Query 047013
Match_columns 781
No_of_seqs 465 out of 3104
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 5.1E-52 1.1E-56 446.3 28.7 306 111-598 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 3.8E-50 8.3E-55 447.1 20.2 293 134-638 305-618 (639)
3 cd07478 Peptidases_S8_CspA-lik 100.0 1.1E-49 2.3E-54 445.2 23.6 411 140-624 1-455 (455)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 8.3E-49 1.8E-53 408.5 22.1 243 136-600 1-253 (255)
5 cd07475 Peptidases_S8_C5a_Pept 100.0 6.8E-48 1.5E-52 422.1 25.8 313 134-633 1-346 (346)
6 cd05562 Peptidases_S53_like Pe 100.0 3.4E-48 7.3E-53 406.7 22.3 270 139-633 1-274 (275)
7 cd07497 Peptidases_S8_14 Pepti 100.0 3.1E-48 6.6E-53 412.9 22.2 287 142-597 1-311 (311)
8 cd07489 Peptidases_S8_5 Peptid 100.0 4.8E-47 1E-51 408.9 24.4 294 133-636 3-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.5E-46 3.2E-51 393.4 23.2 249 135-603 2-255 (267)
10 cd05561 Peptidases_S8_4 Peptid 100.0 7.9E-46 1.7E-50 382.6 22.0 238 145-624 1-239 (239)
11 cd07474 Peptidases_S8_subtilis 100.0 4.1E-45 8.9E-50 391.4 26.0 292 142-631 1-295 (295)
12 cd07493 Peptidases_S8_9 Peptid 100.0 1E-44 2.2E-49 380.8 23.5 245 144-598 1-261 (261)
13 cd07481 Peptidases_S8_Bacillop 100.0 1.2E-44 2.7E-49 380.7 22.8 247 142-598 1-264 (264)
14 KOG1153 Subtilisin-related pro 100.0 6.4E-45 1.4E-49 377.0 19.2 333 24-598 77-461 (501)
15 cd07483 Peptidases_S8_Subtilis 100.0 1.9E-44 4.2E-49 383.4 22.8 270 143-598 1-291 (291)
16 cd07485 Peptidases_S8_Fervidol 100.0 3.1E-44 6.8E-49 379.5 22.2 264 134-596 1-273 (273)
17 cd04857 Peptidases_S8_Tripepti 100.0 1.2E-43 2.6E-48 384.0 25.3 223 222-600 182-412 (412)
18 cd07487 Peptidases_S8_1 Peptid 100.0 3.1E-43 6.6E-48 370.9 23.1 257 142-598 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.4E-42 3.1E-47 363.5 23.7 233 135-599 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 2.5E-42 5.5E-47 362.8 22.5 241 133-600 19-259 (260)
21 cd04847 Peptidases_S8_Subtilis 100.0 1E-42 2.2E-47 371.5 19.0 266 146-598 2-291 (291)
22 cd07490 Peptidases_S8_6 Peptid 100.0 3.1E-42 6.6E-47 361.1 22.1 253 144-598 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 4.4E-42 9.4E-47 365.5 22.8 207 220-596 66-285 (285)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 2E-41 4.3E-46 362.7 24.7 279 138-598 2-293 (293)
25 cd07494 Peptidases_S8_10 Pepti 100.0 1.5E-41 3.2E-46 361.0 22.4 248 133-601 11-286 (298)
26 cd07480 Peptidases_S8_12 Pepti 100.0 1.9E-41 4.1E-46 362.4 21.4 265 137-629 2-296 (297)
27 cd07498 Peptidases_S8_15 Pepti 100.0 1.4E-41 3E-46 353.4 19.8 240 145-596 1-242 (242)
28 cd04843 Peptidases_S8_11 Pepti 100.0 4.4E-41 9.6E-46 353.3 21.1 244 133-598 5-277 (277)
29 cd07477 Peptidases_S8_Subtilis 100.0 1.1E-40 2.4E-45 343.7 21.6 227 144-596 1-229 (229)
30 cd07473 Peptidases_S8_Subtilis 100.0 2.5E-40 5.4E-45 347.6 23.1 250 143-598 2-259 (259)
31 cd07491 Peptidases_S8_7 Peptid 100.0 2.1E-40 4.5E-45 342.6 17.6 161 142-356 2-171 (247)
32 cd04059 Peptidases_S8_Protein_ 100.0 6.9E-40 1.5E-44 351.3 19.1 249 133-598 29-297 (297)
33 PF00082 Peptidase_S8: Subtila 100.0 2.3E-40 5E-45 352.5 14.0 274 146-633 1-282 (282)
34 cd07492 Peptidases_S8_8 Peptid 100.0 2.4E-39 5.1E-44 331.9 20.8 221 144-598 1-222 (222)
35 KOG4266 Subtilisin kexin isozy 100.0 3.3E-39 7.1E-44 342.5 22.0 361 26-634 48-466 (1033)
36 cd07482 Peptidases_S8_Lantibio 100.0 2.5E-39 5.5E-44 346.6 20.9 207 220-596 48-294 (294)
37 cd04848 Peptidases_S8_Autotran 100.0 2.2E-38 4.9E-43 334.3 20.1 244 141-598 1-267 (267)
38 KOG1114 Tripeptidyl peptidase 100.0 1.2E-33 2.5E-38 313.1 22.9 240 225-633 310-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1.9E-33 4.2E-38 289.6 15.3 192 221-596 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 4.8E-31 1.1E-35 272.9 22.2 197 220-596 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 9E-24 1.9E-28 242.9 22.7 272 133-633 130-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 3E-24 6.4E-29 217.5 10.6 310 132-654 150-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 3.2E-17 6.9E-22 179.5 13.4 101 251-358 81-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.2 8.3E-11 1.8E-15 111.4 11.0 107 407-518 34-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 3.9E-10 8.3E-15 104.6 12.2 122 364-492 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 5E-09 1.1E-13 89.2 8.0 78 29-114 1-82 (82)
47 PF06280 DUF1034: Fn3-like dom 98.8 6.1E-08 1.3E-12 87.8 11.2 91 685-777 1-112 (112)
48 cd04816 PA_SaNapH_like PA_SaNa 98.7 6.5E-08 1.4E-12 89.0 9.4 87 406-492 29-121 (122)
49 cd02129 PA_hSPPL_like PA_hSPPL 98.7 7.2E-08 1.6E-12 87.0 9.2 82 405-486 29-115 (120)
50 cd02122 PA_GRAIL_like PA _GRAI 98.7 7.9E-08 1.7E-12 89.7 9.8 89 405-493 43-138 (138)
51 KOG3525 Subtilisin-like propro 98.7 1.5E-07 3.2E-12 104.3 11.9 156 133-338 23-188 (431)
52 cd02127 PA_hPAP21_like PA_hPAP 98.6 2E-07 4.3E-12 84.7 9.7 87 406-493 21-116 (118)
53 cd04818 PA_subtilisin_1 PA_sub 98.6 2.5E-07 5.5E-12 84.6 9.7 87 405-492 26-117 (118)
54 PF02225 PA: PA domain; Inter 98.6 6.4E-08 1.4E-12 85.8 4.9 79 405-483 18-101 (101)
55 cd02126 PA_EDEM3_like PA_EDEM3 98.5 3.5E-07 7.6E-12 84.4 9.1 86 406-492 27-125 (126)
56 cd02130 PA_ScAPY_like PA_ScAPY 98.5 3.7E-07 8E-12 84.0 9.1 85 407-492 32-121 (122)
57 cd00538 PA PA: Protease-associ 98.5 3.3E-07 7.2E-12 84.8 8.8 88 405-492 29-125 (126)
58 cd04817 PA_VapT_like PA_VapT_l 98.5 5.1E-07 1.1E-11 83.9 8.5 74 413-486 49-134 (139)
59 cd02132 PA_GO-like PA_GO-like: 98.4 8E-07 1.7E-11 83.5 9.3 84 406-492 48-138 (139)
60 cd02124 PA_PoS1_like PA_PoS1_l 98.4 1.4E-06 3.1E-11 80.4 9.5 87 405-492 40-128 (129)
61 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.4E-06 3E-11 80.3 9.1 88 405-492 21-126 (127)
62 COG4934 Predicted protease [Po 98.4 3.2E-06 7E-11 100.7 14.3 96 251-353 286-395 (1174)
63 cd04813 PA_1 PA_1: Protease-as 98.3 2E-06 4.4E-11 77.9 8.5 79 405-485 26-111 (117)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.2 5.2E-06 1.1E-10 79.2 9.2 83 406-488 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 98.1 2.3E-05 5E-10 72.5 9.8 79 411-489 35-123 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.2 0.0011 2.5E-08 61.8 7.9 78 415-492 34-133 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.0016 3.6E-08 63.3 6.5 70 416-485 51-155 (183)
68 PF14874 PapD-like: Flagellar- 96.9 0.025 5.4E-07 50.0 12.8 82 693-780 20-101 (102)
69 KOG2442 Uncharacterized conser 96.1 0.018 4E-07 62.6 8.3 79 416-494 91-176 (541)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 95.6 0.019 4.1E-07 53.4 5.2 49 406-454 35-96 (137)
71 PF10633 NPCBM_assoc: NPCBM-as 95.4 0.063 1.4E-06 44.9 7.2 64 693-758 5-69 (78)
72 cd04814 PA_M28_1 PA_M28_1: Pro 95.2 0.025 5.4E-07 52.9 4.6 49 406-454 33-100 (142)
73 cd04822 PA_M28_1_3 PA_M28_1_3: 95.2 0.068 1.5E-06 50.6 7.6 77 406-482 33-131 (151)
74 cd02131 PA_hNAALADL2_like PA_h 95.2 0.026 5.5E-07 52.8 4.5 38 417-454 37-75 (153)
75 cd02121 PA_GCPII_like PA_GCPII 94.6 0.049 1.1E-06 55.0 5.2 49 406-454 52-106 (220)
76 PF06030 DUF916: Bacterial pro 92.7 2.1 4.5E-05 39.1 11.8 77 685-766 19-119 (121)
77 PF11614 FixG_C: IG-like fold 92.6 2.4 5.2E-05 38.4 12.2 55 693-748 31-85 (118)
78 KOG4628 Predicted E3 ubiquitin 91.9 0.41 8.9E-06 51.3 7.0 80 407-486 63-150 (348)
79 KOG3920 Uncharacterized conser 91.7 0.22 4.8E-06 46.1 4.1 88 405-493 73-171 (193)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 86.8 1.1 2.3E-05 43.0 4.9 42 412-453 41-102 (157)
81 COG1470 Predicted membrane pro 83.6 11 0.00024 41.8 11.3 72 692-766 396-468 (513)
82 COG1470 Predicted membrane pro 83.0 16 0.00034 40.7 12.1 55 693-748 284-344 (513)
83 PF00345 PapD_N: Pili and flag 81.4 12 0.00027 33.9 9.5 69 693-766 14-89 (122)
84 KOG1114 Tripeptidyl peptidase 79.3 1.3 2.9E-05 52.4 2.7 49 727-781 636-689 (1304)
85 PF00635 Motile_Sperm: MSP (Ma 73.0 29 0.00062 30.5 9.2 53 693-748 18-70 (109)
86 TIGR02745 ccoG_rdxA_fixG cytoc 71.2 21 0.00046 40.2 9.4 55 693-748 346-400 (434)
87 PF07610 DUF1573: Protein of u 69.7 17 0.00037 26.6 5.7 44 699-745 2-45 (45)
88 PF00927 Transglut_C: Transglu 62.4 52 0.0011 29.0 8.5 56 692-748 14-77 (107)
89 PF07705 CARDB: CARDB; InterP 61.4 45 0.00099 28.5 8.0 51 693-747 19-71 (101)
90 PF12690 BsuPI: Intracellular 59.7 27 0.00058 29.5 5.7 52 695-747 2-70 (82)
91 PF07718 Coatamer_beta_C: Coat 56.2 77 0.0017 29.6 8.5 69 693-766 69-138 (140)
92 PF07172 GRP: Glycine rich pro 50.3 7.1 0.00015 33.9 0.8 15 1-16 1-15 (95)
93 PF05506 DUF756: Domain of unk 48.1 1.1E+02 0.0023 26.0 7.8 49 693-746 18-66 (89)
94 smart00635 BID_2 Bacterial Ig- 42.1 76 0.0016 26.4 5.8 39 722-768 4-42 (81)
95 PRK15098 beta-D-glucoside gluc 40.6 67 0.0014 39.3 7.3 54 693-749 667-729 (765)
96 KOG2018 Predicted dinucleotide 40.5 32 0.0007 36.3 3.9 79 253-332 137-245 (430)
97 PF08260 Kinin: Insect kinin p 36.4 16 0.00035 16.5 0.4 6 510-515 3-8 (8)
98 COG4808 Uncharacterized protei 31.5 1.4E+02 0.0031 27.5 5.9 46 58-103 80-125 (152)
99 PF05753 TRAP_beta: Translocon 31.2 2.9E+02 0.0064 27.1 8.8 54 692-747 37-97 (181)
100 PRK15019 CsdA-binding activato 31.0 47 0.001 31.4 3.1 34 557-591 76-109 (147)
101 PF02845 CUE: CUE domain; Int 30.8 52 0.0011 23.6 2.7 23 574-596 5-27 (42)
102 PLN03080 Probable beta-xylosid 30.8 82 0.0018 38.5 5.9 53 694-747 685-744 (779)
103 TIGR03391 FeS_syn_CsdE cystein 29.2 53 0.0011 30.7 3.1 35 557-592 71-105 (138)
104 PF00553 CBM_2: Cellulose bind 29.0 3.9E+02 0.0084 23.2 8.5 32 693-724 13-45 (101)
105 PF13940 Ldr_toxin: Toxin Ldr, 28.8 44 0.00096 22.7 1.7 13 565-577 14-26 (35)
106 PF04744 Monooxygenase_B: Mono 28.5 1.5E+02 0.0033 32.2 6.6 51 692-746 262-334 (381)
107 PRK09296 cysteine desufuration 25.9 65 0.0014 30.1 3.0 34 557-591 66-99 (138)
108 COG2166 sufE Cysteine desulfur 25.2 64 0.0014 30.3 2.8 33 558-591 72-104 (144)
109 PF02657 SufE: Fe-S metabolism 24.8 75 0.0016 29.2 3.2 35 557-592 57-91 (125)
110 PRK13203 ureB urease subunit b 22.0 2.5E+02 0.0055 24.6 5.6 51 693-744 18-82 (102)
111 cd00407 Urease_beta Urease bet 21.8 2.6E+02 0.0057 24.5 5.6 51 693-744 18-82 (101)
112 PRK15308 putative fimbrial pro 21.4 3.2E+02 0.0069 28.1 7.3 53 694-747 32-100 (234)
113 PF08821 CGGC: CGGC domain; I 21.4 3.1E+02 0.0068 24.4 6.3 65 258-329 36-104 (107)
114 PF14016 DUF4232: Protein of u 21.3 6.3E+02 0.014 23.0 10.4 55 693-748 18-83 (131)
115 smart00546 CUE Domain that may 21.2 1.4E+02 0.003 21.4 3.4 24 573-596 5-28 (43)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-52 Score=446.35 Aligned_cols=306 Identities=52% Similarity=0.826 Sum_probs=258.8
Q ss_pred ecccccCCccccCcccCCCCCCccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCC-CCccccCc
Q 047013 111 IDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDT-NKAITCNR 189 (781)
Q Consensus 111 ~~~~~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~-~~~~~~n~ 189 (781)
++++++++++++++...... .+|..+++|+||+|||||||||++||+|.+++..+++..|.+.|..+. +....|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGG---SLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCCCc---ccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 46888999999999865321 257789999999999999999999999999988999999999999887 66678999
Q ss_pred eeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeeccccc
Q 047013 190 KLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCW 269 (781)
Q Consensus 190 ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~ 269 (781)
|+++.++|.++++..... ..+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++
T Consensus 78 ki~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 78 KLIGARYFSDGYDAYGGF-----NSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred eEEEEEEcccchhhccCc-----ccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 999999998876654321 112335577899999999999999998776666666667789999999999999998
Q ss_pred CCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceE
Q 047013 270 KPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVL 349 (781)
Q Consensus 270 ~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vi 349 (781)
..+ .+..+++++||++|++++++|||||||......+.+.+..++..+.++|++||+||||+|+...+.++..||++
T Consensus 153 ~~~---~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 153 PDG---GCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred CCC---CccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 744 48899999999999999999999999998544566778888889999999999999999988778888899999
Q ss_pred EecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecC
Q 047013 350 TVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDA 429 (781)
Q Consensus 350 tVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g 429 (781)
+|||++
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 999710
Q ss_pred CcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccc
Q 047013 430 KIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTS 509 (781)
Q Consensus 430 ~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 509 (781)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHH
Q 047013 510 FFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAI 589 (781)
Q Consensus 510 ~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~i 589 (781)
+||||+|||++|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.||
T Consensus 236 --------------~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v 298 (307)
T cd04852 236 --------------LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAI 298 (307)
T ss_pred --------------CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 47799999999999987531 1112233358999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 047013 590 KSAIMTTAT 598 (781)
Q Consensus 590 k~~L~~TA~ 598 (781)
|++|++||+
T Consensus 299 ~~~L~~tA~ 307 (307)
T cd04852 299 KSALMTTAY 307 (307)
T ss_pred HHHHHHhcC
Confidence 999999984
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.8e-50 Score=447.08 Aligned_cols=293 Identities=21% Similarity=0.187 Sum_probs=209.7
Q ss_pred cccc--cCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCC
Q 047013 134 SAWN--KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSS 211 (781)
Q Consensus 134 ~~w~--~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (781)
.+|+ .+.+|+||+|||||||||++||||.++-..... ...|.....+ +.......+ .+++|.++
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~GrdgiDd-D~nG~vdd~-~G~nfVd~----------- 370 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGRKGIDD-DNNGNVDDE-YGANFVNN----------- 370 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCcccccc-ccCCccccc-ccccccCC-----------
Confidence 4555 456899999999999999999999864110000 0001000000 000000001 11222221
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
...+.|..||||||||||||...++ ..+.||||+|+|+++|+++..+ .+..+++++||+||++
T Consensus 371 ------~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G---~G~~sdI~~AI~yA~~ 433 (639)
T PTZ00262 371 ------DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHK---LGRLGDMFKCFDYCIS 433 (639)
T ss_pred ------CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCC---CccHHHHHHHHHHHHH
Confidence 2256789999999999999986432 2358999999999999998766 5788999999999999
Q ss_pred cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC--------------ccC----CCCceEEecc
Q 047013 292 DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT--------------VDN----VPPWVLTVGA 353 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVgA 353 (781)
.|++|||||||... +...+..++..|.++|++||+||||+|..... ++. ..+++|+|||
T Consensus 434 ~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGA 510 (639)
T PTZ00262 434 REAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSN 510 (639)
T ss_pred CCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEee
Confidence 99999999999762 34567888899999999999999999854211 111 2467788877
Q ss_pred cCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcch
Q 047013 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGD 433 (781)
Q Consensus 354 ~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 433 (781)
++.+..
T Consensus 511 v~~d~~-------------------------------------------------------------------------- 516 (639)
T PTZ00262 511 LIKDKN-------------------------------------------------------------------------- 516 (639)
T ss_pred ccCCCC--------------------------------------------------------------------------
Confidence 433210
Q ss_pred HHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccC
Q 047013 434 AKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSA 513 (781)
Q Consensus 434 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs 513 (781)
.....+.||+
T Consensus 517 ----------------------------------------------------------------------~~~s~s~~Sn 526 (639)
T PTZ00262 517 ----------------------------------------------------------------------NQYSLSPNSF 526 (639)
T ss_pred ----------------------------------------------------------------------Cccccccccc
Confidence 0013345667
Q ss_pred CCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 047013 514 RGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAI 593 (781)
Q Consensus 514 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L 593 (781)
+|.. ++||+|||++|+|+++.+ .|..++|||||||||||++|||++++|+|++++|+++|
T Consensus 527 yg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL 586 (639)
T PTZ00262 527 YSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRIL 586 (639)
T ss_pred CCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 7621 349999999999998764 89999999999999999999999999999999999999
Q ss_pred HhccccCCCCCCcccccCCCCCCCCCccc-CCcccccccCCCCeee
Q 047013 594 MTTATTEDSSKHPILDQVTGQKATPFAYG-AGHVNPNSALDPGLVY 638 (781)
Q Consensus 594 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~G-~G~in~~~Av~~~l~~ 638 (781)
++||.++... +..+| .|+||+++||+.++-+
T Consensus 587 ~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 587 KESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999876321 12233 3899999999976644
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.1e-49 Score=445.20 Aligned_cols=411 Identities=21% Similarity=0.217 Sum_probs=260.0
Q ss_pred CCCCceEEEEecCCCCcCCCCccC-CCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCC
Q 047013 140 RFGEDVIIGNLDSGVWPESQSFTD-EGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENL 218 (781)
Q Consensus 140 ~~G~gv~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~ 218 (781)
++|+||+|||||||||+.||+|++ ++.+|+...|++....... ......+..+..+..+...... +|.+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~-----~p~~~ 71 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP----PGGYYGGGEYTEEIINAALASD-----NPYDI 71 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC----CccccCceEEeHHHHHHHHhcC-----Ccccc
Confidence 479999999999999999999986 5688999999998775431 1111222333332333322221 23445
Q ss_pred CCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCC-------CCCChHHHHHHHHHhhh
Q 047013 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGA-------NLCNAADIIAGFDVAIH 291 (781)
Q Consensus 219 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~-------~~~~~~~i~~ai~~a~~ 291 (781)
....|..||||||||||||+..++ ..+.||||+|+|+++|++...+.. ..+...+++.||+|+++
T Consensus 72 ~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~ 143 (455)
T cd07478 72 VPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYD 143 (455)
T ss_pred CcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHH
Confidence 567899999999999999997432 345899999999999999876521 12678999999999886
Q ss_pred c-----CCcEEEecCCCCC-CCCCCChHHHHHHHHHhC-CCEEEEecCCCCCCCCCccCCC-C------ceEEecccCCc
Q 047013 292 D-----GVDIISASLGSKP-KEHFESSVAVGSFHAMMH-GILVVASAGNSGPAEKTVDNVP-P------WVLTVGASTTD 357 (781)
Q Consensus 292 ~-----g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~-p------~vitVgA~~~d 357 (781)
. .++|||||||... .....+.++.++..+..+ |++||+||||+|....+..... + --+.|+.-.
