Query 047010
Match_columns 153
No_of_seqs 130 out of 1295
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 11:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.7E-36 3E-40 220.3 19.1 151 1-151 35-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.8E-29 2.3E-33 183.6 17.4 145 9-153 7-189 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.4E-24 4.8E-29 168.0 7.0 100 34-151 145-248 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 5E-21 1.7E-25 148.5 9.9 90 49-153 125-214 (1134)
5 2xpi_A Anaphase-promoting comp 99.4 2.6E-11 8.8E-16 90.6 17.5 147 3-153 384-564 (597)
6 2xpi_A Anaphase-promoting comp 99.4 3E-11 1E-15 90.2 17.1 117 34-153 391-530 (597)
7 3mkr_A Coatomer subunit epsilo 98.9 2.7E-07 9.1E-12 63.7 17.6 142 2-153 75-248 (291)
8 1w3b_A UDP-N-acetylglucosamine 98.8 2.7E-06 9.3E-11 60.3 18.8 116 34-153 221-353 (388)
9 2ho1_A Type 4 fimbrial biogene 98.7 3.9E-06 1.3E-10 55.8 16.9 146 3-152 48-222 (252)
10 2vq2_A PILW, putative fimbrial 98.7 5.6E-06 1.9E-10 53.8 17.1 147 2-151 18-194 (225)
11 2fo7_A Synthetic consensus TPR 98.7 2.1E-06 7.3E-11 51.0 13.4 111 2-133 11-132 (136)
12 3uq3_A Heat shock protein STI1 98.7 3.5E-06 1.2E-10 55.9 15.7 147 2-152 15-220 (258)
13 1w3b_A UDP-N-acetylglucosamine 98.7 2.4E-06 8.2E-11 60.6 15.2 144 2-151 213-385 (388)
14 2y4t_A DNAJ homolog subfamily 98.6 2.4E-06 8.1E-11 61.5 15.1 146 2-153 36-225 (450)
15 4eqf_A PEX5-related protein; a 98.6 7.5E-06 2.6E-10 57.5 16.2 146 2-152 75-260 (365)
16 2y4t_A DNAJ homolog subfamily 98.6 7.4E-06 2.5E-10 58.9 16.1 145 2-153 153-343 (450)
17 1fch_A Peroxisomal targeting s 98.5 2E-05 6.8E-10 55.1 17.4 148 2-152 74-264 (368)
18 3as5_A MAMA; tetratricopeptide 98.5 6.3E-06 2.1E-10 51.8 13.1 76 3-80 19-105 (186)
19 2pl2_A Hypothetical conserved 98.5 2.7E-05 9.4E-10 51.1 16.5 144 2-152 15-198 (217)
20 2q7f_A YRRB protein; TPR, prot 98.5 1.4E-05 4.8E-10 52.6 14.7 45 34-79 75-119 (243)
21 3cv0_A Peroxisome targeting si 98.5 7.9E-06 2.7E-10 56.0 13.9 131 2-153 148-300 (327)
22 2q7f_A YRRB protein; TPR, prot 98.5 8.1E-06 2.8E-10 53.7 12.7 130 2-153 67-207 (243)
23 2ho1_A Type 4 fimbrial biogene 98.5 3.2E-05 1.1E-09 51.3 15.6 139 2-145 81-248 (252)
24 2gw1_A Mitochondrial precursor 98.4 2E-05 6.9E-10 57.4 15.7 77 2-81 16-103 (514)
25 4eqf_A PEX5-related protein; a 98.4 6.2E-06 2.1E-10 57.9 12.0 98 34-151 195-293 (365)
26 1fch_A Peroxisomal targeting s 98.4 3E-05 1E-09 54.2 14.6 127 2-149 142-295 (368)
27 1na0_A Designed protein CTPR3; 98.4 2.8E-05 9.7E-10 45.4 12.4 97 34-151 27-123 (125)
28 3cv0_A Peroxisome targeting si 98.3 5E-05 1.7E-09 52.0 15.0 99 34-153 156-254 (327)
29 1xnf_A Lipoprotein NLPI; TPR, 98.3 2.5E-05 8.6E-10 52.3 12.8 110 3-132 16-139 (275)
30 3vtx_A MAMA; tetratricopeptide 98.3 0.00013 4.3E-09 46.2 15.4 128 2-133 15-170 (184)
31 1b89_A Protein (clathrin heavy 98.3 1.3E-06 4.5E-11 63.6 6.2 42 106-153 150-191 (449)
32 3as5_A MAMA; tetratricopeptide 98.3 5.9E-05 2E-09 47.2 13.4 111 2-133 52-173 (186)
33 2fo7_A Synthetic consensus TPR 98.3 8.5E-05 2.9E-09 43.8 13.4 99 34-153 19-117 (136)
34 3hym_B Cell division cycle pro 98.3 4.6E-05 1.6E-09 52.3 13.7 45 34-79 177-221 (330)
35 3hym_B Cell division cycle pro 98.3 0.00025 8.7E-09 48.5 17.4 145 3-152 33-206 (330)
36 3ieg_A DNAJ homolog subfamily 98.2 0.0002 6.8E-09 49.5 16.3 146 2-151 13-200 (359)
37 1b89_A Protein (clathrin heavy 98.2 7.6E-06 2.6E-10 59.6 8.6 29 49-77 120-148 (449)
38 3mkr_A Coatomer subunit epsilo 98.2 5.6E-05 1.9E-09 52.0 12.5 110 2-133 140-264 (291)
39 4gco_A Protein STI-1; structur 98.2 7.6E-05 2.6E-09 44.8 11.6 72 49-141 45-116 (126)
40 3nf1_A KLC 1, kinesin light ch 98.2 3.2E-05 1.1E-09 52.6 10.8 115 2-133 37-182 (311)
41 3fp2_A TPR repeat-containing p 98.2 0.00014 4.8E-09 53.4 14.7 125 3-131 254-405 (537)
42 2ond_A Cleavage stimulation fa 98.1 0.00052 1.8E-08 47.3 16.4 138 9-151 81-253 (308)
43 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.0002 7E-09 46.2 13.4 122 2-134 16-151 (213)
44 2vq2_A PILW, putative fimbrial 98.1 0.00021 7.1E-09 46.2 13.4 140 3-146 53-222 (225)
45 4i17_A Hypothetical protein; T 98.1 0.00016 5.4E-09 47.4 12.7 121 2-138 17-149 (228)
46 3u4t_A TPR repeat-containing p 98.1 0.00031 1.1E-08 46.9 14.4 79 2-81 13-104 (272)
47 3edt_B KLC 2, kinesin light ch 98.1 6.9E-05 2.3E-09 50.1 11.1 114 2-132 53-197 (283)
48 2gw1_A Mitochondrial precursor 98.1 0.00033 1.1E-08 51.0 15.2 143 4-151 201-384 (514)
49 4gyw_A UDP-N-acetylglucosamine 98.1 0.00036 1.2E-08 54.1 15.7 126 2-151 19-157 (723)
50 3uq3_A Heat shock protein STI1 98.0 0.00014 4.9E-09 48.0 11.8 141 2-147 89-254 (258)
51 3vtx_A MAMA; tetratricopeptide 98.0 0.00036 1.2E-08 44.0 13.2 78 2-81 49-137 (184)
52 2vyi_A SGTA protein; chaperone 98.0 0.00033 1.1E-08 41.1 12.3 97 34-151 30-126 (131)
53 3nf1_A KLC 1, kinesin light ch 98.0 6.5E-05 2.2E-09 51.1 10.2 114 2-132 79-223 (311)
54 3ieg_A DNAJ homolog subfamily 98.0 0.0012 4.1E-08 45.5 17.7 76 3-80 131-217 (359)
55 1xnf_A Lipoprotein NLPI; TPR, 98.0 0.00023 8E-09 47.5 12.3 147 2-152 53-228 (275)
56 2lni_A Stress-induced-phosphop 98.0 0.00018 6.2E-09 42.5 10.5 95 34-150 34-129 (133)
57 4abn_A Tetratricopeptide repea 98.0 0.00027 9.1E-09 52.0 12.9 141 2-149 112-302 (474)
58 2kck_A TPR repeat; tetratricop 97.9 0.00063 2.1E-08 38.7 11.3 69 49-134 38-107 (112)
59 2pl2_A Hypothetical conserved 97.9 0.00013 4.6E-09 47.8 9.1 103 6-131 98-212 (217)
60 3gyz_A Chaperone protein IPGC; 97.9 0.00034 1.2E-08 43.5 10.4 85 34-140 54-138 (151)
61 3edt_B KLC 2, kinesin light ch 97.8 0.00026 8.9E-09 47.2 10.3 114 3-133 12-156 (283)
62 3upv_A Heat shock protein STI1 97.8 0.00056 1.9E-08 40.5 10.8 80 49-147 36-119 (126)
63 2e2e_A Formate-dependent nitri 97.8 0.00059 2E-08 42.8 11.3 112 2-134 20-145 (177)
64 1na0_A Designed protein CTPR3; 97.8 0.00069 2.4E-08 39.3 10.9 83 50-152 8-90 (125)
65 2dba_A Smooth muscle cell asso 97.8 0.0014 5E-08 39.3 13.2 92 34-148 46-142 (148)
66 3fp2_A TPR repeat-containing p 97.8 0.00089 3.1E-08 49.1 13.3 78 2-81 286-374 (537)
67 2ond_A Cleavage stimulation fa 97.8 0.00081 2.8E-08 46.3 12.3 127 3-133 110-270 (308)
68 2xcb_A PCRH, regulatory protei 97.8 0.00064 2.2E-08 41.3 10.6 80 34-133 36-115 (142)
69 1elr_A TPR2A-domain of HOP; HO 97.8 0.00079 2.7E-08 39.4 10.4 83 49-147 36-120 (131)
70 2vsy_A XCC0866; transferase, g 97.8 0.0016 5.4E-08 48.7 14.2 73 5-80 2-86 (568)
71 2vgx_A Chaperone SYCD; alterna 97.8 0.00074 2.5E-08 41.6 10.5 80 34-133 39-118 (148)
72 4ga2_A E3 SUMO-protein ligase 97.7 0.00096 3.3E-08 41.1 10.8 128 2-153 7-148 (150)
73 1elw_A TPR1-domain of HOP; HOP 97.7 0.0016 5.3E-08 37.3 12.9 66 50-134 37-102 (118)
74 1ouv_A Conserved hypothetical 97.7 0.0042 1.4E-07 41.7 16.2 133 3-150 17-193 (273)
75 1a17_A Serine/threonine protei 97.7 0.0017 5.9E-08 39.8 11.8 109 2-131 23-144 (166)
76 3sz7_A HSC70 cochaperone (SGT) 97.7 0.001 3.5E-08 41.3 10.8 80 34-133 29-108 (164)
77 2h6f_A Protein farnesyltransfe 97.7 0.0011 3.8E-08 47.5 12.0 75 3-80 108-195 (382)
78 4abn_A Tetratricopeptide repea 97.6 0.0017 5.8E-08 47.7 12.6 125 2-130 147-318 (474)
79 3q49_B STIP1 homology and U bo 97.6 0.0018 6E-08 38.6 10.8 79 34-132 27-105 (137)
80 4gcn_A Protein STI-1; structur 97.6 0.0025 8.5E-08 38.0 11.3 102 3-145 19-122 (127)
81 2ooe_A Cleavage stimulation fa 97.6 0.0091 3.1E-07 44.2 16.5 143 5-151 292-475 (530)
82 1ouv_A Conserved hypothetical 97.6 0.006 2E-07 40.9 15.8 134 5-151 55-230 (273)
83 1hxi_A PEX5, peroxisome target 97.6 0.0011 3.9E-08 39.2 9.4 80 34-133 35-114 (121)
84 3qww_A SET and MYND domain-con 97.6 0.00069 2.4E-08 49.4 9.6 63 52-131 341-409 (433)
85 3urz_A Uncharacterized protein 97.6 0.0013 4.5E-08 42.6 10.0 115 3-147 15-130 (208)
86 3k9i_A BH0479 protein; putativ 97.5 0.00095 3.3E-08 39.1 8.4 82 50-150 26-108 (117)
87 2xev_A YBGF; tetratricopeptide 97.5 0.0032 1.1E-07 37.0 10.7 67 52-134 40-106 (129)
88 4ga2_A E3 SUMO-protein ligase 97.5 0.0013 4.3E-08 40.5 8.8 80 51-151 31-111 (150)
89 2vsy_A XCC0866; transferase, g 97.5 0.0042 1.4E-07 46.4 13.1 112 2-134 33-158 (568)
90 4i17_A Hypothetical protein; T 97.5 0.0047 1.6E-07 40.2 11.9 82 34-134 25-106 (228)
91 2r5s_A Uncharacterized protein 97.4 0.0017 5.9E-08 40.8 9.2 109 3-131 51-171 (176)
92 2lni_A Stress-induced-phosphop 97.4 0.0057 2E-07 35.8 10.9 85 48-152 13-97 (133)
93 4gyw_A UDP-N-acetylglucosamine 97.4 0.0029 9.8E-08 49.1 11.6 108 2-131 53-172 (723)
94 3qou_A Protein YBBN; thioredox 97.4 0.0022 7.7E-08 43.8 10.1 114 34-151 135-267 (287)
95 3n71_A Histone lysine methyltr 97.4 0.0016 5.4E-08 48.3 9.7 64 51-131 351-420 (490)
96 2r5s_A Uncharacterized protein 97.4 0.001 3.5E-08 41.9 7.6 100 50-151 39-156 (176)
97 2h6f_A Protein farnesyltransfe 97.4 0.017 5.8E-07 41.3 14.6 144 3-151 142-321 (382)
98 2kck_A TPR repeat; tetratricop 97.4 0.0048 1.6E-07 34.9 9.8 84 50-152 5-89 (112)
99 3u3w_A Transcriptional activat 97.4 0.012 4.3E-07 40.0 13.3 115 3-131 86-223 (293)
100 3mv2_B Coatomer subunit epsilo 97.3 0.01 3.5E-07 41.4 12.4 119 11-132 85-239 (310)
101 3u4t_A TPR repeat-containing p 97.3 0.0085 2.9E-07 39.8 11.9 98 34-133 21-137 (272)
102 1na3_A Designed protein CTPR2; 97.3 0.0056 1.9E-07 33.4 10.3 82 50-151 8-89 (91)
103 1wao_1 Serine/threonine protei 97.3 0.0062 2.1E-07 44.8 11.9 88 2-133 16-103 (477)
104 2qfc_A PLCR protein; TPR, HTH, 97.3 0.019 6.6E-07 39.0 13.8 115 3-132 86-224 (293)
105 1p5q_A FKBP52, FK506-binding p 97.3 0.011 3.7E-07 41.4 12.3 107 2-130 157-291 (336)
106 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.012 4.1E-07 37.7 11.7 77 34-133 24-100 (213)
107 2fbn_A 70 kDa peptidylprolyl i 97.2 0.0098 3.4E-07 37.9 11.2 75 51-146 88-163 (198)
108 3qky_A Outer membrane assembly 97.2 0.011 3.7E-07 39.4 11.7 127 2-133 25-177 (261)
109 3q49_B STIP1 homology and U bo 97.2 0.011 3.6E-07 35.0 11.6 84 49-152 7-90 (137)
110 3gyz_A Chaperone protein IPGC; 97.2 0.0075 2.6E-07 37.3 10.1 83 50-152 35-117 (151)
111 3ulq_A Response regulator aspa 97.2 0.0066 2.2E-07 42.8 10.9 131 3-133 114-293 (383)
112 3rkv_A Putative peptidylprolyl 97.2 0.014 4.9E-07 35.9 13.0 70 50-140 62-131 (162)
113 2vgx_A Chaperone SYCD; alterna 97.2 0.01 3.4E-07 36.3 10.4 82 50-151 20-101 (148)
114 1elw_A TPR1-domain of HOP; HOP 97.2 0.01 3.4E-07 33.8 10.8 83 50-152 3-85 (118)
115 3qwp_A SET and MYND domain-con 97.2 0.0041 1.4E-07 45.3 9.7 64 51-131 329-398 (429)
116 3sz7_A HSC70 cochaperone (SGT) 97.1 0.013 4.4E-07 36.1 10.8 84 49-152 9-92 (164)
117 3ma5_A Tetratricopeptide repea 97.1 0.0074 2.5E-07 34.2 8.9 81 50-149 6-87 (100)
118 2l6j_A TPR repeat-containing p 97.1 0.011 3.7E-07 33.5 9.7 67 49-134 2-68 (111)
119 2kat_A Uncharacterized protein 97.1 0.012 4.2E-07 33.9 10.8 77 36-132 5-81 (115)
120 2xcb_A PCRH, regulatory protei 97.1 0.015 5.1E-07 35.0 10.4 82 50-151 17-98 (142)
121 2vyi_A SGTA protein; chaperone 97.1 0.014 4.7E-07 33.8 10.9 84 49-152 10-93 (131)
122 2c2l_A CHIP, carboxy terminus 97.1 0.0091 3.1E-07 40.6 10.2 64 50-132 37-100 (281)
123 1p5q_A FKBP52, FK506-binding p 97.1 0.018 6.1E-07 40.3 11.9 96 34-149 165-274 (336)
124 1qqe_A Vesicular transport pro 97.1 0.0074 2.5E-07 41.2 9.8 69 52-134 118-188 (292)
125 3upv_A Heat shock protein STI1 97.1 0.016 5.3E-07 34.0 10.9 82 51-152 4-85 (126)
126 3gw4_A Uncharacterized protein 97.0 0.01 3.4E-07 37.6 9.6 130 2-132 2-175 (203)
127 3qou_A Protein YBBN; thioredox 97.0 0.0072 2.5E-07 41.2 9.1 79 35-131 204-282 (287)
128 3ro3_A PINS homolog, G-protein 96.9 0.0094 3.2E-07 35.8 8.4 117 2-132 19-157 (164)
129 3mv2_B Coatomer subunit epsilo 96.9 0.012 4.2E-07 40.9 9.7 95 35-149 85-184 (310)
130 3u3w_A Transcriptional activat 96.9 0.048 1.6E-06 37.0 13.4 115 3-131 126-264 (293)
131 3gw4_A Uncharacterized protein 96.9 0.017 5.9E-07 36.5 9.9 84 49-132 24-135 (203)
132 2dba_A Smooth muscle cell asso 96.9 0.026 9E-07 33.5 10.7 85 49-150 26-110 (148)
133 1elr_A TPR2A-domain of HOP; HO 96.8 0.016 5.4E-07 33.6 8.8 83 51-152 4-92 (131)
134 4gco_A Protein STI-1; structur 96.8 0.029 9.9E-07 33.2 11.2 81 52-152 14-94 (126)
135 4g1t_A Interferon-induced prot 96.8 0.008 2.7E-07 43.4 8.5 138 2-142 257-469 (472)
136 2pzi_A Probable serine/threoni 96.8 0.0046 1.6E-07 47.5 7.5 45 103-149 533-578 (681)
137 2pzi_A Probable serine/threoni 96.8 0.031 1.1E-06 43.0 11.9 127 4-152 403-547 (681)
138 3q15_A PSP28, response regulat 96.7 0.046 1.6E-06 38.5 11.8 131 3-133 112-290 (378)
139 3q15_A PSP28, response regulat 96.7 0.068 2.3E-06 37.6 12.5 131 2-132 192-364 (378)
140 3n71_A Histone lysine methyltr 96.7 0.0098 3.4E-07 44.1 8.3 67 51-132 393-463 (490)
141 3urz_A Uncharacterized protein 96.7 0.057 2E-06 34.7 12.0 110 34-147 72-198 (208)
142 3ulq_A Response regulator aspa 96.6 0.05 1.7E-06 38.3 11.6 131 2-132 194-367 (383)
143 2yhc_A BAMD, UPF0169 lipoprote 96.6 0.05 1.7E-06 35.4 10.7 77 2-80 14-125 (225)
144 3rjv_A Putative SEL1 repeat pr 96.6 0.069 2.4E-06 34.5 12.1 71 5-81 31-119 (212)
145 4e6h_A MRNA 3'-END-processing 96.6 0.04 1.4E-06 42.5 11.3 127 4-149 446-584 (679)
146 1ihg_A Cyclophilin 40; ppiase 96.6 0.027 9.4E-07 40.0 9.8 66 50-134 272-337 (370)
147 2if4_A ATFKBP42; FKBP-like, al 96.5 0.038 1.3E-06 38.6 10.1 103 2-132 189-292 (338)
148 2e2e_A Formate-dependent nitri 96.5 0.058 2E-06 33.4 10.1 98 34-152 28-128 (177)
149 4a1s_A PINS, partner of inscut 96.5 0.02 6.8E-07 40.5 8.7 112 2-132 58-211 (411)
150 3ro2_A PINS homolog, G-protein 96.5 0.017 5.7E-07 39.1 7.9 30 104-133 303-332 (338)
151 3k9i_A BH0479 protein; putativ 96.4 0.0078 2.7E-07 35.0 5.3 76 4-80 2-90 (117)
152 4f3v_A ESX-1 secretion system 96.4 0.024 8.2E-07 39.0 8.3 122 2-144 112-246 (282)
153 1a17_A Serine/threonine protei 96.4 0.067 2.3E-06 32.4 13.0 81 34-134 31-111 (166)
154 1klx_A Cysteine rich protein B 96.3 0.075 2.6E-06 32.0 11.8 105 5-135 8-128 (138)
155 2qfc_A PLCR protein; TPR, HTH, 96.3 0.13 4.6E-06 34.8 12.1 132 3-148 126-285 (293)
156 4a1s_A PINS, partner of inscut 96.3 0.021 7E-07 40.4 7.7 117 2-132 233-371 (411)
157 2c2l_A CHIP, carboxy terminus 96.3 0.13 4.5E-06 34.8 11.5 83 50-152 3-85 (281)
158 1hxi_A PEX5, peroxisome target 96.3 0.071 2.4E-06 31.2 9.3 77 53-150 19-96 (121)
159 1qqe_A Vesicular transport pro 96.2 0.051 1.8E-06 36.9 9.1 118 2-132 87-227 (292)
160 1kt0_A FKBP51, 51 kDa FK506-bi 96.2 0.074 2.5E-06 38.8 10.4 64 51-133 317-380 (457)
161 3sf4_A G-protein-signaling mod 96.2 0.037 1.3E-06 38.7 8.5 29 104-132 307-335 (406)
162 3ro2_A PINS homolog, G-protein 96.1 0.048 1.6E-06 36.8 8.7 114 2-131 15-170 (338)
163 1hz4_A MALT regulatory protein 95.9 0.076 2.6E-06 37.1 9.0 67 52-132 136-202 (373)
164 4gcn_A Protein STI-1; structur 95.9 0.12 4.2E-06 30.4 9.0 62 52-132 9-70 (127)
165 2ooe_A Cleavage stimulation fa 95.8 0.39 1.3E-05 35.4 15.2 100 50-153 320-439 (530)
166 1xi4_A Clathrin heavy chain; a 95.8 0.48 1.7E-05 39.9 13.9 81 49-129 1132-1220(1630)
167 2ifu_A Gamma-SNAP; membrane fu 95.7 0.1 3.4E-06 35.8 9.0 26 106-131 197-222 (307)
168 3sf4_A G-protein-signaling mod 95.7 0.14 4.8E-06 35.7 9.9 65 51-132 47-115 (406)
169 1xi4_A Clathrin heavy chain; a 95.7 0.21 7.1E-06 42.0 11.7 55 49-130 1193-1247(1630)
170 2xev_A YBGF; tetratricopeptide 95.7 0.14 4.7E-06 29.6 10.2 79 56-152 7-89 (129)
171 3rjv_A Putative SEL1 repeat pr 95.7 0.23 7.9E-06 32.0 11.7 106 7-135 68-199 (212)
172 1kt0_A FKBP51, 51 kDa FK506-bi 95.6 0.2 6.7E-06 36.6 10.6 107 2-130 278-412 (457)
173 1v54_E Cytochrome C oxidase po 95.5 0.072 2.5E-06 30.7 6.1 57 91-148 32-88 (109)
174 2hr2_A Hypothetical protein; a 95.4 0.25 8.5E-06 30.9 10.8 80 51-147 57-150 (159)
175 2yhc_A BAMD, UPF0169 lipoprote 95.4 0.3 1E-05 31.6 12.6 104 5-134 109-214 (225)
176 4g1t_A Interferon-induced prot 95.3 0.53 1.8E-05 33.8 12.9 98 34-135 231-365 (472)
177 2ff4_A Probable regulatory pro 95.2 0.57 1.9E-05 33.5 11.6 72 55-145 175-251 (388)
178 3qky_A Outer membrane assembly 95.1 0.43 1.5E-05 31.5 10.7 83 34-133 33-126 (261)
179 3rkv_A Putative peptidylprolyl 95.0 0.31 1.1E-05 29.6 9.1 93 51-152 11-110 (162)
180 2kc7_A BFR218_protein; tetratr 94.8 0.24 8.1E-06 27.3 9.5 58 58-134 7-65 (99)
181 2y69_E Cytochrome C oxidase su 94.8 0.12 4.2E-06 31.4 5.9 58 90-148 74-131 (152)
182 3ma5_A Tetratricopeptide repea 94.7 0.12 4.1E-06 29.0 5.8 46 34-80 25-70 (100)
183 2xm6_A Protein corresponding t 94.7 0.86 2.9E-05 33.2 15.1 133 5-149 56-229 (490)
184 1hz4_A MALT regulatory protein 94.6 0.72 2.5E-05 32.0 13.9 113 3-132 25-163 (373)
185 1zu2_A Mitochondrial import re 94.4 0.52 1.8E-05 29.4 9.3 81 50-151 35-136 (158)
186 2ifu_A Gamma-SNAP; membrane fu 94.4 0.77 2.6E-05 31.3 11.1 28 105-132 156-183 (307)
187 2l6j_A TPR repeat-containing p 94.3 0.21 7.4E-06 27.8 6.4 32 49-80 36-67 (111)
188 3ro3_A PINS homolog, G-protein 94.3 0.34 1.1E-05 28.7 7.6 67 52-132 50-117 (164)
189 4b4t_Q 26S proteasome regulato 94.2 0.49 1.7E-05 33.5 9.4 118 2-132 65-203 (434)
190 2fbn_A 70 kDa peptidylprolyl i 94.2 0.6 2.1E-05 29.4 10.9 95 51-150 38-133 (198)
191 4e6h_A MRNA 3'-END-processing 94.2 1.2 4.1E-05 34.5 11.7 129 5-134 356-534 (679)
192 1ihg_A Cyclophilin 40; ppiase 93.8 1.1 3.6E-05 31.8 10.3 96 52-152 224-320 (370)
193 1na3_A Designed protein CTPR2; 93.8 0.37 1.3E-05 25.7 8.3 46 34-80 27-72 (91)
194 2kc7_A BFR218_protein; tetratr 93.7 0.26 8.9E-06 27.1 5.8 32 50-81 33-65 (99)
195 3ly7_A Transcriptional activat 93.6 1.4 4.8E-05 31.5 14.1 76 48-145 274-349 (372)
196 1wao_1 Serine/threonine protei 93.0 0.69 2.4E-05 34.0 8.5 73 59-151 14-86 (477)
197 2ff4_A Probable regulatory pro 92.6 0.86 2.9E-05 32.6 8.3 66 34-100 189-259 (388)
198 2xm6_A Protein corresponding t 92.6 2.2 7.5E-05 31.0 17.2 95 34-134 277-397 (490)
199 2kat_A Uncharacterized protein 92.5 0.8 2.7E-05 25.9 8.0 69 10-80 3-82 (115)
200 3e4b_A ALGK; tetratricopeptide 92.5 2.2 7.6E-05 30.9 12.3 128 4-135 15-210 (452)
201 3qww_A SET and MYND domain-con 92.3 0.32 1.1E-05 35.5 5.8 31 49-79 379-410 (433)
202 2if4_A ATFKBP42; FKBP-like, al 92.3 1.2 4.2E-05 30.9 8.6 99 51-152 179-277 (338)
203 3qwp_A SET and MYND domain-con 92.0 0.71 2.4E-05 33.6 7.3 62 56-131 292-356 (429)
204 4b4t_Q 26S proteasome regulato 91.7 2.5 8.6E-05 29.8 13.0 119 3-132 15-163 (434)
205 4f3v_A ESX-1 secretion system 91.6 1.3 4.4E-05 30.4 7.9 86 34-138 120-205 (282)
206 1pc2_A Mitochondria fission pr 90.9 1.8 6.3E-05 26.7 11.7 85 35-139 17-104 (152)
207 1v54_E Cytochrome C oxidase po 90.0 1.7 5.9E-05 25.0 6.3 47 35-81 29-75 (109)
208 3bee_A Putative YFRE protein; 89.9 1.5 5.3E-05 24.3 9.1 67 49-134 4-73 (93)
209 1wy6_A Hypothetical protein ST 89.7 2.3 8E-05 26.1 11.6 113 5-136 20-157 (172)
210 1pc2_A Mitochondria fission pr 89.2 2.7 9.1E-05 26.0 7.5 73 7-80 13-100 (152)
211 2v5f_A Prolyl 4-hydroxylase su 88.6 2.1 7.2E-05 24.0 9.4 76 50-139 4-79 (104)
212 3mkq_A Coatomer beta'-subunit; 88.1 3.9 0.00013 31.5 9.0 77 49-131 679-763 (814)
213 1zu2_A Mitochondrial import re 85.9 4.5 0.00016 25.1 8.2 74 4-80 14-120 (158)
214 2uy1_A Cleavage stimulation fa 85.4 9.2 0.00031 28.2 10.7 29 103-131 383-411 (493)
215 4fhn_B Nucleoporin NUP120; pro 84.7 4.8 0.00017 33.1 8.1 131 2-152 852-984 (1139)
216 2y69_E Cytochrome C oxidase su 84.0 5.3 0.00018 24.3 6.2 48 34-81 71-118 (152)
217 3o48_A Mitochondria fission 1 82.4 3.7 0.00013 24.8 5.0 52 34-87 61-112 (134)
218 3u64_A Protein TP_0956; tetrat 81.6 11 0.00037 26.1 10.8 92 34-145 181-283 (301)
219 1nzn_A CGI-135 protein, fissio 81.4 6.5 0.00022 23.4 6.7 47 34-80 56-103 (126)
220 4gns_B Protein CSD3, chitin bi 80.6 19 0.00066 28.4 11.6 55 58-131 344-398 (754)
221 1k1a_A B-cell lymphoma 3-encod 79.3 1.2 4.2E-05 28.7 2.5 125 3-127 17-170 (241)
222 3bu8_A Telomeric repeat-bindin 79.0 11 0.00039 24.8 10.2 47 34-80 90-143 (235)
223 2hr2_A Hypothetical protein; a 78.5 9.6 0.00033 23.7 9.0 73 52-133 12-86 (159)
224 1klx_A Cysteine rich protein B 77.7 8.5 0.00029 22.6 10.8 75 34-134 13-91 (138)
225 4a1g_A Mitotic checkpoint seri 75.9 11 0.00039 23.2 6.0 54 69-139 83-136 (152)
226 1y8m_A FIS1; mitochondria, unk 75.0 12 0.0004 22.9 6.3 51 34-86 60-110 (144)
227 3e4b_A ALGK; tetratricopeptide 74.4 22 0.00074 25.7 15.6 85 50-134 175-281 (452)
228 4b4t_R RPN7, 26S proteasome re 73.2 8.4 0.00029 27.9 5.6 64 52-131 132-195 (429)
229 2wvi_A Mitotic checkpoint seri 72.7 15 0.00051 23.0 6.3 73 48-140 60-132 (164)
230 2uy1_A Cleavage stimulation fa 72.1 27 0.00092 25.7 12.6 123 4-130 225-380 (493)
231 3dra_A Protein farnesyltransfe 71.6 22 0.00075 24.5 15.8 124 6-132 124-286 (306)
232 3ly7_A Transcriptional activat 71.6 25 0.00085 25.2 9.7 43 101-145 274-316 (372)
233 2nsz_A Programmed cell death p 69.5 15 0.00051 21.8 8.4 26 53-78 9-34 (129)
234 4aez_C MAD3, mitotic spindle c 68.2 12 0.0004 24.7 5.0 35 105-139 151-185 (223)
235 4ets_A Ferric uptake regulatio 67.2 11 0.00037 23.4 4.5 44 109-152 37-82 (162)
236 2ion_A PDCD4, programmed cell 67.1 19 0.00065 22.1 8.4 27 52-78 10-36 (152)
237 1zbp_A Hypothetical protein VP 66.5 28 0.00095 23.8 6.7 71 59-148 5-77 (273)
238 2v5f_A Prolyl 4-hydroxylase su 66.5 14 0.00049 20.4 6.3 32 49-80 44-75 (104)
239 4ets_A Ferric uptake regulatio 65.6 21 0.00072 22.0 5.6 60 40-100 22-84 (162)
240 3esl_A Checkpoint serine/threo 65.5 25 0.00085 22.8 8.9 75 48-139 74-150 (202)
241 3lpz_A GET4 (YOR164C homolog); 64.7 34 0.0012 24.1 8.3 66 51-116 35-106 (336)
242 3mkq_B Coatomer subunit alpha; 64.3 24 0.00083 22.3 10.2 29 50-78 33-61 (177)
243 2xig_A Ferric uptake regulatio 63.8 22 0.00075 21.6 6.6 45 109-153 31-75 (150)
244 2fe3_A Peroxide operon regulat 63.6 21 0.00073 21.4 6.4 45 109-153 26-70 (145)
245 2dod_A Transcription elongatio 63.5 9.4 0.00032 20.8 3.3 32 119-151 15-47 (82)
246 2o03_A Probable zinc uptake re 63.4 11 0.00036 22.3 3.8 45 109-153 15-59 (131)
247 3mwm_A ZUR, putative metal upt 63.2 9.8 0.00034 22.8 3.7 46 108-153 17-62 (139)
248 2uwj_G Type III export protein 63.0 19 0.00066 20.7 5.8 83 34-143 24-106 (115)
249 3mkq_B Coatomer subunit alpha; 62.3 27 0.00092 22.1 6.2 50 59-132 13-62 (177)
250 2p58_C Putative type III secre 62.0 20 0.0007 20.6 6.7 83 34-143 25-107 (116)
251 3bee_A Putative YFRE protein; 61.0 18 0.00062 19.8 6.5 47 34-81 27-73 (93)
252 3aji_A 26S proteasome non-ATPa 59.2 8.9 0.0003 24.4 3.2 14 4-17 15-28 (231)
253 2b7e_A PRE-mRNA processing pro 58.8 7.3 0.00025 19.9 2.1 29 120-149 2-31 (59)
254 3mwm_A ZUR, putative metal upt 57.3 21 0.00073 21.3 4.5 58 43-101 6-64 (139)
255 3bqo_A Telomeric repeat-bindin 57.3 23 0.0008 23.0 4.7 26 55-80 121-146 (211)
256 2o03_A Probable zinc uptake re 56.6 23 0.00077 20.9 4.5 46 55-100 14-60 (131)
257 1uzc_A Hypothetical protein FL 56.4 13 0.00043 19.7 2.9 32 119-151 13-45 (71)
258 1mzb_A Ferric uptake regulatio 55.7 14 0.00047 22.0 3.4 45 109-153 22-67 (136)
259 3mkq_A Coatomer beta'-subunit; 55.2 63 0.0022 24.8 7.8 50 58-131 659-708 (814)
260 1wy6_A Hypothetical protein ST 55.1 30 0.001 21.4 4.6 38 46-83 120-157 (172)
261 1wdy_A 2-5A-dependent ribonucl 52.9 10 0.00035 24.8 2.8 90 34-128 50-169 (285)
262 1oai_A Nuclear RNA export fact 52.6 17 0.0006 18.3 3.0 22 64-85 33-55 (59)
263 2w57_A Ferric uptake regulatio 52.5 18 0.00063 21.9 3.6 45 109-153 21-66 (150)
264 4gns_B Protein CSD3, chitin bi 52.5 27 0.00094 27.5 5.3 43 34-77 355-397 (754)
265 2yru_A Steroid receptor RNA ac 51.2 35 0.0012 20.0 5.3 47 34-80 44-90 (118)
266 2w57_A Ferric uptake regulatio 51.1 38 0.0013 20.4 6.7 61 40-101 6-68 (150)
267 2wpv_A GET4, UPF0363 protein Y 51.1 59 0.002 22.6 8.8 27 51-77 33-59 (312)
268 4b4t_R RPN7, 26S proteasome re 51.0 67 0.0023 23.2 12.3 83 34-132 149-236 (429)
269 3esl_A Checkpoint serine/threo 50.9 48 0.0016 21.5 8.1 56 34-89 97-153 (202)
270 1mzb_A Ferric uptake regulatio 50.0 38 0.0013 20.0 6.6 59 41-100 8-68 (136)
271 3eiq_C Programmed cell death p 49.9 66 0.0023 22.8 8.0 27 52-78 218-244 (358)
272 4a1g_A Mitotic checkpoint seri 49.7 43 0.0015 20.6 8.3 57 34-90 83-140 (152)
273 1nzn_A CGI-135 protein, fissio 49.1 40 0.0014 20.0 9.3 67 49-133 33-103 (126)
274 3u64_A Protein TP_0956; tetrat 48.6 65 0.0022 22.3 7.7 75 7-83 178-272 (301)
275 4gpm_A Engineered protein OR26 45.7 18 0.00061 22.2 2.9 73 4-85 13-97 (169)
276 2of3_A ZYG-9; multifunctional 44.7 71 0.0024 21.6 6.3 16 105-120 226-241 (266)
277 2keb_A DNA polymerase subunit 44.2 28 0.00095 19.8 3.1 25 90-114 30-54 (101)
278 2fu4_A Ferric uptake regulatio 43.9 35 0.0012 17.9 5.6 45 109-153 21-66 (83)
279 3eyy_A Putative iron uptake re 43.9 51 0.0017 19.8 4.8 42 110-152 24-65 (145)
280 2bn5_A PSI; nuclear protein, s 43.6 22 0.00076 15.6 2.2 23 57-79 8-30 (33)
281 2wvi_A Mitotic checkpoint seri 43.1 59 0.002 20.3 8.2 56 34-89 78-134 (164)
282 1k1a_A B-cell lymphoma 3-encod 42.6 35 0.0012 21.6 4.1 23 58-84 50-72 (241)
283 2ko4_A Mediator of RNA polymer 41.1 30 0.001 18.7 2.8 33 46-78 31-63 (81)
284 1dce_A Protein (RAB geranylger 40.1 1.2E+02 0.004 22.9 12.8 31 118-149 206-236 (567)
285 2zu6_B Programmed cell death p 40.0 91 0.0031 21.6 7.9 26 53-78 168-193 (307)
286 1zl8_A LIN-7; heterodimer, alp 39.7 24 0.00082 17.3 2.1 23 65-87 7-29 (53)
287 3twr_A Tankyrase-2; ankyrin re 39.6 43 0.0015 19.8 4.0 15 36-50 55-69 (165)
288 3v30_A DNA-binding protein rfx 39.4 20 0.00067 21.5 2.3 92 35-131 48-159 (172)
289 2dzn_A Probable 26S proteasome 38.6 59 0.002 20.3 4.7 43 4-46 11-59 (228)
290 3l6a_A Eukaryotic translation 37.8 1.1E+02 0.0037 21.8 8.3 27 52-78 13-39 (364)
291 4aez_C MAD3, mitotic spindle c 37.6 87 0.003 20.6 7.9 56 34-89 132-188 (223)
292 3ygs_P Procaspase 9; apoptosis 37.0 55 0.0019 18.2 6.2 65 38-126 26-90 (97)
293 3kae_A CDC27, possible protein 36.2 86 0.0029 20.2 6.5 69 60-130 71-140 (242)
294 1sxj_D Activator 1 41 kDa subu 35.0 1.1E+02 0.0036 20.9 7.2 98 34-140 196-300 (353)
295 3eu9_A Huntingtin-interacting 34.9 34 0.0012 21.5 3.0 20 109-128 179-198 (240)
296 3f3f_C Nucleoporin NUP85; stru 34.7 1.2E+02 0.0041 23.1 6.1 68 36-123 501-568 (570)
297 2cos_A Serine/threonine protei 33.4 48 0.0016 16.4 3.5 34 39-77 13-48 (54)
298 2fe3_A Peroxide operon regulat 32.7 80 0.0027 18.8 6.8 60 40-100 11-71 (145)
299 1ug3_A EIF4GI, eukaryotic prot 31.5 97 0.0033 21.6 5.0 26 53-78 13-38 (339)
300 3dra_A Protein farnesyltransfe 31.0 1.3E+02 0.0044 20.6 15.7 45 103-148 179-229 (306)
301 1dce_A Protein (RAB geranylger 30.9 1.7E+02 0.0058 22.0 14.6 91 35-146 92-185 (567)
302 3f6q_A Integrin-linked protein 30.6 28 0.00097 21.0 2.0 16 36-51 52-67 (179)
303 3pvs_A Replication-associated 30.3 1.6E+02 0.0054 21.5 10.9 113 34-149 169-300 (447)
304 3c1d_A Protein ORAA, regulator 29.8 97 0.0033 18.9 11.2 49 35-85 49-97 (159)
305 3v31_A Ankyrin repeat family A 29.7 89 0.003 18.3 4.6 39 35-73 48-88 (167)
306 3kea_A K1L; tropism, ANK repea 29.5 20 0.00069 23.9 1.3 40 90-129 143-183 (285)
307 1ixm_A SPO0B, protein (sporula 29.5 1.1E+02 0.0038 19.4 6.6 27 53-79 34-60 (192)
308 2ijq_A Hypothetical protein; s 29.3 1E+02 0.0036 19.1 8.3 62 54-132 36-103 (161)
309 2d2s_A Exocyst complex compone 28.7 1.3E+02 0.0044 19.9 8.6 72 57-131 24-118 (235)
310 2jp7_A MRNA export factor MEX6 28.1 24 0.00082 17.7 1.1 22 64-86 32-53 (57)
311 3qye_A TBC1 domain family memb 27.4 1.5E+02 0.0052 20.3 6.6 47 37-83 209-255 (331)
312 3m0z_A Putative aldolase; MCSG 27.3 38 0.0013 22.6 2.1 82 34-132 149-246 (249)
313 2y7e_A 3-keto-5-aminohexanoate 27.2 90 0.0031 21.4 4.1 42 6-48 127-168 (282)
314 3m6y_A 4-hydroxy-2-oxoglutarat 26.6 37 0.0013 22.9 2.0 82 34-132 172-269 (275)
315 1wgl_A TOLL-interacting protei 26.3 70 0.0024 16.1 3.8 32 105-138 26-57 (59)
316 3q7a_A Farnesyltransferase alp 26.3 1.7E+02 0.0059 20.6 16.1 123 7-132 140-330 (349)
317 2xai_A ASB-9, ankyrin repeat a 25.8 78 0.0027 20.5 3.7 15 36-50 49-63 (261)
318 4h7y_A Dual specificity protei 25.1 1.3E+02 0.0044 18.7 12.1 118 6-147 11-136 (161)
319 2wl8_A Peroxisomal biogenesis 24.3 63 0.0021 19.2 2.6 21 66-86 90-110 (126)
320 2xig_A Ferric uptake regulatio 24.3 1.2E+02 0.0042 18.2 7.5 61 40-101 16-77 (150)
321 2ve8_A FTSK, DNA translocase F 23.8 91 0.0031 16.5 3.9 28 108-136 27-54 (73)
322 2qq8_A TBC1 domain family memb 23.6 92 0.0032 21.6 3.8 45 37-81 214-258 (334)
323 2rfa_A Transient receptor pote 23.5 1.4E+02 0.0048 18.6 5.3 87 36-132 134-222 (232)
324 3ljn_A Hypothetical protein; a 23.4 1.4E+02 0.0046 20.4 4.6 48 90-137 67-114 (364)
325 3utm_A Tankyrase-1; tankyrase, 23.3 1E+02 0.0036 20.6 4.0 17 111-127 128-144 (351)
326 2p1h_A APAF-1, apoptotic prote 23.3 99 0.0034 16.7 6.3 30 117-150 49-78 (94)
327 3cqc_A Nuclear pore complex pr 23.3 65 0.0022 21.8 2.8 25 53-77 36-60 (270)
328 2i2x_B MTAC, methyltransferase 23.2 74 0.0025 21.2 3.1 68 72-149 14-81 (258)
329 3j20_Q 30S ribosomal protein S 23.1 1.4E+02 0.0049 18.5 4.8 22 66-87 29-50 (158)
330 3rjo_A Endoplasmic reticulum a 23.0 2.1E+02 0.0072 20.4 11.8 82 52-135 198-298 (419)
331 2p22_A Suppressor protein STP2 22.9 1.5E+02 0.0051 18.7 5.0 49 102-151 109-157 (174)
332 1b79_A DNAB helicase; hexamer, 22.7 1.2E+02 0.0041 17.4 6.4 56 88-146 58-116 (119)
333 2eo2_A Adult MALE hypothalamus 22.6 26 0.0009 18.4 0.6 46 63-108 23-71 (71)
334 3q7a_A Farnesyltransferase alp 22.6 2.1E+02 0.007 20.2 14.4 139 6-149 68-252 (349)
335 2e2a_A Protein (enzyme IIA); h 22.5 65 0.0022 18.4 2.3 19 61-79 30-48 (105)
336 1wcr_A PTS system, N, N'-diace 22.4 66 0.0023 18.3 2.3 19 61-79 28-46 (103)
