Query 047012
Match_columns 400
No_of_seqs 432 out of 2300
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0050 mRNA splicing protein 100.0 6.4E-83 1.4E-87 648.4 18.3 383 1-396 1-384 (617)
2 PLN03091 hypothetical protein; 100.0 1.7E-28 3.7E-33 249.1 13.8 153 2-154 9-163 (459)
3 PLN03212 Transcription repress 100.0 2.9E-28 6.3E-33 232.5 11.7 111 1-111 19-131 (249)
4 KOG0048 Transcription factor, 99.9 2.6E-26 5.7E-31 219.6 9.6 103 56-189 6-112 (238)
5 PLN03212 Transcription repress 99.9 5.3E-25 1.2E-29 210.2 10.2 121 37-197 10-134 (249)
6 KOG0048 Transcription factor, 99.9 9.9E-25 2.1E-29 208.8 8.8 106 5-110 7-114 (238)
7 COG5147 REB1 Myb superfamily p 99.9 5.1E-24 1.1E-28 221.8 7.4 358 1-389 14-381 (512)
8 PLN03091 hypothetical protein; 99.9 3E-23 6.6E-28 211.0 11.6 110 54-196 9-122 (459)
9 KOG0049 Transcription factor, 99.8 1.7E-20 3.7E-25 196.4 12.5 146 5-181 303-455 (939)
10 KOG0049 Transcription factor, 99.8 3.4E-19 7.3E-24 186.8 8.1 153 3-187 249-409 (939)
11 PF13921 Myb_DNA-bind_6: Myb-l 99.6 8.6E-16 1.9E-20 116.7 6.5 60 10-70 1-60 (60)
12 PF13921 Myb_DNA-bind_6: Myb-l 99.4 1.4E-13 3E-18 104.6 3.4 50 62-111 1-51 (60)
13 PF00249 Myb_DNA-binding: Myb- 99.3 8.1E-13 1.8E-17 96.7 4.1 47 7-53 1-48 (48)
14 KOG0051 RNA polymerase I termi 99.3 2.6E-12 5.6E-17 136.1 7.7 103 6-110 383-514 (607)
15 KOG0051 RNA polymerase I termi 99.3 6.4E-12 1.4E-16 133.2 8.9 153 4-187 305-510 (607)
16 PF00249 Myb_DNA-binding: Myb- 99.2 6.3E-12 1.4E-16 92.0 3.2 45 59-103 1-48 (48)
17 KOG0050 mRNA splicing protein 99.1 1.7E-10 3.7E-15 119.8 6.6 100 57-187 5-106 (617)
18 smart00717 SANT SANT SWI3, AD 99.0 3.4E-10 7.4E-15 80.1 5.0 48 7-54 1-48 (49)
19 COG5147 REB1 Myb superfamily p 98.9 7.1E-10 1.5E-14 116.6 5.3 101 56-187 17-120 (512)
20 smart00717 SANT SANT SWI3, AD 98.9 8.3E-10 1.8E-14 78.1 3.3 46 59-104 1-48 (49)
21 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 2.8E-09 6.1E-14 74.4 4.6 45 9-53 1-45 (45)
22 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 5.4E-09 1.2E-13 72.9 3.3 43 61-103 1-45 (45)
23 KOG0457 Histone acetyltransfer 97.8 5.8E-05 1.3E-09 78.0 8.2 50 4-53 69-118 (438)
24 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00025 5.4E-09 54.5 4.5 47 7-53 3-54 (57)
25 TIGR01557 myb_SHAQKYF myb-like 96.8 0.0017 3.7E-08 49.9 4.0 46 59-104 3-55 (57)
26 COG5259 RSC8 RSC chromatin rem 96.8 0.0012 2.5E-08 69.2 3.9 46 6-52 278-323 (531)
27 KOG1279 Chromatin remodeling f 96.6 0.0017 3.8E-08 69.1 4.2 45 7-52 253-297 (506)
28 PF13325 MCRS_N: N-terminal re 96.6 0.0081 1.8E-07 57.0 8.2 96 9-106 1-129 (199)
29 KOG0457 Histone acetyltransfer 96.6 0.0016 3.5E-08 67.5 3.6 49 57-105 70-120 (438)
30 TIGR02894 DNA_bind_RsfA transc 96.5 0.0011 2.3E-08 60.9 1.6 51 58-108 3-60 (161)
31 COG5259 RSC8 RSC chromatin rem 95.8 0.009 2E-07 62.7 4.1 53 59-111 279-334 (531)
32 PF13837 Myb_DNA-bind_4: Myb/S 95.4 0.0052 1.1E-07 49.5 0.7 47 60-106 2-67 (90)
33 PF13837 Myb_DNA-bind_4: Myb/S 95.4 0.016 3.4E-07 46.7 3.4 45 8-52 2-63 (90)
34 TIGR02894 DNA_bind_RsfA transc 95.3 0.013 2.9E-07 53.8 2.9 49 5-54 2-56 (161)
35 KOG1279 Chromatin remodeling f 95.1 0.014 3.1E-07 62.3 3.1 44 59-102 253-297 (506)
36 PF13873 Myb_DNA-bind_5: Myb/S 95.0 0.022 4.9E-07 45.1 3.0 48 6-53 1-69 (78)
37 PF08914 Myb_DNA-bind_2: Rap1 94.6 0.026 5.7E-07 44.5 2.4 48 59-106 2-60 (65)
38 COG5114 Histone acetyltransfer 94.4 0.031 6.7E-07 56.5 3.0 47 8-54 64-110 (432)
39 PRK13923 putative spore coat p 94.2 0.02 4.4E-07 53.1 1.2 51 57-107 3-60 (170)
40 PRK13923 putative spore coat p 94.1 0.033 7.3E-07 51.7 2.4 49 5-54 3-57 (170)
41 PF08914 Myb_DNA-bind_2: Rap1 94.0 0.044 9.5E-07 43.3 2.6 49 8-56 3-60 (65)
42 PLN03142 Probable chromatin-re 93.7 0.5 1.1E-05 54.8 11.5 98 9-106 826-987 (1033)
43 COG5114 Histone acetyltransfer 92.6 0.072 1.6E-06 53.9 2.3 46 60-105 64-111 (432)
44 PF13873 Myb_DNA-bind_5: Myb/S 91.6 0.15 3.2E-06 40.4 2.6 48 59-106 2-72 (78)
45 COG5118 BDP1 Transcription ini 89.1 0.41 8.9E-06 49.6 3.9 43 8-51 366-408 (507)
46 PF09111 SLIDE: SLIDE; InterP 85.9 0.89 1.9E-05 39.9 3.6 48 4-51 46-108 (118)
47 KOG4167 Predicted DNA-binding 85.2 0.86 1.9E-05 50.7 3.8 45 7-52 619-663 (907)
48 KOG4282 Transcription factor G 84.2 0.8 1.7E-05 46.3 2.9 47 60-106 55-116 (345)
49 PF13325 MCRS_N: N-terminal re 83.6 2.5 5.5E-05 40.4 5.8 111 61-183 1-125 (199)
50 PF12776 Myb_DNA-bind_3: Myb/S 77.3 3.6 7.8E-05 33.3 4.0 44 9-52 1-61 (96)
51 KOG2656 DNA methyltransferase 73.8 4.6 0.0001 42.2 4.6 51 59-109 130-187 (445)
52 KOG1194 Predicted DNA-binding 73.2 3.8 8.2E-05 43.6 3.8 45 7-52 187-231 (534)
53 KOG4282 Transcription factor G 72.9 4.2 9.2E-05 41.1 4.1 45 8-52 55-112 (345)
54 COG5118 BDP1 Transcription ini 70.2 3.4 7.4E-05 43.1 2.7 43 60-102 366-409 (507)
55 PF13404 HTH_AsnC-type: AsnC-t 68.3 3.3 7.1E-05 29.8 1.5 38 65-102 3-41 (42)
56 PF09111 SLIDE: SLIDE; InterP 64.7 5.1 0.00011 35.2 2.3 50 56-105 46-112 (118)
57 PF11626 Rap1_C: TRF2-interact 62.1 5.1 0.00011 32.9 1.8 13 7-19 47-59 (87)
58 PRK11179 DNA-binding transcrip 60.1 7 0.00015 34.9 2.5 45 65-109 9-54 (153)
59 PF12776 Myb_DNA-bind_3: Myb/S 57.8 9.3 0.0002 30.9 2.6 45 61-105 1-64 (96)
60 PF13404 HTH_AsnC-type: AsnC-t 57.1 17 0.00036 26.1 3.5 38 13-51 3-40 (42)
61 PRK11169 leucine-responsive tr 55.3 8.4 0.00018 34.9 2.1 46 64-109 13-59 (164)
62 smart00595 MADF subfamily of S 53.2 9.1 0.0002 30.6 1.8 23 29-52 29-51 (89)
63 PF08281 Sigma70_r4_2: Sigma-7 48.7 18 0.00039 26.2 2.6 41 64-104 12-52 (54)
64 PLN03142 Probable chromatin-re 46.3 22 0.00047 41.8 4.1 46 6-51 925-982 (1033)
65 KOG4329 DNA-binding protein [G 41.6 29 0.00062 36.4 3.7 46 8-54 278-324 (445)
66 KOG4468 Polycomb-group transcr 41.1 19 0.00042 39.7 2.5 46 7-53 88-143 (782)
67 KOG2656 DNA methyltransferase 40.7 11 0.00024 39.5 0.6 48 4-52 127-180 (445)
68 PF01388 ARID: ARID/BRIGHT DNA 40.5 34 0.00075 27.6 3.4 39 16-54 39-89 (92)
69 KOG1878 Nuclear receptor coreg 40.1 16 0.00034 44.0 1.8 43 7-50 225-267 (1672)
70 PRK11179 DNA-binding transcrip 40.1 32 0.0007 30.7 3.4 44 12-56 8-51 (153)
71 PF11626 Rap1_C: TRF2-interact 36.0 27 0.00058 28.6 2.1 17 55-71 43-59 (87)
72 PF04545 Sigma70_r4: Sigma-70, 34.5 94 0.002 22.2 4.6 44 143-187 5-48 (50)
73 KOG1194 Predicted DNA-binding 34.2 83 0.0018 33.9 5.7 46 58-103 186-232 (534)
74 smart00595 MADF subfamily of S 34.0 15 0.00033 29.3 0.3 26 80-105 29-54 (89)
75 PRK11169 leucine-responsive tr 33.6 38 0.00083 30.6 2.9 45 12-57 13-57 (164)
76 KOG4167 Predicted DNA-binding 31.6 38 0.00083 38.4 2.9 45 59-103 619-664 (907)
77 smart00501 BRIGHT BRIGHT, ARID 31.0 40 0.00087 27.6 2.3 39 16-54 35-85 (93)
78 KOG2009 Transcription initiati 26.9 78 0.0017 35.0 4.2 45 58-102 408-453 (584)
79 COG1522 Lrp Transcriptional re 26.6 45 0.00099 29.0 2.1 46 65-110 8-54 (154)
80 smart00501 BRIGHT BRIGHT, ARID 25.1 59 0.0013 26.6 2.4 39 68-106 35-87 (93)
81 KOG4468 Polycomb-group transcr 25.0 72 0.0016 35.5 3.5 49 59-107 88-147 (782)
82 smart00344 HTH_ASNC helix_turn 25.0 60 0.0013 26.7 2.4 45 65-109 3-48 (108)
83 PF09905 DUF2132: Uncharacteri 25.0 60 0.0013 25.8 2.2 44 15-70 12-62 (64)
84 PF08281 Sigma70_r4_2: Sigma-7 24.5 1.4E+02 0.0031 21.4 4.1 42 143-185 11-52 (54)
85 smart00351 PAX Paired Box doma 23.1 4.6E+02 0.0099 22.7 7.7 74 3-78 11-92 (125)
86 PF04504 DUF573: Protein of un 22.8 2.5E+02 0.0055 23.6 5.8 68 8-76 5-94 (98)
87 PRK04217 hypothetical protein; 22.4 4.1E+02 0.0089 23.1 7.1 51 140-191 40-90 (110)
88 PF04545 Sigma70_r4: Sigma-70, 21.7 89 0.0019 22.3 2.5 39 66-104 8-46 (50)
89 PF09420 Nop16: Ribosome bioge 21.1 1.1E+02 0.0024 27.9 3.5 46 58-103 113-163 (164)
90 KOG2009 Transcription initiati 21.0 56 0.0012 36.1 1.8 44 6-50 408-451 (584)
91 PF10545 MADF_DNA_bdg: Alcohol 20.9 36 0.00079 26.2 0.3 26 80-105 28-55 (85)
