BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047013
(781 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/671 (39%), Positives = 376/671 (56%), Gaps = 61/671 (9%)
Query: 115 TTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQ 174
TTRSW+FLG P + +++ ++++G LD+G+WPES SF DEG P P +W+
Sbjct: 1 TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 175 GTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLST 234
GTC+ N CNRK+IG R G S P ++ D NGHGTHT ST
Sbjct: 54 GTCETSNN--FRCNRKIIGARSYHIGRPIS----------PGDVNGPRDTNGHGTHTAST 101
Query: 235 AGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGV 294
A G VS +LYG+G GTA+GG P AR+AAYKVCW + C+ DI+A +D AI DGV
Sbjct: 102 AAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN----DGCSDTDILAAYDDAIADGV 157
Query: 295 DIISASL-GSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGA 353
DIIS S+ G+ P+ +F ++A+GSFHA+ GIL SAGN GP T ++ PW+L+V A
Sbjct: 158 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217
Query: 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGT 413
ST DR+F + V +GN +G SI + +YPL++G + C + +
Sbjct: 218 STMDRKFVTQVQIGNGQSFQGVSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKS 274
Query: 414 IDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNY 473
++P +KGKI++C +A G + ++ GA G+++ ++ D S + LP++ ++
Sbjct: 275 VNPNLLKGKIVVC-EASFGPHEFFKSLD-GAAGVLMTSNTRDYADS----YPLPSSVLDP 328
Query: 474 KDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGV 533
D + YIY+ +P A++ S T N + S FS+RGPN ++KPD+ PGV
Sbjct: 329 NDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVS-FSSRGPNRATKDVIKPDISGPGV 387
Query: 534 DIIAAFTNEYGPSHEEFD--PRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKS 591
+I+AA+ PS R +N++SGTSM+CPH+ GIA VKT +P WSPAAIKS
Sbjct: 388 EILAAW-----PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKS 442
Query: 592 AIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCG 651
A+MTTA+ ++ +P + FAYG+GHVNP A+ PGLVYD DY+ +LCG
Sbjct: 443 ALMTTASPMNARFNPQAE---------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCG 493
Query: 652 LGYNQSIIDLFTQPKEPFKCPGPFSIADFNYPSIAVPNLVNGSMT----VSRRLKNVGTP 707
GYN + T + D NYPS + V+ S T +R L +V
Sbjct: 494 QGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLS--VSPSQTFNQYFNRTLTSVAPQ 551
Query: 708 TCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSD 767
TY+A I+ G++ V P L+F G+ +F T +V+G+ K V LVWSD
Sbjct: 552 ASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSF--TLTVRGSIKGFV---VSASLVWSD 606
Query: 768 GFHNVKSTIAV 778
G H V+S I +
Sbjct: 607 GVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 249/677 (36%), Positives = 361/677 (53%), Gaps = 52/677 (7%)
Query: 115 TTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQ 174
TT + +FL L P W + G+DVI+ LDSG+WPES SF D+GM IP RW+
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 175 GTCQNDTN-KAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLS 233
G C+ T A CNRKLIG Y ++G++ + +N + + ++ D +GHGTH S
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNIT------MNSARDTDGHGTHCAS 109
Query: 234 TAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDG 293
G+F VS +G GTA+G +P+ARLA YK + +D+IA D A+ DG
Sbjct: 110 ITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG----TFTSDLIAAMDQAVADG 165
Query: 294 VDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGA 353
VD+IS S G + +E ++++ SF AMM G+LV ASAGN GP +++N PW+L V +
Sbjct: 166 VDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225
Query: 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDA-TQCKNG 412
TDR F+ +TLGN + I+G S+ + +D P+I + +++ S+E+ +Q +N
Sbjct: 226 GHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRD-SPVIYNKT--LSDCSSEELLSQVEN- 281
Query: 413 TIDPEKVKGKILICYDAKIGDAKGQ-----RAAQAGAVGMILANSREDQNISLNMVHFLP 467
PE I+IC D GD Q RA A+ + ED + + P
Sbjct: 282 ---PENT---IVICDDN--GDFSDQMRIITRARLKAAIFI-----SEDPGVFRSATFPNP 328
Query: 468 TAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPD 527
VN K+G+ V Y+ N+ P A++T T + + + + SARGP+ I KPD
Sbjct: 329 GVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPD 388
Query: 528 VIAPGVDIIAAFT-NEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
++APGV I+AA+ N + S Y + SGTSMA PH AGIA ++K HP+WSP
Sbjct: 389 ILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSP 448
Query: 587 AAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYL 646
+AI+SA+MTTA D+++ PI D + ATP GAGHV+PN ALDPGLVYD P DY+
Sbjct: 449 SAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYV 508
Query: 647 AYLCGLGYNQSIIDLFTQPKEPFKCPGPFSIADFNYPSIAVPNLVNGSMTV-----SRRL 701
LC L + + + C P AD NYPS + G+ T+ R +
Sbjct: 509 NLLCSLNFTEEQFKTIARSSASHNCSNPS--ADLNYPSFIALYSIEGNFTLLEQKFKRTV 566
Query: 702 KNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFG 761
NVG TYKA++ + V P L F E+ ++ +T G++ G
Sbjct: 567 TNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDE---GQSRNVG 623
Query: 762 ELVW--SDGFHNVKSTI 776
+ W +G H+V+S I
Sbjct: 624 SITWVEQNGNHSVRSPI 640
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+RGP + LKP+V+APG IIAA + G S + P Y GT+MA PHV
Sbjct: 312 FSSRGPTADNR--LKPEVVAPGNWIIAARAS--GTSMGQ--PINDYYTAAPGTAMATPHV 365
Query: 571 AGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNS 630
AGIA L+ HP W+P +K+A++ TA D V + AYGAG VN
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETA-----------DIVKPDEIADIAYGAGRVNAYK 414
Query: 631 A 631
A
Sbjct: 415 A 415
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 119/282 (42%), Gaps = 38/282 (13%)
Query: 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
TT D NGHGTH S A G+ ++ Y KG +P A+L KV NG +
Sbjct: 172 TTPYDDNGHGTHVASIAAGTGAASNGKY-------KGMAPGAKLVGIKVL---NGQGSGS 221
Query: 279 AADIIAGFDVAIHD----GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNS 334
+DII G D A+ + G+ +I+ SLGS S++ +A G++VV +AGNS
Sbjct: 222 ISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNS 281
Query: 335 GPAEKTVDN--VPPWVLTVGA---------------STTDREFSSYVTLGNKMVIKGASI 377
GP + TV + V+TVGA + +R V GN ++ AS
Sbjct: 282 GPNKYTVGSPAAASKVITVGAVDKYDVITDFSSRGPTADNRLKPEVVAPGNWIIAARASG 341
Query: 378 AEKGSLTQDFYPLIAGEAAKVANVSNEDATQCK-NGTIDPEKVKGKILICYDAKIGDAKG 436
G D+Y G A +V+ A + + + P+KVK ++ D D
Sbjct: 342 TSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIA 401
Query: 437 QRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQS 478
A AG V A + N T YV+ K QS
Sbjct: 402 DIAYGAGRVNAYKAAYYD------NYAKLTFTGYVSNKGSQS 437
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 118/456 (25%), Positives = 185/456 (40%), Gaps = 106/456 (23%)
Query: 220 TSIDHNGHGTHTLSTAGGSFVSNVSL-YGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