337 2chq_A Replication factor C sm 22.1 1.8E+02 0.0061 19.3 11.6 96 34-138 165-262 (319)
338 3a54_A Protein-glutaminase; mu 21.9 1.7E+02 0.0059 19.9 4.5 52 34-85 95-175 (305)
339 3hra_A Ankyrin repeat family p 21.5 1.4E+02 0.0049 17.9 5.7 103 34-138 50-172 (201)
340 4b4t_P 26S proteasome regulato 21.0 2.4E+02 0.0083 20.4 8.0 78 54-131 140-245 (445)
341 1x60_A Sporulation-specific N- 21.0 87 0.003 16.2 2.6 18 7-24 19-36 (79)
342 3pvs_A Replication-associated 20.9 2.5E+02 0.0084 20.4 6.5 61 62-122 266-329 (447)
343 1uta_A FTSN, MSGA, cell divisi 20.9 86 0.0029 16.4 2.6 17 8-24 20-36 (81)
344 1n0r_A 4ANK, 4 ankyrin repeats 20.3 1.2E+02 0.004 16.4 3.7 12 37-48 49-60 (126)
345 3b7b_A Euchromatic histone-lys 20.2 63 0.0021 20.3 2.3 37 90-126 158-196 (237)
346 3bqs_A Uncharacterized protein 20.1 1.3E+02 0.0043 16.7 4.2 28 122-149 35-62 (93)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.7e-36 Score=220.34 Aligned_cols=151 Identities=14% Similarity=0.218 Sum_probs=145.8
Q ss_pred CccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------------HHHHHHHHHHHcCCCccHHHHHHHHHH
Q 047010 1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------EAYEMLMNVKNDGLKPDVYTYTAVMDG 60 (153)
Q Consensus 1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------------~a~~~~~~m~~~g~~~~~~t~~~ll~~ 60 (153)
+|++.|++++|..+|++|.+.|++||..|||.| .|.++|++|...|+.||..|||+||.+
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999988 578999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 123 (153)
|++.|++++|+++|++|.+.|+.||..+| .++.+|.+.|+.||..||+++|.+|++.|++++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 99999999999999999999999999998 6778899999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 124 LLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 124 ~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
.++|++|++.|+.|+..||+.++..|+.
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.8e-29 Score=183.58 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHCCCCCChh-hchH-H----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---------H
Q 047010 9 FEARKVIDYMFDNGYHPNVT-TYTI-L----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR---------S 67 (153)
Q Consensus 9 ~~a~~~~~~m~~~~~~~~~~-~~~~-l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~---------~ 67 (153)
..+..+.+.+++++..+.+. .++. | +|+++|++|.+.|++||.+|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 45677778888887765543 3333 3 999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 68 NEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
++|.++|++|.+.|+.||..+| .++.+|.+.|+.||.+|||++|.+||+.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999998 67788999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCC
Q 047010 131 YEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 131 ~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.+.|+.||..||++||++|++.|
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g 189 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTK 189 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCCHHHHHHHHHHHhhCC
Confidence 99999999999999999999986
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=168.03 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=87.9
Q ss_pred HHHHHHHHHH---HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHH
Q 047010 34 EAYEMLMNVK---NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110 (153)
Q Consensus 34 ~a~~~~~~m~---~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (153)
+|.++|.+|. ..|+.||.+|||+||+|||+.|++++|.++|++|.+.|+.||.. |||++
T Consensus 145 eA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv------------------TYntL 206 (1134)
T 3spa_A 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL------------------SYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH------------------HHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH------------------HHHHH
Confidence 5666665554 45789999999999999999999999999999999999877655 99999
Q ss_pred HHHHHccCc-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 111 IQALCGVGK-IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 111 i~~~~~~g~-~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
|+++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 999999997 58899999999999999999999977766654
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=148.48 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=79.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
--..|||++|++||+.|++++|.++|++|.+. ...|..||++|||+||++||+.|++++|.++|+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m---------------~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ---------------RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS---------------HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------hhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34579999999999999999999999998642 122334567799999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 129 LMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 129 ~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+|++.|+.||..||++||+++|+.|
T Consensus 190 eM~~~G~~PDvvTYntLI~glcK~G 214 (1134)
T 3spa_A 190 MVKDAGLTPDLLSYAAALQCMGRQD 214 (1134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCcHHHHHHHHHHHHhCC
Confidence 9999999999999999999999865
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.42 E-value=2.6e-11 Score=90.58 Aligned_cols=147 Identities=12% Similarity=-0.005 Sum_probs=72.1
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
.+.|++++|..+|+.+.+.. +.+..+|+.+ +|.++|+++.+.+ +.+..+|+.+..+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555554421 1223344433 4555555554432 224455555555555555555555
Q ss_pred HHHHHHHHcCCCchHHHH-----------------HHHHHHHHc----CCCCc--HhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 72 ELLNEAIERGVTPNVVTL-----------------IHLHNVIDI----GHIPR--TITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 72 ~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
++|+++.+.. +.+..++ ..+..+.+. +..|+ ..+|..+..+|.+.|++++|..+|+
T Consensus 462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555554432 1122222 222223222 44554 4566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 129 LMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 129 ~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
++.+.+ ..+..+|..+..+|.+.|
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhC
Confidence 655443 235556666666555543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.40 E-value=3e-11 Score=90.23 Aligned_cols=117 Identities=8% Similarity=-0.028 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVI 96 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~ 96 (153)
+|.+.|+++.+.. +.+..+|+.+..+|.+.|++++|.++|+++.+.+- .+..++ ..+..+.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666665532 23566777777777777777777777777766432 222222 2333333
Q ss_pred HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhhcCC
Q 047010 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH----GKIPS--RTLYDTLIKKLDQQP 153 (153)
Q Consensus 97 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~v~p~--~~~~~~li~~~~~~g 153 (153)
+.. ..+..+|+.+...|.+.|++++|..+|+++.+. +..|+ ..+|..+..+|.+.|
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 322 236778888888888888888888888888654 66777 678888888887765
No 7
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.94 E-value=2.7e-07 Score=63.75 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=104.3
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
+.+.++.++|...++.+...+..|+...+... +|++.+++ +.+...+..+...|.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 45678899999999999987766665444322 66666655 4678899999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHH--------------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL--------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
|.+.|+++.+.. |+.... ..+.++.+. ...+...|+.+..++.+.|++++|...|++
T Consensus 149 A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 149 ARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998874 443211 222333333 345778899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
..+.. +-+..++..+...+...|
T Consensus 226 al~~~-p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 226 ALDKD-SGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcC
Confidence 87654 235667777776655443
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=2.7e-06 Score=60.28 Aligned_cols=116 Identities=14% Similarity=0.035 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVI 96 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~ 96 (153)
++...+.+..... +.+..+|..+..+|.+.|++++|.+.|+++.+..-. +..++ ..+..+.
T Consensus 221 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444331 124667777777888888888888888877765321 11222 1222222
Q ss_pred HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 97 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+. ...+..+|+.+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|
T Consensus 299 ~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 299 RL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTT
T ss_pred hh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 22 23456677777777777777777777777776532 234566666666666544
No 9
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.72 E-value=3.9e-06 Score=55.77 Aligned_cols=146 Identities=10% Similarity=-0.017 Sum_probs=89.9
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
...|++++|...|+.+.+.. +.+...+..+ +|.+.+++..+.. +.+...|..+...|.+.|++++|.
T Consensus 48 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 125 (252)
T 2ho1_A 48 LQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAY 125 (252)
T ss_dssp HHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHH
Confidence 45678888888888877653 2233344333 6777777766553 235677777888888888888888
Q ss_pred HHHHHHHHcCCCchHH-HH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 72 ELLNEAIERGVTPNVV-TL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 72 ~l~~~m~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
++|++..+.+..|+.. .+ ..+....... ..+...+..+...+...|++++|...++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888877643444332 22 1222222221 224567777777888888888888888877654
Q ss_pred CCCCCHHHHHHHHHHhhcC
Q 047010 134 GKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 134 ~v~p~~~~~~~li~~~~~~ 152 (153)
. ..+...+..+...+.+.
T Consensus 205 ~-~~~~~~~~~~~~~~~~~ 222 (252)
T 2ho1_A 205 G-GQNARSLLLGIRLAKVF 222 (252)
T ss_dssp S-CCCHHHHHHHHHHHHHT
T ss_pred C-cCcHHHHHHHHHHHHHc
Confidence 3 23455555555555443
No 10
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.70 E-value=5.6e-06 Score=53.76 Aligned_cols=147 Identities=12% Similarity=0.055 Sum_probs=101.3
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-GRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~-g~~~~ 69 (153)
|.+.|++++|...|....+.. +.+...+..+ +|...+++..+.. +.+...|..+...|... |++++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHH
Confidence 456799999999999988853 2334444444 7888888877653 34678899999999999 99999
Q ss_pred HHHHHHHHHHcCCCchHH-HH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVV-TL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
|.+.+++..+.+..|+.. .+ ..+....... ..+...+..+...+.+.|++++|...+++..
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998844444332 22 2222222221 2346778888888999999999999998887
Q ss_pred HCCCCCCHHHHHHHHHHhhc
Q 047010 132 EHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 132 ~~~v~p~~~~~~~li~~~~~ 151 (153)
+..-..+...+..+...+.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~ 194 (225)
T 2vq2_A 175 SRVEVLQADDLLLGWKIAKA 194 (225)
T ss_dssp HHHCSCCHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHh
Confidence 64321355556555554443
No 11
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.68 E-value=2.1e-06 Score=50.99 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=83.9
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|..++..+.+.. +.+...+..+ .|...+.+..... +.+...|..+...+.+.|++++|
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 88 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEA 88 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHH
Confidence 346789999999999988754 2234444433 7777787777654 34567888888999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.++++++.+.. | .+..++..+...+.+.|++++|...++++.+.
T Consensus 89 ~~~~~~~~~~~--~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 89 IEYYQKALELD--P-----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--C-----------------CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999887653 2 12347788888999999999999999988664
No 12
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.5e-06 Score=55.86 Aligned_cols=147 Identities=13% Similarity=0.118 Sum_probs=92.4
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCC--cc----HHHHHHHHHHHHhc
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK--PD----VYTYTAVMDGFCKV 64 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~--~~----~~t~~~ll~~~~~~ 64 (153)
+.+.|++++|...|+...+.. .+...|..+ .|...+.+..+.... ++ ...|..+-..|.+.
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 456789999999999998876 666666554 777777776654211 12 57889999999999
Q ss_pred CCHHHHHHHHHHHHHcCC------------------------CchHHHH------------------HHHHHHHHcCCCC
Q 047010 65 GRSNEVMELLNEAIERGV------------------------TPNVVTL------------------IHLHNVIDIGHIP 102 (153)
Q Consensus 65 g~~~~a~~l~~~m~~~~~------------------------~~~~~~~------------------~~~~~~~~~~~~~ 102 (153)
|++++|.+.|++..+..- .|+.... ..+....... ..
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 171 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE 171 (258)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cc
Confidence 999999999999887431 2221111 1122222211 22
Q ss_pred cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+..+|..+...+.+.|++++|...|+...+.. ..+...+..+-..+.+.
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 220 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777665543 22345555555554443
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=2.4e-06 Score=60.58 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=96.7
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
+...|++++|...|....+.. |+ ..++..+ +|...++++..... .+..+|..+...+.+.|++++
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 345678888888888877653 43 4444443 77888888776532 245678888888888888888
Q ss_pred HHHHHHHHHHcCCCchHHHHHHH-------------HHHHH--cCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 70 VMELLNEAIERGVTPNVVTLIHL-------------HNVID--IGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~~~~-------------~~~~~--~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
|.+.|+++.+.. +.+..++..+ ....+ ....| +..++..+...+.+.|++++|...|+++.+.
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888887653 3333333111 11111 12223 5678999999999999999999999999874
Q ss_pred CCCC-CHHHHHHHHHHhhc
Q 047010 134 GKIP-SRTLYDTLIKKLDQ 151 (153)
Q Consensus 134 ~v~p-~~~~~~~li~~~~~ 151 (153)
.| +...|..+-..+.+
T Consensus 369 --~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 369 --SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp --CTTCHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHhHHHHHHH
Confidence 34 45566555555443
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.64 E-value=2.4e-06 Score=61.54 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=108.4
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|..+|+.+.+.. +.+...|..+ +|...++++.+.. +.+...|..+..+|.+.|++++|
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 457899999999999998753 3345555544 8889998888764 34678999999999999999999
Q ss_pred HHHHHHHHHcCCCchHH----HH-----------------------------HHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010 71 MELLNEAIERGVTPNVV----TL-----------------------------IHLHNVIDIGHIPRTITFNNVIQALCGV 117 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~----~~-----------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~ 117 (153)
.+.|+++.+.. |+.. .+ ..+..+... ...+..++..+...|.+.
T Consensus 114 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 114 EDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHC
Confidence 99999998754 3322 11 122222221 234677889999999999
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 118 g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
|++++|...|+++.+.. ..+..++..+...+.+.|
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 99999999999887643 346778888888877654
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.60 E-value=7.5e-06 Score=57.48 Aligned_cols=146 Identities=10% Similarity=0.034 Sum_probs=95.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
+.+.|++++|..+|+.+.+.. +.+...|..+ .|...+++..+.. +.+...|..+...|.+.|++++|
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHH
Confidence 356789999999999998864 3345555544 7888888877763 34578899999999999999999
Q ss_pred HHHHHHHHHcCCCchHH------------------HH----------HHHHHHHHcCCC-CcHhhHHHHHHHHHccCcHH
Q 047010 71 MELLNEAIERGVTPNVV------------------TL----------IHLHNVIDIGHI-PRTITFNNVIQALCGVGKID 121 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~------------------~~----------~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 121 (153)
.+.|++..+.. |+.. .+ ..+......... ++..+|..+...+.+.|+++
T Consensus 153 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 153 CEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence 99999987642 2110 00 223333332211 24566677777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 122 ~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+|...|++..+.. ..+..+|..+-..|.+.
T Consensus 231 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 231 RAIDAFNAALTVR-PEDYSLWNRLGATLANG 260 (365)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 7777777665532 22455666666555544
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.58 E-value=7.4e-06 Score=58.92 Aligned_cols=145 Identities=8% Similarity=0.047 Sum_probs=92.5
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...|+.+.+.. +.+...+..+ +|.+.++++.+.. +.+..+|..+...|.+.|++++|
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 345688888888888887753 2344444444 6677777766542 34677888888888888888888
Q ss_pred HHHHHHHHHcCCCchHHH-H-----------------------------HHHHHHHHcCCCCc-----HhhHHHHHHHHH
Q 047010 71 MELLNEAIERGVTPNVVT-L-----------------------------IHLHNVIDIGHIPR-----TITFNNVIQALC 115 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~-~-----------------------------~~~~~~~~~~~~~~-----~~~~~~li~~~~ 115 (153)
.+.|+++.+.. |+... + ..+..+.. ..|+ ...|..+...+.
T Consensus 231 ~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 231 LSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHH
Confidence 88888887543 22111 1 12222222 2233 346777778888
Q ss_pred ccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 116 ~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+.|++++|...++.+.+.. ..+...|..+..+|.+.|
T Consensus 307 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 8888888888888776542 235677777777666543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.55 E-value=2e-05 Score=55.12 Aligned_cols=148 Identities=11% Similarity=0.024 Sum_probs=97.8
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...|+.+.+.. +.+...|..+ .|...+++..+.. +.+..+|..+...|.+.|++++|
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 456799999999999999864 3344455444 7888888877764 34778899999999999999999
Q ss_pred HHHHHHHHHcCCCchHH-------------------------------HHHHHHHHHHcCCC-CcHhhHHHHHHHHHccC
Q 047010 71 MELLNEAIERGVTPNVV-------------------------------TLIHLHNVIDIGHI-PRTITFNNVIQALCGVG 118 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 118 (153)
.+.|+++.+..-..... ....+..+...... ++..++..+...+.+.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 99999987753211000 00222333322221 14667777777777778
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 119 ~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
++++|...|++..+.. ..+...+..+...+.+.
T Consensus 232 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANG 264 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHc
Confidence 8888887777776542 22455666666555543
No 18
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.53 E-value=6.3e-06 Score=51.75 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=53.1
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
...|++++|...++.+.+.. +.+...+..+ .|...+++..+.. +.+...|..+...+...|++++|.
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 96 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAV 96 (186)
T ss_dssp HHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 45678888888888776542 2233444333 7777777766652 346677888888888888888888
Q ss_pred HHHHHHHHc
Q 047010 72 ELLNEAIER 80 (153)
Q Consensus 72 ~l~~~m~~~ 80 (153)
+.+++..+.
T Consensus 97 ~~~~~~~~~ 105 (186)
T 3as5_A 97 PLLIKVAEA 105 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888887765
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.52 E-value=2.7e-05 Score=51.11 Aligned_cols=144 Identities=12% Similarity=0.116 Sum_probs=102.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc------
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV------ 64 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~------ 64 (153)
+.+.|++++|...|+...+.. +.+...+..+ +|...+++..+.. +.+...|..+-..+.+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhh
Confidence 456789999999999988753 2334444433 7788888777663 23567888888889999
Q ss_pred -----CCHHHHHHHHHHHHHcCCCch-HHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHH
Q 047010 65 -----GRSNEVMELLNEAIERGVTPN-VVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKID 121 (153)
Q Consensus 65 -----g~~~~a~~l~~~m~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 121 (153)
|++++|.+.|++..+.. |+ ...+ ..+.+..+.. .+...+..+-..+...|+++
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHH
T ss_pred hcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHH
Confidence 99999999999987753 32 2222 3444444444 67788889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 122 ~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+|...|++..+.. +-+...+..+-..+.+.
T Consensus 169 ~A~~~~~~al~~~-P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 169 EALAQYAKALEQA-PKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 9999999987653 22456666666665544
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.50 E-value=1.4e-05 Score=52.59 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.|...+++..... +.+...|..+...|.+.|++++|.+.+++..+
T Consensus 75 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 75 RALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444332 12344444445555555555555555555444
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.49 E-value=7.9e-06 Score=56.05 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=97.4
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
+...|++++|...++.+.+.. +.+...+..+ .|...+++..+.. +.+...|..+...+.+.|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 556788899999999988764 2244444444 7788888777653 34578899999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-----------CH
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-----------SR 139 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p-----------~~ 139 (153)
.+.|++..+.. |+ +..+|..+...+.+.|++++|...|++..+..-.. +.
T Consensus 226 ~~~~~~a~~~~--~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 226 LDAYNRALDIN--PG-----------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHcC--CC-----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 99999987643 21 34588899999999999999999999886543221 36
Q ss_pred HHHHHHHHHhhcCC
Q 047010 140 TLYDTLIKKLDQQP 153 (153)
Q Consensus 140 ~~~~~li~~~~~~g 153 (153)
..+..+...+.+.|
T Consensus 287 ~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 287 SMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC
Confidence 67777777766554
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.46 E-value=8.1e-06 Score=53.75 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=98.8
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...++...+.. +.+...+..+ .|...+++..+.. +.+...|..+...+.+.|++++|
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 456789999999999988763 2234444433 7888888877764 34677899999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~ 150 (153)
.+.+++..+.. | .+...+..+...+.+.|++++|...|++..+.. ..+..++..+...+.
T Consensus 145 ~~~~~~~~~~~--~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 145 LPYLQRAVELN--E-----------------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYA 204 (243)
T ss_dssp HHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--C-----------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 99999987653 2 134588899999999999999999999987653 235667777777776
Q ss_pred cCC
Q 047010 151 QQP 153 (153)
Q Consensus 151 ~~g 153 (153)
+.|
T Consensus 205 ~~~ 207 (243)
T 2q7f_A 205 YKE 207 (243)
T ss_dssp HTT
T ss_pred Hcc
Confidence 544
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.45 E-value=3.2e-05 Score=51.28 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=97.5
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~ 69 (153)
|.+.|++++|...++.+.+.. +.+...+..+ +|.+.+++....+..| +...|..+...|.+.|++++
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 456789999999999988764 2244444443 7888888887743344 56778889999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|.+.|++..+..-. +...+ ..+..... ....+...+..+...+.+.|++++|...++.+.+
T Consensus 160 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 160 AKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQ-GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998776422 22222 22222222 2234667888999999999999999999999977
Q ss_pred CCCCCCHHHHHHH
Q 047010 133 HGKIPSRTLYDTL 145 (153)
Q Consensus 133 ~~v~p~~~~~~~l 145 (153)
.. |+...+..+
T Consensus 238 ~~--p~~~~~~~~ 248 (252)
T 2ho1_A 238 LY--PGSLEYQEF 248 (252)
T ss_dssp HC--TTSHHHHHH
T ss_pred HC--CCCHHHHHH
Confidence 53 554444433
No 24
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.44 E-value=2e-05 Score=57.42 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=65.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
+.+.|++++|...|..+.+.. |+...|..+ .|...+++..+.. +.+...|..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 456899999999999999975 787777665 8888888887764 34668899999999999999999
Q ss_pred HHHHHHHHHcC
Q 047010 71 MELLNEAIERG 81 (153)
Q Consensus 71 ~~l~~~m~~~~ 81 (153)
.+.|+++.+.+
T Consensus 93 ~~~~~~~~~~~ 103 (514)
T 2gw1_A 93 MFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhcC
Confidence 99999987654
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.42 E-value=6.2e-06 Score=57.91 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~-~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
+|...+++..+.... ++..+|..+-..|.+.|++++|.+.|++..+.. | .+..+|..+..
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-----------------~~~~~~~~l~~ 255 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--P-----------------EDYSLWNRLGA 255 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-----------------CCHHHHHHHHH
Confidence 566666666555322 156677777777777777777777777766542 2 13446777777
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
.|.+.|++++|...|++..+.. ..+...+..+-..|.+
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 7777777777777777766542 1235555555555544
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.37 E-value=3e-05 Score=54.20 Aligned_cols=127 Identities=13% Similarity=0.044 Sum_probs=76.1
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhch-------------------HH-------HHHHHHHHHHHcCCCc-cHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-------------------IL-------EAYEMLMNVKNDGLKP-DVYTY 54 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------------~l-------~a~~~~~~m~~~g~~~-~~~t~ 54 (153)
|...|++++|...+..+.+..- .+...+. .+ +|...+++........ +..+|
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 3456778888888887777531 1111211 01 6677777776654322 57888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
..+...|.+.|++++|.+.|++..+.. |+ +..+|..+...+.+.|++++|...|++..+..
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~--~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR--PN-----------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888889999999999999998887653 21 22355555555666666666666665554432
Q ss_pred CCCCHHHHHHHHHHh
Q 047010 135 KIPSRTLYDTLIKKL 149 (153)
Q Consensus 135 v~p~~~~~~~li~~~ 149 (153)
..+...+..+-..+
T Consensus 282 -~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 282 -PGYIRSRYNLGISC 295 (368)
T ss_dssp -TTCHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHH
Confidence 12334444444443
No 27
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=2.8e-05 Score=45.43 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|.+.+.+..... +.+...|..+...+.+.|++++|..+|+++.+.. | .+..++..+...
