Query 047012
Match_columns 400
No_of_seqs 432 out of 2300
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 2.3E-40 8E-45 296.2 7.9 153 4-187 3-158 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 1.4E-32 4.8E-37 237.9 7.7 124 33-187 1-127 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.1E-30 3.8E-35 218.4 8.9 102 5-106 2-104 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.6E-30 9E-35 217.6 9.6 103 7-109 1-104 (107)
5 3zqc_A MYB3; transcription-DNA 100.0 3.8E-30 1.3E-34 223.8 9.8 105 7-111 2-107 (131)
6 3osg_A MYB21; transcription-DN 100.0 1.5E-29 5.2E-34 218.8 9.9 103 3-106 7-110 (126)
7 1h8a_C AMV V-MYB, MYB transfor 100.0 1.7E-29 5.8E-34 218.5 9.2 105 2-106 22-127 (128)
8 1h89_C C-MYB, MYB proto-oncoge 99.9 3.5E-27 1.2E-31 210.8 8.8 104 2-105 53-157 (159)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 6.2E-25 2.1E-29 183.5 8.4 100 57-187 2-104 (105)
10 3osg_A MYB21; transcription-DN 99.9 2.8E-24 9.5E-29 185.8 10.1 102 54-186 6-109 (126)
11 3zqc_A MYB3; transcription-DNA 99.9 3.2E-24 1.1E-28 186.4 9.7 98 59-187 2-102 (131)
12 2k9n_A MYB24; R2R3 domain, DNA 99.9 2.3E-24 7.8E-29 181.3 8.3 98 59-187 1-101 (107)
13 2dim_A Cell division cycle 5-l 99.8 2E-20 6.8E-25 146.3 5.8 65 3-67 5-69 (70)
14 2dim_A Cell division cycle 5-l 99.6 2.5E-17 8.5E-22 128.7 2.1 58 54-111 4-63 (70)
15 2din_A Cell division cycle 5-l 99.6 1.3E-16 4.3E-21 123.3 4.6 60 52-111 2-61 (66)
16 2d9a_A B-MYB, MYB-related prot 99.6 4.4E-16 1.5E-20 118.0 6.5 57 2-58 3-59 (60)
17 1gvd_A MYB proto-oncogene prot 99.6 2.7E-16 9.2E-21 115.9 5.0 52 5-56 1-52 (52)
18 1guu_A C-MYB, MYB proto-oncoge 99.6 3.1E-16 1.1E-20 115.5 4.7 52 5-56 1-52 (52)
19 1ign_A Protein (RAP1); RAP1,ye 99.6 5.6E-16 1.9E-20 147.0 5.2 103 4-106 5-200 (246)
20 2juh_A Telomere binding protei 99.6 1.3E-15 4.6E-20 131.5 4.9 81 3-83 13-103 (121)
21 2d9a_A B-MYB, MYB-related prot 99.6 9.8E-16 3.4E-20 116.1 3.3 55 54-108 3-59 (60)
22 1ity_A TRF1; helix-turn-helix, 99.6 2.5E-15 8.7E-20 117.0 5.5 61 3-63 6-68 (69)
23 2llk_A Cyclin-D-binding MYB-li 99.5 1.3E-15 4.6E-20 120.8 2.5 59 44-103 8-67 (73)
24 2juh_A Telomere binding protei 99.5 2.5E-15 8.6E-20 129.8 4.4 82 53-164 11-103 (121)
25 2roh_A RTBP1, telomere binding 99.5 6.3E-15 2.2E-19 127.4 6.8 77 4-80 28-114 (122)
26 3sjm_A Telomeric repeat-bindin 99.5 4.5E-15 1.6E-19 114.7 4.5 55 4-58 8-64 (64)
27 1guu_A C-MYB, MYB proto-oncoge 99.5 2.8E-15 9.7E-20 110.3 3.0 49 57-105 1-51 (52)
28 1gvd_A MYB proto-oncogene prot 99.5 3.2E-15 1.1E-19 110.1 3.1 49 57-105 1-51 (52)
29 1x41_A Transcriptional adaptor 99.5 1.1E-14 3.7E-19 110.7 6.0 54 3-56 4-57 (60)
30 1ity_A TRF1; helix-turn-helix, 99.5 1.2E-14 4.1E-19 113.2 4.5 59 53-111 4-66 (69)
31 1w0t_A Telomeric repeat bindin 99.5 1.7E-14 5.9E-19 106.8 4.7 49 6-54 1-51 (53)
32 2elk_A SPCC24B10.08C protein; 99.5 2.9E-14 9.8E-19 107.8 5.6 51 3-53 5-56 (58)
33 2cu7_A KIAA1915 protein; nucle 99.5 3.1E-14 1.1E-18 111.8 4.9 57 53-109 3-60 (72)
34 2din_A Cell division cycle 5-l 99.5 1.3E-14 4.4E-19 112.0 2.5 58 1-60 3-60 (66)
35 2roh_A RTBP1, telomere binding 99.5 3.2E-14 1.1E-18 123.0 5.2 79 55-164 27-117 (122)
36 1ign_A Protein (RAP1); RAP1,ye 99.4 1.9E-13 6.4E-18 129.8 9.5 129 55-187 4-200 (246)
37 2yum_A ZZZ3 protein, zinc fing 99.4 4.5E-14 1.5E-18 111.4 4.0 61 2-62 3-68 (75)
38 1x41_A Transcriptional adaptor 99.4 4.7E-14 1.6E-18 107.2 3.9 52 54-105 3-56 (60)
39 3sjm_A Telomeric repeat-bindin 99.4 5.1E-14 1.7E-18 108.8 3.7 51 57-107 9-63 (64)
40 1w0t_A Telomeric repeat bindin 99.4 7.2E-14 2.5E-18 103.4 3.7 47 58-104 1-51 (53)
41 2yum_A ZZZ3 protein, zinc fing 99.4 1.4E-13 4.9E-18 108.5 4.9 58 54-111 3-67 (75)
42 2cu7_A KIAA1915 protein; nucle 99.4 1.8E-13 6E-18 107.5 3.6 57 2-59 4-60 (72)
43 2elk_A SPCC24B10.08C protein; 99.4 3.2E-13 1.1E-17 102.0 4.3 49 55-103 5-56 (58)
44 2llk_A Cyclin-D-binding MYB-li 99.3 1.9E-12 6.6E-17 102.6 6.1 54 2-58 18-71 (73)
45 2ltp_A Nuclear receptor corepr 98.9 4.1E-13 1.4E-17 109.9 0.0 54 52-105 9-63 (89)
46 2yus_A SWI/SNF-related matrix- 99.2 7E-12 2.4E-16 100.6 5.6 48 4-52 15-62 (79)
47 2ckx_A NGTRF1, telomere bindin 99.2 1.2E-11 4.1E-16 100.3 6.7 68 8-75 1-78 (83)
48 2aje_A Telomere repeat-binding 99.2 6.7E-12 2.3E-16 105.9 5.1 52 54-105 8-65 (105)
49 2ckx_A NGTRF1, telomere bindin 99.2 3.8E-11 1.3E-15 97.3 6.5 74 60-158 1-80 (83)
50 2ltp_A Nuclear receptor corepr 98.8 3E-12 1E-16 104.7 0.0 52 2-54 11-62 (89)
51 2aje_A Telomere repeat-binding 99.1 2.6E-11 8.9E-16 102.3 5.2 74 3-76 9-92 (105)
52 2cqr_A RSGI RUH-043, DNAJ homo 99.1 2.1E-11 7.1E-16 96.7 3.8 50 55-104 14-68 (73)
53 2cqr_A RSGI RUH-043, DNAJ homo 99.1 1.4E-11 4.8E-16 97.6 2.2 51 4-54 15-68 (73)
54 2yus_A SWI/SNF-related matrix- 99.1 2.3E-11 7.7E-16 97.7 2.6 47 56-102 15-62 (79)
55 2cjj_A Radialis; plant develop 98.9 5.9E-10 2E-14 92.1 3.8 48 6-53 7-57 (93)
56 2cjj_A Radialis; plant develop 98.8 1.4E-09 4.7E-14 89.9 3.7 49 58-106 7-60 (93)
57 2eqr_A N-COR1, N-COR, nuclear 98.7 7.4E-09 2.5E-13 78.8 4.8 48 6-54 11-58 (61)
58 1x58_A Hypothetical protein 49 98.7 8.2E-09 2.8E-13 79.3 4.7 49 57-105 6-58 (62)
59 1x58_A Hypothetical protein 49 98.6 3.2E-08 1.1E-12 76.0 3.6 48 6-54 7-57 (62)
60 2eqr_A N-COR1, N-COR, nuclear 98.5 4.5E-08 1.5E-12 74.5 4.1 46 58-103 11-57 (61)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.5 9.8E-08 3.4E-12 75.3 4.6 50 4-54 5-57 (72)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.5 6.8E-08 2.3E-12 76.2 3.4 50 56-105 5-58 (72)
63 1wgx_A KIAA1903 protein; MYB D 98.5 1.9E-07 6.6E-12 73.9 5.6 51 4-54 5-58 (73)
64 2iw5_B Protein corest, REST co 98.3 4.2E-07 1.4E-11 85.8 5.2 48 6-54 132-179 (235)
65 3hm5_A DNA methyltransferase 1 98.3 5.5E-07 1.9E-11 74.4 4.5 64 43-110 18-87 (93)
66 2xag_B REST corepressor 1; ami 98.2 3.1E-07 1.1E-11 95.1 2.8 44 60-103 381-425 (482)
67 2iw5_B Protein corest, REST co 98.2 1.6E-06 5.4E-11 81.9 5.5 76 29-105 104-180 (235)
68 1fex_A TRF2-interacting telome 98.1 1.4E-06 4.9E-11 66.1 3.5 48 7-54 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 97.9 5.5E-06 1.9E-10 65.6 3.3 46 59-104 8-58 (73)
70 2yqk_A Arginine-glutamic acid 97.9 1.2E-05 4E-10 61.6 4.7 51 2-53 4-55 (63)
71 1fex_A TRF2-interacting telome 97.8 6.9E-06 2.4E-10 62.3 2.8 46 59-104 2-58 (59)
72 4eef_G F-HB80.4, designed hema 97.8 2.7E-06 9.3E-11 67.3 0.2 44 7-50 20-66 (74)
73 1ofc_X ISWI protein; nuclear p 97.5 6.2E-05 2.1E-09 74.0 5.1 98 8-105 111-275 (304)
74 2xag_B REST corepressor 1; ami 97.5 7.8E-05 2.7E-09 77.3 5.2 45 7-52 380-424 (482)
75 4a69_C Nuclear receptor corepr 97.5 8E-05 2.7E-09 61.3 4.1 45 8-53 44-88 (94)
76 2crg_A Metastasis associated p 97.5 9.6E-05 3.3E-09 57.7 4.1 45 8-53 9-54 (70)
77 4eef_G F-HB80.4, designed hema 97.4 6.7E-05 2.3E-09 59.3 2.6 42 59-100 20-66 (74)
78 3hm5_A DNA methyltransferase 1 97.4 0.00013 4.6E-09 60.1 4.2 49 4-53 27-80 (93)
79 2yqk_A Arginine-glutamic acid 97.2 0.00029 1E-08 53.7 4.5 48 55-102 5-54 (63)
80 2lr8_A CAsp8-associated protei 96.1 8.6E-05 2.9E-09 57.9 0.0 46 60-105 15-63 (70)
81 4a69_C Nuclear receptor corepr 96.7 0.00088 3E-08 55.0 3.6 43 59-101 43-86 (94)
82 1ug2_A 2610100B20RIK gene prod 96.7 0.00097 3.3E-08 54.7 3.5 48 60-107 34-85 (95)
83 2ebi_A DNA binding protein GT- 96.5 0.0011 3.7E-08 53.0 2.4 48 6-53 3-63 (86)
84 4iej_A DNA methyltransferase 1 96.5 0.0025 8.6E-08 52.5 4.5 59 47-109 22-86 (93)
85 1ug2_A 2610100B20RIK gene prod 96.5 0.0023 7.7E-08 52.6 4.1 44 9-52 35-80 (95)
86 4b4c_A Chromodomain-helicase-D 96.4 0.0024 8.1E-08 58.5 4.2 37 8-44 8-48 (211)
87 2crg_A Metastasis associated p 96.3 0.0033 1.1E-07 48.9 3.8 43 59-101 8-52 (70)
88 2ebi_A DNA binding protein GT- 96.3 0.0013 4.4E-08 52.5 1.5 48 59-106 4-66 (86)