T++D HGTH G+ S Y + +G P+A+L +V + N
Sbjct: 91 TAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRV-------EIVN 137
Query: 279 A-ADIIAGFDVAIHDGVD----IISASLGSKPKEH--FESSVAVGSFHAMMHGILVVASA 331
AD + AI D V+ +I+ S G+ + +A G+ +V SA
Sbjct: 138 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 197
Query: 332 GNS----GPAEKTVDNVPPW-----------VLTVGASTTDREFSSYVTLGNKMVIKGAS 376
GN G + + P + LTV + + D++ + T+
Sbjct: 198 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVK----TDDHQ 253
Query: 377 IAEKGSL-TQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKIL------ICYDA 429
E L T F P A + A ED D + VKGKI I +
Sbjct: 254 AKEMPVLSTNRFEPNKAYDYAYANRGMKED---------DFKDVKGKIALIERGDIDFKD 304
Query: 430 KIGDAKGQRAAQAGAVGMILANSREDQ-NISLNMVHFLPTAYVNYKDG-----QSVYAYI 483
KI +AK +AGAVG+++ ++++ I L V +P A+++ KDG S
Sbjct: 305 KIANAK-----KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTIT 359
Query: 484 YNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEY 543
+N P T S T+ ++ FS+ G L +KPD+ APG DI+++ N
Sbjct: 360 FNA-TPKVLPTASDTKLSR--------FSSWG--LTADGNIKPDIAAPGQDILSSVANN- 407
Query: 544 GPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVK----TLHPDWSPAA----IKSAIMT 595
Y +SGTSM+ P VAGI GL++ T +PD +P+ K +M+
Sbjct: 408 ------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMS 455
Query: 596 TATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+AT + D+ +P GAG V+ A
Sbjct: 456 SATA-------LYDEDEKAYFSPRQQGAGAVDAKKA 484
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+ GP L DV+APGV I + P + Y +SGTSMA PHV
Sbjct: 180 FSSVGPEL--------DVMAPGVSICSTL-----PGGK--------YGALSGTSMASPHV 218
Query: 571 AGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
AG A L+ + HP+W+ ++S++ TAT
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTAT 246
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 23/92 (25%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
VP D+N HGTH GT +P A L A KV
Sbjct: 50 FVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVL---- 87
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLGS 303
GA+ A II G + AI + +D+I+ SLGS
Sbjct: 88 GADGSGQASWIINGIEWAIANNMDVINMSLGS 119
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 111/452 (24%), Positives = 176/452 (38%), Gaps = 98/452 (21%)
Query: 220 TSIDHNGHGTHTLSTAGGSFVSNVSL-YGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
T++D HGTH G+ S Y + +G P+A+L +V + N
Sbjct: 82 TAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAXPEAQLLLXRV-------EIVN 128
Query: 279 A-ADIIAGFDVAIHD----GVDIISASLGSKPKEH--FESSVAVGSFHAMMHGILVVASA 331
AD + AI D G +I+ S G+ + +A G+ +V SA
Sbjct: 129 GLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 188
Query: 332 GNS----GPAEKTVDNVPPW-----------VLTVGASTTDREFSSYVTLGNKMVIKGAS 376
GN G + + P + LTV + + D++ + V +K A
Sbjct: 189 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVR------VKTAD 242
Query: 377 IAEKGS---LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGD 433
+K T F P A + A + ED D + VKGKI + I
Sbjct: 243 QQDKEXPVLSTNRFEPNKAYDYAYANRGTKED---------DFKDVKGKIALIERGDIDF 293
Query: 434 AKGQRAAQAGAVGMILANSREDQN--ISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVA 491
A+ +L +D+ I L V P A+++ KDG + +NP
Sbjct: 294 KDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDG------LLLKDNPQK 347
Query: 492 SMTNSITEFNKIWSRMT----SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSH 547
++T + T K+ + S FS+ G L +KPD+ APG DI+++ N
Sbjct: 348 TITFNATP--KVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVANN----- 398
Query: 548 EEFDPRRVPYNVMSGTSMACPHVAGIAGLVK----TLHPDWSPAA----IKSAIMTTATT 599
Y +SGTS + P VAGI GL++ T +PD +P+ K + ++AT
Sbjct: 399 --------KYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATA 450
Query: 600 EDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+ D+ +P GAG V+ A
Sbjct: 451 -------LYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT-NEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I++ N+YG SGT
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSIVSTLPGNKYG--------------AKSGT 211
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
+MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 212 AMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT-NEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I++ N+YG SGT
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSIVSTLPGNKYG--------------AKSGT 211
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
+MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 212 AMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT-NEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSICSTLPGNKYG--------------AKSGT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 38/128 (29%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSICSTLPGNKYG--------------AKSGT 211
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623
SMA PHVAG A L+ + HP+W+ ++S++ T T +S F YG
Sbjct: 212 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS---------------FYYGK 256
Query: 624 GHVNPNSA 631
G +N +A
Sbjct: 257 GLINVQAA 264
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIXSTLPGNKYG--------------AYSGT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIXSTLPGNKYG--------------AYSGT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSICSTLPGNKYG--------------AKSGT 211
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 212 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG YN GT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGA-----------YN---GT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTT 255
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+VP D+N HGTH T + +++ + G+ +P A L A KV
Sbjct: 50 MVPSETNPFQDNNSHGTHVAGTV-AALNNSIGVLGV--------APSASLYAVKVL---- 96
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLG 302
GA+ II G + AI + +D+I+ SLG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG YN GT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGA-----------YN---GT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTT 255
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT-NEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSICSTLPGNKYG--------------AKSGT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+ GP L DV+APGV I + P + Y +SGT+MA PHV
Sbjct: 180 FSSVGPEL--------DVMAPGVSICSTL-----PGGK--------YGALSGTAMASPHV 218
Query: 571 AGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
AG A L+ + HP+W+ ++S++ TAT
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTAT 246