T Consensus 144 ~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~-- 221 (455)
T cd07478 144 KALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE-- 221 (455)
T ss_pred HHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--
Confidence 4 4789999999873 344567788888887766 9999999999997655554311 0 012233211
Q ss_pred eeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccc---cCCCCCCCCCCCCceeEEEEEecCC-c--
Q 047013 358 REFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNED---ATQCKNGTIDPEKVKGKILICYDAK-I-- 431 (781)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~---~~~c~~~~~~~~~~~gkivl~~~g~-~-- 431 (781)
..+..+++..... .+...+.+|++.... ........+.-..-..++.+..+.. .
T Consensus 222 ~~~~~eiW~~~~d--------------------~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~ 281 (455)
T cd07478 222 KGFNLEIWGDFPD--------------------RFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYT 281 (455)
T ss_pred cceEEEEecCCCC--------------------EEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCC
Confidence 1111112211100 111111122111100 0000000000000112222222211 0
Q ss_pred ----chHHHHHHHhcCceEEEEecCCCCccccccc-cccccEEEEehhhHHHHHHHHhcCCCcEEEEecc----eeeecc
Q 047013 432 ----GDAKGQRAAQAGAVGMILANSREDQNISLNM-VHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNS----ITEFNK 502 (781)
Q Consensus 432 ----~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~----~~~~~~ 502 (781)
.... ..-...|.+-+.++.... .... ..|+|.-.+..++. .++...+..++++... .++..+
T Consensus 282 g~~~i~i~-~~~~~~GiW~i~~~~~~~----~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~ 352 (455)
T cd07478 282 GDQLIFIR-FKNIKPGIWKIRLTGVSI----TDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAY 352 (455)
T ss_pred CCeEEEEE-ccCCCccceEEEEEeccC----CCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEE
Confidence 0000 111223444444443221 1222 24777665554433 2345556666666533 345555
Q ss_pred cc-CCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC
Q 047013 503 IW-SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581 (781)
Q Consensus 503 ~~-~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 581 (781)
+. .+.++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 353 ~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~ 417 (455)
T cd07478 353 NQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWG 417 (455)
T ss_pred eCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhc
Confidence 55 35699999999998 8999999999999999999864 89999999999999999999999975
Q ss_pred ------CCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCC
Q 047013 582 ------PDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAG 624 (781)
Q Consensus 582 ------p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 624 (781)
|.|++++||++|++||+++.. ..+++++||||
T Consensus 418 ~~~~~~p~~~~~~ik~~L~~tA~~~~~-----------~~~pn~~~GyG 455 (455)
T cd07478 418 IVRGNDPYLYGEKIKTYLIRGARRRPG-----------DEYPNPEWGYG 455 (455)
T ss_pred hhccCCCCCCHHHHHHHHHHhCccCCC-----------CCCCCCCCCCC
Confidence 567999999999999988631 35678899998
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=8.3e-49 Score=408.53 Aligned_cols=243 Identities=24% Similarity=0.337 Sum_probs=199.4
Q ss_pred cccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccC
Q 047013 136 WNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVP 215 (781)
Q Consensus 136 w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p 215 (781)
|+++++|+||+|||||||||.+||+|.+. ....+|.+
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~---------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN---------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC----------------
Confidence 89999999999999999999999999742 00011111
Q ss_pred CCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCc
Q 047013 216 ENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVD 295 (781)
Q Consensus 216 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~d 295 (781)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ .+..+.++++|+||++++++
T Consensus 38 --~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~a~~~a~~~~~~ 101 (255)
T cd07479 38 --EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQ---VSYTSWFLDAFNYAILTKID 101 (255)
T ss_pred --CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCC---CchHHHHHHHHHhhhhcCCC
Confidence 11345778999999999999741 248999999999999998765 46678899999999999999
Q ss_pred EEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc--cCCCCceEEecccCCceeeeeeEEeCCceEEe
Q 047013 296 IISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV--DNVPPWVLTVGASTTDREFSSYVTLGNKMVIK 373 (781)
Q Consensus 296 VIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~ 373 (781)
|||||||... +.+.++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 102 Vin~S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------- 162 (255)
T cd07479 102 VLNLSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------- 162 (255)
T ss_pred EEEeeccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------
Confidence 9999999863 3445677778888899999999999999754443 445688999998432
Q ss_pred eeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCC
Q 047013 374 GASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSR 453 (781)
Q Consensus 374 g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~ 453 (781)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC----CCCCccCeee
Q 047013 454 EDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI----DPAILKPDVI 529 (781)
Q Consensus 454 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~ 529 (781)
.+.++.|||+|++.. ..+++||||.
T Consensus 163 ---------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~ 191 (255)
T cd07479 163 ---------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIV 191 (255)
T ss_pred ---------------------------------------------------CCccccccCCCCCcccccCCCCCcCccEE
Confidence 257889999996521 2678899999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCC----CCCHHHHHHHHHhccccC
Q 047013 530 APGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHP----DWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 530 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~lt~~~ik~~L~~TA~~~ 600 (781)
|||.+|+++.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 192 apG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 192 TYGSGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred ecCCCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9999999876543 788999999999999999999999998 789999999999999876
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=6.8e-48 Score=422.13 Aligned_cols=313 Identities=28% Similarity=0.332 Sum_probs=237.0
Q ss_pred cccccCC-CCCceEEEEecCCCCcCCCCccCCCCCCCCC-----CCcccccCCCCCccccCceeeeeEeccchhhhhhcc
Q 047013 134 SAWNKAR-FGEDVIIGNLDSGVWPESQSFTDEGMGPIPD-----RWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRA 207 (781)
Q Consensus 134 ~~w~~~~-~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 207 (781)
++|+++. +|+||+|||||||||++||+|.+....+... .+...+.. ....+++.+++..++|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCCCc----
Confidence 3788888 9999999999999999999998764332211 11111111 2345667788888877765211
Q ss_pred CCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccC--CCCCCCCChHHHHHH
Q 047013 208 MNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWK--PNGANLCNAADIIAG 285 (781)
Q Consensus 208 ~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~--~~~~~~~~~~~i~~a 285 (781)
.....+..+|||||||||+|...+.. .+..+.||||+|+|+.+|+++. .. .+....+++|
T Consensus 75 ----------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~---~~~~~~~~~a 136 (346)
T cd07475 75 ----------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG---STYDDAYAKA 136 (346)
T ss_pred ----------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC---CCCHHHHHHH
Confidence 11245789999999999999874321 1235699999999999999974 33 4778899999
Q ss_pred HHHhhhcCCcEEEecCCCCCCC-CCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCcc----------------CCCCce
Q 047013 286 FDVAIHDGVDIISASLGSKPKE-HFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVD----------------NVPPWV 348 (781)
Q Consensus 286 i~~a~~~g~dVIN~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----------------~~~p~v 348 (781)
++++++.|++|||||||..... .....+..++.++.++|++||+||||+|....... ...+++
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 9999999999999999998422 34566788888999999999999999986443211 234566
Q ss_pred EEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEec
Q 047013 349 LTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYD 428 (781)
Q Consensus 349 itVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 428 (781)
|+||++...
T Consensus 217 i~Vga~~~~----------------------------------------------------------------------- 225 (346)
T cd07475 217 LTVASANKK----------------------------------------------------------------------- 225 (346)
T ss_pred eEEeecccc-----------------------------------------------------------------------
Confidence 666663210
Q ss_pred CCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcc
Q 047013 429 AKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMT 508 (781)
Q Consensus 429 g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 508 (781)
......+.+
T Consensus 226 -----------------------------------------------------------------------~~~~~~~~~ 234 (346)
T cd07475 226 -----------------------------------------------------------------------VPNPNGGQM 234 (346)
T ss_pred -----------------------------------------------------------------------cCCCCCCcc
Confidence 001123678
Q ss_pred ccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHh----CCCC
Q 047013 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL----HPDW 584 (781)
Q Consensus 509 a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~l 584 (781)
+.||+|||+. ..++||||+|||.+|+++...+ .|..++|||||||+|||++|||+|+ +|.|
T Consensus 235 ~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l 299 (346)
T cd07475 235 SGFSSWGPTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKL 299 (346)
T ss_pred CCCcCCCCCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 8999999998 8999999999999999987763 7899999999999999999999998 7899
Q ss_pred CHHH----HHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCC
Q 047013 585 SPAA----IKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 585 t~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
++.+ ||.+|++||.+..... ....++.+.++|+|+||+.+|++
T Consensus 300 ~~~~~~~~ik~~l~~ta~~~~~~~------~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 300 SGEELVDLVKNLLMNTATPPLDSE------DTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CHHHHHHHHHHHHHhcCCcccccC------CCCccCCccccCcchhcHHHhhC
Confidence 9876 7889999998531110 33456778899999999999985
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3.4e-48 Score=406.71 Aligned_cols=270 Identities=24% Similarity=0.226 Sum_probs=201.7
Q ss_pred CCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCC
Q 047013 139 ARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENL 218 (781)
Q Consensus 139 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~ 218 (781)
+++|+||+|||||||||.+||++.+..- .++.+...+... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~----------------------~~l~~~~~~~~~-----------------~ 41 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS----------------------GDLPGNVNVLGD-----------------L 41 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC----------------------CCCCcceeeccc-----------------c
Confidence 5799999999999999999986543211 111111111111 1
Q ss_pred CCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEE
Q 047013 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIIS 298 (781)
Q Consensus 219 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN 298 (781)
....|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||
T Consensus 42 ~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vin 95 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADIIV 95 (275)
T ss_pred CCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEEE
Confidence 134578899999999994 77999999998873 3478899999999999999999
Q ss_pred ecCCCCCCCC-CCChHHHHHHHHHhC-CCEEEEecCCCCCCCC-CccCCCCceEEecccCCceeeeeeEEeCCceEEeee
Q 047013 299 ASLGSKPKEH-FESSVAVGSFHAMMH-GILVVASAGNSGPAEK-TVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGA 375 (781)
Q Consensus 299 ~SlG~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~ 375 (781)
||||...... .+..+..++.++.++ |++||+||||+|.... ..+...|++|+|||++.+.......
T Consensus 96 ~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------- 164 (275)
T cd05562 96 DDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------- 164 (275)
T ss_pred ecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-----------
Confidence 9999864333 334677888888887 9999999999997543 3345789999999976442100000
Q ss_pred eeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCC
Q 047013 376 SIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRED 455 (781)
Q Consensus 376 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~ 455 (781)
|.
T Consensus 165 ---------------------------------~~--------------------------------------------- 166 (275)
T cd05562 165 ---------------------------------DP--------------------------------------------- 166 (275)
T ss_pred ---------------------------------cc---------------------------------------------
Confidence 00
Q ss_pred ccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCC-c
Q 047013 456 QNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGV-D 534 (781)
Q Consensus 456 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~ 534 (781)
.........+.||++||+. ++++||||+|||. .
T Consensus 167 --------------------------------------------~~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~ 200 (275)
T cd05562 167 --------------------------------------------APGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVN 200 (275)
T ss_pred --------------------------------------------ccCCCcccccCCcccCcCC--CCCcCCeEEcCCccc
Confidence 0000012345678899987 8899999999975 4
Q ss_pred EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCC
Q 047013 535 IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQ 614 (781)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 614 (781)
+.+.+.. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++...
T Consensus 201 ~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~----------- 256 (275)
T cd05562 201 GTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP----------- 256 (275)
T ss_pred ccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC-----------
Confidence 4544433 2799999999999999999999999999999999999999999887422
Q ss_pred CCCCCcccCCcccccccCC
Q 047013 615 KATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 615 ~~~~~~~G~G~in~~~Av~ 633 (781)
..+..||||+||+.+|++
T Consensus 257 -g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 257 -GYDNASGSGLVDADRAVA 274 (275)
T ss_pred -CCCCCcCcCcccHHHHhh
Confidence 245689999999999987
No 7
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-48 Score=412.94 Aligned_cols=287 Identities=26% Similarity=0.258 Sum_probs=190.8
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
|+||+|||||||||++||+|.++.. ..|...++ +...+. .+++... .....+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d--------~~~~~~------~g~d~~~----------~~~~~~ 52 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD--------YKAYLL------PGMDKWG----------GFYVIM 52 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC--------cCCCcc------CCcCCCC----------CccCCC
Confidence 8999999999999999999975421 01111100 000111 1111110 001246
Q ss_pred CCCCCccccccccccccccccccccccC-CccccccCCCceEeecccccCCCCCCCCChHHHHH-------HHHHh--hh
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMG-YGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIA-------GFDVA--IH 291 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~-~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~-------ai~~a--~~ 291 (781)
.|.+||||||||||||....+.+.+++. ...+.||||+|+|+.+|++...+ .+....+.. +++|. .+
T Consensus 53 ~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~ 129 (311)
T cd07497 53 YDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---VIYAWLWTAGFDPVDRKLSWIYTGG 129 (311)
T ss_pred CCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---cchhhhhhhccchhhhhhhhhhccC
Confidence 7899999999999999864332222211 23569999999999999997543 132222222 34443 36
Q ss_pred cCCcEEEecCCCCCCCC-----CCChHHHHHHHH-HhCCCEEEEecCCCCCCCCC--ccCCCCceEEecccCCceeeeee
Q 047013 292 DGVDIISASLGSKPKEH-----FESSVAVGSFHA-MMHGILVVASAGNSGPAEKT--VDNVPPWVLTVGASTTDREFSSY 363 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~~-----~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgA~~~d~~~~~~ 363 (781)
++++|||||||.....+ ..+..+..+..+ .++|+++|+||||+|+...+ .+..++++|+|||++.....+..
T Consensus 130 ~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~ 209 (311)
T cd07497 130 PRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY 209 (311)
T ss_pred CCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh
Confidence 79999999999863211 112233333332 48999999999999976444 34467999999997533100000
Q ss_pred EEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcC
Q 047013 364 VTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAG 443 (781)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G 443 (781)
...
T Consensus 210 -------------------------~~~---------------------------------------------------- 212 (311)
T cd07497 210 -------------------------LFG---------------------------------------------------- 212 (311)
T ss_pred -------------------------hhc----------------------------------------------------
Confidence 000
Q ss_pred ceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCC
Q 047013 444 AVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAI 523 (781)
Q Consensus 444 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 523 (781)
......+.++.||||||+. +++
T Consensus 213 --------------------------------------------------------~~~~~~~~~~~fSs~Gp~~--~g~ 234 (311)
T cd07497 213 --------------------------------------------------------YLPGGSGDVVSWSSRGPSI--AGD 234 (311)
T ss_pred --------------------------------------------------------cccCCCCCccccccCCCCc--ccC
Confidence 0001136789999999998 899
Q ss_pred ccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 047013 524 LKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHP------DWSPAAIKSAIMTTA 597 (781)
Q Consensus 524 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~lt~~~ik~~L~~TA 597 (781)
+||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 235 ~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 235 PKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999999999876532100 011123799999999999999999999999976 689999999999997
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-47 Score=408.90 Aligned_cols=294 Identities=30% Similarity=0.337 Sum_probs=229.6
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccch-hhhhhccCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEG-LIESCRAMNSS 211 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~ 211 (781)
+.+|+.+++|+||+|||||+|||++||+|.++-. .+.++.+.+++..+ +....
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~~~------ 56 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDGTN------ 56 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCccccccc------
Confidence 5899999999999999999999999999986411 11223333333321 11000
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
.+.+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+ ....+.++++|+++++
T Consensus 57 --~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~ 122 (312)
T cd07489 57 --PPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSG---STTEDTIIAAFLRAYE 122 (312)
T ss_pred --CCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCC---CCCHHHHHHHHHHHHh
Confidence 0111235667799999999999998643 2348999999999999998665 4778889999999999
Q ss_pred cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC---CccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 292 DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK---TVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
++++|||||||... .+....+..++.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 123 ~~~~iIn~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------- 188 (312)
T cd07489 123 DGADVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------- 188 (312)
T ss_pred cCCCEEEeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------
Confidence 99999999999873 334467778888899999999999999986532 2234567888888721
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
+.||+|||+. +...||||
T Consensus 189 ------------------------------------------------------------~~~s~~g~~~--~~~~kpdv 206 (312)
T cd07489 189 ------------------------------------------------------------SYFSSWGPTN--ELYLKPDV 206 (312)
T ss_pred ------------------------------------------------------------CCccCCCCCC--CCCcCccE
Confidence 5689999998 78999999
Q ss_pred eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC-CCCCHHHHHHHHHhccccCCCCCCcc
Q 047013 529 IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH-PDWSPAAIKSAIMTTATTEDSSKHPI 607 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~lt~~~ik~~L~~TA~~~~~~g~~~ 607 (781)
+|||++++++++.... .|..++|||||||+|||++|||+|++ |.+++.+||++|++||..+...+...
T Consensus 207 ~ApG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~ 275 (312)
T cd07489 207 AAPGGNILSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTS 275 (312)
T ss_pred EcCCCCEEEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCc
Confidence 9999999999876522 58999999999999999999999999 99999999999999999874322111
Q ss_pred cccCCCCCCCCCcccCCcccccccCCCCe
Q 047013 608 LDQVTGQKATPFAYGAGHVNPNSALDPGL 636 (781)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~in~~~Av~~~l 636 (781)
....+++..++|||+||+.+|++..-
T Consensus 276 ---~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 276 ---ALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred ---cccCCCCHhhcCcceeeHHHHhcCCc
Confidence 11124677899999999999999643
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.5e-46 Score=393.36 Aligned_cols=249 Identities=27% Similarity=0.324 Sum_probs=203.8
Q ss_pred ccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCcc
Q 047013 135 AWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLV 214 (781)
Q Consensus 135 ~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (781)
+|..+++|+||+|||||+|||++||+|++..+.+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~--------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAA--------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCccc---------------
Confidence 79999999999999999999999999986421110 00000
Q ss_pred CCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCC
Q 047013 215 PENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGV 294 (781)
Q Consensus 215 p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~ 294 (781)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+. .++..++++||+||+++|+
T Consensus 42 --~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~--~~~~~~i~~ai~~a~~~g~ 107 (267)
T cd07476 42 --AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRR--GCSQLDLARAINLALEQGA 107 (267)
T ss_pred --cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCC--CCCHHHHHHHHHHHHHCCC
Confidence 012445778999999999998742 23589999999999999876542 2457889999999999999
Q ss_pred cEEEecCCCCCC-CCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEe
Q 047013 295 DIISASLGSKPK-EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIK 373 (781)
Q Consensus 295 dVIN~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~ 373 (781)
+|||||||.... ......+..++..+.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 108 ~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------- 171 (267)
T cd07476 108 HIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------- 171 (267)
T ss_pred CEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------
Confidence 999999997632 234456788888999999999999999998777777788999999984321
Q ss_pred eeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCC
Q 047013 374 GASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSR 453 (781)
Q Consensus 374 g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~ 453 (781)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCC
Q 047013 454 EDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGV 533 (781)
Q Consensus 454 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 533 (781)
+.++.||+||+.. .||||+|||.
T Consensus 172 ----------------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~ 194 (267)
T cd07476 172 ----------------------------------------------------GLPLKFSNWGADY-----RKKGILAPGE 194 (267)
T ss_pred ----------------------------------------------------CCeeeecCCCCCC-----CCceEEecCC
Confidence 3567899999764 3889999999
Q ss_pred cEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC----CCHHHHHHHHHhccccCCCC
Q 047013 534 DIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD----WSPAAIKSAIMTTATTEDSS 603 (781)
Q Consensus 534 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----lt~~~ik~~L~~TA~~~~~~ 603 (781)
+|+++.+.+ .|..++|||||||||||++|||+|++|. ++|++||++|++||++++..
T Consensus 195 ~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 195 NILGAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred CceeecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999988764 7999999999999999999999999887 89999999999999998543
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.9e-46 Score=382.61 Aligned_cols=238 Identities=26% Similarity=0.359 Sum_probs=193.4
Q ss_pred eEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCC
Q 047013 145 VIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDH 224 (781)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 224 (781)
|+|||||||||.+||+|+++. +..+++.. ....|.
T Consensus 1 V~VavIDsGvd~~hp~l~~~~--------------------------~~~~~~~~-------------------~~~~~~ 35 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV--------------------------IARLFFAG-------------------PGAPAP 35 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc--------------------------cccccCCC-------------------CCCCCC
Confidence 789999999999999997541 11111110 134567
Q ss_pred CCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCC
Q 047013 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSK 304 (781)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 304 (781)
.+|||||||||+|.... . .||||+|+|+.+|++...+....++..++++||+||++.|++|||||||..