T Consensus 27 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-----------------~~~~~~~~la~~ 86 (125)
T 1na0_A 27 EAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-----------------NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--C-----------------ccHHHHHHHHHH
Confidence 4455555544432 2356788888999999999999999999987653 2 234578889999
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
+...|++++|...|+++.+.. ..+...+..+-..+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999987653 2234455555444433
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.35 E-value=5e-05 Score=52.00 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...+++..+.. +.+...+..+...|.+.|++++|.+.+++..+.. | .+..+|..+...
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-----------------~~~~~~~~l~~~ 215 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--P-----------------DDAQLWNKLGAT 215 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-----------------CcHHHHHHHHHH
Confidence 6666677666553 2367788888888888888888888888877642 2 234588999999
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+...|++++|...|++..+.. ..+...+..+...+.+.|
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999987653 235677777777766544
No 29
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.32 E-value=2.5e-05 Score=52.31 Aligned_cols=110 Identities=11% Similarity=-0.050 Sum_probs=74.6
Q ss_pred cccCChHHHHHHHHHHHHCCCCC---ChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHP---NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 68 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~ 68 (153)
...|++++|...|+.+.+..... +...|..+ +|...+++..... +.+...|..+-..|.+.|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 35688999999999998863211 22333333 7888888877763 236788999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
+|.+.|++..+.. |+ +..+|..+...|.+.|++++|...|+++.+
T Consensus 95 ~A~~~~~~al~~~--~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 95 AAYEAFDSVLELD--PT-----------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHC--TT-----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cc-----------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999988753 21 223455555555555555555555555544
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.32 E-value=0.00013 Score=46.19 Aligned_cols=128 Identities=18% Similarity=0.129 Sum_probs=69.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...|+...+.. +-+...|..+ .+...+....... +.+...+..+-..+...++++.|
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a 92 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAA 92 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHH
Confidence 345688889999988888753 2223333333 4555555544432 22344555555556666666666
Q ss_pred HHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 71 MELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.+.+.+..+..-. +...+ ..+....+. ...+..+|..+-..|.+.|++++|...|++..+.
T Consensus 93 ~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 93 IDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 6666655443211 11111 111111111 1124456777777777888888888888777653
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.30 E-value=1.3e-06 Score=63.58 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=26.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.|..+.+++.+.|++++|.+.++++ .+..+|..++.+|...|
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcC
Confidence 5666666666666666666666665 24566666666665543
No 32
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.30 E-value=5.9e-05 Score=47.17 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=87.7
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...++...+.. +.+...+..+ .|...+++..+.. +.+...|..+...+.+.|++++|
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHH
Confidence 456799999999999998863 2334444433 7788888877663 34678899999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.+.+++..+.. | .+...+..+...+...|++++|...++...+.
T Consensus 130 ~~~~~~~~~~~--~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 130 IDSFKIALGLR--P-----------------NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--c-----------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999987753 2 13458889999999999999999999988653
No 33
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.29 E-value=8.5e-05 Score=43.79 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...+.++.+.. +.+...|..+...+...|++++|.++++++.+.+ | .+...+..+...
T Consensus 19 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-----------------~~~~~~~~l~~~ 78 (136)
T 2fo7_A 19 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-----------------RSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--C-----------------CchHHHHHHHHH
Confidence 6777777776653 3467788889999999999999999999987653 2 233478888999
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
+...|++++|...++++.+.. ..+...+..+...+.+.|
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 117 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHc
Confidence 999999999999999987754 235667777777766544
No 34
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.29 E-value=4.6e-05 Score=52.26 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.|...+++..+.. +.+...|..+...+.+.|++++|.+.+++..+
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444444444332 22344555555555555555555555555544
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.29 E-value=0.00025 Score=48.49 Aligned_cols=145 Identities=9% Similarity=-0.033 Sum_probs=93.4
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG-RSNEV 70 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g-~~~~a 70 (153)
...|++++|..+|+.+.+..- .+...+..+ ++...+.++.+.. +.+...|..+-..+...| ++++|
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A 110 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHA 110 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHH
Confidence 456899999999999887641 222222111 7777887777653 235677888888899999 89999
Q ss_pred HHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 71 MELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.+.|++..+..-. +...+ ..+....... ..+...+..+...+...|++++|...+++..+.
T Consensus 111 ~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 111 RRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999988765422 11222 2222222222 123456666888888888888888888888764
Q ss_pred CCCCCHHHHHHHHHHhhcC
Q 047010 134 GKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 134 ~v~p~~~~~~~li~~~~~~ 152 (153)
. ..+...+..+...+.+.
T Consensus 189 ~-~~~~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 189 A-PEDPFVMHEVGVVAFQN 206 (330)
T ss_dssp C-TTCHHHHHHHHHHHHHT
T ss_pred C-CCChHHHHHHHHHHHHc
Confidence 3 23456666666665544
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.24 E-value=0.0002 Score=49.50 Aligned_cols=146 Identities=11% Similarity=0.004 Sum_probs=94.8
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
+.+.|++++|...|+...+.. +.+...+..+ .|...+++..+.. +.+...|..+-..|.+.|++++|
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHH
Confidence 456789999999999988753 2334444433 7788888777653 23567888899999999999999
Q ss_pred HHHHHHHHHcCCC--chHHHH-----------------------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCc
Q 047010 71 MELLNEAIERGVT--PNVVTL-----------------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGK 119 (153)
Q Consensus 71 ~~l~~~m~~~~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 119 (153)
.+.|++..+..-. .+...+ ..+...... ...+...+..+...+...|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 91 EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHCCC
Confidence 9999988765320 111111 111112211 22355677788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 120 ~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
+++|...+++..+.. ..+...+..+-..+.+
T Consensus 170 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 170 PRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 888888888876643 3355566655555543
No 37
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.21 E-value=7.6e-06 Score=59.63 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEA 77 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m 77 (153)
|+..+|+.+-+.|...|.+++|..+|..+
T Consensus 120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp C----------------CTTTHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 44455555555555555555555555543
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.20 E-value=5.6e-05 Score=52.05 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=79.5
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhh------chHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTT------YTIL--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 67 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~l--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~ 67 (153)
|.+.|++++|...|+.+.+.. |+... |..+ +|..+|+++... .+.+...|+.+-.++.+.|++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCH
Confidence 346688888888888887763 54321 1111 677778777776 345777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH-HHHHHHHHHHC
Q 047010 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK-ALLLLFLMYEH 133 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 133 (153)
++|++.|++..+.. |+ +..++..++..+...|+.++ +.++++++.+.
T Consensus 217 ~eA~~~l~~al~~~--p~-----------------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 217 EAAEGVLQEALDKD--SG-----------------HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 88888888876642 22 34588889999999999876 67898888764
No 39
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.19 E-value=7.6e-05 Score=44.83 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+...|..+-.+|.+.|++++|.+.|++..+.. |+ +...|..+-.++...|++++|...|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 45 ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SK-----------------FIKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hh-----------------hhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 467889999999999999999999999987753 22 34588899999999999999999999
Q ss_pred HHHHCCCCCCHHH
Q 047010 129 LMYEHGKIPSRTL 141 (153)
Q Consensus 129 ~m~~~~v~p~~~~ 141 (153)
+..+. .|+...
T Consensus 106 ~al~l--~P~~~~ 116 (126)
T 4gco_A 106 DALQV--DPSNEE 116 (126)
T ss_dssp HHHHH--CTTCHH
T ss_pred HHHHH--CcCCHH
Confidence 98774 354433
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.17 E-value=3.2e-05 Score=52.61 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=83.0
Q ss_pred ccccCChHHHHHHHHHHHHC-------CCCCChhhchHH-----------HHHHHHHHHHHc------C-CCccHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDN-------GYHPNVTTYTIL-----------EAYEMLMNVKND------G-LKPDVYTYTA 56 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l-----------~a~~~~~~m~~~------g-~~~~~~t~~~ 56 (153)
|...|++++|..++..+.+. ..+.....+..+ +|...+.+.... + .......|..
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45679999999999998873 112222333333 666666655433 2 2234578899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIER------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
+-..|...|++++|.+.|++..+. +-.|+ ....+..+...+...|++++|..+|++.
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-----------------VAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999998764 22222 2357888999999999999999999988
Q ss_pred HHC
Q 047010 131 YEH 133 (153)
Q Consensus 131 ~~~ 133 (153)
.+.
T Consensus 180 ~~~ 182 (311)
T 3nf1_A 180 LEI 182 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 41
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.16 E-value=0.00014 Score=53.37 Aligned_cols=125 Identities=13% Similarity=0.075 Sum_probs=80.1
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
...|++++|...|....+. .|+...|..+ .|...+.+..... +.+..+|..+-..|.+.|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 4568889999999999886 4555555544 8888888877664 236778999999999999999999
Q ss_pred HHHHHHHHcCCC-chHHHH---------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 72 ELLNEAIERGVT-PNVVTL---------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 72 ~l~~~m~~~~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
+.|++..+..-. +..... ..+...... ...+...|..+...+...|++++|...|+...
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998775421 111100 111112211 11233455556666666666666666666554
No 42
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.14 E-value=0.00052 Score=47.29 Aligned_cols=138 Identities=9% Similarity=-0.002 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCcc-H-HHHHHHHHHHHhcCCHHHHHHHH
Q 047010 9 FEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPD-V-YTYTAVMDGFCKVGRSNEVMELL 74 (153)
Q Consensus 9 ~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~-~-~t~~~ll~~~~~~g~~~~a~~l~ 74 (153)
++|..+|+...+. +.|+ ...|..+ .|.++|++..+. .|+ . ..|..+...+.+.|++++|.++|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8899999998873 2344 3355444 778888888774 343 3 38999999999999999999999
Q ss_pred HHHHHcCCCchHHHH------------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-C
Q 047010 75 NEAIERGVTPNVVTL------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-K 135 (153)
Q Consensus 75 ~~m~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-v 135 (153)
++..+..- ++...+ .++....+. ..-+...|..++..+.+.|++++|..+|++..+.. +
T Consensus 158 ~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 99877532 222222 111111111 12256788999999999999999999999998863 4
Q ss_pred CC--CHHHHHHHHHHhhc
Q 047010 136 IP--SRTLYDTLIKKLDQ 151 (153)
Q Consensus 136 ~p--~~~~~~~li~~~~~ 151 (153)
.| ....|..++....+
T Consensus 236 ~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESN 253 (308)
T ss_dssp CGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 55 35566666555443
No 43
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.12 E-value=0.0002 Score=46.19 Aligned_cols=122 Identities=15% Similarity=0.052 Sum_probs=86.4
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
+.+.|++++|...|... +.|+...|..+ +|...+++..... +.+...|..+-.+|.+.|++++|
T Consensus 16 ~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence 34678999999999876 35666666555 7788888777653 34678899999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcC--CCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIG--HIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
.+.|++..+..-...... ....+ ..| +...+..+-..+.+.|++++|...|+...+..
T Consensus 91 ~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLID------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHTTTTCSEEE------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCccHHH------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999877431100000 00000 001 22578888999999999999999999987754
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.12 E-value=0.00021 Score=46.16 Aligned_cols=140 Identities=8% Similarity=-0.063 Sum_probs=83.2
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~ 69 (153)
...|++++|...++...+.. +.+...+..+ +|...+++..+.+..| +...|..+...+.+.|++++
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 45677777777777776643 1223333222 5666666666532223 34667777777777777777
Q ss_pred HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|.+.|++..+..-. +...+ ..+..........+...+..+...+...|+.+.|..+++.+.+
T Consensus 132 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 132 AEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777776654321 12222 2222222222214566788888888999999999999999875
Q ss_pred CCCCCCHHHHHHHH
Q 047010 133 HGKIPSRTLYDTLI 146 (153)
Q Consensus 133 ~~v~p~~~~~~~li 146 (153)
. .|+......++
T Consensus 211 ~--~p~~~~~~~~l 222 (225)
T 2vq2_A 211 N--FPYSEELQTVL 222 (225)
T ss_dssp H--CTTCHHHHHHH
T ss_pred h--CCCCHHHHHHh
Confidence 4 36555544443
No 45
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.10 E-value=0.00016 Score=47.41 Aligned_cols=121 Identities=15% Similarity=0.055 Sum_probs=88.1
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...|....+..-+++...+..+ +|...+++...... .+...|..+-..|.+.|++++|
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A 95 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEY 95 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHHH
Confidence 34679999999999999887533555555434 78888888776532 2567888999999999999999
Q ss_pred HHHHHHHHHcCCCchHHH-HHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 71 MELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
.+.|++..+.. |+... ...+ ...|..+-..+...|++++|...|++..+. .|+
T Consensus 96 ~~~~~~al~~~--p~~~~~~~~~-----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 96 IATLTEGIKAV--PGNATIEKLY-----------AIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred HHHHHHHHHHC--CCcHHHHHHH-----------HHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 99999987753 22110 0000 025777778888999999999999998764 465
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.10 E-value=0.00031 Score=46.93 Aligned_cols=79 Identities=13% Similarity=0.084 Sum_probs=59.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSN 68 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~ 68 (153)
+.+.|++++|...|....+.. +.+...+..+ +|...+++.......+ ....|..+-..|.+.|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 457899999999999998864 2223344433 8888888887743222 2345889999999999999
Q ss_pred HHHHHHHHHHHcC
Q 047010 69 EVMELLNEAIERG 81 (153)
Q Consensus 69 ~a~~l~~~m~~~~ 81 (153)
+|.+.|++..+..
T Consensus 92 ~A~~~~~~a~~~~ 104 (272)
T 3u4t_A 92 LAIQQYQAAVDRD 104 (272)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988753
No 47
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.10 E-value=6.9e-05 Score=50.09 Aligned_cols=114 Identities=21% Similarity=0.158 Sum_probs=82.2
Q ss_pred ccccCChHHHHHHHHHHHHC------CCCCC-hhhchHH-----------HHHHHHHHHHHc------C-CCccHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDN------GYHPN-VTTYTIL-----------EAYEMLMNVKND------G-LKPDVYTYTA 56 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~------~~~~~-~~~~~~l-----------~a~~~~~~m~~~------g-~~~~~~t~~~ 56 (153)
|...|++++|...+....+. +-.|. ...+..+ +|.+.+.+.... . .+.....|..
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 132 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN 132 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 45678999999999988874 21222 2233333 666666655433 1 1234678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIER------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
+-..|...|++++|.+.|++..+. +-.|+ ...++..+...|...|++++|...+++.
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN-----------------VAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH-----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999998764 11222 2357889999999999999999999888
Q ss_pred HH
Q 047010 131 YE 132 (153)
Q Consensus 131 ~~ 132 (153)
.+
T Consensus 196 l~ 197 (283)
T 3edt_B 196 LT 197 (283)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 48
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.08 E-value=0.00033 Score=50.97 Aligned_cols=143 Identities=9% Similarity=0.007 Sum_probs=84.4
Q ss_pred ccCChHHHHHHHHHHHH-----CCCCCCh--------hhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFD-----NGYHPNV--------TTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD 59 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~-----~~~~~~~--------~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~ 59 (153)
+.|++++|..+|+.+.+ ..-.|+. ..+..+ .|...+++..+.... ...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHH
Confidence 47888888888888877 3112221 222222 777777777666433 777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH
Q 047010 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK 122 (153)
Q Consensus 60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (153)
.|.+.|++++|.+.+++..+..-. +...+ ..+....... ..+...+..+...+...|++++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877664321 11122 2222222221 2245567777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 123 a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
|...++.+.+.. ..+...+..+-..+.+
T Consensus 357 A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 357 CETLFSEAKRKF-PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-ccCHHHHHHHHHHHHH
Confidence 777777776532 1233455555544443
No 49
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.07 E-value=0.00036 Score=54.12 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=94.9
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
|.+.|++++|...|+...+. .|+ ...|..+ +|.+.+++..+.. +-+...|..+-.+|.+.|++++
T Consensus 19 ~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 45679999999999999885 354 3445444 8888888777653 2356889999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKK 148 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~ 148 (153)
|++.|++..+. .|+ +...|+.+-..|...|++++|...|++..+.. | +...+..+...
T Consensus 96 A~~~~~kAl~l--~P~-----------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 96 ALQCYTRAIQI--NPA-----------------FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhH
Confidence 99999998764 232 34578888889999999999999999887643 4 35566666655
Q ss_pred hhc
Q 047010 149 LDQ 151 (153)
Q Consensus 149 ~~~ 151 (153)
+.+
T Consensus 155 l~~ 157 (723)
T 4gyw_A 155 LQI 157 (723)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 50
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00014 Score=47.97 Aligned_cols=141 Identities=12% Similarity=0.021 Sum_probs=89.5
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH----HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m 77 (153)
|.+.|++++|...|....+. .|+...+..+ .+...+.+..... +.+...|..+-..+.+.|++++|.+.|++.
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTE--HRTADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--CchhHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45678999999999998885 3555555444 5566666655542 224456677777777777777777777777
Q ss_pred HHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC----CCC
Q 047010 78 IERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH----GKI 136 (153)
Q Consensus 78 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~v~ 136 (153)
.+..-. +...+ ..+...... ...+...|..+...+.+.|++++|...+++..+. +..
T Consensus 166 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 243 (258)
T 3uq3_A 166 IKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243 (258)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCC
Confidence 654321 22222 122222221 1234678999999999999999999999988643 233
Q ss_pred CCHHHHHHHHH
Q 047010 137 PSRTLYDTLIK 147 (153)
Q Consensus 137 p~~~~~~~li~ 147 (153)
|+.......+.
T Consensus 244 p~~~~~~~~l~ 254 (258)
T 3uq3_A 244 SSAREIDQLYY 254 (258)
T ss_dssp TTHHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 66555444443
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.04 E-value=0.00036 Score=44.04 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=52.9
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...+........ -+...+..+ .+...+.+..... +.+...+..+-..|.+.|++++|
T Consensus 49 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A 126 (184)
T 3vtx_A 49 YMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKA 126 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhH
Confidence 4467888999998888877532 122222222 5566666555542 33567788888888899999999
Q ss_pred HHHHHHHHHcC
Q 047010 71 MELLNEAIERG 81 (153)
Q Consensus 71 ~~l~~~m~~~~ 81 (153)
.+.|++..+..
T Consensus 127 ~~~~~~~l~~~ 137 (184)
T 3vtx_A 127 IEAYEKTISIK 137 (184)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99998887753
No 52
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.04 E-value=0.00033 Score=41.08 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|...+++..... +.+...|..+-..+...|++++|.+.+++..+.. |+ +...|..+...
T Consensus 30 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~~~~ 89 (131)
T 2vyi_A 30 AAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PA-----------------YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--cc-----------------CHHHHHHHHHH
Confidence 4444444444332 2366788888889999999999999999887652 22 34478888889
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
+.+.|++++|...|++..+.. ..+...+..+...+.+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHH
Confidence 999999999999999987653 1245555555555543
No 53
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.04 E-value=6.5e-05 Score=51.06 Aligned_cols=114 Identities=21% Similarity=0.177 Sum_probs=82.5
Q ss_pred ccccCChHHHHHHHHHHHHC------CCCCC-hhhchHH-----------HHHHHHHHHHHc------CCCc-cHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDN------GYHPN-VTTYTIL-----------EAYEMLMNVKND------GLKP-DVYTYTA 56 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~------~~~~~-~~~~~~l-----------~a~~~~~~m~~~------g~~~-~~~t~~~ 56 (153)
|...|++++|...+....+. +-.|. ...+..+ +|...+++..+. +-.| ....|..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 45678999999999988774 21222 2233333 666677665543 2223 4577889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIER------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
+-..|.+.|++++|.++|++..+. +..|+ ...++..+...|...|++++|...+++.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN-----------------VAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH-----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999998764 22222 2357889999999999999999999988
Q ss_pred HH
Q 047010 131 YE 132 (153)
Q Consensus 131 ~~ 132 (153)
.+
T Consensus 222 l~ 223 (311)
T 3nf1_A 222 LT 223 (311)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 54
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.03 E-value=0.0012 Score=45.54 Aligned_cols=76 Identities=9% Similarity=0.116 Sum_probs=46.4
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
...|++++|...++.+.+.. +.+...+..+ .|...+++..... +.+...|..+...|.+.|++++|.
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34577777777777776643 2233333333 5666666665542 335566777777777777777777
Q ss_pred HHHHHHHHc
Q 047010 72 ELLNEAIER 80 (153)
Q Consensus 72 ~l~~~m~~~ 80 (153)
+.|++..+.
T Consensus 209 ~~~~~a~~~ 217 (359)
T 3ieg_A 209 SEVRECLKL 217 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777766554
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.00 E-value=0.00023 Score=47.51 Aligned_cols=147 Identities=13% Similarity=-0.047 Sum_probs=92.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|...|++++|...|+...+.. +.+...|..+ +|...+++..... +.+...|..+-..|.+.|++++|
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHH
Confidence 456799999999999998864 2345555554 8888888887753 23578899999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHH---------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010 71 MELLNEAIERGVTPNVVTL---------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
.+.|++..+..-....... ..+...... ..++...+. +...+...++.++|...+....+...
T Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 131 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 9999999875422111110 112122221 122333333 56666667777777777776654321
Q ss_pred C--C-CHHHHHHHHHHhhcC
Q 047010 136 I--P-SRTLYDTLIKKLDQQ 152 (153)
Q Consensus 136 ~--p-~~~~~~~li~~~~~~ 152 (153)
. | +...+..+-..+.+.
T Consensus 209 ~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHc
Confidence 1 1 134555555555443
No 56
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.99 E-value=0.00018 Score=42.53 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|...+++..... +.+...|..+-..|...|++++|.+.+++..+.. |+ +...|..+...
T Consensus 34 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------~~~~~~~la~~ 93 (133)
T 2lni_A 34 QAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PT-----------------FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC-----------------chHHHHHHHHH
Confidence 4455555544432 2367788888889999999999999999887753 21 34578888889
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhh
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLD 150 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~~~ 150 (153)
+.+.|++++|...|++..+.. | +...+..+-..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 999999999999999887643 3 2344444444443
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.97 E-value=0.00027 Score=51.95 Aligned_cols=141 Identities=9% Similarity=-0.101 Sum_probs=97.6
Q ss_pred ccccCCh-HHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----
Q 047010 2 YCNKNDF-FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV----- 64 (153)
Q Consensus 2 ~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~----- 64 (153)
|...|++ ++|...|+...+.. +-+...|..+ +|.+.+++..+.. |+...|..+-..|.+.
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~ 188 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSG 188 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCH
T ss_pred HHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCCh
Confidence 4567899 99999999998863 2234555554 8888888887764 6678899999999999
Q ss_pred ----CCHHHHHHHHHHHHHcCCCchHHHH----HH---------------------HHHHHHcCCCC----cHhhHHHHH
Q 047010 65 ----GRSNEVMELLNEAIERGVTPNVVTL----IH---------------------LHNVIDIGHIP----RTITFNNVI 111 (153)
Q Consensus 65 ----g~~~~a~~l~~~m~~~~~~~~~~~~----~~---------------------~~~~~~~~~~~----~~~~~~~li 111 (153)
|++++|.+.|++..+..-. +...+ .+ +..... ..| +...|..+-
T Consensus 189 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 189 DEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--VDRKASSNPDLHLNRA 265 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHH
Confidence 9999999999998875421 22222 11 111111 134 667888888
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
..|...|++++|...|++..+.. .-+...+..+-..+
T Consensus 266 ~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999999999887643 12334444444433
No 58
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.89 E-value=0.00063 Score=38.73 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc-CcHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV-GKIDKALLLL 127 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~ 127 (153)
.+...|..+-..+.+.|++++|.+.|++..+.. |+ ..+...|..+...+.+. |++++|...+
T Consensus 38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~---------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 38 EESKYWLMKGKALYNLERYEEAVDCYNYVINVI--ED---------------EYNKDVWAAKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CC---------------TTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cc---------------cchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 356778888889999999999999999988753 21 01345888899999999 9999999999
Q ss_pred HHHHHCC
Q 047010 128 FLMYEHG 134 (153)
Q Consensus 128 ~~m~~~~ 134 (153)
+...+..
T Consensus 101 ~~~~~~~ 107 (112)
T 2kck_A 101 ARAKLEH 107 (112)
T ss_dssp HHHGGGC
T ss_pred HHHhhcc
Confidence 9987654
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.88 E-value=0.00013 Score=47.77 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010 6 NDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l 73 (153)
|++++|...|+...+. .|+ ...|..+ +|...+++..+.. .+...|..+-.+|...|++++|...
T Consensus 98 g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~ 173 (217)
T 2pl2_A 98 GYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQ 173 (217)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999998875 344 3344333 7888888887776 6788899999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 74 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
|++..+.. |+ +...+..+...+.+.|++++|...|++..
T Consensus 174 ~~~al~~~--P~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 174 YAKALEQA--PK-----------------DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHS--TT-----------------CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhC--CC-----------------ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99987752 32 34588889999999999999999988754
No 60
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.86 E-value=0.00034 Score=43.49 Aligned_cols=85 Identities=14% Similarity=-0.029 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...|++..... +.+...|..+=.+|.+.|++++|.+.|++..+.. |+ +...|..+-.+
T Consensus 54 eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~-----------------~~~~~~~lg~~ 113 (151)
T 3gyz_A 54 EAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KN-----------------DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SS-----------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CC-----------------CcHHHHHHHHH
Confidence 5555555555442 2467889999999999999999999999987753 32 34588899999
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRT 140 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~ 140 (153)
|.+.|++++|...|++..+.. |+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999987753 5543
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.84 E-value=0.00026 Score=47.22 Aligned_cols=114 Identities=18% Similarity=0.076 Sum_probs=79.1
Q ss_pred cccCChHHHHHHHHHHHHC-------CCCCChhhchHH-----------HHHHHHHHHHHc------CC-CccHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDN-------GYHPNVTTYTIL-----------EAYEMLMNVKND------GL-KPDVYTYTAV 57 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l-----------~a~~~~~~m~~~------g~-~~~~~t~~~l 57 (153)
...|++++|...|++..+. ..+.....+..+ .|...+.+.... +- +....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777776662 111122333333 666666665543 22 2345789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 58 MDGFCKVGRSNEVMELLNEAIER------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 58 l~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
-..|...|++++|.+.|++..+. .-.|+ ...+|..+...|...|++++|...|++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD-----------------VAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999998764 11122 24588899999999999999999999886
Q ss_pred HC
Q 047010 132 EH 133 (153)
Q Consensus 132 ~~ 133 (153)
+.
T Consensus 155 ~~ 156 (283)
T 3edt_B 155 EI 156 (283)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 62
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00056 Score=40.45 Aligned_cols=80 Identities=23% Similarity=0.148 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+...|..+-.+|.+.|++++|.+.|++..+.. |+ +...|..+-..+...|++++|...|+
T Consensus 36 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 36 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN-----------------FVRAYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-----------------cHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 367889999999999999999999999987753 32 34578889999999999999999999
Q ss_pred HHHHCC----CCCCHHHHHHHHH
Q 047010 129 LMYEHG----KIPSRTLYDTLIK 147 (153)
Q Consensus 129 ~m~~~~----v~p~~~~~~~li~ 147 (153)
+..+.. -.|+.......+.
T Consensus 97 ~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 97 AARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhCcccCCchhHHHHHHHHH
Confidence 886532 2265555444443
No 63
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.83 E-value=0.00059 Score=42.81 Aligned_cols=112 Identities=7% Similarity=0.097 Sum_probs=78.7
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH--
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRS-- 67 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~g~~-- 67 (153)
+...|++++|...+....+.. +.+...|..+ .|...+++..... +.+...|..+-.. |.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 456788888988888877753 2344444444 7777777766553 2356677777777 7788998
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
++|.+.|++..+.. |+ +...+..+...+...|++++|...|+...+..
T Consensus 98 ~~A~~~~~~al~~~--p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SN-----------------EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CC-----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999887753 22 23477888889999999999999999987653
No 64
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.83 E-value=0.00069 Score=39.26 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+...+.+.|++++|.++|++..+.. | .+..++..+...+.+.|++++|...|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 68 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-----------------NNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-----------------CcHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35788889999999999999999999997753 2 1345788899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcC
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+.+.. ..+..++..+...+.+.
T Consensus 69 ~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 69 ALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHhC-CccHHHHHHHHHHHHHh
Confidence 87653 23566777776666554
No 65
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.0014 Score=39.29 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHH
Q 047010 34 EAYEMLMNVKNDGLKPD----VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~----~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (153)
.|...+++..+. .|+ ...|..+-.+|.+.|++++|.+.+++..+.. |+ +...|..
T Consensus 46 ~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~ 104 (148)
T 2dba_A 46 GALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GG-----------------DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SC-----------------CHHHHHH
T ss_pred HHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--cc-----------------CHHHHHH
Confidence 455555555443 244 5778888888999999999999999887652 21 3457888
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 047010 110 VIQALCGVGKIDKALLLLFLMYEHGKIPS-RTLYDTLIKK 148 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~-~~~~~~li~~ 148 (153)
+...+...|++++|...|++..+.. |+ ...+..+-..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 8889999999999999999987643 44 4444444333
No 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.80 E-value=0.00089 Score=49.06 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=61.5
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...+....+.. +.+...|..+ .|...+++..+... .+...|..+-..|.+.|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999998864 2334455444 78888888877642 3457899999999999999999
Q ss_pred HHHHHHHHHcC
Q 047010 71 MELLNEAIERG 81 (153)
Q Consensus 71 ~~l~~~m~~~~ 81 (153)
.+.+++..+..
T Consensus 364 ~~~~~~~~~~~ 374 (537)
T 3fp2_A 364 EAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.79 E-value=0.00081 Score=46.30 Aligned_cols=127 Identities=6% Similarity=0.090 Sum_probs=80.0
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChh--hchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVT--TYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRSN 68 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~g~~~ 68 (153)
.+.|++++|..+|+...+. .|+.. .|..+ .|..+|++..+... ++...|...... +...|+.+
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence 3568889999999988874 45432 45443 77777777766532 233344333322 22368888
Q ss_pred HHHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcC-CCC--cHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 69 EVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIG-HIP--RTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 69 ~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
+|.++|++..+.. +-+...+ .++.+..... ..| +...|..++....+.|+++.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888776542 1112222 3333333432 244 35689999999999999999999999
Q ss_pred HHHHC
Q 047010 129 LMYEH 133 (153)
Q Consensus 129 ~m~~~ 133 (153)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 68
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.79 E-value=0.00064 Score=41.29 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...|++..... +.+...|..+-.+|.+.|++++|...|++..+.. |+ +...|..+-.+
T Consensus 36 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~ 95 (142)
T 2xcb_A 36 DAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--IN-----------------EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------CcHHHHHHHHH
Confidence 5556666555442 2467788888899999999999999999987753 22 33477888889
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 047010 114 LCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~ 133 (153)
|...|++++|...|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988653
No 69
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.75 E-value=0.00079 Score=39.41 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV--TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 126 (153)
.+...|..+-..|.+.|++++|...+++.....- .++.. -...+|..+...+.+.|++++|...
T Consensus 36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~ 101 (131)
T 1elr_A 36 TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR--------------QIAKAYARIGNSYFKEEKYKDAIHF 101 (131)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH--------------HHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3567788888999999999999999999876421 11100 0045788888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH
Q 047010 127 LFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 127 ~~~m~~~~v~p~~~~~~~li~ 147 (153)
|+...+.. |+......+-.
T Consensus 102 ~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 102 YNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHhC--CCHHHHHHHHH
Confidence 99987753 56655554443
No 70
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.75 E-value=0.0016 Score=48.71 Aligned_cols=73 Identities=11% Similarity=-0.023 Sum_probs=34.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME 72 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~ 72 (153)
.|++++|...++...+. .|+ ...|..+ +|.+.+++..+.. +.+...|..+-..|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 46677777777776654 233 3333333 6666666666542 2346677777777888888888888
Q ss_pred HHHHHHHc
Q 047010 73 LLNEAIER 80 (153)
Q Consensus 73 l~~~m~~~ 80 (153)
.+++..+.
T Consensus 79 ~~~~al~~ 86 (568)
T 2vsy_A 79 LLQQASDA 86 (568)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88877664
No 71
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.75 E-value=0.00074 Score=41.56 Aligned_cols=80 Identities=13% Similarity=0.011 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...|++..... +.+...|..+-.+|.+.|++++|.+.|++..+.. |+ +...|..+-.+
T Consensus 39 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~-----------------~~~~~~~lg~~ 98 (148)
T 2vgx_A 39 DAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IX-----------------EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------CchHHHHHHHH
Confidence 6666666665542 2477888888899999999999999999987753 22 33478888899
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 047010 114 LCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~ 133 (153)
|...|++++|...|+...+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 72
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.73 E-value=0.00096 Score=41.07 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=89.5
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChh-hchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVT-TYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
+...|++++|...+...... .|+.. .+-.+ .|.+.+++..+.. +-+...|..+-.+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 44567888888888876653 23322 11112 7888888777653 2367889999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHH-HHHHHHCCCCC-CHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL-LFLMYEHGKIP-SRTLYDTLIK 147 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~v~p-~~~~~~~li~ 147 (153)
|...|++..+.. |+ +..+|..+-..|.+.|++++|... +++..+. .| +...|...-.
T Consensus 84 A~~~~~~al~~~--p~-----------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 84 AVECYRRSVELN--PT-----------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 999999987752 32 345888899999999999876665 5666653 34 4556666555
Q ss_pred HhhcCC
Q 047010 148 KLDQQP 153 (153)
Q Consensus 148 ~~~~~g 153 (153)
.+.+.|
T Consensus 143 ll~~~G 148 (150)
T 4ga2_A 143 LLDCEG 148 (150)
T ss_dssp HHHTCC
T ss_pred HHHHhC
Confidence 555544
No 73
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.72 E-value=0.0016 Score=37.32 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-..+.+.|++++|.+.+++..+.. |+ +...+..+...+...|++++|...++.