No 1
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.4e-83 Score=648.41 Aligned_cols=383 Identities=54% Similarity=0.740 Sum_probs=359.3
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCC
Q 047012 1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQ 80 (400)
Q Consensus 1 Mr~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~ 80 (400)
|++.+|+|+|++.||++|+.+|++||.++|++|+++++.++++||+.||..||+|.+++..||.+||++|++++..++.+
T Consensus 1 ~~i~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~q 80 (617)
T KOG0050|consen 1 MRIEIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQ 80 (617)
T ss_pred CceEEecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 047012 81 WRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLAN 160 (400)
Q Consensus 81 W~~IA~l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~peskpa~pd~~d~teeE~emL~ea~arlgn 160 (400)
|..|+.++|||+.||.+||+++|+..+.......+.+|++ |++|+++|+|++++++||++||+++|.+||++|+++|+|
T Consensus 81 wrtIa~i~gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~r-Lk~gE~ePn~e~~~aRpd~~dmdEde~eMl~eaRarlaN 159 (617)
T KOG0050|consen 81 WRTIADIMGRTSQQCLERYNNLLDVYVSYHYHSEPYIDAK-LKEGEIEPNQETNPARPDGFDMDEDEGEMLSEARARLAN 159 (617)
T ss_pred cchHHHHhhhhHHHHHHHHHHHHHHHHhhhcccccccccc-cCCCcCCCccccccccCCcccchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998887777888999 999999999999999999999999999999999999999
Q ss_pred chhHHhcCcCCchHHHHHHHHHHHHhHHHHHHcCCChhHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCc
Q 047012 161 TRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRRGIDYNAEIPFEKKPPPGFFDVTDEDRPVELVSFPT 240 (400)
Q Consensus 161 ~w~kiAkrk~R~~~~~k~r~~a~LqKrrelk~aGi~~~~~~~k~~~~d~n~~ip~e~~p~~g~~d~~~e~~~~~~~~f~~ 240 (400)
++|++|+|+.|++++++.++.+.|||||||++|||.+..++++++.||||++|||++.|++|||||++|+.......|..
T Consensus 160 t~gkka~Rk~reK~l~e~~r~~~lqkrrelraagi~~~~rkr~~~~Idyn~~ipfek~p~~gfydts~e~~~i~~~~f~~ 239 (617)
T KOG0050|consen 160 TQGKKAKRKLREKQLEEPRRGAPLQKRRELRAAGILRTTRKRLSHLIDYNISIPFEKPPWNGFYDTSLEGYVILHNHFCS 239 (617)
T ss_pred ccchHHHHHHHHHHHhhccCCccchhHHHHHhhhhhHHhHhhhhccCCcccccccccCCcccccccchhhhhhhhhhhhH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999988888854
Q ss_pred -chHHhhccchhHHHHHHhhhHHHHHhHHhhhCcHHHHHHHhhcCCcchhcccCCCCCCCCCCChHHHHHHHHhchhhhh
Q 047012 241 -TIEELEGKRRVDIEAQLRRQDIAKNKIAQRQDAPSAILQANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDL 319 (400)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~lp~p~~~~~~~~~~~~~~~~~~~ 319 (400)
++..++|.+..+.|...++.|+++.+..++++.+.++.+... ..||+||+||+||||+.||+.+||+|.|++.
T Consensus 240 ~~~~~~eg~r~~d~E~~~r~~dk~~~~r~ke~~e~sa~~~~~~------~~Kr~klilpap~Is~~el~~~vK~g~A~~~ 313 (617)
T KOG0050|consen 240 VDIKVSEGLRVIDDEGSARTSDKEGVSREREHEEISAFIPDLG------SYKRDKLILPAPDISWRELRLFVKFGSALLR 313 (617)
T ss_pred HHHHHhhhhhccccchhhhccccccchhhhhcchhhhhhhhcc------hhccccccCCCCcccHHHHHHHHhcccHHHH
Confidence 688899999999999999999988888888888888766543 6899999999999999999999999999999
Q ss_pred hhcccccccCchhhHHhhhcccCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 047012 320 IAGNEELTEGSGATRALLANYAQTPQRGMTPSRTPQRTPAGKGDAVMMEAENLARMRESQTPLLGGENPELHPSDFS 396 (400)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~d~~~~ea~n~~~~~~~~t~l~g~~n~~l~~~~~~ 396 (400)
++... . .+ .....||++|+.+ +.+++.||| ++|+...|+|+.||||++++++++|||+||.|+|||+|+|+
T Consensus 314 ~R~~~-~-T~-~~~~~ll~dy~~r--~~av~~rt~-~~~~lk~d~~~ieaqn~~~~~~tk~~l~G~~~~~lh~S~~~ 384 (617)
T KOG0050|consen 314 SRFIQ-I-TK-VYGIRLLKDYIFR--NLAVDCRTK-VKDRLKDDVNKIEAQNSTRRRSTKELLEGDYGSKLHRSCRG 384 (617)
T ss_pred HHHHH-h-cc-chhhhHHHhhhhh--ccccccccc-cCccccchHHHHHHHHHHhhcCccccccCCCCCCcCcccCC
Confidence 98764 2 22 2348899999864 457789997 68887789999999999999999999999999999999986
No 2
>PLN03091 hypothetical protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=249.07 Aligned_cols=153 Identities=21% Similarity=0.462 Sum_probs=130.0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc-ccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCC
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQ 80 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~-~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~ 80 (400)
+..+++|+||++||++|+.+|.+||.++|..||..++ +|+++||++||.++|+|.+++++||+|||++|+++++.+|++
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK 88 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence 5678999999999999999999999999999999885 899999999999999999999999999999999999999999
Q ss_pred cccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 047012 81 WRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEA 154 (400)
Q Consensus 81 W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~peskpa~pd~~d~teeE~emL~ea 154 (400)
|..||. ++|||+.+|++||+.+|+..+...........+..-.....+..|..+++.++...+...|-+||..+
T Consensus 89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~~d~~p~~~~~~~~~s~~~~~el~~~~~~ 163 (459)
T PLN03091 89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLLKAD 163 (459)
T ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccccccCCccccccccchhhhhhhhhhhhhh
Confidence 999999 89999999999999999987765432222222222222345566777777888878888888888775
No 3
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.95 E-value=2.9e-28 Score=232.50 Aligned_cols=111 Identities=29% Similarity=0.591 Sum_probs=105.3
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHh-cccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCC
Q 047012 1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLL-VRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPT 79 (400)
Q Consensus 1 Mr~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L-~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~ 79 (400)
|+..+|+|+||+|||++|+.+|.+||.++|..||..+ ++|+++||++||.++|+|.+++++||.|||++|++++..+|+
T Consensus 19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn 98 (249)
T PLN03212 19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN 98 (249)
T ss_pred ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence 4678999999999999999999999988999999998 599999999999999999999999999999999999999999
Q ss_pred Ccccccc-cCCCChHHHHHHHHHHHhHhhhcCC
Q 047012 80 QWRTIAP-IVGRTPSQCLERYEKLLDAACAKDE 111 (400)
Q Consensus 80 ~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~ 111 (400)
+|..||. ++|||..+|++||+.+|+..+.+..
T Consensus 99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence 9999999 8999999999999999998876543
No 4
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.93 E-value=2.6e-26 Score=219.64 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=97.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cC-CCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 56 SIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IV-GRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPE 132 (400)
Q Consensus 56 ~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~-GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~pe 132 (400)
.+.+|+||+|||++|+.+|+.|| .+|..|++ +. ||++++||.||.|||+|.++++.
T Consensus 6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~--------------------- 64 (238)
T KOG0048|consen 6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGN--------------------- 64 (238)
T ss_pred cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCC---------------------
Confidence 34579999999999999999999 68999999 65 89999999999999999999987
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhcC-cCCchHHHHHHHHHHHHhHHH
Q 047012 133 SKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKR-KAREKQLEEARRLASLQKRRE 189 (400)
Q Consensus 133 skpa~pd~~d~teeE~emL~ea~arlgn~w~kiAkr-k~R~~~~~k~r~~a~LqKrre 189 (400)
||+||+++|.++|+.|||+|+.||++ +|||+|.+||+|++.|+||..