89 2lr8_A CAsp8-associated protei 95.1 0.00098 3.4E-08 52.0 0.0 45 9-54 16-62 (70)
90 2y9y_A Imitation switch protei 95.4 0.024 8.1E-07 57.2 6.7 99 8-106 124-292 (374)
91 4iej_A DNA methyltransferase 1 95.0 0.021 7E-07 47.1 4.2 49 4-53 27-80 (93)
92 4b4c_A Chromodomain-helicase-D 94.3 0.14 4.8E-06 46.6 8.5 48 58-105 6-59 (211)
93 1ofc_X ISWI protein; nuclear p 91.8 0.11 3.9E-06 50.9 4.0 47 6-52 211-272 (304)
94 2xb0_X Chromo domain-containin 87.9 0.37 1.3E-05 46.5 3.9 28 8-35 169-196 (270)
95 1irz_A ARR10-B; helix-turn-hel 84.3 1.3 4.5E-05 33.9 4.6 47 6-52 6-56 (64)
96 2y9y_A Imitation switch protei 83.5 1.1 3.7E-05 45.1 5.0 44 6-49 227-285 (374)
97 1irz_A ARR10-B; helix-turn-hel 73.7 3.9 0.00013 31.2 4.3 48 57-104 5-58 (64)
98 2xb0_X Chromo domain-containin 69.1 1.7 5.7E-05 42.0 1.6 27 60-86 169-196 (270)
99 2li6_A SWI/SNF chromatin-remod 50.0 8.9 0.00031 31.9 2.6 39 17-55 53-98 (116)
100 2rq5_A Protein jumonji; develo 39.5 17 0.00057 30.8 2.7 56 17-75 46-113 (121)
101 1ig6_A MRF-2, modulator recogn 38.8 20 0.0007 29.1 3.1 40 16-55 36-87 (107)
102 2jrz_A Histone demethylase jar 34.0 35 0.0012 28.3 3.8 39 17-55 44-93 (117)
103 2jxj_A Histone demethylase jar 32.9 31 0.0011 27.3 3.2 38 17-54 40-88 (96)
104 2jvw_A Uncharacterized protein 31.1 26 0.0009 28.2 2.4 46 15-72 18-70 (88)
105 2rq5_A Protein jumonji; develo 30.6 59 0.002 27.3 4.7 39 69-107 46-98 (121)
106 2cxy_A BAF250B subunit, HBAF25 28.8 42 0.0014 28.1 3.4 38 17-54 55-103 (125)
107 2p1m_A SKP1-like protein 1A; F 27.5 46 0.0016 28.8 3.6 35 31-72 119-153 (160)
108 2lm1_A Lysine-specific demethy 26.9 42 0.0014 27.1 3.0 38 17-54 48-96 (107)
109 3i4p_A Transcriptional regulat 25.4 32 0.0011 29.4 2.2 45 65-109 3-48 (162)
110 2eqy_A RBP2 like, jumonji, at 25.2 51 0.0017 27.5 3.3 38 17-54 46-94 (122)
111 2li6_A SWI/SNF chromatin-remod 25.0 27 0.00093 28.9 1.6 38 69-106 53-99 (116)
112 2kk0_A AT-rich interactive dom 24.4 47 0.0016 28.6 3.0 39 17-55 68-118 (145)
113 2lm1_A Lysine-specific demethy 24.0 34 0.0012 27.6 2.0 39 68-106 47-98 (107)
114 3ulq_B Transcriptional regulat 21.2 1.2E+02 0.0042 23.4 4.7 46 139-186 26-71 (90)
115 1kkx_A Transcription regulator 21.2 40 0.0014 28.3 1.9 40 69-108 52-100 (123)
116 1je8_A Nitrate/nitrite respons 21.1 96 0.0033 23.3 3.9 43 142-186 21-63 (82)
117 2ast_A S-phase kinase-associat 21.0 69 0.0024 27.4 3.4 35 31-72 120-154 (159)
118 1kkx_A Transcription regulator 20.5 30 0.001 29.1 0.9 38 17-54 52-96 (123)
119 1c20_A DEAD ringer protein; DN 20.4 76 0.0026 26.5 3.5 39 17-55 56-106 (128)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=2.3e-40 Score=296.20 Aligned_cols=153 Identities=29% Similarity=0.561 Sum_probs=107.4
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCC-Ccc
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPT-QWR 82 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~-~W~ 82 (400)
.+++|+||+|||++|+.+|.+||.++|..||..|++|++.||+.||.++|+|.+++++||+|||++|+.+|..||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 4788999999999999999999988999999999999999999999999999999999999999999999999995 799
Q ss_pred cccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCc
Q 047012 83 TIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANT 161 (400)
Q Consensus 83 ~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~peskpa~pd~~d~teeE~emL~ea~arlgn~ 161 (400)
.||. ++|||+.||++||.++|+|.+++++ ||++|+++|.+++..+|+.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~-------------------------------WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTS-------------------------------WTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSC-------------------------------CCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccC-------------------------------CChHHHHHHHHHHHHHCCC
Confidence 9999 7899999999999999999887765 9999999999999999999
Q ss_pred hhHHhcC-cCCchHHHHHHHHHHHHhH
Q 047012 162 RGKKAKR-KAREKQLEEARRLASLQKR 187 (400)
Q Consensus 162 w~kiAkr-k~R~~~~~k~r~~a~LqKr 187 (400)
|.+||+. +||+++.++|||+.+|+++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999 8999999999999888765
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=1.4e-32 Score=237.92 Aligned_cols=124 Identities=26% Similarity=0.549 Sum_probs=97.5
Q ss_pred HHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCC-Ccccccc-cCCCChHHHHHHHHHHHhHhhhcC
Q 047012 33 ISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPT-QWRTIAP-IVGRTPSQCLERYEKLLDAACAKD 110 (400)
Q Consensus 33 IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~-~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~ 110 (400)
||+.|++||+.||+.||.++|+|.+++++||+|||++|+.+|..||. +|..||. ++|||+.||++||.++|+|.++++
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 78999999999999999999999999999999999999999999995 7999999 889999999999999999988776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhcC-cCCchHHHHHHHHHHHHhH
Q 047012 111 ENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKR-KAREKQLEEARRLASLQKR 187 (400)
Q Consensus 111 ~~~~~~~d~~~Lr~gei~p~peskpa~pd~~d~teeE~emL~ea~arlgn~w~kiAkr-k~R~~~~~k~r~~a~LqKr 187 (400)
+ ||++|+++|.+++..+|+.|.+||+. +||+++.+++||+..|+++
T Consensus 81 ~-------------------------------WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 81 S-------------------------------WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp C-------------------------------CCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred c-------------------------------CCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 6 99999999999999999999999999 8999999999999887664
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.96 E-value=1.1e-30 Score=218.41 Aligned_cols=102 Identities=32% Similarity=0.655 Sum_probs=97.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccc
Q 047012 5 IKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTI 84 (400)
Q Consensus 5 lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~I 84 (400)
|++|+||++||++|+.+|.+||.++|..||.+|++||+.||+.||.++|+|.+++++||.|||.+|+.+|..||++|..|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 78999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cCCCChHHHHHHHHHHHhHh
Q 047012 85 AP-IVGRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 85 A~-l~GRT~~QCr~Rw~~lL~~~ 106 (400)
|. ++|||+.||++||+.+++..
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHcCCCCHHHHHHHHHHHHhcc
Confidence 99 88999999999999998753
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.96 E-value=2.6e-30 Score=217.62 Aligned_cols=103 Identities=25% Similarity=0.578 Sum_probs=99.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP 86 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~ 86 (400)
+|+||++||++|+.+|..||.++|..||..|++||+.||++||.++|+|.+++++||.|||.+|+.+|..||++|..||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 58999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCChHHHHHHHHHHHhHhhhc
Q 047012 87 -IVGRTPSQCLERYEKLLDAACAK 109 (400)
Q Consensus 87 -l~GRT~~QCr~Rw~~lL~~~i~k 109 (400)
++|||+.||++||..+++...+.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 89999999999999999876543
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.96 E-value=3.8e-30 Score=223.82 Aligned_cols=105 Identities=32% Similarity=0.684 Sum_probs=101.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP 86 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~ 86 (400)
+|+||++||++|+.+|..||.++|..||.+|++||+.||++||.++|+|.+++++||.|||++|+++|..||++|..||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 59999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCChHHHHHHHHHHHhHhhhcCC
Q 047012 87 -IVGRTPSQCLERYEKLLDAACAKDE 111 (400)
Q Consensus 87 -l~GRT~~QCr~Rw~~lL~~~i~k~~ 111 (400)
|+|||+.||++||+++|++.+..+.