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PD-----------------WGKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cc-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56778888888999999999999999987653 21 344788888999999999999999999
Q ss_pred HHHCC
Q 047010 130 MYEHG 134 (153)
Q Consensus 130 m~~~~ 134 (153)
..+.+
T Consensus 98 ~~~~~ 102 (118)
T 1elw_A 98 GLKHE 102 (118)
T ss_dssp HHTTC
T ss_pred HHHcC
Confidence 87653
No 74
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.0042 Score=41.65 Aligned_cols=133 Identities=10% Similarity=-0.021 Sum_probs=84.8
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK---- 63 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~---- 63 (153)
.+.|++++|...|....+.+ +...+..+ +|...+++..+.+ +...+..+-..|.+
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 17 YKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCc
Confidence 45678888988888888732 22233222 6677777776665 67778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHH---------------------HHHHHHHHcCCCCcHhhHHHHHHHHHc----cC
Q 047010 64 VGRSNEVMELLNEAIERGVTPNVVTL---------------------IHLHNVIDIGHIPRTITFNNVIQALCG----VG 118 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 118 (153)
.+++++|.+.|++..+.+ +...+ ..+....+.+ +...+..+-..|.. .+
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 164 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPK 164 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCC
Confidence 889999999998887765 22222 1112222222 34556666666666 78
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010 119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 119 ~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~ 150 (153)
++++|...|++..+.+ +...+..+-..+.
T Consensus 165 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 165 DLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 8888888888877654 3445554444443
No 75
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.70 E-value=0.0017 Score=39.77 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=77.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
+...|++++|...|....+.. +.+...+..+ .|...+.+..... +.+...|..+-.++.+.|++++|
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A 100 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 100 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 346789999999999988753 2234444433 7777777776653 34677888888999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhH--HHHHHHHHccCcHHHHHHHHHHHH
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF--NNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.+.|++..+.. |+ +...+ -.....+.+.|++++|...+....
T Consensus 101 ~~~~~~a~~~~--p~-----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 101 LRDYETVVKVK--PH-----------------DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999987653 21 11233 334444677899999999988764
No 76
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.70 E-value=0.001 Score=41.26 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|...|++..... +-+...|..+-.+|.+.|++++|.+.|++..+.. |+ +...|..+-..
T Consensus 29 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~ 88 (164)
T 3sz7_A 29 KAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PK-----------------YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHH
Confidence 3444444433331 2367788889999999999999999999987753 22 34588889999
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 047010 114 LCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~ 133 (153)
|.+.|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 99999999999999988653
No 77
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.69 E-value=0.0011 Score=47.51 Aligned_cols=75 Identities=7% Similarity=0.049 Sum_probs=51.5
Q ss_pred cccCChHHHHHHHHHHHHCCCCCC-hhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
.+.|++++|...++...+.. |+ ...|+.+ +|+..+++..... +-+...|..+-.++.+.|++++
T Consensus 108 ~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHH
Confidence 34577888888888888753 44 3344322 5666666666543 2356778888888888888888
Q ss_pred HHHHHHHHHHc
Q 047010 70 VMELLNEAIER 80 (153)
Q Consensus 70 a~~l~~~m~~~ 80 (153)
|+..|++..+.
T Consensus 185 Al~~~~kal~l 195 (382)
T 2h6f_A 185 ELEFIADILNQ 195 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887765
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.63 E-value=0.0017 Score=47.69 Aligned_cols=125 Identities=10% Similarity=-0.005 Sum_probs=86.7
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------------HHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGF 61 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 61 (153)
|.+.|++++|...|+...+. .|+...+..+ +|...+++..+.. +-+...|..+-.+|
T Consensus 147 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 223 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAY 223 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45679999999999999886 4665544433 5666666666553 33678899999999
Q ss_pred Hhc--------CCHHHHHHHHHHHHHcCCC--chHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010 62 CKV--------GRSNEVMELLNEAIERGVT--PNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQAL 114 (153)
Q Consensus 62 ~~~--------g~~~~a~~l~~~m~~~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~ 114 (153)
... |++++|.+.|++..+..-. -+...+ ..+....+.. .-+...+..+-..+
T Consensus 224 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 999 9999999999999875310 133333 2222222221 22456788888899
Q ss_pred HccCcHHHHHHHHHHH
Q 047010 115 CGVGKIDKALLLLFLM 130 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m 130 (153)
...|++++|...+..+
T Consensus 303 ~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 303 EFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998876554
No 79
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.63 E-value=0.0018 Score=38.57 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|...+.+..... +.+...|..+-.++.+.|++++|...+++..+.. |+ +...|..+-..
T Consensus 27 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~l~~~ 86 (137)
T 3q49_B 27 EAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQ-----------------SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ch-----------------hHHHHHHHHHH
Confidence 4444444444332 2356788888889999999999999999887753 22 34588889999
Q ss_pred HHccCcHHHHHHHHHHHHH
Q 047010 114 LCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~ 132 (153)
+...|++++|...|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998764
No 80
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.62 E-value=0.0025 Score=38.03 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=71.1
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG- 81 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~- 81 (153)
.+.|++++|...|....+.. +-+...|+.+-.+|.+.|++++|++.|++..+..
T Consensus 19 ~~~~~~~~A~~~y~~Al~~~-------------------------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 19 YKQKDFEKAHVHYDKAIELD-------------------------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 34566667766666655421 2367789999999999999999999999887632
Q ss_pred -CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047010 82 -VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145 (153)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~l 145 (153)
..++.. .-..+|..+-..+...|++++|...|++..+. .||..+...|
T Consensus 74 ~~~~~~~--------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 74 ETRADYK--------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HTTCCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred ccchhhH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 111110 00136777778889999999999999987663 4676665544
No 81
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.62 E-value=0.0091 Score=44.17 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=94.1
Q ss_pred cCChH-------HHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhc
Q 047010 5 KNDFF-------EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKV 64 (153)
Q Consensus 5 ~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~ 64 (153)
.|+++ +|..+|+...+.-.+-+...|..+ .|..++++..+. .|+ ...|......+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 57776 889999988763223334455443 788888888775 343 35899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHH------------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010 65 GRSNEVMELLNEAIERGVTPNVVTL------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126 (153)
Q Consensus 65 g~~~~a~~l~~~m~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 126 (153)
|++++|.++|++..+..- .+...+ .++....+. ..-+...|..++..+.+.|+.+.|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 999999999999876531 111111 111111111 122567899999999999999999999
Q ss_pred HHHHHHCC-CCCC--HHHHHHHHHHhhc
Q 047010 127 LFLMYEHG-KIPS--RTLYDTLIKKLDQ 151 (153)
Q Consensus 127 ~~~m~~~~-v~p~--~~~~~~li~~~~~ 151 (153)
|++....+ ..|+ ...|...+....+
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 99988753 2332 4456555554433
No 82
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.61 E-value=0.006 Score=40.87 Aligned_cols=134 Identities=10% Similarity=-0.025 Sum_probs=92.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cC
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VG 65 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g 65 (153)
.+++++|...|....+.+ +...+..+ +|...+++..+.+ +...+..+-..|.+ .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 788999999999988875 34444333 6777777777664 67788888888888 89
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHH-------------------HHHHHHHHcCCCCcHhhHHHHHHHHHc----cCcHHH
Q 047010 66 RSNEVMELLNEAIERGVTPNVVTL-------------------IHLHNVIDIGHIPRTITFNNVIQALCG----VGKIDK 122 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 122 (153)
++++|.+.|++..+.+ .+..... ..+....+. -+...+..+-..|.. .+++++
T Consensus 129 ~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN-DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred CHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 9999999999988866 2221111 112222222 244667778888888 999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 123 a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
|...|++..+.+ | ...+..+-..|.+
T Consensus 205 A~~~~~~a~~~~--~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 205 ALARYSKACELE--N-GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHHHHHTT--C-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC--C-HHHHHHHHHHHHc
Confidence 999999988865 2 4555555555443
No 83
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.60 E-value=0.0011 Score=39.23 Aligned_cols=80 Identities=13% Similarity=-0.017 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...+++..+.. +.+...|..+=.++.+.|++++|...|++..+.. |+ +...+..+-..
T Consensus 35 ~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~-----------------~~~~~~~la~~ 94 (121)
T 1hxi_A 35 EAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PK-----------------DIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHH
Confidence 5555555555432 2367788888889999999999999999987753 32 33478888999
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 047010 114 LCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~ 133 (153)
+.+.|++++|...+++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988653
No 84
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.57 E-value=0.00069 Score=49.41 Aligned_cols=63 Identities=10% Similarity=-0.047 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIER-----G-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL 125 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 125 (153)
.+++.|..+|...|++++|+.++++...- | -.|+.. .+++.+-..|...|++++|..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-----------------~~l~nLa~~~~~qg~~~eA~~ 403 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA-----------------SMWLKLGRLYMGLENKAAGEK 403 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-----------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-----------------HHHHHHHHHHHhccCHHHHHH
Confidence 78999999999999999999999987652 2 223333 479999999999999999999
Q ss_pred HHHHHH
Q 047010 126 LLFLMY 131 (153)
Q Consensus 126 ~~~~m~ 131 (153)
++++..
T Consensus 404 ~~~~Al 409 (433)
T 3qww_A 404 ALKKAI 409 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998774
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.55 E-value=0.0013 Score=42.64 Aligned_cols=115 Identities=12% Similarity=0.032 Sum_probs=73.4
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChh-hchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVT-TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
.+.|++++|...|....+.. |+.. .|... .+ ..........++.+-.+|.+.|++++|...|++..+..
T Consensus 15 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-------NV-DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-------HS-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-------hh-cchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 45688888888888877642 3211 11110 00 00011122233447888999999999999999988753
Q ss_pred CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
|+ +...|..+-..+...|++++|...|++..+.. +-+...+..+-.
T Consensus 85 --p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 130 (208)
T 3urz_A 85 --PN-----------------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGN 130 (208)
T ss_dssp --TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred --CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 32 34578888888999999999999999887643 123445544433
No 86
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.54 E-value=0.00095 Score=39.07 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-..|.+.|++++|.+.|++..+.. |+ +...+..+-.++.+.|++++|...|++
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PN-----------------HQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45778888899999999999999999988753 32 234788889999999999999999998
Q ss_pred HHHC-CCCCCHHHHHHHHHHhh
Q 047010 130 MYEH-GKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 130 m~~~-~v~p~~~~~~~li~~~~ 150 (153)
..+. .-.|+...|...+..+.
T Consensus 87 al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 87 IIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHhCCCcHHHHHHHHHHHHHH
Confidence 8654 22344444555555443
No 87
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.51 E-value=0.0032 Score=36.96 Aligned_cols=67 Identities=10% Similarity=-0.014 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..+..+-.++.+.|++++|.+.|++..+.. |+.. .....+..+-..+.+.|++++|...|+...
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHD--------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTST--------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCc--------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466777788999999999999999987753 2210 002367777888999999999999999987
Q ss_pred HCC
Q 047010 132 EHG 134 (153)
Q Consensus 132 ~~~ 134 (153)
+..
T Consensus 104 ~~~ 106 (129)
T 2xev_A 104 TQY 106 (129)
T ss_dssp HHS
T ss_pred HHC
Confidence 643
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.48 E-value=0.0013 Score=40.52 Aligned_cols=80 Identities=10% Similarity=-0.066 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
...+-.+-..|.+.|++++|.+.|++..+.. |+ +..+|..+-..|.+.|++++|...|++.
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ER-----------------DPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 4556678889999999999999999988753 32 3458999999999999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHhhc
Q 047010 131 YEHGKIP-SRTLYDTLIKKLDQ 151 (153)
Q Consensus 131 ~~~~v~p-~~~~~~~li~~~~~ 151 (153)
.+.. | +...+..+-..+.+
T Consensus 92 l~~~--p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 92 VELN--PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHC--TTCHHHHHHHHHHHHH
T ss_pred HHhC--CCCHHHHHHHHHHHHH
Confidence 7753 4 45666666655544
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.47 E-value=0.0042 Score=46.39 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=87.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
|.+.|++++|...|+...+.. +.+...|..+ +|.+.+++..+.. +.+...|..+-.+|.+.|++++|
T Consensus 33 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 110 (568)
T 2vsy_A 33 ELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAA 110 (568)
T ss_dssp HHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 346789999999999998853 2234444444 7888888877653 23578899999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc---CcHHHHHHHHHHHHHCC
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV---GKIDKALLLLFLMYEHG 134 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 134 (153)
.+.|++..+.. |+ +...+..+...+... |++++|...+++..+.+
T Consensus 111 ~~~~~~al~~~--p~-----------------~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 111 AAAYTRAHQLL--PE-----------------EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99999987753 22 234788888888889 99999999999887654
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.46 E-value=0.0047 Score=40.21 Aligned_cols=82 Identities=12% Similarity=-0.024 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...|++.......++...|..+-.++.+.|++++|.+.|++..+. .|+ +...|..+-..
T Consensus 25 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~-----------------~~~~~~~l~~~ 85 (228)
T 4i17_A 25 VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN-----------------LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc-----------------hHHHHHHHHHH
Confidence 78888888887765577777777889999999999999999998764 333 23578899999
Q ss_pred HHccCcHHHHHHHHHHHHHCC
Q 047010 114 LCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~ 134 (153)
|...|++++|...|++..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHC
Confidence 999999999999999987643
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.44 E-value=0.0017 Score=40.81 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=71.0
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
.+.|++++|...++...+. .|+...+..+ .+...+++..... +-+...+..+-..+.+.|++++|
T Consensus 51 ~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A 127 (176)
T 2r5s_A 51 LETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEA 127 (176)
T ss_dssp HHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 4567777777777776553 2333222221 2344444444331 22567788888888888888888
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.+.|++..+..-.+ .+...+..+...+...|+.++|...|++..
T Consensus 128 ~~~~~~~l~~~p~~-----------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 128 LELLWNILKVNLGA-----------------QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHTTCTTT-----------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCccc-----------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888877653211 123478888899999999999999888654
No 92
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.41 E-value=0.0057 Score=35.77 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=66.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
+.+...|..+-..+.+.|++++|.+.|++..+.. |+ +...|..+...+...|++++|...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~ 73 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PK-----------------DAKLYSNRAACYTKLLEFQLALKDC 73 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TT-----------------CHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-----------------cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4466889999999999999999999999987642 21 3458888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 128 FLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 128 ~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
++..+.. ..+...+..+-..+.+.
T Consensus 74 ~~a~~~~-~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 74 EECIQLE-PTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhC-CCchHHHHHHHHHHHHH
Confidence 9987753 23456666665555543
No 93
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.41 E-value=0.0029 Score=49.13 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=86.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 69 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~ 69 (153)
|.+.|++++|...|++..+. .|+ ...|..+ +|.+.+++..+.. +-+...|+.+-..|.+.|++++
T Consensus 53 l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~e 129 (723)
T 4gyw_A 53 LQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPE 129 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 45689999999999999885 354 3455444 7888888877653 2357889999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
|++.|++..+. .|+ +...|..+...+...|++++|.+.+++..
T Consensus 130 Ai~~~~~Al~l--~P~-----------------~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 130 AIASYRTALKL--KPD-----------------FPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHHH--CSC-----------------CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCC-----------------ChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 99999998775 333 33588999999999999999998887764
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.40 E-value=0.0022 Score=43.79 Aligned_cols=114 Identities=14% Similarity=0.088 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHH------------------HHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI------------------HLHNV 95 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~------------------~~~~~ 95 (153)
.|.+.+++..... +-+...+..+-..+.+.|++++|..++++..... |+..... .+.+.
T Consensus 135 ~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~a 211 (287)
T 3qou_A 135 DALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQ 211 (287)
T ss_dssp HHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence 6777777766553 2356778888889999999999999998875542 3333221 11111
Q ss_pred HHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc
Q 047010 96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLDQ 151 (153)
Q Consensus 96 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~~~~ 151 (153)
... ...+...+..+-..+...|++++|...|.+..+..-.. +...+..+...+..
T Consensus 212 l~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 212 VAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred Hhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 111 12356788999999999999999999999997754211 24456666665543
No 95
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.39 E-value=0.0016 Score=48.29 Aligned_cols=64 Identities=6% Similarity=0.035 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-----G-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 124 (153)
..+++.|...|...|++++|+.++++...- | -.|+.. .+++.+-..|...|++++|.
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-----------------~~l~nLa~~~~~~G~~~eA~ 413 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG-----------------MAVMRAGLTNWHAGHIEVGH 413 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH-----------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHHHHCCCHHHHH
Confidence 378999999999999999999999987542 2 223322 47999999999999999999
Q ss_pred HHHHHHH
Q 047010 125 LLLFLMY 131 (153)
Q Consensus 125 ~~~~~m~ 131 (153)
.++++..
T Consensus 414 ~~~~~Al 420 (490)
T 3n71_A 414 GMICKAY 420 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.38 E-value=0.001 Score=41.86 Aligned_cols=100 Identities=14% Similarity=0.025 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHH---HHc-------------CCCC-cHhhHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV---IDI-------------GHIP-RTITFNNVIQ 112 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~---~~~-------------~~~~-~~~~~~~li~ 112 (153)
+...|..+-..+.+.|++++|.+.|++..... |+.........+ ... ...| +...+..+-.
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~ 116 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV 116 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45666777777777777777777777654432 122221110000 000 1123 4678888999
Q ss_pred HHHccCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc
Q 047010 113 ALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLDQ 151 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~~~~ 151 (153)
.+...|++++|...|++..+..-.+ +...+..+...+..
T Consensus 117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 117 QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 9999999999999999988765332 24466666665544
No 97
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.37 E-value=0.017 Score=41.34 Aligned_cols=144 Identities=12% Similarity=0.122 Sum_probs=96.6
Q ss_pred cccCC-hHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 3 CNKND-FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 3 ~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
.+.|+ +++|...|+...+.. +-+...|..+ +|+..+++..... +-+...|..+-.++.+.|++++|
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHH
Confidence 35575 999999999999864 2234455444 7888888877653 34778899999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHH-HHH-c-------------------CCCC-cHhhHHHHHHHHHccC--cHHHHHHH
Q 047010 71 MELLNEAIERGVTPNVVTLIHLHN-VID-I-------------------GHIP-RTITFNNVIQALCGVG--KIDKALLL 126 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~~~~~~-~~~-~-------------------~~~~-~~~~~~~li~~~~~~g--~~~~a~~~ 126 (153)
++.|++..+..-. +...+..... ... . ...| +...|+.+-..+.+.| ++++|...
T Consensus 220 l~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 220 LQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 9999999886432 2222211111 011 1 1223 4457888888888877 68999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 127 LFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 127 ~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
+.++ +. -..+...+..+...|.+
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHH
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHH
Confidence 8887 32 23455666667666654
No 98
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.36 E-value=0.0048 Score=34.86 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-..+.+.|++++|...|++..+.. | .+...|..+-..+...|++++|...|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--P-----------------EESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--C-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--c-----------------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44567778888999999999999999987753 2 1334788888999999999999999999
Q ss_pred HHHCCCC-CCHHHHHHHHHHhhcC
Q 047010 130 MYEHGKI-PSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 130 m~~~~v~-p~~~~~~~li~~~~~~ 152 (153)
..+..-. .+...+..+-..+.+.
T Consensus 66 a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 66 VINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHhCcccchHHHHHHHHHHHHHH
Confidence 8875311 1466676666666554
No 99
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.35 E-value=0.012 Score=39.96 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=80.1
Q ss_pred cccCChHHHHHHHHHHHHCC-CCCChh----hchHH-----------HHHHHHHHHHHcCCC-cc----HHHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNG-YHPNVT----TYTIL-----------EAYEMLMNVKNDGLK-PD----VYTYTAVMDGF 61 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~l-----------~a~~~~~~m~~~g~~-~~----~~t~~~ll~~~ 61 (153)
.+.|++++|..++....+.. ..|+.. .+..+ .|+..+.+....... ++ ...|+.+-..|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 45689999999999988742 222221 11112 778888877763222 23 34689999999
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 62 CKVGRSNEVMELLNEAIER--GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 62 ~~~g~~~~a~~l~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
...|++++|.+.|++..+. ..+.+.. ....+|..+...|.+.|++++|...+++..
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEE--------------FDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchh--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998741 0101111 112478899999999999999999998775
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.31 E-value=0.01 Score=41.38 Aligned_cols=119 Identities=8% Similarity=0.023 Sum_probs=73.8
Q ss_pred HHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 11 a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
|...|++..+.+ .++...+..+ +|++.+.+-...+. .-+...+-.++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566665544 3444443322 77777777655543 2356778888888999999999999998887
Q ss_pred HcCCCc------hHHHHH---HHHHHHHc---------------CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 79 ERGVTP------NVVTLI---HLHNVIDI---------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 79 ~~~~~~------~~~~~~---~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
+. .| |..... .+..+... ...|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 45 222221 11111111 1224433444555589999999999999997654
No 101
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.31 E-value=0.0085 Score=39.79 Aligned_cols=98 Identities=9% Similarity=0.130 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--HHH-----------------HHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV--VTL-----------------IHLHN 94 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~~~-----------------~~~~~ 94 (153)
.|...+++..+... .+...|..+-..|.+.|++++|.+.+++..+.+-.|+. ..+ ..+..
T Consensus 21 ~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (272)
T 3u4t_A 21 EAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA 99 (272)
T ss_dssp HHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 77888888877632 34558888999999999999999999999884433332 111 22222
Q ss_pred HHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 95 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
..+. ...+..+|..+-..|...|++++|...|++..+.
T Consensus 100 a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 100 AVDR-DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHhc-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 2221 1224467778888888888888888888777654
No 102
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.30 E-value=0.0056 Score=33.42 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-..+.+.|++++|.+.|++..+.. |+ +...|..+-..+.+.|++++|...|++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PN-----------------NAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CC-----------------CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45678888889999999999999999987653 22 334788888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhc
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~ 151 (153)
..+.. .-+...+..+-..+.+
T Consensus 69 a~~~~-p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 69 ALELD-PNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHh
Confidence 87653 2245555555555544
No 103
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.29 E-value=0.0062 Score=44.84 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=58.9
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+.+.|++++|...|+...+.. | .+...|..+-.+|.+.|++++|.+.+++..+..
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~--p-----------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 70 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN--P-----------------------SNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC--T-----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhCCHHHHHHHHHHHHHhC--C-----------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888888888777642 2 245667777777777777777777777766542
Q ss_pred CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
|+ +...|..+-.+|.+.|++++|...|++..+.
T Consensus 71 --p~-----------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 71 --KK-----------------YIKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp --TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2346666677777777777777777766553
No 104
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.28 E-value=0.019 Score=39.02 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=77.0
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhh------chHH-----------HHHHHHHHHHHcCC---Ccc--HHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTT------YTIL-----------EAYEMLMNVKNDGL---KPD--VYTYTAVMDG 60 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~l-----------~a~~~~~~m~~~g~---~~~--~~t~~~ll~~ 60 (153)
...|++++|...+....+..-. +... +..+ .|...+.+...... .+. ..+|+.+-..
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4568899999998887765321 1111 1111 67777766654321 122 4588899999
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIER--GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|...|++++|.+.|++..+. ..+.+.. ....+|..+-..|...|++++|...+++..+
T Consensus 165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~--------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEE--------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCcccc--------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999987631 1111110 1124888899999999999999999988753
No 105
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.25 E-value=0.011 Score=41.38 Aligned_cols=107 Identities=9% Similarity=-0.046 Sum_probs=77.3
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCCh----------------hhchHH-----------HHHHHHHHHHHcCCCccHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNV----------------TTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~ 54 (153)
|.+.|++++|...|....+.. |+. ..|..+ +|...+++..... +.+...|
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 233 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 233 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 446789999999999988863 332 444433 7777777776653 2367788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH-HHHHHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA-LLLLFLM 130 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m 130 (153)
..+-.+|.+.|++++|.+.|++..+.. |+ +...+..+...+.+.|++++| ..+++.|
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l~--P~-----------------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQLY--PN-----------------NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SS-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999998887642 22 334777888888888888887 3455555
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.24 E-value=0.012 Score=37.68 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|...+++. +.|+...|..+-..|.+.|++++|.+.|++..+.. |+ +...|..+-..
T Consensus 24 ~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-----------------~~~~~~~lg~~ 80 (213)
T 1hh8_A 24 GALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KH-----------------LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----------------chHHHHHHHHH
Confidence 455555444 46788999999999999999999999999987753 22 34588899999
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 047010 114 LCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~ 133 (153)
+...|++++|...|+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 107
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.24 E-value=0.0098 Score=37.93 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
...|..+-.+|.+.|++++|.+.+++..+.. |+ +...|..+-.+|...|++++|...|++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID--KN-----------------NVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cc-----------------cHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4778888899999999999999999987752 22 3457888889999999999999999988
Q ss_pred HHCCCCC-CHHHHHHHH
Q 047010 131 YEHGKIP-SRTLYDTLI 146 (153)
Q Consensus 131 ~~~~v~p-~~~~~~~li 146 (153)
.+.. | +...+..+-
T Consensus 149 l~~~--p~~~~~~~~l~ 163 (198)
T 2fbn_A 149 ASLN--PNNLDIRNSYE 163 (198)
T ss_dssp HHHS--TTCHHHHHHHH
T ss_pred HHHC--CCcHHHHHHHH
Confidence 7643 4 334444433
No 108
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.23 E-value=0.011 Score=39.42 Aligned_cols=127 Identities=11% Similarity=0.022 Sum_probs=81.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCCh----hhchHH-----------HHHHHHHHHHHcCC-Cc-cHHHHHHHHHHHHh-
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNV----TTYTIL-----------EAYEMLMNVKNDGL-KP-DVYTYTAVMDGFCK- 63 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l-----------~a~~~~~~m~~~g~-~~-~~~t~~~ll~~~~~- 63 (153)
+.+.|++++|...|+.+.+.. |+. ..+..+ .|...+++..+... .| ....+..+-.++.+
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 346799999999999998863 332 222222 88888888877633 12 24567777777888
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 64 -------VGRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 64 -------~g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
.|++++|...|++..+.. |+.. .......+.... .--...+-.+-..|.+.|++++|...|+...+.
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELR-AKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999987753 2211 000000000000 000011345677888999999999999998764
No 109
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.22 E-value=0.011 Score=35.03 Aligned_cols=84 Identities=14% Similarity=-0.011 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+...|..+-..+.+.|++++|...|++..+.. |+ +...|..+-..+...|++++|...++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-----------------VAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cC-----------------cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 467889999999999999999999999987753 22 34588899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 129 LMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 129 ~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
...+.. ..+...+..+-..+.+.
T Consensus 68 ~al~~~-p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 68 RALELD-GQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHhC-chhHHHHHHHHHHHHHH
Confidence 987754 22455666665555543
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.22 E-value=0.0075 Score=37.32 Aligned_cols=83 Identities=11% Similarity=-0.095 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-..+.+.|++++|.+.|++..... |+ +...|..+-.+|...|++++|...|++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~-----------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FY-----------------NVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 44567788888999999999999999988753 32 345899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcC
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
..+..- -+...|..+=.++.+.
T Consensus 96 al~l~P-~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 96 AFALGK-NDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHSS-SCCHHHHHHHHHHHHT
T ss_pred HHhhCC-CCcHHHHHHHHHHHHc
Confidence 977541 2344555555554443
No 111
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.20 E-value=0.0066 Score=42.85 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=76.1
Q ss_pred cccCChHHHHHHHHHHHHCC-CCCCh----hhchHH-----------HHHHHHHHHHHc----CC-C-ccHHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNG-YHPNV----TTYTIL-----------EAYEMLMNVKND----GL-K-PDVYTYTAVMDG 60 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~l-----------~a~~~~~~m~~~----g~-~-~~~~t~~~ll~~ 60 (153)
...|++++|...|....+.- -.++. ..+..+ .|...+.+..+. +- . ....+++.+-..
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 45789999999999987741 11222 223322 555555543321 11 1 124678888899
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCchHH-HH-----------------HHHHHHH----HcCC-CCcHhhHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIER----GVTPNVV-TL-----------------IHLHNVI----DIGH-IPRTITFNNVIQA 113 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~----~~~~~~~-~~-----------------~~~~~~~----~~~~-~~~~~~~~~li~~ 113 (153)
|...|++++|.+.|++..+. +-.+... ++ ..+.... ..+. .....++..+-..
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 99999999999999987653 1111111 11 1111111 1122 2234556777777
Q ss_pred HHccCcHHHHHHHHHHHHHC
Q 047010 114 LCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~ 133 (153)
|.+.|++++|...+++..+.
T Consensus 274 ~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777664
No 112
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.19 E-value=0.014 Score=35.87 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-.+|.+.|++++|...+++..+.. |+ +...|..+-.+|...|++++|...|+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ET-----------------NEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--Cc-----------------chHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 44678899999999999999999999988753 32 345888899999999999999999999
Q ss_pred HHHCCCCCCHH
Q 047010 130 MYEHGKIPSRT 140 (153)
Q Consensus 130 m~~~~v~p~~~ 140 (153)
..+. .|+..
T Consensus 123 al~l--~p~~~ 131 (162)
T 3rkv_A 123 LLRN--HPAAA 131 (162)
T ss_dssp HHHH--CGGGH
T ss_pred HHhc--CCCCH
Confidence 8775 35544
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.18 E-value=0.01 Score=36.34 Aligned_cols=82 Identities=9% Similarity=-0.075 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...+..+-..+.+.|++++|...|++..... | .+...|..+-.+|...|++++|...|++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--H-----------------YDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--c-----------------ccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44667778888999999999999999987653 2 2345788888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhc
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~ 151 (153)
..+..- -+...+..+-.++..
T Consensus 81 al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 81 GAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHST-TCTHHHHHHHHHHHH
T ss_pred HHhcCC-CCchHHHHHHHHHHH
Confidence 876541 234455555444443
No 114
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.17 E-value=0.01 Score=33.75 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-..+...|++++|.+.|++..... |+ +...+..+...+...|++++|...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--PH-----------------NHVLYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CC-----------------cHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 45677888889999999999999999987753 21 344788888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcC
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
..+.. ..+...+..+-..+.+.
T Consensus 64 ~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 64 TVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHhC-cccHHHHHHHHHHHHHH
Confidence 87653 22456666666665544
No 115
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.0041 Score=45.27 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-----G-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 124 (153)
..+++.+...|...|++++|+.++++...- | -.|+.. .+++.+-..|...|++++|.
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a-----------------~~l~nLa~~~~~~g~~~eA~ 391 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG-----------------VQVMKVGKLQLHQGMFPQAM 391 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-----------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH-----------------HHHHHHHHHHHhcCCHHHHH
Confidence 378999999999999999999999987652 2 223322 47999999999999999999
Q ss_pred HHHHHHH
Q 047010 125 LLLFLMY 131 (153)
Q Consensus 125 ~~~~~m~ 131 (153)
.++++..
T Consensus 392 ~~~~~Al 398 (429)
T 3qwp_A 392 KNLRLAF 398 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 116
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.15 E-value=0.013 Score=36.13 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=65.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+...|..+-..+.+.|++++|.+.|++..+.. |+ +...|..+-..|.+.|++++|...|+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 69 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PA-----------------NPIYLSNRAAAYSASGQHEKAAEDAE 69 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc-----------------CHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 356778888899999999999999999987753 22 34588899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 129 LMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 129 ~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+..+.. .-+...|..+-..+.+.
T Consensus 70 ~al~~~-p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 70 LATVVD-PKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHc
Confidence 987754 22456666665555543
No 117
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0074 Score=34.21 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-..|.+.|++++|.+.|++..+.. |+ +...|..+-.+|...|++++|...|++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PD-----------------YVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66788899999999999999999999988753 22 234888999999999999999999998
Q ss_pred HHHC-CCCCCHHHHHHHHHHh
Q 047010 130 MYEH-GKIPSRTLYDTLIKKL 149 (153)
Q Consensus 130 m~~~-~v~p~~~~~~~li~~~ 149 (153)
..+. .-.++.....-+-..+
T Consensus 67 al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 67 GIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHhhhhcCCchhHHHHHHHHH
Confidence 7643 1234454444444433
No 118
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.011 Score=33.53 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=55.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
++...|..+-..+.+.|++++|.+.|++..+.. |+ +...|..+-.++.+.|++++|...++
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~ 62 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQ-----------------NPVGYSNKAMALIKLGEYTQAIQMCQ 62 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-----------------CHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 356678888889999999999999999987752 22 34578888999999999999999999
Q ss_pred HHHHCC
Q 047010 129 LMYEHG 134 (153)
Q Consensus 129 ~m~~~~ 134 (153)
+..+..
T Consensus 63 ~al~~~ 68 (111)
T 2l6j_A 63 QGLRYT 68 (111)
T ss_dssp HHHTSC
T ss_pred HHHHhC
Confidence 987643
No 119
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.13 E-value=0.012 Score=33.90 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC 115 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 115 (153)
.+.+++..... +.+...|..+-..|.+.|++++|.+.|++..+.. |+ +...|..+-..+.
T Consensus 5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~la~~~~ 64 (115)
T 2kat_A 5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PT-----------------YSVAWKWLGKTLQ 64 (115)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CC-----------------cHHHHHHHHHHHH
Confidence 44555554432 2467889999999999999999999999988753 22 3347888899999
Q ss_pred ccCcHHHHHHHHHHHHH
Q 047010 116 GVGKIDKALLLLFLMYE 132 (153)
Q Consensus 116 ~~g~~~~a~~~~~~m~~ 132 (153)
..|++++|...|++..+
T Consensus 65 ~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 65 GQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.09 E-value=0.015 Score=35.04 Aligned_cols=82 Identities=9% Similarity=-0.089 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...+..+-..+.+.|++++|.+.|++..... |+ +...|..+-..+.+.|++++|...|++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HY-----------------DARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--Cc-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33556667778899999999999999987753 32 345788888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhc
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~ 151 (153)
..+..- -+...+..+-.++..
T Consensus 78 al~~~p-~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 78 GALMDI-NEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHhcCC-CCcHHHHHHHHHHHH
Confidence 877541 234444444444443
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.08 E-value=0.014 Score=33.77 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=64.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+...|..+-..+...|++++|.+.|++..... |+ +...|..+...+...|++++|...++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PA-----------------NAVYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CC-----------------CHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 355778888899999999999999999987653 21 34578888999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 129 LMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 129 ~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
...+.. ..+...+..+-..+.+.