T Consensus 65 ----------fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 65 ----------FSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred ----------CCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999988843
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.92 E-value=5.3e-25 Score=210.22 Aligned_cols=121 Identities=25% Similarity=0.403 Sum_probs=106.8
Q ss_pred hcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-c-CCCChHHHHHHHHHHHhHhhhcCCCC
Q 047012 37 LVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-I-VGRTPSQCLERYEKLLDAACAKDENY 113 (400)
Q Consensus 37 L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l-~GRT~~QCr~Rw~~lL~~~i~k~~~~ 113 (400)
++.|++.-|. .+.+++++||+|||++|+.+|+.|| .+|..||. + +|||++|||+||.++|+|.+++++
T Consensus 10 ~~~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgp-- 80 (249)
T PLN03212 10 VSKKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGG-- 80 (249)
T ss_pred CCCCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCC--
Confidence 4455555443 3568899999999999999999999 68999999 5 589999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhcC-cCCchHHHHHHHHHHHHhHHHHHH
Q 047012 114 EPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKR-KAREKQLEEARRLASLQKRRELKA 192 (400)
Q Consensus 114 ~~~~d~~~Lr~gei~p~peskpa~pd~~d~teeE~emL~ea~arlgn~w~kiAkr-k~R~~~~~k~r~~a~LqKrrelk~ 192 (400)
||++|+++|++++..+||+|++||+. +||+++.++|||+..|+|+ ++.
T Consensus 81 -----------------------------WT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~--l~r 129 (249)
T PLN03212 81 -----------------------------ITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK--LLR 129 (249)
T ss_pred -----------------------------CChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHH--HHh
Confidence 99999999999999999999999999 9999999999999999776 455
Q ss_pred cCCCh
Q 047012 193 AGIDT 197 (400)
Q Consensus 193 aGi~~ 197 (400)
.||..
T Consensus 130 ~~i~p 134 (249)
T PLN03212 130 QGIDP 134 (249)
T ss_pred cCCCC
Confidence 66653
No 6
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.91 E-value=9.9e-25 Score=208.78 Aligned_cols=106 Identities=25% Similarity=0.551 Sum_probs=101.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc-ccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCccc
Q 047012 5 IKGGVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRT 83 (400)
Q Consensus 5 lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~-~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~ 83 (400)
+.+|+||+|||++|+.+|.+||.++|..|+..++ +|+.++||.||.+||+|.+++|.||+|||..|++++..+|++|+.
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~ 86 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL 86 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence 4469999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccc-cCCCChHHHHHHHHHHHhHhhhcC
Q 047012 84 IAP-IVGRTPSQCLERYEKLLDAACAKD 110 (400)
Q Consensus 84 IA~-l~GRT~~QCr~Rw~~lL~~~i~k~ 110 (400)
||. +||||++.+++.|+..|...+...
T Consensus 87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~ 114 (238)
T KOG0048|consen 87 IAGRLPGRTDNEVKNHWNTHLKKKLLKM 114 (238)
T ss_pred HHhhCCCcCHHHHHHHHHHHHHHHHHHc
Confidence 999 999999999999999998877654
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.89 E-value=5.1e-24 Score=221.78 Aligned_cols=358 Identities=28% Similarity=0.320 Sum_probs=253.8
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCC
Q 047012 1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQ 80 (400)
Q Consensus 1 Mr~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~ 80 (400)
|...+++|.|+..||+.|+.+|+.||.++|+.||+.|..++++||+.||+++++|.+++..|+.+||..|+++..++|.+
T Consensus 14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ 93 (512)
T COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93 (512)
T ss_pred ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Q 047012 81 WRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLA 159 (400)
Q Consensus 81 W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~peskpa~pd~~d~teeE~emL~ea~arlg 159 (400)
|+.|+. +.|||+.+|.+||.+.+...... ..........-+.++|..+..+..|+..+++..+.+++..+..++.
T Consensus 94 wstia~~~d~rt~~~~~ery~~~~~~~~s~----~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~ 169 (512)
T COG5147 94 WSTIADYKDRRTAQQCVERYVNTLEDLSST----HDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLR 169 (512)
T ss_pred hhhhccccCccchHHHHHHHHHHhhhhhcc----ccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHH
Confidence 999999 55699999999999999876651 1123345567789999999999999999999999999999999999
Q ss_pred CchhHHhcCcCCchHHHHHHHHHHHHhHHHHHHcCCChhHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCcccC--CC
Q 047012 160 NTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRRGIDYNAEIPFEKKPPPGFFDVTDEDRPVEL--VS 237 (400)
Q Consensus 160 n~w~kiAkrk~R~~~~~k~r~~a~LqKrrelk~aGi~~~~~~~k~~~~d~n~~ip~e~~p~~g~~d~~~e~~~~~~--~~ 237 (400)
++.+..+..+-|....+.+.+.+.+|++++++++||.......++. +|+ +.+.+|+|++.+++..+.. ..
T Consensus 170 ~~rv~~~~vk~~~~~~~~~~~~~~~qem~~~~~~s~~~~~~~~~~~------~~~--k~f~~~~~~~~e~~i~~~~~~~~ 241 (512)
T COG5147 170 VPRVSKADVKPREKGEENNPDIEDLQEMKELKSASITRHLILPSKS------EIN--KAFKKGETLALEQEINEYKEKKG 241 (512)
T ss_pred cccchHhhhhHHhhcccccccHHHHHHHhHHHHHHHHHHHhhhhhh------hhc--cccchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998664433322 667 8899999999876544321 11
Q ss_pred CCcchHHhhccchhHHHHH-----HhhhHHHHHhHHhhhCcHHHHHHHhhcCCcchhcccCCCCCCCCCCChHHHHHHHH
Q 047012 238 FPTTIEELEGKRRVDIEAQ-----LRRQDIAKNKIAQRQDAPSAILQANKLNDPETVRKRSKLMLPAPQISDHELEEIAK 312 (400)
Q Consensus 238 f~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~lp~p~~~~~~~~~~~~ 312 (400)
+... +-.++....+..+. ..+....+.++.-....-. .+..+.....-.++.++.|+.|+++-...--.|.
T Consensus 242 ~sr~-q~~~~Iws~~~~~~~f~~n~~~~l~~R~~ksiy~~~rr---ky~~f~~~~~wt~e~~~eL~~~~~~~~~~w~~ig 317 (512)
T COG5147 242 LSRK-QFCERIWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRR---KYNIFEQRGKWTKEEEQELAKLVVEHGGSWTEIG 317 (512)
T ss_pred ccHH-HHHhhccccccccccccchhhcccccccccchHHHHHH---hhhHHhhhccCccccccccccccccccchhhHhh
Confidence 1110 00111111110000 0000000000000000111 1122222344678999999999998777766665
Q ss_pred hchhhhhhhcccccccCchhhHHhhhcccCCCCCCCCCCCCCCCCC--CCCcchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 047012 313 MGYASDLIAGNEELTEGSGATRALLANYAQTPQRGMTPSRTPQRTP--AGKGDAVMMEAENLARMRESQTPLLGGENPE 389 (400)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~--~~~~d~~~~ea~n~~~~~~~~t~l~g~~n~~ 389 (400)
.+.+.-...- +-=-.+|.. .+.++.|+|- .+ -...|.|..|.+|-..+..-+--+++-++.+
T Consensus 318 ~~~~rmp~~c-----------rd~wr~~~~---~g~t~~~~~w-s~eee~~l~~vv~e~~~~~~~~~~~~~~li~~~~~ 381 (512)
T COG5147 318 KLLGRMPNDC-----------RDRWRDYVK---CGDTLKRNRW-SIEEEELLDKVVNEMRLEAQQSSRILWLLIAQNIR 381 (512)
T ss_pred hhhccCcHHH-----------HHHHhhhcc---ccCccCCCCC-chhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 5443211100 000122322 1234445542 32 1345889898888766655555555555444
No 8
>PLN03091 hypothetical protein; Provisional
Probab=99.89 E-value=3e-23 Score=210.99 Aligned_cols=110 Identities=25% Similarity=0.401 Sum_probs=100.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-c-CCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCC
Q 047012 54 DPSIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-I-VGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPN 130 (400)
Q Consensus 54 ~p~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l-~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~ 130 (400)
...+++++||+|||++|+.+|.+|| .+|..||. + +|||++|||+||.++|+|.+++++
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgp------------------- 69 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGT------------------- 69 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCC-------------------
Confidence 3578899999999999999999999 58999999 4 489999999999999999999987
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhcC-cCCchHHHHHHHHHHHHhHHHHHHcCCC
Q 047012 131 PESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKR-KAREKQLEEARRLASLQKRRELKAAGID 196 (400)
Q Consensus 131 peskpa~pd~~d~teeE~emL~ea~arlgn~w~kiAkr-k~R~~~~~k~r~~a~LqKrrelk~aGi~ 196 (400)
||.+|+++|.++++.||++|.+||+. +||+++.++|||+..|+|+ |+..||+
T Consensus 70 ------------WT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk--lr~~~I~ 122 (459)
T PLN03091 70 ------------FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK--LRQRGID 122 (459)
T ss_pred ------------CCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHcCCC
Confidence 99999999999999999999999999 9999999999999999887 4445554
No 9
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.83 E-value=1.7e-20 Score=196.43 Aligned_cols=146 Identities=27% Similarity=0.398 Sum_probs=133.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCC---ChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCC-CC
Q 047012 5 IKGGVWKNTEDEILKAAVMKYGKN---QWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMP-TQ 80 (400)
Q Consensus 5 lKkG~WT~EEDe~L~~aV~kyG~~---~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G-~~ 80 (400)
++...||.|||.+|.++|.....| +|.+|-.+|++|+..|...||...|+|++++|+||.+||.+|+.+|.+|| ..
T Consensus 303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kd 382 (939)
T KOG0049|consen 303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKD 382 (939)
T ss_pred HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccc
Confidence 566789999999999999987665 89999999999999999999999999999999999999999999999999 57
Q ss_pred cccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Q 047012 81 WRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLA 159 (400)
Q Consensus 81 W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~peskpa~pd~~d~teeE~emL~ea~arlg 159 (400)
|..|-. ++|||..|||+||.+.|....+.+. |+-.|++.|.+++..||
T Consensus 383 w~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~r-------------------------------W~l~edeqL~~~V~~YG 431 (939)
T KOG0049|consen 383 WAKVRQAVPNRSDSQCRERYTNVLNRSAKVER-------------------------------WTLVEDEQLLYAVKVYG 431 (939)
T ss_pred hhhHHHhcCCccHHHHHHHHHHHHHHhhccCc-------------------------------eeecchHHHHHHHHHHc
Confidence 999999 9999999999999999999988876 99999999999999998
Q ss_pred -CchhHHhcC-cCCchHHHHHHHH
Q 047012 160 -NTRGKKAKR-KAREKQLEEARRL 181 (400)
Q Consensus 160 -n~w~kiAkr-k~R~~~~~k~r~~ 181 (400)
..|.++|.. +.|+..+-..||.
