667777777777777888888888888877654
No 422
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=25.55 E-value=2e+02 Score=20.96 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=7.8
Q ss_pred hHHHHHHHHHccCc
Q 047010 106 TFNNVIQALCGVGK 119 (153)
Q Consensus 106 ~~~~li~~~~~~g~ 119 (153)
+||++++..=+.++
T Consensus 111 S~Na~vNy~Nrnas 124 (308)
T PF03820_consen 111 SYNAAVNYTNRNAS 124 (308)
T ss_pred HHHHHHhhhccCCC
Confidence 56666665555443
No 423
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=25.54 E-value=2.2e+02 Score=21.47 Aligned_cols=39 Identities=10% Similarity=-0.130 Sum_probs=28.8
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~ 150 (153)
..+-+.+++..|..+|..+......|....+..++..+|
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~ 176 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLT 176 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHH
Confidence 355578899999999999998877676666555554444
No 424
>PRK04841 transcriptional regulator MalT; Provisional
Probab=25.24 E-value=4.1e+02 Score=22.23 Aligned_cols=66 Identities=14% Similarity=-0.011 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC--C-cHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI--P-RTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
++..+-..+...|++++|...+++..... ...+.. + ....+..+-..+...|++++|...+.+
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLI--------------EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44445556677778887777777654410 000100 1 122344455566677999999999887
Q ss_pred HHH
Q 047010 130 MYE 132 (153)
Q Consensus 130 m~~ 132 (153)
...
T Consensus 599 al~ 601 (903)
T PRK04841 599 GLE 601 (903)
T ss_pred hHH
Confidence 754
No 425
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.19 E-value=2.9e+02 Score=20.45 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=50.0
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHH
Q 047010 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124 (153)
Q Consensus 45 ~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 124 (153)
.|...+......++.. -.|++..|..+++.....|- ...+.+.+.++. ..++....-.++++.. .++.+.++
T Consensus 194 ~g~~i~~~al~~ia~~--s~G~~R~al~~l~~~~~~~~--~~It~~~v~~~l---~~~~~~~i~~l~~ai~-~~~~~~~~ 265 (363)
T PRK14961 194 ESIDTDEYALKLIAYH--AHGSMRDALNLLEHAINLGK--GNINIKNVTDML---GLLNEKQSFLLTDALL-KKDSKKTM 265 (363)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHH---CCCCHHHHHHHHHHHH-cCCHHHHH
Confidence 3555555544444443 24778888888877655431 112222222222 2234444556666664 47899999
Q ss_pred HHHHHHHHCCCCCCH
Q 047010 125 LLLFLMYEHGKIPSR 139 (153)
Q Consensus 125 ~~~~~m~~~~v~p~~ 139 (153)
.+++.+.+.|..|..
T Consensus 266 ~~~~~l~~~g~~~~~ 280 (363)
T PRK14961 266 LLLNKISSIGIEWEN 280 (363)
T ss_pred HHHHHHHHcCCCHHH
Confidence 999999888876643
No 426
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=25.02 E-value=37 Score=27.11 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHcCCCCcHhhHHH
Q 047010 33 LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV---TPNVVTLIHLHNVIDIGHIPRTITFNN 109 (153)
Q Consensus 33 l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (153)
|.+..+=.+|++...+.|..-|+-|+ ..+.|..+-.-.+++++.+.|+ .|+..+-+.+.+....++.||+.+|+-
T Consensus 450 llaaaidtrmfhe~tq~daal~krlv--p~kng~r~f~~~m~rrlkrl~i~k~dp~~lt~ee~~~farlnidpdtit~~r 527 (935)
T KOG4230|consen 450 LLAAAIDTRMFHENTQSDAALYKRLV--PVKNGKRKFTPSMIRRLKRLGIEKTDPEDLTPEEIKKFARLNIDPDTITINR 527 (935)
T ss_pred HHHHHHHHHHHhhcccchHHHHHhhc--cccCCeeecCHHHHHHHHHhccccCCcccCCHHHHHHhHcccCCCCeeEEEE
Confidence 35666667888887777877787775 3566766667777777777664 355555566777777777777776665
Q ss_pred HHH
Q 047010 110 VIQ 112 (153)
Q Consensus 110 li~ 112 (153)
+++
T Consensus 528 vld 530 (935)
T KOG4230|consen 528 VLD 530 (935)
T ss_pred Eec
Confidence 543
No 427
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.97 E-value=1.9e+02 Score=18.44 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~ 96 (153)
+...++.++.+...+-. ..-.--|--++.|.+++++++++.+.+.+. .|+..--..+.++.