T Consensus 36 ~~HGT~vAgiia~~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~ 104 (239)
T cd05561 36 SAHGTAVASLLAGAGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP 104 (239)
T ss_pred CCCHHHHHHHHhCCCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 89999999999998521 1 699999999999999865322246788999999999999999999999975
Q ss_pred CCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC-CCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCC
Q 047013 305 PKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE-KTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383 (781)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~ 383 (781)
. ...+..++.++.++|++||+||||+|... ..++...+++|+||+++.+
T Consensus 105 ~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------------- 154 (239)
T cd05561 105 P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------------- 154 (239)
T ss_pred C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------------
Confidence 2 34677888899999999999999999753 3455667899999984322
Q ss_pred CCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcccccccc
Q 047013 384 TQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMV 463 (781)
Q Consensus 384 ~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 463 (781)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCC
Q 047013 464 HFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEY 543 (781)
Q Consensus 464 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 543 (781)
+.++.||++|+.. ||.|||++|+++.+.+
T Consensus 155 ------------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~- 183 (239)
T cd05561 155 ------------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG- 183 (239)
T ss_pred ------------------------------------------CCccccCCCCCcc--------eEEccccceecccCCC-
Confidence 4677899999987 9999999999977653
Q ss_pred CCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccC
Q 047013 544 GPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623 (781)
Q Consensus 544 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~ 623 (781)
.|..++|||||||||||++|||+|++| ++++|||++|++||++++..+ .+..|||
T Consensus 184 ------------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~------------~d~~~G~ 238 (239)
T cd05561 184 ------------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPG------------RDPVFGY 238 (239)
T ss_pred ------------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCC------------cCCCcCC
Confidence 799999999999999999999999999 999999999999998874332 3468898
Q ss_pred C
Q 047013 624 G 624 (781)
Q Consensus 624 G 624 (781)
|
T Consensus 239 G 239 (239)
T cd05561 239 G 239 (239)
T ss_pred C
Confidence 7
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.1e-45 Score=391.45 Aligned_cols=292 Identities=37% Similarity=0.471 Sum_probs=217.9
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
|+||+|||||+|||++||+|.+.. .++.++...++|............. ..+......
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPMDTRPY--PSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCccccccc--ccccccCCC
Confidence 899999999999999999998531 1233444444444321100000000 000011234
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecC
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASL 301 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~Sl 301 (781)
.|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++..+ .+...+++++|+|+++++++||||||
T Consensus 59 ~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Iin~S~ 127 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGG---SGTTDVIIAAIEQAVDDGMDVINLSL 127 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCC---CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 56899999999999998643 22458999999999999998554 47889999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc--cCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeec
Q 047013 302 GSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV--DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAE 379 (781)
Q Consensus 302 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~ 379 (781)
|.... ...+.+..++..+.++|+++|+||||+|...... +...+++|+|||+....
T Consensus 128 g~~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------------- 185 (295)
T cd07474 128 GSSVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------------- 185 (295)
T ss_pred CCCCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------------
Confidence 98732 2456788888999999999999999998765444 44678999999853110
Q ss_pred cCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcccc
Q 047013 380 KGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNIS 459 (781)
Q Consensus 380 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 459 (781)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccC-CCCCCCCCCCccCeeeeCCCcEEee
Q 047013 460 LNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSA-RGPNLIDPAILKPDVIAPGVDIIAA 538 (781)
Q Consensus 460 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs-~Gp~~~~~~~~KPDI~APG~~I~sa 538 (781)
.........|++ .|+.. ...+||||+|||++|+++
T Consensus 186 ------------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~ 221 (295)
T cd07474 186 ------------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMST 221 (295)
T ss_pred ------------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEee
Confidence 000123334444 45555 788999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCC
Q 047013 539 FTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATP 618 (781)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 618 (781)
+.... ..|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. ..+++
T Consensus 222 ~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~ 282 (295)
T cd07474 222 APGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPV 282 (295)
T ss_pred ccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCCh
Confidence 87631 278999999999999999999999999999999999999999998754321 12345
Q ss_pred CcccCCccccccc
Q 047013 619 FAYGAGHVNPNSA 631 (781)
Q Consensus 619 ~~~G~G~in~~~A 631 (781)
..+|+|+||+.+|
T Consensus 283 ~~~G~G~l~~~~A 295 (295)
T cd07474 283 SRQGAGRVDALRA 295 (295)
T ss_pred hccCcceeccccC
Confidence 7899999999887
No 12
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-44 Score=380.81 Aligned_cols=245 Identities=29% Similarity=0.389 Sum_probs=196.3
Q ss_pred ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCC-CC
Q 047013 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTT-SI 222 (781)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~ 222 (781)
||+||||||||+++||+|... ....+.++.+.++|.++ ... ..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~-------------------~~~~~~~i~~~~~~~~~-----------------~~~~~~ 44 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK-------------------HLFKNLRILGEYDFVDN-----------------SNNTNY 44 (261)
T ss_pred CCEEEEEccCCCccCcchhhh-------------------ccccCCceeeeecCccC-----------------CCCCCC
Confidence 799999999999999999522 11123456666666543 112 36
Q ss_pred CCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCC
Q 047013 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLG 302 (781)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG 302 (781)
|..+|||||||||+|+.. +.+.||||+|+|+.+|+....... ......++.|++|+.+.|++|||||||
T Consensus 45 ~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~-~~~~~~~~~ai~~a~~~~v~VIn~S~G 113 (261)
T cd07493 45 TDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASET-PVEEDNWVAAAEWADSLGVDIISSSLG 113 (261)
T ss_pred CCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcc-cccHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 788999999999999852 235899999999999987543311 245667899999999999999999999
Q ss_pred CCCCCCC------------CChHHHHHHHHHhCCCEEEEecCCCCCCC---CCccCCCCceEEecccCCceeeeeeEEeC
Q 047013 303 SKPKEHF------------ESSVAVGSFHAMMHGILVVASAGNSGPAE---KTVDNVPPWVLTVGASTTDREFSSYVTLG 367 (781)
Q Consensus 303 ~~~~~~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~p~vitVgA~~~d~~~~~~~~~~ 367 (781)
....... ...+..++..+.++|+++|+||||+|... ..++...+++|+|||.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~----------- 182 (261)
T cd07493 114 YTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA----------- 182 (261)
T ss_pred cCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc-----------
Confidence 8732111 13467788889999999999999999763 345556789999998432
Q ss_pred CceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEE
Q 047013 368 NKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGM 447 (781)
Q Consensus 368 ~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~ 447 (781)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCe
Q 047013 448 ILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPD 527 (781)
Q Consensus 448 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 527 (781)
.+.++.||++||+. ++++|||
T Consensus 183 ---------------------------------------------------------~~~~~~~S~~G~~~--~~~~~pd 203 (261)
T cd07493 183 ---------------------------------------------------------NGNKASFSSIGPTA--DGRLKPD 203 (261)
T ss_pred ---------------------------------------------------------CCCCCccCCcCCCC--CCCcCCc
Confidence 14678899999988 8999999
Q ss_pred eeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 528 VIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 528 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
|+|||.+|++....+ .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 204 i~a~G~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 204 VMALGTGIYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eEecCCCeEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999855442 7899999999999999999999999999999999999999984
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.2e-44 Score=380.69 Aligned_cols=247 Identities=30% Similarity=0.386 Sum_probs=194.7
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
|+||+|||||+|||++||+|.+. |.+.... . +...++..+.. .....+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~----------~------~~~~~~~~d~~--------~~~~~~ 48 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG----------S------ADHDYNWFDPV--------GNTPLP 48 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC----------C------cccccccccCC--------CCCCCC
Confidence 89999999999999999999864 1110000 0 00000000000 001245
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh----------
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH---------- 291 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~---------- 291 (781)
.|..+|||||||||+|.... +...||||+|+|+.+|+++... +...+++++++|+++
T Consensus 49 ~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (264)
T cd07481 49 YDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG----GNDADYLRCAQWMLAPTDSAGNPAD 115 (264)
T ss_pred CCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC----CcHHHHHHHHHHHHhcccccccccc
Confidence 67889999999999987522 2237999999999999998765 778899999999875
Q ss_pred --cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC---ccCCCCceEEecccCCceeeeeeEEe
Q 047013 292 --DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT---VDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 292 --~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
.+++|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+|||++.+
T Consensus 116 ~~~~~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 184 (264)
T cd07481 116 PDLAPDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------- 184 (264)
T ss_pred cccCCeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------
Confidence 789999999998732 24456667778889999999999999865433 44567899999984322
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKP 526 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (781)
+.++.||++||.. .+++||
T Consensus 185 -----------------------------------------------------------~~~~~~S~~g~~~--~~~~~~ 203 (264)
T cd07481 185 -----------------------------------------------------------DVLADFSSRGPST--YGRIKP 203 (264)
T ss_pred -----------------------------------------------------------CCCccccCCCCCC--CCCcCc
Confidence 4778999999998 799999
Q ss_pred eeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 047013 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD--WSPAAIKSAIMTTAT 598 (781)
Q Consensus 527 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--lt~~~ik~~L~~TA~ 598 (781)
||+|||.+|+++.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 204 dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 204 DISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999999998764 7899999999999999999999999999 999999999999985
No 14
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-45 Score=377.04 Aligned_cols=333 Identities=24% Similarity=0.366 Sum_probs=257.6
Q ss_pred ccCCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhcc------------------ccEEEEec---ccee
Q 047013 24 FTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAA------------------GLIFHSYG---RYIN 82 (781)
Q Consensus 24 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------~~i~~~y~---~~~~ 82 (781)
.....+|||.|++... +...+.|.++++.......... ..+.+.|. .+|+
T Consensus 77 ~~~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~ 147 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFR 147 (501)
T ss_pred cccccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhh
Confidence 4567899999996554 3666777777777654322100 01333343 3788
Q ss_pred eEEEEeCHHHHHHHhcCCCeEEEEEcceeccc--------ccCCccccCcccCCCC----CCccccccCCCCCceEEEEe
Q 047013 83 GFGAVLEEEHAKQIARHPEVVSVFLEEGIDLH--------TTRSWEFLGLEKDNQI----PPDSAWNKARFGEDVIIGNL 150 (781)
Q Consensus 83 g~s~~l~~~~i~~L~~~~~V~~V~~~~~~~~~--------~~~s~~~~g~~~~~~~----~~~~~w~~~~~G~gv~VaVI 150 (781)
|....++.+-+..++++|-++.++++..++.. +..+|.+..+....+. ....+++ -..|+||...|+
T Consensus 148 ~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~ 226 (501)
T KOG1153|consen 148 GYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVL 226 (501)
T ss_pred ccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEe
Confidence 88889999999999999999999998777543 3334443333322110 1012222 238999999999
Q ss_pred cCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCcccc
Q 047013 151 DSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTH 230 (781)
Q Consensus 151 DtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGTh 230 (781)
||||+.+||+|.++ +.|- .|-. | .....|++|||||
T Consensus 227 DTGVni~H~dFegR------a~wG-a~i~-----------------------------------~--~~~~~D~nGHGTH 262 (501)
T KOG1153|consen 227 DTGVNIEHPDFEGR------AIWG-ATIP-----------------------------------P--KDGDEDCNGHGTH 262 (501)
T ss_pred cccccccccccccc------eecc-cccC-----------------------------------C--CCcccccCCCcce
Confidence 99999999999876 1221 1100 0 1145789999999
Q ss_pred ccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc---------CCcEEEecC
Q 047013 231 TLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD---------GVDIISASL 301 (781)
Q Consensus 231 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~---------g~dVIN~Sl 301 (781)
|||+|+++. .|||.+++|+++||++++| .+..+++++++|++++. +..|.|||+
T Consensus 263 ~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dG---sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSl 325 (501)
T KOG1153|consen 263 VAGLIGSKT--------------FGVAKNSNLVAVKVLRSDG---SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSL 325 (501)
T ss_pred eeeeeeccc--------------cccccccceEEEEEeccCC---cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEec
Confidence 999999986 6889999999999999998 69999999999999976 579999999
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccC-CCCceEEecccCCceeeeeeEEeCCceEEeeeeeecc
Q 047013 302 GSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDN-VPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEK 380 (781)
Q Consensus 302 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~-~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~ 380 (781)
|+. ..-.+..|++.|.+.||.+++||||+..+.|..+. .+..+|||||++..
T Consensus 326 Gg~----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~----------------------- 378 (501)
T KOG1153|consen 326 GGF----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN----------------------- 378 (501)
T ss_pred CCc----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------------------
Confidence 997 34568889999999999999999999988776664 67899999996532
Q ss_pred CCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccc
Q 047013 381 GSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISL 460 (781)
Q Consensus 381 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 460 (781)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeec
Q 047013 461 NMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT 540 (781)
Q Consensus 461 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 540 (781)
+.+|.||+||+|+ ||.|||++|+|+|.
T Consensus 379 ---------------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~i 405 (501)
T KOG1153|consen 379 ---------------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWI 405 (501)
T ss_pred ---------------------------------------------cchhhhcCcccee--------eeecCchhhhhhhh
Confidence 6899999999999 99999999999999
Q ss_pred CCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 047013 541 NEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD---------WSPAAIKSAIMTTAT 598 (781)
Q Consensus 541 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------lt~~~ik~~L~~TA~ 598 (781)
+... ....+||||||+|||||++|..+.++|. .++.++|..++.-..
T Consensus 406 Gs~~-----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 406 GSNN-----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred cCcc-----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 8643 6788999999999999999999999883 378888888776654
No 15
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.9e-44 Score=383.40 Aligned_cols=270 Identities=22% Similarity=0.292 Sum_probs=189.3
Q ss_pred CceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccC---CC-CCccccCceeeeeEeccchhhhhh----ccCCCC--C
Q 047013 143 EDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQN---DT-NKAITCNRKLIGIRYISEGLIESC----RAMNSS--F 212 (781)
Q Consensus 143 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~---~~-~~~~~~n~ki~g~~~~~~~~~~~~----~~~~~~--~ 212 (781)
|+|+|||||||||++||+|++. .|....+. +- .+....-.+ +++++|...++... .+.+.. .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd-~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDD-VNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCcccc-ccCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999875 23221111 00 111111112 23333432211100 000000 0
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
..+.+...+.+..+|||||||||+|...++. .+.||||+|+|+.+|++.... ....++++||+||++.
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~~g~----~~~~~i~~Ai~~a~~~ 140 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVPNGD----ERDKDIANAIRYAVDN 140 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEecCCC----cCHHHHHHHHHHHHHC
Confidence 0001122445789999999999999864321 248999999999999986433 6678899999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC---cc--------CCCCceEEecccCCceeee
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT---VD--------NVPPWVLTVGASTTDREFS 361 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVgA~~~d~~~~ 361 (781)
|++|||||||.... .....+..++..+.++|+++|+||||+|..... ++ ...+++|+|||++...
T Consensus 141 g~~IiN~S~G~~~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--- 216 (291)
T cd07483 141 GAKVINMSFGKSFS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--- 216 (291)
T ss_pred CCcEEEeCCCCCCC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---
Confidence 99999999997632 223456778888999999999999999854221 11 1235677777643221
Q ss_pred eeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHh
Q 047013 362 SYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQ 441 (781)
Q Consensus 362 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 441 (781)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCC
Q 047013 442 AGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDP 521 (781)
Q Consensus 442 ~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 521 (781)
....++.||++|+.
T Consensus 217 --------------------------------------------------------------~~~~~~~~Sn~G~~---- 230 (291)
T cd07483 217 --------------------------------------------------------------ENNLVANFSNYGKK---- 230 (291)
T ss_pred --------------------------------------------------------------CcccccccCCCCCC----
Confidence 01257889999973
Q ss_pred CCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 522 AILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 522 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
+|||.|||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ---~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ---NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 349999999999997764 7999999999999999999999999999999999999999984
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.1e-44 Score=379.52 Aligned_cols=264 Identities=26% Similarity=0.341 Sum_probs=203.4
Q ss_pred cccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCc
Q 047013 134 SAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFL 213 (781)
Q Consensus 134 ~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (781)
++|..+++|+||+|+|||||||++||+|.+..... +...+...+...... .
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~------------------------~~~~~~~~~~~~~~~-~---- 51 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD------------------------GYDPAVNGYNFVPNV-G---- 51 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC------------------------CcccccCCccccccc-C----
Confidence 47999999999999999999999999998751100 000000110000000 0
Q ss_pred cCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcC
Q 047013 214 VPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDG 293 (781)
Q Consensus 214 ~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 293 (781)
+......|..||||||||||+|...+.....|+. .+.|+||+|+|+.+|++.... .+....++++|+|+++.|
T Consensus 52 --~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~g 124 (273)
T cd07485 52 --DIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRY---YVGDDAVAAAIVYAADNG 124 (273)
T ss_pred --CcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHcC
Confidence 0012456778999999999999864432222221 346799999999999998765 478889999999999999
Q ss_pred CcEEEecCCCCCCCCCCChHHHHHHHHHhC-------CCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEe
Q 047013 294 VDIISASLGSKPKEHFESSVAVGSFHAMMH-------GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 294 ~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
++|||||||......+...+..++..+.++ |+++|+||||++......+...+++|+||+++.+
T Consensus 125 ~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~--------- 195 (273)
T cd07485 125 AVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN--------- 195 (273)
T ss_pred CcEEEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC---------
Confidence 999999999874334556677788888888 9999999999998777667778999999985422
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKP 526 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (781)
+.++.||++|+..
T Consensus 196 -----------------------------------------------------------~~~~~~S~~g~~~-------- 208 (273)
T cd07485 196 -----------------------------------------------------------DNKASFSNYGRWV-------- 208 (273)
T ss_pred -----------------------------------------------------------CCcCccccCCCce--------
Confidence 4677899999987
Q ss_pred eeeeCCC-cEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 047013 527 DVIAPGV-DIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD-WSPAAIKSAIMTT 596 (781)
Q Consensus 527 DI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-lt~~~ik~~L~~T 596 (781)
||+|||. .|+++.+.... .....|..++|||||||+|||++|||+|++|. ++++|||++|++|
T Consensus 209 ~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 89888765311 11237899999999999999999999999999 9999999999986
No 17
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.2e-43 Score=383.99 Aligned_cols=223 Identities=25% Similarity=0.337 Sum_probs=168.0
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecC
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASL 301 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~Sl 301 (781)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++... +..+....+++||++|++.|++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~-gs~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRL-GSMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCC-CCccchHHHHHHHHHHHHcCCCEEEecC
Confidence 478899999999999985332 3358999999999999986543 1123446799999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHH-HHhCCCEEEEecCCCCCCCCCccC---CCCceEEecccCCceeeeeeEEeCCceEEeeeee
Q 047013 302 GSKPKEHFESSVAVGSFH-AMMHGILVVASAGNSGPAEKTVDN---VPPWVLTVGASTTDREFSSYVTLGNKMVIKGASI 377 (781)
Q Consensus 302 G~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~ 377 (781)
|..........+..++.+ +.++||++|+||||+|+..+++.. ..+++|+|||+.....+...
T Consensus 253 G~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 253 GEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred CcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 987421112234444444 457999999999999987776543 36899999995322100000
Q ss_pred eccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcc
Q 047013 378 AEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQN 457 (781)
Q Consensus 378 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 457 (781)
+.+
T Consensus 319 ----------y~~------------------------------------------------------------------- 321 (412)
T cd04857 319 ----------YSL------------------------------------------------------------------- 321 (412)
T ss_pred ----------ccc-------------------------------------------------------------------
Confidence 000
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEe
Q 047013 458 ISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIA 537 (781)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (781)
.....+.++.||||||+. ++++||||+|||+.|.+
T Consensus 322 -------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s 356 (412)
T cd04857 322 -------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIAS 356 (412)
T ss_pred -------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEE
Confidence 000135789999999998 99999999999999987
Q ss_pred eecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccC
Q 047013 538 AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----LHPDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~TA~~~ 600 (781)
.-.... ..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 357 ~p~~~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 357 VPNWTL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred cccCCC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 532211 2789999999999999999999985 478999999999999999763
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-43 Score=370.90 Aligned_cols=257 Identities=33% Similarity=0.458 Sum_probs=204.5
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
|+||+|+|||+|||++||+|.+.... ...+.... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~--------------------------~~~~~~~~--------------~~~~~~ 40 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR--------------------------FADFVNTV--------------NGRTTP 40 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc--------------------------cccccccc--------------cCCCCC
Confidence 89999999999999999999864110 00111000 012355
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc----CCcEE
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD----GVDII 297 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~----g~dVI 297 (781)
.|..+|||||||+|+|...+. ...+.||||+|+|+.+|+++..+ .....++++||+|+++. +++||
T Consensus 41 ~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~~~~~~~~~~~Ii 110 (264)
T cd07487 41 YDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSG---SGSESDIIAGIDWVVENNEKYNIRVV 110 (264)
T ss_pred CCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCC---CccHHHHHHHHHHHHhhccccCceEE
Confidence 677899999999999986431 23458999999999999998776 46788999999999998 99999
Q ss_pred EecCCCCCC-CCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC--CccCCCCceEEecccCCceeeeeeEEeCCceEEee
Q 047013 298 SASLGSKPK-EHFESSVAVGSFHAMMHGILVVASAGNSGPAEK--TVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKG 374 (781)
Q Consensus 298 N~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g 374 (781)
|||||.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 111 n~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------- 175 (264)
T cd07487 111 NLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------- 175 (264)
T ss_pred EeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------
Confidence 999998742 346677888999999999999999999997765 44456789999999654320
Q ss_pred eeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCC
Q 047013 375 ASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 375 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCc
Q 047013 455 DQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVD 534 (781)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (781)
....++.||++||+. ++++||||+|||++
T Consensus 176 -------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~ 204 (264)
T cd07487 176 -------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGEN 204 (264)
T ss_pred -------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccc
Confidence 002478899999998 89999999999999
Q ss_pred EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 535 IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
|+++.+.... ........|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 205 i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 205 IVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9998654311 11122347899999999999999999999999999999999999999984
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.4e-42 Score=363.52 Aligned_cols=233 Identities=34% Similarity=0.468 Sum_probs=196.0
Q ss_pred ccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCcc
Q 047013 135 AWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLV 214 (781)
Q Consensus 135 ~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (781)
+|..+++|+||+|||||+||+++||+|.++ +...+.+.+.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~-------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG-------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC--------------
Confidence 777889999999999999999999999753 1222222211
Q ss_pred CCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc--
Q 047013 215 PENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD-- 292 (781)
Q Consensus 215 p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~-- 292 (781)
....|..+|||||||||+|+. .||||+|+|+.+|+++..+ ....+.++++++|+++.