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 71 RAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHhcC-ccCHHHHHHHHHHHHHh
Confidence 987653 23455666665555543
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.07 E-value=0.0091 Score=40.64 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-.+|.+.|++++|.+.+++..+. .|+ +...+..+-.++...|++++|...|+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQ-----------------SVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667777777788888888888888776553 232 334677777778888888888888876
Q ss_pred HHH
Q 047010 130 MYE 132 (153)
Q Consensus 130 m~~ 132 (153)
..+
T Consensus 98 al~ 100 (281)
T 2c2l_A 98 AYS 100 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.07 E-value=0.018 Score=40.27 Aligned_cols=96 Identities=11% Similarity=-0.052 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCCcc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 047010 34 EAYEMLMNVKNDGLKPD--------------VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG 99 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~--------------~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 99 (153)
.|...|++......... ...|..+-.+|.+.|++++|.+.|++..+.. |+
T Consensus 165 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~-------------- 228 (336)
T 1p5q_A 165 QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SN-------------- 228 (336)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------
T ss_pred HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------------
Confidence 77788877776543322 5889999999999999999999999988753 32
Q ss_pred CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 100 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
+...|..+-.+|...|++++|...|++..+.. .-+...+..+-..+
T Consensus 229 ---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 229 ---NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34588899999999999999999999987753 12344554444443
No 124
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.07 E-value=0.0074 Score=41.18 Aligned_cols=69 Identities=7% Similarity=-0.116 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKV-GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 52 ~t~~~ll~~~~~~-g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
.+|+.+-..|... |++++|.+.|++..+.. | ..+..+ ...+|+.+...+.+.|++++|...|++
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWY--A------------QDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--H------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--H------------hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3555555666664 66666666666554311 0 000000 024688889999999999999999999
Q ss_pred HHHCC
Q 047010 130 MYEHG 134 (153)
Q Consensus 130 m~~~~ 134 (153)
..+..
T Consensus 184 al~~~ 188 (292)
T 1qqe_A 184 LIKSS 188 (292)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 87754
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.016 Score=33.95 Aligned_cols=82 Identities=12% Similarity=0.006 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
...|..+-..+.+.|++++|.+.|++..+.. |+ +...|..+-.++.+.|++++|...|++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PE-----------------DARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-----------------ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567777788999999999999999987753 22 3458999999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHhhcC
Q 047010 131 YEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 131 ~~~~v~p~~~~~~~li~~~~~~ 152 (153)
.+.. .-+...|..+-.++.+.
T Consensus 65 l~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 65 IEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHhC-CCcHHHHHHHHHHHHHH
Confidence 7754 22355555555555443
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.02 E-value=0.01 Score=37.58 Aligned_cols=130 Identities=10% Similarity=0.004 Sum_probs=70.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHH----cCCCc-cHHHHHHHHHHHHhcC
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKN----DGLKP-DVYTYTAVMDGFCKVG 65 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~----~g~~~-~~~t~~~ll~~~~~~g 65 (153)
....|++++|..+++..... .......+..+ .|...+++... .+..+ ....+..+-..|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34578888888855544331 11122333333 56666655443 22222 3466777777888888
Q ss_pred CHHHHHHHHHHHHHc----CCCchHHH--H-----------------HHHHHHH---HcCCCCc--HhhHHHHHHHHHcc
Q 047010 66 RSNEVMELLNEAIER----GVTPNVVT--L-----------------IHLHNVI---DIGHIPR--TITFNNVIQALCGV 117 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~----~~~~~~~~--~-----------------~~~~~~~---~~~~~~~--~~~~~~li~~~~~~ 117 (153)
++++|.+.+++..+. +-.|.... + ..+.+.. .....+. ..++..+-..+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888888876553 21221111 1 1111111 1111121 23467888889999
Q ss_pred CcHHHHHHHHHHHHH
Q 047010 118 GKIDKALLLLFLMYE 132 (153)
Q Consensus 118 g~~~~a~~~~~~m~~ 132 (153)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999987753
No 127
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.98 E-value=0.0072 Score=41.25 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 114 (153)
+.+.+++..... +.+...+..+-..+.+.|++++|++.|.+..+.. |+. .+...+..+...+
T Consensus 204 a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~---------------~~~~a~~~l~~~~ 265 (287)
T 3qou_A 204 EIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTA---------------ADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTG---------------GGGHHHHHHHHHH
T ss_pred cHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccc---------------ccchHHHHHHHHH
Confidence 334444443332 2356777788888888888888888888887753 211 1245889999999
Q ss_pred HccCcHHHHHHHHHHHH
Q 047010 115 CGVGKIDKALLLLFLMY 131 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m~ 131 (153)
...|+.++|...+++-.
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 99999999988887653
No 128
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.91 E-value=0.0094 Score=35.84 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=73.3
Q ss_pred ccccCChHHHHHHHHHHHHCCCC-CCh----hhchHH-----------HHHHHHHHHHHc----CCCc-cHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYH-PNV----TTYTIL-----------EAYEMLMNVKND----GLKP-DVYTYTAVMDG 60 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l-----------~a~~~~~~m~~~----g~~~-~~~t~~~ll~~ 60 (153)
|...|++++|...+....+..-. ++. ..+..+ +|...+++.... +-.+ ....+..+-..
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 98 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 98 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 34568899999998887764211 111 122222 555555554322 1111 24567778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
+...|++++|.+.+++..+... ..+.. .....+..+-..+...|++++|...+++..+
T Consensus 99 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 99 YTLLQDYEKAIDYHLKHLAIAQELKDRI--------------GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHccchH--------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8889999999998887754210 00000 1134678888899999999999999988754
No 129
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.90 E-value=0.012 Score=40.93 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL 114 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 114 (153)
+...++++...+ .++..++-.+-..+...|++++|++++.+-...+-.++ +...+-..+..+
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~-----------------~lea~~l~vqi~ 146 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG-----------------TTELLLLAIEVA 146 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT-----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC-----------------cHHHHHHHHHHH
Confidence 344555554443 45666667888889999999999999998766543222 235888999999
Q ss_pred HccCcHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHh
Q 047010 115 CGVGKIDKALLLLFLMYEHGKIP-----SRTLYDTLIKKL 149 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m~~~~v~p-----~~~~~~~li~~~ 149 (153)
.+.|+.+.|...+++|.+. .| +..+...|..++
T Consensus 147 L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~ 184 (310)
T 3mv2_B 147 LLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESY 184 (310)
T ss_dssp HHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHH
Confidence 9999999999999999774 46 467777777664
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.90 E-value=0.048 Score=37.00 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=78.1
Q ss_pred cccCChHHHHHHHHHHHHCCCC-CCh----hhchHH-----------HHHHHHHHHHH----c-CCCcc-HHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYH-PNV----TTYTIL-----------EAYEMLMNVKN----D-GLKPD-VYTYTAVMDG 60 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l-----------~a~~~~~~m~~----~-g~~~~-~~t~~~ll~~ 60 (153)
...+++++|...|....+.... ++. ..++.+ .|...+++..+ . +..+. ..+|..+-..
T Consensus 126 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 3u3w_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 4567899999999999884322 222 134444 66777766552 1 22222 3478999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHccC-cHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR-TITFNNVIQALCGVG-KIDKALLLLFLMY 131 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 131 (153)
|.+.|++++|.+.+++..+... ..+..+. ..+|..+-..|.+.| ++++|...+++..
T Consensus 206 y~~~~~y~~A~~~~~~al~~~~--------------~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 206 LYLDSRYEESLYQVNKAIEISC--------------RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH--------------HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHH--------------HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999998765210 0111111 347888888999999 5799999888764
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.89 E-value=0.017 Score=36.46 Aligned_cols=84 Identities=10% Similarity=-0.052 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHH-HH-----------------HHHHHHH----HcCCCC
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE----RGVTPNVV-TL-----------------IHLHNVI----DIGHIP 102 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~-~~-----------------~~~~~~~----~~~~~~ 102 (153)
.....+..+-..+...|++++|.+.+++... .+..|... ++ ..+.+.. ..+..|
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 4668899999999999999999999998766 22222222 11 1222211 222122
Q ss_pred --cHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 103 --RTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 103 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
....+..+-..+...|++++|...+++..+
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 235688888899999999999999988753
No 132
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.026 Score=33.53 Aligned_cols=85 Identities=12% Similarity=0.012 Sum_probs=63.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+...|..+-..+.+.|++++|.+.|++..+.. |+.. -....|..+...|...|++++|...++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~ 89 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQ--------------DQAVLHRNRAACHLKLEDYDKAETEAS 89 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccch--------------HHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 467888999999999999999999999987653 3320 003478888889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhh
Q 047010 129 LMYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 129 ~m~~~~v~p~~~~~~~li~~~~ 150 (153)
...+.. ..+...+..+-..+.
T Consensus 90 ~~~~~~-~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 90 KAIEKD-GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHhhC-ccCHHHHHHHHHHHH
Confidence 887653 124555555544443
No 133
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.84 E-value=0.016 Score=33.57 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
...|..+-..+...|++++|...|++..+.. | .+...+..+...+...|++++|...++..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--P-----------------TNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C-----------------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567888889999999999999999987753 2 13457888889999999999999999988
Q ss_pred HHCC--CCCC----HHHHHHHHHHhhcC
Q 047010 131 YEHG--KIPS----RTLYDTLIKKLDQQ 152 (153)
Q Consensus 131 ~~~~--v~p~----~~~~~~li~~~~~~ 152 (153)
.+.. ..++ ...+..+-..+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~ 92 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKE 92 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHh
Confidence 6542 1223 45555555555443
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.82 E-value=0.029 Score=33.24 Aligned_cols=81 Identities=19% Similarity=0.094 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..|...=..|.+.|++++|.+.|++..+.. |+ +...|..+-.+|.+.|++++|...|++..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PE-----------------NAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 556677778999999999999999987653 32 34588899999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHhhcC
Q 047010 132 EHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 132 ~~~v~p~~~~~~~li~~~~~~ 152 (153)
+.+ ..+...|..+-.++.+.
T Consensus 75 ~~~-p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 75 RLD-SKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHC-TTCHHHHHHHHHHHHHT
T ss_pred Hhh-hhhhHHHHHHHHHHHHC
Confidence 754 23455666665555443
No 135
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.80 E-value=0.008 Score=43.39 Aligned_cols=138 Identities=13% Similarity=0.058 Sum_probs=68.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCC-hhhchHH------------------------------HHHHHHHHHHHcCCCcc
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL------------------------------EAYEMLMNVKNDGLKPD 50 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l------------------------------~a~~~~~~m~~~g~~~~ 50 (153)
|.+.|++++|...+....+.. |+ ...+..+ .+...+.+..... +.+
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 333 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNL 333 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTT
T ss_pred HHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cch
Confidence 345677888888888777642 33 2233222 2333333333321 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHH--H------------------HHHHH----------------
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--L------------------IHLHN---------------- 94 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~--~------------------~~~~~---------------- 94 (153)
...|..+-..|.+.|++++|.+.|++..+....+.... + .....
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 45677788888889999999999988877654443321 1 00000
Q ss_pred ----HHH---cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-CCCCHHHH
Q 047010 95 ----VID---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-KIPSRTLY 142 (153)
Q Consensus 95 ----~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-v~p~~~~~ 142 (153)
+.. .....+..+|+.+-..|...|++++|...|++..+.+ ..|+..+|
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 000 0122355788888889999999999999999887643 44555544
No 136
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.80 E-value=0.0046 Score=47.52 Aligned_cols=45 Identities=16% Similarity=-0.147 Sum_probs=32.1
Q ss_pred cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh
Q 047010 103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIKKL 149 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~-~~~~~li~~~ 149 (153)
+...|..+-..+.+.|++++|...|++..+. .|+. ..+..+-.++
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTL 578 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHH
Confidence 3457888888999999999999999887654 4653 3444444443
No 137
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.76 E-value=0.031 Score=42.96 Aligned_cols=127 Identities=7% Similarity=-0.101 Sum_probs=85.6
Q ss_pred ccCChHHHHHHHHHHHHC------CCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 047010 4 NKNDFFEARKVIDYMFDN------GYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 65 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~------~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g 65 (153)
..|++++|...++...+. ...|+ ...+..+ +|.+.+++..+.. +-+...|..+=.+|.+.|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC
Confidence 467888999999888710 12233 2333322 7777777766542 235677888888888999
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047010 66 RSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~l 145 (153)
++++|.+.|++..+.. |+ +...|..+-..+.+.|++++ ...|++..+.+ .-+...|..+
T Consensus 482 ~~~~A~~~~~~al~l~--P~-----------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~l 540 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF--PG-----------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGL 540 (681)
T ss_dssp CHHHHHHHHHHHHHHS--TT-----------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CC-----------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHH
Confidence 9999999998887643 21 23477888888889999999 88888887643 1244556655
Q ss_pred HHHhhcC
Q 047010 146 IKKLDQQ 152 (153)
Q Consensus 146 i~~~~~~ 152 (153)
-.++.+.
T Consensus 541 g~~~~~~ 547 (681)
T 2pzi_A 541 ARARSAE 547 (681)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 5555544
No 138
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.73 E-value=0.046 Score=38.49 Aligned_cols=131 Identities=11% Similarity=0.087 Sum_probs=80.9
Q ss_pred cccCChHHHHHHHHHHHHCCC-CCCh----hhchHH-----------HHHHHHHHHHH---c-CC-Cc-cHHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGY-HPNV----TTYTIL-----------EAYEMLMNVKN---D-GL-KP-DVYTYTAVMDG 60 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l-----------~a~~~~~~m~~---~-g~-~~-~~~t~~~ll~~ 60 (153)
...|++++|...|....+.-- .++. ..+..+ .|...+.+... . +- .+ ...+++.+-..
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 457899999999999876421 1222 122222 55555554332 2 11 11 34678888899
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCchHH-HH-----------------HHHHHHHH----cCCCCcHhhHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIER----GVTPNVV-TL-----------------IHLHNVID----IGHIPRTITFNNVIQAL 114 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~----~~~~~~~-~~-----------------~~~~~~~~----~~~~~~~~~~~~li~~~ 114 (153)
|...|++++|.+.|++..+. +-++... ++ ..+..... .+......++..+-..+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 99999999999999987652 2111111 11 11122111 13333356788888888
Q ss_pred HccCcHHHHHHHHHHHHHC
Q 047010 115 CGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m~~~ 133 (153)
.+.|++++|...+++..+.
T Consensus 272 ~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 8999999999999888774
No 139
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.69 E-value=0.068 Score=37.60 Aligned_cols=131 Identities=8% Similarity=0.052 Sum_probs=81.1
Q ss_pred ccccCChHHHHHHHHHHHHCCC-CCCh----hhchHH-----------HHHHHHHHHHH----cCCCccHHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGY-HPNV----TTYTIL-----------EAYEMLMNVKN----DGLKPDVYTYTAVMDGF 61 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l-----------~a~~~~~~m~~----~g~~~~~~t~~~ll~~~ 61 (153)
|...|++++|...|....+..- .++. .++..+ .|...+.+... .+.+....++..+-..|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 4567899999999888776310 1111 122222 66666665554 12233467888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCC----CchHHHHHHHHH-----------------HHHcCCCCcH-hhHHHHHHHHHccCc
Q 047010 62 CKVGRSNEVMELLNEAIERGV----TPNVVTLIHLHN-----------------VIDIGHIPRT-ITFNNVIQALCGVGK 119 (153)
Q Consensus 62 ~~~g~~~~a~~l~~~m~~~~~----~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~~li~~~~~~g~ 119 (153)
.+.|++++|.+.+++..+... +.....+..+.. ..+.+..|+. ..+..+-..|...|+
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCC
Confidence 999999999999999877421 111122222211 1122222222 356678888889999
Q ss_pred HHHHHHHHHHHHH
Q 047010 120 IDKALLLLFLMYE 132 (153)
Q Consensus 120 ~~~a~~~~~~m~~ 132 (153)
+++|...|++..+
T Consensus 352 ~~~A~~~~~~al~ 364 (378)
T 3q15_A 352 FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887753
No 140
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.68 E-value=0.0098 Score=44.08 Aligned_cols=67 Identities=12% Similarity=-0.042 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHccCcHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER---GVTPNVVTLIHLHNVIDIGHIPRT-ITFNNVIQALCGVGKIDKALLL 126 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~ 126 (153)
..+++.|-..|...|++++|+.++++...- -.-|+ .|++ .+.+.+-.++...+.+++|..+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~---------------Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS---------------HPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---------------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377999999999999999999999987541 11111 1222 3566777788889999999999
Q ss_pred HHHHHH
Q 047010 127 LFLMYE 132 (153)
Q Consensus 127 ~~~m~~ 132 (153)
++.+++
T Consensus 458 ~~~~~~ 463 (490)
T 3n71_A 458 YHKMRE 463 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999975
No 141
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.68 E-value=0.057 Score=34.74 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHH----HH-----------HHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----HL-----------HNVIDI 98 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~----~~-----------~~~~~~ 98 (153)
+|...+++..+.. +-+...|..+-..|...|++++|.+.|++..+..- -+...+. +. ......
T Consensus 72 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 72 KAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555544432 23667888888889999999999999998877531 1222220 00 111112
Q ss_pred CCCCcHh--hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 99 GHIPRTI--TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 99 ~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
-..|+.. .+-..-.++...|++++|...|++..+ +.|+......+.+
T Consensus 150 ~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 2233332 233334455568899999999999876 4587766655443
No 142
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.65 E-value=0.05 Score=38.26 Aligned_cols=131 Identities=8% Similarity=0.018 Sum_probs=80.7
Q ss_pred ccccCChHHHHHHHHHHHHCCCC-CCh----hhchHH-----------HHHHHHHHHHH----cCC-CccHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYH-PNV----TTYTIL-----------EAYEMLMNVKN----DGL-KPDVYTYTAVMDG 60 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l-----------~a~~~~~~m~~----~g~-~~~~~t~~~ll~~ 60 (153)
|...|++++|...|....+..-. ++. .++..+ .|...+.+..+ .+. +....++..+-..
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 44568999999999887764111 111 133323 66666666554 133 3346778999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC---CchH-HHHHHH-----------------HHHHHcCCCCc-HhhHHHHHHHHHccC
Q 047010 61 FCKVGRSNEVMELLNEAIERGV---TPNV-VTLIHL-----------------HNVIDIGHIPR-TITFNNVIQALCGVG 118 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~---~~~~-~~~~~~-----------------~~~~~~~~~~~-~~~~~~li~~~~~~g 118 (153)
|.+.|++++|.+.+++..+... .|.. ..+..+ ....+.+..|+ ...+..+-..|...|
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999998765311 1111 111111 11112222222 235777888888999
Q ss_pred cHHHHHHHHHHHHH
Q 047010 119 KIDKALLLLFLMYE 132 (153)
Q Consensus 119 ~~~~a~~~~~~m~~ 132 (153)
++++|...+++..+
T Consensus 354 ~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 354 NFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887753
No 143
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.63 E-value=0.05 Score=35.44 Aligned_cols=77 Identities=6% Similarity=-0.086 Sum_probs=49.6
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCCh----hhchHH-----------HHHHHHHHHHHcCCCccH--HHHHHHHHHHH--
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNV----TTYTIL-----------EAYEMLMNVKNDGLKPDV--YTYTAVMDGFC-- 62 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l-----------~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~-- 62 (153)
+.+.|++++|...|+.+.+.. |+. ..+..+ .|...++++.+....... ..+-.+-.++.
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 346799999999999998853 331 122222 888888888776432211 13333333333
Q ss_pred ----------------hcCCHHHHHHHHHHHHHc
Q 047010 63 ----------------KVGRSNEVMELLNEAIER 80 (153)
Q Consensus 63 ----------------~~g~~~~a~~l~~~m~~~ 80 (153)
..|+.++|...|++..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 367899999999998775
No 144
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.58 E-value=0.069 Score=34.52 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCC
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGR 66 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g~ 66 (153)
.+++++|...|....+.|. ...+..+ +|...+++..+.| +...+..|=..|.. .++
T Consensus 31 ~~~~~~A~~~~~~a~~~g~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d 104 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQGD---GDALALLAQLKIRNPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATD 104 (212)
T ss_dssp HTCHHHHHHHHHHHHHTTC---HHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccC
Confidence 4566667666666666542 2222211 4555555554443 44455555555554 566
Q ss_pred HHHHHHHHHHHHHcC
Q 047010 67 SNEVMELLNEAIERG 81 (153)
Q Consensus 67 ~~~a~~l~~~m~~~~ 81 (153)
+++|.+.|++..+.|
T Consensus 105 ~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 105 VAHAITLLQDAARDS 119 (212)
T ss_dssp HHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHcC
Confidence 666666666665544
No 145
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.58 E-value=0.04 Score=42.54 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=86.9
Q ss_pred ccCChHHHHHHHHHHHHC-C-CCCChhhchHH----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDN-G-YHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
+.|+.+.|+.+|....+. + ..+......+. .|..+|....+. .+-+..-|...++.....|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 346788899999998875 2 11222221111 566677666555 3345566778888888888999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 72 ~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
.+|++.......++. ....|...+.--.+.|+.+.+..+.+++.+.- |+......+++-|
T Consensus 525 ~lferal~~~~~~~~----------------~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 525 SLFESSIDKISDSHL----------------LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHTTTSSSTTH----------------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHH----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 999987765432211 23589999999999999999999999998753 5555666666554
No 146
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.58 E-value=0.027 Score=40.01 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...|..+-.+|.+.|++++|.+.+++..+. .|+ +...|..+-.+|...|++++|...|++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~-----------------~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPS-----------------NTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cch-----------------hHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5578899999999999999999999998864 232 345788888999999999999999999
Q ss_pred HHHCC
Q 047010 130 MYEHG 134 (153)
Q Consensus 130 m~~~~ 134 (153)
..+..
T Consensus 333 Al~l~ 337 (370)
T 1ihg_A 333 AQEIA 337 (370)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 87653
No 147
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.51 E-value=0.038 Score=38.63 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=71.6
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
+.+.|++++|...|....+. .|+...+... .-.+....+ ....|..+-.+|.+.|++++|.+.+++..+.
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l-------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAV-------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHH-------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678888888888887664 2433322111 000111111 1137888999999999999999999998775
Q ss_pred CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 81 GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
. |+ +...|..+-.+|...|++++|...|++..+
T Consensus 260 ~--p~-----------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 260 E--EK-----------------NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp C--TT-----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred C--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 32 345888899999999999999999998765
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.50 E-value=0.058 Score=33.42 Aligned_cols=98 Identities=5% Similarity=-0.032 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|...+.+..... +.+...|..+-..|...|++++|.+.|++..+.. |+ +...|..+...
T Consensus 28 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~la~~ 87 (177)
T 2e2e_A 28 AQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GE-----------------NAELYAALATV 87 (177)
T ss_dssp CCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CS-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-----------------CHHHHHHHHHH
Confidence 3445555554442 3467889999999999999999999999987643 21 23467777777
Q ss_pred -HHccCcH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 114 -LCGVGKI--DKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 114 -~~~~g~~--~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
+...|++ ++|...|+...+.. .-+...+..+-..+.+.
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQ 128 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 7788998 99999999987754 12355565555555443
No 149
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.50 E-value=0.02 Score=40.46 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=77.2
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCCh-----hhchHH-----------HHHHHHHHHHHc----CC-CccHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTIL-----------EAYEMLMNVKND----GL-KPDVYTYTAVMDG 60 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l-----------~a~~~~~~m~~~----g~-~~~~~t~~~ll~~ 60 (153)
+.+.|++++|...|+...+.+ |+. ..|..+ .|...+++..+. +- ......|..+-..
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 346789999999999998863 332 233333 556665554332 11 2244678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCc-----------------
Q 047010 61 FCKVGRSNEVMELLNEAIERG----VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK----------------- 119 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------- 119 (153)
|...|++++|.+.+++..+.. -.| ....++..+-..|...|+
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRL-----------------SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchH-----------------HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 999999999999998876531 111 123478888899999999
Q ss_pred HHHHHHHHHHHHH
Q 047010 120 IDKALLLLFLMYE 132 (153)
Q Consensus 120 ~~~a~~~~~~m~~ 132 (153)
+++|...+++..+
T Consensus 199 ~~~A~~~~~~al~ 211 (411)
T 4a1s_A 199 LTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 150
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.46 E-value=0.017 Score=39.15 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010 104 TITFNNVIQALCGVGKIDKALLLLFLMYEH 133 (153)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 133 (153)
..++..+...|.+.|++++|...+++..+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 347888999999999999999999988653
No 151
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.42 E-value=0.0078 Score=35.01 Aligned_cols=76 Identities=17% Similarity=0.024 Sum_probs=54.2
Q ss_pred ccCChHHHHHHHHHHHHCCC--CCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGY--HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV 70 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a 70 (153)
..|++++|...|+...+.+. +-+...+..+ +|...+++..+... -+...|..+-.++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 46889999999999988541 2222333333 88888888877643 3577888899999999999999
Q ss_pred HHHHHHHHHc
Q 047010 71 MELLNEAIER 80 (153)
Q Consensus 71 ~~l~~~m~~~ 80 (153)
.+.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.42 E-value=0.024 Score=38.96 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=80.0
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChh-hchHH----------HHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVT-TYTIL----------EAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKVGRSN 68 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l----------~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~g~~~ 68 (153)
+...|++++|..+|+.+...+ |+.. .|..- +++..|+...... .|. ...+..+=.++.+.|+++
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFT 188 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHH
Confidence 345789999999999887654 4332 22221 5666665332221 111 235667777899999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT 144 (153)
Q Consensus 69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~ 144 (153)
+|++.|++.......|.. ........-.++.+.|+.++|...|+++.... |+...+..
T Consensus 189 eAl~~l~~a~~g~~~P~~----------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a 246 (282)
T 4f3v_A 189 EAERRLTEANDSPAGEAC----------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHTSTTTTTT----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred HHHHHHHHHhcCCCCccc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 999999988754332431 12355666778889999999999999998754 55443333
No 153
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.41 E-value=0.067 Score=32.38 Aligned_cols=81 Identities=11% Similarity=0.013 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.|...+.+..... +.+...|..+-..+.+.|++++|.+.+++..+.. |+ +...|..+...
T Consensus 31 ~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------~~~~~~~~a~~ 90 (166)
T 1a17_A 31 NAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KK-----------------YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----------------cHHHHHHHHHH
Confidence 6777777766543 2367888889999999999999999999987753 21 34478888889
Q ss_pred HHccCcHHHHHHHHHHHHHCC
Q 047010 114 LCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~ 134 (153)
+...|++++|...|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999987653
No 154
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.32 E-value=0.075 Score=31.98 Aligned_cols=105 Identities=9% Similarity=-0.081 Sum_probs=78.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGRSNEVME 72 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g~~~~a~~ 72 (153)
..|+++|...|....+.|. |... ...+ .|...+++--+.| +...+..|=..|.. .++.++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~-lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC-LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH-HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh-HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4578899999999999883 3333 2222 6788888777764 66777777777777 789999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCCC
Q 047010 73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG----VGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 73 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~v 135 (153)
.|++-.+.|.+ ..+..+-..|.. .+++++|...|++..+.|.
T Consensus 83 ~~~~Aa~~g~~---------------------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLNDQ---------------------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTTCH---------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCH---------------------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887642 255566666666 7899999999999888763
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.31 E-value=0.13 Score=34.77 Aligned_cols=132 Identities=10% Similarity=-0.002 Sum_probs=83.7
Q ss_pred cccCChHHHHHHHHHHHHCCCC-CC----hhhchHH-----------HHHHHHHHHH---Hc-CCCc--cHHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYH-PN----VTTYTIL-----------EAYEMLMNVK---ND-GLKP--DVYTYTAVMDG 60 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l-----------~a~~~~~~m~---~~-g~~~--~~~t~~~ll~~ 60 (153)
...|++++|...+....+.... .+ ...|+.+ .|...+++.. +. .-.+ ...+|..+-..
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 4568999999999988764211 11 1234333 7777777655 22 1112 22689999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHH-HHHHHHHH----HCC
Q 047010 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKA-LLLLFLMY----EHG 134 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~----~~~ 134 (153)
|.+.|++++|.+.+++..+.. ++ .+... -..+|..+-..|.+.|++++| ...+++.. ..+
T Consensus 206 y~~~~~y~~Al~~~~kal~~~--~~------------~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEIS--CR------------INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HH------------TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHHH--Hh------------cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999876531 00 00011 134788888999999999999 77676653 223
Q ss_pred CCCCHHHHHHHHHH
Q 047010 135 KIPSRTLYDTLIKK 148 (153)
Q Consensus 135 v~p~~~~~~~li~~ 148 (153)
-.+-...+..+|..
T Consensus 272 ~~~~~~~~~~~~~~ 285 (293)
T 2qfc_A 272 MHAYKEALVNKISR 285 (293)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHH
Confidence 32334444455443
No 156
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.28 E-value=0.021 Score=40.38 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=69.6
Q ss_pred ccccCChHHHHHHHHHHHHCCCC-CCh----hhchHH-----------HHHHHHHHHHHcC----CC-ccHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYH-PNV----TTYTIL-----------EAYEMLMNVKNDG----LK-PDVYTYTAVMDG 60 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l-----------~a~~~~~~m~~~g----~~-~~~~t~~~ll~~ 60 (153)
|...|++++|...++...+..-. ++. ..+..+ +|...+++..... .. ....++..+-..
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 312 (411)
T 4a1s_A 233 YYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT 312 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567788888887776653110 110 122222 5555555443221 10 124567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|.+.|++++|.+.+++....... .+. .....++..+...|.+.|++++|...|++..+
T Consensus 313 ~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 313 YTLLHEFNTAIEYHNRHLAIAQE--------------LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH--------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH--------------CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888888888887776542100 000 01134788889999999999999999998764
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.28 E-value=0.13 Score=34.81 Aligned_cols=83 Identities=13% Similarity=-0.041 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+...+..+-..+.+.|++++|.+.|++..+.. |+ +...|..+-..|.+.|++++|...+++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-----------------VAVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc-----------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45677888889999999999999999987752 22 345888999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcC
Q 047010 130 MYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
..+.. .-+...+..+-.++.+.
T Consensus 64 al~~~-p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 64 ALELD-GQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HTTSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHc
Confidence 87653 22455555555555443
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.27 E-value=0.071 Score=31.20 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.+-.+-..+.+.|++++|...|++..+.. |+ +...|..+-..+...|++++|...|++..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PE-----------------REEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555677889999999999999988752 32 345788888899999999999999999877
Q ss_pred CCCCC-CHHHHHHHHHHhh
Q 047010 133 HGKIP-SRTLYDTLIKKLD 150 (153)
Q Consensus 133 ~~v~p-~~~~~~~li~~~~ 150 (153)
.. | +...+..+-..+.
T Consensus 80 l~--P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 80 LD--PKDIAVHAALAVSHT 96 (121)
T ss_dssp HC--TTCHHHHHHHHHHHH
T ss_pred hC--CCCHHHHHHHHHHHH
Confidence 54 4 3445555544443
No 159
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.18 E-value=0.051 Score=36.94 Aligned_cols=118 Identities=9% Similarity=-0.102 Sum_probs=73.3
Q ss_pred ccccCChHHHHHHHHHHHHCCCC-CC----hhhchHH------------HHHHHHHHHHHc----CCCcc-HHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYH-PN----VTTYTIL------------EAYEMLMNVKND----GLKPD-VYTYTAVMD 59 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l------------~a~~~~~~m~~~----g~~~~-~~t~~~ll~ 59 (153)
|.+.|++++|...++...+.... .+ ..+++.+ .|...+++.... +-.+. ..+|+.+-.
T Consensus 87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 34567888888877776653110 01 1123222 455555544332 11111 356888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.|.+.|++++|.+.|++..+........ ... ...|..+...+...|++++|...|++..+
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLS-------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTT-------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCcc-------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999988754221100 000 12567777888899999999999998765
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.18 E-value=0.074 Score=38.84 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
...|..+-.+|.+.|++++|+..+++..+.. |+ +...|..+-.+|...|++++|...|++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SA-----------------NEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5788889999999999999999999987753 22 3457888888889999999999999988
Q ss_pred HHC
Q 047010 131 YEH 133 (153)
Q Consensus 131 ~~~ 133 (153)
.+.
T Consensus 378 l~l 380 (457)
T 1kt0_A 378 LEV 380 (457)
T ss_dssp HTT
T ss_pred HHh
Confidence 764
No 161
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.16 E-value=0.037 Score=38.69 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=24.7
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 104 TITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
..++..+-..|...|++++|...+++..+
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788888999999999999999988753
No 162
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.11 E-value=0.048 Score=36.80 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=77.1
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCCh-----hhchHH-----------HHHHHHHHHHHc----CCCc-cHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTIL-----------EAYEMLMNVKND----GLKP-DVYTYTAVMDG 60 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l-----------~a~~~~~~m~~~----g~~~-~~~t~~~ll~~ 60 (153)
+.+.|++++|...|+...+.. |+. ..+..+ .|.+.+++.... +-.| ....+..+-..
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 346799999999999998863 332 233322 566666554321 2222 35678888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCc--------------------
Q 047010 61 FCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK-------------------- 119 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------------------- 119 (153)
|...|++++|.+.+++..+... .++.. ....++..+...+...|+
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKV--------------GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCch--------------HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 9999999999999998765310 01110 113478888888999999
Q ss_pred HHHHHHHHHHHH
Q 047010 120 IDKALLLLFLMY 131 (153)
Q Consensus 120 ~~~a~~~~~~m~ 131 (153)
+++|...+++..
T Consensus 159 ~~~A~~~~~~a~ 170 (338)
T 3ro2_A 159 LQAAVDLYEENL 170 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 163
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.88 E-value=0.076 Score=37.06 Aligned_cols=67 Identities=15% Similarity=0.038 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..+..+-..+...|++++|...+++......... ......+|..+-..+...|++++|...+++..
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC--------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455566667777777777777776654321110 00123467788888999999999999999886
Q ss_pred H
Q 047010 132 E 132 (153)
Q Consensus 132 ~ 132 (153)
.