T Consensus 53 ~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 53 EGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNRQALELKETI 114 (149)
T ss_pred HhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcHHHHHHHHHH
Confidence 77788888876322222 223334556789999999999999998876 45544333343333
No 428
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.32 E-value=3.9e+02 Score=21.67 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=53.9
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH
Q 047010 44 NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122 (153)
Q Consensus 44 ~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (153)
+.|+..+......++... .|++..|...++++... |-..+ ...+.... ..++...+-.++++.. .++...
T Consensus 195 ~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It---~~~V~~~l---~~~~~~~iF~L~dai~-~~~~~~ 265 (614)
T PRK14971 195 KEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNIT---YKSVIENL---NILDYDYYFRLTDALL-AGKVSD 265 (614)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcc---HHHHHHHh---CCCCHHHHHHHHHHHH-cCCHHH
Confidence 457766666555555544 57888898888876542 21222 22222222 2244445566777775 468999
Q ss_pred HHHHHHHHHHCCCCCC
Q 047010 123 ALLLLFLMYEHGKIPS 138 (153)
Q Consensus 123 a~~~~~~m~~~~v~p~ 138 (153)
|+.+++.+...|..|.
T Consensus 266 al~ll~~Ll~~g~~~~ 281 (614)
T PRK14971 266 SLLLFDEILNKGFDGS 281 (614)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 9999999998887764
No 429
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.31 E-value=3.4e+02 Score=21.08 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc---H-hhHHHHHHHHHccCcHH
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR---T-ITFNNVIQALCGVGKID 121 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~ 121 (153)
-..++++. +.++++.|..++..|...|..|....-+++....+.-...| . ....++..++-..|-.+
T Consensus 247 i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e 317 (472)
T PRK14962 247 VRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAE 317 (472)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcc
Confidence 34444444 56899999999999999999998876666655554333233 1 23455555555555443
No 430
>PHA02874 ankyrin repeat protein; Provisional
Probab=24.16 E-value=3.1e+02 Score=20.58 Aligned_cols=37 Identities=8% Similarity=0.040 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCCHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYT---YTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t---~~~ll~~~~~~g~~~~a~ 71 (153)
.-.++++.+.+.|..++... ++. +-..++.|+.+-+.
T Consensus 46 g~~~iv~~Ll~~Ga~~n~~~~~~~t~-L~~A~~~~~~~iv~ 85 (434)
T PHA02874 46 GDAKIVELFIKHGADINHINTKIPHP-LLTAIKIGAHDIIK 85 (434)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHH
Confidence 44567777788887665422 233 33344555554433
No 431
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=24.05 E-value=2.9e+02 Score=25.31 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=39.7
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHhh
Q 047010 104 TITFNNVIQALCGVGKIDKALLLLFLMYE--HGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~v~p~~~~~~~li~~~~ 150 (153)
.++.|+++++|..+.+++..-++-.-..+ ....|=..-|-.+|+++|
T Consensus 1078 SFVcnalM~vc~gh~d~dRiNdiAn~caelTa~c~~LS~eWlGvlKaLC 1126 (2220)
T KOG3598|consen 1078 SFVCNALMEVCQGHRDFDRINDIANYCAELTANCPPLSEEWLGVLKALC 1126 (2220)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 36899999999999999999888877754 467888888889998876
No 432
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=24.02 E-value=3.7e+02 Score=21.32 Aligned_cols=100 Identities=22% Similarity=0.342 Sum_probs=60.1
Q ss_pred HHHHHHHHHH-HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNVK-NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
.....+..+. +.|+..+...+..+.. .-.|....++.++++....|- ...+...++.|. |.. |....-.++.