T Consensus 432 ~g~WakcA~~Lp~~t~~q~~rrR~ 455 (939)
T KOG0049|consen 432 KGNWAKCAMLLPKKTSRQLRRRRL 455 (939)
T ss_pred cchHHHHHHHccccchhHHHHHHH
Confidence 569999999 7777744444443
No 10
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.77 E-value=3.4e-19 Score=186.84 Aligned_cols=153 Identities=25% Similarity=0.381 Sum_probs=140.7
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcc-cchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCC---
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVR-KSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMP--- 78 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~-RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G--- 78 (400)
+.+++..||+|||+.|+++...++..+|..||..|+. ||..||..+|+..+.. +....||+|||.+|..+|+..-
T Consensus 249 P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~-L~ekeWsEEed~kL~alV~~~~~nS 327 (939)
T KOG0049|consen 249 PKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQ-LSEKEWSEEEDTKLIALVKITSINS 327 (939)
T ss_pred CccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHH-HHhhhcchhhhHHHHHHHHHhhccC
Confidence 5688999999999999999999999999999999987 9999999999987653 5568999999999999998764
Q ss_pred -CCcccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 047012 79 -TQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARA 156 (400)
Q Consensus 79 -~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~peskpa~pd~~d~teeE~emL~ea~a 156 (400)
-+|.+|-. |+||+..|..-||...|+|.++++. |+++||.||+.|++
T Consensus 328 hI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~-------------------------------wt~~ED~~L~~AV~ 376 (939)
T KOG0049|consen 328 HIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGR-------------------------------WTDQEDVLLVCAVS 376 (939)
T ss_pred ccchHHHHHhcCCcchhhhhhhheeccCccccCCC-------------------------------CCCHHHHHHHHHHH
Confidence 38999999 9999999999999999999999987 99999999999999
Q ss_pred HhcCc-hhHHhcC-cCCchHHHHHHHHHHHHhH
Q 047012 157 RLANT-RGKKAKR-KAREKQLEEARRLASLQKR 187 (400)
Q Consensus 157 rlgn~-w~kiAkr-k~R~~~~~k~r~~a~LqKr 187 (400)
+||-+ |.++..- ++|.+-++..|+...|..+
T Consensus 377 ~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 377 RYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred HhCccchhhHHHhcCCccHHHHHHHHHHHHHHh
Confidence 99755 9999888 9999999999999888654
No 11
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.62 E-value=8.6e-16 Score=116.71 Aligned_cols=60 Identities=43% Similarity=0.946 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHH
Q 047012 10 WKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKL 70 (400)
Q Consensus 10 WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekL 70 (400)
||++||++|+.+|..||. +|..||.+|++||+.||+.||..+|.+.+++++||.+||++|
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999995 999999999889999999999999999999999999999987
No 12
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.40 E-value=1.4e-13 Score=104.56 Aligned_cols=50 Identities=42% Similarity=0.779 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccccCC-CChHHHHHHHHHHHhHhhhcCC
Q 047012 62 WTREEDEKLLHLAKLMPTQWRTIAPIVG-RTPSQCLERYEKLLDAACAKDE 111 (400)
Q Consensus 62 WT~EEDekLl~lv~~~G~~W~~IA~l~G-RT~~QCr~Rw~~lL~~~i~k~~ 111 (400)
||.+||++|+.+|..||.+|..||.++| ||+.||+.||.++|.+.+.+++
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~ 51 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGP 51 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSS
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCC
Confidence 9999999999999999999999999557 9999999999998887777765
No 13
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.34 E-value=8.1e-13 Score=96.73 Aligned_cols=47 Identities=43% Similarity=0.832 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc-ccchhhhhhhhhccC
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~-~RS~~QCr~RW~~~L 53 (400)
+|+||.+||++|..+|.+||.++|..||..|+ +||..||+.||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999977999999999 999999999999875
No 14
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.32 E-value=2.6e-12 Score=136.15 Aligned_cols=103 Identities=28% Similarity=0.602 Sum_probs=91.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCC--CcCCCCHHHHHHHHHHHH-------h
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSI--KKTEWTREEDEKLLHLAK-------L 76 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~l--kkg~WT~EEDekLl~lv~-------~ 76 (400)
++|.||++|++.|..+|..+|. +|..|+..|+ |.+..|++||.++..++- +++.||.||.++|+.+|. +
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg-r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q 460 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG-RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ 460 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc-cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999999999996 9999999988 999999999999998884 899999999999999994 2
Q ss_pred C-------------------CCCcccccccCC-CChHHHHHHHHHHHhHhhhcC
Q 047012 77 M-------------------PTQWRTIAPIVG-RTPSQCLERYEKLLDAACAKD 110 (400)
Q Consensus 77 ~-------------------G~~W~~IA~l~G-RT~~QCr~Rw~~lL~~~i~k~ 110 (400)
+ +-+|..|+.++| |+..|||.+|+.++......+
T Consensus 461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~ 514 (607)
T KOG0051|consen 461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK 514 (607)
T ss_pred ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence 2 127999999554 999999999999997665443
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.29 E-value=6.4e-12 Score=133.20 Aligned_cols=153 Identities=20% Similarity=0.277 Sum_probs=127.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCC-----------------------CChhHHHHHhcccchhhhhhhhhccCCCCC-Cc
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGK-----------------------NQWARISSLLVRKSAKQCKARWYEWLDPSI-KK 59 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~-----------------------~~W~~IA~~L~~RS~~QCr~RW~~~L~p~l-kk 59 (400)
.++.+.|+.+||..|...|..|-. +-|..|...||.|+...++.+-++..+|-- ++
T Consensus 305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~r 384 (607)
T KOG0051|consen 305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKR 384 (607)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccccc
Confidence 356689999999999999987722 137889999999999998874444444433 89
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccccCCCChHHHHHHHHHHHhHhh--hcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 60 TEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAAC--AKDENYEPGDDPRKLRPGEIDPNPESKPAR 137 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~G~~W~~IA~l~GRT~~QCr~Rw~~lL~~~i--~k~~~~~~~~d~~~Lr~gei~p~peskpa~ 137 (400)
|.||++|++.|..+|.++|+.|..|+.++||.+..|++||.++....- +++.
T Consensus 385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P~~crd~wr~~~~~g~~~~r~~-------------------------- 438 (607)
T KOG0051|consen 385 GKWTPEEEEELKKLVVEHGNDWKEIGKALGRMPMDCRDRWRQYVKCGSKRNRGA-------------------------- 438 (607)
T ss_pred CCCCcchHHHHHHHHHHhcccHHHHHHHHccCcHHHHHHHHHhhccccccccCc--------------------------
Confidence 999999999999999999999999999999999999999999998764 3333
Q ss_pred CCCCCCCHHHHHHHHHHHH------------------Hhc--------CchhHHhcC-cCCchHHHHHHHHHHHHhH
Q 047012 138 PDPVDMDEDEKEMLSEARA------------------RLA--------NTRGKKAKR-KAREKQLEEARRLASLQKR 187 (400)
Q Consensus 138 pd~~d~teeE~emL~ea~a------------------rlg--------n~w~kiAkr-k~R~~~~~k~r~~a~LqKr 187 (400)
||-+|.+.|..++. ++. =.|.-|+.. -.|.+..|+-+|+.++-+.
T Consensus 439 -----Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 439 -----WSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSP 510 (607)
T ss_pred -----chHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhH
Confidence 99999999998884 111 259999998 7999999999999888766
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.22 E-value=6.3e-12 Score=92.03 Aligned_cols=45 Identities=49% Similarity=0.869 Sum_probs=40.7
Q ss_pred cCCCCHHHHHHHHHHHHhCCCC-cccccc-cC-CCChHHHHHHHHHHH
Q 047012 59 KTEWTREEDEKLLHLAKLMPTQ-WRTIAP-IV-GRTPSQCLERYEKLL 103 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~~-W~~IA~-l~-GRT~~QCr~Rw~~lL 103 (400)
+++||.+||++|+++|..||.. |..||. ++ |||+.||+.||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999977 999999 88 899999999999985
No 17
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.7e-10 Score=119.79 Aligned_cols=100 Identities=29% Similarity=0.305 Sum_probs=93.0
Q ss_pred CCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 57 IKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESK 134 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~pesk 134 (400)
++.|.|+.-||+.|...|.+|| ++|+.|++ +.-.|+.||+.||+.+|+|.+++..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~te----------------------- 61 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTE----------------------- 61 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhh-----------------------
Confidence 4678999999999999999999 78999999 5568999999999999999999977
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhcCcCCchHHHHHHHHHHHHhH
Q 047012 135 PARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKR 187 (400)
Q Consensus 135 pa~pd~~d~teeE~emL~ea~arlgn~w~kiAkrk~R~~~~~k~r~~a~LqKr 187 (400)
|+.+|++.|+++...+-+.|..||.--||+.+++.-|++.+|-.-
T Consensus 62 --------ws~eederlLhlakl~p~qwrtIa~i~gr~~~qc~eRy~~ll~~~ 106 (617)
T KOG0050|consen 62 --------WSREEDERLLHLAKLEPTQWRTIADIMGRTSQQCLERYNNLLDVY 106 (617)
T ss_pred --------hhhhHHHHHHHHHHhcCCccchHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887543
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.03 E-value=3.4e-10 Score=80.11 Aligned_cols=48 Identities=44% Similarity=0.894 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCC
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
++.||.+||.+|..++..||..+|..||..|++||+.+|+.||..++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 478999999999999999996699999999999999999999998764
No 19
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.94 E-value=7.1e-10 Score=116.63 Aligned_cols=101 Identities=27% Similarity=0.387 Sum_probs=93.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 56 SIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPES 133 (400)
Q Consensus 56 ~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~pes 133 (400)
..+.|.|+..||+.|..+|+.+| ++|+.||. |.-++++||+.||++++++.+++..
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~---------------------- 74 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKN---------------------- 74 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhccccc----------------------
Confidence 35678999999999999999999 68999999 6668999999999999999999887
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhcCc-CCchHHHHHHHHHHHHhH
Q 047012 134 KPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRK-AREKQLEEARRLASLQKR 187 (400)
Q Consensus 134 kpa~pd~~d~teeE~emL~ea~arlgn~w~kiAkrk-~R~~~~~k~r~~a~LqKr 187 (400)
|+.+|++.|.++...+|+.|..||..+ +|+.+.+-+||+..|.-.