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 23/92 (25%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
VP D+N HGTH GT +P A L A KV
Sbjct: 50 FVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVL---- 87
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLGS 303
GA+ A II G + AI + +D+I+ SLGS
Sbjct: 88 GADGSGQASWIINGIEWAIANNMDVINMSLGS 119
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYG--------------AKSGT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG YN GT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGA-----------YN---GT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+VP D+N HGTH T + +++ + G+ +P A L A KV
Sbjct: 50 MVPSETNPFQDNNSHGTHVAGTV-AALNNSIGVLGV--------APSASLYAVKVL---- 96
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLG 302
GA+ II G + AI + +D+I+ SLG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG YN GT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGA-----------YN---GT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+VP D+N HGTH T + +++ + G+ +P A L A KV
Sbjct: 50 MVPSETNPFQDNNSHGTHVAGTV-AALNNSIGVLGV--------APSASLYAVKVL---- 96
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLG 302
GA+ II G + AI + +D+I+ SLG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG YN GT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGA-----------YN---GT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
SMA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+VP D+N HGTH T + +++ + G+ +P A L A KV
Sbjct: 50 MVPSETNPFQDNNSHGTHVAGTV-AALNNSIGVLGV--------APSASLYAVKVL---- 96
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLG 302
GA+ II G + AI + +D+I+ SLG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 174 SNQRASFSSVGPEL--------DVMAPGVSICSTLPGNKYG--------------AKSGT 211
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 212 XMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYG--------------AKSGT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 XMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYG--------------AYSGT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 XMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+VP D+N HGTH T + +++ + G+ +P A L A KV
Sbjct: 50 MVPSETNPFQDNNSHGTHVAGTV-AALNNSIGVLGV--------APSASLYAVKVL---- 96
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLG 302
GA+ II G + AI + +D+I+ SLG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT-NEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 171 SNQRASFSSVGPEL--------DVMAPGVSIWSTLPGNKYG--------------AKSGT 208
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 209 XMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 243
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT-NEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG SGT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYG--------------AYSGT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 XMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 13/72 (18%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GTSMA PHVAG+A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTAT 598
I++ + TAT
Sbjct: 238 VQIRNHLKNTAT 249
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV + + + I
Sbjct: 58 DGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKVLGA---SGSGSVSSI 105
Query: 283 IAGFDVAIHDGVDIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
G + A ++G+ + + SLGS P E +V A G+LVVA++GNSG +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 342 DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG YN GT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGA-----------YN---GT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 XMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+VP D+N HGTH T + +++ + G+ +P A L A KV
Sbjct: 50 MVPSETNPFQDNNSHGTHVAGTV-AALNNSIGVLGV--------APSASLYAVKVL---- 96
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLG 302
GA+ II G + AI + +D+I+ SLG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG YN GT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGA-----------YN---GT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
MA PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 XMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+VP D+N HGTH T + +++ + G+ +P A L A KV
Sbjct: 50 MVPSETNPFQDNNSHGTHVAGTV-AALNNSIGVLGV--------APSASLYAVKVL---- 96
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLG 302
GA+ II G + AI + +D+I+ SLG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GTSMA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV GA+ A
Sbjct: 58 DGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKVL----GADGRGAISS 104
Query: 283 IA-GFDVAIHDGVDIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT 340
IA G + A ++G+ + + SLGS P E +V A G+LVVA++GNSG + +
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGASSIS 160
Query: 341 VDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 161 YPARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GTSMA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV + + + I
Sbjct: 58 DGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKVLGA---SGSGSYSSI 105
Query: 283 IAGFDVAIHDGVDIISASLGSKPK-EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
G + A ++G+ + S SLGS E +V A G+LVVA++GNSG +
Sbjct: 106 AQGLEWAGNNGMHVASLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 342 DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GTSMA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV + + + I
Sbjct: 58 DGNGHGTHVAGTIA-ALNNSIGVLGV--------APNAELYAVKVLGA---SGSGSVSSI 105
Query: 283 IAGFDVAIHDGVDIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
G + A ++G+ + + SLGS P E +V A G+LVVA++GNSG +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 342 DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GTSMA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV + + + I
Sbjct: 58 DGNGHGTHVAGTIA-ALNNSIGVLGV--------APNAELYAVKVLGA---SGGGSNSSI 105
Query: 283 IAGFDVAIHDGVDIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
G + A ++G+ + + SLGS P E +V A G+LVVA++GNSG +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 342 DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GTSMA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV + + + I
Sbjct: 58 DGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKVLGA---SGSGSVSSI 105
Query: 283 IAGFDVAIHDGVDIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
G + A ++G+ + + SLGS P E +V A G+LVVA++GNSG +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 342 DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 23/95 (24%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGT 563