T Consensus 182 ~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~l--G~~-~~~~~~~~~~ 254 (515)
T COG2812 182 EIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGE--GEITLESVRDML--GLT-DIEKLLSLLE 254 (515)
T ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccC--CcccHHHHHHHh--CCC-CHHHHHHHHH
Confidence 3334444443 3466666666555443 456788999999999988763 333333333333 222 2233334444
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCHHH
Q 047010 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTL 141 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~v~p~~~~ 141 (153)
+.. .++.+.++..++++.+.|..|....
T Consensus 255 ~i~-~~d~~~~~~~~~~l~~~G~~~~~~l 282 (515)
T COG2812 255 AIL-KGDAKEALRLINELIEEGKDPEAFL 282 (515)
T ss_pred HHH-ccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 443 6789999999999998887775443
No 433
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=23.97 E-value=94 Score=17.05 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 047010 66 RSNEVMELLNEAIERGVTP 84 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~~~~~ 84 (153)
..++|.+++++|++.|-.+
T Consensus 51 ~~~~A~e~W~~L~~~GW~~ 69 (75)
T PF07864_consen 51 TREEARELWKELQKTGWRR 69 (75)
T ss_pred EHHHHHHHHHHHHHcCCEE
Confidence 4688999999999988543
No 434
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=23.79 E-value=1.5e+02 Score=16.84 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH-HCCCCCCHHHHHHHH
Q 047010 86 VVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY-EHGKIPSRTLYDTLI 146 (153)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~v~p~~~~~~~li 146 (153)
...|..+..+...|..+|..+...-+..-....+. .....+..+. ......+...|.-.|
T Consensus 41 ~~If~~i~~l~~~~~~id~~~v~~~l~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~y~~~i 101 (103)
T PF00772_consen 41 RRIFEAILELYREGEPIDPITVAEELSDEGKLKDI-GGIEYLMELINNAPSIANLEDYAKII 101 (103)
T ss_dssp HHHHHHHHHHHHTTS--SHHHHHHHHHHTTTCCHH-THHHHHHHHHHHSSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCcccc-CHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 33556666666666666666554444333332222 2244444443 333333666555444
No 435
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=23.09 E-value=92 Score=14.01 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=15.3
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 38 ~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l 73 (153)
.+.++...|+..+ .+.-......|+.+.|.+.
T Consensus 4 ~v~~L~~mGf~~~----~a~~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 4 KIDQLLEMGFSRE----EALKALRAANGNVERAAEY 35 (37)
T ss_pred HHHHHHHcCCCHH----HHHHHHHHhCCCHHHHHHH
Confidence 3455566665544 1222223334566666554
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.82 E-value=2.4e+02 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcC
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEH--GKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~--~v~p~~~~~~~li~~~~~~ 152 (153)
+++.+|...|++..+..+++..... |-+.=...|+..|+-+.+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~ 78 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQR 78 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhc
Confidence 8999999999999999999988654 3333344555555555443
No 437
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=22.43 E-value=2.1e+02 Score=20.68 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=19.4
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
|+..+-+.+|-++ -...++..++++.+++.|
T Consensus 205 pgi~~~TgiIVGl--GETeee~~etl~~Lrelg 235 (302)
T TIGR00510 205 PNLPTKSGIMVGL--GETNEEIKQTLKDLRDHG 235 (302)
T ss_pred CCCeecceEEEEC--CCCHHHHHHHHHHHHhcC
Confidence 4455666677777 335666667777776655
No 438
>PRK12356 glutaminase; Reviewed
Probab=22.35 E-value=96 Score=22.69 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=42.4
Q ss_pred CCCccHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC
Q 047010 46 GLKPDVYTYTAVMDGFCKVGRS------NEVMELLNEAIERGVTPN-VVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118 (153)
Q Consensus 46 g~~~~~~t~~~ll~~~~~~g~~------~~a~~l~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 118 (153)
