BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047017
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 13/184 (7%)
Query: 191 QTDKAMKLLDEMGMC-KKGMVGQAFQFVRSLESRGCQPDVISYNMLL----------RTL 239
Q+ +A+ L ++ MC KKG V +A + G Q YN+LL +
Sbjct: 23 QSPEAL-LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS 81
Query: 240 LNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDA 299
N G G + +MI + PN T++ E A D+++ K G+ P
Sbjct: 82 PNPGL-SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140
Query: 300 YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEK 359
SY P + +C+ G D A E +M+ +P+ +L NAD+ + ++
Sbjct: 141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR 200
Query: 360 LSDV 363
L D+
Sbjct: 201 LRDL 204
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 346 KNGNADQALEIFEKLSDVGCPPNVSSYNTMF-------SALWSSGDK--IRALGMISEML 396
K G+ +AL ++++ G + YN + +A SS + R + +M+
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 397 SKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRIN 456
+ P+E T+ + + A ++ M++ +P + SY + GFC+ +
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 457 ESIEVLAAM 465
++ EV A M
Sbjct: 158 KAYEVDAHM 166
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 288 RAAKEKGL--TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTIL---- 341
R AK+K + +P+A L K G + A+ D +G +YN +L
Sbjct: 14 RKAKKKAIQQSPEALLKQKL-DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCS 72
Query: 342 -----AAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396
N + +IF+++ PN +++ + D A M+ +M
Sbjct: 73 LAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK 132
Query: 397 SKGIEPDEITYNSLISCLCRDGMVDEA 423
+ GI+P +Y + CR G D+A
Sbjct: 133 AFGIQPRLRSYGPALFGFCRKGDADKA 159
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 13/184 (7%)
Query: 191 QTDKAMKLLDEMGMC-KKGMVGQAFQFVRSLESRGCQPDVISYNMLL----------RTL 239
Q+ +A+ L ++ C KKG V +A + G Q YN+LL +
Sbjct: 23 QSPEAL-LKQKLDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS 81
Query: 240 LNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDA 299
N G G + + I + PN T++ E A D ++ K G+ P
Sbjct: 82 PNPGL-SRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRL 140
Query: 300 YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEK 359
SY P + +C+ G D A E + + +P+ +L NAD+ + ++
Sbjct: 141 RSYGPALFGFCRKGDADKAYEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQR 200
Query: 360 LSDV 363
L D+
Sbjct: 201 LRDL 204
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 276 RDGKTEDAVDVLRAAKEKGLTP-DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI 334
+ G ++A++ + A E L P A ++ L +AY K G D AIE+ +
Sbjct: 13 KQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Query: 335 VNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISE 394
YN + A+ K G+ D+A+E ++K ++ P + ++ + +A + GD A+ E
Sbjct: 71 AWYN-LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAI----E 124
Query: 395 MLSKGIEPD 403
K +E D
Sbjct: 125 YYQKALELD 133
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 343 AFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP 402
A+ K G+ D+A+E ++K ++ P + ++ + +A + GD A+ + L
Sbjct: 10 AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 403 DEITYNSLISCLCRDGMVDEAV 424
E YN L + + G DEA+
Sbjct: 69 AEAWYN-LGNAYYKQGDYDEAI 89
>pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942
pdb|4DML|B Chain B, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942
pdb|4DML|C Chain C, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942
pdb|4DML|D Chain D, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942
pdb|4DMM|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942 In Complex With Nadp
pdb|4DMM|B Chain B, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942 In Complex With Nadp
pdb|4DMM|C Chain C, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942 In Complex With Nadp
pdb|4DMM|D Chain D, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942 In Complex With Nadp
Length = 269
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDR 131
V +C++ K +++S + + + ++ + G P Y+A KA I L V
Sbjct: 141 VFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSA-----AKAGVIGLTKTVAKE 195
Query: 132 LRSRGFSPDVVT 143
L SRG + + V
Sbjct: 196 LASRGITVNAVA 207
>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Bacillus Subtilis Subsp. Subtilis Str. 168