T Consensus 75 ---------~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~~~~ 120 (512)
T COG5147 75 ---------WSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDL 120 (512)
T ss_pred ---------ccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHHHhhhh
Confidence 999999999999999999999999995 599999999999887655
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.92 E-value=8.3e-10 Score=78.13 Aligned_cols=46 Identities=50% Similarity=0.858 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHhCC-CCcccccc-cCCCChHHHHHHHHHHHh
Q 047012 59 KTEWTREEDEKLLHLAKLMP-TQWRTIAP-IVGRTPSQCLERYEKLLD 104 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~GRT~~QCr~Rw~~lL~ 104 (400)
+++||++||.+|+.++..+| .+|..||. +++||+.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999 99999999 888999999999998864
No 21
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.87 E-value=2.8e-09 Score=74.40 Aligned_cols=45 Identities=47% Similarity=0.933 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccC
Q 047012 9 VWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWL 53 (400)
Q Consensus 9 ~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L 53 (400)
+||.+||..|..++..||..+|..||..|++||..+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999669999999999999999999998753
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.77 E-value=5.4e-09 Score=72.91 Aligned_cols=43 Identities=51% Similarity=0.886 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhCC-CCcccccc-cCCCChHHHHHHHHHHH
Q 047012 61 EWTREEDEKLLHLAKLMP-TQWRTIAP-IVGRTPSQCLERYEKLL 103 (400)
Q Consensus 61 ~WT~EEDekLl~lv~~~G-~~W~~IA~-l~GRT~~QCr~Rw~~lL 103 (400)
+||.+||..|+.++..+| .+|..||. +++||+.+|+.+|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999 77899999999998864
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.81 E-value=5.8e-05 Score=77.99 Aligned_cols=50 Identities=24% Similarity=0.520 Sum_probs=46.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccC
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWL 53 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L 53 (400)
.+-.+.||.+|+-.|+++++.||.|||..||.+++.|+..+|+.+|..++
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999998864
No 24
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.39 E-value=0.00025 Score=54.48 Aligned_cols=47 Identities=26% Similarity=0.433 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCh---hHHHHHhc-cc-chhhhhhhhhccC
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQW---ARISSLLV-RK-SAKQCKARWYEWL 53 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W---~~IA~~L~-~R-S~~QCr~RW~~~L 53 (400)
+=.||+||...++.+|..||.++| ..|+.+|. .+ |..||+.+++.|.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 347999999999999999998899 99999885 45 9999999987764
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.79 E-value=0.0017 Score=49.92 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=39.8
Q ss_pred cCCCCHHHHHHHHHHHHhCCC-Cc---ccccc-cC-CC-ChHHHHHHHHHHHh
Q 047012 59 KTEWTREEDEKLLHLAKLMPT-QW---RTIAP-IV-GR-TPSQCLERYEKLLD 104 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~-~W---~~IA~-l~-GR-T~~QCr~Rw~~lL~ 104 (400)
+-.||+||..++++.+..+|. +| ..|+. +. .+ |..||+.+++.|..
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999995 99 99998 43 35 99999999998863
No 26
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.77 E-value=0.0012 Score=69.16 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=42.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhcc
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEW 52 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~ 52 (400)
....||.+|..+|++.|+.||. +|.+||.++++|+..||..||.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhCCCCHHHHHHHHHcC
Confidence 4568999999999999999997 999999999999999999998764
No 27
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.63 E-value=0.0017 Score=69.10 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhcc
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEW 52 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~ 52 (400)
++.||.+|.-+|+.+|+.||. +|.+||.++++||..||-.++.+.
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGD-DWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcc-cHHHHHhccCCCCHHHHHHHHHhc
Confidence 578999999999999999997 999999999999999999998763
No 28
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.63 E-value=0.0081 Score=57.04 Aligned_cols=96 Identities=20% Similarity=0.334 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhHHHHHhc---ccchhhhhhhhhccC-CCC--------------------CCcCCCCH
Q 047012 9 VWKNTEDEILKAAVMKYGKNQWARISSLLV---RKSAKQCKARWYEWL-DPS--------------------IKKTEWTR 64 (400)
Q Consensus 9 ~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~---~RS~~QCr~RW~~~L-~p~--------------------lkkg~WT~ 64 (400)
+|++.+|-.|+.+|..-. +-..|+.-+. .-|...+..||+..| +|. ..+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999996544 5677766542 456677889999875 443 24578999
Q ss_pred HHHHHHHHHHHhCCC---Ccccccc------cCCCChHHHHHHHHHHHhHh
Q 047012 65 EEDEKLLHLAKLMPT---QWRTIAP------IVGRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 65 EEDekLl~lv~~~G~---~W~~IA~------l~GRT~~QCr~Rw~~lL~~~ 106 (400)
+|++.|......... .+.+|-. ..+||+++...+|..+..-.
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~ 129 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH 129 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence 999999997654432 4544433 24799999999999765443
No 29
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.60 E-value=0.0016 Score=67.55 Aligned_cols=49 Identities=33% Similarity=0.575 Sum_probs=43.6
Q ss_pred CCcCCCCHHHHHHHHHHHHhCC-CCcccccccCC-CChHHHHHHHHHHHhH
Q 047012 57 IKKTEWTREEDEKLLHLAKLMP-TQWRTIAPIVG-RTPSQCLERYEKLLDA 105 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~l~G-RT~~QCr~Rw~~lL~~ 105 (400)
+-...||.+|+-.|++++..+| +||..||..+| ||...|+++|.+++-.
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 4456799999999999999999 99999999776 9999999999997643
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.55 E-value=0.0011 Score=60.90 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=42.7
Q ss_pred CcCCCCHHHHHHHHHHHHhC---C-C---CcccccccCCCChHHHHHHHHHHHhHhhh
Q 047012 58 KKTEWTREEDEKLLHLAKLM---P-T---QWRTIAPIVGRTPSQCLERYEKLLDAACA 108 (400)
Q Consensus 58 kkg~WT~EEDekLl~lv~~~---G-~---~W~~IA~l~GRT~~QCr~Rw~~lL~~~i~ 108 (400)
+...||.|||.+|.+.|-.| | . -+..++.-++||+..|..||+.+++....
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHHHHHH
Confidence 45789999999999988665 3 2 37777788899999999999999998763
No 31
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.79 E-value=0.009 Score=62.73 Aligned_cols=53 Identities=28% Similarity=0.525 Sum_probs=45.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCcccccccCC-CChHHHHHHHHHH--HhHhhhcCC
Q 047012 59 KTEWTREEDEKLLHLAKLMPTQWRTIAPIVG-RTPSQCLERYEKL--LDAACAKDE 111 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~~W~~IA~l~G-RT~~QCr~Rw~~l--L~~~i~k~~ 111 (400)
...||.+|..+|++.+..||..|.+||..+| +|..||..+|.++ .++.+.++.
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~ 334 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGD 334 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhccc
Confidence 4589999999999999999999999999655 9999999999985 455555543
No 32
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.43 E-value=0.0052 Score=49.51 Aligned_cols=47 Identities=34% Similarity=0.648 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHh------C--CC------Ccccccc-cC----CCChHHHHHHHHHHHhHh
Q 047012 60 TEWTREEDEKLLHLAKL------M--PT------QWRTIAP-IV----GRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~------~--G~------~W~~IA~-l~----GRT~~QCr~Rw~~lL~~~ 106 (400)
..||.+|...|++++.. + |+ -|..||. +. .||+.||+.+|.++...-
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 57999999999998765 1 11 4999998 42 499999999999987654
No 33
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.41 E-value=0.016 Score=46.72 Aligned_cols=45 Identities=20% Similarity=0.597 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHH------hC--C-----CChhHHHHHhc----ccchhhhhhhhhcc
Q 047012 8 GVWKNTEDEILKAAVMK------YG--K-----NQWARISSLLV----RKSAKQCKARWYEW 52 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~k------yG--~-----~~W~~IA~~L~----~RS~~QCr~RW~~~ 52 (400)
-.||.+|...|+.++.. ++ . .-|..||..|. .||+.||+.+|.++
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47999999999999977 21 1 14999999984 69999999999874
No 34
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.27 E-value=0.013 Score=53.78 Aligned_cols=49 Identities=20% Similarity=0.544 Sum_probs=41.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCC------CChhHHHHHhcccchhhhhhhhhccCC
Q 047012 5 IKGGVWKNTEDEILKAAVMKYGK------NQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 5 lKkG~WT~EEDe~L~~aV~kyG~------~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
.+...||.+||.+|-..|-+|-. ..+..|+..|. ||+..|.-||+.++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~-RTsAACGFRWNs~VR 56 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN-RTAAACGFRWNAYVR 56 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-ccHHHhcchHHHHHH
Confidence 45678999999999999988832 25788888887 999999999998865
No 35
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.15 E-value=0.014 Score=62.25 Aligned_cols=44 Identities=25% Similarity=0.609 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCcccccccC-CCChHHHHHHHHHH
Q 047012 59 KTEWTREEDEKLLHLAKLMPTQWRTIAPIV-GRTPSQCLERYEKL 102 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~~W~~IA~l~-GRT~~QCr~Rw~~l 102 (400)
+..||.+|.-+|++.|..||..|.+||..+ +||..||..+|.++
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 467999999999999999999999999955 59999999999875
No 36
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.97 E-value=0.022 Score=45.13 Aligned_cols=48 Identities=29% Similarity=0.414 Sum_probs=40.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC----------------CChhHHHHHh-----cccchhhhhhhhhccC
Q 047012 6 KGGVWKNTEDEILKAAVMKYGK----------------NQWARISSLL-----VRKSAKQCKARWYEWL 53 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~----------------~~W~~IA~~L-----~~RS~~QCr~RW~~~L 53 (400)
++..||.+|..+|+.+|.+|.. .-|..|+..| +.||..||+.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988732 1599999988 3699999999998763
No 37
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=94.55 E-value=0.026 Score=44.48 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=31.4
Q ss_pred cCCCCHHHHHHHHHHHHhC---C----C--Ccccccc-cC-CCChHHHHHHHHHHHhHh
Q 047012 59 KTEWTREEDEKLLHLAKLM---P----T--QWRTIAP-IV-GRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~---G----~--~W~~IA~-l~-GRT~~QCr~Rw~~lL~~~ 106 (400)
+.+||.+||..|+..|..+ | + =|..++. .+ .+|..+-|+||...|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 4689999999999999654 2 1 2888888 56 899999999999998764
No 38
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.38 E-value=0.031 Score=56.48 Aligned_cols=47 Identities=17% Similarity=0.425 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCC
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
--|+..|+-.|+.+..-.|.+||..||.+++.|+...|+.+|..++.
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999999999988765
No 39
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.19 E-value=0.02 Score=53.12 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=39.2
Q ss_pred CCcCCCCHHHHHHHHHHHHhCC----CC---cccccccCCCChHHHHHHHHHHHhHhh
Q 047012 57 IKKTEWTREEDEKLLHLAKLMP----TQ---WRTIAPIVGRTPSQCLERYEKLLDAAC 107 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G----~~---W~~IA~l~GRT~~QCr~Rw~~lL~~~i 107 (400)
.+...||.|+|.+|.+.|-.|+ .+ ...++..++||+.+|..||+.+++...
