BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047012
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 54/55 (98%)
Query: 9 VWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWT 63
VW+NTEDEILKAAVMKYGKNQW+RI+SLL RKSAKQCKARWYEWLDPSIKKTEW+
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 66
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 49/61 (80%)
Query: 56 SIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEP 115
S KKTEW+REE+EKLLHLAKLMPTQWRTIAPI+GRT +QCLE YE LLD A +D
Sbjct: 6 SGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDSGPSS 65
Query: 116 G 116
G
Sbjct: 66 G 66
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G + ED++++ V + G W RI+S L +S KQC+ RW+ LDP++ K WT EED
Sbjct: 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEED 62
Query: 68 EKLLHLAKLMPTQWRTIAPIV-GRTPSQCLERYEKLLDAACAKDENYE 114
E + + ++W IA ++ GRT + R+ + + + N++
Sbjct: 63 ETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHK 110
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G W ED+ + V KYG QW I+ L + KQC+ RW+ L+P +KK+ WT EED
Sbjct: 8 GPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEED 67
Query: 68 EKLLHLAKLMPTQWRTIAPIV-GRT 91
+ K++ +W IA ++ GRT
Sbjct: 68 RIIFEAHKVLGNRWAEIAKLLPGRT 92
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 55 PSIKKTEWTREEDEKLLHLAKLMPT-QWRTIAP-IVGRTPSQCLERYEKLLDAACAKDEN 112
P + K WT+EED+K++ L K T QW IA + GR QC ER+ L+ K
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSW 62
Query: 113 YEPGD 117
E D
Sbjct: 63 TEEED 67
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEK 69
W EDE LK V + G + W I++ L ++ QC+ RW + L+P + K WT+EED++
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQR 68
Query: 70 LLHLA-KLMPTQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGD 117
++ L K P +W IA + GR QC ER+ L+ K E D
Sbjct: 69 VIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G W ED+ + V KYG +W+ I+ L + KQC+ RW+ L+P +KKT WT EED
Sbjct: 59 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118
Query: 68 EKLLHLAKLMPTQWRTIAPIV-GRT 91
+ K + +W IA ++ GRT
Sbjct: 119 RIIYQAHKRLGNRWAEIAKLLPGRT 143
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 56 SIKKTEWTREEDEKLLHLAKLMPT-QWRTIAPIV-GRTPSQCLERYEKLLD 104
+ KT WTREEDEKL L + T W+ IA + RT QC R++K+L+
Sbjct: 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 53
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
Length = 105
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWT 63
M+ G W ED+ + V KYG +W+ I+ L + KQC+ RW+ L+P +KKT WT
Sbjct: 1 MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 64 REEDEKLLHLAKLMPTQWRTIAPIV-GRT 91
EED + K + +W IA ++ GRT
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRT 89
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G W ED+ + V KYG +W+ I+ L + KQC+ RW+ L+P +KKT WT EED
Sbjct: 28 GPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 87
Query: 68 EKLLHLAKLMPTQWRTIAPIV-GRT 91
+ K + +W IA ++ GRT
Sbjct: 88 RIIYQAHKRLGNRWAEIAKLLPGRT 112
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 33 ISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLL-HLAKLMPTQWRTIAP-IVGR 90
+ +++ ++ QC+ RW + L+P + K WT+EED++++ H+ K P +W IA + GR
Sbjct: 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGR 60
Query: 91 TPSQCLERYEKLLD 104
QC ER+ L+
Sbjct: 61 IGKQCRERWHNHLN 74
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
G W ED+ + V KYG +W+ I+ L + KQC+ RW+ L+P +KKT WT EED
Sbjct: 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 64
Query: 68 EKLLHLAKLMPTQWRTIAPIV-GRT 91
+ K + +W IA ++ GRT
Sbjct: 65 RIIYQAHKRLGNRWAEIAKLLPGRT 89
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 62 WTREEDEKLLHLA-KLMPTQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGD 117
WT+EED++++ L K P +W IA + GR QC ER+ L+ K E D
Sbjct: 7 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 64
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 14 EDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHL 73
EDE+LK AV ++G + W I++ ++A+QC+ RW +L PSI T WT EED L+
Sbjct: 18 EDEMLKRAVAQHGSD-WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQK 76
Query: 74 AKLMPTQWRTIAPIV-GRTPSQCLERY 99
+ QW IA GRT R+