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 7899999999999999999887664
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.96 E-value=1.5e-29 Score=218.84 Aligned_cols=103 Identities=34% Similarity=0.590 Sum_probs=99.1
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCcc
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWR 82 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~ 82 (400)
..+++|+||+|||++|+.+|.+||. +|..||..|++|++.||++||.++|+|.+++++||.|||++|+.+|..||.+|.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 4678999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-cCCCChHHHHHHHHHHHhHh
Q 047012 83 TIAP-IVGRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 83 ~IA~-l~GRT~~QCr~Rw~~lL~~~ 106 (400)
.||. ++|||+.||++||..+++..
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999 88999999999999998753
No 7
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=1.7e-29 Score=218.55 Aligned_cols=105 Identities=31% Similarity=0.644 Sum_probs=100.3
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCc
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQW 81 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W 81 (400)
.+.+++|+||++||++|+.+|.+||.++|..||.+|++||..||+.||.++|+|.+++++||.|||.+|+.+|..||++|
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W 101 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 101 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 56789999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-cCCCChHHHHHHHHHHHhHh
Q 047012 82 RTIAP-IVGRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 82 ~~IA~-l~GRT~~QCr~Rw~~lL~~~ 106 (400)
..||. ++|||+.||++||+.++...
T Consensus 102 ~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 102 AEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999 88999999999999988653
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.94 E-value=3.5e-27 Score=210.83 Aligned_cols=104 Identities=32% Similarity=0.630 Sum_probs=99.9
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCc
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQW 81 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W 81 (400)
.+.+++|+||++||+.|+.+|..||.++|..||.+|++||..||+.||.++|+|.+++++||.+||..|++++..||++|
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W 132 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 132 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCH
Confidence 45788999999999999999999998789999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-cCCCChHHHHHHHHHHHhH
Q 047012 82 RTIAP-IVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 82 ~~IA~-l~GRT~~QCr~Rw~~lL~~ 105 (400)
..||. ++|||+.||++||+.++..
T Consensus 133 ~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 133 AEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 99999 8899999999999998864
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.91 E-value=6.2e-25 Score=183.50 Aligned_cols=100 Identities=27% Similarity=0.509 Sum_probs=93.1
Q ss_pred CCcCCCCHHHHHHHHHHHHhCCC-Ccccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 57 IKKTEWTREEDEKLLHLAKLMPT-QWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESK 134 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G~-~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~pesk 134 (400)
+++++||+|||++|+.+|..||. +|..||. ++|||+.||++||.++|+|.+++++
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~----------------------- 58 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS----------------------- 58 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCC-----------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccC-----------------------
Confidence 67899999999999999999995 7999999 7899999999999999998887765
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhcC-cCCchHHHHHHHHHHHHhH
Q 047012 135 PARPDPVDMDEDEKEMLSEARARLANTRGKKAKR-KAREKQLEEARRLASLQKR 187 (400)
Q Consensus 135 pa~pd~~d~teeE~emL~ea~arlgn~w~kiAkr-k~R~~~~~k~r~~a~LqKr 187 (400)
||++|+++|.+++..+|+.|..||+. +||+++.+++||+..|+++
T Consensus 59 --------Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 59 --------WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp --------CCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred --------CCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999 8999999999999888764
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.90 E-value=2.8e-24 Score=185.83 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=95.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 54 DPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPE 132 (400)
Q Consensus 54 ~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~pe 132 (400)
.+..++++||+|||++|+.+|..||.+|..||. ++|||+.||++||.++|+|.+++++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~--------------------- 64 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTP--------------------- 64 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSC---------------------
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccccc---------------------
Confidence 356789999999999999999999999999999 7899999999999999999988876
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhcC-cCCchHHHHHHHHHHHHh
Q 047012 133 SKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKR-KAREKQLEEARRLASLQK 186 (400)
Q Consensus 133 skpa~pd~~d~teeE~emL~ea~arlgn~w~kiAkr-k~R~~~~~k~r~~a~LqK 186 (400)
||++|++.|.+++..+|+.|.+||+. +||+++.|++||+..++|
T Consensus 65 ----------WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 65 ----------WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp ----------CCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 899999999999877654
No 11
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.90 E-value=3.2e-24 Score=186.42 Aligned_cols=98 Identities=28% Similarity=0.383 Sum_probs=93.9
Q ss_pred cCCCCHHHHHHHHHHHHhCC-CCcccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 59 KTEWTREEDEKLLHLAKLMP-TQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPA 136 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~peskpa 136 (400)
+|+||+|||++|+.+|..|| .+|..||. ++|||+.||++||.++|+|.+++++
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~------------------------- 56 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHA------------------------- 56 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSC-------------------------
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCC-------------------------
Confidence 68999999999999999999 78999999 7899999999999999999988876
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCchhHHhcC-cCCchHHHHHHHHHHHHhH
Q 047012 137 RPDPVDMDEDEKEMLSEARARLANTRGKKAKR-KAREKQLEEARRLASLQKR 187 (400)
Q Consensus 137 ~pd~~d~teeE~emL~ea~arlgn~w~kiAkr-k~R~~~~~k~r~~a~LqKr 187 (400)
||++|+++|.+++..+|+.|..||+. +||+++.|++||+..|.++
T Consensus 57 ------Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 57 ------WTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp ------CCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred ------CCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8999999999999998877
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.90 E-value=2.3e-24 Score=181.32 Aligned_cols=98 Identities=28% Similarity=0.420 Sum_probs=92.5
Q ss_pred cCCCCHHHHHHHHHHHHhCCC-Ccccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 59 KTEWTREEDEKLLHLAKLMPT-QWRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPA 136 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~-~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~peskpa 136 (400)
+++||+|||++|+.+|..||. +|..||. ++|||+.||++||.++|+|.+++++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~------------------------- 55 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDP------------------------- 55 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCC-------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccc-------------------------
Confidence 589999999999999999995 8999999 8899999999999999999888776
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCchhHHhcC-cCCchHHHHHHHHHHHHhH
Q 047012 137 RPDPVDMDEDEKEMLSEARARLANTRGKKAKR-KAREKQLEEARRLASLQKR 187 (400)
Q Consensus 137 ~pd~~d~teeE~emL~ea~arlgn~w~kiAkr-k~R~~~~~k~r~~a~LqKr 187 (400)
||++|+++|.+++..+|+.|.+||+. +||+++.+++||+..+++.
T Consensus 56 ------WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 56 ------WSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp ------CCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred ------cCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999 8999999999999887664
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=146.31 Aligned_cols=65 Identities=82% Similarity=1.339 Sum_probs=63.1
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHH
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREED 67 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EED 67 (400)
+.+++|+||++||++|+.+|.+||.++|..||.+|++||+.||+.||.++|+|.+++++||.|||
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 57899999999999999999999988999999999999999999999999999999999999998
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-17 Score=128.67 Aligned_cols=58 Identities=31% Similarity=0.451 Sum_probs=55.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cCCCChHHHHHHHHHHHhHhhhcCC
Q 047012 54 DPSIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDE 111 (400)
Q Consensus 54 ~p~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~ 111 (400)
.|.+++++||+|||++|+.+|..|| ++|..||. ++|||+.||++||+++|+|.+++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~ 63 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTE 63 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCC
Confidence 5678999999999999999999999 79999999 8899999999999999999999886
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=123.30 Aligned_cols=60 Identities=72% Similarity=1.098 Sum_probs=58.0
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccccCCCChHHHHHHHHHHHhHhhhcCC
Q 047012 52 WLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDE 111 (400)
Q Consensus 52 ~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~l~GRT~~QCr~Rw~~lL~~~i~k~~ 111 (400)
+|+|.+++++||.|||++|+++|..+|.+|..||.++|||+.||++||.++|++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccCcCHHHHHHHHHHHhChHhcCCC
Confidence 699999999999999999999999999999999999999999999999999999998875
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=4.4e-16 Score=117.98 Aligned_cols=57 Identities=26% Similarity=0.520 Sum_probs=53.9
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCC
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIK 58 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lk 58 (400)
.+.+++|+||++||++|+.+|.+||.++|..||.+|++||+.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 357899999999999999999999987999999999999999999999999999875
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=2.7e-16 Score=115.93 Aligned_cols=52 Identities=37% Similarity=0.764 Sum_probs=49.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCC
Q 047012 5 IKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPS 56 (400)
Q Consensus 5 lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~ 56 (400)
|++|+||++||++|+.+|.+||.++|..||..|++||..||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 6899999999999999999999878999999999999999999999999984
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=3.1e-16 Score=115.46 Aligned_cols=52 Identities=33% Similarity=0.679 Sum_probs=48.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCC
Q 047012 5 IKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPS 56 (400)
Q Consensus 5 lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~ 56 (400)
|++|+||++||++|+.+|.+||.++|..||..|++||+.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5889999999999999999999889999999999999999999999999984
No 19
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.59 E-value=5.6e-16 Score=147.00 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=89.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCC-----ChhHHHHHhcccchhhhhhhhhccCCCCCC--------------------
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKN-----QWARISSLLVRKSAKQCKARWYEWLDPSIK-------------------- 58 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~-----~W~~IA~~L~~RS~~QCr~RW~~~L~p~lk-------------------- 58 (400)
.+++++||+|||++|+.+|.+||.. .|..||.+|+|||..||+.||..+|.+.+.
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~i 84 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLI 84 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCce
Confidence 4678999999999999999999874 299999999999999999999999999886
Q ss_pred ---------cCCCCHHHHHHHHHHHHh---------------------------------CC------------------
Q 047012 59 ---------KTEWTREEDEKLLHLAKL---------------------------------MP------------------ 78 (400)
Q Consensus 59 ---------kg~WT~EEDekLl~lv~~---------------------------------~G------------------ 78 (400)
+..||.+||-.|...+.. ++
T Consensus 85 kis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 164 (246)
T 1ign_A 85 KTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQS 164 (246)
T ss_dssp EESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCC
T ss_pred eeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcccc
Confidence 789999999999998765 11
Q ss_pred -------CCcccccc-cCCCChHHHHHHHHHHHhHh
Q 047012 79 -------TQWRTIAP-IVGRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 79 -------~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~ 106 (400)
..|..||. +++||..+.|+||..+|...