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence 3567899999999988776654 22 444445678999999999999998654
No 40
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.09 E-value=0.033 Score=51.71 Aligned_cols=49 Identities=18% Similarity=0.493 Sum_probs=39.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCC------ChhHHHHHhcccchhhhhhhhhccCC
Q 047012 5 IKGGVWKNTEDEILKAAVMKYGKN------QWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 5 lKkG~WT~EEDe~L~~aV~kyG~~------~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
.+...||.++|.+|-..|-.|+.. ....++..|. |++.+|..||+.++.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~-rt~aac~fRwNs~vr 57 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK-RTAAACGFRWNSVVR 57 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-hhHHHHHhHHHHHHH
Confidence 567899999999999999998754 3555555565 999999999977654
No 41
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=94.02 E-value=0.044 Score=43.25 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC------C--ChhHHHHHhc-ccchhhhhhhhhccCCCC
Q 047012 8 GVWKNTEDEILKAAVMKYGK------N--QWARISSLLV-RKSAKQCKARWYEWLDPS 56 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~------~--~W~~IA~~L~-~RS~~QCr~RW~~~L~p~ 56 (400)
-+||.+||++|...|..+.. + -|..++..-+ ++|..+-++||...|.+.
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 47999999999999966532 1 4999999877 899999999999888754
No 42
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=93.72 E-value=0.5 Score=54.81 Aligned_cols=98 Identities=22% Similarity=0.399 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhh-------hhhcc-----------------------------
Q 047012 9 VWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKA-------RWYEW----------------------------- 52 (400)
Q Consensus 9 ~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~-------RW~~~----------------------------- 52 (400)
.||.-+=..++.+..+||..+...||..|.+++...++. ||.++
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999998888866542 22211
Q ss_pred -------------C-CCCCCcCCCCHHHHHHHHHHHHhCC-CCccccc------c-c------CCCChHHHHHHHHHHHh
Q 047012 53 -------------L-DPSIKKTEWTREEDEKLLHLAKLMP-TQWRTIA------P-I------VGRTPSQCLERYEKLLD 104 (400)
Q Consensus 53 -------------L-~p~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA------~-l------~GRT~~QCr~Rw~~lL~ 104 (400)
+ .+..++..||.+||..|+-.+.+|| ++|..|- . | ..||+..+..|...++.
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 0 0223445699999999999999999 7898883 2 1 26999999999999886
Q ss_pred Hh
Q 047012 105 AA 106 (400)
Q Consensus 105 ~~ 106 (400)
--
T Consensus 986 ~~ 987 (1033)
T PLN03142 986 LI 987 (1033)
T ss_pred HH
Confidence 54
No 43
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=92.60 E-value=0.072 Score=53.93 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCcccccccCC-CChHHHHHHHHHHHhH
Q 047012 60 TEWTREEDEKLLHLAKLMP-TQWRTIAPIVG-RTPSQCLERYEKLLDA 105 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~G-~~W~~IA~l~G-RT~~QCr~Rw~~lL~~ 105 (400)
..|+..|+-+|++.+...| ++|..||..+| |+...|+++|..+.+.
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 4599999999999999999 89999999777 9999999999998874
No 44
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=91.61 E-value=0.15 Score=40.37 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHhCCC-----------------Ccccccc-c----C-CCChHHHHHHHHHHHhHh
Q 047012 59 KTEWTREEDEKLLHLAKLMPT-----------------QWRTIAP-I----V-GRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~-----------------~W~~IA~-l----~-GRT~~QCr~Rw~~lL~~~ 106 (400)
+..||.+|...|+++|..+.. -|..|+. + + .||..||+.+|.++....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 457999999999999987621 3999998 4 1 399999999999987653
No 45
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=89.15 E-value=0.41 Score=49.58 Aligned_cols=43 Identities=30% Similarity=0.442 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhc
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYE 51 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~ 51 (400)
-+||..|-+++..|+..+|. +++.||+++|+|+.+|++.+|.+
T Consensus 366 ~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHH
Confidence 37999999999999999998 99999999999999999998864
No 46
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=85.94 E-value=0.89 Score=39.91 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=36.6
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCC---CChhHHHHHh------------cccchhhhhhhhhc
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGK---NQWARISSLL------------VRKSAKQCKARWYE 51 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~---~~W~~IA~~L------------~~RS~~QCr~RW~~ 51 (400)
.-++..||.+||.-|+-.+.+||. +.|..|-..+ ..||+..+..|-..
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t 108 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT 108 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence 456789999999999999999999 8999998865 35777777666543
No 47
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=85.19 E-value=0.86 Score=50.72 Aligned_cols=45 Identities=22% Similarity=0.621 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhcc
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEW 52 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~ 52 (400)
.-.||+.|-..+.+|+-.|.. ++-.|+.+++++|..||-+-|+.|
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~K-DF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSK-DFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred cccccHHHHHHHHHHHHHhcc-cHHHHHHHhccccHHHHHHHHHHH
Confidence 347999999999999999997 999999999999999999988776
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=84.22 E-value=0.8 Score=46.29 Aligned_cols=47 Identities=30% Similarity=0.639 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhC----------CCCcccccc-c--CC--CChHHHHHHHHHHHhHh
Q 047012 60 TEWTREEDEKLLHLAKLM----------PTQWRTIAP-I--VG--RTPSQCLERYEKLLDAA 106 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~----------G~~W~~IA~-l--~G--RT~~QCr~Rw~~lL~~~ 106 (400)
..|+.+|-..|+++.... +.-|..||. + .| ||+.||+.+|.++...-
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 679999999999987432 235999998 4 34 99999999999998654
No 49
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=83.60 E-value=2.5 Score=40.38 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccc---cC-CCChHHHHHHHHHHH-hHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 61 EWTREEDEKLLHLAKLMPTQWRTIAP---IV-GRTPSQCLERYEKLL-DAACAKDENYEPGDDPRKLRPGEIDPNPESKP 135 (400)
Q Consensus 61 ~WT~EEDekLl~lv~~~G~~W~~IA~---l~-GRT~~QCr~Rw~~lL-~~~i~k~~~~~~~~d~~~Lr~gei~p~peskp 135 (400)
.|++.+|-.|+..|... ++-..|+. |- .-|-.-+.+||+.+| ++.+.+.... --+.| .|+...
T Consensus 1 rW~~~DDl~Li~av~~~-~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~----~m~~l-------~p~~~~ 68 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQT-NDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVA----AMRNL-------HPELIA 68 (199)
T ss_pred CCCchhhHHHHHHHHHh-cCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHH----HHHhC-------Ccchhh
Confidence 49999999999988653 33344444 33 368899999999988 5555442100 00111 222222
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCch---hHHhc-----C-cCCchHHHHHHHHHH
Q 047012 136 ARPDPVDMDEDEKEMLSEARARLANTR---GKKAK-----R-KAREKQLEEARRLAS 183 (400)
Q Consensus 136 a~pd~~d~teeE~emL~ea~arlgn~w---~kiAk-----r-k~R~~~~~k~r~~a~ 183 (400)
+-.....|+.+|+++|........++- .+|=. + .+||...-...|...
T Consensus 69 ~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm 125 (199)
T PF13325_consen 69 AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLM 125 (199)
T ss_pred cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence 333344599999999998765544333 22211 2 689999999999843
No 50
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=77.31 E-value=3.6 Score=33.33 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHh---C----CC-----ChhHHHHHhc-----ccchhhhhhhhhcc
Q 047012 9 VWKNTEDEILKAAVMKY---G----KN-----QWARISSLLV-----RKSAKQCKARWYEW 52 (400)
Q Consensus 9 ~WT~EEDe~L~~aV~ky---G----~~-----~W~~IA~~L~-----~RS~~QCr~RW~~~ 52 (400)
.||++.++.|+.++... | .+ .|..|+..|. ..+..||+.||..+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 59999999999998554 1 11 4999999884 35678999998764
No 51
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=73.82 E-value=4.6 Score=42.24 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCcccccc-c-----C-CCChHHHHHHHHHHHhHhhhc
Q 047012 59 KTEWTREEDEKLLHLAKLMPTQWRTIAP-I-----V-GRTPSQCLERYEKLLDAACAK 109 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~~W~~IA~-l-----~-GRT~~QCr~Rw~~lL~~~i~k 109 (400)
-..||.+|-.-|.+|++.|.-+|-.|+. . . .||-...++||+..+..-++-
T Consensus 130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA 187 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA 187 (445)
T ss_pred cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence 3579999999999999999999999997 3 2 399999999999988766543
No 52
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=73.20 E-value=3.8 Score=43.62 Aligned_cols=45 Identities=20% Similarity=0.468 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhcc
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEW 52 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~ 52 (400)
...||.||--+|-++...||. ++.+|-+.||.|+-.++..-|+.+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~LP~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGK-DFHKIRQALPHRSLASLVQYYYSW 231 (534)
T ss_pred cccchHHHHHHHHHHHHHhcc-cHHHHHHHccCccHHHHHHHHHHH
Confidence 468999999999999999998 999999999999999998888765
No 53
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=72.87 E-value=4.2 Score=41.08 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHh----C-----CCChhHHHHHh----cccchhhhhhhhhcc
Q 047012 8 GVWKNTEDEILKAAVMKY----G-----KNQWARISSLL----VRKSAKQCKARWYEW 52 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~ky----G-----~~~W~~IA~~L----~~RS~~QCr~RW~~~ 52 (400)
..|+.+|-..|+.+.... . ...|..||..+ ..||+.||+.+|.++
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl 112 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL 112 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 579999999999998542 1 12699999965 359999999999875
No 54
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=70.17 E-value=3.4 Score=43.07 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHH
Q 047012 60 TEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKL 102 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~l 102 (400)
-+||..|-+++..+....|..+..|+. ||.|+.+|++..|.+-
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHH
Confidence 469999999999999999999999999 8999999999999763
No 55
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=68.32 E-value=3.3 Score=29.76 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCC-CCcccccccCCCChHHHHHHHHHH
Q 047012 65 EEDEKLLHLAKLMP-TQWRTIAPIVGRTPSQCLERYEKL 102 (400)
Q Consensus 65 EEDekLl~lv~~~G-~~W~~IA~l~GRT~~QCr~Rw~~l 102 (400)
+=|.+|+.+....+ ..|..||..+|=|...|..|+..+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 34778888888877 589999999999999999999764
No 56
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=64.74 E-value=5.1 Score=35.19 Aligned_cols=50 Identities=30% Similarity=0.434 Sum_probs=39.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHhCCC----Ccccccc-c------------CCCChHHHHHHHHHHHhH
Q 047012 56 SIKKTEWTREEDEKLLHLAKLMPT----QWRTIAP-I------------VGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 56 ~lkkg~WT~EEDekLl~lv~~~G~----~W~~IA~-l------------~GRT~~QCr~Rw~~lL~~ 105 (400)
..++..||.+||.-|+-.+..+|- .|..|-. + ..||+..+..|-..++.-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 566788999999999999999985 7887764 2 169999999999998864
No 57
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=62.06 E-value=5.1 Score=32.91 Aligned_cols=13 Identities=38% Similarity=1.066 Sum_probs=8.6
Q ss_pred CCCCCHHHHHHHH
Q 047012 7 GGVWKNTEDEILK 19 (400)
Q Consensus 7 kG~WT~EEDe~L~ 19 (400)
.|.||+++|+.|.