T Consensus 57 ----~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~---~~~~~~~~~ai~~~~~~~~ 115 (255)
T cd04077 57 ----DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNG---SGTLSGIIAGLEWVANDAT 115 (255)
T ss_pred ----CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHhccc
Confidence 125678899999999999874 6999999999999998775 47788999999999986
Q ss_pred ---CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC-CCccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 293 ---GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE-KTVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 293 ---g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
+++|||||||... ...+..++.++.++|+++|+||||+|... ...+...+++|+|||++.+
T Consensus 116 ~~~~~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------- 180 (255)
T cd04077 116 KRGKPAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------- 180 (255)
T ss_pred ccCCCeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------
Confidence 4899999999873 45677888889999999999999999765 3445577999999985432
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
+.++.||++||+. ||
T Consensus 181 ---------------------------------------------------------~~~~~~S~~g~~~--------~i 195 (255)
T cd04077 181 ---------------------------------------------------------DARASFSNYGSCV--------DI 195 (255)
T ss_pred ---------------------------------------------------------CCccCcccCCCCC--------cE
Confidence 3578899999988 99
Q ss_pred eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 047013 529 IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~ 599 (781)
+|||.+|.++..... ..|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 196 ~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 196 FAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999999999887422 279999999999999999999999999999999999999999964
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=2.5e-42 Score=362.82 Aligned_cols=241 Identities=31% Similarity=0.414 Sum_probs=202.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+ +|+||+|+|||+||+++||+|... ++...+.+.++
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC------------
Confidence 4789988 999999999999999999998432 12222223221
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|..+|||||||||++...+. ..+.|+||+|+|+.+|+++..+ .+...+++++|+++++.
T Consensus 61 -----~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~ 124 (260)
T cd07484 61 -----DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANG---SGSLADIANGIRYAADK 124 (260)
T ss_pred -----CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHC
Confidence 1235678899999999999875332 2358999999999999998765 47888999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
|++|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+++.+
T Consensus 125 ~~~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------- 186 (260)
T cd07484 125 GAKVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD--------------- 186 (260)
T ss_pred CCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC---------------
Confidence 9999999999873 4456777888889999999999999998878888888999999984422
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
+.++.||++|+.. |++|||
T Consensus 187 -----------------------------------------------------~~~~~~s~~g~~~--------~~~apG 205 (260)
T cd07484 187 -----------------------------------------------------DKRASFSNYGKWV--------DVSAPG 205 (260)
T ss_pred -----------------------------------------------------CCcCCcCCCCCCc--------eEEeCC
Confidence 4677899999887 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~ 600 (781)
.+|+++.+.. .|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 206 ~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 206 GGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 9999987663 799999999999999999999999999 99999999999999875
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-42 Score=371.51 Aligned_cols=266 Identities=24% Similarity=0.222 Sum_probs=188.5
Q ss_pred EEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCC
Q 047013 146 IIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHN 225 (781)
Q Consensus 146 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~ 225 (781)
+|||||||||.+||+|.+. +.....+... .....|..
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~~-----------------~~~~~d~~ 38 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSDE-----------------PGWTADDL 38 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hccccccccC-----------------CCCcCCCC
Confidence 7999999999999999753 1111111100 01156889
Q ss_pred CccccccccccccccccccccccCCccccccCCCceEeecccccCCC-CCCCCChHHHHHHHHHhhhcC---CcEEEecC
Q 047013 226 GHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN-GANLCNAADIIAGFDVAIHDG---VDIISASL 301 (781)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~~~~~i~~ai~~a~~~g---~dVIN~Sl 301 (781)
||||||||||++.... .....|+||+|+|+.+|++...+ .....+..++++||+|+++.+ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 9999999999976432 12347999999999999998764 111356788999999999753 59999999
Q ss_pred CCCCCCCC--CChHHHHHHH-HHhCCCEEEEecCCCCCCCCCc------------cCCCCceEEecccCCceeeeeeEEe
Q 047013 302 GSKPKEHF--ESSVAVGSFH-AMMHGILVVASAGNSGPAEKTV------------DNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 302 G~~~~~~~--~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~------------~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
|....... ...+..++.+ +.++|++||+||||+|...... +...+++|+|||++.+.........
T Consensus 111 G~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~ 190 (291)
T cd04847 111 GSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY 190 (291)
T ss_pred CCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc
Confidence 99742211 1245555544 5689999999999999765432 3356799999997654310000000
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKP 526 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (781)
+.......+.||++||.. ++.+||
T Consensus 191 ------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KP 214 (291)
T cd04847 191 ------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKP 214 (291)
T ss_pred ------------------------------------------------------cccccccCCCccccCCCC--CCCcCC
Confidence 000012234499999998 999999
Q ss_pred eeeeCCCcEEeeecCCCCCC-----CCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 527 DVIAPGVDIIAAFTNEYGPS-----HEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 527 DI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
||+|||++|.+......... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 215 Dl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 215 DVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred cEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999988654211000 0001122347999999999999999999999999999999999999999984
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-42 Score=361.05 Aligned_cols=253 Identities=32% Similarity=0.403 Sum_probs=188.0
Q ss_pred ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCC
Q 047013 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSID 223 (781)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 223 (781)
||+|||||+|||++||+|.+. +.....|..+.. .......|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~~-------------~~~~~~~d 41 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENRR-------------ISATEVFD 41 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCCC-------------CCCCCCCC
Confidence 799999999999999999753 111122221100 01224567
Q ss_pred CCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCC
Q 047013 224 HNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGS 303 (781)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~ 303 (781)
..+|||||||||+|+.. ++...||||+|+|+.+|++...+ +...+++++|+|+++.+++|||||||.
T Consensus 42 ~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~----~~~~~~~~ai~~a~~~~~~Vin~S~g~ 108 (254)
T cd07490 42 AGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG----GSLSQIIAGMEWAVEKDADVVSMSLGG 108 (254)
T ss_pred CCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC----CcHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 88999999999999863 22347999999999999998764 778999999999999999999999998
Q ss_pred CCCCCCCChHHHHHHHHHh-CCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCC
Q 047013 304 KPKEHFESSVAVGSFHAMM-HGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGS 382 (781)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (781)
.... ...+..++....+ +|++||+||||+|......+...+++|+|||++.+........
T Consensus 109 ~~~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~----------------- 169 (254)
T cd07490 109 TYYS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS----------------- 169 (254)
T ss_pred CCCC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-----------------
Confidence 7432 5566666665554 6999999999999876667777899999999654421000000
Q ss_pred CCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccc
Q 047013 383 LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNM 462 (781)
Q Consensus 383 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 462 (781)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCC
Q 047013 463 VHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542 (781)
Q Consensus 463 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 542 (781)
........++.+|.. .....||||.|||.+|+++....
T Consensus 170 -----------------------------------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~ 207 (254)
T cd07490 170 -----------------------------------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA 207 (254)
T ss_pred -----------------------------------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC
Confidence 000122223334433 25568999999999999865321
Q ss_pred CCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 543 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
. ....|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 208 ~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 N---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred C---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1 1237999999999999999999999999999999999999999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-42 Score=365.50 Aligned_cols=207 Identities=29% Similarity=0.396 Sum_probs=168.6
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh---------
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI--------- 290 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~--------- 290 (781)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~----~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCG----GTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCC----CcHHHHHHHHHHHhccCcCCCcc
Confidence 45677899999999999986422 2348999999999999998776 57889999999998
Q ss_pred -hcCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC-CCccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 291 -HDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE-KTVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 291 -~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
.++++|||||||.... ....+..++..+.++|++||+||||++... ..++...+++|+|||++.+
T Consensus 134 ~~~~~~Iin~S~G~~~~--~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 200 (285)
T cd07496 134 NPNPAKVINLSLGGDGA--CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------- 200 (285)
T ss_pred cCCCCeEEEeCCCCCCC--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------
Confidence 4578999999998732 145678888899999999999999999765 4556677899999985432
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
+.++.||++|+.. ||
T Consensus 201 ---------------------------------------------------------~~~~~~S~~g~~v--------di 215 (285)
T cd07496 201 ---------------------------------------------------------GQRASYSNYGPAV--------DV 215 (285)
T ss_pred ---------------------------------------------------------CCcccccCCCCCC--------CE
Confidence 4678899999988 99
Q ss_pred eeCCCcEEeeecCCCCCC--CCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 529 IAPGVDIIAAFTNEYGPS--HEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
.|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 216 ~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 216 SAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999998876532110 00111223478999999999999999999999999999999999999976
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2e-41 Score=362.69 Aligned_cols=279 Identities=30% Similarity=0.342 Sum_probs=201.3
Q ss_pred cCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCC
Q 047013 138 KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPEN 217 (781)
Q Consensus 138 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~ 217 (781)
++++|+||+|||||||||++||+|.+.... . ....++++.....+.+
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~--------~-------~~~~~~~~~~~~~~~~------------------ 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN--------K-------TNLFHRKIVRYDSLSD------------------ 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC--------c-------CccCcccEEEeeccCC------------------
Confidence 588999999999999999999999764210 0 0112233333222211
Q ss_pred CCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEE
Q 047013 218 LTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDII 297 (781)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVI 297 (781)
...|..+|||||||||+|...+... ...+.||||+|+|+.+|+++..+. ......+..+++++.+.+++||
T Consensus 49 --~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vi 119 (293)
T cd04842 49 --TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGN--LSSPPDLNKLFSPMYDAGARIS 119 (293)
T ss_pred --CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCcc--ccCCccHHHHHHHHHHhCCEEE
Confidence 2227899999999999998644321 114589999999999999886642 3566778999999999999999
Q ss_pred EecCCCCCCCCCCChHHHHHHHHH-h-CCCEEEEecCCCCCCCC---CccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 298 SASLGSKPKEHFESSVAVGSFHAM-M-HGILVVASAGNSGPAEK---TVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 298 N~SlG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
|||||..... .......++.++. + +|++||+||||+|.... ..+...+++|+|||++.+....
T Consensus 120 n~S~G~~~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~----------- 187 (293)
T cd04842 120 SNSWGSPVNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN----------- 187 (293)
T ss_pred eccCCCCCcc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc-----------
Confidence 9999998432 1233444444443 3 89999999999997665 4556789999999976543100
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
...|..
T Consensus 188 ---------------------------------~~~~~~----------------------------------------- 193 (293)
T cd04842 188 ---------------------------------GEGGLG----------------------------------------- 193 (293)
T ss_pred ---------------------------------cccccc-----------------------------------------
Confidence 000000
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
.......++.||++||+. ++++||||+|||
T Consensus 194 ------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG 223 (293)
T cd04842 194 ------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPG 223 (293)
T ss_pred ------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCC
Confidence 001135789999999998 899999999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH-----P---DWSPAAIKSAIMTTAT 598 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~lt~~~ik~~L~~TA~ 598 (781)
++|+++...... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 224 ~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 224 TGILSARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCeEeccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999754200 011122378999999999999999999999985 4 6667799999999984
No 25
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-41 Score=361.03 Aligned_cols=248 Identities=27% Similarity=0.342 Sum_probs=182.0
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|+.+++|+||+||||||||+..|| |..+++. + + ..+..+
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~--------------~----~~~~~~------------ 52 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V--------------R----VVLAPG------------ 52 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c--------------e----eecCCC------------
Confidence 589999999999999999999999998 7643110 0 0 001000
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
......|+.||||||||++ .||||+|+|+.+|+++. ..+.+++||+||+++
T Consensus 53 ----~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-------~~~~~~~ai~~a~~~ 103 (298)
T cd07494 53 ----ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-------DLVNSVGAFKKAISL 103 (298)
T ss_pred ----CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC-------CcHHHHHHHHHHHhc
Confidence 0124567889999999875 47899999999999863 456789999999999
Q ss_pred CCcEEEecCCCCCCCC----------CCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeee
Q 047013 293 GVDIISASLGSKPKEH----------FESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSS 362 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~ 362 (781)
+++|||||||...... ....+..++..|.++|++||+||||++. .+++..|++|+|||++.+..
T Consensus 104 g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--- 177 (298)
T cd07494 104 SPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--- 177 (298)
T ss_pred CCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---
Confidence 9999999999863111 1234777888899999999999999874 46778899999999644320
Q ss_pred eEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhc
Q 047013 363 YVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQA 442 (781)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 442 (781)
T Consensus 178 -------------------------------------------------------------------------------- 177 (298)
T cd07494 178 -------------------------------------------------------------------------------- 177 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccC--CCCCCCC
Q 047013 443 GAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSA--RGPNLID 520 (781)
Q Consensus 443 Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs--~Gp~~~~ 520 (781)
......+++ +... ..
T Consensus 178 --------------------------------------------------------------g~~~~~~~~~~~~s~-~~ 194 (298)
T cd07494 178 --------------------------------------------------------------GARRASSYASGFRSK-IY 194 (298)
T ss_pred --------------------------------------------------------------CcccccccccCcccc-cC
Confidence 000011111 1111 12
Q ss_pred CCCccCee----------------eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCC
Q 047013 521 PAILKPDV----------------IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDW 584 (781)
Q Consensus 521 ~~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l 584 (781)
+++.|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|
T Consensus 195 ~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~ 269 (298)
T cd07494 195 PGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGL 269 (298)
T ss_pred CCCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCC
Confidence 56777877 4799998765532100 00112379999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccCC
Q 047013 585 SPAAIKSAIMTTATTED 601 (781)
Q Consensus 585 t~~~ik~~L~~TA~~~~ 601 (781)
++++||.+|++||+++.
T Consensus 270 ~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 270 SPERARSLLNKTARDVT 286 (298)
T ss_pred CHHHHHHHHHHhCcccC
Confidence 99999999999998764
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-41 Score=362.39 Aligned_cols=265 Identities=29% Similarity=0.329 Sum_probs=184.9
Q ss_pred ccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCC
Q 047013 137 NKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPE 216 (781)
Q Consensus 137 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~ 216 (781)
..+++|+||+|||||+|||++||+|.+.. +....|.+.
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~--------------------------~~~~~~~~~---------------- 39 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD--------------------------ITTKSFVGG---------------- 39 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc--------------------------ccCcccCCC----------------
Confidence 35789999999999999999999998641 111112111
Q ss_pred CCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcE
Q 047013 217 NLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDI 296 (781)
Q Consensus 217 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dV 296 (781)
....|..||||||||||+|+..+ +...||||+|+|+.+|++.... .+....+++||+|+++.|++|
T Consensus 40 --~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~g~~V 105 (297)
T cd07480 40 --EDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDG---GGGDGGILAGIQWAVANGADV 105 (297)
T ss_pred --CCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCC---CCcHHHHHHHHHHHHHcCCCE
Confidence 12467899999999999998633 2347999999999999987665 467778999999999999999
Q ss_pred EEecCCCCCCCC----------CCChHHHHHHHH---------------HhCCCEEEEecCCCCCCCCCccC-----CCC
Q 047013 297 ISASLGSKPKEH----------FESSVAVGSFHA---------------MMHGILVVASAGNSGPAEKTVDN-----VPP 346 (781)
Q Consensus 297 IN~SlG~~~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~~-----~~p 346 (781)
||||||...... ....+......+ .++|++||+||||+|........ ..+
T Consensus 106 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~ 185 (297)
T cd07480 106 ISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACP 185 (297)
T ss_pred EEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccc
Confidence 999999863111 111222222333 67999999999999864332211 112
Q ss_pred ceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEE
Q 047013 347 WVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILIC 426 (781)
Q Consensus 347 ~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~ 426 (781)
++++|+++...
T Consensus 186 ~~~~V~~V~~~--------------------------------------------------------------------- 196 (297)
T cd07480 186 SAMGVAAVGAL--------------------------------------------------------------------- 196 (297)
T ss_pred cccEEEEECCC---------------------------------------------------------------------
Confidence 33333332111
Q ss_pred ecCCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCC
Q 047013 427 YDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSR 506 (781)
Q Consensus 427 ~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 506 (781)
+
T Consensus 197 -------------------------------------------------------------------------------~ 197 (297)
T cd07480 197 -------------------------------------------------------------------------------G 197 (297)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred ccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCH
Q 047013 507 MTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586 (781)
Q Consensus 507 ~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~ 586 (781)
....|+++.+ ....||||+|||.+|+++...+ .|..++|||||||+|||++|||+|++|.+++
T Consensus 198 ~~~~~~~~~~----~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~ 260 (297)
T cd07480 198 RTGNFSAVAN----FSNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGG 260 (297)
T ss_pred CCCCccccCC----CCCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCH
Confidence 2222333322 2235789999999999988764 8999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCccccc
Q 047013 587 AAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPN 629 (781)
Q Consensus 587 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~ 629 (781)
.+++.+|+......... ..........+|+|++++.
T Consensus 261 ~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 261 RALAALLQARLTAARTT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHHHHhhcccC-------CCCCCCChhhcCCceeecC
Confidence 88888877432221000 1122345568999999875
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-41 Score=353.42 Aligned_cols=240 Identities=26% Similarity=0.345 Sum_probs=189.9
Q ss_pred eEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCC
Q 047013 145 VIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDH 224 (781)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 224 (781)
|+|||||+|||++||+|++.. ++...+.+... .....|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~------------------------~~~~~~~~~~~-----------------~~~~~~~ 39 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP------------------------KLVPGWNFVSN-----------------NDPTSDI 39 (242)
T ss_pred CEEEEecCCCCCCChhhccCc------------------------CccCCccccCC-----------------CCCCCCC
Confidence 689999999999999998630 01111111110 1135678
Q ss_pred CCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCC
Q 047013 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSK 304 (781)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 304 (781)
.+|||||||||+|+..+. ..+.||||+|+|+.+|++...+ .+...++.++++|+++.+++|||||||..
T Consensus 40 ~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Vin~S~g~~ 108 (242)
T cd07498 40 DGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLG---YAYWSDIAQAITWAADNGADVISNSWGGS 108 (242)
T ss_pred CCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHCCCeEEEeccCCC
Confidence 999999999999986322 2358999999999999998765 47889999999999999999999999987
Q ss_pred CC-CCCCChHHHHHHHHHh-CCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCC
Q 047013 305 PK-EHFESSVAVGSFHAMM-HGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGS 382 (781)
Q Consensus 305 ~~-~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (781)
.. ......+..++..+.. +|+++|+||||+|......+...+++|+|||++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------- 163 (242)
T cd07498 109 DSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------- 163 (242)
T ss_pred CCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------
Confidence 32 2234567777778888 99999999999998776667788999999985422
Q ss_pred CCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccc
Q 047013 383 LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNM 462 (781)
Q Consensus 383 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 462 (781)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCC
Q 047013 463 VHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542 (781)
Q Consensus 463 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 542 (781)
+.+++||++||.. |++|||.++.......
T Consensus 164 -------------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~ 192 (242)
T cd07498 164 -------------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGR 192 (242)
T ss_pred -------------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccc
Confidence 4678999999988 9999999998875442
Q ss_pred CCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 543 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
.. ........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 193 ~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 193 GS----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cc----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 11 111223478899999999999999999999999999999999999976
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-41 Score=353.25 Aligned_cols=244 Identities=21% Similarity=0.214 Sum_probs=177.4
Q ss_pred ccccccCC-CCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCC
Q 047013 133 DSAWNKAR-FGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSS 211 (781)
Q Consensus 133 ~~~w~~~~-~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (781)
..+|+... .|+||+|+|||+|||.+||+|.++... ...
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~-----------------------------~~~------------ 43 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT-----------------------------LIS------------ 43 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc-----------------------------ccC------------
Confidence 47898754 599999999999999999999864110 000
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
.....|+.+|||||||||+|..+ -.| +.||||+|+|+.+|+++ .++++++|.+|++
T Consensus 44 ------~~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~---------~~~~~~ai~~A~~ 99 (277)
T cd04843 44 ------GLTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR---------VSNTADAILDAAD 99 (277)
T ss_pred ------CCCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC---------CCCHHHHHHHHHh
Confidence 01245778999999999999741 122 48999999999999975 2245556666665
Q ss_pred ----cCCcEEEecCCCCCCCC------CCChHHHHHHHHHhCCCEEEEecCCCCCCCCCcc-------------CCCCce
Q 047013 292 ----DGVDIISASLGSKPKEH------FESSVAVGSFHAMMHGILVVASAGNSGPAEKTVD-------------NVPPWV 348 (781)
Q Consensus 292 ----~g~dVIN~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~~p~v 348 (781)
.++.+||||||...... ....+..++..+.++|+++|+||||++....... ...+++
T Consensus 100 ~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~v 179 (277)
T cd04843 100 YLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGA 179 (277)
T ss_pred ccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCe
Confidence 45778999999873211 2234556778888999999999999986422111 123568
Q ss_pred EEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEec
Q 047013 349 LTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYD 428 (781)
Q Consensus 349 itVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 428 (781)
|+|||++.+.