T Consensus 165 ~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 165 RRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 15999999 99999999999999988654
No 20
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.56 E-value=1.3e-15 Score=131.46 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=75.9
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHh----cccchhhhhhhhhccCC-----CCCCcC-CCCHHHHHHHHH
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLL----VRKSAKQCKARWYEWLD-----PSIKKT-EWTREEDEKLLH 72 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L----~~RS~~QCr~RW~~~L~-----p~lkkg-~WT~EEDekLl~ 72 (400)
...++++||.+||+.|+.+|.+||.++|..|+..+ ++||..||++||.+++. |.++++ +|+.+|+.+|+.
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~ 92 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLA 92 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHH
Confidence 45688999999999999999999998999999985 89999999999999987 999999 999999999999
Q ss_pred HHHhCCCCccc
Q 047012 73 LAKLMPTQWRT 83 (400)
Q Consensus 73 lv~~~G~~W~~ 83 (400)
+...+|++|..
T Consensus 93 ~h~~~gn~~~~ 103 (121)
T 2juh_A 93 AHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHccchhc
Confidence 99999998876
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=9.8e-16 Score=116.07 Aligned_cols=55 Identities=33% Similarity=0.591 Sum_probs=51.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cCCCChHHHHHHHHHHHhHhhh
Q 047012 54 DPSIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IVGRTPSQCLERYEKLLDAACA 108 (400)
Q Consensus 54 ~p~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~ 108 (400)
+|.+++++||+|||++|+++|..|| ++|..||. |+|||+.||++||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 69999999 8899999999999999998764
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.56 E-value=2.5e-15 Score=117.03 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=57.0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc--ccchhhhhhhhhccCCCCCCcCCCC
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLV--RKSAKQCKARWYEWLDPSIKKTEWT 63 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~--~RS~~QCr~RW~~~L~p~lkkg~WT 63 (400)
...++++||++||++|+.+|.+||.++|..||..|+ +||+.||++||.++|+|.+.++.++
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 456889999999999999999999889999999999 9999999999999999999988764
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-15 Score=120.76 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=46.0
Q ss_pred hhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHH
Q 047012 44 QCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLL 103 (400)
Q Consensus 44 QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL 103 (400)
...-||.++|+|.+++++||+|||++|+++|..+|++|+.||+ + |||+.||++||+.+.
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999 7 999999999998654
No 24
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.54 E-value=2.5e-15 Score=129.77 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHhCCC-Ccccccc-c----CCCChHHHHHHHHHHHhH-----hhhcCCCCCCCCCCCC
Q 047012 53 LDPSIKKTEWTREEDEKLLHLAKLMPT-QWRTIAP-I----VGRTPSQCLERYEKLLDA-----ACAKDENYEPGDDPRK 121 (400)
Q Consensus 53 L~p~lkkg~WT~EEDekLl~lv~~~G~-~W~~IA~-l----~GRT~~QCr~Rw~~lL~~-----~i~k~~~~~~~~d~~~ 121 (400)
+.+..++++||.|||+.|+++|..||. +|+.|+. + +|||+.+|++||.++++. .++++
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg----------- 79 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG----------- 79 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC-----------
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC-----------
Confidence 556788999999999999999999995 9999998 3 699999999999999983 33322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCchhH
Q 047012 122 LRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGK 164 (400)
Q Consensus 122 Lr~gei~p~peskpa~pd~~d~teeE~emL~ea~arlgn~w~k 164 (400)
..|+++|++.|.+|++.+||.|++
T Consensus 80 -------------------~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 80 -------------------EPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp -------------------SCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred -------------------CCCCHHHHHHHHHHHHHHccchhc
Confidence 128899999999999999999987
No 25
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.54 E-value=6.3e-15 Score=127.43 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=71.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHh----cccchhhhhhhhhccC-----CCCCCcCCCCHHH-HHHHHHH
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLL----VRKSAKQCKARWYEWL-----DPSIKKTEWTREE-DEKLLHL 73 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L----~~RS~~QCr~RW~~~L-----~p~lkkg~WT~EE-DekLl~l 73 (400)
.-++++||.|||+.|+.+|.+||.++|..|+..+ ++||..||++||.+++ +|.++++.|+++| +.+|+.+
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~ 107 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAA 107 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHH
Confidence 3468999999999999999999999999999975 7999999999999998 8999999999999 8999999
Q ss_pred HHhCCCC
Q 047012 74 AKLMPTQ 80 (400)
Q Consensus 74 v~~~G~~ 80 (400)
...+|+.
T Consensus 108 h~~~g~~ 114 (122)
T 2roh_A 108 QAYWSVD 114 (122)
T ss_dssp HHHHHSS
T ss_pred HHHHhhH
Confidence 9998863
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=4.5e-15 Score=114.68 Aligned_cols=55 Identities=33% Similarity=0.534 Sum_probs=49.7
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc--ccchhhhhhhhhccCCCCCC
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLV--RKSAKQCKARWYEWLDPSIK 58 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~--~RS~~QCr~RW~~~L~p~lk 58 (400)
..|+++||+|||++|+.+|.+||.++|..||..++ +||+.||++||.+++.|+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45889999999999999999999889999999866 99999999999999988764
No 27
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.52 E-value=2.8e-15 Score=110.33 Aligned_cols=49 Identities=47% Similarity=0.803 Sum_probs=45.4
Q ss_pred CCcCCCCHHHHHHHHHHHHhCCC-Ccccccc-cCCCChHHHHHHHHHHHhH
Q 047012 57 IKKTEWTREEDEKLLHLAKLMPT-QWRTIAP-IVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G~-~W~~IA~-l~GRT~~QCr~Rw~~lL~~ 105 (400)
+++++||+|||++|+++|..||. +|..||. ++|||+.||++||.++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 9999999 8899999999999999987
No 28
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.52 E-value=3.2e-15 Score=110.12 Aligned_cols=49 Identities=37% Similarity=0.742 Sum_probs=46.2
Q ss_pred CCcCCCCHHHHHHHHHHHHhCCC-Ccccccc-cCCCChHHHHHHHHHHHhH
Q 047012 57 IKKTEWTREEDEKLLHLAKLMPT-QWRTIAP-IVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G~-~W~~IA~-l~GRT~~QCr~Rw~~lL~~ 105 (400)
+++++||+|||++|+++|..||. +|..||. ++|||+.||++||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999996 7999999 8899999999999999986
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.1e-14 Score=110.70 Aligned_cols=54 Identities=19% Similarity=0.452 Sum_probs=50.9
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCC
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPS 56 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~ 56 (400)
..+++++||++||++|+.+|.+||.++|..||.+|++||+.||+.||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 468899999999999999999999889999999999999999999999999765
No 30
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.49 E-value=1.2e-14 Score=113.17 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=54.4
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cC--CCChHHHHHHHHHHHhHhhhcCC
Q 047012 53 LDPSIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IV--GRTPSQCLERYEKLLDAACAKDE 111 (400)
Q Consensus 53 L~p~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~--GRT~~QCr~Rw~~lL~~~i~k~~ 111 (400)
.++..++++||+|||++|+++|..|| ++|..||. ++ |||+.||++||.++|++.+.+..
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 45677899999999999999999999 69999999 88 99999999999999999988764
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=1.7e-14 Score=106.82 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=46.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc--ccchhhhhhhhhccCC
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKNQWARISSLLV--RKSAKQCKARWYEWLD 54 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~--~RS~~QCr~RW~~~L~ 54 (400)
|+|+||++||+.|+.+|.+||.++|..||..|+ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 689999999999999999999889999999999 9999999999998864
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=2.9e-14 Score=107.82 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=47.4
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc-ccchhhhhhhhhccC
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~-~RS~~QCr~RW~~~L 53 (400)
..+.+++||++||++|+.+|.+||.++|..||.+|+ +||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999999889999999999 999999999999864
No 33
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=3.1e-14 Score=111.81 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=54.3
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHHhHhhhc
Q 047012 53 LDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLLDAACAK 109 (400)
Q Consensus 53 L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k 109 (400)
.+|.+++++||.|||++|+++|..||.+|..||. ++|||+.||++||+++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999 89999999999999999998766
No 34
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-14 Score=112.01 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=53.3
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCcC
Q 047012 1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT 60 (400)
Q Consensus 1 Mr~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg 60 (400)
+.+.+++++||.+||++|+.+|..||. +|..||. |++||+.||+.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 467899999999999999999999997 9999999 888999999999999998876654
No 35
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.46 E-value=3.2e-14 Score=123.01 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhCCC-Ccccccc-c----CCCChHHHHHHHHHHHh-----HhhhcCCCCCCCCCCCCCC
Q 047012 55 PSIKKTEWTREEDEKLLHLAKLMPT-QWRTIAP-I----VGRTPSQCLERYEKLLD-----AACAKDENYEPGDDPRKLR 123 (400)
Q Consensus 55 p~lkkg~WT~EEDekLl~lv~~~G~-~W~~IA~-l----~GRT~~QCr~Rw~~lL~-----~~i~k~~~~~~~~d~~~Lr 123 (400)
...++++||.|||+.|+++|++||. +|+.|+. + .|||+.||++||.+++. |.++++.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~------------ 94 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGA------------ 94 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCS------------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCC------------
Confidence 3457899999999999999999995 9999998 3 79999999999999995 4433322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHhcCchhH
Q 047012 124 PGEIDPNPESKPARPDPVDMDEDE-KEMLSEARARLANTRGK 164 (400)
Q Consensus 124 ~gei~p~peskpa~pd~~d~teeE-~emL~ea~arlgn~w~k 164 (400)
|+++| ++.|.+|++.+||.+++
T Consensus 95 -------------------~~p~e~~~~v~~~h~~~g~~~~~ 117 (122)
T 2roh_A 95 -------------------PVPQELLDRVLAAQAYWSVDSSG 117 (122)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHSSCSC
T ss_pred -------------------CCCHHHHHHHHHHHHHHhhHHhh
Confidence 88888 78999999999998864
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.44 E-value=1.9e-13 Score=129.77 Aligned_cols=129 Identities=22% Similarity=0.215 Sum_probs=95.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhCCCC------cccccc-cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCC
Q 047012 55 PSIKKTEWTREEDEKLLHLAKLMPTQ------WRTIAP-IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEI 127 (400)
Q Consensus 55 p~lkkg~WT~EEDekLl~lv~~~G~~------W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei 127 (400)
+.+++++||+|||+.|+++|+++|+. |..||. ++|||+.||++||.++|.+.+... |..++|...++.-.-
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v--y~~ded~~Li~d~~G 81 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV--YEVDKFGKLVRDDDG 81 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE--ECBCTTSCBCBCTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc--cccCcchhhhhccCC
Confidence 35678999999999999999999874 999999 899999999999999999988633 444444444433221
Q ss_pred CCCCCCCCCCCC--CCCCCHHHHHHHHHHHHH---------------------------------hcC------------
Q 047012 128 DPNPESKPARPD--PVDMDEDEKEMLSEARAR---------------------------------LAN------------ 160 (400)
Q Consensus 128 ~p~peskpa~pd--~~d~teeE~emL~ea~ar---------------------------------lgn------------ 160 (400)
+ .--+. --|. ...|+.+|+-.|...... ++.