|.+|+-..||++++.=...|.+ ..|..+-..+......+. ....+.++++....+..|..+|.+ -...|
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~S----E~~t~ 168 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGKPLNPLVNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQS----EQTTN 168 (319)
T ss_pred CCCCCCCCcchHHHhhccCCCCCCccccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHHH----HHhhh
Confidence 7788888888887665555544 345555543332221111 222344444444445556665555 22334
Q ss_pred cHHHHHHHHHHHHHCCCC
Q 047010 119 KIDKALLLLFLMYEHGKI 136 (153)
Q Consensus 119 ~~~~a~~~~~~m~~~~v~ 136 (153)
+...|+. ..|++.|.-
T Consensus 169 ~RNrAlA--~~lks~g~i 184 (319)
T PRK12356 169 FHNRAIA--WLLYSYGRL 184 (319)
T ss_pred HHHHHHH--HHHHHCCCC
Confidence 4444433 345566543
No 439
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=22.02 E-value=3.1e+02 Score=19.69 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=58.6
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC
Q 047010 40 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG 118 (153)
Q Consensus 40 ~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 118 (153)
+++...|...+......++...+ ++...+..-++++.... -.-...+.+.+..+... . +..+|. ++++.. .|
T Consensus 141 ~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~-~--~~~if~-l~dai~-~~ 213 (326)
T PRK07452 141 RTAQELGVKLTPEAAELLAEAVG--NDSRRLYNELEKLALYAENSTKPISAEEVKALVSN-T--TQNSLQ-LADALL-QG 213 (326)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc-C--cCcHHH-HHHHHH-CC
Confidence 34455677777777777777665 36666666666654431 11112344455555532 2 345676 888876 58
Q ss_pred cHHHHHHHHHHHHHCCCCCCH
Q 047010 119 KIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 119 ~~~~a~~~~~~m~~~~v~p~~ 139 (153)
+...|..+++.+...|..|-.
T Consensus 214 ~~~~A~~~l~~L~~~g~~p~~ 234 (326)
T PRK07452 214 NTGKALALLDDLLDANEPALR 234 (326)
T ss_pred CHHHHHHHHHHHHHCCCcHHH
Confidence 999999999999998977743
No 440
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=22.00 E-value=2.3e+02 Score=21.06 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=30.0
Q ss_pred hhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 28 TTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 28 ~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
..|..=.|.++.+.+++.|+.+|-.||=-..+-... ++-.|+...+.++..|
T Consensus 278 ~~Yp~erAekf~k~irkLG~~~dG~sylD~FR~LIt--qIGNA~gyVRmirsgg 329 (350)
T PF14744_consen 278 QKYPYERAEKFNKGIRKLGLSDDGQSYLDQFRQLIT--QIGNAMGYVRMIRSGG 329 (350)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH--HHhHHHHHHHHHHHHh
Confidence 334444677777788888887777776443333222 2233666666665544
No 441
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=21.98 E-value=3.4e+02 Score=24.01 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=11.8
Q ss_pred HHHHHHHccCcHHHHHHHHHH
Q 047010 109 NVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~ 129 (153)
-.+.-+|+...|++|.++-..
T Consensus 1031 ~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1031 EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHhhHhHHHHHHHHHHh
Confidence 344555666666666665443
No 442
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=21.83 E-value=2.1e+02 Score=20.64 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 82 (153)
..+.++++.++. .|+..|=+.||-|++. ..++..++++.+.+.|+
T Consensus 198 ~SL~~L~~~k~~--~P~i~TKSgiMlGLGE--t~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 198 RSLSLLERAKEL--GPDIPTKSGLMVGLGE--TDEEVIEVMDDLRSAGV 242 (306)
T ss_pred HHHHHHHHHHHh--CCCcccccceeeecCC--cHHHHHHHHHHHHHcCC
Confidence 778888888776 4889999999988876 46788999999999875
No 443
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=21.75 E-value=3.7e+02 Score=20.54 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----Cc--hHHHHHHHHHHHHcCCCCcHh
Q 047010 35 AYEMLMNVKNDGLKPDV---YTYTAVMDGFCKVGRSNEVMELLNEAIERGV----TP--NVVTLIHLHNVIDIGHIPRTI 105 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~ 105 (153)
-..+++.+.+.|+.|+. .+-.+++.+..-.+..++..+++..+..... .+ ....+..+.+....|...|..