T Consensus 202 ~ 202 (373)
T 1hz4_A 202 N 202 (373)
T ss_dssp H
T ss_pred H
Confidence 4
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.87 E-value=0.12 Score=30.43 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..+..+=..+.+.|++++|++.|++..+. .|+ +...|+.+-.+|.+.|++++|...+++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~-----------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPS-----------------NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 45666667899999999999999998764 233 34589999999999999999999999876
Q ss_pred H
Q 047010 132 E 132 (153)
Q Consensus 132 ~ 132 (153)
+
T Consensus 70 ~ 70 (127)
T 4gcn_A 70 E 70 (127)
T ss_dssp H
T ss_pred H
Confidence 4
No 165
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.76 E-value=0.39 Score=35.41 Aligned_cols=100 Identities=10% Similarity=-0.014 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--HHHH-------------HHHHHHHc--CCCCc-HhhHH--H
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV--VTLI-------------HLHNVIDI--GHIPR-TITFN--N 109 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~~~~-------------~~~~~~~~--~~~~~-~~~~~--~ 109 (153)
+...|..+...+.+.|++++|.++|++..+. .|+. ..+. -....+.. ...|+ ...|- +
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 5788999999999999999999999999885 4432 2331 11112211 11222 22222 2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.+. +...|++++|..+|+...+.. .-+...|..++..+.+.|
T Consensus 398 ~~~-~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 398 LME-YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHH-HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTT
T ss_pred HHH-HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCC
Confidence 222 335889999999999876542 224677777777665543
No 166
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.75 E-value=0.48 Score=39.91 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH---HH-----HHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TL-----IHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 120 (153)
-|...|.-++.+|.+.|++++|.+.+..-++..-.|... .+ .-+..+...--.++...|..+-..|-..|++
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence 466778888999999999999999988765544222111 11 0011111111233444444555555555555
Q ss_pred HHHHHHHHH
Q 047010 121 DKALLLLFL 129 (153)
Q Consensus 121 ~~a~~~~~~ 129 (153)
++|..+|..
T Consensus 1212 eeA~~~Y~k 1220 (1630)
T 1xi4_A 1212 DAAKLLYNN 1220 (1630)
T ss_pred HHHHHHHHh
Confidence 555555555
No 167
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.73 E-value=0.1 Score=35.77 Aligned_cols=26 Identities=8% Similarity=-0.174 Sum_probs=21.8
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.+..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56677777778899999999999876
No 168
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.73 E-value=0.14 Score=35.71 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER----GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL 126 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 126 (153)
...|..+-..|...|++++|.+.+++.... +-.|. ...++..+-..|...|++++|...
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~ 109 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG-----------------EAKASGNLGNTLKVLGNFDEAIVC 109 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH-----------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356888889999999999999999987542 11121 234788888899999999999999
Q ss_pred HHHHHH
Q 047010 127 LFLMYE 132 (153)
Q Consensus 127 ~~~m~~ 132 (153)
+++..+
T Consensus 110 ~~~al~ 115 (406)
T 3sf4_A 110 CQRHLD 115 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 169
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.72 E-value=0.21 Score=41.99 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 128 (153)
++...|..+=..|-..|++++|..+|... ..|..+...+++.|+++.|.+.++
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------------------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------------------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------------------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44455555555566666666666666653 256666666666666666666665
Q ss_pred HH
Q 047010 129 LM 130 (153)
Q Consensus 129 ~m 130 (153)
+.
T Consensus 1246 KA 1247 (1630)
T 1xi4_A 1246 KA 1247 (1630)
T ss_pred Hh
Confidence 44
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.69 E-value=0.14 Score=29.63 Aligned_cols=79 Identities=14% Similarity=-0.019 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010 56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 56 ~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
.+-..+.+.|++++|.+.|++..+.. |+.. .....+..+-..+.+.|++++|...|+...+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~- 69 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGV--------------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRY- 69 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSST--------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCc--------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-
Confidence 34567788999999999999987743 1100 001366677888899999999999999987643
Q ss_pred CCC----HHHHHHHHHHhhcC
Q 047010 136 IPS----RTLYDTLIKKLDQQ 152 (153)
Q Consensus 136 ~p~----~~~~~~li~~~~~~ 152 (153)
|+ ...+..+-..+.+.
T Consensus 70 -p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 70 -PTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp -TTSTTHHHHHHHHHHHHHHT
T ss_pred -CCCcccHHHHHHHHHHHHHc
Confidence 33 34455554444443
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.65 E-value=0.23 Score=32.00 Aligned_cols=106 Identities=15% Similarity=0.058 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCC-ccHHHHHHHHHHHHh----cCC
Q 047010 7 DFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLK-PDVYTYTAVMDGFCK----VGR 66 (153)
Q Consensus 7 ~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~-~~~~t~~~ll~~~~~----~g~ 66 (153)
++++|...|....+.|. ...+..| .|...+++..+.|.. .+...+..|=..|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999988663 3333322 777888877776532 126777778778877 789
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHc------cCcHHHHHHHHHHHHHCCC
Q 047010 67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG------VGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 67 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------~g~~~~a~~~~~~m~~~~v 135 (153)
.++|.+.|++..+.+-.+. .+..+-..|.. ..++++|...|+...+.|-
T Consensus 145 ~~~A~~~~~~A~~~~~~~~--------------------a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 145 DVKASEYFKGSSSLSRTGY--------------------AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHTSCTTH--------------------HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHH--------------------HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999887622222 34444444443 2278999999988877764
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.64 E-value=0.2 Score=36.57 Aligned_cols=107 Identities=7% Similarity=-0.036 Sum_probs=77.4
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCCh----------------hhchHH-----------HHHHHHHHHHHcCCCccHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNV----------------TTYTIL-----------EAYEMLMNVKNDGLKPDVYTY 54 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~ 54 (153)
|.+.|++++|...|....+.. |+. ..|..+ .|+..+++..... +.+...|
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 354 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGL 354 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHH
Confidence 456799999999999988742 332 344333 7888888777653 3467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH-HHHHH
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL-LLFLM 130 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m 130 (153)
..+-.+|.+.|++++|...|++..+. .|+ +...+..+-..+.+.++.+++.+ .+..|
T Consensus 355 ~~~g~a~~~~g~~~~A~~~~~~al~l--~P~-----------------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 355 YRRGEAQLLMNEFESAKGDFEKVLEV--NPQ-----------------NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--C---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764 343 23477778888888888877664 34444
No 173
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.51 E-value=0.072 Score=30.68 Aligned_cols=57 Identities=12% Similarity=0.321 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
.+..+......|+..+..+.+.+|.+.+++..|.++|+..+.+- .+...+|..+++-
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 34444555566677799999999999999999999999997642 2335567777653
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.42 E-value=0.25 Score=30.89 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHcCCCCcHhhH----HHHHHHHHccCcHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHNVIDIGHIPRTITF----NNVIQALCGVGKID 121 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~ 121 (153)
...|+.+-.++.+.|++++|+..+++.++. .+.|+. ...| .-.-.++...|+++
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~-----------------~~A~~~~~~~rG~aL~~lgr~e 119 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE-----------------GKLWISAVYSRALALDGLGRGA 119 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH-----------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch-----------------HHHHHHHHHhHHHHHHHCCCHH
Confidence 348999999999999999999999998763 124442 2467 88888999999999
Q ss_pred HHHHHHHHHH-----HCCCCCCHHHHHHHHH
Q 047010 122 KALLLLFLMY-----EHGKIPSRTLYDTLIK 147 (153)
Q Consensus 122 ~a~~~~~~m~-----~~~v~p~~~~~~~li~ 147 (153)
+|+..|++.. +.++.+......-.+.
T Consensus 120 EAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 120 EAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999875 3467776655544443
No 175
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.38 E-value=0.3 Score=31.60 Aligned_cols=104 Identities=10% Similarity=-0.009 Sum_probs=67.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-hhchHHHHHH-HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNV-TTYTILEAYE-MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~a~~-~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 82 (153)
.|++++|...|+...+.. |+. ..+.....+. +...+. ...-.+-..|.+.|++++|...|++..+.-
T Consensus 109 ~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~- 177 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY- 177 (225)
T ss_dssp CHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred cHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-
Confidence 467788888888877652 332 2222221111 111111 122345667889999999999999988753
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 83 TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
|+.. .....+..+..++.+.|++++|...++.+...+
T Consensus 178 -p~~~--------------~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 178 -PDTQ--------------ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -TTSH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -cCCC--------------ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2211 012468889999999999999999999987754
No 176
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.27 E-value=0.53 Score=33.76 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHHH----------------------
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLI---------------------- 90 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~~---------------------- 90 (153)
.+.+.+++..... +.+...+..+-..|.+.|++++|.+.+++..+.. |+. .++.
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444332 3456778888899999999999999999887653 222 1110
Q ss_pred --------------HHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010 91 --------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 91 --------------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
.+..... ....+..++..+-..|...|++++|...|++..+...
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADE-ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhhHHHHHHHHHHHhh-cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 0001111 1123445788888999999999999999999877543
No 177
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.17 E-value=0.57 Score=33.55 Aligned_cols=72 Identities=22% Similarity=0.153 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH---
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY--- 131 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--- 131 (153)
..++..+...|+.+++...+..+.... | .+...|..+|.++.+.|+..+|++.|+.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~--P-----------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH--P-----------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--T-----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--C-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 446677778888888888888776542 1 245599999999999999999999998874
Q ss_pred --HCCCCCCHHHHHHH
Q 047010 132 --EHGKIPSRTLYDTL 145 (153)
Q Consensus 132 --~~~v~p~~~~~~~l 145 (153)
+.|+.|+..+-...
T Consensus 236 ~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 236 ADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHSCCCCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHH
Confidence 45999988775543
No 178
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.05 E-value=0.43 Score=31.47 Aligned_cols=83 Identities=12% Similarity=-0.003 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHH
Q 047010 34 EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNV 110 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (153)
+|...|+++....... ....+..+-.+|.+.|++++|.+.|++..+..- .|.. ...+..+
T Consensus 33 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----------------~~a~~~l 95 (261)
T 3qky_A 33 RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV-----------------PQAEYER 95 (261)
T ss_dssp HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh-----------------HHHHHHH
Confidence 8888898888764221 156788888899999999999999999887531 1211 2355566
Q ss_pred HHHHHc--------cCcHHHHHHHHHHHHHC
Q 047010 111 IQALCG--------VGKIDKALLLLFLMYEH 133 (153)
Q Consensus 111 i~~~~~--------~g~~~~a~~~~~~m~~~ 133 (153)
-.++.. .|++++|...|++..+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 666767 99999999999998764
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.98 E-value=0.31 Score=29.60 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA 123 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 123 (153)
...+...=..+.+.|++++|.+.|.+..+. .-+.+.. +.. ....+...|..+-.+|.+.|++++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE-WVE-------LDRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH-HHH-------HHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH-HHH-------HHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 345666777889999999999999988764 1111110 000 0012335788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 124 LLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 124 ~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
...++...+.. ..+...|..+-.++...
T Consensus 83 ~~~~~~al~~~-p~~~~a~~~~g~~~~~~ 110 (162)
T 3rkv_A 83 EETSSEVLKRE-ETNEKALFRRAKARIAA 110 (162)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHH
Confidence 99999987754 23455666555555443
No 180
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.80 E-value=0.24 Score=27.26 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 134 (153)
-..+.+.|++++|.+.|++..+.. |+ +.. .|..+-..|...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PV-----------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SS-----------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CC-----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788999999999999987753 22 335 77888888999999999999999987654
No 181
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.75 E-value=0.12 Score=31.38 Aligned_cols=58 Identities=12% Similarity=0.303 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
..+..+......|+..+..+.+.+|.+.+|+..|.++|+-.+.+- .+....|..+++-
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 556667778888999999999999999999999999999997642 3446667777653
No 182
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.69 E-value=0.12 Score=28.99 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
+|...+++..+.. +.+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 25 ~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 25 RALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4444444444332 125568889999999999999999999987653
No 183
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.68 E-value=0.86 Score=33.20 Aligned_cols=133 Identities=11% Similarity=-0.006 Sum_probs=83.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cC
Q 047010 5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VG 65 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g 65 (153)
.+++++|...|....+.|. ...+..| .|...+++..+.| +...+..+=..|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 5788889999888887652 2233222 6777777776654 55666667777777 77
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHH------------------HHHHHHHHcCCCCcHhhHHHHHHHHHc----cCcHHHH
Q 047010 66 RSNEVMELLNEAIERGVTPNVVTL------------------IHLHNVIDIGHIPRTITFNNVIQALCG----VGKIDKA 123 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 123 (153)
++++|.+.|++..+.|.+.-...+ ..+....+. -+...+..+-..|.. .+++++|
T Consensus 130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 899999999988776531111110 122222222 245566666666666 7888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 124 LLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 124 ~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
...|++..+.| +...+..+-..|
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y 229 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMY 229 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHH
Confidence 88888887765 344554444444
No 184
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.62 E-value=0.72 Score=32.03 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=71.8
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChh----hchHH-----------HHHHHHHHHHHc----CCCc-cHHHHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVT----TYTIL-----------EAYEMLMNVKND----GLKP-DVYTYTAVMDGFC 62 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l-----------~a~~~~~~m~~~----g~~~-~~~t~~~ll~~~~ 62 (153)
...|++++|...++...+..-..+.. .+..+ .+.+.+.+.... +... ...++..+-..+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34688999999999877753112221 11111 555555544321 1111 1234566777788
Q ss_pred hcCCHHHHHHHHHHHHHc----CCC--chHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 63 KVGRSNEVMELLNEAIER----GVT--PNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 63 ~~g~~~~a~~l~~~m~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
..|++++|.+.+++..+. +.+ |. ....+..+-..+...|++++|...+++..+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPM-----------------HEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcH-----------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 899999999999887652 111 21 123667777888999999999999998764
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.39 E-value=0.52 Score=29.41 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc--
Q 047010 50 DVYTYTAVMDGFCKVGR----------SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV-- 117 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~----------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 117 (153)
+...|..+=.++.+.++ +++|...|++..+.. |+ +..+|..+-.+|...
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~-----------------~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PK-----------------KDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cC-----------------cHHHHHHHHHHHHHhcc
Confidence 55555555555555554 568888888877642 32 234777888888766
Q ss_pred ---------CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 118 ---------GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 118 ---------g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
|++++|...|++..+. .|+...|...++...+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 4899999999998874 5888888877766543
No 186
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.37 E-value=0.77 Score=31.28 Aligned_cols=28 Identities=18% Similarity=0.011 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.+++.+-..|.+.|++++|...|++..+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788889999999999999999998864
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.21 Score=27.82 Aligned_cols=32 Identities=9% Similarity=0.264 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.+...|..+-.+|.+.|++++|.+.+++..+.
T Consensus 36 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 36 QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 36778888999999999999999999998764
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.29 E-value=0.34 Score=28.67 Aligned_cols=67 Identities=7% Similarity=0.065 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
..+..+-..|...|++++|.+.+++..+..- .++.. ....++..+-..+...|++++|...+++.
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH--------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5788888999999999999999998765210 01100 11346778888899999999999999887
Q ss_pred HH
Q 047010 131 YE 132 (153)
Q Consensus 131 ~~ 132 (153)
.+
T Consensus 116 ~~ 117 (164)
T 3ro3_A 116 LA 117 (164)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.49 Score=33.50 Aligned_cols=118 Identities=7% Similarity=-0.095 Sum_probs=76.5
Q ss_pred ccccCChHHHHHHHHHHHHCC-CCCChh----hchHH-----------HHHHHHHHHH----HcCCCcc-HHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNG-YHPNVT----TYTIL-----------EAYEMLMNVK----NDGLKPD-VYTYTAVMDG 60 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~l-----------~a~~~~~~m~----~~g~~~~-~~t~~~ll~~ 60 (153)
|...|++++|...+..+.+.- -.++.. +.+.+ .+..++.+.. ..+..+. ..++..+...
T Consensus 65 y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 144 (434)
T 4b4t_Q 65 YVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATL 144 (434)
T ss_dssp HHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456789999999988876631 111111 11111 4444444332 2333333 4678889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
|...|++++|.+++++....-...+.. .....+|..++..|...|++++|..+++....
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKLDDK-------------PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSCS-------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhcccc-------------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999999999876532111100 01235789999999999999999999987753
No 190
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.18 E-value=0.6 Score=29.37 Aligned_cols=95 Identities=14% Similarity=-0.041 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
...+..+-..+.+.|++++|.+.|++..+..- .|+.... .+ ...........|..+-.+|.+.|++++|...++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-IL---LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HH---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hH---HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34566777788999999999999999877421 1110000 00 0000000125788888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhh
Q 047010 130 MYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 130 m~~~~v~p~~~~~~~li~~~~ 150 (153)
..+.. ..+...+..+-.++.
T Consensus 114 al~~~-p~~~~~~~~lg~~~~ 133 (198)
T 2fbn_A 114 VLKID-KNNVKALYKLGVANM 133 (198)
T ss_dssp HHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHH
Confidence 87653 234555555544443
No 191
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.16 E-value=1.2 Score=34.47 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=78.1
Q ss_pred cCChHHHH-HHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCC---------Cc------------cH
Q 047010 5 KNDFFEAR-KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL---------KP------------DV 51 (153)
Q Consensus 5 ~~~~~~a~-~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~---------~~------------~~ 51 (153)
.|+.++|. .+++..... ++.+...|-.. .|.+++++...... .| ..
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 45666775 888887753 33344333222 66666666654310 13 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCchHHHH------------HHHHHHHHcC---CCCcHhhHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIER-G-VTPNVVTL------------IHLHNVIDIG---HIPRTITFNNVIQAL 114 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~-~~~~~~~~------------~~~~~~~~~~---~~~~~~~~~~li~~~ 114 (153)
..|-..+....+.|..+.|.++|.+..+. + ..+...+. ...+.+++.+ ..-+...|...+.-.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 46888888888889999999999998776 3 22222211 1111111111 122445677777777
Q ss_pred HccCcHHHHHHHHHHHHHCC
Q 047010 115 CGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 115 ~~~g~~~~a~~~~~~m~~~~ 134 (153)
...|+.+.|..+|++.....
T Consensus 515 ~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTS
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 78899999999999887654
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.84 E-value=1.1 Score=31.82 Aligned_cols=96 Identities=5% Similarity=-0.116 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
..|..+-..+.+.|++++|.+.|++..+.- ++.. .....-...... .+...|..+-.+|.+.|++++|...+++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR--AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH--HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc--cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 457778888999999999999999887620 0000 000000000001 13458888999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHhhcC
Q 047010 131 YEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 131 ~~~~v~p~~~~~~~li~~~~~~ 152 (153)
.+.. .-+...|..+-.++.+.
T Consensus 300 l~~~-p~~~~a~~~lg~~~~~~ 320 (370)
T 1ihg_A 300 LEID-PSNTKALYRRAQGWQGL 320 (370)
T ss_dssp HTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHhC-chhHHHHHHHHHHHHHc
Confidence 8754 22455666555555443
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.84 E-value=0.37 Score=25.70 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
+|...+++..... +.+...|..+-..+.+.|++++|.+.|++..+.
T Consensus 27 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 27 EAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4445555444432 235678888999999999999999999998775
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.71 E-value=0.26 Score=27.08 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.6
Q ss_pred cHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 50 DVY-TYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 50 ~~~-t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+.. .|..+-.+|.+.|++++|.+.|++..+..
T Consensus 33 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 33 GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456 78888889999999999999999988753
No 195
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.58 E-value=1.4 Score=31.50 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=59.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
+.+...|.++--.+...|++++|...+++....+ |+. ..|..+-..+.-.|++++|.+.+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~------------------~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSW------------------LNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCH------------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCH------------------HHHHHHHHHHHHCCCHHHHHHHH
Confidence 5577888888777777899999999999998875 443 36767777788899999999999
Q ss_pred HHHHHCCCCCCHHHHHHH
Q 047010 128 FLMYEHGKIPSRTLYDTL 145 (153)
Q Consensus 128 ~~m~~~~v~p~~~~~~~l 145 (153)
.+.... .|...||...
T Consensus 334 ~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 334 LTAFNL--RPGANTLYWI 349 (372)
T ss_dssp HHHHHH--SCSHHHHHHH
T ss_pred HHHHhc--CCCcChHHHH
Confidence 988765 4666666543
No 196
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.01 E-value=0.69 Score=33.97 Aligned_cols=73 Identities=16% Similarity=0.052 Sum_probs=55.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
..+.+.|++++|.+.|++..+. .|+ +..+|..+-.+|.+.|++++|...+++..+.. .-+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 73 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPS-----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKY 73 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCc-----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 4567889999999999998775 232 34589999999999999999999999998754 224
Q ss_pred HHHHHHHHHHhhc
Q 047010 139 RTLYDTLIKKLDQ 151 (153)
Q Consensus 139 ~~~~~~li~~~~~ 151 (153)
...+..+-.++.+
T Consensus 74 ~~~~~~lg~~~~~ 86 (477)
T 1wao_1 74 IKGYYRRAASNMA 86 (477)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 197
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.62 E-value=0.86 Score=32.62 Aligned_cols=66 Identities=8% Similarity=0.083 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHcCC
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-----RGVTPNVVTLIHLHNVIDIGH 100 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~~~~~~~~~~~~~~ 100 (153)
.+...+..+... -+.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-.+...+.....
T Consensus 189 ~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~~~ 259 (388)
T 2ff4_A 189 AVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQP 259 (388)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCC
Confidence 444455555433 245888999999999999999999999998755 499999998888888776543
No 198
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=92.56 E-value=2.2 Score=31.02 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCchHHHH-----------------HH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-----GRSNEVMELLNEAIERGVTPNVVTL-----------------IH 91 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~ 91 (153)
+|...+++..+.| +...+..+-..|... ++.++|.+.|++..+.|.+.-...+ ..
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 4555555554443 344555555556555 6777777777776665421110000 11
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCC
Q 047010 92 LHNVIDIGHIPRTITFNNVIQALCG----VGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 134 (153)
+....+. .+...+..+-..|.. .+++++|...|++..+.|
T Consensus 354 ~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 354 FRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 1111121 234555666666665 677777777777776654
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.53 E-value=0.8 Score=25.87 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 10 ~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
.|...|....+.. +.+...+..+ .|...+++..... +.+...|..+-.+|.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677766643 2234444433 7788888777653 2356789999999999999999999999886
Q ss_pred Hc
Q 047010 79 ER 80 (153)
Q Consensus 79 ~~ 80 (153)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=92.49 E-value=2.2 Score=30.90 Aligned_cols=128 Identities=11% Similarity=0.104 Sum_probs=65.8
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-----CH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG-----RS 67 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g-----~~ 67 (153)
+.|++++|..+|....+.|..+.......+ +|...|++..+. +...+..+-..+...| +.
T Consensus 15 ~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 467888999999988877632222111111 444555444432 4444555555344443 77
Q ss_pred HHHHHHHHHHHHcCCCchHHHH-----------------HHHHH--------------------------------HHHc
Q 047010 68 NEVMELLNEAIERGVTPNVVTL-----------------IHLHN--------------------------------VIDI 98 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~--------------------------------~~~~ 98 (153)
++|.+.|++-.+.|.+.-...+ ..+.. ....
T Consensus 91 ~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 8888888887776543322111 11111 1111
Q ss_pred CCCCcHhhHHHHHHHHHccC---cHHHHHHHHHHHHHCCC
Q 047010 99 GHIPRTITFNNVIQALCGVG---KIDKALLLLFLMYEHGK 135 (153)
Q Consensus 99 ~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~v 135 (153)
-...+...+..+-..|...| ++++|...|+...+.|-
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~ 210 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT 210 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence 11233346777777787888 89999999998888773
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.27 E-value=0.32 Score=35.48 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=27.0
Q ss_pred ccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 49 PDV-YTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 49 ~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
|+. .+|+.|-..|...|++++|+.++++..+
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 444 7799999999999999999999998654
No 202
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.25 E-value=1.2 Score=30.90 Aligned_cols=99 Identities=11% Similarity=-0.008 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
...|..+-..+.+.|++++|...|++..+. .|+...+.......+.........|..+-.+|.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345677778889999999999999997664 344332100000000000001137888889999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHhhcC
Q 047010 131 YEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 131 ~~~~v~p~~~~~~~li~~~~~~ 152 (153)
.+.. .-+...|..+-.++...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~ 277 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAEL 277 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHhC-CCCHHHHHHHHHHHHHc
Confidence 7653 23566666666666544
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.97 E-value=0.71 Score=33.56 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 56 AVMDGFCKVGRSNEVMELLNEAIERG---VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 56 ~ll~~~~~~g~~~~a~~l~~~m~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
..+..+.+.|++++|++++++..+.. +.|+.. .-..+++.+...|...|++++|..++++..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~--------------~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINI--------------YQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccch--------------HHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34566778899999999999887632 222211 123589999999999999999999999775
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.71 E-value=2.5 Score=29.80 Aligned_cols=119 Identities=9% Similarity=0.049 Sum_probs=67.8
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChhhc-hHH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL--EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l--~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
.+.|++++|...|....+..-..+.... ... ..... ....+..+...|.+.|++++|.+++.....
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNE-----------QETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4568899999999988875321111100 000 00000 112356677778888888888888777644
Q ss_pred c-CCCchHHHH---------------------HHHHH----HHHcCCCCc-HhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 80 R-GVTPNVVTL---------------------IHLHN----VIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 80 ~-~~~~~~~~~---------------------~~~~~----~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
. +..++..+. ..... ....+..+. ..++..+...|...|++++|..+++....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 2 112222211 11111 112222222 35788889999999999999999988753
No 205
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.64 E-value=1.3 Score=30.37 Aligned_cols=86 Identities=13% Similarity=-0.026 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|.++|..+...+ |+....-.+-..+.+.+++++|+..|+...+ .|+.. .....+..+=.+
T Consensus 120 eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~--------------~~~~a~~~LG~a 180 (282)
T 4f3v_A 120 DAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKF--------------LAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcc--------------cHHHHHHHHHHH
Confidence 5556665555433 5443555555688899999999999974432 22211 012256677788
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
+.+.|++++|+..|++.......|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999875444365
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.91 E-value=1.8 Score=26.74 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG---RSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g---~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 111 (153)
+.+.+.+-.+.|. ++..+.-.+-.++++.+ +++++..+|++..+.. .|+.. ....|+.-+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~---------------rd~lY~LAv 79 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQ---------------RDYVFYLAV 79 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Cccch---------------HHHHHHHHH
Confidence 3344444444444 67777777777888888 7779999999988865 34211 123455444
Q ss_pred HHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010 112 QALCGVGKIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~ 139 (153)
+|.+.|++++|.+.++.+.+. .|+.
T Consensus 80 -~~~kl~~Y~~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 80 -GNYRLKEYEKALKYVRGLLQT--EPQN 104 (152)
T ss_dssp -HHHHTSCHHHHHHHHHHHHHH--CTTC
T ss_pred -HHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 447999999999999999774 4643
No 207
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.04 E-value=1.7 Score=25.03 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
..+-++++......|+.....+.+.+|.|.+++..|.++|+-.+...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 34555677777889999999999999999999999999999886643
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.92 E-value=1.5 Score=24.32 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGR---SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL 125 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~---~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 125 (153)
.|...+..+-.++...++ .++|..++++..+.. |+ +.....-+-..+.+.|++++|..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~-----------------~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PY-----------------NEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cC-----------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666666654443 699999999987753 32 33466677778889999999999
Q ss_pred HHHHHHHCC
Q 047010 126 LLFLMYEHG 134 (153)
Q Consensus 126 ~~~~m~~~~ 134 (153)
.++.+.+..
T Consensus 65 ~w~~~l~~~ 73 (93)
T 3bee_A 65 TWVLLLDSN 73 (93)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHhhC
Confidence 999998753
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.74 E-value=2.3 Score=26.14 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=69.0
Q ss_pred cCChHHHHHHHHHHHHCC-C-CCChhhchHH---HHHHHHHHHHHcCC--------------------CccHHHHHHHHH
Q 047010 5 KNDFFEARKVIDYMFDNG-Y-HPNVTTYTIL---EAYEMLMNVKNDGL--------------------KPDVYTYTAVMD 59 (153)
Q Consensus 5 ~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~l---~a~~~~~~m~~~g~--------------------~~~~~t~~~ll~ 59 (153)
.|++++..++.....++. + +.|=+..|.+ ....++.-+..-|- ..++.-.+..++
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ALd 99 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKALD 99 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHHH
Confidence 578888888888887752 1 1111222333 22233333333222 133444555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI 136 (153)
Q Consensus 60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~ 136 (153)
.....|.-|+-.++...+... .+|+....-.+-.+|.+.|+..+|.+++++.-+.|++
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n-------------------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKN-------------------NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC---------------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhccHhHHHHHHHHHhcc-------------------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666666666666664331 2233447778899999999999999999999888863
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.18 E-value=2.7 Score=26.01 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhchH----H---------HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHH
Q 047010 7 DFFEARKVIDYMFDNGYHPNVTTYTI----L---------EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 7 ~~~~a~~~~~~m~~~~~~~~~~~~~~----l---------~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~~a~ 71 (153)
....+++-|....+.+.......|+. + ++..+++++.+.. .| +...+-.+--+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 45567777777776654322233321 1 7889999888875 23 2344455666779999999999
Q ss_pred HHHHHHHHc
Q 047010 72 ELLNEAIER 80 (153)
Q Consensus 72 ~l~~~m~~~ 80 (153)
+.++...+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999875
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.56 E-value=2.1 Score=24.03 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+....-.|=..+.+.|+++.|...|+...+.--+++ ..-.+...++..+-.++.+.|+++.|..++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE------------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC------------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344455666778899999999999998766310000 00112345889999999999999999999999
Q ss_pred HHHCCCCCCH
Q 047010 130 MYEHGKIPSR 139 (153)
Q Consensus 130 m~~~~v~p~~ 139 (153)
..+. .|+.
T Consensus 72 al~l--~P~~ 79 (104)
T 2v5f_A 72 LLEL--DPEH 79 (104)
T ss_dssp HHHH--CTTC
T ss_pred HHhc--CCCC
Confidence 8764 4544
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.09 E-value=3.9 Score=31.54 Aligned_cols=77 Identities=19% Similarity=0.093 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CchHHHH-HHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-------TPNVVTL-IHLHNVIDIGHIPRTITFNNVIQALCGVGKI 120 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 120 (153)
.+...|..+-..+.+.|+++.|++.|..+..... .-+..-. .+.......| -++....+|.+.|++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~ 752 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDI 752 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCH
Confidence 4678999999999999999999999998743110 0011111 1111111111 234555566677777
Q ss_pred HHHHHHHHHHH
Q 047010 121 DKALLLLFLMY 131 (153)
Q Consensus 121 ~~a~~~~~~m~ 131 (153)
++|.+++.++.
T Consensus 753 ~~a~~~~~~~~ 763 (814)
T 3mkq_A 753 QGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 77777776653
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=85.91 E-value=4.5 Score=25.11 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=50.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH---------------------HHHHHHHHHHHcCCCc-cHHHHHHHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------EAYEMLMNVKNDGLKP-DVYTYTAVMDGF 61 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~ 61 (153)
|.+.+++|...++...+.. +-+...|..+ +|...|++..+. .| +...|..+=.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3456788888888888764 3344444433 344444444443 34 567888888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHHc
Q 047010 62 CKVG-----------RSNEVMELLNEAIER 80 (153)
Q Consensus 62 ~~~g-----------~~~~a~~l~~~m~~~ 80 (153)
...| ++++|.+.|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 8764 899999999998775
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=85.42 E-value=9.2 Score=28.20 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=23.3
Q ss_pred cHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 103 RTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
....|...+.--...|+.+.+..+++++.
T Consensus 383 ~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 383 TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34578888887778899999999888775
No 215
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.73 E-value=4.8 Score=33.08 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=71.8
Q ss_pred ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK--PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~--~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
|...|++++|...|.... .|+..+......+.. +..+...... .-..=|.-++..+-+.+.++.+.++-+.-.+
T Consensus 852 ~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 852 YLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLRE---FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHH---HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcc---cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888888886632 234333332222211 1112211111 1122356677777788888877777665544
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 80 RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
...+-+.. .....|..+..++...|++++|...+..+.....+ ......||..+|++
T Consensus 928 ~~~~~~~~--------------~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~ 984 (1139)
T 4fhn_B 928 SKETDDED--------------LSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQ 984 (1139)
T ss_dssp HCCSCCHH--------------HHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHH
T ss_pred hccCCChh--------------hHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhC
Confidence 32211111 01235777888888888888888888777654432 45566666655543
No 216
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.05 E-value=5.3 Score=24.35 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+..+-++++......|+.....+.+.+|.|.+++..|.++|+-.+...
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 444555666777889999999999999999999999999999886643
No 217
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.43 E-value=3.7 Score=24.81 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 87 (153)
.+..++.++.+.+......-+--+--|+.+.|++++|.+..+.+.+. .|+..
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 78889999888763333455666777899999999999999998764 55544
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=81.63 E-value=11 Score=26.14 Aligned_cols=92 Identities=13% Similarity=-0.006 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCcc---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh
Q 047010 34 EAYEMLMNVKNDGLKPD---VYTYTAVMDGFCK-----VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI 105 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~---~~t~~~ll~~~~~-----~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (153)
.+..++++..+. .|+ -..|..+-..|.+ .|+.++|.+.|++-++-+- + -+..
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~----------------~~id 240 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--A----------------HDPD 240 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--T----------------TCSH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--C----------------CCch
Confidence 445555555544 344 4679999999999 5999999999999887532 1 0133
Q ss_pred hHHHHHHHHHcc-CcHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 047010 106 TFNNVIQALCGV-GKIDKALLLLFLMYEHGKI--PSRTLYDTL 145 (153)
Q Consensus 106 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~~v~--p~~~~~~~l 145 (153)
++...-..+++. |+.+++.+.+++....... |+....+.+
T Consensus 241 ~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 241 HHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 666778888885 9999999999999887665 765555443
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=81.44 E-value=6.5 Score=23.45 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.+..++.++...+.+.+. .-.-.+--++.+.|++++|.+.++.+.+.
T Consensus 56 ~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 56 KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 688999998887421123 33344556799999999999999999875
No 220
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.60 E-value=19 Score=28.37 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.+-+...|+++.|+++-++-+.. .|+ +-.+|-.|..+|.+.|+++.|+-+++-|.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPs-----------------eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALD-----------------SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--Cch-----------------hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44466789999999999987664 343 34599999999999999999999999883
No 221
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=79.31 E-value=1.2 Score=28.74 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=65.7
Q ss_pred cccCChHHHHHHHHHHHHCCCCCChh---hchHH------HHHHHHHHHHHcCCCccHHHH--HHHHHHHHhcCCHHHHH
Q 047010 3 CNKNDFFEARKVIDYMFDNGYHPNVT---TYTIL------EAYEMLMNVKNDGLKPDVYTY--TAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 3 ~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l------~a~~~~~~m~~~g~~~~~~t~--~~ll~~~~~~g~~~~a~ 71 (153)
++.|+.+-+..+++.+.+.|..++.. -++.+ .-.++++.+.+.|..++.... .+.+...++.|+.+-..