T Consensus 82 n-~ikis-~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 159 (246)
T 1ign_A 82 N-LIKTK-VLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAA 159 (246)
T ss_dssp C-BCEES-SCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC------------------------------
T ss_pred C-ceeee-ccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhh
Confidence 1 11111 1222 246999999999998876 222
Q ss_pred -------------chhHHhcC-cCCchHHHHHHHHHHHHhH
Q 047012 161 -------------TRGKKAKR-KAREKQLEEARRLASLQKR 187 (400)
Q Consensus 161 -------------~w~kiAkr-k~R~~~~~k~r~~a~LqKr 187 (400)
.|..||+. +.|+.+..++||...|.+.
T Consensus 160 ~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 160 YRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp -CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred hccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 89999999 9999999999998777544
No 37
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.5e-14 Score=111.42 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=55.0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCC-----CChhHHHHHhcccchhhhhhhhhccCCCCCCcCCC
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGK-----NQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEW 62 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~-----~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~W 62 (400)
.+.++++.||.|||++|+.+|.+||. ++|..||.+|++||..||+.||+++|.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999996 68999999999999999999999999877766543
No 38
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=4.7e-14 Score=107.17 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=48.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cCCCChHHHHHHHHHHHhH
Q 047012 54 DPSIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 54 ~p~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~GRT~~QCr~Rw~~lL~~ 105 (400)
.+.+.+++||+|||.+|+++|..|| ++|..||. ++|||+.||++||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 79999999 8899999999999999864
No 39
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.43 E-value=5.1e-14 Score=108.78 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=46.4
Q ss_pred CCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cC--CCChHHHHHHHHHHHhHhh
Q 047012 57 IKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IV--GRTPSQCLERYEKLLDAAC 107 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~--GRT~~QCr~Rw~~lL~~~i 107 (400)
.++++||+|||++|+++|..|| ++|..||. ++ |||+.||++||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999999999 69999998 54 8999999999999999865
No 40
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.42 E-value=7.2e-14 Score=103.45 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=44.3
Q ss_pred CcCCCCHHHHHHHHHHHHhCC-CCcccccc-cC--CCChHHHHHHHHHHHh
Q 047012 58 KKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IV--GRTPSQCLERYEKLLD 104 (400)
Q Consensus 58 kkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~--GRT~~QCr~Rw~~lL~ 104 (400)
++++||+|||+.|+++|..|| ++|..||. ++ |||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999999 69999999 88 8999999999999985
No 41
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=108.53 Aligned_cols=58 Identities=28% Similarity=0.357 Sum_probs=53.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhCC------CCcccccc-cCCCChHHHHHHHHHHHhHhhhcCC
Q 047012 54 DPSIKKTEWTREEDEKLLHLAKLMP------TQWRTIAP-IVGRTPSQCLERYEKLLDAACAKDE 111 (400)
Q Consensus 54 ~p~lkkg~WT~EEDekLl~lv~~~G------~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~i~k~~ 111 (400)
+|.+.+++||.|||++|+++|..|| .+|..||. ++|||+.||++||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 68999999 8899999999999999998776553
No 42
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=1.8e-13 Score=107.51 Aligned_cols=57 Identities=21% Similarity=0.412 Sum_probs=52.2
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCCc
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKK 59 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkk 59 (400)
.+.+++|+||.+||++|+.+|..||. +|..||.+|++||..||+.||+.+|.+.++.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999997 9999999999999999999999998765544
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.36 E-value=3.2e-13 Score=102.02 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=45.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhCC-CCcccccc-cC-CCChHHHHHHHHHHH
Q 047012 55 PSIKKTEWTREEDEKLLHLAKLMP-TQWRTIAP-IV-GRTPSQCLERYEKLL 103 (400)
Q Consensus 55 p~lkkg~WT~EEDekLl~lv~~~G-~~W~~IA~-l~-GRT~~QCr~Rw~~lL 103 (400)
..+.+++||++||.+|+++|..|| ++|..||. ++ |||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 89999999 78 899999999999875
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=102.61 Aligned_cols=54 Identities=28% Similarity=0.312 Sum_probs=47.4
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCCCC
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIK 58 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~lk 58 (400)
.+.+++|+||+|||++|+.+|.+||. .|..||..| +||..||+.||+. |....+
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 56889999999999999999999997 699999999 9999999999985 443333
No 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.92 E-value=4.1e-13 Score=109.85 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=51.0
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHHhH
Q 047012 52 WLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 52 ~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL~~ 105 (400)
.++|.+++++||.|||++|+++|..||.+|..||. ++|||+.||++||+++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 46788999999999999999999999999999999 8899999999999999875
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.24 E-value=7e-12 Score=100.65 Aligned_cols=48 Identities=19% Similarity=0.479 Sum_probs=45.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhcc
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEW 52 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~ 52 (400)
...+++||.+||++|+.+|.+|| ++|..||.+|++||..||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 34579999999999999999999 7999999999999999999999987
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.23 E-value=1.2e-11 Score=100.30 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHH----hcccchhhhhhhhhccC-----CCCCCc-CCCCHHHHHHHHHHHH
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISSL----LVRKSAKQCKARWYEWL-----DPSIKK-TEWTREEDEKLLHLAK 75 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~~----L~~RS~~QCr~RW~~~L-----~p~lkk-g~WT~EEDekLl~lv~ 75 (400)
++||.+||+.|+.+|.+||.++|..|+.. |++||..||++||.+++ +|.+++ .+...+...+++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999996 89999999999999987 676555 4577777777777654
No 48
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.22 E-value=6.7e-12 Score=105.94 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=46.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhCCC-Ccccccc-c----CCCChHHHHHHHHHHHhH
Q 047012 54 DPSIKKTEWTREEDEKLLHLAKLMPT-QWRTIAP-I----VGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 54 ~p~lkkg~WT~EEDekLl~lv~~~G~-~W~~IA~-l----~GRT~~QCr~Rw~~lL~~ 105 (400)
....++++||.|||+.|+.+|.+||. +|+.|+. + +|||+.+|++||.+++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34567899999999999999999995 9999998 4 699999999999999964
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.16 E-value=3.8e-11 Score=97.31 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHhCCC-Ccccccc-----cCCCChHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 047012 60 TEWTREEDEKLLHLAKLMPT-QWRTIAP-----IVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPES 133 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~G~-~W~~IA~-----l~GRT~~QCr~Rw~~lL~~~i~k~~~~~~~~d~~~Lr~gei~p~pes 133 (400)
.+||.|||+.|+.+|.+||. +|+.|+. |+|||+.+|++||.+++........ .+.|
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~----------~~~~-------- 62 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ----------QRRG-------- 62 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGG----------GCCS--------
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcc----------cccC--------
Confidence 47999999999999999995 9999997 5799999999999999964321100 0000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHh
Q 047012 134 KPARPDPVDMDEDEKEMLSEARARL 158 (400)
Q Consensus 134 kpa~pd~~d~teeE~emL~ea~arl 158 (400)
..+.++..+.+..|++..
T Consensus 63 -------~~~p~~~~~rv~~~~a~~ 80 (83)
T 2ckx_A 63 -------EPVPQDLLDRVLAAHAYW 80 (83)
T ss_dssp -------SCCCHHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHH
Confidence 126688888888888854
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.78 E-value=3e-12 Score=104.70 Aligned_cols=52 Identities=21% Similarity=0.470 Sum_probs=48.8
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCC
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
.+.+++|+||.+||++|+.+|..||. +|..||.+|++||..||+.||+.+|.
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 35788999999999999999999997 89999999999999999999999875
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.15 E-value=2.6e-11 Score=102.35 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=62.9
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHh----cccchhhhhhhhhccC-----CCCCCcCCCCHHHHHH-HHH
Q 047012 3 IMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLL----VRKSAKQCKARWYEWL-----DPSIKKTEWTREEDEK-LLH 72 (400)
Q Consensus 3 ~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L----~~RS~~QCr~RW~~~L-----~p~lkkg~WT~EEDek-Ll~ 72 (400)
...++++||.|||+.|+.+|.+||.++|..|+..+ ++||..+|++||.+++ +|.++++.=++.|--. +++
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~ 88 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLN 88 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999965 8999999999999988 7889998888777433 555
Q ss_pred HHHh
Q 047012 73 LAKL 76 (400)
Q Consensus 73 lv~~ 76 (400)
|...