T Consensus 88 hiGVLkaL~E~gl~p~vIsGTSaGAivAal~as~~~eel~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~g~~~d~~ 167 (421)
T cd07230 88 HIGVLKALFEANLLPRIISGSSAGSIVAAILCTHTDEEIPELLEEFPYGDFNVFEDPDQEENVLQKLSRFLKYGSWFDIS 167 (421)
T ss_pred HHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHHHhcchHHHHHHhcccccchHHHHHHHHHhcCCCcCHH
Confidence 35677888899999987 4577888887777888888888877432211 00 012234455666677677777
Q ss_pred hHHHHHHHHHccCcHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALL 125 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~ 125 (153)
.+...+......-.+++|..
T Consensus 168 ~l~~~l~~~lgd~tF~Eay~ 187 (421)
T cd07230 168 HLTRVMRGFLGDLTFQEAYN 187 (421)
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 77777777665556666644
No 444
>PHA00425 DNA packaging protein, small subunit
Probab=21.61 E-value=1.7e+02 Score=16.57 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHH
Q 047010 8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTY 54 (153)
Q Consensus 8 ~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~ 54 (153)
.+.|..++..++.. -+.++..||++.-+-.-....-..++||..+.
T Consensus 15 TE~a~~mL~DL~dd-ekRtPQLYnAIgKlL~RHkF~isKl~pD~~iL 60 (88)
T PHA00425 15 TEMAQRMLADLKDD-EKRTPQLYNAIGKLLDRHKFQISKLQPDENIL 60 (88)
T ss_pred HHHHHHHHHHhcCc-cccChHHHHHHHHHHHHhcccccccCCcHHHH
Confidence 34455555554442 24455555555222111222223345665443
No 445
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=21.49 E-value=1e+02 Score=13.89 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHCCCCCChhh
Q 047010 8 FFEARKVIDYMFDNGYHPNVTT 29 (153)
Q Consensus 8 ~~~a~~~~~~m~~~~~~~~~~~ 29 (153)
.+.|.++...+.+.|-.|+.++
T Consensus 11 ~d~a~rv~~f~~~ngRlPnyV~ 32 (33)
T PF09373_consen 11 LDMASRVNNFYESNGRLPNYVS 32 (33)
T ss_pred HHHHHHHHHHHHHcCCCCCeee
Confidence 4567777777777777777543
No 446
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=21.35 E-value=4.5e+02 Score=21.29 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=48.8
Q ss_pred CCccHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHH----HcCCCCcHhhHHHHHHHHH
Q 047010 47 LKPDVYTYTAVMDGFCK------VGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVI----DIGHIPRTITFNNVIQALC 115 (153)
Q Consensus 47 ~~~~~~t~~~ll~~~~~------~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~li~~~~ 115 (153)
..-|..+|.++++.|.. ....+....+++.+ +.+- ..+...|++..-+. .....+-......+++-.+
T Consensus 16 ~~~D~~s~~t~l~~~~~~~~~~~~~~~~~l~~L~~~L-~~n~~l~~~igWDL~~~l~~~~~~~~~~~~~~~~~~~l~~la 94 (633)
T PF08568_consen 16 PAEDYLSYLTILDIYLEDVNYSNEEKEEFLPELLEIL-QDNQELTYEIGWDLPKLLLPFLPSSEISPCVDCCMKCLEELA 94 (633)
T ss_pred CCcCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-hhCHHHHHHccccCHHHHHHHhhhhhcchHHHHHHHHHHHHH
Confidence 34589999999999887 22222222333333 2210 01111112222222 2222566778889999999
Q ss_pred ccCcHHHHHHHHHHH-HHCCC
Q 047010 116 GVGKIDKALLLLFLM-YEHGK 135 (153)
Q Consensus 116 ~~g~~~~a~~~~~~m-~~~~v 135 (153)
+.|++++.+--+.+. .+...