S + FS+ GP L DV+APGV I + N+YG YN GT
Sbjct: 183 SNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGA-----------YN---GT 220
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
S A PHVAG A L+ + HP+W+ ++S++ T T
Sbjct: 221 SXASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+VP D+N HGTH T + +++ + G+ +P A L A KV
Sbjct: 50 MVPSETNPFQDNNSHGTHVAGTV-AALNNSIGVLGV--------APSASLYAVKVL---- 96
Query: 273 GANLCNAAD-IIAGFDVAIHDGVDIISASLG 302
GA+ II G + AI + D+I+ SLG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNXDVINXSLG 127
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 202 IESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTA---GGSFVSNVSLYGMGYGTAKGGSP 258
+E C+ + N T D NGHGTH TA GGS +YG+ +P
Sbjct: 48 VEQCKDFTGATTPINNSCT--DRNGHGTHVAGTALADGGS--DQAGIYGV--------AP 95
Query: 259 KARLAAYKVCWKP-NGANLCNAADIIAGFDVAIHDGVD-IISASLGSKPKEHFESSVAVG 316
A L AYKV +G + AA I D A G IIS SLGS SS
Sbjct: 96 DADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAV-- 153
Query: 317 SFHAMMHGILVVASAGNSGPAEKTV 341
+A G+L+VA+AGNSG ++ T+
Sbjct: 154 -NYAYSKGVLIVAAAGNSGYSQGTI 177
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTED 601
YN +SGT MA PHV+G+A + +P S ++S + A + D
Sbjct: 243 YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 202 IESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTA---GGSFVSNVSLYGMGYGTAKGGSP 258
+E C+ + N T D NGHGTH TA GGS +YG+ +P
Sbjct: 48 VEQCKDFTGATTPINNSCT--DRNGHGTHVAGTALADGGS--DQAGIYGV--------AP 95
Query: 259 KARLAAYKVCWKP-NGANLCNAADIIAGFDVAIHDGVD-IISASLGSKPKEHFESSVAVG 316
A L AYKV +G + AA I D A G IIS SLGS SS
Sbjct: 96 DADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAV-- 153
Query: 317 SFHAMMHGILVVASAGNSGPAEKTV 341
+A G+L+VA+AGNSG ++ T+
Sbjct: 154 -NYAYSKGVLIVAAAGNSGYSQGTI 177
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTED 601
YN +SGTSMA PHV+G+A + +P S ++S + A + D
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GT MA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV + + + I
Sbjct: 58 DGNGHGTHVAGTIA-ALNNSIGVLGV--------APNAELYAVKVLGA---SGSGSVSSI 105
Query: 283 IAGFDVAIHDGVDIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
G + A ++G+ + + SLGS P E +V A G+LVVA++GNSG +
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 342 DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GT MA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV + + + I
Sbjct: 58 DGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKVLGA---SGSGSYSSI 105
Query: 283 IAGFDVAIHDGVDIISASLGSKPK-EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
G + A ++G+ + S SLGS E +V A G+LVVA++GNSG +
Sbjct: 106 AQGLEWAGNNGMHVASLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISY 161
Query: 342 DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GT MA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 24/169 (14%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV GA+ A
Sbjct: 58 DGNGHGTHVAGTIA-ALDNSIGVLGV--------APSAELYAVKVL----GASGSGAISS 104
Query: 283 IA-GFDVAIHDGVDIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT 340
IA G + A ++G+ + + SLGS P E +V A G+LVVA++GNSG +
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSIS 160
Query: 341 VDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 161 YPARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV++ + + Y ++GT MA PHVAG A LVK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 587 AAIKSAIMTTATTEDSSK 604
I++ + TAT+ S+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T + +++ + G+ +P A L A KV GA+ A
Sbjct: 58 DGNGHGTHVAGTI-AALDNSIGVLGV--------APSAELYAVKVL----GASGSGAISS 104
Query: 283 IA-GFDVAIHDGVDIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT 340
IA G + A ++G+ + + SLGS P E +V A G+LVVA++GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNEGAGSID 160
Query: 341 VDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
+ VGA+ + +S+ G G I G Q YP
Sbjct: 161 YPARYANAMAVGATDQNNNRASFSQYG-----AGLDIVAPGVNVQSTYP 204
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 36/121 (29%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+ G L DV+APGV I + Y +GTSMA PHV
Sbjct: 189 FSSAGSEL--------DVMAPGVSIQSTLPGG-------------TYGAYNGTSMATPHV 227
Query: 571 AGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNS 630
AG A L+ + HP W+ A ++ + +TAT SS F YG G +N +
Sbjct: 228 AGAAALILSKHPTWTNAQVRDRLESTATYLGSS---------------FYYGKGLINVQA 272
Query: 631 A 631
A
Sbjct: 273 A 273
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 29/200 (14%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
VP D + HGTH T + +++ + G+ +P A L A KV +
Sbjct: 50 FVPSETNPYQDGSSHGTHVAGTIA-ALNNSIGVLGV--------APSASLYAVKVL---D 97
Query: 273 GANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAG 332
+ II G + AI + +D+I+ SLG +V A+ GI+V A+AG
Sbjct: 98 STGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVV---DKAVSSGIVVAAAAG 154
Query: 333 NSGPAEKTVD-NVP---PWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFY 388
N G + T P P + VGA + + +S+ + G+++ + ++ + +L Y
Sbjct: 155 NEGSSGSTSTVGYPAKYPSTIAVGAVNSANQRASFSSAGSELDVMAPGVSIQSTLPGGTY 214
Query: 389 ----------PLIAGEAAKV 398
P +AG AA +
Sbjct: 215 GAYNGTSMATPHVAGAAALI 234
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 21/165 (12%)
Query: 210 SSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCW 269
+SF+ E+ T D NGHGTH T + + + G+ +P L A KV
Sbjct: 48 ASFVSGESYNT--DGNGHGTHVAGTVA-ALDNTTGVLGV--------APNVSLYAIKVL- 95
Query: 270 KPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVA 329
N + + + I++G + A +G+D+I+ SLG P AV +A GI+VVA
Sbjct: 96 --NSSGSGSYSAIVSGIEWATQNGLDVINMSLGG-PSGSTALKQAVDKAYA--SGIVVVA 150
Query: 330 SAGNSG--PAEKTVDNVPPW--VLTVGASTTDREFSSYVTLGNKM 370
+AGNSG ++ T+ + V+ VGA +++ +S+ ++G+++
Sbjct: 151 AAGNSGNSGSQNTIGYPAKYDSVIAVGAVDSNKNRASFSSVGSEL 195
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 13/72 (18%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
+V+APGV + + + PS+ Y ++GTSMA PHVAG A L+ + +P S
Sbjct: 196 EVMAPGVSVYSTY-----PSNT--------YTSLNGTSMASPHVAGAAALILSKYPTLSA 242
Query: 587 AAIKSAIMTTAT 598
+ +++ + +TAT
Sbjct: 243 SQVRNRLSSTAT 254
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
DV+APGV I + Y +GT MA PHVAG A L+ + HP W+
Sbjct: 197 DVMAPGVSIQSTLPGG-------------TYGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 587 AAIKSAIMTTAT 598
A ++ + +TAT
Sbjct: 244 AQVRDRLESTAT 255
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 29/200 (14%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
VP D + HGTH T + +++ + G+ +P A L A KV +