Sbjct: 77 IQEYGRQWAIIAKFFPGRTDIHIKNRW 103
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In
Complex With Mre-1MRE-2r Dna
Length = 107
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 14 EDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67
ED L+ VM+YG W RIS L++ ++ +QC+ RW +++P+++ W+ EED
Sbjct: 8 EDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEED 61
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 59 KTEWTREEDEKLLHLA-KLMPTQWRTIAPI-VGRTPSQCLERYEKLLDAACAKD 110
K ++T EED KL L + W I+ + + R P QC ER+ ++ A D
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTD 54
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 57 IKKTEWTREEDEKLLHLAKLMPT-QWRTIAPIV-GRTPSQCLERYEKLLD 104
+ KT WTREEDEKL L + T W+ IA + RT QC R++K+L+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDP 55
W EDE LK V + G + W I++ L ++ QC+ RW + L+P
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 57 IKKTEWTREEDEKLLHLAKLMPT-QWRTIAPIV-GRTPSQCLERYEKLLD 104
+ KT WTREEDEKL L + T W+ IA + RT QC R++K+L+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDP 55
W EDE LK V + G + W I++ L ++ QC+ RW + L+P
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDP 55
G W ED+ L V KYG +W+ I+ L + KQC+ RW+ L+P
Sbjct: 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 59 KTEWTREEDEKLLHLA-KLMPTQWRTIAP-IVGRTPSQCLERYEKLLD 104
K WT+EED++L+ L K P +W IA + GR QC ER+ L+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDP 55
G W ED+ + V KYG +W+ I+ L + KQC+ RW+ L+P
Sbjct: 4 GPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 59 KTEWTREEDEKLLHLA-KLMPTQWRTIAP-IVGRTPSQCLERYEKLLD 104
K WT+EED++++ L K P +W IA + GR QC ER+ L+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDP 55
G W ED+ + V KYG +W+ I+ L + KQC+ RW+ L+P
Sbjct: 4 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 59 KTEWTREEDEKLLHLA-KLMPTQWRTIAP-IVGRTPSQCLERYEKLLD 104
K WT+EED++++ L K P +W IA + GR QC ER+ L+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARW 49
W + EDE L+A V ++G+ W ++S ++ +QC+ RW
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 59 KTEWTREEDEKLLHLAKLMPTQ-WRTIAP-IVGRTPSQCLERYEKLL 103
K +WT EEDE+L L + Q W+ +A RT QC R+ ++L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 60 TEWTREEDEKLLHLAKLMPT----QWRTIAPIV-GRTPSQCLERYEKLLDAACAK 109
T WT EE + L K P +W+ IA V GRT C++RY++L++ AK
Sbjct: 4 TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAK 58
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISS--LLVRKSAKQCKARW 49
W E E +KA V KYG+ WA IS V ++A K RW
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSL--LVRKSAKQCKARW 49
W E E +KA V KYG+ WA IS V ++A K RW
Sbjct: 17 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 58
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSL--LVRKSAKQCKARW 49
W E E +KA V KYG+ WA IS V ++A K RW
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSL--LVRKSAKQCKARW 49
W E E +KA V KYG+ WA IS V ++A K RW
Sbjct: 13 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 54
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 10 WKNTEDEILKAAVMKYGKNQWARISSL--LVRKSAKQCKARW 49
W E E +KA V KYG+ WA IS V ++A K RW
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 57 IKKTEWTREEDEKLLHLAKLMPTQWRTIAPIV-GRT 91
+KKT WT EED L K + +W IA ++ GRT
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRT 38
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 243 EELEGKRRVDIEAQLRRQDIAKNKIA--QRQDAPSAILQANKLNDPETVRKRSKL--MLP 298
+E+EGKR D+E +L N + + +D +Q L DP + L +P
Sbjct: 30 DEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMP 89
Query: 299 APQISDHELEEIAKMGYASDLIAGNEELTEGSGATRALLANYAQTPQ 345
P + ++++ D++ N + +G T A Y +TP+
Sbjct: 90 DPDFTVNDVKMCVGSRRMVDVMDVNTQ--KGIEMTMAQWTRYYETPE 134
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 57 IKKTEWTREEDEKLLHLAKLMPTQWRTIAPIV-GRT 91
+KKT WT EED + K + +W IA ++ GRT
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRT 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,141,911
Number of Sequences: 62578
Number of extensions: 497485
Number of successful extensions: 790
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 50
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)