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 96 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLR 96 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 45688888888888777777655543 22333 335677777777776544221 23344445667776665
Q ss_pred HHHHHHHHcCCCch--------HHH-------HHHHHHHHHcCCCCcHhh---HHHHHHHHHccCcHHHHHHHH
Q 047010 72 ELLNEAIERGVTPN--------VVT-------LIHLHNVIDIGHIPRTIT---FNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 72 ~l~~~m~~~~~~~~--------~~~-------~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~ 127 (153)
.+++.....+..++ +.. .+.+..+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 97 ~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 170 (241)
T 1k1a_A 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170 (241)
T ss_dssp HHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Confidence 55554321111111 111 155666666666554322 234444455666665444443
No 222
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=79.00 E-value=11 Score=24.78 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCccHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVY-------TYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~-------t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
.|+.+++.+.....-++.. .--..+..|.+.|.+++|.+++++....
T Consensus 90 SAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 90 SAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 7788888877664332222 1235667799999999999999998765
No 223
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=78.53 E-value=9.6 Score=23.65 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVT-PNVVTLIHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
..+...=..+.+.|++++|.+.|++..+..-. |+.. ..... .+...|+..-.++.+.|++++|+..+++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---------hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555566788999999999999998764311 1110 00000 0223899999999999999999999998
Q ss_pred HHHC
Q 047010 130 MYEH 133 (153)
Q Consensus 130 m~~~ 133 (153)
..+.
T Consensus 83 AL~l 86 (159)
T 2hr2_A 83 ALHY 86 (159)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 224
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=77.72 E-value=8.5 Score=22.64 Aligned_cols=75 Identities=8% Similarity=-0.133 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|+..+++.-+.| .|+.. +=..|...+.+++|.+.|++-.+.|.+ ..+..+-..
T Consensus 13 ~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~---------------------~a~~~Lg~~ 66 (138)
T 1klx_A 13 KAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSG---------------------NGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCH---------------------HHHHHHHHH
Confidence 5777788777776 33333 556667777889999999998887532 244444444
Q ss_pred HHc----cCcHHHHHHHHHHHHHCC
Q 047010 114 LCG----VGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 114 ~~~----~g~~~~a~~~~~~m~~~~ 134 (153)
|.. .+++++|...|++..+.|
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~g 91 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGLN 91 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcCC
Confidence 444 567777777777766654
No 225
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.94 E-value=11 Score=23.19 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010 69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~ 139 (153)
++.++|..|.+.|+-.... .-|.+.-..+-..|++++|..+|+.=.+.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~A-----------------lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSS-----------------PLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBH-----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3788888888877644333 36888888888999999999999999888888844
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.04 E-value=12 Score=22.91 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~ 86 (153)
.+..++.++...+......-.--|--|+.+.|++++|.++.+.+.+. .|+.
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 78889999888654323333455667899999999999999999875 4543
No 227
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=74.38 E-value=22 Score=25.67 Aligned_cols=85 Identities=9% Similarity=0.093 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCchHHHHHHH----------------HHHHHcCCCCcHhhHHHH
Q 047010 50 DVYTYTAVMDGFCKVG---RSNEVMELLNEAIERGVTPNVVTLIHL----------------HNVIDIGHIPRTITFNNV 110 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g---~~~~a~~l~~~m~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l 110 (153)
+...+..+-..|.+.| +.++|.+.|++..+.|.......+.+- ......-..-+...+..+
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~L 254 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSL 254 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 3337777777888888 899999999998887754444212111 111111112233444444
Q ss_pred HHH-H--HccCcHHHHHHHHHHHHHCC
Q 047010 111 IQA-L--CGVGKIDKALLLLFLMYEHG 134 (153)
Q Consensus 111 i~~-~--~~~g~~~~a~~~~~~m~~~~ 134 (153)
-.. + ...+++++|...|++..+.|
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 444 3 45889999999999888776
No 228
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.16 E-value=8.4 Score=27.90 Aligned_cols=64 Identities=5% Similarity=0.024 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.++..+-.-|.+.|+.++|.+.+.++......+... ...+-.+|..+...+++..+.....+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k----------------id~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK----------------IDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH----------------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 367778889999999999999999998765444322 2355556666666666666666666654
No 229
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.66 E-value=15 Score=22.99 Aligned_cols=73 Identities=10% Similarity=-0.008 Sum_probs=51.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010 48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL 127 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 127 (153)
.-|..-...-|..--.. +.+.++|..|.++|+--... .-|...-..+-..|++.+|..+|
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~A-----------------lfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLA-----------------QFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBH-----------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555444444332222 34778899998888654433 36777777788899999999999
Q ss_pred HHHHHCCCCCCHH
Q 047010 128 FLMYEHGKIPSRT 140 (153)
Q Consensus 128 ~~m~~~~v~p~~~ 140 (153)
+.-.+.+-.|...
T Consensus 120 ~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 120 QEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHTTCBSHHH
T ss_pred HHHHHcCCCcHHH
Confidence 9999888888543
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=72.10 E-value=27 Score=25.73 Aligned_cols=123 Identities=14% Similarity=0.027 Sum_probs=66.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHHHH----HHHHHHHHHcC---------C---CccHHHHHHHHHHHHhcCCH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEA----YEMLMNVKNDG---------L---KPDVYTYTAVMDGFCKVGRS 67 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a----~~~~~~m~~~g---------~---~~~~~t~~~ll~~~~~~g~~ 67 (153)
+.|+.++|..+++..... +.+...|..... .+.++.+.+.- . ......|-.-+....+.+.+
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 468899999999999887 444433332211 12233333221 0 11225577777777778889
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHH--------------HHHHHHcCC--CC-cHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 68 NEVMELLNEAIERGVTPNVVTLIH--------------LHNVIDIGH--IP-RTITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 68 ~~a~~l~~~m~~~~~~~~~~~~~~--------------~~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
+.|.++|++. +.. ..+..++.. .+.+.+.+. -| +...|...++-..+.|+.+.|..+|++.
T Consensus 303 ~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 303 ELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988 322 123333310 111111111 01 2233455555556677777777776664
No 231
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=71.61 E-value=22 Score=24.49 Aligned_cols=124 Identities=9% Similarity=0.095 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhchHH-------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC------
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR------ 66 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~------ 66 (153)
+++++++.+++.+.+.. +-|...|+-- +.++.++++.+.. ..|-..|+---....+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 67888999999988864 3445555322 5677777777654 3467777766666666666
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHH--------------HHc----C--CCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010 67 SNEVMELLNEAIERGVTPNVVTLIHLHNV--------------IDI----G--HIPRTITFNNVIQALCGVGKIDKALLL 126 (153)
Q Consensus 67 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~--------------~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 126 (153)
++++++.+++...... -|...+.....+ ... + ...+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8899999998877653 333333111111 111 1 134667889999999999999999999
Q ss_pred HHHHHH
Q 047010 127 LFLMYE 132 (153)
Q Consensus 127 ~~~m~~ 132 (153)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 232
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=71.59 E-value=25 Score=25.16 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=33.8
Q ss_pred CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047010 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL 145 (153)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~l 145 (153)
..+..+|.++-..+...|++++|...+++....+ |+...|..+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~ll 316 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLL 316 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHH
Confidence 4566788888777777899999999999998876 776655443
No 233
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=69.46 E-value=15 Score=21.77 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
..+.+|.-|...|+.++|...++++.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 45778999999999999999999985
No 234
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.18 E-value=12 Score=24.73 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR 139 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~ 139 (153)
.-|...-..+-..|++.+|..+|+.=.+.+-.|-.
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36888888888999999999999998888888843
No 235
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=67.20 E-value=11 Score=23.36 Aligned_cols=44 Identities=7% Similarity=-0.032 Sum_probs=21.5
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcC
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEH--GKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~--~v~p~~~~~~~li~~~~~~ 152 (153)
.+++.+...+++-.|.++++.+++. +...+..|----++.+.+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~ 82 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEA 82 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Confidence 4444444444555556666666544 4344444444444444443
No 236
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=67.07 E-value=19 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
...+.+|.-|...|+.++|...++++.
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 346789999999999999999999985
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.52 E-value=28 Score=23.75 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=52.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC--CCC
Q 047010 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH--GKI 136 (153)
Q Consensus 59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~v~ 136 (153)
....+.|.++++++....-++.. | -|...=..++.-+|-.|+|+.|..=++...+. ...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P-----------------~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--P-----------------KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--T-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--C-----------------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 44567899999999888877653 2 24446678999999999999999988888653 344
Q ss_pred CCHHHHHHHHHH
Q 047010 137 PSRTLYDTLIKK 148 (153)
Q Consensus 137 p~~~~~~~li~~ 148 (153)
|....|..+|.+
T Consensus 66 ~~a~~yr~lI~a 77 (273)
T 1zbp_A 66 PGASQLRHLVKA 77 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555566666654
No 238
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=66.51 E-value=14 Score=20.40 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
+....|..+-.+|.+.|+++.|..++++..+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45678899999999999999999999998764
No 239
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=65.57 E-value=21 Score=22.02 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=43.0
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCchH-HHHHHHHHHHHcCC
Q 047010 40 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER--GVTPNV-VTLIHLHNVIDIGH 100 (153)
Q Consensus 40 ~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~--~~~~~~-~~~~~~~~~~~~~~ 100 (153)
+.+++.|.+++. --..+++.+...+..-.|.++++.+.+. +...+. .+|+.+..+.+.|.
T Consensus 22 ~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 22 KILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 345667877755 3456677777777888899999999887 544444 45688888887775
No 240
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.47 E-value=25 Score=22.81 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=52.7
Q ss_pred CccHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH
Q 047010 48 KPDVYTYTAVMDGFCK--VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL 125 (153)
Q Consensus 48 ~~~~~t~~~ll~~~~~--~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 125 (153)
+-|..-...-|..--. .++..++.++|..|...|+--... .-|...-..+-..|++++|..
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~A-----------------lfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLS-----------------LFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBH-----------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHH-----------------HHHHHHHHHHHHcCCHHHHHH
Confidence 3455443333333222 455778999999999888654433 368888888888999999999
Q ss_pred HHHHHHHCCCCCCH
Q 047010 126 LLFLMYEHGKIPSR 139 (153)
Q Consensus 126 ~~~~m~~~~v~p~~ 139 (153)
+|+.=.+.+-.|-.
T Consensus 137 Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 137 LLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHTTCBSHH
T ss_pred HHHHHHHcCCccHH
Confidence 99988888878843
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.65 E-value=34 Score=24.10 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCchHHHH--HHHHHHHHcCCCCcHhhHHHHHHHHHc
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNE----AIERGVTPNVVTL--IHLHNVIDIGHIPRTITFNNVIQALCG 116 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~----m~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~li~~~~~ 116 (153)
..+|.++..-|.+.+++++|.+++.. +.+.|..-...-+ -++.-..+.+.++|.....-++..+..
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 47889999999999999999998765 3334322111111 122222345555655544444444443
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=64.33 E-value=24 Score=22.30 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 50 DVYTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
+...|..|=+...+.|+++-|++.|+...
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 56677777777777777777777776643
No 243
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=63.76 E-value=22 Score=21.57 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.++..+...+.+-.|.++++.+++.+...+..|..--++.+.+.|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444445445555567777777766555556666555555555544
No 244
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=63.61 E-value=21 Score=21.42 Aligned_cols=45 Identities=7% Similarity=-0.128 Sum_probs=26.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.++..+...+..-.|.++++.+++.+...+..|..--++.+.+.|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444444555567777777766655556666665566655544
No 245
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=63.53 E-value=9.4 Score=20.85 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhc
Q 047010 119 KIDKALLLLFLMY-EHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 119 ~~~~a~~~~~~m~-~~~v~p~~~~~~~li~~~~~ 151 (153)
..++|...|..|. +.+|.| ..||...+...+.
T Consensus 15 t~eea~~~Fk~LL~e~~V~p-~~tWe~~~~~i~~ 47 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSA-FSTWEKELHKIVF 47 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCS-SSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCcCC-CCCHHHHHHHHcc
Confidence 4578899999885 578877 5677777665543
No 246
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=63.45 E-value=11 Score=22.34 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=28.5
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.+++.+...+..-.|.++++.+++.+...+..|-.-.++.+.+.|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555555556677777777777665566666666666666554
No 247
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=63.17 E-value=9.8 Score=22.81 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=30.8
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.+++..+...+++-.|.++++.+++.+...+..|..--++.+.+.|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3556666666666677888888877766667776666666666554
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.00 E-value=19 Score=20.68 Aligned_cols=83 Identities=13% Similarity=0.042 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|..+.+.+...+. ....--+=+..+...|++++|..+.+.+ ..||...|-++-..
T Consensus 24 EA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----------------------c~pdlepw~ALce~ 79 (115)
T 2uwj_G 24 EALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----------------------PWPALEPWFALCEW 79 (115)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----------------------CCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----------------------CCchHHHHHHHHHH
Confidence 45555555555533 2222222233455666666666554332 24778888877543
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
+.|-.+++..-+.++..+| .|....|.
T Consensus 80 --rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 80 --HLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp --HTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred --hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 6787888888887887776 45444443
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=62.29 E-value=27 Score=22.11 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=36.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
+...+.|+++.|.++.+++. +...|..+-......|+++.|.+.|.+..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------------------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------------------------DSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHhC------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 44567899999999987761 233777777777777777777777766543
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.99 E-value=20 Score=20.62 Aligned_cols=83 Identities=11% Similarity=0.001 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
+|..+.+.+...+. ....--+=+..+...|++++|..+.+.+ ..||...|-++-..
T Consensus 25 EA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----------------------c~pdlepw~ALce~ 80 (116)
T 2p58_C 25 EANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----------------------AYPDLEPWLALCEY 80 (116)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----------------------CCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----------------------CCchHHHHHHHHHH
Confidence 55666666665543 2222223334456677777777665443 23777788877554
Q ss_pred HHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYD 143 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~ 143 (153)
+.|-.+++..-+.++..+| .|....|.
T Consensus 81 --rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 81 --RLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp --HHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred --hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 6777778877777877766 45444443
No 251
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=61.03 E-value=18 Score=19.75 Aligned_cols=47 Identities=9% Similarity=-0.010 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
.+..++++..... +-+......+=..+.+.|++++|.+.|+++.+..
T Consensus 27 ~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 27 EVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4455555554432 2355677777788999999999999999998764
No 252
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=59.21 E-value=8.9 Score=24.39 Aligned_cols=14 Identities=14% Similarity=-0.016 Sum_probs=7.1
Q ss_pred ccCChHHHHHHHHH
Q 047010 4 NKNDFFEARKVIDY 17 (153)
Q Consensus 4 ~~~~~~~a~~~~~~ 17 (153)
+.|+++....++..
T Consensus 15 ~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 15 YSGKLDELKERILA 28 (231)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHh
Confidence 34555555555543
No 253
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=58.84 E-value=7.3 Score=19.85 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHh
Q 047010 120 IDKALLLLFLMY-EHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 120 ~~~a~~~~~~m~-~~~v~p~~~~~~~li~~~ 149 (153)
.++|...|.+|. +.+|.| .-||.-.|+.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s-~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDS-TWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCS-SCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCC-CCcHHHHHHHh
Confidence 357888888885 567655 56777777766
No 254
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=57.34 E-value=21 Score=21.28 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCC
Q 047010 43 KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHI 101 (153)
Q Consensus 43 ~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~ 101 (153)
.+.|.+++. .-..+++.+...+..-.|.++++.+.+.+...+.. +|+.+..+.+.|..
T Consensus 6 r~~g~r~T~-qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 6 PPVKGRATR-QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp ----CHHHH-HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCCccCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344443322 34566777777777788999999998877655554 56888888888753
No 255
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=57.30 E-value=23 Score=22.97 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
-..+..|.+.|.+++|.++|++....
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcC
Confidence 34667899999999999999996553
No 256
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=56.63 E-value=23 Score=20.87 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCC
Q 047010 55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGH 100 (153)
Q Consensus 55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~~~~~~~~~~~~ 100 (153)
-.+++.+...+..-.|.++++.+.+.+...+. .+|+.+..+.+.|.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 45666666667777899999999887654444 45688888888775
No 257
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=56.41 E-value=13 Score=19.69 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhc
Q 047010 119 KIDKALLLLFLMY-EHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 119 ~~~~a~~~~~~m~-~~~v~p~~~~~~~li~~~~~ 151 (153)
..++|...|..|. +.+|.| ..+|.-.+..+..
T Consensus 13 t~eea~~~F~~LL~e~~V~~-~~tWe~~~~~i~~ 45 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPS-NASWEQAMKMIIN 45 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCT-TCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCcCC-CCCHHHHHHHHcc
Confidence 5688999999885 578766 5677777765543
No 258
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=55.70 E-value=14 Score=22.00 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=27.6
Q ss_pred HHHHHHHccC-cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 109 NVIQALCGVG-KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 109 ~li~~~~~~g-~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.++..+...+ ..-.|.++++.+++.+...+..|..--++.+.+.|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4555555555 56667788888877665566666665566555443
No 259
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=55.21 E-value=63 Score=24.82 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=35.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
.....+.|++++|+++.+.+. +...|..+-..+.+.++++.|.+.|.++.
T Consensus 659 f~~~l~~~~~~~A~~~~~~~~------------------------~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDES------------------------AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTCC------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred eehhhhcCCHHHHHHHHHhhC------------------------cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 445678999999999865531 22367777777777777777777777664
No 260
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=55.09 E-value=30 Score=21.36 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047010 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83 (153)
Q Consensus 46 g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 83 (153)
..+|+....-.+-++|.+.|+..+|.+++.+.=+.|++
T Consensus 120 n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 120 NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34678888889999999999999999999999888864
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.93 E-value=10 Score=24.77 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH--------HH-------HHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVY---TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV--------TL-------IHLHNV 95 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--------~~-------~~~~~~ 95 (153)
.-.++++.+.+.|..++.. .++. +...++.|+.+ +++.+.+.|..++.. .+ +++..+
T Consensus 50 g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 124 (285)
T 1wdy_A 50 SREDIVELLLRHGADPVLRKKNGATP-FLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHH
Confidence 3356777777777665432 2233 33344556654 444444555443321 11 566666
Q ss_pred HHcCCCCcHhh------------HHHHHHHHHccCcHHHHHHHHH
Q 047010 96 IDIGHIPRTIT------------FNNVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 96 ~~~~~~~~~~~------------~~~li~~~~~~g~~~~a~~~~~ 128 (153)
.+.|..++... -.+.+...+..|+.+.+..+++
T Consensus 125 l~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169 (285)
T ss_dssp HHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 67666554321 1133444455666655554443
No 262
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=52.56 E-value=17 Score=18.34 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHHHcC-CCch
Q 047010 64 VGRSNEVMELLNEAIERG-VTPN 85 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~-~~~~ 85 (153)
.-+++.|...|.++...| ++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 558999999999998776 4444
No 263
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=52.52 E-value=18 Score=21.92 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=29.9
Q ss_pred HHHHHHHccC-cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 109 NVIQALCGVG-KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 109 ~li~~~~~~g-~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.++..+...+ .+-.|.++++.+++.+...+..|..--++.+.+.|
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 4555555555 56678888888877766667777666666666554
No 264
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=52.47 E-value=27 Score=27.54 Aligned_cols=43 Identities=7% Similarity=-0.054 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA 77 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m 77 (153)
.|+.+.++-... .+-+-.+|-.|..+|.+.|+++.|+-.++.+
T Consensus 355 lAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 355 LALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456666655443 1235689999999999999999999999987
No 265
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.21 E-value=35 Score=19.99 Aligned_cols=47 Identities=6% Similarity=-0.120 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER 80 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~ 80 (153)
....+|+.+....+.|+...--.-|..+...++++.|.++...+...
T Consensus 44 RL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 44 RLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 44456677777777777766666667778889999999999988763
No 266
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=51.14 E-value=38 Score=20.45 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=41.4
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCC
Q 047010 40 MNVKNDGLKPDVYTYTAVMDGFCKVG-RSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHI 101 (153)
Q Consensus 40 ~~m~~~g~~~~~~t~~~ll~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~ 101 (153)
..|.+.|.+++..= ..+++.+...+ ..-.|.++++.+.+.+...+.. +|+.+..+.+.|..
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44667777666543 34555555555 6777999999998876554444 56888888887753
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=51.05 E-value=59 Score=22.58 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047010 51 VYTYTAVMDGFCKVGRSNEVMELLNEA 77 (153)
Q Consensus 51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m 77 (153)
..+|.++..-|.+.+++++|.+++..-
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 477888999999999999999997653
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.97 E-value=67 Score=23.17 Aligned_cols=83 Identities=14% Similarity=-0.026 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHcCCCCcHhhHH
Q 047010 34 EAYEMLMNVKND--GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER---GVTPNVVTLIHLHNVIDIGHIPRTITFN 108 (153)
Q Consensus 34 ~a~~~~~~m~~~--g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (153)
.|.+.+.++... +...-...+-.+|+.+...+++..+...+.+.... +-.|+.. .-...|.
T Consensus 149 ~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~--------------~~lk~~~ 214 (429)
T 4b4t_R 149 NAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR--------------NRYKTYY 214 (429)
T ss_dssp THHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH--------------HHHHHHH
Confidence 566666666654 33445567888899999999999999999987542 2222221 0122444
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHH
Q 047010 109 NVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.++ +...++|..|...|.+...
T Consensus 215 gl~--~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 215 GIH--CLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHG--GGGTSCHHHHHHHHHHHHH
T ss_pred HHH--HHHhChHHHHHHHHHHHhc
Confidence 444 3457889999988887643
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.88 E-value=48 Score=21.49 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~ 89 (153)
+...+|..|...|+.... .-|...-..+-..|++++|.++|+.-.+.+-.|-...-
T Consensus 97 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 97 ESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 556788889888876644 55777888888999999999999999999988876654
No 270
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=50.03 E-value=38 Score=20.02 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=39.5
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCC
Q 047010 41 NVKNDGLKPDVYTYTAVMDGFCKVG-RSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGH 100 (153)
Q Consensus 41 ~m~~~g~~~~~~t~~~ll~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~ 100 (153)
.+++.|.+++..= ..+++.+...+ ..-.|.++++.+.+.+...+.. +|+.+..+.+.|.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4566777665443 34555666665 6778999999998886554444 5688888877765
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.89 E-value=66 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
...+.+|.-|...|+.++|...++++.
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHcc
Confidence 446889999999999999999999985
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.71 E-value=43 Score=20.60 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~ 90 (153)
+...+|..|..+|+.... .-|..--..+-..|++++|.++|+.-.+.+-.|-...-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 778899999999886644 557777888889999999999999999999888766443
No 273
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=49.08 E-value=40 Score=20.01 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHH
Q 047010 49 PDVYTYTAVMDGFCKVGRSNE---VMELLNEAIERGVTP-NVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL 124 (153)
Q Consensus 49 ~~~~t~~~ll~~~~~~g~~~~---a~~l~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 124 (153)
++..+--.+-.++.+..+... +..++....+.+ .| ... ...|. +--++.+.|+++.|.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~R----------------d~lY~-LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQR----------------DYVFY-LAVGNYRLKEYEKAL 94 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHH----------------HHHHH-HHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHH----------------HHHHH-HHHHHHHhhhHHHHH
Confidence 555555555566777776555 888888887754 23 222 12333 344667999999999
Q ss_pred HHHHHHHHC
Q 047010 125 LLLFLMYEH 133 (153)
Q Consensus 125 ~~~~~m~~~ 133 (153)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999774
No 274
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=48.59 E-value=65 Score=22.33 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHCCCCCC---hhhchHH----------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CC
Q 047010 7 DFFEARKVIDYMFDNGYHPN---VTTYTIL----------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-GR 66 (153)
Q Consensus 7 ~~~~a~~~~~~m~~~~~~~~---~~~~~~l----------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~-g~ 66 (153)
..+.|...+++..+. .|+ -..|..+ .|.+.|++-......-+.-++...-+.+++. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345666666666663 455 2344444 7888888877765444577788888888885 99
Q ss_pred HHHHHHHHHHHHHcCCC
Q 047010 67 SNEVMELLNEAIERGVT 83 (153)
Q Consensus 67 ~~~a~~l~~~m~~~~~~ 83 (153)
.+++.+++++-+.....
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999999887654
No 275
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=45.72 E-value=18 Score=22.22 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=35.9
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChh---hchHH------HHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHHHHH
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVT---TYTIL------EAYEMLMNVKNDGLKPDV---YTYTAVMDGFCKVGRSNEVM 71 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l------~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~g~~~~a~ 71 (153)
+.|+.+.+..+ .+.|..||.. -++.+ ....+...+.+.|..++. .-++.|..+ ++.|+.+
T Consensus 13 ~~G~~~~v~~L----l~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A-~~~g~~~--- 84 (169)
T 4gpm_A 13 ENGNKDRVKDL----IENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA-AENGHKE--- 84 (169)
T ss_dssp HTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH---
T ss_pred HcCCHHHHHHH----HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHH-HHcCCHH---
Confidence 45666655444 4566655543 22333 334555556666665443 223444444 3455554
Q ss_pred HHHHHHHHcCCCch
Q 047010 72 ELLNEAIERGVTPN 85 (153)
Q Consensus 72 ~l~~~m~~~~~~~~ 85 (153)
+.+.+.+.|..++
T Consensus 85 -~v~~Ll~~gadvn 97 (169)
T 4gpm_A 85 -VVKLLISKGADVN 97 (169)
T ss_dssp -HHHHHHHTTCCTT
T ss_pred -HHHHHHHCcCCCC
Confidence 3444455565544
No 276
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=44.65 E-value=71 Score=21.63 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHccCcH
Q 047010 105 ITFNNVIQALCGVGKI 120 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~ 120 (153)
...|+++.+|...|+-
T Consensus 226 aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 226 AAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhhHH
Confidence 3577778888777754
No 277
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=44.23 E-value=28 Score=19.76 Aligned_cols=25 Identities=4% Similarity=-0.051 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010 90 IHLHNVIDIGHIPRTITFNNVIQAL 114 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~li~~~ 114 (153)
++..++...|+.|+..+...++.-|
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3444444455555554444444444
No 278
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.93 E-value=35 Score=17.91 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=26.6
Q ss_pred HHHHHHHccC-cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010 109 NVIQALCGVG-KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153 (153)
Q Consensus 109 ~li~~~~~~g-~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g 153 (153)
.++..+...+ ..-.+.++.+.+.+.+...+..|..-.++.+.+.|
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4555555443 44456667777766655556666666666665543
No 279
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.90 E-value=51 Score=19.76 Aligned_cols=42 Identities=10% Similarity=-0.047 Sum_probs=23.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010 110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ 152 (153)
Q Consensus 110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~ 152 (153)
++..+...+ .-.|.++++.+++.+...+..|..--++.+.+.
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 333333344 446777777777666555666655555555543
No 280
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=43.60 E-value=22 Score=15.57 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
-+.-|...|+.++|+.+-++|+.
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 46778899999999999887753
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.08 E-value=59 Score=20.27 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~ 89 (153)
....+|..|..+|+.... .-|..--..+-..|++.+|.++|+.-++.+-.|-...-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 677899999999887654 55677777788899999999999999999988876643
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.55 E-value=35 Score=21.58 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 047010 58 MDGFCKVGRSNEVMELLNEAIERGVTP 84 (153)
Q Consensus 58 l~~~~~~g~~~~a~~l~~~m~~~~~~~ 84 (153)
+...+..|+.+ +++.+.+.|..+
T Consensus 50 L~~A~~~~~~~----~v~~Ll~~g~~~ 72 (241)
T 1k1a_A 50 LHLAVITTLPS----VVRLLVTAGASP 72 (241)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCc
Confidence 33344556654 344444455443
No 283
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=41.14 E-value=30 Score=18.71 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=24.9
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 46 g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
+++|+..||+-+.+.+-+.--..++..+.+++-
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 457888999988888777776677777766653
No 284
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=40.08 E-value=1.2e+02 Score=22.86 Aligned_cols=31 Identities=13% Similarity=-0.072 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 118 g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
+.++++.+.++...+.. .-|.+.|..+-..+
T Consensus 206 ~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll 236 (567)
T 1dce_A 206 NVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 236 (567)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC-CCCccHHHHHHHHH
Confidence 66889999998876643 22556665544444
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.02 E-value=91 Score=21.56 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
..+.+|.-|...|+.++|...++++.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 36789999999999999999999985
No 286
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=39.70 E-value=24 Score=17.26 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHcCCCchHH
Q 047010 65 GRSNEVMELLNEAIERGVTPNVV 87 (153)
Q Consensus 65 g~~~~a~~l~~~m~~~~~~~~~~ 87 (153)
.++..|.++++.+.+.|-.|+..
T Consensus 7 RDv~RaiELle~lq~sgevp~~K 29 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAK 29 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHH
Confidence 36778999999999988777654
No 287
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=39.61 E-value=43 Score=19.75 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCCCcc
Q 047010 36 YEMLMNVKNDGLKPD 50 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~ 50 (153)
.++++.+.+.|..++
T Consensus 55 ~~~v~~Ll~~g~~~~ 69 (165)
T 3twr_A 55 VSVVEYLLQHGADVH 69 (165)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHhcCCCCC
Confidence 455555666665543
No 288
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=39.38 E-value=20 Score=21.53 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH--------HH-------HHHHHHH
Q 047010 35 AYEMLMNVKNDGLKPDVY---TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV--------TL-------IHLHNVI 96 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--------~~-------~~~~~~~ 96 (153)
-.++++.+.+.|..++.. -.+. +-..+..|+.+- .+.+.+.|..++.. .+ +++..+.
T Consensus 48 ~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 122 (172)
T 3v30_A 48 EIETVRFLLEWGADPHILAKERESA-LSLASTGGYTDI----VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122 (172)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHTTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCchhhcccCCCH-HHHHHHCCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 355666666666655432 2233 333445566553 33344445433321 01 4445555
Q ss_pred HcCCCCcHhh--HHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 97 DIGHIPRTIT--FNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 97 ~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
+.|..++... -.+.+...+..|..+-+..+++...
T Consensus 123 ~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 5555443321 1123344445566665555555443
No 289
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=38.65 E-value=59 Score=20.27 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=20.1
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhchHH------HHHHHHHHHHHcC
Q 047010 4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL------EAYEMLMNVKNDG 46 (153)
Q Consensus 4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------~a~~~~~~m~~~g 46 (153)
+.|+.+.+..+++.-.......+..-++.+ ...++++.+.+.|
T Consensus 11 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 59 (228)
T 2dzn_A 11 MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59 (228)
T ss_dssp HTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred HhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 445555555555442221112333333444 3356666666666
No 290
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=37.83 E-value=1.1e+02 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 52 YTYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
..-.++|.-|...|++++|...++++.
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 456789999999999999999999984
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.56 E-value=87 Score=20.64 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH
Q 047010 34 EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL 89 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~ 89 (153)
+...+|..|...|+.... .-|...-..+-..|++++|.++|+.-.+++-.|-...-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 188 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQ 188 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 667889999998876644 55777777788899999999999999999888866644
No 292
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.96 E-value=55 Score=18.16 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010 38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV 117 (153)
Q Consensus 38 ~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 117 (153)
+++.+.+.|+ .+......+-. .......+.|.++++.+...|- ..|.++++++...
T Consensus 26 vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~----------------------~Af~~F~~aL~et 81 (97)
T 3ygs_P 26 LWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGS----------------------QALPLFISCLEDT 81 (97)
T ss_dssp THHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCT----------------------THHHHHHHHHHTT
T ss_pred HHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcCh----------------------HHHHHHHHHHHHc
Confidence 5566666654 23333433332 1122578889999998887652 3889999999877
Q ss_pred CcHHHHHHH
Q 047010 118 GKIDKALLL 126 (153)
Q Consensus 118 g~~~~a~~~ 126 (153)
|+...|..+
T Consensus 82 ~~~~La~lL 90 (97)
T 3ygs_P 82 GQDMLASFL 90 (97)
T ss_dssp TCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 876666543
No 293
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.21 E-value=86 Score=20.17 Aligned_cols=69 Identities=7% Similarity=-0.053 Sum_probs=44.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010 60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT-ITFNNVIQALCGVGKIDKALLLLFLM 130 (153)
Q Consensus 60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m 130 (153)
+|-+..+...|...+..+....+.-|+.+-.-+..++- . +-|. .-|+-+-.-+-+.|+.++|.+.+..-
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv-d-~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV-D-PGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC-C-TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee-c-cchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 67788999999999999987665422111011111110 0 1222 45777777888999999999988653
No 294
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.03 E-value=1.1e+02 Score=20.89 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=55.6
Q ss_pred HHHHHHHHH-HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-----CchHHHHHHHHHHHHcCCCCcHhh
Q 047010 34 EAYEMLMNV-KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GV-----TPNVVTLIHLHNVIDIGHIPRTIT 106 (153)
Q Consensus 34 ~a~~~~~~m-~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 106 (153)
+....+... ...|+..+......+.... .|++..+..+++..... +. ..+. +.+..+.. ......
T Consensus 196 ~~~~~l~~~~~~~~~~i~~~~l~~l~~~~--~G~~r~~~~~l~~~~~~~~~~~~~~~It~---~~v~~~~~---~~~~~~ 267 (353)
T 1sxj_D 196 NAIDRLRFISEQENVKCDDGVLERILDIS--AGDLRRGITLLQSASKGAQYLGDGKNITS---TQVEELAG---VVPHDI 267 (353)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHT--SSCHHHHHHHHHHTHHHHHHHCSCCCCCH---HHHHHHHT---CCCSHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCccCccccH---HHHHHHhC---CCCHHH
Confidence 333444433 3346666666666555543 38888888887765431 10 1221 22233332 111223
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010 107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT 140 (153)
Q Consensus 107 ~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~ 140 (153)
...++.++ ..++.+.|..++.++...|..|...