Sbjct: 50 FVPSETNPYQDGSSHGTHVAGTIA-ALNNSIGVLGV--------APSASLYAVKVL---D 97
Query: 273 GANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAG 332
+ II G + AI + +D+I+ SLG +V A+ GI+V A+AG
Sbjct: 98 STGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVV---DKAVSSGIVVAAAAG 154
Query: 333 NSGPAEKTVD-NVP---PWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFY 388
N G + T P P + VGA + + +S+ ++G+++ + ++ + +L Y
Sbjct: 155 NEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSVGSELDVMAPGVSIQSTLPGGTY 214
Query: 389 ----------PLIAGEAAKV 398
P +AG AA +
Sbjct: 215 GAYNGTXMATPHVAGAAALI 234
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTS 564
S + FS+ G L DV+APGV I + Y +GT
Sbjct: 183 SNQRASFSSAGSEL--------DVMAPGVSIQSTLPGG-------------TYGAYNGTC 221
Query: 565 MACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
MA PHVAG A L+ + HP W+ A ++ + +TAT
Sbjct: 222 MATPHVAGAAALILSKHPTWTNAQVRDRLESTAT 255
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 29/200 (14%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
VP D + HGTH T + +++ + G+ SP A L A KV +
Sbjct: 50 FVPSETNPYQDGSSHGTHVAGTIA-ALNNSIGVLGV--------SPSASLYAVKVL---D 97
Query: 273 GANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAG 332
+ II G + AI + +D+I+ SLG +V A+ GI+V A+AG
Sbjct: 98 STGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVV---DKAVSSGIVVAAAAG 154
Query: 333 NSGPAEKTVD-NVP---PWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFY 388
N G + T P P + VGA + + +S+ + G+++ + ++ + +L Y
Sbjct: 155 NEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSAGSELDVMAPGVSIQSTLPGGTY 214
Query: 389 ----------PLIAGEAAKV 398
P +AG AA +
Sbjct: 215 GAYNGTCMATPHVAGAAALI 234
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 17/199 (8%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 140 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 199
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG A D ++IS SLG + + + + +++A
Sbjct: 200 IEQAILGPDGVADKDGDGIIAGDPDA--DAAEVISMSLGGPADDSYLYDMIIQAYNA--- 254
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I +
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS--TY 312
Query: 384 TQDFYPLIAGEAAKVANVS 402
D Y + G A +VS
Sbjct: 313 PDDSYETLMGTAMATPHVS 331
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 298 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 30/106 (28%)
Query: 527 DVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585
+V+APG + + + TN Y ++GTSMA PHVAG A L+ + HP+ S
Sbjct: 197 EVMAPGAGVYSTYPTNTYA--------------TLNGTSMASPHVAGAAALILSKHPNLS 242
Query: 586 PAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+ +++ + +TAT SS F YG G +N +A
Sbjct: 243 ASQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 273
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 30/106 (28%)
Query: 527 DVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585
+V+APG + + + TN Y ++GTSMA PHVAG A L+ + HP+ S
Sbjct: 197 EVMAPGAGVYSTYPTNTYA--------------TLNGTSMASPHVAGAAALILSKHPNLS 242
Query: 586 PAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+ +++ + +TAT SS F YG G +N +A
Sbjct: 243 ASQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 273
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 30/106 (28%)
Query: 527 DVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585
+V+APG + + + TN Y ++GTSMA PHVAG A L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTYPTNTYA--------------TLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 586 PAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+ +++ + +TAT SS F YG G +N +A
Sbjct: 242 ASQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 30/106 (28%)
Query: 527 DVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585
+V+APG + + + TN Y ++GTSMA PHVAG A L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTYPTNTYA--------------TLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 586 PAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+ +++ + +TAT SS F YG G +N +A
Sbjct: 242 ASQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 30/106 (28%)
Query: 527 DVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585
+V+APG + + + TN Y ++GTSMA PHVAG A L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTYPTNTYA--------------TLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 586 PAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+ +++ + +TAT SS F YG G +N +A
Sbjct: 242 ASQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 30/106 (28%)
Query: 527 DVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585
+V+APG + + + TN Y ++GTSMA PHVAG A L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTYPTNTYA--------------TLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 586 PAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+ +++ + +TAT SS F YG G +N +A
Sbjct: 242 ASQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 534 DIIAAFTNEYGPSHEEFDP-RRVP---------YNVMSGTSMACPHVAGIAGLVKTLHPD 583
D A+F+N YG + F P +P ++GTSMA PHVAG+A L +P
Sbjct: 183 DARASFSN-YGSCVDLFAPGASIPSAWYTSDTATQTLNGTSMATPHVAGVAALYLEQNPS 241
Query: 584 WSPAAIKSAIMTTATT 599
+PA++ SAI+ ATT
Sbjct: 242 ATPASVASAILNGATT 257
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 140 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 199
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 200 IEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 254
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I +
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS--TY 312
Query: 384 TQDFYPLIAGEAAKVANVS 402
D Y + G A +VS
Sbjct: 313 PDDSYETLMGTAMATPHVS 331
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 298 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 60 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 174
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I +
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS--TY 232
Query: 384 TQDFYPLIAGEAAKVANVS 402
D Y + G A +VS
Sbjct: 233 PDDSYETLMGTAMATPHVS 251
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 218 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 261
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 140 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 199
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 200 IEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 254
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I +
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS--TY 312
Query: 384 TQDFYPLIAGEAAKVANVS 402
D Y + G A +VS
Sbjct: 313 PDDSYETLMGTAMATPHVS 331