T Consensus 47 ~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 47 PGIWTPEDDEMLR 59 (87)
T ss_dssp TT---HHHHHHHT
T ss_pred CCCcCHHHHHHHH
Confidence 5899999999993
No 58
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=60.06 E-value=7 Score=34.94 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCC-CCcccccccCCCChHHHHHHHHHHHhHhhhc
Q 047012 65 EEDEKLLHLAKLMP-TQWRTIAPIVGRTPSQCLERYEKLLDAACAK 109 (400)
Q Consensus 65 EEDekLl~lv~~~G-~~W~~IA~l~GRT~~QCr~Rw~~lL~~~i~k 109 (400)
+-|.+|+.+.+..| ..|+.||..+|-|...|+.|+..+.+..+-+
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 46888999888887 6999999999999999999999999887654
No 59
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=57.84 E-value=9.3 Score=30.87 Aligned_cols=45 Identities=29% Similarity=0.410 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhC---C-----C-----Ccccccc-c---CC--CChHHHHHHHHHHHhH
Q 047012 61 EWTREEDEKLLHLAKLM---P-----T-----QWRTIAP-I---VG--RTPSQCLERYEKLLDA 105 (400)
Q Consensus 61 ~WT~EEDekLl~lv~~~---G-----~-----~W~~IA~-l---~G--RT~~QCr~Rw~~lL~~ 105 (400)
.||++++..|++++... | + .|..|+. | +| .|..||++||..+-..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999987321 1 1 3888887 4 34 6889999998877543
No 60
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=57.09 E-value=17 Score=26.08 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhc
Q 047012 13 TEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYE 51 (400)
Q Consensus 13 EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~ 51 (400)
+=|..|+.+++.-|.-.|..||..++ =|...|..|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg-lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG-LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC-cCHHHHHHHHHH
Confidence 34778888888888889999999987 889999999864
No 61
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=55.30 E-value=8.4 Score=34.90 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCC-CCcccccccCCCChHHHHHHHHHHHhHhhhc
Q 047012 64 REEDEKLLHLAKLMP-TQWRTIAPIVGRTPSQCLERYEKLLDAACAK 109 (400)
Q Consensus 64 ~EEDekLl~lv~~~G-~~W~~IA~l~GRT~~QCr~Rw~~lL~~~i~k 109 (400)
.+-|.+|+.+.+..| -.|+.||+.+|-|...|+.|+..+.+..+-+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 345888888888877 6899999999999999999999999987654
No 62
>smart00595 MADF subfamily of SANT domain.
Probab=53.20 E-value=9.1 Score=30.62 Aligned_cols=23 Identities=35% Similarity=0.752 Sum_probs=20.5
Q ss_pred ChhHHHHHhcccchhhhhhhhhcc
Q 047012 29 QWARISSLLVRKSAKQCKARWYEW 52 (400)
Q Consensus 29 ~W~~IA~~L~~RS~~QCr~RW~~~ 52 (400)
.|..||..|+. +...|+.+|.+.
T Consensus 29 aW~~Ia~~l~~-~~~~~~~kw~~L 51 (89)
T smart00595 29 AWEEIAEELGL-SVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHH
Confidence 59999999985 999999999875
No 63
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=48.69 E-value=18 Score=26.25 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCcccccccCCCChHHHHHHHHHHHh
Q 047012 64 REEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLD 104 (400)
Q Consensus 64 ~EEDekLl~lv~~~G~~W~~IA~l~GRT~~QCr~Rw~~lL~ 104 (400)
++++..++.++-..|-.|.+||...|.|...++.+...-+.
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEILGISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 35667777788888889999999999999999988876543
No 64
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=46.25 E-value=22 Score=41.80 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=36.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChhHHHHHh------------cccchhhhhhhhhc
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKNQWARISSLL------------VRKSAKQCKARWYE 51 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L------------~~RS~~QCr~RW~~ 51 (400)
++..||.+||..|+-.+.+||.++|.+|-..+ ..||+..+..|-..
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~ 982 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDT 982 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHH
Confidence 45679999999999999999999999997654 24666666666443
No 65
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=41.61 E-value=29 Score=36.36 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHH-HhcccchhhhhhhhhccCC
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISS-LLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~-~L~~RS~~QCr~RW~~~L~ 54 (400)
..||.+|-..+...++.||+ ++..|-. .++.|+...|-.-|+.|-.
T Consensus 278 ~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVeyYYlWKk 324 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEYYYLWKK 324 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHHHHHhhc
Confidence 36999999999999999997 8888865 5789999999998887643
No 66
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=41.08 E-value=19 Score=39.73 Aligned_cols=46 Identities=20% Similarity=0.420 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHh-c---------ccchhhhhhhhhccC
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLL-V---------RKSAKQCKARWYEWL 53 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L-~---------~RS~~QCr~RW~~~L 53 (400)
+-.||..|...+..++..+|. ++..|-.++ . -++-.|++++|++.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 557999999999999999997 898884443 2 355568888888754
No 67
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=40.65 E-value=11 Score=39.51 Aligned_cols=48 Identities=15% Similarity=0.373 Sum_probs=40.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCChhHHHHH-----hcc-cchhhhhhhhhcc
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSL-----LVR-KSAKQCKARWYEW 52 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~-----L~~-RS~~QCr~RW~~~ 52 (400)
++....||.+|-+-|..+..+|.. .|--||.. ++. ||....++||+.+
T Consensus 127 ~l~dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v 180 (445)
T KOG2656|consen 127 HLNDNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSV 180 (445)
T ss_pred hhccccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHH
Confidence 456688999999999999999997 78888765 444 9999999999875
No 68
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=40.48 E-value=34 Score=27.63 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCC-------CChhHHHHHhcccc-----hhhhhhhhhccCC
Q 047012 16 EILKAAVMKYGK-------NQWARISSLLVRKS-----AKQCKARWYEWLD 54 (400)
Q Consensus 16 e~L~~aV~kyG~-------~~W~~IA~~L~~RS-----~~QCr~RW~~~L~ 54 (400)
-.|..+|.++|. +.|..||..|+--+ +.+++..|.++|.
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 39 YKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 357788888874 36999999985211 3566777777663
No 69
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=40.14 E-value=16 Score=43.99 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhh
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWY 50 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~ 50 (400)
...|+++|-+..+.=...|.. +...|+++|..+|..+|.--|+
T Consensus 225 ~n~Ws~~Ek~~fk~rf~~H~k-nf~~~as~~erkSv~d~vlfyy 267 (1672)
T KOG1878|consen 225 MNEWSPEEKELFKSRFAQHVK-NFGLIASFFERKSVSDCVLFYY 267 (1672)
T ss_pred hhhccccccccccchhhhcCc-chhhhhhhhcccchhhceeeee
Confidence 357999998888888888885 8999999999999999987664
No 70
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=40.07 E-value=32 Score=30.67 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCC
Q 047012 12 NTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPS 56 (400)
Q Consensus 12 ~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~ 56 (400)
.+-|..|+.+.++.|.-.|..||..++ -|...|+.|+.++.+.+
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lg-lS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFG-VSPGTIHVRVEKMKQAG 51 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCC
Confidence 356888999999998889999999987 89999999999876654
No 71
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=35.97 E-value=27 Score=28.62 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=10.1
Q ss_pred CCCCcCCCCHHHHHHHH
Q 047012 55 PSIKKTEWTREEDEKLL 71 (400)
Q Consensus 55 p~lkkg~WT~EEDekLl 71 (400)
|....|-||+++|..|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55667899999999994
No 72
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=34.51 E-value=94 Score=22.20 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhcCchhHHhcCcCCchHHHHHHHHHHHHhH
Q 047012 143 MDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKR 187 (400)
Q Consensus 143 ~teeE~emL~ea~arlgn~w~kiAkrk~R~~~~~k~r~~a~LqKr 187 (400)
++++|.++|..-+ --+-++..||...|-+...+..+....|+|=
T Consensus 5 L~~~er~vi~~~y-~~~~t~~eIa~~lg~s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 5 LPPREREVIRLRY-FEGLTLEEIAERLGISRSTVRRILKRALKKL 48 (50)
T ss_dssp S-HHHHHHHHHHH-TST-SHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-cCCCCHHHHHHHHCCcHHHHHHHHHHHHHHh
Confidence 7788888776655 5678999999999999999999888777664
No 73
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=34.19 E-value=83 Score=33.91 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=40.2
Q ss_pred CcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHH
Q 047012 58 KKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLL 103 (400)
Q Consensus 58 kkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL 103 (400)
....||.||--++-.+...||.++..|-+ ++.|+-.++..-|+..-
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~K 232 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWK 232 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHH
Confidence 35689999998988999999999999999 89999999988777654
No 74
>smart00595 MADF subfamily of SANT domain.
Probab=34.01 E-value=15 Score=29.29 Aligned_cols=26 Identities=31% Similarity=0.675 Sum_probs=22.1
Q ss_pred CcccccccCCCChHHHHHHHHHHHhH
Q 047012 80 QWRTIAPIVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 80 ~W~~IA~l~GRT~~QCr~Rw~~lL~~ 105 (400)
-|..||.-+|-|...|+.+|.++-+.
T Consensus 29 aW~~Ia~~l~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 29 AWEEIAEELGLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 39999997777999999999998654
No 75
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=33.61 E-value=38 Score=30.60 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCC
Q 047012 12 NTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSI 57 (400)
Q Consensus 12 ~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~l 57 (400)
.+-|..|+.+.++.|.-.|..||..++ =|...|+.|+.+..+.++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg-lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG-LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCC
Confidence 456888888988888889999999987 899999999998866554
No 76
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=31.60 E-value=38 Score=38.36 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=39.6
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHH
Q 047012 59 KTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLL 103 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL 103 (400)
...||+.|-.++..++-.|...+..|++ +.++|-.||-+-|+..-
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWK 664 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWK 664 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHH
Confidence 3579999999999999999999999999 78999999998877653
No 77
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=30.95 E-value=40 Score=27.56 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCC-------CChhHHHHHhccc-----chhhhhhhhhccCC
Q 047012 16 EILKAAVMKYGK-------NQWARISSLLVRK-----SAKQCKARWYEWLD 54 (400)
Q Consensus 16 e~L~~aV~kyG~-------~~W~~IA~~L~~R-----S~~QCr~RW~~~L~ 54 (400)
-.|..+|.+.|. +.|..|+..|+-. ...+.+..|.++|.