T Consensus 89 ~~~~ 92 (105)
T 2aje_A 89 AHGY 92 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 52
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.13 E-value=2.1e-11 Score=96.66 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=45.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhCC----CCcccccc-cCCCChHHHHHHHHHHHh
Q 047012 55 PSIKKTEWTREEDEKLLHLAKLMP----TQWRTIAP-IVGRTPSQCLERYEKLLD 104 (400)
Q Consensus 55 p~lkkg~WT~EEDekLl~lv~~~G----~~W~~IA~-l~GRT~~QCr~Rw~~lL~ 104 (400)
+...+++||.+||.+|+.++..|| .+|..||. ++|||..||++||.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999998 68999999 889999999999999875
No 53
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.12 E-value=1.4e-11 Score=97.62 Aligned_cols=51 Identities=22% Similarity=0.500 Sum_probs=46.6
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCC---CChhHHHHHhcccchhhhhhhhhccCC
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGK---NQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~---~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
.+.+++||.+||.+|..+|..||. ++|..||.+||+||..||+.||..++.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999993 489999999999999999999998764
No 54
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.10 E-value=2.3e-11 Score=97.68 Aligned_cols=47 Identities=23% Similarity=0.551 Sum_probs=44.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHH
Q 047012 56 SIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKL 102 (400)
Q Consensus 56 ~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~l 102 (400)
...+++||.+||.+|+++|..||++|..||. +.+||+.||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3567899999999999999999999999999 7789999999999988
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.91 E-value=5.9e-10 Score=92.13 Aligned_cols=48 Identities=19% Similarity=0.505 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC---CChhHHHHHhcccchhhhhhhhhccC
Q 047012 6 KGGVWKNTEDEILKAAVMKYGK---NQWARISSLLVRKSAKQCKARWYEWL 53 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~---~~W~~IA~~L~~RS~~QCr~RW~~~L 53 (400)
.++.||.+||++|..++..||. +.|..||.+|||||..||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3679999999999999999983 57999999999999999999998864
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.84 E-value=1.4e-09 Score=89.95 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=44.0
Q ss_pred CcCCCCHHHHHHHHHHHHhCC----CCcccccc-cCCCChHHHHHHHHHHHhHh
Q 047012 58 KKTEWTREEDEKLLHLAKLMP----TQWRTIAP-IVGRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 58 kkg~WT~EEDekLl~lv~~~G----~~W~~IA~-l~GRT~~QCr~Rw~~lL~~~ 106 (400)
.+++||.|||.+|..++..|| .+|..||. ++|||..||++||.+++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999 88999999999999998653
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=7.4e-09 Score=78.81 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=44.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCC
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
..++||++|++++..++..||. +|..||.+|++||..||..+|+.+..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 3579999999999999999996 99999999999999999999987643
No 58
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.73 E-value=8.2e-09 Score=79.28 Aligned_cols=49 Identities=29% Similarity=0.556 Sum_probs=44.9
Q ss_pred CCcCCCCHHHHHHHHHHHHhCCCCccccc---c-cCCCChHHHHHHHHHHHhH
Q 047012 57 IKKTEWTREEDEKLLHLAKLMPTQWRTIA---P-IVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G~~W~~IA---~-l~GRT~~QCr~Rw~~lL~~ 105 (400)
-++.+||+|||+.|++.|++||.+|..|+ + +.|||...+++||.++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46789999999999999999999999999 5 4699999999999999864
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.56 E-value=3.2e-08 Score=75.99 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=43.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChhHHHH---HhcccchhhhhhhhhccCC
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKNQWARISS---LLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~~W~~IA~---~L~~RS~~QCr~RW~~~L~ 54 (400)
++++||.|||+.|++.|.+||. +|..|+. ++++||.-.+++||+++..
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 5789999999999999999997 9999995 6789999999999998653
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.5e-08 Score=74.45 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=42.4
Q ss_pred CcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHH
Q 047012 58 KKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLL 103 (400)
Q Consensus 58 kkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL 103 (400)
...+||++|+.++++++..||.+|..||. ++|||..||..+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999 88999999999998654
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=9.8e-08 Score=75.27 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=44.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCC---CChhHHHHHhcccchhhhhhhhhccCC
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGK---NQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~---~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
..+.+.||.+||++|..++..|+. +.|..||.+| +||..||+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 356789999999999999999984 4799999998 7999999999987643
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=6.8e-08 Score=76.18 Aligned_cols=50 Identities=28% Similarity=0.481 Sum_probs=44.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHhCC----CCcccccccCCCChHHHHHHHHHHHhH
Q 047012 56 SIKKTEWTREEDEKLLHLAKLMP----TQWRTIAPIVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 56 ~lkkg~WT~EEDekLl~lv~~~G----~~W~~IA~l~GRT~~QCr~Rw~~lL~~ 105 (400)
+...+.||.|||.+|..++..|+ .+|..||.++|||..+|+.||..+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 479999996699999999999999765
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.45 E-value=1.9e-07 Score=73.90 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=45.6
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCC---CChhHHHHHhcccchhhhhhhhhccCC
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGK---NQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~---~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
+-....||.+|+.+|..++..|+. +.|..||.++++||..+|+.||..++.
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 344678999999999999999986 479999999999999999999998764
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.32 E-value=4.2e-07 Score=85.81 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=44.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCC
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
..++||.+|+.+++.++.+||. +|..||.+|++||..||+.+|+.+..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999996 99999999999999999999998754
No 65
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.28 E-value=5.5e-07 Score=74.40 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=56.9
Q ss_pred hhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc-c-----CCCChHHHHHHHHHHHhHhhhcC
Q 047012 43 KQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-I-----VGRTPSQCLERYEKLLDAACAKD 110 (400)
Q Consensus 43 ~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~-l-----~GRT~~QCr~Rw~~lL~~~i~k~ 110 (400)
.=|.++|..+|.+ .+||.||+..|++|++.++.+|..|+. + .+||..++++||..+...-+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4578999999875 899999999999999999999999999 6 47999999999999988766543
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.24 E-value=3.1e-07 Score=95.11 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHH
Q 047012 60 TEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLL 103 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL 103 (400)
..||.+|-.++++.+.+||.+|..||. +..||..||+..|+++-
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999 55699999999998754
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.16 E-value=1.6e-06 Score=81.92 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=54.7
Q ss_pred ChhHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHHHHhH
Q 047012 29 QWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 29 ~W~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~lL~~ 105 (400)
+|..+-..|.......+ .++...-......++||.+|+..+++++..||.+|..||. +.+||..||+.+|+++...
T Consensus 104 ~~kQ~~~~L~~~~~~~I-e~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 104 NIKQTNSALKEKLDGGI-EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHHHHSTTTT-GGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhhc-ccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45555555543333222 2333211112345789999999999999999999999999 7889999999999998754
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.12 E-value=1.4e-06 Score=66.06 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhHHHH-HhcccchhhhhhhhhccCC
Q 047012 7 GGVWKNTEDEILKAAVMKY--------GKNQWARISS-LLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~ky--------G~~~W~~IA~-~L~~RS~~QCr~RW~~~L~ 54 (400)
+.+||.+||.+|...|..| |..-|..++. .++++|..+|++||..+|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4589999999999999999 4447999999 7999999999999998774
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.91 E-value=5.5e-06 Score=65.55 Aligned_cols=46 Identities=26% Similarity=0.555 Sum_probs=41.2
Q ss_pred cCCCCHHHHHHHHHHHHhCC----CCcccccc-cCCCChHHHHHHHHHHHh
Q 047012 59 KTEWTREEDEKLLHLAKLMP----TQWRTIAP-IVGRTPSQCLERYEKLLD 104 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G----~~W~~IA~-l~GRT~~QCr~Rw~~lL~ 104 (400)
...||.+|+.+|..++..|+ .+|..||. ++|||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46899999999999998887 37999999 788999999999998864
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=1.2e-05 Score=61.57 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=45.5
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCChhHHHH-HhcccchhhhhhhhhccC
Q 047012 2 RIMIKGGVWKNTEDEILKAAVMKYGKNQWARISS-LLVRKSAKQCKARWYEWL 53 (400)
Q Consensus 2 r~~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~-~L~~RS~~QCr~RW~~~L 53 (400)
++.++...||++|-++...++.+||. +|..|+. +|++|+..||...|+.+-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 35677789999999999999999998 9999999 599999999999887654
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.85 E-value=6.9e-06 Score=62.25 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHhC--------CC-Ccccccc--cCCCChHHHHHHHHHHHh
Q 047012 59 KTEWTREEDEKLLHLAKLM--------PT-QWRTIAP--IVGRTPSQCLERYEKLLD 104 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~--------G~-~W~~IA~--l~GRT~~QCr~Rw~~lL~ 104 (400)
+.+||.|||..|+.+|..+ |+ -|..++. ++++|..+||+||.+.|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999888 32 4999998 678999999999999874
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.82 E-value=2.7e-06 Score=67.28 Aligned_cols=44 Identities=18% Similarity=0.466 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---ChhHHHHHhcccchhhhhhhhh
Q 047012 7 GGVWKNTEDEILKAAVMKYGKN---QWARISSLLVRKSAKQCKARWY 50 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~---~W~~IA~~L~~RS~~QCr~RW~ 50 (400)
.+.||.+|+++|..++..|+.+ .|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999864 7999999999999999999985
No 73
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.54 E-value=6.2e-05 Score=74.03 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=77.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhh-------hhhcc----------------------------
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKA-------RWYEW---------------------------- 52 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~-------RW~~~---------------------------- 52 (400)
+.||..+...+..++.+||.++|..||..|+++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999876532 22111
Q ss_pred --------------C-CCCCCcCCCCHHHHHHHHHHHHhCC----CCcccccc-------------cCCCChHHHHHHHH
Q 047012 53 --------------L-DPSIKKTEWTREEDEKLLHLAKLMP----TQWRTIAP-------------IVGRTPSQCLERYE 100 (400)
Q Consensus 53 --------------L-~p~lkkg~WT~EEDekLl~lv~~~G----~~W~~IA~-------------l~GRT~~QCr~Rw~ 100 (400)
+ .+..+...||.+||..|+-++..|| ++|..|.. +..||+.++..|-.
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 0 0223456799999999999998887 47999962 12699999999999
Q ss_pred HHHhH
Q 047012 101 KLLDA 105 (400)
Q Consensus 101 ~lL~~ 105 (400)
.++.-
T Consensus 271 tLi~~ 275 (304)
T 1ofc_X 271 TLITL 275 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 74
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.48 E-value=7.8e-05 Score=77.31 Aligned_cols=45 Identities=27% Similarity=0.481 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhcc
Q 047012 7 GGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEW 52 (400)
Q Consensus 7 kG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~ 52 (400)
..+||.+|-.+++.++.+||. +|..||.+|++||..||+..|..+
T Consensus 380 ~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHH
Confidence 579999999999999999997 999999999999999999999765
No 75
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.47 E-value=8e-05 Score=61.30 Aligned_cols=45 Identities=27% Similarity=0.512 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccC
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWL 53 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L 53 (400)
..||.+|.+++..++..||. +|..||..|++||..+|-..|+.+-
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCCCHHHHHHHHhccc
Confidence 57999999999999999997 9999999999999999999887653
No 76
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.45 E-value=9.6e-05 Score=57.66 Aligned_cols=45 Identities=29% Similarity=0.550 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHH-HhcccchhhhhhhhhccC
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISS-LLVRKSAKQCKARWYEWL 53 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~-~L~~RS~~QCr~RW~~~L 53 (400)
..||++|-.+...++.+||. +|..|+. +|++||..+|...|+.+-
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 57999999999999999998 8999999 699999999999887653
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.39 E-value=6.7e-05 Score=59.34 Aligned_cols=42 Identities=24% Similarity=0.533 Sum_probs=36.8
Q ss_pred cCCCCHHHHHHHHHHHHhCCC----Ccccccc-cCCCChHHHHHHHH
Q 047012 59 KTEWTREEDEKLLHLAKLMPT----QWRTIAP-IVGRTPSQCLERYE 100 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~----~W~~IA~-l~GRT~~QCr~Rw~ 100 (400)
.+.||.+|+..|-.++..|+. +|..||. ++|||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999999998873 7999999 88999999999885
No 78
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.37 E-value=0.00013 Score=60.13 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=44.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHh-----cccchhhhhhhhhccC
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLL-----VRKSAKQCKARWYEWL 53 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L-----~~RS~~QCr~RW~~~L 53 (400)
+|+.+.||.||++.|..++.+|+. .|..|+..+ ++||..+++.||+.+.