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 298 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 137 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 196
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 197 IEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 251
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I +
Sbjct: 252 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS--TY 309
Query: 384 TQDFYPLIAGEAAKVANVS 402
D Y + G A +VS
Sbjct: 310 PDDSYETLMGTAMATPHVS 328
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 295 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 338
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 62 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 121
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 122 IEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 176
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I +
Sbjct: 177 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS--TY 234
Query: 384 TQDFYPLIAGEAAKVANVS 402
D Y + G A +VS
Sbjct: 235 PDDSYETLMGTAMATPHVS 253
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 220 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 263
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 27/96 (28%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
DV+APGVDI++ T Y MSGTSMA PHVAG+A L+ + +
Sbjct: 202 DVVAPGVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQGRN--N 246
Query: 587 AAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYG 622
I+ AI TA D+++G T F YG
Sbjct: 247 IEIRQAIEQTA-----------DKISG-TGTYFKYG 270
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 19/194 (9%)
Query: 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAAD 281
+D N HGTH A + + GM +P R+ A + + L + AD
Sbjct: 67 MDLNNHGTHVAGIAAAETNNATGIAGM--------APNTRILAVRALDRNGSGTLSDIAD 118
Query: 282 IIAGFDVAIHDGVDIISASLGSK-PKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT 340
I A G ++I+ SLG E++V +A G +VVA+AGN+G +
Sbjct: 119 AII---YAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSSTTF 171
Query: 341 VDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAK--- 397
V+ VGA +S+ G + + + ++T + Y ++G +
Sbjct: 172 EPASYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNRYAYMSGTSMASPH 231
Query: 398 VANVSNEDATQCKN 411
VA ++ A+Q +N
Sbjct: 232 VAGLAALLASQGRN 245
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 71 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 130
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 131 IEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 185
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I +
Sbjct: 186 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS--TY 243
Query: 384 TQDFYPLIAGEAAKVANVS 402
D Y + G A +VS
Sbjct: 244 PDDSYETLMGTAMATPHVS 262
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 229 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 516 PNLIDPAIL--KPDVIAPGVDIIAA----FTNEYGPSHEEFDPRRVPYNVMSGTSMACPH 569
P L +P ++ D+ P V + A + G S + Y +GTSMA PH
Sbjct: 315 PGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPH 374
Query: 570 VAGIAGLVKTLHPDWSPAAIKSAIMTTA 597
V+G+A LV + HP+ S + +++A+ TA
Sbjct: 375 VSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 71 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 130
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 131 IAQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 185
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I +
Sbjct: 186 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS--TY 243
Query: 384 TQDFYPLIAGEAAKVANVS 402
D Y + G A +VS
Sbjct: 244 PDDSYETLMGTAMATPHVS 262
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 229 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 60 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 174
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSY 363
GI++VA++GN G + P V+ VGA ++ +S+
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 214
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT MA PHV+G+ L++ +
Sbjct: 218 QPEVSAPGVDILSTYPDD-------------SYETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 60 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 265 -YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
+ P+G + IIAG D ++IS SLG + + + + +++A
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA--- 174
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSY 363
GI++VA++GN G + P V+ VGA ++ +S+
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 214
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT MA PHV+G+ L++ +
Sbjct: 218 QPEVSAPGVDILSTYPDD-------------SYETLMGTCMATPHVSGVVALIQAAY 261
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ APG I +++ + N +SGTSMA PHVAG+A L +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 587 AAIKSAIMTTATTE 600
A + + + T AT +
Sbjct: 247 AQVTNLLKTRATAD 260
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 30/106 (28%)
Query: 527 DVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585
+V+APG + + + TN Y ++GT MA PHVAG A L+ + HP+ S
Sbjct: 196 EVMAPGAGVYSTYPTNTYA--------------TLNGTXMASPHVAGAAALILSKHPNLS 241
Query: 586 PAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
+ +++ + +TAT SS F YG G +N +A
Sbjct: 242 ASQVRNRLSSTATYLGSS---------------FYYGKGLINVEAA 272
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLV----KTLHP 582
D+ APG DI++ T + G P Y+ M+GTSMA PHV+G+A LV +++
Sbjct: 245 DLAAPGQDILS--TVDSGTRR----PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNK 298
Query: 583 DWSPAAIKSAIMTTAT 598
+ +PA +K +++T +
Sbjct: 299 NLTPAELKDVLVSTTS 314
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLV----KTLHP 582
D+ APG DI++ T + G P Y+ M+GTSMA PHV+G+A LV +++
Sbjct: 245 DLAAPGQDILS--TVDSGTRR----PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNK 298
Query: 583 DWSPAAIKSAIMTTAT 598
+ +PA +K +++T +
Sbjct: 299 NLTPAELKDVLVSTTS 314
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLV----KTLHP 582
D+ APG DI++ T + G P Y+ M+GTSMA PHV+G+A LV +++
Sbjct: 245 DLAAPGQDILS--TVDSGTRR----PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNK 298
Query: 583 DWSPAAIKSAIMTTAT 598
+ +PA +K +++T +
Sbjct: 299 NLTPAELKDVLVSTTS 314
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 21/201 (10%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGG--------SFVSNVSLYGMGYGTAKGGSPKARLAA- 264
V L D NGHGTH + T V +Y + A+G + +A
Sbjct: 140 VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 199
Query: 265 -YKVCWKPNGANLCNAADIIAGF--DVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAM 321
+ P+G + IIAG D A ++IS SLG + + + + +++A