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 467888888775 3799999998532 23455666666654
No 78
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=26.89 E-value=78 Score=35.01 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=40.7
Q ss_pred CcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHH
Q 047012 58 KKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKL 102 (400)
Q Consensus 58 kkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~l 102 (400)
..++|+.+|-++........|...+.|+. +++|+.+|++..|..-
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~e 453 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKE 453 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhh
Confidence 44789999999999999999999999999 8999999999988653
No 79
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=26.55 E-value=45 Score=28.99 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCC-CCcccccccCCCChHHHHHHHHHHHhHhhhcC
Q 047012 65 EEDEKLLHLAKLMP-TQWRTIAPIVGRTPSQCLERYEKLLDAACAKD 110 (400)
Q Consensus 65 EEDekLl~lv~~~G-~~W~~IA~l~GRT~~QCr~Rw~~lL~~~i~k~ 110 (400)
+-|.+++.+.+..+ ..+..||+.+|-|...|+.|-.++.+..+-++
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceee
Confidence 45778888887777 68999999999999999999999999887654
No 80
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=25.12 E-value=59 Score=26.55 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCC--------CcccccccCC------CChHHHHHHHHHHHhHh
Q 047012 68 EKLLHLAKLMPT--------QWRTIAPIVG------RTPSQCLERYEKLLDAA 106 (400)
Q Consensus 68 ekLl~lv~~~G~--------~W~~IA~l~G------RT~~QCr~Rw~~lL~~~ 106 (400)
-+|..+|...|+ .|..|+..+| ..+.+.+..|.++|.+-
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 356677777664 6999999444 23567888999988764
No 81
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=25.04 E-value=72 Score=35.52 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCcccccc-----------cCCCChHHHHHHHHHHHhHhh
Q 047012 59 KTEWTREEDEKLLHLAKLMPTQWRTIAP-----------IVGRTPSQCLERYEKLLDAAC 107 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~~W~~IA~-----------l~GRT~~QCr~Rw~~lL~~~i 107 (400)
+..||..|..-+...++++|.++..|-+ ..-.|-.|+|..|+..+..-.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999988832 223677899999999887543
No 82
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=25.00 E-value=60 Score=26.68 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCC-CCcccccccCCCChHHHHHHHHHHHhHhhhc
Q 047012 65 EEDEKLLHLAKLMP-TQWRTIAPIVGRTPSQCLERYEKLLDAACAK 109 (400)
Q Consensus 65 EEDekLl~lv~~~G-~~W~~IA~l~GRT~~QCr~Rw~~lL~~~i~k 109 (400)
+.|.+++.+....+ ..|..||..+|-+...|+.++..+.+..+-+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 46778888887776 5899999999999999999999999876544
No 83
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=24.98 E-value=60 Score=25.83 Aligned_cols=44 Identities=36% Similarity=0.744 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCC-------CCcCCCCHHHHHHH
Q 047012 15 DEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPS-------IKKTEWTREEDEKL 70 (400)
Q Consensus 15 De~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~-------lkkg~WT~EEDekL 70 (400)
+.+|..+|..|| |...+..+. ..|.. -+|+ +++++|-.+.-+.|
T Consensus 12 e~il~~Lv~~yG---W~~L~~~i~----i~CF~-----~~PsikSSLkFLRkTpWAR~KVE~l 62 (64)
T PF09905_consen 12 ETILTELVEHYG---WEELGERIN----INCFK-----NNPSIKSSLKFLRKTPWAREKVENL 62 (64)
T ss_dssp HHHHHHHHHHT----HHHHHHHTT----SSSTT-----SS--HHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHh
Confidence 568899999998 999998775 22322 2444 35788988876655
No 84
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=24.55 E-value=1.4e+02 Score=21.39 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHhcCchhHHhcCcCCchHHHHHHHHHHHH
Q 047012 143 MDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQ 185 (400)
Q Consensus 143 ~teeE~emL~ea~arlgn~w~kiAkrk~R~~~~~k~r~~a~Lq 185 (400)
+++.+. .++.++-..|-+|..||..-|.+...++++....++
T Consensus 11 L~~~~r-~i~~l~~~~g~s~~eIa~~l~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 11 LPERQR-EIFLLRYFQGMSYAEIAEILGISESTVKRRLRRARK 52 (54)
T ss_dssp S-HHHH-HHHHHHHTS---HHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHCcCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 444444 455667788999999999999999999987765543
No 85
>smart00351 PAX Paired Box domain.
Probab=23.09 E-value=4.6e+02 Score=22.70 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=48.8
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc--ccchhhhhhhhhc--cCCCCC----CcCCCCHHHHHHHHHHH
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLV--RKSAKQCKARWYE--WLDPSI----KKTEWTREEDEKLLHLA 74 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~--~RS~~QCr~RW~~--~L~p~l----kkg~WT~EEDekLl~lv 74 (400)
.++++.+++.++-..+..++. -|. .-..||..|+ ..+...+..||.. .+.|.. ....=+...+..|+.++
T Consensus 11 ~~~~~~~~s~~~R~riv~~~~-~G~-s~~~iA~~~gvs~~tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~~~~ 88 (125)
T smart00351 11 VFVNGRPLPDEERQRIVELAQ-NGV-RPCDISRQLCVSHGCVSKILGRYYETGSIRPGAIGGSKPKVATPKVVKKIADYK 88 (125)
T ss_pred eecCCCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHHHHH
Confidence 456677889988888888875 343 7899999985 4566667777764 344421 22234556666777777
Q ss_pred HhCC
Q 047012 75 KLMP 78 (400)
Q Consensus 75 ~~~G 78 (400)
..++
T Consensus 89 ~~~p 92 (125)
T smart00351 89 QENP 92 (125)
T ss_pred HHCC
Confidence 6654
No 86
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=22.83 E-value=2.5e+02 Score=23.62 Aligned_cols=68 Identities=16% Similarity=0.414 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHh----CCC---ChhHHHHHhccc-----chhh-------hhhhhhccCCCCCCc---CCCCHH
Q 047012 8 GVWKNTEDEILKAAVMKY----GKN---QWARISSLLVRK-----SAKQ-------CKARWYEWLDPSIKK---TEWTRE 65 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~ky----G~~---~W~~IA~~L~~R-----S~~Q-------Cr~RW~~~L~p~lkk---g~WT~E 65 (400)
..||.+++-.|++++..| |.. +|..+...+.+. +..| .+.||.+.... .+. ..++..
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k-~~~g~~~~~~~~ 83 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK-SKNGKDPSFSKP 83 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCCCH
Confidence 469999999999999777 532 565555554322 2233 34566655543 222 268888
Q ss_pred HHHHHHHHHHh
Q 047012 66 EDEKLLHLAKL 76 (400)
Q Consensus 66 EDekLl~lv~~ 76 (400)
-|..+.+|.+.
T Consensus 84 hd~~~f~Lsk~ 94 (98)
T PF04504_consen 84 HDRRLFELSKK 94 (98)
T ss_pred hHHHHHHHHHH
Confidence 88888888764
No 87
>PRK04217 hypothetical protein; Provisional
Probab=22.41 E-value=4.1e+02 Score=23.06 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchhHHhcCcCCchHHHHHHHHHHHHhHHHHH
Q 047012 140 PVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELK 191 (400)
Q Consensus 140 ~~d~teeE~emL~ea~arlgn~w~kiAkrk~R~~~~~k~r~~a~LqKrrelk 191 (400)
+..+++++.+. ..++..-|-+...||+.-+-+...+.+++....++=++..
T Consensus 40 ~~~Lt~eerea-i~l~~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L 90 (110)
T PRK04217 40 PIFMTYEEFEA-LRLVDYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQML 90 (110)
T ss_pred cccCCHHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 44588888744 4666667889999999999999999999987766654444
No 88
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=21.69 E-value=89 Score=22.33 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCcccccccCCCChHHHHHHHHHHHh
Q 047012 66 EDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLD 104 (400)
Q Consensus 66 EDekLl~lv~~~G~~W~~IA~l~GRT~~QCr~Rw~~lL~ 104 (400)
++..++.+.-..+-.+.+||..+|-|...++.+....+.
T Consensus 8 ~er~vi~~~y~~~~t~~eIa~~lg~s~~~V~~~~~~al~ 46 (50)
T PF04545_consen 8 REREVIRLRYFEGLTLEEIAERLGISRSTVRRILKRALK 46 (50)
T ss_dssp HHHHHHHHHHTST-SHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 444555555556678999999999999999888777664
No 89
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=21.07 E-value=1.1e+02 Score=27.94 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=37.8
Q ss_pred CcCCCCHHHHHHHHHHHHhCCCCcccccc--c---CCCChHHHHHHHHHHH
Q 047012 58 KKTEWTREEDEKLLHLAKLMPTQWRTIAP--I---VGRTPSQCLERYEKLL 103 (400)
Q Consensus 58 kkg~WT~EEDekLl~lv~~~G~~W~~IA~--l---~GRT~~QCr~Rw~~lL 103 (400)
....-|..|..-|..||..||.++..++. - .-.|+.||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 34567888999999999999999988887 2 3499999999887764
No 90
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=21.01 E-value=56 Score=36.12 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=40.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhh
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWY 50 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~ 50 (400)
..++||..|-++...+...+|. +.+.|+..++.|+..|++..|.
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs-~~slis~l~p~R~rk~iK~K~~ 451 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGS-DFSLISNLFPLRDRKQIKAKFK 451 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcc-cccccccccccccHHHHHHHHh
Confidence 4578999999999999999998 9999999999999999998774
No 91
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=20.88 E-value=36 Score=26.24 Aligned_cols=26 Identities=31% Similarity=0.664 Sum_probs=20.5
Q ss_pred CcccccccCC--CChHHHHHHHHHHHhH
Q 047012 80 QWRTIAPIVG--RTPSQCLERYEKLLDA 105 (400)
Q Consensus 80 ~W~~IA~l~G--RT~~QCr~Rw~~lL~~ 105 (400)
-|..|+..+| -+...|+.+|.++.+.
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 3888888445 6788999999998764
Done!