T Consensus 27 ~L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999997 999999999 5799999999998753
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00029 Score=53.72 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhCCCCcccccc--cCCCChHHHHHHHHHH
Q 047012 55 PSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP--IVGRTPSQCLERYEKL 102 (400)
Q Consensus 55 p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~--l~GRT~~QCr~Rw~~l 102 (400)
|.+....||++|-.+..+.+..||.+|..|+. +++||..+|..-|+..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 56778899999999999999999999999997 4679999999888643
No 80
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.13 E-value=8.6e-05 Score=57.88 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHhCCC---CcccccccCCCChHHHHHHHHHHHhH
Q 047012 60 TEWTREEDEKLLHLAKLMPT---QWRTIAPIVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~G~---~W~~IA~l~GRT~~QCr~Rw~~lL~~ 105 (400)
-.||.|||..|+..+++.|. .|..||..++||+.|+.+||..++.-
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKL 63 (70)
Confidence 35999999999999999886 89999995599999999999998753
No 81
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.75 E-value=0.00088 Score=55.05 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCcccccc-cCCCChHHHHHHHHH
Q 047012 59 KTEWTREEDEKLLHLAKLMPTQWRTIAP-IVGRTPSQCLERYEK 101 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~~W~~IA~-l~GRT~~QCr~Rw~~ 101 (400)
...||++|.++..+.+..||.+|..|+. +++||..+|..-|+.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 3679999999999999999999999999 788999999998864
No 82
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.72 E-value=0.00097 Score=54.72 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHhCCC---CcccccccC-CCChHHHHHHHHHHHhHhh
Q 047012 60 TEWTREEDEKLLHLAKLMPT---QWRTIAPIV-GRTPSQCLERYEKLLDAAC 107 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~G~---~W~~IA~l~-GRT~~QCr~Rw~~lL~~~i 107 (400)
-.||.|||..||...++.|. .|..||..+ +|+..|+.+||+.++.--.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 45999999999999999885 799999955 6999999999999986543
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.50 E-value=0.0011 Score=52.99 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=39.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC---------CChhHHHHHhc----ccchhhhhhhhhccC
Q 047012 6 KGGVWKNTEDEILKAAVMKYGK---------NQWARISSLLV----RKSAKQCKARWYEWL 53 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~---------~~W~~IA~~L~----~RS~~QCr~RW~~~L 53 (400)
+...||.+|-..|+.+...+.. .-|..||..|. .||+.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999965321 16999999984 699999999998753
No 84
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.48 E-value=0.0025 Score=52.51 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=49.3
Q ss_pred hhhhccCCCCCCcCCCCHHHHHHHHHHHHhCCCCcccccc-cC-----CCChHHHHHHHHHHHhHhhhc
Q 047012 47 ARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAP-IV-----GRTPSQCLERYEKLLDAACAK 109 (400)
Q Consensus 47 ~RW~~~L~p~lkkg~WT~EEDekLl~lv~~~G~~W~~IA~-l~-----GRT~~QCr~Rw~~lL~~~i~k 109 (400)
+-|..+|. ...||.||...|++|++.++-+|..|+. +. +||-.++++||+.+...-+..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555554 3689999999999999999999999998 43 699999999999998776554
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.46 E-value=0.0023 Score=52.55 Aligned_cols=44 Identities=20% Similarity=0.404 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChhHHHHHhcccchhhhhhhhhcc
Q 047012 9 VWKNTEDEILKAAVMKYGK--NQWARISSLLVRKSAKQCKARWYEW 52 (400)
Q Consensus 9 ~WT~EEDe~L~~aV~kyG~--~~W~~IA~~L~~RS~~QCr~RW~~~ 52 (400)
-||.+||..|+...++-|. .-|..||+.|++|++.|+..||+.+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5999999999999999876 3799999999999999999999764
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.36 E-value=0.0024 Score=58.47 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHhC--CCChhHHHHH--hcccchhh
Q 047012 8 GVWKNTEDEILKAAVMKYG--KNQWARISSL--LVRKSAKQ 44 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG--~~~W~~IA~~--L~~RS~~Q 44 (400)
..||..|-..|..++.+|| .+.|..|+.. |.+++...
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~ 48 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETD 48 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHH
Confidence 5699999999999999999 4689999875 55666643
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.25 E-value=0.0033 Score=48.91 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCcccccc--cCCCChHHHHHHHHH
Q 047012 59 KTEWTREEDEKLLHLAKLMPTQWRTIAP--IVGRTPSQCLERYEK 101 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G~~W~~IA~--l~GRT~~QCr~Rw~~ 101 (400)
...||++|-.+..+.+..||.+|..|+. +++||..+|..-|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999998 467999999998874
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.25 E-value=0.0013 Score=52.52 Aligned_cols=48 Identities=23% Similarity=0.625 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHhCC----------CCcccccc-cC----CCChHHHHHHHHHHHhHh
Q 047012 59 KTEWTREEDEKLLHLAKLMP----------TQWRTIAP-IV----GRTPSQCLERYEKLLDAA 106 (400)
Q Consensus 59 kg~WT~EEDekLl~lv~~~G----------~~W~~IA~-l~----GRT~~QCr~Rw~~lL~~~ 106 (400)
...||.+|-..|+++...+. .-|..||. +. .||+.||+.+|.++...-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999986421 15999999 42 599999999999998764
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.07 E-value=0.00098 Score=51.95 Aligned_cols=45 Identities=20% Similarity=0.477 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHhCCC--ChhHHHHHhcccchhhhhhhhhccCC
Q 047012 9 VWKNTEDEILKAAVMKYGKN--QWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 9 ~WT~EEDe~L~~aV~kyG~~--~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
.||.+||..|+..+++-|.. -|..||..| +||+.|+..||...+.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 59999999999999988863 699999999 8999999999988654
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.36 E-value=0.024 Score=57.15 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHHhc-ccchhhhhh-------hhhccCC-------------------------
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKA-------RWYEWLD------------------------- 54 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~-~RS~~QCr~-------RW~~~L~------------------------- 54 (400)
+.||.-+=..++.++.+||.++-..||..|. ++|...++. ||..+-+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999997 888866541 2221100
Q ss_pred -------------------CC-CCcCCCCHHHHHHHHHHHHhCC----CCcccccc-------c------CCCChHHHHH
Q 047012 55 -------------------PS-IKKTEWTREEDEKLLHLAKLMP----TQWRTIAP-------I------VGRTPSQCLE 97 (400)
Q Consensus 55 -------------------p~-lkkg~WT~EEDekLl~lv~~~G----~~W~~IA~-------l------~GRT~~QCr~ 97 (400)
++ .+...||.+||..|+-++..|| ++|..|-. | ..||+..+..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 11 1345799999999999988887 57998832 1 2699999999
Q ss_pred HHHHHHhHh
Q 047012 98 RYEKLLDAA 106 (400)
Q Consensus 98 Rw~~lL~~~ 106 (400)
|-..|+.-.
T Consensus 284 Rc~tLi~~I 292 (374)
T 2y9y_A 284 RGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.01 E-value=0.021 Score=47.06 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=43.6
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCChhHHHHHhc-----ccchhhhhhhhhccC
Q 047012 4 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLV-----RKSAKQCKARWYEWL 53 (400)
Q Consensus 4 ~lKkG~WT~EEDe~L~~aV~kyG~~~W~~IA~~L~-----~RS~~QCr~RW~~~L 53 (400)
+|+...||.+|...|..++.+|.. .|.-|+.... .||..+.++||+.+.