T Consensus 180 I~VgA~~~~~---------------------------------------------------------------------- 189 (277)
T cd04843 180 IMVGAGSSTT---------------------------------------------------------------------- 189 (277)
T ss_pred EEEEeccCCC----------------------------------------------------------------------
Confidence 8888754221
Q ss_pred CCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcc
Q 047013 429 AKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMT 508 (781)
Q Consensus 429 g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 508 (781)
...+
T Consensus 190 ----------------------------------------------------------------------------~~~~ 193 (277)
T cd04843 190 ----------------------------------------------------------------------------GHTR 193 (277)
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 1237
Q ss_pred ccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----h-CCC
Q 047013 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----L-HPD 583 (781)
Q Consensus 509 a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~ 583 (781)
+.||++|+.. ||.|||++|+++....... ........|..++|||||||||||++|||++ + +|+
T Consensus 194 ~~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~ 262 (277)
T cd04843 194 LAFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTP 262 (277)
T ss_pred ccccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 8999999987 9999999999998764311 0111112457899999999999999999975 3 499
Q ss_pred CCHHHHHHHHHhccc
Q 047013 584 WSPAAIKSAIMTTAT 598 (781)
Q Consensus 584 lt~~~ik~~L~~TA~ 598 (781)
|+++|||++|+.|++
T Consensus 263 lt~~~v~~~L~~t~~ 277 (277)
T cd04843 263 LTPIEMRELLTATGT 277 (277)
T ss_pred CCHHHHHHHHHhcCC
Confidence 999999999999973
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.1e-40 Score=343.74 Aligned_cols=227 Identities=35% Similarity=0.493 Sum_probs=188.4
Q ss_pred ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCC
Q 047013 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSID 223 (781)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 223 (781)
||+|||||+||+++||+|.+. +...+.|.... .....|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~~----------------~~~~~~ 38 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGDD----------------NNDYQD 38 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCCC----------------CCCCCC
Confidence 799999999999999999753 11222222110 024567
Q ss_pred CCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCC
Q 047013 224 HNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGS 303 (781)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~ 303 (781)
..+|||||||+|++.... ..+.|+||+|+|+.+|+++..+ .+...+++++++++++.|++|||||||.
T Consensus 39 ~~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~---~~~~~~l~~ai~~a~~~~~~Vin~S~g~ 106 (229)
T cd07477 39 GNGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDG---SGTYSDIIAGIEWAIENGMDIINMSLGG 106 (229)
T ss_pred CCCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 889999999999998632 2458999999999999998766 4667899999999999999999999998
Q ss_pred CCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc--cCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccC
Q 047013 304 KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV--DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKG 381 (781)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~ 381 (781)
.. ....+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 107 ~~---~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 107 PS---DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred CC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 63 334567777888999999999999999776554 6678999999985432
Q ss_pred CCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcccccc
Q 047013 382 SLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLN 461 (781)
Q Consensus 382 ~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 461 (781)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecC
Q 047013 462 MVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTN 541 (781)
Q Consensus 462 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 541 (781)
+.++.||++|+.. |+.|||.+|+++.+.
T Consensus 160 --------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~ 187 (229)
T cd07477 160 --------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN 187 (229)
T ss_pred --------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC
Confidence 4667899999977 999999999999876
Q ss_pred CCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 542 EYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 542 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
+ .|..++|||||||+|||++|||+|++|++++++||++|++|
T Consensus 188 ~-------------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 N-------------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred C-------------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 4 78999999999999999999999999999999999999976
No 30
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-40 Score=347.59 Aligned_cols=250 Identities=30% Similarity=0.397 Sum_probs=191.1
Q ss_pred CceEEEEecCCCCcCCCCccCCCCCCCCCCCccc---ccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCC
Q 047013 143 EDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGT---CQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLT 219 (781)
Q Consensus 143 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~ 219 (781)
+||+|||||||||++||+|.++. |... +..+. ....+. .+.. ..+|+... ...
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~--~~~~~~-~~~~---~~~~~~~~-----------~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGI--DDDGNG-YVDD---IYGWNFVN-----------NDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCc--ccCCCC-cccC---CCcccccC-----------CCC
Confidence 68999999999999999998752 2211 11110 000000 0000 00111110 123
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEe
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISA 299 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~ 299 (781)
+..|..+|||||||||+|...++. .+.||||+|+|+.+|++...+ .++..+++++++++++.+++|||+
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~vin~ 126 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADG---SGTTSDAIKAIDYAVDMGAKIINN 126 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCeEEEe
Confidence 567889999999999999864322 248999999999999998766 488899999999999999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC---CCccC--CCCceEEecccCCceeeeeeEEeCCceEEee
Q 047013 300 SLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE---KTVDN--VPPWVLTVGASTTDREFSSYVTLGNKMVIKG 374 (781)
Q Consensus 300 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g 374 (781)
|||... ....+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 127 S~G~~~---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------- 186 (259)
T cd07473 127 SWGGGG---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------- 186 (259)
T ss_pred CCCCCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------
Confidence 999873 256678888899999999999999998652 23333 34788999984322
Q ss_pred eeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCC
Q 047013 375 ASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 375 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCc
Q 047013 455 DQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVD 534 (781)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (781)
+.++.||++||. +||+.|||.+
T Consensus 187 ---------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~ 208 (259)
T cd07473 187 ---------------------------------------------------DALASFSNYGKK-------TVDLAAPGVD 208 (259)
T ss_pred ---------------------------------------------------CCcCcccCCCCC-------CcEEEeccCC
Confidence 466779999985 3599999999
Q ss_pred EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 535 IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
+++..... .|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 209 ~~~~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 209 ILSTSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred eEeccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99976543 7999999999999999999999999999999999999999984
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-40 Score=342.64 Aligned_cols=161 Identities=22% Similarity=0.229 Sum_probs=120.2
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
+++|+|||||||||++||+|.++ +...+.|....... + ......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~----~------~~~~~~ 45 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDG----N------KVSPYY 45 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCc----c------cCCCCC
Confidence 78999999999999999999853 12222222210000 0 001123
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCC---CCCChHHHHHHHHHhhhcCCcEEE
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGA---NLCNAADIIAGFDVAIHDGVDIIS 298 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~---~~~~~~~i~~ai~~a~~~g~dVIN 298 (781)
.|..||||||||||+ |+||+|+|+.+|+++..+.+ ..++...+++||+||+++|+||||
T Consensus 46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 578899999999995 56999999999999865421 135678899999999999999999
Q ss_pred ecCCCCCCCC---CCChHHHHHHHHHhCCCEEEEecCCCCCCCC-Cc--cCCCCceEEecccCC
Q 047013 299 ASLGSKPKEH---FESSVAVGSFHAMMHGILVVASAGNSGPAEK-TV--DNVPPWVLTVGASTT 356 (781)
Q Consensus 299 ~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~p~vitVgA~~~ 356 (781)
||||.....+ ....+..++.+|.++|++||+||||+|.... .+ +...+++|+|||++.
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 9999873211 2566888899999999999999999997654 33 335689999999543
No 32
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=6.9e-40 Score=351.33 Aligned_cols=249 Identities=19% Similarity=0.217 Sum_probs=181.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|+|||||||+.||+|.++... ...+.|.+... +
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~------~--- 75 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDNDP------D--- 75 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCCC------C---
Confidence 68999999999999999999999999999864110 01111221100 0
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
+ .....|..||||||||||+|+..+.. ...||||+|+|+.+|+++.. .....+..++.++.+
T Consensus 76 --~--~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~~~~~~- 137 (297)
T cd04059 76 --P--TPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-----VTDVVEAESLGLNPD- 137 (297)
T ss_pred --C--CCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-----cccHHHHHHHhcccC-
Confidence 0 00113788999999999999863221 24899999999999998754 233455566665554
Q ss_pred CCcEEEecCCCCCCCC----CCChHHHHHHHHHh-----CCCEEEEecCCCCCCCCC--c--cCCCCceEEecccCCcee
Q 047013 293 GVDIISASLGSKPKEH----FESSVAVGSFHAMM-----HGILVVASAGNSGPAEKT--V--DNVPPWVLTVGASTTDRE 359 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~--~--~~~~p~vitVgA~~~d~~ 359 (781)
.++|||||||...... .......++.++.. +|++||+||||+|..... . ....+++|+|||++.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 4699999999873221 22234445555553 699999999999973222 1 1345889999985432
Q ss_pred eeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHH
Q 047013 360 FSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRA 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 439 (781)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC
Q 047013 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI 519 (781)
Q Consensus 440 ~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (781)
+.++.||++|+..
T Consensus 216 ------------------------------------------------------------------g~~~~~s~~g~~~- 228 (297)
T cd04059 216 ------------------------------------------------------------------GVRASYSEVGSSV- 228 (297)
T ss_pred ------------------------------------------------------------------CCCcCCCCCCCcE-
Confidence 4678899999988
Q ss_pred CCCCccCeeeeCCCc-------EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 047013 520 DPAILKPDVIAPGVD-------IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSA 592 (781)
Q Consensus 520 ~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~ 592 (781)
++.|||.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.|||++
T Consensus 229 -------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~ 291 (297)
T cd04059 229 -------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHI 291 (297)
T ss_pred -------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHH
Confidence 99999987 666654420 126788999999999999999999999999999999999
Q ss_pred HHhccc
Q 047013 593 IMTTAT 598 (781)
Q Consensus 593 L~~TA~ 598 (781)
|++||+
T Consensus 292 L~~TA~ 297 (297)
T cd04059 292 LALTAR 297 (297)
T ss_pred HHHhcC
Confidence 999985
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.3e-40 Score=352.45 Aligned_cols=274 Identities=32% Similarity=0.477 Sum_probs=207.1
Q ss_pred EEEEecCCCCcCCCCcc-CCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCC
Q 047013 146 IIGNLDSGVWPESQSFT-DEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDH 224 (781)
Q Consensus 146 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 224 (781)
+|||||||||++||+|. ++ ....++.+.+.|.++. . ......|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~---------------------~~~~~~~~~~~~~~~~------~--------~~~~~~~~ 45 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN---------------------FIWSKVPGGYNFVDGN------P--------NPSPSDDD 45 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT---------------------EEEEEEEEEEETTTTB------S--------TTTSSSTS
T ss_pred CEEEEcCCcCCCChhHccCC---------------------cccccccceeeccCCC------C--------CcCccccC
Confidence 69999999999999997 32 0112233344444331 0 02356778
Q ss_pred CCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh-hcCCcEEEecCCC
Q 047013 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI-HDGVDIISASLGS 303 (781)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~-~~g~dVIN~SlG~ 303 (781)
.+|||||||||+|.. . .+ .....|+||+|+|+.+|++...+ .....++++|++++ +.+++|||||||.
T Consensus 46 ~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~----~~~~~~~~ai~~~~~~~~~~Vin~S~G~ 114 (282)
T PF00082_consen 46 NGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG----GTSSDLIEAIEYAVKNDGVDVINLSFGS 114 (282)
T ss_dssp SSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS----EEHHHHHHHHHHHHHHTTSSEEEECEEB
T ss_pred CCccchhhhhccccc-c-cc-----ccccccccccccccccccccccc----cccccccchhhhhhhccCCccccccccc
Confidence 899999999999986 2 11 22348999999999999977654 67888999999999 8899999999988
Q ss_pred C--CC-CCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC---ccCCCCceEEecccCCceeeeeeEEeCCceEEeeeee
Q 047013 304 K--PK-EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT---VDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASI 377 (781)
Q Consensus 304 ~--~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~ 377 (781)
. .. ......+..++..+.++|+++|+||||+|..... .+...+++|+||+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~--------------------- 173 (282)
T PF00082_consen 115 NSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN--------------------- 173 (282)
T ss_dssp EESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET---------------------
T ss_pred cccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc---------------------
Confidence 3 11 1222335566678889999999999999876653 3445588899997432
Q ss_pred eccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcc
Q 047013 378 AEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQN 457 (781)
Q Consensus 378 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 457 (781)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEe
Q 047013 458 ISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIA 537 (781)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (781)
.+.++.||++|+.. .++++||||+|||.+|++
T Consensus 174 -----------------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~ 205 (282)
T PF00082_consen 174 -----------------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILS 205 (282)
T ss_dssp -----------------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEE
T ss_pred -----------------------------------------------cccccccccccccc-cccccccccccccccccc
Confidence 13668899997543 278999999999999998
Q ss_pred eecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCC
Q 047013 538 AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKAT 617 (781)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 617 (781)
.++.... ..|..++|||||||+|||++|||+|++|+|++++||.+|++||+++...+ ....
T Consensus 206 ~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~ 266 (282)
T PF00082_consen 206 AVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGY 266 (282)
T ss_dssp EETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSS
T ss_pred ccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCC
Confidence 8876420 25888999999999999999999999999999999999999999875211 2334
Q ss_pred CCcccCCcccccccCC
Q 047013 618 PFAYGAGHVNPNSALD 633 (781)
Q Consensus 618 ~~~~G~G~in~~~Av~ 633 (781)
...||||++|+.+|++
T Consensus 267 ~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 267 DNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHTTSBE-HHHHHH
T ss_pred CCCccCChhCHHHHhC
Confidence 5688999999999874
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-39 Score=331.94 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=174.6
Q ss_pred ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccc-hhhhhhccCCCCCccCCCCCCCC
Q 047013 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISE-GLIESCRAMNSSFLVPENLTTSI 222 (781)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~ 222 (781)
||+|||||||||++||+|++... ..+.+.. .+. .+.....
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~--------------------------~~~~~~~~~~~-------------~~~~~~~ 41 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL--------------------------DGEVTIDLEII-------------VVSAEGG 41 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc--------------------------ccccccccccc-------------cCCCCCC
Confidence 79999999999999999986411 0111100 000 0122456
Q ss_pred CCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCC
Q 047013 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLG 302 (781)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG 302 (781)
|..||||||||||++. +|+++|+.+|+++..+ .+..+.+++||+|++++|++|||||||
T Consensus 42 d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 42 DKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDG---RCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 7899999999999865 6999999999998776 578899999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCC
Q 047013 303 SKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGS 382 (781)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (781)
.... .....+..++.++.++|+++|+||||++.... .+...+++|+||+.+.+.
T Consensus 101 ~~~~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------ 154 (222)
T cd07492 101 GPGD-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------ 154 (222)
T ss_pred CCCC-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC------------------------
Confidence 8742 22345677888888999999999999986543 356678899999743221
Q ss_pred CCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccc
Q 047013 383 LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNM 462 (781)
Q Consensus 383 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 462 (781)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCC
Q 047013 463 VHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542 (781)
Q Consensus 463 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 542 (781)
.. +.+++. +|+.|||.+|+++.+.+
T Consensus 155 --------------------------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~~ 179 (222)
T cd07492 155 --------------------------------------------PK---SFWYIY--------VEFSADGVDIIAPAPHG 179 (222)
T ss_pred --------------------------------------------Cc---ccccCC--------ceEEeCCCCeEeecCCC
Confidence 11 112443 39999999999988763
Q ss_pred CCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 543 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 180 -------------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 -------------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -------------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
No 35
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-39 Score=342.53 Aligned_cols=361 Identities=21% Similarity=0.302 Sum_probs=270.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchh------ccccEEEEeccceeeEEEEeCH-----HHHH
Q 047013 26 AKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEE------AAGLIFHSYGRYINGFGAVLEE-----EHAK 94 (781)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~i~~~y~~~~~g~s~~l~~-----~~i~ 94 (781)
-+.+|||.||..-.+ ..++..+++.+....- .+......|-..|.-+-++-.. -+|+
T Consensus 48 ve~EyIv~F~~y~~A------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ie 115 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKPA------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIE 115 (1033)
T ss_pred ecceeEEEecccccc------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheee
Confidence 457899999998775 4555566665542221 1223334566667666665443 3479
Q ss_pred HHhcCCCeEEEEEcceeccccc------------CCcccc-Cc-------------ccCCC-----------CCCccccc
Q 047013 95 QIARHPEVVSVFLEEGIDLHTT------------RSWEFL-GL-------------EKDNQ-----------IPPDSAWN 137 (781)
Q Consensus 95 ~L~~~~~V~~V~~~~~~~~~~~------------~s~~~~-g~-------------~~~~~-----------~~~~~~w~ 137 (781)
+|..+|+|+.|.|.+.+..-.. ..-.++ |. ....+ -..+.+|+
T Consensus 116 rLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk 195 (1033)
T KOG4266|consen 116 RLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWK 195 (1033)
T ss_pred ehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHh
Confidence 9999999999999877643100 000000 00 00000 01267999
Q ss_pred cCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCC
Q 047013 138 KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPEN 217 (781)
Q Consensus 138 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~ 217 (781)
.|+||++|+|||.|||+.-+||.|+.- .-..++++
T Consensus 196 ~GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWTN------------------ 230 (1033)
T KOG4266|consen 196 KGYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWTN------------------ 230 (1033)
T ss_pred ccccCCceEEEEeecccccCCccccch---------------------------hhhcCCcC------------------
Confidence 999999999999999999999999741 11111111
Q ss_pred CCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEE
Q 047013 218 LTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDII 297 (781)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVI 297 (781)
.....|.-||||.|||+|||.. ...|.||+++|++.|||.+.. -...+.+++|++||+..+.||+
T Consensus 231 E~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q---VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 231 EDTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ---VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred ccccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce---eehhhHHHHHHHHHHhhhcceE
Confidence 1245678899999999999873 347889999999999998876 5789999999999999999999
Q ss_pred EecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCC--CceEEecccCCceeeeeeEEeCCceEEeee
Q 047013 298 SASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP--PWVLTVGASTTDREFSSYVTLGNKMVIKGA 375 (781)
Q Consensus 298 N~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--p~vitVgA~~~d~~~~~~~~~~~~~~~~g~ 375 (781)
|+|+|++ ++.+.|+-.-+......+|++|.|+||+||-.++..+++ ..||.||.
T Consensus 296 NLSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG---------------------- 351 (1033)
T KOG4266|consen 296 NLSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG---------------------- 351 (1033)
T ss_pred eeccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc----------------------
Confidence 9999998 567888877778888999999999999999888877754 35566663
Q ss_pred eeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCC
Q 047013 376 SIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRED 455 (781)
Q Consensus 376 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~ 455 (781)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC----CCCCccCeeeeC
Q 047013 456 QNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI----DPAILKPDVIAP 531 (781)
Q Consensus 456 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~AP 531 (781)
.+..+.++.|||||-+.. ..||+||||++-
T Consensus 352 ----------------------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 352 ----------------------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred ----------------------------------------------ccccchhhhhccCCcceeecCCcccccCCceEee
Confidence 222478999999997652 468999999999
Q ss_pred CCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCcc
Q 047013 532 GVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----LHPDWSPAAIKSAIMTTATTEDSSKHPI 607 (781)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~TA~~~~~~g~~~ 607 (781)
|.+|....... +...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++...
T Consensus 386 G~~v~GS~v~~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVST-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCcccc-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 99998776553 788999999999999999999976 233468999999999999988533
Q ss_pred cccCCCCCCCCCcccCCcccccccCCC
Q 047013 608 LDQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
.-++||+|++|+.++++-
T Consensus 449 ---------NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 449 ---------NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred ---------chhhccCcchhHHHHHHH
Confidence 247899999999998873
No 36
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.5e-39 Score=346.58 Aligned_cols=207 Identities=28% Similarity=0.257 Sum_probs=154.5
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEe
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISA 299 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~ 299 (781)
...|..||||||||+|+|+.. ..||||+|+|+.+|+++..+ .....+++++|+||++++++||||
T Consensus 48 ~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~~~vin~ 112 (294)
T cd07482 48 DIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCG---SAESSWIIKAIIDAADDGVDVINL 112 (294)
T ss_pred cCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCC---CcCHHHHHHHHHHHHHCCCCEEEe
Confidence 456789999999999998742 25999999999999998776 357889999999999999999999
Q ss_pred cCCCCCCCCC--------CChHHHHHHHHHhCCCEEEEecCCCCCCCCC----------------------ccCCCCceE
Q 047013 300 SLGSKPKEHF--------ESSVAVGSFHAMMHGILVVASAGNSGPAEKT----------------------VDNVPPWVL 349 (781)
Q Consensus 300 SlG~~~~~~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vi 349 (781)
|||....... ...+..++..+.++|++||+||||+|..... .+...+++|
T Consensus 113 S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi 192 (294)
T cd07482 113 SLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVI 192 (294)
T ss_pred CCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceE
Confidence 9998632111 1345667777889999999999999964311 111234444
Q ss_pred EecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecC
Q 047013 350 TVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDA 429 (781)
Q Consensus 350 tVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g 429 (781)
+|||+
T Consensus 193 ~Vga~--------------------------------------------------------------------------- 197 (294)
T cd07482 193 TVSAT--------------------------------------------------------------------------- 197 (294)
T ss_pred EEEee---------------------------------------------------------------------------
Confidence 44442
Q ss_pred CcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccc
Q 047013 430 KIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTS 509 (781)
Q Consensus 430 ~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 509 (781)
...+.++
T Consensus 198 -------------------------------------------------------------------------~~~~~~~ 204 (294)
T cd07482 198 -------------------------------------------------------------------------DNNGNLS 204 (294)
T ss_pred -------------------------------------------------------------------------CCCCCcC
Confidence 2235778
Q ss_pred cccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCC---C------CCCCCCcccceeeccccchhhHHHHHHHHHHHh
Q 047013 510 FFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPS---H------EEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL 580 (781)
Q Consensus 510 ~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~---~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 580 (781)
.||++|+.. +|++|||+++........... . .......+.|..++|||||||+|||++|||+|+
T Consensus 205 ~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~ 277 (294)
T cd07482 205 SFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDK 277 (294)
T ss_pred ccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHH
Confidence 899998654 499999999853222111000 0 001123457899999999999999999999999
Q ss_pred CCCCCH-HHHHHHHHhc
Q 047013 581 HPDWSP-AAIKSAIMTT 596 (781)
Q Consensus 581 ~p~lt~-~~ik~~L~~T 596 (781)
+|.+++ .|||++|++|
T Consensus 278 ~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 278 NPLKKPPDEAIRILYNT 294 (294)
T ss_pred CCCCCcHHHHHHHHhhC
Confidence 999999 9999999986
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=2.2e-38 Score=334.26 Aligned_cols=244 Identities=26% Similarity=0.319 Sum_probs=187.0
Q ss_pred CCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCC
Q 047013 141 FGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTT 220 (781)
Q Consensus 141 ~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (781)
+|+||+|+|||+||+++||+|.+..... ..+..... .....