T Consensus 95 ~~gnPkE~~l~~~E~l~~l~~ 115 (633)
T PF08568_consen 95 RLGNPKELLLKVCELLEELSP 115 (633)
T ss_pred HhCCHHHHHHHHHHHHHhccc
Confidence 999999986655444 44443
No 447
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.28 E-value=2.2e+02 Score=17.80 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=29.3
Q ss_pred hcCCHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH
Q 047010 63 KVGRSNEVMELL-NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL 125 (153)
Q Consensus 63 ~~g~~~~a~~l~-~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 125 (153)
+.|.+++|..-. +-|.-....|...+|++-- .|...+..+-.++.+.|++++++.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~G--------FDA~chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDG--------FDAFCHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHH--------HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhccccc--------HHHHHHHHHHHHHHhhccHHHHHH
Confidence 345565554444 4454445445444332221 244578888999999999987554
No 448
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=21.12 E-value=3.5e+02 Score=22.37 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=25.4
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
.+..+...++.+.|.+++..|....+.|...|+.
T Consensus 123 ~vAl~l~~~~~~~a~~~y~~ls~~~f~paTPtl~ 156 (699)
T PRK07632 123 IVALYLANGDKAKAKQFISAMVEQRYQPATPTFL 156 (699)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCeecCCCccc
Confidence 3444455788999999999999888777766553
No 449
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=20.97 E-value=1.9e+02 Score=23.32 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=31.3
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+| ++|=.|.|+|++++|.++....++ ........|...++.|...
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 45 667778899999999999966543 3455566777777777653
No 450
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=20.97 E-value=2.4e+02 Score=18.02 Aligned_cols=46 Identities=9% Similarity=-0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
...-+|..++...+++|...--.-|--+++.+++-+|-+.+=+|--
T Consensus 42 ~l~PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~LsI 87 (144)
T PF02840_consen 42 YLKPLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLSI 87 (144)
T ss_dssp HHHHHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566788888888888887766666677889999999999988843
No 451
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=20.80 E-value=2.1e+02 Score=17.31 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHH-cCCCchHHHHHHH-HHHHHcCCCCcHhh----HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHH
Q 047010 68 NEVMELLNEAIE-RGVTPNVVTLIHL-HNVIDIGHIPRTIT----FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL 141 (153)
Q Consensus 68 ~~a~~l~~~m~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~ 141 (153)
+++.+.+.++.+ .|+.|.....+++ ..-++.+..|+... =+.-++-..-.|+++.....+-.+.- |...+...
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~~~~~d~g~e~~~~t~~Ge~~~~~~~ll~q~~-g~~~d~~~ 84 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDEDIKDDSGLELNWKTFTGEYDDIYEALLKQRY-GPELDDEE 84 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCCccCCCCCeEEeeeeecCchHHHHHHHHHHHh-CCCCCHHH
Confidence 345666666544 5677743333222 22223333332110 01111122222777766666655544 66667777
Q ss_pred HHHHHHHhhcCC
Q 047010 142 YDTLIKKLDQQP 153 (153)
Q Consensus 142 ~~~li~~~~~~g 153 (153)
+...+++....|
T Consensus 85 l~~~~~~Hl~rG 96 (113)
T PF08870_consen 85 LPKYFKLHLDRG 96 (113)
T ss_pred HHHHHHHHHHHh
Confidence 777766655443
No 452
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.70 E-value=2e+02 Score=16.99 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=13.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCC
Q 047010 62 CKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 62 ~~~g~~~~a~~l~~~m~~~~~ 82 (153)
.+...++.|.++|..+.+.|.
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gl 55 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGR 55 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCC
Confidence 444556666666666666664
No 453
>PF15595 Imm31: Immunity protein 31
Probab=20.63 E-value=1.3e+02 Score=17.97 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=23.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 39 LMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 39 ~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
-..+...|...|-..|.+++.+|.+...++.