Length = 485
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRA 289
+S+ L ++ +N GKW GE TE I + +V+T +SL + EDA D+ +
Sbjct: 1 MSFETLNKSFIN-GKWTGGESGRTEDILNPYDQSVIT----TASLATGKQLEDAFDIAQK 55
Query: 290 AKE---KGLTPDAYSYDPLISAYCKDGRLDL 317
A++ K T D + Y + R D+
Sbjct: 56 AQKEWAKSTTEDRKAVLQKARGYLHENRDDI 86
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
Tbc1 Domain Family Member 14
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 291 KEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG 329
K+ LTPD Y D + + Y K LDLA D DG
Sbjct: 220 KKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258
>pdb|2ZAB|A Chain A, Crystal Structure Of Family 7 Alginate Lyase A1-Ii' Y284f
In Cmplex With Product (Ggg)
pdb|2ZAC|A Chain A, Crystal Structure Of Family 7 Alginate Lyase A1-Ii' Y284f
In Complex With Product (Mmg)
Length = 236
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 290 AKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339
A+ G+ D + PL+ A +DG+LD+ ++ SDG D+ NY T
Sbjct: 108 AQIHGIMDDGTNAPPLVKAVFQDGQLDMQVK----QNSDGTGSDVHNYFT 153
>pdb|2ZAA|A Chain A, Crystal Structure Of Family 7 Alginate Lyase A1-Ii'
H191nY284F IN Complex With Substrate (Ggmg)
Length = 236
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 290 AKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339
A+ G+ D + PL+ A +DG+LD+ ++ SDG D+ NY T
Sbjct: 108 AQINGIMDDGTNAPPLVKAVFQDGQLDMQVK----QNSDGTGSDVHNYFT 153
>pdb|2CWS|A Chain A, Crystal Structure At 1.0 A Of Alginate Lyase A1-Ii', A
Member Of Polysaccharide Lyase Family-7
pdb|2Z42|A Chain A, Crystal Struture Of Family 7 Alginate Lyase A1-Ii' From
Sphingomonas Sp. A1
Length = 237
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 290 AKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339
A+ G+ D + PL+ A +DG+LD+ ++ SDG D+ NY T
Sbjct: 109 AQIHGIMDDGTNAPPLVKAVFQDGQLDMQVK----QNSDGTGSDVHNYFT 154
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 343 AFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP 402
A+ K G+ D+A+E ++K ++ P N ++ + +A + GD A+ E K +E
Sbjct: 18 AYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAI----EYYQKALEL 72
Query: 403 D----EITYNSLISCLCRDGMVDEAV 424
D E YN L + + G DEA+
Sbjct: 73 DPNNAEAWYN-LGNAYYKQGDYDEAI 97
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 22/126 (17%)
Query: 202 MGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEG----EKLMTEMIS 257
+G ++G + + ++ G PD++SY L+ MG+ ++ E+ + +M
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC---MGRQDQDAGTIERCLEQMSQ 229
Query: 258 RGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE--------KGLTPDAYSYDPLISAY 309
GL+ + ++L+S ED VL+A + L P + L Y
Sbjct: 230 EGLKLQALFTAVLLSE-------EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282
Query: 310 CKDGRL 315
KDGR+
Sbjct: 283 AKDGRV 288
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE---KGLTPDAYSYDPLISAYCK 311
M R PNV L++ L ++ E+ L+AA E KG+ AYS +PL+S
Sbjct: 229 MAMRVPTPNVSVVD-LVAELEKEVTVEEVNAALKAAAEGELKGIL--AYSEEPLVSRDYN 285
Query: 312 DGRLDLAIEFLDYMISDGCLPDIVNY 337
+ I+ L M+ DG + +V++
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSW 311
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE---KGLTPDAYSYDPLISAYCK 311
M R PNV L++ L ++ E+ L+AA E KG+ AYS +PL+S
Sbjct: 229 MAMRVPTPNVSVVD-LVAELEKEVTVEEVNAALKAAAEGELKGIL--AYSEEPLVSRDYN 285
Query: 312 DGRLDLAIEFLDYMISDGCLPDIVNY 337
+ I+ L M+ DG + +V++
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSW 311
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE---KGLTPDAYSYDPLISAYCK 311
M R PNV L++ L ++ E+ L+AA E KG+ AYS +PL+S
Sbjct: 229 MAMRVPTPNVSVVD-LVAELEKEVTVEEVNAALKAAAEGELKGIL--AYSEEPLVSRDYN 285
Query: 312 DGRLDLAIEFLDYMISDGCLPDIVNY 337
+ I+ L M+ DG + +V++
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSW 311
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE---KGLTPDAYSYDPLISAYCK 311
M R PNV L++ L ++ E+ L+AA E KG+ AYS +PL+S
Sbjct: 229 MAMRVPTPNVSVVD-LVAELEKEVTVEEVNAALKAAAEGELKGIL--AYSEEPLVSRDYN 285
Query: 312 DGRLDLAIEFLDYMISDGCLPDIVNY 337
+ I+ L M+ DG + +V++
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSW 311
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE---KGLTPDAYSYDPLISAYCK 311
M R PNV L++ L ++ E+ L+AA E KG+ AYS +PL+S
Sbjct: 229 MAMRVPTPNVSVVD-LVAELEKEVTVEEVNAALKAAAEGELKGIL--AYSEEPLVSRDYN 285