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~--------------------------~~~~~~~~-------------~~~~~ 41 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA--------------------------SYYVAVND-------------AGYAS 41 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc--------------------------cccccccc-------------ccCCC
Confidence 6999999999999999999998642110 00000000 00124
Q ss_pred CCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEec
Q 047013 221 SIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISAS 300 (781)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~S 300 (781)
..|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||||
T Consensus 42 ~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vin~S 110 (267)
T cd04848 42 NGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGS--TFSDADIAAAYDFLAASGVRIINNS 110 (267)
T ss_pred CCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCc--ccchHHHHHHHHHHHhCCCeEEEcc
Confidence 567889999999999998633 34589999999999999987531 2667889999999999999999999
Q ss_pred CCCCCCC------------CCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCcc---------CCCCceEEecccCCcee
Q 047013 301 LGSKPKE------------HFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVD---------NVPPWVLTVGASTTDRE 359 (781)
Q Consensus 301 lG~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~---------~~~p~vitVgA~~~d~~ 359 (781)
||..... .....+...+..+.++|+++|+||||++....... ...+++|+||+++.+
T Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~-- 188 (267)
T cd04848 111 WGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN-- 188 (267)
T ss_pred CCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC--
Confidence 9998422 14455677778888999999999999986543332 235788999985443
Q ss_pred eeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHH
Q 047013 360 FSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRA 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 439 (781)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcccc--ccCCCCC
Q 047013 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSF--FSARGPN 517 (781)
Q Consensus 440 ~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~ 517 (781)
+.... ||++|+.
T Consensus 189 ------------------------------------------------------------------~~~~~~~~s~~~~~ 202 (267)
T cd04848 189 ------------------------------------------------------------------GTIASYSYSNRCGV 202 (267)
T ss_pred ------------------------------------------------------------------CCcccccccccchh
Confidence 12333 4888864
Q ss_pred CCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 047013 518 LIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTA 597 (781)
Q Consensus 518 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA 597 (781)
. -.+++.|||.+|+++.+... ..|..++|||||||+|||++|||+|++|.|++++||++|++||
T Consensus 203 ~-----~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA 266 (267)
T cd04848 203 A-----ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTA 266 (267)
T ss_pred h-----hhheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhc
Confidence 3 23479999999999887311 2788999999999999999999999999999999999999998
Q ss_pred c
Q 047013 598 T 598 (781)
Q Consensus 598 ~ 598 (781)
+
T Consensus 267 ~ 267 (267)
T cd04848 267 T 267 (267)
T ss_pred C
Confidence 4
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=313.09 Aligned_cols=240 Identities=25% Similarity=0.330 Sum_probs=182.2
Q ss_pred CCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCC
Q 047013 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSK 304 (781)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 304 (781)
.-|||||||||+|+..+.. ...||||+|+|+.+++.+..- +...+...+.+|+..++++++||||||+|-.
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RL-gsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRL-GSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccc-cccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 4699999999999985432 357999999999999976543 1234566799999999999999999999988
Q ss_pred C-CCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccC---CCCceEEecccCCceeeeeeEEeCCceEEeeeeeecc
Q 047013 305 P-KEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDN---VPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEK 380 (781)
Q Consensus 305 ~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~ 380 (781)
. .+.....++..-..+.+.|+++|.||||+||.-.+++. ....+|.|||.-.....
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm-------------------- 440 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM-------------------- 440 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH--------------------
Confidence 3 12222334444444458999999999999999887775 34588999983221100
Q ss_pred CCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccc
Q 047013 381 GSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISL 460 (781)
Q Consensus 381 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 460 (781)
...|.++
T Consensus 441 ----~a~y~~~--------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ----QAEYSVR--------------------------------------------------------------------- 447 (1304)
T ss_pred ----Hhhhhhh---------------------------------------------------------------------
Confidence 0000000
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeec
Q 047013 461 NMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT 540 (781)
Q Consensus 461 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 540 (781)
..-...+..|||||||. ||.+--.|+|||+.|.+--.
T Consensus 448 -----------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~ 484 (1304)
T KOG1114|consen 448 -----------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQ 484 (1304)
T ss_pred -----------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCch
Confidence 00024688999999999 99999999999999976533
Q ss_pred CCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCC
Q 047013 541 NEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----LHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKA 616 (781)
Q Consensus 541 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 616 (781)
... ..-..|.|||||+|+++|++|||++ .+-.|||..||.+|++||.+++..
T Consensus 485 ~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------- 540 (1304)
T KOG1114|consen 485 YTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------- 540 (1304)
T ss_pred hhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------
Confidence 221 1567899999999999999999966 467899999999999999988542
Q ss_pred CCCcccCCcccccccCC
Q 047013 617 TPFAYGAGHVNPNSALD 633 (781)
Q Consensus 617 ~~~~~G~G~in~~~Av~ 633 (781)
.++.||.|++++++|.+
T Consensus 541 d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred chhccCcceeehhHHHH
Confidence 36899999999999998
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-33 Score=289.56 Aligned_cols=192 Identities=22% Similarity=0.229 Sum_probs=142.0
Q ss_pred CCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHh--hhcCCcEEE
Q 047013 221 SIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVA--IHDGVDIIS 298 (781)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a--~~~g~dVIN 298 (781)
..|+++|||||||||||. .|++|+|+|+..++... ..+.+..+++|+ .+.+++|||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~-------~~~~~~~~i~~~~~~~~gv~VIN 90 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK-------SNNGQWQECLEAQQNGNNVKIIN 90 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC-------CCCccHHHHHHHHHhcCCceEEE
Confidence 457899999999999997 35679999998666321 223466778887 567999999
Q ss_pred ecCCCCCCCC------CCChHHHHHHHHHhC-CCEEEEecCCCCCCCC-----CccCCCCceEEecccCCceeeeeeEEe
Q 047013 299 ASLGSKPKEH------FESSVAVGSFHAMMH-GILVVASAGNSGPAEK-----TVDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 299 ~SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-----~~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
||||...... ..+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++....
T Consensus 91 mS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~------- 163 (247)
T cd07488 91 HSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD------- 163 (247)
T ss_pred eCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-------
Confidence 9999873221 223466677776666 9999999999997532 22345688999998643310
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCC--CCCCCCCCCc
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSAR--GPNLIDPAIL 524 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~~ 524 (781)
....+.||++ +|+. ++..
T Consensus 164 ----------------------------------------------------------~~~~s~~sn~~~~~~~--~~~~ 183 (247)
T cd07488 164 ----------------------------------------------------------RFFASDVSNAGSEINS--YGRR 183 (247)
T ss_pred ----------------------------------------------------------cceecccccccCCCCC--CCCc
Confidence 0123455654 4544 7789
Q ss_pred cCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCH------HHHHHHHHhc
Q 047013 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP------AAIKSAIMTT 596 (781)
Q Consensus 525 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~------~~ik~~L~~T 596 (781)
||||+|||++|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|+++
T Consensus 184 ~~di~APG~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 184 KVLIVAPGSNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeEEEEeeeeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 9999999999998 221 6889999999999999999999999888764 4566666665
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=4.8e-31 Score=272.94 Aligned_cols=197 Identities=37% Similarity=0.488 Sum_probs=159.2
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh-hcCCcEEE
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI-HDGVDIIS 298 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~-~~g~dVIN 298 (781)
...+..+||||||++|++..... ...|+||+++|+.+|+..... ......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~---~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDG---SGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCC---CcCHHHHHHHHHHHHhccCCCEEE
Confidence 45578899999999999986332 127999999999999987765 467889999999999 89999999
Q ss_pred ecCCCCCCCCCCChHHHHHHHHHhC-CCEEEEecCCCCCCCC---CccCCCCceEEecccCCceeeeeeEEeCCceEEee
Q 047013 299 ASLGSKPKEHFESSVAVGSFHAMMH-GILVVASAGNSGPAEK---TVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKG 374 (781)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g 374 (781)
||||..... ....+...+..+.++ |+++|+|+||.+.... ..+...+++|+||+++.+.
T Consensus 107 ~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 107 LSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred eCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 999988432 345577777788877 9999999999997765 4566789999999865431
Q ss_pred eeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCC
Q 047013 375 ASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 375 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccc-cccCCCCCCCCCCCccCeeeeCCC
Q 047013 455 DQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTS-FFSARGPNLIDPAILKPDVIAPGV 533 (781)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~~KPDI~APG~ 533 (781)
... .++++|+ |||+.|||.
T Consensus 170 ----------------------------------------------------~~~~~~~~~~~--------~~~~~apg~ 189 (241)
T cd00306 170 ----------------------------------------------------TPASPSSNGGA--------GVDIAAPGG 189 (241)
T ss_pred ----------------------------------------------------CccCCcCCCCC--------CceEEeCcC
Confidence 122 4455554 559999999
Q ss_pred cEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 534 DIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 534 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
++....... ...+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 190 ~~~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 190 DILSSPTTG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CccCcccCC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 998751111 1279999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9e-24 Score=242.85 Aligned_cols=272 Identities=28% Similarity=0.403 Sum_probs=198.1
Q ss_pred cccccc--CCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCC
Q 047013 133 DSAWNK--ARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNS 210 (781)
Q Consensus 133 ~~~w~~--~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 210 (781)
...|.. +.+|+||+|+|||+||+..||+|.+... ..++|.+.
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~~~~~~~---------- 173 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV--------------------------AGGDFVDG---------- 173 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc--------------------------cccccccC----------
Confidence 467877 8999999999999999999999986410 00112211
Q ss_pred CCccCCCCC-CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCC-CCCCCCChHHHHHHHHH
Q 047013 211 SFLVPENLT-TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKP-NGANLCNAADIIAGFDV 288 (781)
Q Consensus 211 ~~~~p~~~~-~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-~~~~~~~~~~i~~ai~~ 288 (781)
... ...|..+|||||+|++++.... ......|+||+++++.++++... + .....+++.+|++
T Consensus 174 ------~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g---~~~~~~~~~~i~~ 237 (508)
T COG1404 174 ------DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGG---SGELSDVAEGIEG 237 (508)
T ss_pred ------CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCC---cccHHHHHHHHHH
Confidence 011 2578899999999999984211 11235899999999999999876 4 5777888999999
Q ss_pred hhhcC--CcEEEecCCCCCCCCCCChHHHHHHHHHhCC-CEEEEecCCCCCCCCC----ccCCC--CceEEecccCCcee
Q 047013 289 AIHDG--VDIISASLGSKPKEHFESSVAVGSFHAMMHG-ILVVASAGNSGPAEKT----VDNVP--PWVLTVGASTTDRE 359 (781)
Q Consensus 289 a~~~g--~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--p~vitVgA~~~d~~ 359 (781)
++..+ +++||||+|..........+..++..++..| +++|+|+||.+..... .+... +.+++|||.+.
T Consensus 238 ~~~~~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--- 314 (508)
T COG1404 238 AANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--- 314 (508)
T ss_pred HHhcCCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---
Confidence 99999 9999999998511223445667777787777 9999999999866521 11211 35666666321
Q ss_pred eeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHH
Q 047013 360 FSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRA 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 439 (781)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC
Q 047013 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI 519 (781)
Q Consensus 440 ~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (781)
.+..+.||++|+..
T Consensus 315 -----------------------------------------------------------------~~~~~~~s~~g~~~- 328 (508)
T COG1404 315 -----------------------------------------------------------------SDTVASFSNDGSPT- 328 (508)
T ss_pred -----------------------------------------------------------------CCccccccccCCCC-
Confidence 25778899999741
Q ss_pred CCCCccCeeeeCCCcEEe-----eecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCC-CCCHHHHHHHH
Q 047013 520 DPAILKPDVIAPGVDIIA-----AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHP-DWSPAAIKSAI 593 (781)
Q Consensus 520 ~~~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lt~~~ik~~L 593 (781)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|.+||+++.+| .+++.+++..+
T Consensus 329 -----~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~ 392 (508)
T COG1404 329 -----GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLI 392 (508)
T ss_pred -----CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHH
Confidence 2299999999998 444421 1499999999999999999999999999 89999999998
Q ss_pred HhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCC
Q 047013 594 MTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 594 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
..++.... .......++.|..+...+..
T Consensus 393 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 393 VTTAGLTP------------LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred hhcccccc------------CCccccccccCccccccccc
Confidence 88876300 01123456667666555544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3e-24 Score=217.51 Aligned_cols=310 Identities=18% Similarity=0.223 Sum_probs=190.3
Q ss_pred CccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCC
Q 047013 132 PDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSS 211 (781)
Q Consensus 132 ~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (781)
+..+|..+++||+|+++|+|.||||-||+++.+ ..-...++|..+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n------------------------ynaeasydfssn----------- 194 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------------YNAEASYDFSSN----------- 194 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------------cCceeecccccC-----------
Confidence 468999999999999999999999999999743 111112222221
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
+|-|.+.....-.+.|||.|||-+++...++ .+| .|||.+.++..+|+++. ....++++|-....+
T Consensus 195 dpfpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq------pymtdlieansmghe 260 (629)
T KOG3526|consen 195 DPFPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ------PYMTDLIEANSMGHE 260 (629)
T ss_pred CCCCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC------chhhhhhhhcccCCC
Confidence 1122221111125899999999988776543 456 59999999999999985 456667665433322
Q ss_pred -cCCcEEEecCCCCCCCC-CCCh---HHHHHHHHHh-----CCCEEEEecCCCCCCC-CCccC--CCCceEEecccCCce
Q 047013 292 -DGVDIISASLGSKPKEH-FESS---VAVGSFHAMM-----HGILVVASAGNSGPAE-KTVDN--VPPWVLTVGASTTDR 358 (781)
Q Consensus 292 -~g~dVIN~SlG~~~~~~-~~~~---~~~a~~~a~~-----~Gi~vV~AAGN~g~~~-~~~~~--~~p~vitVgA~~~d~ 358 (781)
..++|.+-|||....+- .+.| ..+|+.+-++ .|-++|.|.|..|... +.... .+-|.|++-+.-.|.
T Consensus 261 p~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg 340 (629)
T KOG3526|consen 261 PSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDG 340 (629)
T ss_pred CceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCC
Confidence 35899999999874222 2222 2233333333 3558999999887532 22222 334555554421110
Q ss_pred eeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHH
Q 047013 359 EFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQR 438 (781)
Q Consensus 359 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 438 (781)
. +....+.|.
T Consensus 341 -----------~-------------------------------nahydescs---------------------------- 350 (629)
T KOG3526|consen 341 -----------E-------------------------------NAHYDESCS---------------------------- 350 (629)
T ss_pred -----------c-------------------------------cccccchhh----------------------------
Confidence 0 001112221
Q ss_pred HHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCC
Q 047013 439 AAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNL 518 (781)
Q Consensus 439 ~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 518 (781)
.-..+.||+-|-.+
T Consensus 351 ------------------------------------------------------------------stlastfsng~rnp 364 (629)
T KOG3526|consen 351 ------------------------------------------------------------------STLASTFSNGGRNP 364 (629)
T ss_pred ------------------------------------------------------------------HHHHHHhhcCCcCC
Confidence 12345677766544
Q ss_pred CCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 519 IDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 519 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
+- |+. .+. -++......||||.|||-.||+.||.++++|.|++.+++.+-.-|.+
T Consensus 365 --------et---gva--ttd------------lyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltsk 419 (629)
T KOG3526|consen 365 --------ET---GVA--TTD------------LYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSK 419 (629)
T ss_pred --------Cc---cee--eec------------cccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecc
Confidence 21 211 111 11125677899999999999999999999999999999998888776
Q ss_pred cCC-CCCCccccc--CCCCCCCCCcccCCcccccccCCCCeeecCCCcccccccccCCC
Q 047013 599 TED-SSKHPILDQ--VTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGY 654 (781)
Q Consensus 599 ~~~-~~g~~~~~~--~~~~~~~~~~~G~G~in~~~Av~~~l~~~~~~~~~~~~~~~~g~ 654 (781)
+.. .++.--... .....-.+.-||+|.+|+.+.+..+..+...+.- |-|..|.
T Consensus 420 rnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 420 RNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred cchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCCCc---eeecccc
Confidence 532 111100000 2223345567999999998888766666666544 4576663
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=3.2e-17 Score=179.54 Aligned_cols=101 Identities=25% Similarity=0.278 Sum_probs=79.8
Q ss_pred ccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc---CCcEEEecCCCCCCCC---CCChHHHHHHHHHhCC
Q 047013 251 GTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD---GVDIISASLGSKPKEH---FESSVAVGSFHAMMHG 324 (781)
Q Consensus 251 ~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~G 324 (781)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||...... +...+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 456899999999999997642 34577888888877 9999999999873221 2355777888899999
Q ss_pred CEEEEecCCCCCCCC-----------CccCCCCceEEecccCCce
Q 047013 325 ILVVASAGNSGPAEK-----------TVDNVPPWVLTVGASTTDR 358 (781)
Q Consensus 325 i~vV~AAGN~g~~~~-----------~~~~~~p~vitVgA~~~d~ 358 (781)
|+||+|+||+|.... .++...|||++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999997654 2345789999999987654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.21 E-value=8.3e-11 Score=111.42 Aligned_cols=107 Identities=24% Similarity=0.252 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccccc-cccccEEEEehhhHHHHHHHHh
Q 047013 407 TQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISLNM-VHFLPTAYVNYKDGQSVYAYIY 484 (781)
Q Consensus 407 ~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p~~~i~~~~g~~l~~~~~ 484 (781)
+.|...++...+++|||+||+||. .+.+|..+++++||.++|++|+.......... ...+|+++|+.++|+.|+++++
T Consensus 34 g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~ 113 (143)
T cd02133 34 GLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALE 113 (143)
T ss_pred cCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHh
Confidence 456666677778999999999999 99999999999999999999987543222211 2468999999999999999998
Q ss_pred cCCCcEEEEecceeeeccccCCccccccCCCCCC
Q 047013 485 NTENPVASMTNSITEFNKIWSRMTSFFSARGPNL 518 (781)
Q Consensus 485 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 518 (781)
+ . +++.+..+.. ..+...++.||||||+.
T Consensus 114 ~--~--~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 114 S--S--KKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred C--C--CeEEEEeccc-cccCCccccccCcCCCC
Confidence 8 3 4444343333 44567799999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.15 E-value=3.9e-10 Score=104.64 Aligned_cols=122 Identities=41% Similarity=0.635 Sum_probs=96.2
Q ss_pred EEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCC--cchHHHHHHHh
Q 047013 364 VTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAK--IGDAKGQRAAQ 441 (781)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~--~~~~~~~~~~~ 441 (781)
+.++|+.++.|++++.... ..+++++..+. ........|.+..++..+++|||+||+|+. .+.+|..++++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~ 74 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKA 74 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHH
Confidence 6789999999999996543 35677763321 123345789999888899999999999987 66899999999
Q ss_pred cCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEE
Q 047013 442 AGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVAS 492 (781)
Q Consensus 442 ~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 492 (781)
+||.|+|++++.............+|.+.|..++|+.|++|+++...++++
T Consensus 75 ~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 75 AGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999999987644333333467999999999999999999988766554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.89 E-value=5e-09 Score=89.16 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=57.9
Q ss_pred cEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCc----hhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEE
Q 047013 29 PYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSV----EEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVS 104 (781)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~ 104 (781)
+|||.||+.... ......+.+++.+++.+. .....++.+.|...|+||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 599999998654 234566666666543321 34568999999999999999999999999999999999
Q ss_pred EEEcceeccc
Q 047013 105 VFLEEGIDLH 114 (781)
Q Consensus 105 V~~~~~~~~~ 114 (781)
|+|++.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999998764
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.77 E-value=6.1e-08 Score=87.77 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=63.0
Q ss_pred EEEecCCCCcEEEEEEEEecCCCCeeEEEEEecC--------Cc----------e-EEEEeecEEEEcCCCcEEEEEEEE
Q 047013 685 IAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEI--------VG----------V-SAVVEPITLNFTKYGEELTFKITF 745 (781)
Q Consensus 685 ~~~~~~~~~~~~~~~tv~n~~~~~~~y~~~~~~~--------~~----------~-~v~~~p~~~~~~~~g~~~~~~vt~ 745 (781)
|+|++.. ...++++||+|.|++..+|+++.... .| . .+...+..+++ ++|++++|+|++
T Consensus 1 i~L~d~~-~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti 78 (112)
T PF06280_consen 1 ISLKDTG-NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTI 78 (112)
T ss_dssp EEEEEE--SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEE
T ss_pred CCccccC-CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEE
Confidence 4667775 67999999999999999999987610 11 1 56777888999 899999999999
Q ss_pred EeecCCCCCCCceEEEEEEEEcC-c-ceEEEEEE
Q 047013 746 SVKGNDKPVATDYVFGELVWSDG-F-HNVKSTIA 777 (781)
Q Consensus 746 ~~~~~~~~~~~~~~~G~i~~~~~-~-~~v~~P~~ 777 (781)
++...-....+.+++|||.|++. . +.++|||+
T Consensus 79 ~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 79 TPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp E--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 99311112457899999999874 4 48999996
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.71 E-value=6.5e-08 Score=88.98 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=72.4
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc---cc--cccccccEEEEehhhHHHH
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI---SL--NMVHFLPTAYVNYKDGQSV 479 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~---~~--~~~~~~p~~~i~~~~g~~l 479 (781)
...|.+..++..+++|||+||+||. .|.+|..+++++||.++|++|+...... .. .....+|+++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 4789988888889999999999999 9999999999999999999997663211 11 1335699999999999999
Q ss_pred HHHHhcCCCcEEE
Q 047013 480 YAYIYNTENPVAS 492 (781)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (781)
++++.++.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999988766554
No 49
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.70 E-value=7.2e-08 Score=86.95 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=68.7
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc--cc--cccccccEEEEehhhHHHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI--SL--NMVHFLPTAYVNYKDGQSV 479 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l 479 (781)
....|...++...+++|||+|++||. +|.+|..+++++||.++|+||+...... .. .....||+++|+.++|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 45789999998889999999999999 9999999999999999999998753111 11 1335789999999999999
Q ss_pred HHHHhcC
Q 047013 480 YAYIYNT 486 (781)
Q Consensus 480 ~~~~~~~ 486 (781)
.+.+.+.