T Consensus 27 ~~~~ee~g~egnGY~W~~l~~~~l~~~~p~l 57 (107)
T PF15595_consen 27 DERFEEIGFEGNGYDWEALARVYLRENAPEL 57 (107)
T ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhChhH
Confidence 3444555888899999999999998776554
No 454
>PF14066 DUF4256: Protein of unknown function (DUF4256)
Probab=20.61 E-value=47 Score=21.53 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCCchHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL 89 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~ 89 (153)
-+--+.+|.+.|-+||.+.+
T Consensus 34 kLwsL~eME~TgGEPDVv~~ 53 (173)
T PF14066_consen 34 KLWSLNEMERTGGEPDVVGY 53 (173)
T ss_pred HHHHHHHHHHhCCCCCeeee
Confidence 34445667777777776644
No 455
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=20.45 E-value=1.1e+02 Score=13.93 Aligned_cols=31 Identities=6% Similarity=0.203 Sum_probs=14.9
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHH-HhcCCHHHHHHH
Q 047010 38 MLMNVKNDGLKPDVYTYTAVMDGF-CKVGRSNEVMEL 73 (153)
Q Consensus 38 ~~~~m~~~g~~~~~~t~~~ll~~~-~~~g~~~~a~~l 73 (153)
.+.++...|+.++ ....++ ...|+++.|.+.
T Consensus 5 ~v~~L~~mGf~~~-----~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 5 KVQQLMEMGFSRE-----QAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHTS-HH-----HHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHcCCCHH-----HHHHHHHHcCCCHHHHHHh
Confidence 3445555565444 222332 334477777665
No 456
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=20.41 E-value=1.2e+02 Score=17.85 Aligned_cols=19 Identities=42% Similarity=0.401 Sum_probs=16.0
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~ 79 (153)
..+.|++++|.+++++-.+
T Consensus 25 ~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 25 AAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5889999999999988654
No 457
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=20.40 E-value=2.5e+02 Score=17.93 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~ 85 (153)
+...|.++|-|+...-.+...-.++.+-.+..-.|+
T Consensus 58 ~~A~~~AmliGL~Nr~~ytT~a~~l~Eal~Lp~rP~ 93 (143)
T PF07827_consen 58 QLAWYGAMLIGLHNRTLYTTSARVLPEALSLPSRPS 93 (143)
T ss_dssp HHHHHHHHHHHHHCT---SSCCCHHHHHTTSSS--T
T ss_pred HHHHHHHHHHHHhccceeeccccccHHHhcCCCCCc
Confidence 445678888888887777666667777666554444
No 458
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.37 E-value=1.1e+02 Score=15.11 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=14.6
Q ss_pred HHHHHHHHHCCCCCChhhchH
Q 047010 12 RKVIDYMFDNGYHPNVTTYTI 32 (153)
Q Consensus 12 ~~~~~~m~~~~~~~~~~~~~~ 32 (153)
.++...+.+.|++|.++|-++
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sT 29 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTT 29 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcch
Confidence 356677788888887776543
No 459
>PRK07914 hypothetical protein; Reviewed
Probab=20.27 E-value=3.4e+02 Score=19.55 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=49.6
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCc
Q 047010 41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK 119 (153)
Q Consensus 41 ~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 119 (153)
...+.|...+......++..++ ++......-++++.. .|-. .+.+.+..+....... ..-.++++.+ .|+
T Consensus 140 ~a~~~g~~i~~~A~~~L~~~~g--~dl~~l~~EleKL~~~~~~~---It~e~V~~~v~~~~~~---~vf~L~dAi~-~g~ 210 (320)
T PRK07914 140 EFRSLRVKVDDDTVTALLDAVG--SDLRELASACSQLVADTGGA---VDAAAVRRYHSGKAEV---KGFDIADKAV-AGD 210 (320)
T ss_pred HHHHcCCCCCHHHHHHHHHHHC--ccHHHHHHHHHHHhcCCCCC---cCHHHHHHHcCCCeec---hHHHHHHHHH-CCC
Confidence 4445566666666666666665 355555544555432 1211 2222333333222221 2223455554 788
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 047010 120 IDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 120 ~~~a~~~~~~m~~~~v~p~~ 139 (153)
..+|..+++++...|..|-.