Query: 312 DGRLDLAIEFLDYMISDGCLPDIVNY 337
+ I+ L M+ DG + +V++
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSW 311
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 128 VLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM 187
+LDR+ GFSPD V + SL S+ + SA +F L + P V I+ T+
Sbjct: 161 ILDRMGDAGFSPDEVVDLLAAXSLASQEGLNSA--IFRSPL--DSTPQVFDTQFYIE-TL 215
Query: 188 LEGQTDKAMKL 198
L+G T L
Sbjct: 216 LKGTTQPGPSL 226
>pdb|2ZA9|A Chain A, Crystal Structure Of Alginate Lyase A1-ii' N141c/n199c
Length = 236
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 290 AKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339
A+ G+ D PL+ A +DG+LD+ ++ SDG D+ NY T
Sbjct: 108 AQIHGIMDDGTCAPPLVKAVFQDGQLDMQVK----QNSDGTGSDVHNYFT 153
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 343 AFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP 402
A+ K G+ D+A+E ++K ++ P N ++ + +A + GD A+ + L
Sbjct: 18 AYYKQGDYDEAIEYYQKALEL-YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 76
Query: 403 DEITYNSLISCLCRDGMVDEAV 424
E YN L + + G DEA+
Sbjct: 77 AEAWYN-LGNAYYKQGDYDEAI 97
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 276 RDGKTEDAVDVLRAAKEKGLTPD-AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI 334
+ G ++A++ + A E L P+ A ++ L +AY K G D AIE+ Y + P+
Sbjct: 21 KQGDYDEAIEYYQKALE--LYPNNAEAWYNLGNAYYKQGDYDEAIEY--YQKALELYPNN 76
Query: 335 VN--YNTILAAFCKNGNADQALEIFEK 359
YN + A+ K G+ D+A+E ++K
Sbjct: 77 AEAWYN-LGNAYYKQGDYDEAIEYYQK 102
>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|B Chain B, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|C Chain C, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|D Chain D, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|E Chain E, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|F Chain F, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|G Chain G, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|H Chain H, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
Length = 246
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNALISGFCKANQIELANK 127
V +CTK + +F ++ + V + ++ G P + A A + G K + ELA++
Sbjct: 117 VFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASR 175
>pdb|3LQH|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo In The Free Form
pdb|3LQI|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|C Chain C, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQJ|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
pdb|3LQJ|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
Length = 183
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 24 TRPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMV--------ANGCKPDVVMC 75
+R +HLL + ++ ++ +KR G + L F + +V ++G +P++
Sbjct: 90 SRTTSHLLRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKA 149
Query: 76 TKLIKKFF 83
++K FF
Sbjct: 150 NSMVKSFF 157
>pdb|4HQL|A Chain A, Crystal Structure Of Magnesium-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQL|B Chain B, Crystal Structure Of Magnesium-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQN|A Chain A, Crystal Structure Of Manganese-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQN|B Chain B, Crystal Structure Of Manganese-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQO|A Chain A, Crystal Structure Of Plasmodium Vivax Trap Protein
pdb|4HQO|B Chain B, Crystal Structure Of Plasmodium Vivax Trap Protein
Length = 266
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 479 LLIEG---IGYGGWRAEAMELANALVSMHAISRDTF 511
LL++G IGY W + + + N L++ ++SRDT
Sbjct: 23 LLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTI 58
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 28.5 bits (62), Expect = 10.0, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 343 AFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP 402
A+ K G+ D+A+E ++K ++ P N ++ + +A + GD A+ E K +E
Sbjct: 18 AYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAI----EYYQKALEL 72
Query: 403 D 403
D
Sbjct: 73 D 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,704,841
Number of Sequences: 62578
Number of extensions: 574217
Number of successful extensions: 1636
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 38
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)