T Consensus 109 ~~~l~~~ 115 (120)
T cd02129 109 QQTFGDS 115 (120)
T ss_pred HHHhccC
Confidence 9988743
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.70 E-value=7.9e-08 Score=89.74 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=73.8
Q ss_pred ccCCCCCCCC--CCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccc----cccccccEEEEehhhHH
Q 047013 405 DATQCKNGTI--DPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISL----NMVHFLPTAYVNYKDGQ 477 (781)
Q Consensus 405 ~~~~c~~~~~--~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~ 477 (781)
....|.+... ++.++.|+|+|++||. +|.+|..+++++||.++|+||+...+.... .....+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4568998877 6678999999999999 999999999999999999999886322111 11247899999999999
Q ss_pred HHHHHHhcCCCcEEEE
Q 047013 478 SVYAYIYNTENPVASM 493 (781)
Q Consensus 478 ~l~~~~~~~~~~~~~i 493 (781)
.|++++.++.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999988877653
No 51
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.5e-07 Score=104.31 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=99.0
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
...|..+++|+++.|+|.|.|+...||+.... .-..+..++...-
T Consensus 23 ~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~~----------- 67 (431)
T KOG3525|consen 23 QNAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRHD----------- 67 (431)
T ss_pred eeccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecCC-----------
Confidence 57899999999999999999999999998752 1112222222110
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh-
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH- 291 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~- 291 (781)
..|..-.+......|||-|++-.+...++.. . ..|+++++++..++++...- .+...+......
T Consensus 68 ~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~--C------~vg~~~~~~~~g~~~l~~~v-------~~~~~~~~~~~~~ 132 (431)
T KOG3525|consen 68 NDPEPRCDGTNENKHGTRCAGCVAARANNLT--C------GVGVAYNATIGGIRMLAGCV-------SDAVEAPSLGFGP 132 (431)
T ss_pred CCcccccCCCCccccCCCCCcccccccCCCc--C------CCCcccCccccceeeeeeec-------ccceecccccCCC
Confidence 1122222344568999999999998862221 2 27999999999999986322 233333333232
Q ss_pred cCCcEEEecCCCCCCCC-CC---ChHHHHHHH-----HHhCCCEEEEecCCCCCCC
Q 047013 292 DGVDIISASLGSKPKEH-FE---SSVAVGSFH-----AMMHGILVVASAGNSGPAE 338 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~~-~~---~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~ 338 (781)
.-+++-..|||.....- .. .....+... ...+|-+.|+|.||.|...
T Consensus 133 ~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 133 CHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 34899999999873111 11 112222322 2256788999999988544
No 52
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.62 E-value=2e-07 Score=84.66 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=71.0
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCc-ccc---cc----ccccccEEEEehhhH
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQ-NIS---LN----MVHFLPTAYVNYKDG 476 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~---~~----~~~~~p~~~i~~~~g 476 (781)
...|.+... ..+++|||+|++||. +|.+|..+++++||.++|+||+.... ... .. ....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467986543 568999999999999 99999999999999999999976531 111 11 234799999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 047013 477 QSVYAYIYNTENPVASM 493 (781)
Q Consensus 477 ~~l~~~~~~~~~~~~~i 493 (781)
+.|++.+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999998877655
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.59 E-value=2.5e-07 Score=84.59 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=70.6
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccc----cccccccEEEEehhhHHHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISL----NMVHFLPTAYVNYKDGQSV 479 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 479 (781)
....|.+.... .+++|||+||+|+. +|.+|..+++++||.|+|++|+........ .....+|+++|+.++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45689888774 46999999999998 999999999999999999999876421111 1234699999999999999
Q ss_pred HHHHhcCCCcEEE
Q 047013 480 YAYIYNTENPVAS 492 (781)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (781)
++|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988766654
No 54
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.57 E-value=6.4e-08 Score=85.85 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=63.4
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCC----ccccccccccccEEEEehhhHHHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRED----QNISLNMVHFLPTAYVNYKDGQSV 479 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~----~~~~~~~~~~~p~~~i~~~~g~~l 479 (781)
....|....+...+++|||+||+||. +|.+|..+++++||.|+|++|.... ..........+|+++|+.++|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 34567778888999999999999999 9999999999999999999992211 122233457899999999999999
Q ss_pred HHHH
Q 047013 480 YAYI 483 (781)
Q Consensus 480 ~~~~ 483 (781)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9875
No 55
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.54 E-value=3.5e-07 Score=84.37 Aligned_cols=86 Identities=27% Similarity=0.321 Sum_probs=68.9
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcc-------cccc-----ccccccEEEEe
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQN-------ISLN-----MVHFLPTAYVN 472 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~-------~~~~-----~~~~~p~~~i~ 472 (781)
...|.+..+ +.+++|||+|++||. +|.+|..+++++||.++|++|+..+.. .... +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 557899999999999 999999999999999999998755320 1111 23579999999
Q ss_pred hhhHHHHHHHHhcCCCcEEE
Q 047013 473 YKDGQSVYAYIYNTENPVAS 492 (781)
Q Consensus 473 ~~~g~~l~~~~~~~~~~~~~ 492 (781)
..+|+.|++.+..+...++.
T Consensus 106 ~~dG~~L~~~l~~~~~~~~~ 125 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEVL 125 (126)
T ss_pred HHHHHHHHHHHHhCCceEEe
Confidence 99999999999987766543
No 56
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.53 E-value=3.7e-07 Score=84.00 Aligned_cols=85 Identities=22% Similarity=0.261 Sum_probs=69.1
Q ss_pred CCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCC-Cccc-c--ccccccccEEEEehhhHHHHHH
Q 047013 407 TQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRE-DQNI-S--LNMVHFLPTAYVNYKDGQSVYA 481 (781)
Q Consensus 407 ~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~-~~~~-~--~~~~~~~p~~~i~~~~g~~l~~ 481 (781)
..|.+..+ +.+++|||+|++||. .|.+|..+++++||.++|+||+.. +... . ......+|+++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46877665 357999999999999 999999999999999999999873 2111 1 1123579999999999999999
Q ss_pred HHhcCCCcEEE
Q 047013 482 YIYNTENPVAS 492 (781)
Q Consensus 482 ~~~~~~~~~~~ 492 (781)
.+.++++.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99998877664
No 57
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.53 E-value=3.3e-07 Score=84.79 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=71.8
Q ss_pred ccCCCCCCC--CCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcccc--c----cccccccEEEEehhh
Q 047013 405 DATQCKNGT--IDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNIS--L----NMVHFLPTAYVNYKD 475 (781)
Q Consensus 405 ~~~~c~~~~--~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~ 475 (781)
....|.+.. +...+++|||+||+|+. .+.+|..+++++||.|+|++++....... . .....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 456788877 77889999999999998 99999999999999999999987632111 1 133579999999999
Q ss_pred HHHHHHHHhcCCCcEEE
Q 047013 476 GQSVYAYIYNTENPVAS 492 (781)
Q Consensus 476 g~~l~~~~~~~~~~~~~ 492 (781)
|+.|++++.++.+.+++
T Consensus 109 g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 109 GEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHhcCCceEEe
Confidence 99999999987665543
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.48 E-value=5.1e-07 Score=83.87 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=60.6
Q ss_pred CCCCCCceeEEEEEecCC-c-----chHHHHHHHhcCceEEEEecCC--CCcc-ccccc---cccccEEEEehhhHHHHH
Q 047013 413 TIDPEKVKGKILICYDAK-I-----GDAKGQRAAQAGAVGMILANSR--EDQN-ISLNM---VHFLPTAYVNYKDGQSVY 480 (781)
Q Consensus 413 ~~~~~~~~gkivl~~~g~-~-----~~~~~~~~~~~Ga~g~i~~~~~--~~~~-~~~~~---~~~~p~~~i~~~~g~~l~ 480 (781)
++.+.+++|||+|++||. . |.+|..+++++||.|+|+||+. .+.. ....+ ..+||+++|++++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 455668999999999999 7 9999999999999999999997 3211 12222 358999999999999999
Q ss_pred HHHhcC
Q 047013 481 AYIYNT 486 (781)
Q Consensus 481 ~~~~~~ 486 (781)
+.+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988654
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.45 E-value=8e-07 Score=83.48 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=68.4
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccc------cccccccEEEEehhhHHH
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISL------NMVHFLPTAYVNYKDGQS 478 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 478 (781)
...|.+.. .+++|||+|++||. +|.+|..+++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46788764 37899999999999 999999999999999999999765322111 113579999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 047013 479 VYAYIYNTENPVAS 492 (781)
Q Consensus 479 l~~~~~~~~~~~~~ 492 (781)
|++.+.++...+++
T Consensus 125 L~~~l~~g~~Vtv~ 138 (139)
T cd02132 125 LNKSLDQGKKVEVL 138 (139)
T ss_pred HHHHHHcCCcEEEe
Confidence 99999988776553
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.40 E-value=1.4e-06 Score=80.37 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=68.2
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccc-cccccccEEEEehhhHHHHHHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISL-NMVHFLPTAYVNYKDGQSVYAY 482 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~-~~~~~~p~~~i~~~~g~~l~~~ 482 (781)
....|.+...+..+++|||+|++||. .|.+|..+++++||.++|+||+........ .....+|.+.+ .++|+.|++.
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~ 118 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDA 118 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHH
Confidence 45689877666668999999999999 999999999999999999999875432222 22234566666 9999999999
Q ss_pred HhcCCCcEEE
Q 047013 483 IYNTENPVAS 492 (781)
Q Consensus 483 ~~~~~~~~~~ 492 (781)
+.++...+++
T Consensus 119 l~~G~~vtv~ 128 (129)
T cd02124 119 LAAGSNVTVD 128 (129)
T ss_pred HhcCCeEEEe
Confidence 9888766554
No 61
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.39 E-value=1.4e-06 Score=80.31 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=68.8
Q ss_pred ccCCCCCCCCC--CC----CceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc-c----------ccccccc
Q 047013 405 DATQCKNGTID--PE----KVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI-S----------LNMVHFL 466 (781)
Q Consensus 405 ~~~~c~~~~~~--~~----~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~----------~~~~~~~ 466 (781)
....|.+.... +. ...++|+|++||. +|.+|..+|+++||.++|+||+...... . ......+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 34578865443 22 3789999999999 9999999999999999999998653211 1 1123469
Q ss_pred cEEEEehhhHHHHHHHHhcCCCcEEE
Q 047013 467 PTAYVNYKDGQSVYAYIYNTENPVAS 492 (781)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~ 492 (781)
|+++|+..+|+.|++.+.++...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999998877654
No 62
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.2e-06 Score=100.72 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=58.1
Q ss_pred ccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc-CCcEEEecCCCCC---CCC--CCChHHHHHHHHHhCC
Q 047013 251 GTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD-GVDIISASLGSKP---KEH--FESSVAVGSFHAMMHG 324 (781)
Q Consensus 251 ~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~-g~dVIN~SlG~~~---~~~--~~~~~~~a~~~a~~~G 324 (781)
.-..-+||+|+|..|-.-. .....+..|+++-... ---+|-.||+... ... +-+.+......|..+|
T Consensus 286 E~s~A~AP~A~I~lvvap~-------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeG 358 (1174)
T COG4934 286 EWSHAMAPKANIDLVVAPN-------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEG 358 (1174)
T ss_pred hhhhccCccCceEEEEcCC-------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccc
Confidence 3446789999999987621 2233333333332221 1133445666541 111 2233445556788999
Q ss_pred CEEEEecCCCCCCCCC--------ccCCCCceEEecc
Q 047013 325 ILVVASAGNSGPAEKT--------VDNVPPWVLTVGA 353 (781)
Q Consensus 325 i~vV~AAGN~g~~~~~--------~~~~~p~vitVgA 353 (781)
|.+++|+|.+|....+ .+..+|++++||-
T Consensus 359 ITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 359 ITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred eEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999876643 2346799999997
No 63
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.33 E-value=2e-06 Score=77.93 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=64.2
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCc-c-ccc----cccccccEEEEehhhHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQ-N-ISL----NMVHFLPTAYVNYKDGQ 477 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~-~-~~~----~~~~~~p~~~i~~~~g~ 477 (781)
....|.+. +..+++|||+|++||. +|.+|..+++++||.++|+||+.... . ... .....+|+++|+.++++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 45679766 5688999999999999 99999999999999999999876532 1 111 22347999999999999
Q ss_pred HHHHHHhc
Q 047013 478 SVYAYIYN 485 (781)
Q Consensus 478 ~l~~~~~~ 485 (781)
.|..++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99887664
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.22 E-value=5.2e-06 Score=79.25 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=68.3
Q ss_pred cCCCCCCCCCC---CCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc-ccc-----ccccccEEEEehhh
Q 047013 406 ATQCKNGTIDP---EKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI-SLN-----MVHFLPTAYVNYKD 475 (781)
Q Consensus 406 ~~~c~~~~~~~---~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~~~-----~~~~~p~~~i~~~~ 475 (781)
...|.+....+ .++.|+|+|++||. +|.+|..+|+++||.++|++|+...... ... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798777644 78999999999999 9999999999999999999998654221 111 13489999999999
Q ss_pred HHHHHHHHhcCCC
Q 047013 476 GQSVYAYIYNTEN 488 (781)
Q Consensus 476 g~~l~~~~~~~~~ 488 (781)
|+.|+.++...+.
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987655
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.07 E-value=2.3e-05 Score=72.49 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCCCCCCCceeEEEEEecCC---cchHHHHHHHhcCceEEEEecCCCCccccc-------cccccccEEEEehhhHHHHH
Q 047013 411 NGTIDPEKVKGKILICYDAK---IGDAKGQRAAQAGAVGMILANSREDQNISL-------NMVHFLPTAYVNYKDGQSVY 480 (781)
Q Consensus 411 ~~~~~~~~~~gkivl~~~g~---~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~-------~~~~~~p~~~i~~~~g~~l~ 480 (781)
+.++...+++|||+|++++. .+.+|..+++++||.|+|++|+........ .....+|++.|+.++|+.|.
T Consensus 35 ~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~ 114 (127)
T cd04819 35 PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA 114 (127)
T ss_pred HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence 33455668999999999986 678999999999999999998765432111 22357999999999999999
Q ss_pred HHHhcCCCc
Q 047013 481 AYIYNTENP 489 (781)
Q Consensus 481 ~~~~~~~~~ 489 (781)
+.++.+...
T Consensus 115 ~~l~~g~~~ 123 (127)
T cd04819 115 RVAERNDTL 123 (127)
T ss_pred HHHhcCCce
Confidence 999875443
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.22 E-value=0.0011 Score=61.78 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=59.0
Q ss_pred CCCCceeEEEEEecCC-------cchHH-------HHHHHhcCceEEEEecCCCC-------ccccc-cccccccEEEEe
Q 047013 415 DPEKVKGKILICYDAK-------IGDAK-------GQRAAQAGAVGMILANSRED-------QNISL-NMVHFLPTAYVN 472 (781)
Q Consensus 415 ~~~~~~gkivl~~~g~-------~~~~~-------~~~~~~~Ga~g~i~~~~~~~-------~~~~~-~~~~~~p~~~i~ 472 (781)
+..+++|||+|++++. .|..| ...++++||.++|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 4568999999999865 45555 68999999999999986422 21111 222469999999
Q ss_pred hhhHHHHHHHHhcCCCcEEE
Q 047013 473 YKDGQSVYAYIYNTENPVAS 492 (781)
Q Consensus 473 ~~~g~~l~~~~~~~~~~~~~ 492 (781)
.+++..|...+..+..++++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999987665543
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.96 E-value=0.0016 Score=63.28 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=55.2
Q ss_pred CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCC------------------cccc-------cc--------
Q 047013 416 PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRED------------------QNIS-------LN-------- 461 (781)
Q Consensus 416 ~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~------------------~~~~-------~~-------- 461 (781)
..+++|||+|+++|. .+.+|..+|+++||+|+|+|++... ++.. ..
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 568999999999999 8999999999999999999987421 0000 00
Q ss_pred -ccccccEEEEehhhHHHHHHHHhc
Q 047013 462 -MVHFLPTAYVNYKDGQSVYAYIYN 485 (781)
Q Consensus 462 -~~~~~p~~~i~~~~g~~l~~~~~~ 485 (781)
....||+.-|+..+++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013589999999999999998764
No 68
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.86 E-value=0.025 Score=50.00 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=62.5
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEEEcCcceE
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNV 772 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~~~~~~~v 772 (781)
...+.+++|+|.+..+..|++.........++++|..-.+ ++|++.+++|+|.+ ....+ .+++.|.+...+..+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~----~~~~g-~~~~~l~i~~e~~~~ 93 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSP----TKPLG-DYEGSLVITTEGGSF 93 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEe----CCCCc-eEEEEEEEEECCeEE
Confidence 6778889999999999999997654334557777766666 79999999999995 12333 468988887666788
Q ss_pred EEEEEEEe
Q 047013 773 KSTIAVKL 780 (781)
Q Consensus 773 ~~P~~~~~ 780 (781)
.+|+-.+.
T Consensus 94 ~i~v~a~~ 101 (102)
T PF14874_consen 94 EIPVKAEV 101 (102)
T ss_pred EEEEEEEE
Confidence 88887654
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.12 E-value=0.018 Score=62.64 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=64.8
Q ss_pred CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCc------cccccccccccEEEEehhhHHHHHHHHhcCCC
Q 047013 416 PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQ------NISLNMVHFLPTAYVNYKDGQSVYAYIYNTEN 488 (781)
Q Consensus 416 ~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~------~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 488 (781)
...++||++++.||. .|.+|+..++++||.++++.|+...- +........||+++|+.++++.+.+...++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 457899999999999 99999999999999999999996532 22233346899999999999999987777777
Q ss_pred cEEEEe
Q 047013 489 PVASMT 494 (781)
Q Consensus 489 ~~~~i~ 494 (781)
.++.+.
T Consensus 171 V~~~lY 176 (541)
T KOG2442|consen 171 VELALY 176 (541)
T ss_pred EEEEEE
Confidence 766653
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.63 E-value=0.019 Score=53.37 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=41.8
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-c------------chHHHHHHHhcCceEEEEecCCC
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-I------------GDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~------------~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
...|...++...+++|||+|+.++. . +..|..++.++||.|+|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3567777888889999999999976 2 56899999999999999999754
No 71
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.39 E-value=0.063 Score=44.88 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=39.4
Q ss_pred CcEEEEEEEEecCCCC-eeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCce
Q 047013 693 GSMTVSRRLKNVGTPT-CTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDY 758 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~-~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~ 758 (781)
...+++++|+|.|..+ ...++++..|.|-++...|..+.--++|+++++++++++. .....+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp--~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP--ADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE---TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC--CCCCCceE
Confidence 5788999999999755 4688888899999988888777544899999999999983 34444443
No 72
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=95.24 E-value=0.025 Score=52.93 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=41.9
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-------------------cchHHHHHHHhcCceEEEEecCCC
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-------------------IGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-------------------~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
...|...++...|++|||+|+.+|. .+..|..+++++||.|+|++++..
T Consensus 33 a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 33 APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 3468888888999999999998874 255799999999999999999865
No 73
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.23 E-value=0.068 Score=50.65 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=52.7
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-------------------cchHHHHHHHhcCceEEEEecCCCCcc---cccccc
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-------------------IGDAKGQRAAQAGAVGMILANSREDQN---ISLNMV 463 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-------------------~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~~~~~ 463 (781)
...|...++...+++|||+|+.++. .+..|..++.+.||.|+|+|++..... ......
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~ 112 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRF 112 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCccccccccc
Confidence 4567777778889999999998762 346799999999999999999865321 111111
Q ss_pred ccccEEEEehhhHHHHHHH
Q 047013 464 HFLPTAYVNYKDGQSVYAY 482 (781)
Q Consensus 464 ~~~p~~~i~~~~g~~l~~~ 482 (781)
..-..+.++....+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 113 GGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred CccceEEechHHHHHHhhh
Confidence 1222566666666665553
No 74
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.20 E-value=0.026 Score=52.80 Aligned_cols=38 Identities=18% Similarity=-0.007 Sum_probs=35.3
Q ss_pred CCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCC
Q 047013 417 EKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 417 ~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
-+++|||+|++.|. .+..|..+|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 57999999999999 999999999999999999998753
No 75
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.63 E-value=0.049 Score=54.99 Aligned_cols=49 Identities=31% Similarity=0.330 Sum_probs=40.5
Q ss_pred cCCCCCCCCC-----CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCC
Q 047013 406 ATQCKNGTID-----PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 406 ~~~c~~~~~~-----~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
...|...+++ ..+++|||+|+++|. .+..|..+|+++||.|+|+|++..
T Consensus 52 vnyG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 52 ANYGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred cCCCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 3456655443 568999999999998 778999999999999999999754
No 76
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=92.68 E-value=2.1 Score=39.09 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=53.5
Q ss_pred EEEecCCCCcEEEEEEEEecCCCCeeEEEEEec----CCceE--------------------EEEeecEEEEcCCCcEEE
Q 047013 685 IAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITE----IVGVS--------------------AVVEPITLNFTKYGEELT 740 (781)
Q Consensus 685 ~~~~~~~~~~~~~~~tv~n~~~~~~~y~~~~~~----~~~~~--------------------v~~~p~~~~~~~~g~~~~ 740 (781)
|.|.--.+++.+++++|+|.+++..+|.+++.. ..|+- +++ |..+++ +++|+++
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~ 96 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKT 96 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEE
Confidence 555444457899999999999999999998642 11110 222 344788 8999999
Q ss_pred EEEEEEeecCCCCCCCceEEEEEEEE
Q 047013 741 FKITFSVKGNDKPVATDYVFGELVWS 766 (781)
Q Consensus 741 ~~vt~~~~~~~~~~~~~~~~G~i~~~ 766 (781)
++++++. +...-.+.+-|-|.++
T Consensus 97 V~~~i~~---P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 97 VTFTIKM---PKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEc---CCCCcCCEEEeeEEEE
Confidence 9999998 4444455566777765
No 77
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.56 E-value=2.4 Score=38.42 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=40.3
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEee
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~ 748 (781)
-.-.++++|.|....+.+|+++++.++++++......+++ ++|++.++.|.+.+.