T Consensus 211 ~~~A~~~l~~L~~~ge~p~~ 230 (320)
T PRK07914 211 VAGAAEALRWAMMRGEPHVV 230 (320)
T ss_pred HHHHHHHHHHHHHCCCchHH
Confidence 99999999999888887743
No 460
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=20.21 E-value=1e+02 Score=21.58 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=18.0
Q ss_pred HccCcHHHH-HHHHHHHHHCCCCC
Q 047010 115 CGVGKIDKA-LLLLFLMYEHGKIP 137 (153)
Q Consensus 115 ~~~g~~~~a-~~~~~~m~~~~v~p 137 (153)
+..|++... +...+++.++|+.|
T Consensus 107 ~~~gr~~~~~l~~i~~~l~~gfvP 130 (252)
T COG1608 107 TFNGRILYTYLEAIKDALEKGFVP 130 (252)
T ss_pred ecCCceeechHHHHHHHHHcCCEe
Confidence 567777777 88888888888776
No 461
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=20.14 E-value=6.3e+02 Score=22.55 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=45.9
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHH-cCCC---chHHHHHHHHH--HHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 55 TAVMDGFCKVG-RSNEVMELLNEAIE-RGVT---PNVVTLIHLHN--VIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 55 ~~ll~~~~~~g-~~~~a~~l~~~m~~-~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
...+.++.+.| ..+.|.++|+.|.+ .+.- ..+..|.++.. ..-+-+- ...-|.++++.. .|+.++...++
T Consensus 728 ~~Fi~ga~~~G~~~~~A~~if~~i~~Fa~YgFNKSHA~AYa~iaYqtAyLKahY-P~eF~aAlLs~~--~~~~~k~~~~i 804 (1170)
T PRK07374 728 GIFVEGASKRGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQTAYLKAHY-PVAYMAALLTVN--AGSSDKVQRYI 804 (1170)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHhhcC-HHHHHHHHhhcC--CCCchHHHHHH
Confidence 45677777777 45678888888876 3332 22333322211 1111111 233456666654 37788888899
Q ss_pred HHHHHCCC
Q 047010 128 FLMYEHGK 135 (153)
Q Consensus 128 ~~m~~~~v 135 (153)
.++++.||
T Consensus 805 ~Eak~~GI 812 (1170)
T PRK07374 805 SNCNSMGI 812 (1170)
T ss_pred HHHHHCCC
Confidence 99999886
No 462
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=20.12 E-value=1.2e+02 Score=23.73 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 64 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 64 (153)
.+.++..+-.-....|...||.++|..|++.
T Consensus 543 ~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 543 QGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred HHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 4445554433334569999999999999997
No 463
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.07 E-value=3.7e+02 Score=19.87 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 047010 65 GRSNEVMELLNEAIERGVT 83 (153)
Q Consensus 65 g~~~~a~~l~~~m~~~~~~ 83 (153)
|.++.+.+.++.+++.|+.
T Consensus 138 g~f~~~~~~i~~l~~~g~~ 156 (378)
T PRK05301 138 GAFAKKLAVARLVKAHGYP 156 (378)
T ss_pred chHHHHHHHHHHHHHCCCc
Confidence 5788888888888888754
No 464
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=20.07 E-value=1.9e+02 Score=16.55 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 118 g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~ 150 (153)
...+.+..++..+..+| ...|..+.+++.
T Consensus 48 t~~~k~~~Lld~L~~RG----~~AF~~F~~aL~ 76 (90)
T cd08332 48 TSFSQNVALLNLLPKRG----PRAFSAFCEALR 76 (90)
T ss_pred CcHHHHHHHHHHHHHhC----hhHHHHHHHHHH
Confidence 45666667777666666 445555555553
Done!