Sbjct: 200 IEQAILGPDGVADKDGDGIIAGDPDDAA----AEVISMSLGGPADDSYLYDMIIQAYNA- 254
Query: 322 MHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKG 381
GI++VA++GN G + P V+ VGA ++ +S+ ++ G I
Sbjct: 255 --GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS-- 310
Query: 382 SLTQDFYPLIAGEAAKVANVS 402
+ D Y + G A +VS
Sbjct: 311 TYPDDSYETLMGTAMATPHVS 331
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581
+P+V APGVDI++ + ++ Y + GT+MA PHV+G+ L++ +
Sbjct: 298 QPEVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+RGP +KPDV+APG I++A + P + Y M GTSMA P V
Sbjct: 205 FSSRGP--TKDGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYMGGTSMATPIV 261
Query: 571 AG-IAGL----VKTLHPDWSPAAIKSAIMTTA 597
AG +A L VK P+ +K+A++ A
Sbjct: 262 AGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
DV APG I + + Y +SGTSMA PHVAG+AGL+ + S
Sbjct: 201 DVAAPGSSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 587 AAIKSAIMTTA 597
+ I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 69/171 (40%), Gaps = 31/171 (18%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+V +S D NGHGTH T G YG AK K +L KV N
Sbjct: 55 MVKTYYYSSRDGNGHGTHCAGTVGSRT----------YGVAK----KTQLFGVKV-LDDN 99
Query: 273 GANLCNAADIIAGFDVAIHD--------GVDIISASLGSKPKEHFESSVAVGSFHAMMHG 324
G+ + IIAG D D GV + S SLG + SSV + G
Sbjct: 100 GSG--QYSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGG----YSSSVNSAAARLQSSG 152
Query: 325 ILVVASAGNSGPAEKTVDNVP-PWVLTVGASTTDREFSSYVTLGNKMVIKG 374
++V +AGN+ + P V TVGAS SS+ G+ + I G
Sbjct: 153 VMVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFG 203
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ PG DI++ + G S +SGTSMA PHVAG+A + TL +
Sbjct: 200 DIFGPGTDILSTWI---GGSTRS----------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 587 AAIKSAIMTTATTEDSSKHPI 607
+A + I TA D S P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 69/171 (40%), Gaps = 31/171 (18%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+V +S D NGHGTH T G YG AK K +L KV N
Sbjct: 55 MVKTYYYSSRDGNGHGTHCAGTVGSRT----------YGVAK----KTQLFGVKV-LDDN 99
Query: 273 GANLCNAADIIAGFDVAIHD--------GVDIISASLGSKPKEHFESSVAVGSFHAMMHG 324
G+ + IIAG D D GV + S SLG + SSV + G
Sbjct: 100 GSG--QYSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGG----YSSSVNSAAARLQSSG 152
Query: 325 ILVVASAGNSGPAEKTVDNVP-PWVLTVGASTTDREFSSYVTLGNKMVIKG 374
++V +AGN+ + P V TVGAS SS+ G+ + I G
Sbjct: 153 VMVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFG 203
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ PG I++ + G S +SGTSMA PHVAG+A + TL +
Sbjct: 200 DIFGPGTSILSTWI---GGSTRS----------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 587 AAIKSAIMTTATTEDSSKHPI 607
+A + I TA D S P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTA 597
Y +SGTSMA PHVAG+AGL+ + S + I++AI TA
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTA 256
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 528 VIAPGVDIIAAFTNEYGPSHEEFDPRRVP------YNVMSGTSMACPHVAGIAGLVKTLH 581
V APGV I++ E +E + VP Y+ GTSMA PHV G+ ++
Sbjct: 340 VGAPGVTILSTVPGEDSIGYEGHN-ENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKF 398
Query: 582 PDWSPAAIKSAIMTTA 597
P+ P I+ + TA
Sbjct: 399 PNAKPWQIRKLLENTA 414
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 558 NVMSGTSMACPHVAGIAGL----VKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTG 613
+ +GTS A PHVAG L +K + ++SP +IK AI TAT K +D
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT-----KLGYVD---- 506
Query: 614 QKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYN 655
PFA G G +N A + + + L + +G N
Sbjct: 507 ----PFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNN 544
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 26/157 (16%)
Query: 227 HGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGF 286
HGTH S A G+ S G +P A++ + + G+ A + A
Sbjct: 272 HGTHVSSIASGNHSSR---------DVDGVAPNAKIVSXTIGDGRLGSXETGTALVRAXT 322
Query: 287 DVA--IHDG--VDIISASLGSKPKEH--FESSVAVGSFHAMM---HGILVVASAGNSGPA 337
V DG +D+I+ S G EH + +S +G + +G++ VASAGN GPA
Sbjct: 323 KVXELCRDGRRIDVINXSYG----EHANWSNSGRIGELXNEVVNKYGVVWVASAGNHGPA 378
Query: 338 EKTVDNVP----PWVLTVGASTTDREFSSYVTLGNKM 370
TV P P ++ VGA + + + + K+
Sbjct: 379 LCTVGTPPDISQPSLIGVGAYVSPQXXEAEYAMREKL 415
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 521 PAILKPDVIAPGVDIIAAFTNEYGPS------HEEFDPRRVPYN-VMSGTSMACPHVAGI 573
PA++ D+ PG D+ T++ PS + + D YN VM+GTS A P +G
Sbjct: 291 PAMVTTDL--PGCDMGYNRTDD--PSTNRLHGNSQLDAS-CDYNGVMNGTSSATPSTSGA 345
Query: 574 AGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPIL 608
L+ + +PD S ++ + +AT D+ P++
Sbjct: 346 MALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
>pdb|3ST1|A Chain A, Crystal Structure Of Necrosis And Ethylene Inducing
Protein 2 From The Causal Agent Of Cocoa's Witches Broom
Disease
Length = 214
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 58 FLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAK-QIARHPEVVSVFLE---EGIDL 113
FL S ++ A + +Y N GA +++ H K Q + P + S L+ +G DL
Sbjct: 110 FLNSDTQQIDGVAASAHGKWRKYPNPGGANIDDTHVKLQYSAEPVINSHALDLTDKGGDL 169
Query: 114 HTTRSWEFLGLEKDNQIPPDSAWNKARFG-EDVIIGNLDSGVW 155
T SWE +G + I S W A D +IG+ SG W
Sbjct: 170 PTLASWEGMGADARAAINERSHWGDANPPIADSLIGSSLSGAW 212
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 14/63 (22%)
Query: 528 VIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLV--------KT 579
+ APG +I++ T + G + P R Y + +GTSMA PHV+G+A LV KT
Sbjct: 247 LAAPGTNILS--TIDVG----QAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 580 LHP 582
L P
Sbjct: 301 LTP 303
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 14/63 (22%)
Query: 528 VIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLV--------KT 579
+ APG +I++ T + G + P R Y + +GTSMA PHV+G+A LV KT
Sbjct: 247 LAAPGTNILS--TIDVG----QAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 580 LHP 582
L P
Sbjct: 301 LTP 303
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+RGP +KPDV+APG I++A + P + Y GTS A P V
Sbjct: 205 FSSRGP--TKDGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYXGGTSXATPIV 261
Query: 571 AG-IAGL----VKTLHPDWSPAAIKSAIMTTA 597
AG +A L VK P+ +K+A++ A
Sbjct: 262 AGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 68/171 (39%), Gaps = 31/171 (18%)
Query: 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN 272
+V +S D NGHGTH T G YG K K +L KV N
Sbjct: 55 MVKTYYYSSRDGNGHGTHCAGTVGSRT----------YGVVK----KTQLFGVKV-LDDN 99
Query: 273 GANLCNAADIIAGFDVAIHD--------GVDIISASLGSKPKEHFESSVAVGSFHAMMHG 324
G+ + IIAG D D GV + S SLG + SSV + G