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEEC
Confidence 3567899999999999999999999889999665578888 899999999999984
No 78
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.41 Score=51.26 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=61.3
Q ss_pred CCCCCCCC---CCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcccccc----ccccccEEEEehhhHHH
Q 047013 407 TQCKNGTI---DPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISLN----MVHFLPTAYVNYKDGQS 478 (781)
Q Consensus 407 ~~c~~~~~---~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 478 (781)
.+|.+-.. ........++|+.||+ +|.+|..+|+++|..++|+||+......... ....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45664322 2456678899999999 9999999999999999999998765433222 23478999999999999
Q ss_pred HHHHHhcC
Q 047013 479 VYAYIYNT 486 (781)
Q Consensus 479 l~~~~~~~ 486 (781)
|.+|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 98875543
No 79
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.69 E-value=0.22 Score=46.12 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=64.8
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc------ccc----ccccccEEEEeh
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI------SLN----MVHFLPTAYVNY 473 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~----~~~~~p~~~i~~ 473 (781)
....|.... +.-+..|.+.|++||+ +|..|..++.++||.++|+.++...... ... +...+|++++-.
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 456776432 2346788999999999 9999999999999999999987653222 122 235799999999
Q ss_pred hhHHHHHHHHhcCCCcEEEE
Q 047013 474 KDGQSVYAYIYNTENPVASM 493 (781)
Q Consensus 474 ~~g~~l~~~~~~~~~~~~~i 493 (781)
.+|..+...+..-...-+.|
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred cceEEEehhHHHhCCccEEE
Confidence 98887777776655544433
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=86.83 E-value=1.1 Score=42.96 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCCCCceeEEEEEecCC-cc-------------------hHHHHHHHhcCceEEEEecCC
Q 047013 412 GTIDPEKVKGKILICYDAK-IG-------------------DAKGQRAAQAGAVGMILANSR 453 (781)
Q Consensus 412 ~~~~~~~~~gkivl~~~g~-~~-------------------~~~~~~~~~~Ga~g~i~~~~~ 453 (781)
.++...|++||||++.++. .+ ..|...+.+.||.|+|++...
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 3566789999999999765 22 249999999999999999764
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.59 E-value=11 Score=41.78 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCcEEEEEEEEecCCCCe-eEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEEE
Q 047013 692 NGSMTVSRRLKNVGTPTC-TYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWS 766 (781)
Q Consensus 692 ~~~~~~~~tv~n~~~~~~-~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~~ 766 (781)
+...++...+.|.|+.+. .-++++..|.|-++.|+|.++-.-++||++++.+|+++. ....+++| +=+|.-+
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP--~~a~aGdY-~i~i~~k 468 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVP--EDAGAGDY-RITITAK 468 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcC--CCCCCCcE-EEEEEEe
Confidence 467889999999998766 567889999999999999877555899999999999994 45566665 4445443
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.02 E-value=16 Score=40.67 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=45.0
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEe-cCCceEEEEee-----cEEEEcCCCcEEEEEEEEEee
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQIT-EIVGVSAVVEP-----ITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~-~~~~~~v~~~p-----~~~~~~~~g~~~~~~vt~~~~ 748 (781)
.+..|++++.|.|..+.+|.++.. .|++-...+.- +++.+ .+||+++|+|.+.++
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps 344 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPS 344 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecC
Confidence 567899999999999999999998 77776665543 34556 789999999999984
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=81.38 E-value=12 Score=33.91 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=48.5
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEec---CC----ceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEE
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITE---IV----GVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVW 765 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~---~~----~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~ 765 (781)
...+.+++|+|.++.+..+.+.+.. .. .-.+.++|..+.+ ++|++++++| +.. ...+.+....=+|.+
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~---~~~~~~~E~~yrl~~ 88 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG---SKLPIDRESLYRLSF 88 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC---SGS-SSS-EEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec---CCCCCCceEEEEEEE
Confidence 4568899999999888788777764 11 1257899999999 7999999999 664 343444444445666
Q ss_pred E
Q 047013 766 S 766 (781)
Q Consensus 766 ~ 766 (781)
+
T Consensus 89 ~ 89 (122)
T PF00345_consen 89 R 89 (122)
T ss_dssp E
T ss_pred E
Confidence 4
No 84
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.33 E-value=1.3 Score=52.39 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=33.2
Q ss_pred ecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEEEc-----CcceEEEEEEEEeC
Q 047013 727 PITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSD-----GFHNVKSTIAVKLQ 781 (781)
Q Consensus 727 p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~~~~ 781 (781)
|..+.+ .++.+.|.|++++ .....+..++.|.--| .++..|||+-|..|
T Consensus 636 p~~l~l--~~~~R~i~VrVDp----t~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 636 PEYLML--ANQGRGINVRVDP----TGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred chhhee--ccCCceeEEEECC----cCCCCCcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 444444 4677888999987 3445555677776543 26899999988754
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=72.99 E-value=29 Score=30.51 Aligned_cols=53 Identities=21% Similarity=0.171 Sum_probs=40.3
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEee
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~ 748 (781)
......++|+|.++....|++....+.. ..+.|..-.+ .+|++.+++|++...
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEec
Confidence 4678888999999999999999887765 4566888777 789999999999873
No 86
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=71.20 E-value=21 Score=40.19 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=47.7
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEee
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~ 748 (781)
-....++++.|.+..+.+|+++++..++.++...+..+++ ++||+.++.|++..+
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 3677889999999999999999999889888876457888 899999999999984
No 87
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=69.65 E-value=17 Score=26.64 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=26.7
Q ss_pred EEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEE
Q 047013 699 RRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITF 745 (781)
Q Consensus 699 ~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~ 745 (781)
++++|.|+.+..-.--...-.=..+..+. -.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~~~--~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEYSK--KPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeCCc--ceE-CCCCEEEEEEEC
Confidence 57899998776554333333233333333 234 789999888874
No 88
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=62.44 E-value=52 Score=28.99 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCcEEEEEEEEecCCCC-eeEEEEEe----cCCceE---EEEeecEEEEcCCCcEEEEEEEEEee
Q 047013 692 NGSMTVSRRLKNVGTPT-CTYKAQIT----EIVGVS---AVVEPITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 692 ~~~~~~~~tv~n~~~~~-~~y~~~~~----~~~~~~---v~~~p~~~~~~~~g~~~~~~vt~~~~ 748 (781)
+...++.++++|..+.. .+-++... .-.|+. +......+++ ++|++.++++++.+.
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 37899999999999877 54333221 123553 5666667777 799999999999984
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=61.40 E-value=45 Score=28.45 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=32.2
Q ss_pred CcEEEEEEEEecCCCC-eeEEEEEecCCceEEEEeecEE-EEcCCCcEEEEEEEEEe
Q 047013 693 GSMTVSRRLKNVGTPT-CTYKAQITEIVGVSAVVEPITL-NFTKYGEELTFKITFSV 747 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~-~~y~~~~~~~~~~~v~~~p~~~-~~~~~g~~~~~~vt~~~ 747 (781)
...+++++|+|.|... ..+.+.+... |..+ ....+ .+ .+|++.++++++..
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTP 71 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEe
Confidence 6899999999999853 4566665433 3222 22223 44 78999999888888
No 90
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=59.73 E-value=27 Score=29.46 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=26.2
Q ss_pred EEEEEEEEecCCCCeeEE--------EEEecCCceE---------EEEeecEEEEcCCCcEEEEEEEEEe
Q 047013 695 MTVSRRLKNVGTPTCTYK--------AQITEIVGVS---------AVVEPITLNFTKYGEELTFKITFSV 747 (781)
Q Consensus 695 ~~~~~tv~n~~~~~~~y~--------~~~~~~~~~~---------v~~~p~~~~~~~~g~~~~~~vt~~~ 747 (781)
..++++|+|.++.+.+.+ +.+....|-. ++---...++ ++||+++|+.++..
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECC
Confidence 356777888876544443 3343333333 2333345566 79999999988886
No 91
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=56.24 E-value=77 Score=29.59 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=49.5
Q ss_pred CcEEEEEEEEecCCC-CeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEEE
Q 047013 693 GSMTVSRRLKNVGTP-TCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWS 766 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~-~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~~ 766 (781)
....+.+-|-|..+. -+.-++.......+++.-.|..+++ .|++.++++.++.+ .....++.||.|++.
T Consensus 69 ~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKV----sStetGvIfG~I~Yd 138 (140)
T PF07718_consen 69 YDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKV----SSTETGVIFGNIVYD 138 (140)
T ss_pred eeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEE----EeccCCEEEEEEEEe
Confidence 345566666776542 2234444445567888878888998 78999999999998 346678899999985
No 92
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=50.31 E-value=7.1 Score=33.90 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=8.9
Q ss_pred CCCcchHHHHHHHHHH
Q 047013 1 MRLSNGFVLLLLFFIL 16 (781)
Q Consensus 1 ~~~~~~~~~l~l~~~~ 16 (781)
|. +|.||+|.|+|++
T Consensus 1 Ma-SK~~llL~l~LA~ 15 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAA 15 (95)
T ss_pred Cc-hhHHHHHHHHHHH
Confidence 66 6666666665433
No 93
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=48.13 E-value=1.1e+02 Score=26.03 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=33.5
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEE
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFS 746 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~ 746 (781)
....+.++++|.|....++++.-..-. .-.|.++++ ++|++++.++.+.
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPLA 66 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEeec
Confidence 345899999999988888877652211 012566677 7888887777663
No 94
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=42.06 E-value=76 Score=26.39 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=27.7
Q ss_pred EEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEEEcC
Q 047013 722 SAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDG 768 (781)
Q Consensus 722 ~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~~~~ 768 (781)
.+++.|..+++ ..|++..|+++++.. . ... ...+.|+..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~---~--~~~--~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPS---S--AKV--TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECC---C--CCc--cceEEEEEC
Confidence 57788988888 689999999997752 1 111 556777654
No 95
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=40.61 E-value=67 Score=39.26 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=34.5
Q ss_pred CcEEEEEEEEecCCCCeeEEEE--EecCCceEEEEee-------cEEEEcCCCcEEEEEEEEEeec
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQ--ITEIVGVSAVVEP-------ITLNFTKYGEELTFKITFSVKG 749 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~--~~~~~~~~v~~~p-------~~~~~~~~g~~~~~~vt~~~~~ 749 (781)
+..+++++|+|+|+.+..-.+. +..|.+. +. .| ..+.+ ++||++++++++..++
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 5688999999999855444333 3433221 11 12 23445 8999999999988743
No 96
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=40.48 E-value=32 Score=36.26 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=51.0
Q ss_pred ccccCCCceEeecccccCCCCC---CCCChHHH----------HHHHHHhhhcCCcEEEecCCCCC------------CC
Q 047013 253 AKGGSPKARLAAYKVCWKPNGA---NLCNAADI----------IAGFDVAIHDGVDIISASLGSKP------------KE 307 (781)
Q Consensus 253 ~~GvAP~A~l~~~kv~~~~~~~---~~~~~~~i----------~~ai~~a~~~g~dVIN~SlG~~~------------~~ 307 (781)
++-+||.+.|-+-..+|...+. .++..+-+ +.-+++|+++|.+||+ |.|... ..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 5778999999888777754421 12222323 3445678999999997 666641 22
Q ss_pred CCCChHHHHHHHH-H----hCCCEEEEecC
Q 047013 308 HFESSVAVGSFHA-M----MHGILVVASAG 332 (781)
Q Consensus 308 ~~~~~~~~a~~~a-~----~~Gi~vV~AAG 332 (781)
...||+++.+.+- + ..||.||+|+-
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 3457888777642 2 46788999853
No 97
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=36.38 E-value=16 Score=16.52 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=4.2
Q ss_pred cccCCC
Q 047013 510 FFSARG 515 (781)
Q Consensus 510 ~fSs~G 515 (781)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 98
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.52 E-value=1.4e+02 Score=27.52 Aligned_cols=46 Identities=4% Similarity=-0.071 Sum_probs=31.8
Q ss_pred HHHHHhCCchhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeE
Q 047013 58 FLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVV 103 (781)
Q Consensus 58 ~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~ 103 (781)
-+............++.|.=+....-+.+.+++-....|.++|++.
T Consensus 80 ~~s~kykni~Gv~ekidY~D~yA~E~vdId~tkvd~k~L~k~~G~s 125 (152)
T COG4808 80 PLSAKYKNIAGVEEKLDYKDTYAQENVDIDMTKVDFKALQKISGIS 125 (152)
T ss_pred HHHHHhcCCcccceeeeeecccceeeeccceeeecHHHHhcCcCcc
Confidence 3333334343445566665556778888899999999999999984
No 99
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.20 E-value=2.9e+02 Score=27.09 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=35.2
Q ss_pred CCcEEEEEEEEecCCCCeeEEEEEec----CCceEEEEe---ecEEEEcCCCcEEEEEEEEEe
Q 047013 692 NGSMTVSRRLKNVGTPTCTYKAQITE----IVGVSAVVE---PITLNFTKYGEELTFKITFSV 747 (781)
Q Consensus 692 ~~~~~~~~tv~n~~~~~~~y~~~~~~----~~~~~v~~~---p~~~~~~~~g~~~~~~vt~~~ 747 (781)
+...+++++|-|.|+. .-|.+++.. ++.+++.-- -..-++ ++|+..+.++++.+
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i-~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERI-PPGENVSHSYVVRP 97 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEE-CCCCeEEEEEEEee
Confidence 3678999999999974 557777654 233333111 111133 78999888888887
No 100
>PRK15019 CsdA-binding activator; Provisional
Probab=30.97 E-value=47 Score=31.41 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=28.6
Q ss_pred ceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 047013 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKS 591 (781)
Q Consensus 557 y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~ 591 (781)
-..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 76 ~~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 76 KMHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34455666 68999999999999999999999876
No 101
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=30.80 E-value=52 Score=23.58 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=18.8
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc
Q 047013 574 AGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 574 aALl~q~~p~lt~~~ik~~L~~T 596 (781)
+--|++.+|++++..|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 44678899999999999999765
No 102
>PLN03080 Probable beta-xylosidase; Provisional
Probab=30.80 E-value=82 Score=38.55 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=32.9
Q ss_pred cEEEEEEEEecCCCCeeEEEE--EecCCc-e----EEEEeecEEEEcCCCcEEEEEEEEEe
Q 047013 694 SMTVSRRLKNVGTPTCTYKAQ--ITEIVG-V----SAVVEPITLNFTKYGEELTFKITFSV 747 (781)
Q Consensus 694 ~~~~~~tv~n~~~~~~~y~~~--~~~~~~-~----~v~~~p~~~~~~~~g~~~~~~vt~~~ 747 (781)
..+++++|||+|+.+..-.+. +..|.. . +--+--..+.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 478999999999866555544 333321 1 00011133455 78999988888875
No 103
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=29.23 E-value=53 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=29.2
Q ss_pred ceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 047013 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSA 592 (781)
Q Consensus 557 y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~ 592 (781)
-..+.|.| =|++|-|.+|||.+.+-..+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34456776 589999999999999999999998744
No 104
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=28.97 E-value=3.9e+02 Score=23.23 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=23.6
Q ss_pred CcEEEEEEEEecCCCC-eeEEEEEecCCceEEE
Q 047013 693 GSMTVSRRLKNVGTPT-CTYKAQITEIVGVSAV 724 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~-~~y~~~~~~~~~~~v~ 724 (781)
+.....++|+|.++.+ ..|++++.-+.+.++.
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 4566678999998876 4699988877665543
No 105
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=28.77 E-value=44 Score=22.70 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHH
Q 047013 565 MACPHVAGIAGLV 577 (781)
Q Consensus 565 mAaP~VAG~aALl 577 (781)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 106
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=28.48 E-value=1.5e+02 Score=32.19 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCcEEEEEEEEecCCCCeeEEE-E---E--ec----------C------CceEEEEeecEEEEcCCCcEEEEEEEEE
Q 047013 692 NGSMTVSRRLKNVGTPTCTYKA-Q---I--TE----------I------VGVSAVVEPITLNFTKYGEELTFKITFS 746 (781)
Q Consensus 692 ~~~~~~~~tv~n~~~~~~~y~~-~---~--~~----------~------~~~~v~~~p~~~~~~~~g~~~~~~vt~~ 746 (781)
..+.+++++|||.|+++..--= . + -. | .| ++++|+.- + .+||+++++|+++
T Consensus 262 gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~p-I-~PGETrtl~V~a~ 334 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNSP-I-APGETRTLTVEAQ 334 (381)
T ss_dssp SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE
T ss_pred CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCCC-c-CCCceEEEEEEee
Confidence 3678899999999987653221 1 1 00 1 13 34444421 2 6899999999886
No 107
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.89 E-value=65 Score=30.11 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=28.5
Q ss_pred ceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 047013 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKS 591 (781)
Q Consensus 557 y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~ 591 (781)
-..+.|.| =|++|-|.+||+.+.+-..+|++|.+
T Consensus 66 ~~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 66 IIELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34455666 68999999999999999999999875
No 108
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=64 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=26.3
Q ss_pred eeeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 047013 558 NVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKS 591 (781)
Q Consensus 558 ~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~ 591 (781)
..+.|=| =|++|.|.+|++.+.+...||++|..
T Consensus 72 ~~F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDS-DARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccc-hhHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444555 36899999999999999999998753
No 109
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=24.77 E-value=75 Score=29.16 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=27.7
Q ss_pred ceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 047013 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSA 592 (781)
Q Consensus 557 y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~ 592 (781)
-..+.|.|= |++|-|++||+.+.+...+|++|.+.
T Consensus 57 ~~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 57 KVHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 345666665 67999999999999999999998764
No 110
>PRK13203 ureB urease subunit beta; Reviewed
Probab=22.00 E-value=2.5e+02 Score=24.60 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=30.7
Q ss_pred CcEEEEEEEEecCCCCee----EEEEE---------ecCCceEEEEe-ecEEEEcCCCcEEEEEEE
Q 047013 693 GSMTVSRRLKNVGTPTCT----YKAQI---------TEIVGVSAVVE-PITLNFTKYGEELTFKIT 744 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~----y~~~~---------~~~~~~~v~~~-p~~~~~~~~g~~~~~~vt 744 (781)
+..+++++|+|+|+.+.- |.+-- ...-|..+.+- -+.+.| .+|+++++++-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 678899999999986532 22210 11225555442 145677 68999866653
No 111
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=21.79 E-value=2.6e+02 Score=24.50 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=30.9
Q ss_pred CcEEEEEEEEecCCCCee----EEEEE---------ecCCceEEEEe-ecEEEEcCCCcEEEEEEE
Q 047013 693 GSMTVSRRLKNVGTPTCT----YKAQI---------TEIVGVSAVVE-PITLNFTKYGEELTFKIT 744 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~----y~~~~---------~~~~~~~v~~~-p~~~~~~~~g~~~~~~vt 744 (781)
+..+.+++|+|.|+.+.- |.+-- ...-|..+.+- -+.+.| .+|+++++++-
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEEE
Confidence 678899999999986532 22211 11125555542 146777 68999866653
No 112
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=21.44 E-value=3.2e+02 Score=28.06 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=38.2
Q ss_pred cEEEEEEEEecCCCCeeEEEEEe---cC---C----------ceEEEEeecEEEEcCCCcEEEEEEEEEe
Q 047013 694 SMTVSRRLKNVGTPTCTYKAQIT---EI---V----------GVSAVVEPITLNFTKYGEELTFKITFSV 747 (781)
Q Consensus 694 ~~~~~~tv~n~~~~~~~y~~~~~---~~---~----------~~~v~~~p~~~~~~~~g~~~~~~vt~~~ 747 (781)
.....++|.|.|+++.-+.+.+. .| . .-.+-++|..+++ ++|+++.|+|--..
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 56678899999998888877753 11 1 1247788999999 78888877765543
No 113
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=21.42 E-value=3.1e+02 Score=24.36 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=42.5
Q ss_pred CCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCCCCC---CCCChHHHHHHHHHhC-CCEEEE
Q 047013 258 PKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKE---HFESSVAVGSFHAMMH-GILVVA 329 (781)
Q Consensus 258 P~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~---~~~~~~~~a~~~a~~~-Gi~vV~ 329 (781)
++++|+.+--+ .| |....++.-+++..+.|+++|-+|-...... .-.. ++.......++ |+.||.
T Consensus 36 ~~~elvgf~~C--gG----Cpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 36 EDVELVGFFTC--GG----CPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-IDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred CCeEEEEEeeC--CC----CChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-HHHHHHHHHHHhCCCEee
Confidence 46888876443 33 8888999999999999999999997765211 1111 22222333344 888775
No 114
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=21.32 E-value=6.3e+02 Score=22.99 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=35.1
Q ss_pred CcEEEEEEEEecCCCCeeEEE----EEecCCce----EEEE---eecEEEEcCCCcEEEEEEEEEee
Q 047013 693 GSMTVSRRLKNVGTPTCTYKA----QITEIVGV----SAVV---EPITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~----~~~~~~~~----~v~~---~p~~~~~~~~g~~~~~~vt~~~~ 748 (781)
+...+.++++|.|+.+-+..- ......|. .... .+..+++ .+|++..+.|+....
T Consensus 18 g~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~ 83 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNV 83 (131)
T ss_pred CccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecC
Confidence 567899999999976544332 11111222 1111 3456788 899999999999984
No 115
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.23 E-value=1.4e+02 Score=21.39 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 573 IAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 573 ~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 566789999999999999999865
Done!