T Consensus 268 ~~~l~~~~-~~~~~~~a~~~l~~l~~~g~~~~~i 300 (353)
T 1sxj_D 268 LIEIVEKV-KSGDFDEIKKYVNTFMKSGWSAASV 300 (353)
T ss_dssp HHHHHHHH-HSCCHHHHHHHHHHHHHTSCCCTTH
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 44555555 4678999999999998889888554
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.86 E-value=34 Score=21.51 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=11.5
Q ss_pred HHHHHHHccCcHHHHHHHHH
Q 047010 109 NVIQALCGVGKIDKALLLLF 128 (153)
Q Consensus 109 ~li~~~~~~g~~~~a~~~~~ 128 (153)
+.+...+..|+.+-+..+++
T Consensus 179 t~L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 179 TALHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHH
Confidence 44555566777765554444
No 296
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=34.67 E-value=1.2e+02 Score=23.14 Aligned_cols=68 Identities=6% Similarity=-0.068 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC 115 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 115 (153)
...+.++..+-.--+...-.-++..|.+.|..+.|.++++.+-..-+. +...| .-+..|+
T Consensus 501 r~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-------------------~g~~g-eAL~~f~ 560 (570)
T 3f3f_C 501 KMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-------------------AHNII-ESIANFS 560 (570)
T ss_dssp HHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC------------------------------------
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-------------------CccHH-HHHHHHH
Confidence 344444555533345566778999999999999999999988554321 12245 5567788
Q ss_pred ccCcHHHH
Q 047010 116 GVGKIDKA 123 (153)
Q Consensus 116 ~~g~~~~a 123 (153)
|+|+++.+
T Consensus 561 rA~~~~~V 568 (570)
T 3f3f_C 561 RAGKYELV 568 (570)
T ss_dssp --------
T ss_pred HcCChhhc
Confidence 88887764
No 297
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.37 E-value=48 Score=16.44 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=20.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Q 047010 39 LMNVKNDGLKPDVYTYTAVMDGFCKVGR--SNEVMELLNEA 77 (153)
Q Consensus 39 ~~~m~~~g~~~~~~t~~~ll~~~~~~g~--~~~a~~l~~~m 77 (153)
++.+.+.|+.++ -...+..+.|. ++.|++.+.+|
T Consensus 13 lq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 13 LQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 455555565554 23344555665 78888877776
No 298
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.75 E-value=80 Score=18.81 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCC
Q 047010 40 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGH 100 (153)
Q Consensus 40 ~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~~~~~~~~~~~~ 100 (153)
+.+.+.|.+++..= ..+++.+...+..-.|.++++.+.+.+...+. .+|+.+..+.+.|.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34566676655433 34455555566677799999999877644444 45688888888775
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.48 E-value=97 Score=21.57 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAI 78 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~ 78 (153)
....++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35678999999999999999998874
No 300
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=31.04 E-value=1.3e+02 Score=20.62 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=24.5
Q ss_pred cHhhHHHHHHHHHccCc------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010 103 RTITFNNVIQALCGVGK------IDKALLLLFLMYEHGKIPSRTLYDTLIKK 148 (153)
Q Consensus 103 ~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~v~p~~~~~~~li~~ 148 (153)
|...|+----...+.+. ++++++.++.+.+.. .-|.+.|..+-..
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~l 229 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGI 229 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHH
Confidence 34455544444445554 777777777766543 2355555544333
No 301
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=30.91 E-value=1.7e+02 Score=21.99 Aligned_cols=91 Identities=7% Similarity=-0.069 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG--RSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g--~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
+++.++.+.+.. +-+-..|+---..+.+.| +++++++.++++.+... .|..+|+----
T Consensus 92 eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-------------------~N~~aW~~R~~ 151 (567)
T 1dce_A 92 ELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------------------RNFHCWDYRRF 151 (567)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-------------------ccccHHHHHHH
Confidence 344444444332 234556666556666666 55777777777766432 35567777766
Q ss_pred HHHccC-cHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047010 113 ALCGVG-KIDKALLLLFLMYEHGKIPSRTLYDTLI 146 (153)
Q Consensus 113 ~~~~~g-~~~~a~~~~~~m~~~~v~p~~~~~~~li 146 (153)
.+.+.| .++++++.++++.+..+ -|.+.|...-
T Consensus 152 ~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~ 185 (567)
T 1dce_A 152 VAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRS 185 (567)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHH
Confidence 777777 78888888888876542 3555555433
No 302
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=30.61 E-value=28 Score=21.02 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=9.7
Q ss_pred HHHHHHHHHcCCCccH
Q 047010 36 YEMLMNVKNDGLKPDV 51 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~ 51 (153)
.++++.+.+.|..++.
T Consensus 52 ~~~v~~Ll~~g~~~~~ 67 (179)
T 3f6q_A 52 SAVVEMLIMRGARINV 67 (179)
T ss_dssp HHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHcCCCCCC
Confidence 4566666666665543
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.33 E-value=1.6e+02 Score=21.46 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=68.0
Q ss_pred HHHHHHHHHHH--------cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHcCCC
Q 047010 34 EAYEMLMNVKN--------DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV----TPNVVTLIHLHNVIDIGHI 101 (153)
Q Consensus 34 ~a~~~~~~m~~--------~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~----~~~~~~~~~~~~~~~~~~~ 101 (153)
+...++..... .++..+......++.. -.|+..+++.+++....... .....+.+.+.+.......
T Consensus 169 di~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 169 DIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp HHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhh
Confidence 44555555543 2344566667777666 47899999999998876432 1123344555565544321
Q ss_pred -Cc---HhhH---HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 102 -PR---TITF---NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 102 -~~---~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
.| ...| .+++... +.++.+.|+..+.+|.+.|..|....=..++.+.
T Consensus 247 ~~dk~gd~~yd~isal~ksi-rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 247 RFDNKGDRFYDLISALHKSV-RGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp C---CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccCCccchHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11 1222 3333332 4579999999999999999888665555554443
No 304
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.84 E-value=97 Score=18.86 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 047010 35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN 85 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~ 85 (153)
+..++..+.+.|.--|..--.+.+....+.| .....+-.++.+.|+.++
T Consensus 49 i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 49 YERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE 97 (159)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH
Confidence 4455556666665544444444444444433 234455666666666554
No 305
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=29.67 E-value=89 Score=18.35 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCccHHHH--HHHHHHHHhcCCHHHHHHH
Q 047010 35 AYEMLMNVKNDGLKPDVYTY--TAVMDGFCKVGRSNEVMEL 73 (153)
Q Consensus 35 a~~~~~~m~~~g~~~~~~t~--~~ll~~~~~~g~~~~a~~l 73 (153)
-.++++.+.+.|..++.... .+.+-..+..|+.+-+.-+
T Consensus 48 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 88 (167)
T 3v31_A 48 QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88 (167)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 35666667777766543221 1233333445555443333
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.54 E-value=20 Score=23.90 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCCcHh-hHHHHHHHHHccCcHHHHHHHHHH
Q 047010 90 IHLHNVIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLLFL 129 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~ 129 (153)
+++..+.+.+..+... .-.+.+...+..|..+-+..+++.
T Consensus 143 ~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 143 SIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 4444455544433221 233444444556666655555544
No 307
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.52 E-value=1.1e+02 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m~~ 79 (153)
-.=.+|.|+.+.|.+++|.++.+++..
T Consensus 34 NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 34 NKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344689999999999999999999865
No 308
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.27 E-value=1e+02 Score=19.07 Aligned_cols=62 Identities=10% Similarity=-0.010 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH------HHHccCcHHHHHHHH
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ------ALCGVGKIDKALLLL 127 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~------~~~~~g~~~~a~~~~ 127 (153)
|..-+..|- .|++-+|.++++..-+..-.++.. -..|..||. ...+.|++..|..++
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~e----------------r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll 98 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTE----------------SKFLHGMVQVAAGAYKHFDFEDDDGMRSLF 98 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHH----------------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchH----------------HHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 333344444 499999999999998765555111 236666666 234689999999999
Q ss_pred HHHHH
Q 047010 128 FLMYE 132 (153)
Q Consensus 128 ~~m~~ 132 (153)
.+...
T Consensus 99 ~~Al~ 103 (161)
T 2ijq_A 99 RTSLQ 103 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98854
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.67 E-value=1.3e+02 Score=19.86 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH--cCCCch-----HHH---H-------------HHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 57 VMDGFCKVGRSNEVMELLNEAIE--RGVTPN-----VVT---L-------------IHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 57 ll~~~~~~g~~~~a~~l~~~m~~--~~~~~~-----~~~---~-------------~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
-|+.+....++++|.+++++..+ .+.++. ... + .+..++ .. .++...--..+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 46778888899999888887654 222210 111 1 122222 23 5556677788899
Q ss_pred HHccCcHHHHHHHHHHHH
Q 047010 114 LCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~ 131 (153)
+.+.|+-++|..+|-+.+
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 999999999999986654
No 310
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=28.05 E-value=24 Score=17.72 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=16.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCchH
Q 047010 64 VGRSNEVMELLNEAIERGVTPNV 86 (153)
Q Consensus 64 ~g~~~~a~~l~~~m~~~~~~~~~ 86 (153)
.-+++.|...|.+. +..+||+.
T Consensus 32 ~Wd~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 32 NWNYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp TTCSHHHHHHHHHS-TTTSCHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHH
Confidence 44889999999996 44566653
No 311
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.35 E-value=1.5e+02 Score=20.31 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047010 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT 83 (153)
Q Consensus 37 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 83 (153)
+++..+.+.|+.|...++.=++..+++.=.++.+..+++.....|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 55566777788888888888888888877788888888888777654
No 312
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=27.34 E-value=38 Score=22.57 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCC-------CccHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGL-------KPDVYTYTAVMDGFCKVGR---------SNEVMELLNEAIERGVTPNVVTLIHLHNVID 97 (153)
Q Consensus 34 ~a~~~~~~m~~~g~-------~~~~~t~~~ll~~~~~~g~---------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~ 97 (153)
.|.+++.+|--..+ .....-|.++-.+|.+.|- .+.-.++++..++.|++-
T Consensus 149 tAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~------------- 215 (249)
T 3m0z_A 149 TAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSK------------- 215 (249)
T ss_dssp HHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSC-------------
T ss_pred HHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCe-------------
Confidence 55566665532211 2345667888888888774 356666777777766431
Q ss_pred cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.=.+.|+++|+---..-++++..++|..+++
T Consensus 216 ----viPHIYssIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 216 ----IIPHIYSSIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp ----BCCBCCGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred ----ecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 1225899999887777899999999988865
No 313
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=27.20 E-value=90 Score=21.36 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCC
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK 48 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~ 48 (153)
+..+.+..++..|.+.|++|....|+.-. +..+..+.+.|.-
T Consensus 127 n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~-l~~~~~l~~~Gl~ 168 (282)
T 2y7e_A 127 NHPADIIRLAEAFKQYNVVPEVEVYESGM-VDAVARLIKKGII 168 (282)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECSHHH-HHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEECHHH-HHHHHHHHHcCCC
Confidence 44567888889999999999888888543 3335556666654
No 314
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=26.60 E-value=37 Score=22.88 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCC-------CccHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 047010 34 EAYEMLMNVKNDGL-------KPDVYTYTAVMDGFCKVGR---------SNEVMELLNEAIERGVTPNVVTLIHLHNVID 97 (153)
Q Consensus 34 ~a~~~~~~m~~~g~-------~~~~~t~~~ll~~~~~~g~---------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~ 97 (153)
.|.+++.+|--..+ .....-|.++..+|.+.|- .+.-.++++..++.|++-
T Consensus 172 tAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~------------- 238 (275)
T 3m6y_A 172 TAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQ------------- 238 (275)
T ss_dssp HHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSC-------------
T ss_pred HHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCe-------------
Confidence 45556665532211 2344567778888888763 355666677777766431
Q ss_pred cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
.=.+.|+++|+---..-++++..++|..+++
T Consensus 239 ----viPHIYsSIIDk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 239 ----VIPHVYSSIIDKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp ----BCCEECGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred ----ecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 1225899999887777789999999988865
No 315
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.29 E-value=70 Score=16.06 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010 105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~ 138 (153)
.+...++.+ ..|+++.|...+-.|...+..|+
T Consensus 26 ~~I~~vL~a--~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 26 EVIRSVLEA--QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHTT--TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHcCcCCCCCCC
Confidence 344444444 46799999999999988887776
No 316
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=26.27 E-value=1.7e+02 Score=20.57 Aligned_cols=123 Identities=10% Similarity=0.029 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhchHH-------------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-
Q 047010 7 DFFEARKVIDYMFDNGYHPNVTTYTIL-------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR- 66 (153)
Q Consensus 7 ~~~~a~~~~~~m~~~~~~~~~~~~~~l-------------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~- 66 (153)
++++++.+++.+.+.. +-|...|+-- ++++.++++.+.. ..|-..|+---..+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 4566777777776643 3344444321 3555555555543 3477778777777777765
Q ss_pred ------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-C----------------------------------------
Q 047010 67 ------SNEVMELLNEAIERGVTPNVVTLIHLHNVIDI-G---------------------------------------- 99 (153)
Q Consensus 67 ------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~-~---------------------------------------- 99 (153)
++++++.+++..... +-|...+...+.+... +
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 677888887776543 2333333222222211 1
Q ss_pred -CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010 100 -HIPRTITFNNVIQALCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 100 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 132 (153)
..++...+.-+.+.|...|+.++|..+++.+.+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 025667888899999999999999999999864
No 317
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=25.82 E-value=78 Score=20.48 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=8.4
Q ss_pred HHHHHHHHHcCCCcc
Q 047010 36 YEMLMNVKNDGLKPD 50 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~ 50 (153)
.++++.+.+.|..++
T Consensus 49 ~~~v~~Ll~~g~~~~ 63 (261)
T 2xai_A 49 LSCVKILLKHGAQVN 63 (261)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455566666665544
No 318
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=25.13 E-value=1.3e+02 Score=18.72 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhchHH-HHHHHHHHHHHcCCCccH----HHHHHHHHH---HHhcCCHHHHHHHHHHH
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKNDGLKPDV----YTYTAVMDG---FCKVGRSNEVMELLNEA 77 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~a~~~~~~m~~~g~~~~~----~t~~~ll~~---~~~~g~~~~a~~l~~~m 77 (153)
++++.-..+.....+.|- |... +.| ...++|.+.... ++|+. ..|--|.-- +-..+++++|.++|+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~-p~~d--~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSV-PLSD--ALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp CSHHHHHHHHHHHHHHTC-SCCH--HHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC-Cchh--hHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455555555555555553 3222 333 334555555443 33432 112111111 12237889999999998
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010 78 IERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147 (153)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~ 147 (153)
++.+-.. ...|-..-.=-.+.|+.+.|..++......+..| ...+.+.|.
T Consensus 87 ~~~hKkF-------------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 87 RANCKKF-------------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHCTTB-------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHhHHH-------------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 7754333 2355555555668999999999999988887666 444444444
No 319
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=24.35 E-value=63 Score=19.20 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHcCCCchH
Q 047010 66 RSNEVMELLNEAIERGVTPNV 86 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~~~~~~~ 86 (153)
+++...+++++|...|.+|..
T Consensus 90 ~~~~i~~Lmq~mQ~~G~PP~e 110 (126)
T 2wl8_A 90 RFEMVLDLMQQLQDLGHPPKE 110 (126)
T ss_dssp HHHHHHHHHHHHHHTCCCCGG
T ss_pred HHHHHHHHHHHHHHcCCCcHH
Confidence 456788899999999988864
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.34 E-value=1.2e+02 Score=18.16 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCC
Q 047010 40 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLIHLHNVIDIGHI 101 (153)
Q Consensus 40 ~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~~~~~~~~~~~~~ 101 (153)
..+++.|.+++. --..+++.+...+..-.|.++++.+.+.+...+. .+|+.+..+.+.|..
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345666765543 3345566666667778899999999887654444 456888888887753
No 321
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=23.83 E-value=91 Score=16.53 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.8
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010 108 NNVIQALCGVGKIDKALLLLFLMYEHGKI 136 (153)
Q Consensus 108 ~~li~~~~~~g~~~~a~~~~~~m~~~~v~ 136 (153)
.++|.--.+.| +..|.++.+.|.+.|+.
T Consensus 27 ~S~lQR~lrIG-YnRAArlid~lE~~GiV 54 (73)
T 2ve8_A 27 ISAVQRKLKIG-YNRAARMIEAMEMAGVV 54 (73)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHccC-hHHHHHHHHHHHHCCcC
Confidence 47788888887 89999999999999874
No 322
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=23.59 E-value=92 Score=21.57 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010 37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG 81 (153)
Q Consensus 37 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 81 (153)
+++..+.+.|+.|....+.=++..+++.=.++.+..+++.+...|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 345556667777777777777777777777778888888777765
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.46 E-value=1.4e+02 Score=18.57 Aligned_cols=87 Identities=10% Similarity=0.009 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010 36 YEMLMNVKNDGLKPDVYT--YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113 (153)
Q Consensus 36 ~~~~~~m~~~g~~~~~~t--~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 113 (153)
.++++.+.+.|..++... -.+.+...+..|+.+-+..+++.+.+.|..++.... ....|..-.+. +..
T Consensus 134 ~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~---------~~~~~~~g~tp-l~~ 203 (232)
T 2rfa_A 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL---------ELVPNNQGLTP-FKL 203 (232)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCG---------GGCCCTTSCCH-HHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhh---------hccCCCCCCCH-HHH
Confidence 466667777776654322 123444556677888777777877777754420000 00122333333 445
Q ss_pred HHccCcHHHHHHHHHHHHH
Q 047010 114 LCGVGKIDKALLLLFLMYE 132 (153)
Q Consensus 114 ~~~~g~~~~a~~~~~~m~~ 132 (153)
.++.|+.+-+..+++.=..
T Consensus 204 A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 204 AGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCcc
Confidence 5567888777777765544
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.35 E-value=1.4e+02 Score=20.41 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010 90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP 137 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p 137 (153)
+++..+.+.+..++...-.+.+...+..|+.+-+..+++.-.+.|..|
T Consensus 67 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 67 DTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 444444554544444222334455557788888888877755444443
No 325
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=23.28 E-value=1e+02 Score=20.56 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=8.7
Q ss_pred HHHHHccCcHHHHHHHH
Q 047010 111 IQALCGVGKIDKALLLL 127 (153)
Q Consensus 111 i~~~~~~g~~~~a~~~~ 127 (153)
+...+..|+.+-+..++
T Consensus 128 L~~A~~~~~~~~v~~Ll 144 (351)
T 3utm_A 128 LHEAASKNRVEVCSLLL 144 (351)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444567765544444
No 326
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.28 E-value=99 Score=16.73 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=15.4
Q ss_pred cCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010 117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD 150 (153)
Q Consensus 117 ~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~ 150 (153)
....+.|..+++.+..+| ...|..+++++.
T Consensus 49 ~t~~~kar~Lld~l~~kG----~~af~~F~~aL~ 78 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD----NDSYVSFYNALL 78 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcC----HHHHHHHHHHHH
Confidence 345555666665555444 444555555443
No 327
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=23.26 E-value=65 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 047010 53 TYTAVMDGFCKVGRSNEVMELLNEA 77 (153)
Q Consensus 53 t~~~ll~~~~~~g~~~~a~~l~~~m 77 (153)
--|.|++-|...|++..|.++++.+
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rl 60 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKI 60 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHC
Confidence 3488999999999999999999974
No 328
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.18 E-value=74 Score=21.19 Aligned_cols=68 Identities=24% Similarity=0.250 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 72 ~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
.-++...++|++|....-.+ .|-....+.+..+. ..|+-+.+...+++....|..|.......++.++
T Consensus 14 ~~~~~~~~~G~~i~~~~~~l---------~p~~~~~~~l~~al-~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l 81 (258)
T 2i2x_B 14 TRYNVALEKALTPEEAAEEL---------YPKDELIYPIAKAI-FEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGM 81 (258)
T ss_dssp CCHHHHHSCSSCHHHHHHHH---------SCCCTTSHHHHHHH-HTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHh---------CCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33455556777776553211 12223445555554 4678888888888888877777655555555544
No 329
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.06 E-value=1.4e+02 Score=18.47 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHcCCCchHH
Q 047010 66 RSNEVMELLNEAIERGVTPNVV 87 (153)
Q Consensus 66 ~~~~a~~l~~~m~~~~~~~~~~ 87 (153)
..++.++..-++.+.|..|+..
T Consensus 29 ~~eev~~~i~klakkG~~pSqI 50 (158)
T 3j20_Q 29 TVEEIENLVVKLRKEGYSTAMI 50 (158)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHh
Confidence 4578888888888899888744
No 330
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.04 E-value=2.1e+02 Score=20.43 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC----CCchHHHH------------HHHHHHHHcCCCCcHhhHHHHHH
Q 047010 52 YTYTAVMDGFCKVGR---SNEVMELLNEAIERG----VTPNVVTL------------IHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 52 ~t~~~ll~~~~~~g~---~~~a~~l~~~m~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
..-..++...|..|+ .++|.++|+.....+ ++||.... +.+.+..... .+..-=+.++.
T Consensus 198 ~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~~~~~~~l~~~y~~s--~~~~ek~~ll~ 275 (419)
T 3rjo_A 198 MLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFS--LSSTEKSQIEF 275 (419)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTSHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCCHHHHHHHHHHHhcC--CCHHHHHHHHH
Confidence 334567777778775 678888998877642 67776533 2222222221 23333556777
Q ss_pred HHHccCcHHHHHHHHHHHHHCCC
Q 047010 113 ALCGVGKIDKALLLLFLMYEHGK 135 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~~~v 135 (153)
+++...+.+...+++.......+
T Consensus 276 aL~~s~d~~ll~~~L~~~l~~~~ 298 (419)
T 3rjo_A 276 ALCRTQNKEKLQWLLDESFKGDK 298 (419)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTSS
T ss_pred HcCCCCCHHHHHHHHHHHhCCCC
Confidence 77777777777777777665543
No 331
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.87 E-value=1.5e+02 Score=18.69 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=39.8
Q ss_pred CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ 151 (153)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~ 151 (153)
|....++-++..++.-.-++.+...+.+....|. .+..+|---++.++|
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4556789999999999999999999999998885 567777766666554
No 332
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=22.65 E-value=1.2e+02 Score=17.45 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH--HHHHHHHHH-CCCCCCHHHHHHHH
Q 047010 88 TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA--LLLLFLMYE-HGKIPSRTLYDTLI 146 (153)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a--~~~~~~m~~-~~v~p~~~~~~~li 146 (153)
.|+.+.++...|...|..|...-+ .+.|.++++ ..++.++.+ ..-..|...|.-++
T Consensus 58 If~ai~~L~~~g~piD~vtv~~~L---~~~~~l~~~GG~~yL~~L~~~~ps~ani~~Ya~iV 116 (119)
T 1b79_A 58 IFTEMARLQESGSPIDLITLAESL---ERQGQLDSVGGFAYLAELSKNTPSAANISAYADIV 116 (119)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHH---HTTTTHHHHTHHHHHHHHHHHSCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH---hccCchhhcCcHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456667777777777777555444 456666553 445555544 33344677776555
No 333
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.63 E-value=26 Score=18.43 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHcCCCCcHhhHH
Q 047010 63 KVGRSNEVMELLNEAIERGV---TPNVVTLIHLHNVIDIGHIPRTITFN 108 (153)
Q Consensus 63 ~~g~~~~a~~l~~~m~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (153)
+.|.-+-+--.+.++.+.|+ .|+.-+-+-+.....-.+-|+++||+
T Consensus 23 ~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TITw~ 71 (71)
T 2eo2_A 23 VNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71 (71)
T ss_dssp SSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTCCCC
T ss_pred CCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccceeeC
Confidence 33444445556666767664 35555556677777777777777763
No 334
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=22.61 E-value=2.1e+02 Score=20.18 Aligned_cols=139 Identities=6% Similarity=-0.008 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChh-hchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-C-CHHHH
Q 047010 6 NDFFEARKVIDYMFDNGYHPNVT-TYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-G-RSNEV 70 (153)
Q Consensus 6 ~~~~~a~~~~~~m~~~~~~~~~~-~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~-g-~~~~a 70 (153)
...++|+.+++.+...+ |+.. .|+.- ++++.++.+.... +-+-..|+---..+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 34567888888888753 4433 33321 7788888777653 23556677666666665 6 77888
Q ss_pred HHHHHHHHHcCCCchHHHH----HHHHHHHHc--------------------CCCCcHhhHHHHHHHHHccCc-------
Q 047010 71 MELLNEAIERGVTPNVVTL----IHLHNVIDI--------------------GHIPRTITFNNVIQALCGVGK------- 119 (153)
Q Consensus 71 ~~l~~~m~~~~~~~~~~~~----~~~~~~~~~--------------------~~~~~~~~~~~li~~~~~~g~------- 119 (153)
+++++++.+.. +-+..++ -++..+... ...-|...|+-.-..+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 88888877543 2222222 111111110 112355677777777777665
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 120 ~~~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
++++++.+++..+.. .-|.+.|..+-..+
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFL 252 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 788888888876643 23666665544333
No 335
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.52 E-value=65 Score=18.41 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=16.3
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~ 79 (153)
.++.|++++|.+++++-.+
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 6799999999999988654
No 336
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.41 E-value=66 Score=18.32 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=16.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 047010 61 FCKVGRSNEVMELLNEAIE 79 (153)
Q Consensus 61 ~~~~g~~~~a~~l~~~m~~ 79 (153)
.++.|++++|.+++++-.+
T Consensus 28 ~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 6799999999999988654
No 337
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.07 E-value=1.8e+02 Score=19.28 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=56.8
Q ss_pred HHHHHHHHH-HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010 34 EAYEMLMNV-KNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ 112 (153)
Q Consensus 34 ~a~~~~~~m-~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 112 (153)
+..+++.+. .+.|+..+......+.. .-.|++..+..+++.....+-..+.. .+..+.. .+.......++.
T Consensus 165 ~~~~~l~~~~~~~~~~i~~~~l~~l~~--~~~G~~r~~~~~l~~~~~~~~~i~~~---~v~~~~~---~~~~~~~~~l~~ 236 (319)
T 2chq_A 165 AMKKRLLEICEKEGVKITEDGLEALIY--ISGGDFRKAINALQGAAAIGEVVDAD---TIYQITA---TARPEEMTELIQ 236 (319)
T ss_dssp HHHHHHHHHHHTTCCCBCHHHHHHHHH--TTTTCHHHHHHHHHHHHHSSSCBCHH---HHHHHTT---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHC---CCCHHHHHHHHH
Confidence 334444443 34567667766666663 33789999999988876643333322 2222221 122233445566
Q ss_pred HHHccCcHHHHHHHHHHHHH-CCCCCC
Q 047010 113 ALCGVGKIDKALLLLFLMYE-HGKIPS 138 (153)
Q Consensus 113 ~~~~~g~~~~a~~~~~~m~~-~~v~p~ 138 (153)
+.. .|+++.|.+++.++.. .|..|.
T Consensus 237 ~~~-~~~~~~a~~~l~~l~~~~g~~~~ 262 (319)
T 2chq_A 237 TAL-KGNFMEARELLDRLMVEYGMSGE 262 (319)
T ss_dssp HHH-HTCHHHHHHHHHHHHHHSCCCHH
T ss_pred HHH-hCCHHHHHHHHHHHHHHcCCCHH
Confidence 554 4789999999999876 787653
No 338
>3a54_A Protein-glutaminase; mutant structure like A substrate-enzyme complex, hydrolase; 1.50A {Chryseobacterium proteolyticum} PDB: 3a55_A 3a56_A*
Probab=21.94 E-value=1.7e+02 Score=19.88 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHc---CC-------CccHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCc
Q 047010 34 EAYEMLMNVKND---GL-------KPDVYTYTAVMDGFCKV-------------------GRSNEVMELLNEAIERGVTP 84 (153)
Q Consensus 34 ~a~~~~~~m~~~---g~-------~~~~~t~~~ll~~~~~~-------------------g~~~~a~~l~~~m~~~~~~~ 84 (153)
+....|...+.+ |. -||..|++.|-..+-.. |....|..+-..+.+.|+.|
T Consensus 95 ~d~~yfk~~~sk~vkg~~~~l~s~IP~~~T~~~Lf~~i~n~rd~r~~asq~~I~F~YpdDGCyARAHLM~~~l~~~Gi~p 174 (305)
T 3a54_A 95 EDVRYFKTILTKEVKGQTNKLASVIPDVATLNSLFNQIKNQSCGTSTASSPCITFRYPVDGCYARAHKMRQILMNNGYDC 174 (305)
T ss_dssp HHHHHHHHHSBSCCCCCSSCCBSEESCHHHHHHHHHHHHTTBTTSTTCCSSCBCTTCTTSCHHHHHHHHHHHHHHTTBCC
T ss_pred ccchhhhhhcchhhcCCCCcccccCCchhhHHHHHHHHhhhhcchhhccCCCccccCCcccHHHHHHHHHHHHHHcCCCh
Confidence 556666666653 22 27889998888776543 56778888888888888877
Q ss_pred h
Q 047010 85 N 85 (153)
Q Consensus 85 ~ 85 (153)
+
T Consensus 175 ~ 175 (305)
T 3a54_A 175 E 175 (305)
T ss_dssp E
T ss_pred h
Confidence 5
No 339
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.45 E-value=1.4e+02 Score=17.95 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCchHHH-----HHHHHHHHHc
Q 047010 34 EAYEMLMNVKNDGLKPDVY---TYTAVMDGFCKVGRSNEVMELLNEAIE-------RGVTPNVVT-----LIHLHNVIDI 98 (153)
Q Consensus 34 ~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~g~~~~a~~l~~~m~~-------~~~~~~~~~-----~~~~~~~~~~ 98 (153)
.-.++++.+.+.|..++.. .++.+ ...+..|+.+-+..+++.-.. .|..|=... .+++..+.+.
T Consensus 50 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 50 NDIEIAKALIDRGADINLQNSISDSPY-LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128 (201)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 3356777777777766543 23333 344556776665555533110 011111111 1566666666
Q ss_pred C-CCC---cHhhHHHHHHHHHccCc-HHHHHHHHHHHHHCCCCCC
Q 047010 99 G-HIP---RTITFNNVIQALCGVGK-IDKALLLLFLMYEHGKIPS 138 (153)
Q Consensus 99 ~-~~~---~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~v~p~ 138 (153)
+ ..+ |..-++.+..+.. .++ ...-.++.+.+.+.|..|+
T Consensus 129 g~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 129 GREDIDFQNDFGYTALIEAVG-LREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CCCCTTCCCTTSCCHHHHHHH-SSCCSHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcCCCCCCCCCHHHHHHH-hccchhhHHHHHHHHHHCCCCCC
Confidence 5 333 3333445544443 333 2223455555556665554
No 340
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.00 E-value=2.4e+02 Score=20.40 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCchHHHH--------------------HHHHH----HHHcCCCCcH--h
Q 047010 54 YTAVMDGFCKVGRSNEVMELLNEAIER--GVTPNVVTL--------------------IHLHN----VIDIGHIPRT--I 105 (153)
Q Consensus 54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~~~--------------------~~~~~----~~~~~~~~~~--~ 105 (153)
...|...|-..|++.+|.++++.+... |......-. ..+.. .......|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788899999999999988653 222211111 11111 2222233333 3
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010 106 TFNNVIQALCGVGKIDKALLLLFLMY 131 (153)
Q Consensus 106 ~~~~li~~~~~~g~~~~a~~~~~~m~ 131 (153)
-|...+..+...++|.+|...|.+.-
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56777777778888888888777764
No 341
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.98 E-value=87 Score=16.20 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=10.5
Q ss_pred ChHHHHHHHHHHHHCCCC
Q 047010 7 DFFEARKVIDYMFDNGYH 24 (153)
Q Consensus 7 ~~~~a~~~~~~m~~~~~~ 24 (153)
+.+.|..+...+...|++
T Consensus 19 ~~~~A~~~~~~L~~~g~~ 36 (79)
T 1x60_A 19 VKANADSLASNAEAKGFD 36 (79)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhCCCC
Confidence 445566666666665543
No 342
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.90 E-value=2.5e+02 Score=20.44 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh---hHHHHHHHHHccCcHHH
Q 047010 62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI---TFNNVIQALCGVGKIDK 122 (153)
Q Consensus 62 ~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 122 (153)
.+.++.+.|+..+.+|.+.|..|....-.++....+.--..|.. .-++...++-+.|.++.
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~ 329 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEG 329 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHH
Confidence 45689999999999999999988876666655555432223332 34455667777776664
No 343
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=20.86 E-value=86 Score=16.43 Aligned_cols=17 Identities=18% Similarity=0.127 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHCCCC
Q 047010 8 FFEARKVIDYMFDNGYH 24 (153)
Q Consensus 8 ~~~a~~~~~~m~~~~~~ 24 (153)
.+.|..+...+...|++
T Consensus 20 ~~~A~~l~~~L~~~G~~ 36 (81)
T 1uta_A 20 AEQAETVRAQLAFEGFD 36 (81)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 44555555665555543
No 344
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=20.26 E-value=1.2e+02 Score=16.44 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.2
Q ss_pred HHHHHHHHcCCC
Q 047010 37 EMLMNVKNDGLK 48 (153)
Q Consensus 37 ~~~~~m~~~g~~ 48 (153)
++++.+.+.|..
T Consensus 49 ~~~~~Ll~~g~~ 60 (126)
T 1n0r_A 49 EVVKLLLEAGAD 60 (126)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 344444444443
No 345
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.18 E-value=63 Score=20.34 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCCCcHhh--HHHHHHHHHccCcHHHHHHH
Q 047010 90 IHLHNVIDIGHIPRTIT--FNNVIQALCGVGKIDKALLL 126 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~ 126 (153)
+++..+.+.|..++... -.+.+...++.|+.+-+..+
T Consensus 158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 196 (237)
T 3b7b_A 158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196 (237)
T ss_dssp HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHH
Confidence 55556666665554321 12334444556666544433
No 346
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=20.10 E-value=1.3e+02 Score=16.72 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010 122 KALLLLFLMYEHGKIPSRTLYDTLIKKL 149 (153)
Q Consensus 122 ~a~~~~~~m~~~~v~p~~~~~~~li~~~ 149 (153)
.|.+.|.++++.+..|+...+..|..+.
T Consensus 35 Ga~~ay~rL~~~~~~~c~~~L~aL~gAi 62 (93)
T 3bqs_A 35 GSKEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5777888888888888888877775543
Done!