Sbjct: 100 GSG--QYSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGG----YSSSVNSAAARLQSSG 152
Query: 325 ILVVASAGNSGPAEKTVDNVP-PWVLTVGASTTDREFSSYVTLGNKMVIKG 374
++V +AGN+ + P V TVGAS SS+ G+ + I G
Sbjct: 153 VMVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFG 203
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ PG I++ + G S +SGTSMA PHVAG+A + TL +
Sbjct: 200 DIFGPGTSILSTWI---GGSTRS----------ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 587 AAIKSAIMTTATTEDSSKHPI 607
+A + I TA D S P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 511 FSARGPNLI--DPAILKPDV--IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMA 566
FS+RG D I K DV APG + + + FD Y +SGTSMA
Sbjct: 205 FSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW----------FDG---GYATISGTSMA 251
Query: 567 CPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTED 601
PH AG+A + P S ++ + T A+ D
Sbjct: 252 SPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 202 IESCRAMNSSFLVPENLT--TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPK 259
+E C+ F V N T + D GHGTH +A + + +YG+ +P+
Sbjct: 48 VEQCK----DFTVGTNFTDNSCTDRQGHGTHVAGSALANGGTGSGVYGV--------APE 95
Query: 260 ARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSK-------PKEHFESS 312
A L AYKV G + AD IA AI D +A L +K S
Sbjct: 96 ADLWAYKVL----GDDGSGYADDIA---EAIRHAGDQATA-LNTKVVINMSLGSSGESSL 147
Query: 313 VAVGSFHAMMHGILVVASAGNSGP 336
+ +A G+L++A+AGNSGP
Sbjct: 148 ITNAVDYAYDKGVLIIAAAGNSGP 171
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD 583
D++APGV I + + + Y +SGT+MA PHVAG L+ L D
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD 583
D++APGV I + + + Y +SGT+MA PHVAG L+ L D
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 27/97 (27%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV I + + + Y +SGT+MA PHVAG L+ L D
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAED--- 269
Query: 587 AAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623
A K ++ S+ I Q+ ++ATP + A
Sbjct: 270 -AFKRSL---------SETEIYAQLV-RRATPIGFTA 295
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 27/97 (27%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D++APGV I + + + Y +SGT+MA PHVAG L+ L D
Sbjct: 208 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAED--- 251
Query: 587 AAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623
A K ++ S+ I Q+ ++ATP + A
Sbjct: 252 -AFKRSL---------SETEIYAQLV-RRATPIGFTA 277
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ APG I +A+ +D Y +SGTSMA PHVAG+A L + +P
Sbjct: 196 DLFAPGSQIKSAW----------YDG---GYKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 587 AAIKSAIMTTAT 598
+ + + A+
Sbjct: 243 LQLTGLLNSRAS 254
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 27/92 (29%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH--- 581
K ++APG DI+ A N G + +SGTS A P V+G+A L+ +L
Sbjct: 198 KQGILAPGKDILGAKPN--GGTIR-----------LSGTSFATPIVSGVAALLLSLQIKR 244
Query: 582 ---PDWSPAAIKSAIMTTAT------TEDSSK 604
PD P +K+A++ +AT T+D S+
Sbjct: 245 GEKPD--PQKVKNALLASATPCNPKDTDDQSR 274
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDW 584
K ++APG +I+ A P EE P R ++GTSMA P + GI+ L+ +L
Sbjct: 265 KEGILAPGEEILGA-----QPCTEE--PVR-----LTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 585 ----SPAAIKSAIMTTATTED 601
A+++A++ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDW 584
K ++APG +I+ A P EE P R ++GTSMA P + GI+ L+ +L
Sbjct: 265 KEGILAPGEEILGA-----QPCTEE--PVR-----LTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 585 ----SPAAIKSAIMTTATTED 601
A+++A++ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDW 584
K ++APG +I+ A P EE P R ++GTSMA P + GI+ L+ +L
Sbjct: 247 KEGILAPGEEILGA-----QPCTEE--PVR-----LTGTSMAAPVMTGISALLMSLQVQQ 294
Query: 585 ----SPAAIKSAIMTTATTED 601
A+++A++ TA D
Sbjct: 295 GKPVDAEAVRTALLKTAIPCD 315
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIA 574
D+ APG I + + N +SGTSMA PH+AG+A
Sbjct: 201 DIFAPGTSITSTWIGGR-------------TNTISGTSMATPHIAGLA 235
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ APG +I++ + N +SGTSMA PH+ G+ + L
Sbjct: 203 DIFAPGSNILSTWIGG-------------TTNTISGTSMATPHIVGLGAYLAGLEGFPGA 249
Query: 587 AAIKSAIMTTAT 598
A+ I T +T
Sbjct: 250 QALCKRIQTLST 261
>pdb|2EVE|A Chain A, X-Ray Crystal Structure Of Protein Pspto5229 From
Pseudomona Syringae. Northeast Structural Genomics
Consortium Target P
Length = 157
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 30/87 (34%)
Query: 568 PHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVN 627
P +AGI +VKT +PD TA DS H + T +K N
Sbjct: 57 PGIAGIGKIVKTAYPD-----------PTALDPDSHYHDA--KATTEK-----------N 92
Query: 628 PNSALDPGLVYDLGPGDYLAYLCGLGY 654
P SALD G V D + GLGY
Sbjct: 93 PWSALDIGFV------DIFKNVLGLGY 113
>pdb|2BJA|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadh
pdb|2BJA|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadh
pdb|2J40|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophilus With Bound Inhibitor L-Proline And Nad.
pdb|2J40|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophilus With Bound Inhibitor L-Proline And Nad.
pdb|2EJD|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine
pdb|2EJD|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine
pdb|2EJL|A Chain A, Crystal Analysis Of Delta1-pyrroline-5-carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-serine
pdb|2EJL|B Chain B, Crystal Analysis Of Delta1-pyrroline-5-carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-serine
Length = 516
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 265 YKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHG 324
+K + G D A FD+A V G K + G++ ++
Sbjct: 282 FKRAYVETGGKDAIIVDETADFDLAAEGVVVSAYGFQGQKXSAASRLILTQGAYEPVLER 341
Query: 325 ILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGN---KMVIKGASIAEKG 381
+L A + GPAE+ D P V ++ +R+ SY+ +G ++V+ G + +G
Sbjct: 342 VLKRAERLSVGPAEENPDLGP-----VVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEG 396
Query: 382 SLTQDFYPLIAGEAAKVANVSNED 405
P + E A ++ E+
Sbjct: 397 YFIA---PTVFTEVPPKARIAQEE 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,886,833
Number of Sequences: 62578
Number of extensions: 1098479
Number of successful extensions: 2704
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2352
Number of HSP's gapped (non-prelim): 231
length of query: 781
length of database: 14,973,337
effective HSP length: 106
effective length of query: 675
effective length of database: 8,340,069
effective search space: 5629546575
effective search space used: 5629546575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)