T Consensus 27 ~L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999998 9999999863 799999999998753
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.32 E-value=0.14 Score=46.57 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=37.8
Q ss_pred CcCCCCHHHHHHHHHHHHhCC---CCcccccc---cCCCChHHHHHHHHHHHhH
Q 047012 58 KKTEWTREEDEKLLHLAKLMP---TQWRTIAP---IVGRTPSQCLERYEKLLDA 105 (400)
Q Consensus 58 kkg~WT~EEDekLl~lv~~~G---~~W~~IA~---l~GRT~~QCr~Rw~~lL~~ 105 (400)
....||..|-..|+..+..|| .+|..|+. +.++|...++.-+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 47999975 7799999888655554443
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.79 E-value=0.11 Score=50.88 Aligned_cols=47 Identities=21% Similarity=0.358 Sum_probs=39.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC---CChhHHHH------------Hhcccchhhhhhhhhcc
Q 047012 6 KGGVWKNTEDEILKAAVMKYGK---NQWARISS------------LLVRKSAKQCKARWYEW 52 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~---~~W~~IA~------------~L~~RS~~QCr~RW~~~ 52 (400)
++..||.+||..|+-++.+||. ++|..|.. ++..||+.++..|-..+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 5678999999999999999999 99999974 34568888888876553
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.86 E-value=0.37 Score=46.54 Aligned_cols=28 Identities=39% Similarity=0.789 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHH
Q 047012 8 GVWKNTEDEILKAAVMKYGKNQWARISS 35 (400)
Q Consensus 8 G~WT~EEDe~L~~aV~kyG~~~W~~IA~ 35 (400)
..|+.+||..|+..|.+||.++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999986
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=84.28 E-value=1.3 Score=33.90 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=37.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCC--ChhHHHHHhc--ccchhhhhhhhhcc
Q 047012 6 KGGVWKNTEDEILKAAVMKYGKN--QWARISSLLV--RKSAKQCKARWYEW 52 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~~--~W~~IA~~L~--~RS~~QCr~RW~~~ 52 (400)
.+-.||+|..+.+..||..+|.. -|..|..+|. +-|..+++.+.+.|
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34689999999999999999953 3789999884 67888887665543
No 96
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=83.52 E-value=1.1 Score=45.13 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=35.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC---CChhHHHHHh------------cccchhhhhhhh
Q 047012 6 KGGVWKNTEDEILKAAVMKYGK---NQWARISSLL------------VRKSAKQCKARW 49 (400)
Q Consensus 6 KkG~WT~EEDe~L~~aV~kyG~---~~W~~IA~~L------------~~RS~~QCr~RW 49 (400)
++..||.+||..|+-++.+||. ++|..|-..+ ..||+..+..|-
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc 285 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG 285 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 5678999999999999999999 8999997654 346666655553
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=73.69 E-value=3.9 Score=31.22 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCcCCCCHHHHHHHHHHHHhCCCC---cccccc---cCCCChHHHHHHHHHHHh
Q 047012 57 IKKTEWTREEDEKLLHLAKLMPTQ---WRTIAP---IVGRTPSQCLERYEKLLD 104 (400)
Q Consensus 57 lkkg~WT~EEDekLl~lv~~~G~~---W~~IA~---l~GRT~~QCr~Rw~~lL~ 104 (400)
..+-.||+|...+.+++|...|.. |..|-. ..|.|..+++.+.+.|--
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999854 566766 247999999998887753
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=69.13 E-value=1.7 Score=41.95 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCcccccc
Q 047012 60 TEWTREEDEKLLHLAKLMP-TQWRTIAP 86 (400)
Q Consensus 60 g~WT~EEDekLl~lv~~~G-~~W~~IA~ 86 (400)
..|+.+||..|+-.|-+|| ++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3499999999999999999 89999985
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.96 E-value=8.9 Score=31.87 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhcccchhhhhhhhhccCCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRKSAKQCKARWYEWLDP 55 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~RS~~QCr~RW~~~L~p 55 (400)
.|..+|.+.|. +.|..||..|+--.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 57778888774 3799999999655577888888888764
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=39.49 E-value=17 Score=30.76 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=38.1
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhcc-c----chhhhhhhhhccCCCCCCcCCCCHHHHHHHHHHHH
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVR-K----SAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAK 75 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~-R----S~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~lv~ 75 (400)
.|..+|.++|. +.|..||..|+- . .+...+..|..+|.|- ...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 34555555553 379999999842 1 2346688888888753 2478899888887664
No 101
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.84 E-value=20 Score=29.08 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCC-------CChhHHHHHhcc-----cchhhhhhhhhccCCC
Q 047012 16 EILKAAVMKYGK-------NQWARISSLLVR-----KSAKQCKARWYEWLDP 55 (400)
Q Consensus 16 e~L~~aV~kyG~-------~~W~~IA~~L~~-----RS~~QCr~RW~~~L~p 55 (400)
-.|..+|.+.|. +.|..|+..|+- -.+.+++..|.++|.+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 357777877764 379999999852 1235678888888875
No 102
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=33.98 E-value=35 Score=28.31 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhcccc----hhhhhhhhhccCCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRKS----AKQCKARWYEWLDP 55 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~RS----~~QCr~RW~~~L~p 55 (400)
.|..+|.+.|. +.|..|+..|+--. +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57788888874 37999999985322 34567777777653
No 103
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=32.91 E-value=31 Score=27.31 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=26.0
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhccc----chhhhhhhhhccCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRK----SAKQCKARWYEWLD 54 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~R----S~~QCr~RW~~~L~ 54 (400)
.|..+|.+.|. +.|..|+..|+-- .+.+++..|.++|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 46677777653 3799999998521 24466777777764
No 104
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=31.11 E-value=26 Score=28.22 Aligned_cols=46 Identities=35% Similarity=0.746 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCChhHHHHHhcccchhhhhhhhhccCCCC-------CCcCCCCHHHHHHHHH
Q 047012 15 DEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPS-------IKKTEWTREEDEKLLH 72 (400)
Q Consensus 15 De~L~~aV~kyG~~~W~~IA~~L~~RS~~QCr~RW~~~L~p~-------lkkg~WT~EEDekLl~ 72 (400)
+.+|..+|..|| |...+..+. ..|.. .+|+ +++++|-.+.-+.|.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN----INCFK-----KDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 568999999998 999998764 23332 3454 3578999998776653
No 105
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=30.56 E-value=59 Score=27.35 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHHHHHHhCCC--------CcccccccCC--C----ChHHHHHHHHHHHhHhh
Q 047012 69 KLLHLAKLMPT--------QWRTIAPIVG--R----TPSQCLERYEKLLDAAC 107 (400)
Q Consensus 69 kLl~lv~~~G~--------~W~~IA~l~G--R----T~~QCr~Rw~~lL~~~i 107 (400)
+|..+|...|+ .|..|+..+| . .+...+..|..+|.+-.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 56677777775 7999999332 2 24578999999998764
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=28.77 E-value=42 Score=28.07 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=26.4
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhccc----chhhhhhhhhccCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRK----SAKQCKARWYEWLD 54 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~R----S~~QCr~RW~~~L~ 54 (400)
.|..+|.++|. +.|..|+..|+-- .+.+++..|.++|.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 57778888775 3799999998532 23456777777664
No 107
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=27.47 E-value=46 Score=28.75 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=27.8
Q ss_pred hHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHH
Q 047012 31 ARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLH 72 (400)
Q Consensus 31 ~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~ 72 (400)
..||..+.|+|+.+||..+. + ...||+||++.+..
T Consensus 119 ~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 57888889999999999762 2 34699999988764
No 108
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=26.91 E-value=42 Score=27.06 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=25.9
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhcccc----hhhhhhhhhccCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRKS----AKQCKARWYEWLD 54 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~RS----~~QCr~RW~~~L~ 54 (400)
.|..+|.+.|. +.|..|+..|+--. +.+.+..|.++|.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 57778888774 37999999985322 3456666766654
No 109
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=25.44 E-value=32 Score=29.36 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCC-CCcccccccCCCChHHHHHHHHHHHhHhhhc
Q 047012 65 EEDEKLLHLAKLMP-TQWRTIAPIVGRTPSQCLERYEKLLDAACAK 109 (400)
Q Consensus 65 EEDekLl~lv~~~G-~~W~~IA~l~GRT~~QCr~Rw~~lL~~~i~k 109 (400)
+-|.+|+.+.+..| -.|..||..+|-|...|+.|+..+.+..+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 45778888887776 5899999999999999999999999887655
No 110
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.24 E-value=51 Score=27.51 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=25.7
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhcccc----hhhhhhhhhccCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRKS----AKQCKARWYEWLD 54 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~RS----~~QCr~RW~~~L~ 54 (400)
.|..+|.+.|. +.|..|+..|+--+ +.+.+..|.++|.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 57788888875 37999999985321 2455666666654
No 111
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.03 E-value=27 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHHHHHHhCCC--------CcccccccCC-CChHHHHHHHHHHHhHh
Q 047012 69 KLLHLAKLMPT--------QWRTIAPIVG-RTPSQCLERYEKLLDAA 106 (400)
Q Consensus 69 kLl~lv~~~G~--------~W~~IA~l~G-RT~~QCr~Rw~~lL~~~ 106 (400)
+|..+|...|+ .|..|+..+| -.+..++..|..+|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 57777777664 7999999332 22789999999999764
No 112
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=24.44 E-value=47 Score=28.59 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhccc-----chhhhhhhhhccCCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRK-----SAKQCKARWYEWLDP 55 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~R-----S~~QCr~RW~~~L~p 55 (400)
.|..+|.+.|. +.|..|+..|+-- .+.+++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 57778888775 3799999998521 245677888888865
No 113
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.05 E-value=34 Score=27.62 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCC--------CcccccccCCC--C---hHHHHHHHHHHHhHh
Q 047012 68 EKLLHLAKLMPT--------QWRTIAPIVGR--T---PSQCLERYEKLLDAA 106 (400)
Q Consensus 68 ekLl~lv~~~G~--------~W~~IA~l~GR--T---~~QCr~Rw~~lL~~~ 106 (400)
-+|..+|...|+ .|..|+..+|- + +.+.+..|.++|-+-
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 356667776664 79999994442 2 468899999998764
No 114
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.23 E-value=1.2e+02 Score=23.40 Aligned_cols=46 Identities=17% Similarity=0.031 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCchhHHhcCcCCchHHHHHHHHHHHHh
Q 047012 139 DPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQK 186 (400)
Q Consensus 139 d~~d~teeE~emL~ea~arlgn~w~kiAkrk~R~~~~~k~r~~a~LqK 186 (400)
....+|+.|.++|.-.. -|-+...||..-+-+...++++....++|
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34469999999887654 89999999999999999999988766544
No 115
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=21.20 E-value=40 Score=28.34 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHHHHhCCC--------CcccccccCC-CChHHHHHHHHHHHhHhhh
Q 047012 69 KLLHLAKLMPT--------QWRTIAPIVG-RTPSQCLERYEKLLDAACA 108 (400)
Q Consensus 69 kLl~lv~~~G~--------~W~~IA~l~G-RT~~QCr~Rw~~lL~~~i~ 108 (400)
+|..+|...|+ .|..|+..+| -.+...+..|.++|-+-..
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 56777777764 6999999322 2288999999999987543
No 116
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.09 E-value=96 Score=23.33 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHhcCchhHHhcCcCCchHHHHHHHHHHHHh
Q 047012 142 DMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQK 186 (400)
Q Consensus 142 d~teeE~emL~ea~arlgn~w~kiAkrk~R~~~~~k~r~~a~LqK 186 (400)
.+++.|.++|.- + ..|-+...||..-+-+...++++....++|
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 599999998877 3 678999999999999999999877655544
No 117
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=20.96 E-value=69 Score=27.45 Aligned_cols=35 Identities=17% Similarity=0.449 Sum_probs=27.4
Q ss_pred hHHHHHhcccchhhhhhhhhccCCCCCCcCCCCHHHHHHHHH
Q 047012 31 ARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLH 72 (400)
Q Consensus 31 ~~IA~~L~~RS~~QCr~RW~~~L~p~lkkg~WT~EEDekLl~ 72 (400)
..||..+.|+|+.+||..|. + ...||+||++.+..
T Consensus 120 ~~va~~i~gkt~eeir~~f~------I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIKGKTPEEIRKTFN------I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHSSCCHHHHHHHTT------C-CCCSCTTHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 56888899999999999863 2 34699999887654
No 118
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=20.50 E-value=30 Score=29.14 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=26.0
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhcccchhhhhhhhhccCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRKSAKQCKARWYEWLD 54 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~RS~~QCr~RW~~~L~ 54 (400)
.|..+|.+.|. +.|..|+..|+--.+...+..|.++|.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILL 96 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 46666666653 369999999864446667777776654
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=20.37 E-value=76 Score=26.51 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC-------CChhHHHHHhccc-----chhhhhhhhhccCCC
Q 047012 17 ILKAAVMKYGK-------NQWARISSLLVRK-----SAKQCKARWYEWLDP 55 (400)
Q Consensus 17 ~L~~aV~kyG~-------~~W~~IA~~L~~R-----S~~QCr~RW~~~L~p 55 (400)
.|..+|.++|. +.|..|+..|+-- .+.+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778888775 3799999998521 235667778777754
Done!